RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17511
(466 letters)
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon
induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Length = 140
Score = 178 bits (452), Expect = 1e-54
Identities = 55/128 (42%), Positives = 83/128 (64%)
Query: 335 VPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSV 394
V NEK+ +++ +KP IK ++E N++ W+ IP+IEDGNNFGV++QE + + S+
Sbjct: 2 VNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSL 61
Query: 395 ESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRY 454
++ F+ Q+S+YF R ++K AK PH+ DYRQ V ELDE EY + L++ EIRN Y
Sbjct: 62 HTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAY 121
Query: 455 LCLKTIVH 462
L I+
Sbjct: 122 AVLYDIIL 129
Score = 161 bits (409), Expect = 3e-48
Identities = 48/112 (42%), Positives = 74/112 (66%)
Query: 134 VPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSV 193
V NEK+ +++ +KP IK ++E N++ W+ IP+IEDGNNFGV++QE + + S+
Sbjct: 2 VNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSL 61
Query: 194 ESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLV 245
++ F+ Q+S+YF R ++K AK PH+ DYRQ V ELDE EY + L+
Sbjct: 62 HTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLM 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 9e-12
Identities = 69/463 (14%), Positives = 127/463 (27%), Gaps = 135/463 (29%)
Query: 79 FQVEDVTKIHQDINIPVPEPITLNSHSDGPVTKKAKRELD-NDVSGTPVLLLTNGPV--- 134
F+ + ++DI + V E D DV P +L+ +
Sbjct: 9 FETGEHQYQYKDI-LSVFED-------------AFVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 135 ---PSN-EKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEI 190
+ + +++V+ F+ + F + I E
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQK---------FVEEVLRINYKF---LMSPIKTEQ 102
Query: 191 QSVESEAAAFYDQMSR----------YFVSRAKVISKVAKYPHIADYRQAVKELDEKEYL 240
+ + +Q R Y VSR + K+ RQA+ EL + +
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---------RQALLELRPAKNV 153
Query: 241 SL---------WLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQD 291
+ W+ +D S + KI LN E V ++ Q
Sbjct: 154 LIDGVLGSGKTWVA---LDVCLSYK---VQCKMDFKIFWLN---LKNCNSPETVLEMLQK 204
Query: 292 INIPI-PEPITLNSHSDGP-----VTKKAKRE-------------LDNDVS--------- 323
+ I P + + HS + R L +V
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFN 263
Query: 324 -GTPVLLLT-NGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKM---WI---TFMIPK-IE 374
+LL T V + H + V + ++ +P+ +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 375 DGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSR-AKVISKVAKYPHIADYRQAVK 433
N +SI I I+ + A +D + +I A+YR+
Sbjct: 324 TTNPRRLSI---IAESIR----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 434 EL-----DEK---EYLS-LW---------LVLCEIRNRYLCLK 458
L LS +W +V+ ++ L K
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Score = 58.3 bits (140), Expect = 3e-09
Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 76/291 (26%)
Query: 29 RFQPPSIMANGAHVKVKEYVDNVKSQAEELIL-KGFPEKIVILND--------------- 72
+ P + +K + +++++ L+ K + +++L +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 73 -LLATEQFQVEDVTKIHQDINIPVPEPITLNSHSDGPVTKKAKREL-----DNDVSGTPV 126
LL T QV D ++ I+L+ HS +T + L D P
Sbjct: 268 ILLTTRFKQVTDF------LSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPR 320
Query: 127 LLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDI 186
+LT P +S++ I+ + W K+ +I E
Sbjct: 321 EVLTTNP--------RRLSIIAESIR---DGLATWDNWKHVNCDKLT-------TIIESS 362
Query: 187 LAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLS-LWLV 245
L ++ E +D++S F A + + + LS +W
Sbjct: 363 LNVLEPAEYRK--MFDRLS-VFPPSAHIPTIL---------------------LSLIWFD 398
Query: 246 KEYVDT----VKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDI 292
D K L+ K E + + + + ++E+ +H+ I
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Score = 31.4 bits (70), Expect = 0.88
Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 17/80 (21%)
Query: 27 QKRFQPPSIMANGAHVKVKEYV-----DNVKSQAEELILKGF----------PEKIVILN 71
+K F S+ + + +V +++ E + +
Sbjct: 372 RKMFDRLSVFPP--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 72 DLLATEQFQVEDVTKIHQDI 91
+ + ++E+ +H+ I
Sbjct: 430 SIYLELKVKLENEYALHRSI 449
>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome
activator 11S, hydrolase-HYD activator complex; 1.90A
{Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O
1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O
Length = 237
Score = 61.9 bits (149), Expect = 4e-11
Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 25/148 (16%)
Query: 339 EKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEA 398
E+L ++ + + + ++ I IP+ ++ +N GV++Q +L I +E +
Sbjct: 71 EQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKT 130
Query: 399 AAFYDQ--------------MSRYFVSRAKVISKVAKYPHIADYRQ-----------AVK 433
++ + Y +R+ V K+ + ++
Sbjct: 131 LGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELR 190
Query: 434 ELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
++D L + L + +
Sbjct: 191 QIDADFMLKVELATTHLSTMVRAVINAY 218
Score = 57.6 bits (138), Expect = 1e-09
Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 138 EKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEA 197
E+L ++ + + + ++ I IP+ ++ +N GV++Q +L I +E +
Sbjct: 71 EQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKT 130
Query: 198 AAFYDQ--------------MSRYFVSRAKVISKVAKYPHIADYRQ-----------AVK 232
++ + Y +R+ V K+ + ++
Sbjct: 131 LGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELR 190
Query: 233 ELDEKEYLSLWLVKEYVDTV 252
++D L + L ++ T+
Sbjct: 191 QIDADFMLKVELATTHLSTM 210
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon
induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Length = 60
Score = 49.2 bits (117), Expect = 3e-08
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 40 AHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI 93
A KV + +++ ++ E L+ FP+KI L+ L +++ + ++I
Sbjct: 7 AQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI 60
Score = 46.5 bits (110), Expect = 3e-07
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI 294
V + + + ++ E L+ FP+KI L+ L +++ + ++I
Sbjct: 11 VDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI 60
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.004
Identities = 66/426 (15%), Positives = 126/426 (29%), Gaps = 164/426 (38%)
Query: 63 FPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLNSHSDGPVTKKA--KRELD-- 118
F E L DL T V D+ K + TL+ + + + L+
Sbjct: 170 FEE----LRDLYQTYHVLVGDLIKFSAE---------TLSELIRTTLDAEKVFTQGLNIL 216
Query: 119 ---NDVSGTP-VLLLTNGPV--PSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKI 172
+ S TP L + P+ P +I V+ QL + K + P
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCP-------LIGVI-----QLAHYVVTAK--LLGFTPGE 262
Query: 173 EDGNNFGVSIQ-EDIL-AEIQSVESEAAAFYDQMSRY-----FV-SRAKVISKVAKYPHI 224
G + + ++ A + +F+ + + F+ R YP+
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA-----YPNT 317
Query: 225 A-------DYRQ----------AVKELDEKEYLSLWLVKEYVDTVKSQAEE--------- 258
+ D + ++ L +++ V++YV+ S
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQ------VQDYVNKTNSHLPAGKQVEISLV 371
Query: 259 -----LILKGFPEKIVILNDLL-------ATEQFQV------------------------ 282
L++ G P+ + LN L +Q ++
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 283 -EDVT-KIHQDINIPIPEPITLNSHSDG-PV--TKKAK--RELDNDVSGTPVLLLTNGPV 335
+ I++D+ + ++ N+ PV T R L +S V + PV
Sbjct: 432 LVPASDLINKDL---VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 336 --PSNEKLKLMISVVKPHIKQLVEHSNVLKMWITF----------MIPKIEDGNNFGVSI 383
+ + K HI + F + + +DG GV +
Sbjct: 489 KWETTTQFKA------THI-------------LDFGPGGASGLGVLTHRNKDGT--GVRV 527
Query: 384 QEDILA 389
I+A
Sbjct: 528 ---IVA 530
Score = 34.6 bits (79), Expect = 0.082
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 28/111 (25%)
Query: 356 VEHSNVLKMWITFMIPKIEDGNNFGVSIQ--EDILAEIQSVESEAAAFYDQMSRYFVSRA 413
+EH ++P +F ++ Q E + AA + +
Sbjct: 16 LEHV--------LLVPT----ASFFIASQLQEQFNKILPEPTEGFAADDEPTT------- 56
Query: 414 KVISKVAKY-PHIADYRQAVKELDEKEYLS-LWLVLCEIRNRYLCLKTIVH 462
V K+ +++ V+ ++ L L L E N YL I H
Sbjct: 57 -PAELVGKFLGYVSSL---VEPSKVGQFDQVLNLCLTEFENCYLEGNDI-H 102
Score = 33.5 bits (76), Expect = 0.18
Identities = 40/211 (18%), Positives = 61/211 (28%), Gaps = 98/211 (46%)
Query: 3 LKKEKCFIEQPSLTVGVTRRTFTNQK-----RFQP---P---SIMANGAHVKVKEYVDNV 51
L+K K PS + +R F+ +K RF P P ++
Sbjct: 393 LRKAKA----PS-GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP------------- 434
Query: 52 KSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLNSHSDGPVTK 111
A +LI K + V N +DI IPV + T
Sbjct: 435 ---ASDLINKDLVKNNVSFN----------------AKDIQIPV--------YD----TF 463
Query: 112 KAK--RELDNDVSGTPVLLLTNGPV--PSNEKLKLMISVVKPHIKQLVEHSNVLKMWITF 167
R L +S V + PV + + K HI + F
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA------THI-------------LDF 504
Query: 168 ----------MIPKIEDGNNFGVSIQEDILA 188
+ + +DG GV + I+A
Sbjct: 505 GPGGASGLGVLTHRNKDGT--GVRV---IVA 530
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 108
Score = 30.2 bits (68), Expect = 0.52
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 403 DQMSRY-FVSRAKVISK---VAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNR 453
D M V A V V ++ D AV++LD ++ S IR +
Sbjct: 34 DHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase,
SR protein, PRE-mRNA splicing, at binding, chromosome
partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP:
d.58.7.1 PDB: 2o3d_A 1wg4_A
Length = 115
Score = 29.8 bits (67), Expect = 0.63
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 403 DQMSRY-FVSRAKVISK---VAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNR 453
D M V A V V ++ D AV++LD ++ S IR +
Sbjct: 35 DHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A {Grass
carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.3 bits (70), Expect = 0.78
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 170 PKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQM-SRYFVSRAKVISKVAKYPHIADYR 228
P++ D N I D + ++ A F D + R +V+ ++ Y + Y
Sbjct: 1029 PQLIDDGNVPRDIAGDWVYPSDVLQVSVAVFRDYVWPMVKAGRTRVLVELGHYVYTLHYY 1088
Query: 229 QAVKELDEKEYLSLWLVK 246
LDE L WL K
Sbjct: 1089 DPQISLDEAPILEEWLSK 1106
Score = 30.9 bits (69), Expect = 0.96
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 371 PKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQM-SRYFVSRAKVISKVAKYPHIADYR 429
P++ D N I D + ++ A F D + R +V+ ++ Y + Y
Sbjct: 1029 PQLIDDGNVPRDIAGDWVYPSDVLQVSVAVFRDYVWPMVKAGRTRVLVELGHYVYTLHYY 1088
Query: 430 QAVKELDEKEYLSLWL 445
LDE L WL
Sbjct: 1089 DPQISLDEAPILEEWL 1104
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB:
2cse_V
Length = 1275
Score = 31.0 bits (69), Expect = 1.1
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 170 PKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQM-SRYFVSRAKVISKVAKYPHIADYR 228
P I D V + + + + + F Q + ++ ++ YP++ Y
Sbjct: 1092 PMIRDETGMMVPFEGNWIFPLALWQMNTRYFNQQFDAWIKTGELRIRIEMGAYPYMLHYY 1151
Query: 229 QAVKELDEKEYLSLWLVK 246
+ + S WL +
Sbjct: 1152 DPRQYANAWNLTSAWLEE 1169
Score = 30.6 bits (68), Expect = 1.2
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 371 PKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQM-SRYFVSRAKVISKVAKYPHIADYR 429
P I D V + + + + + F Q + ++ ++ YP++ Y
Sbjct: 1092 PMIRDETGMMVPFEGNWIFPLALWQMNTRYFNQQFDAWIKTGELRIRIEMGAYPYMLHYY 1151
Query: 430 QAVKELDEKEYLSLWL 445
+ + S WL
Sbjct: 1152 DPRQYANAWNLTSAWL 1167
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.2
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 13/36 (36%)
Query: 228 RQAVKELDEKEYLSLWLVKEYVD------TVKSQAE 257
+QA+K+L SL K Y D +K+ E
Sbjct: 19 KQALKKLQA----SL---KLYADDSAPALAIKATME 47
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus,
mitosis, anaphase, cell cycle, CE division, spindle
checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB:
2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Length = 206
Score = 28.5 bits (63), Expect = 3.7
Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 23 TFTNQKRFQPPSIMANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVE 82
TFT +++ ++ +++ +Y++NV Q ++ + K +K+V++ + + +
Sbjct: 43 TFTRVQKYGLTLLVT--TDLELIKYLNNVVEQLKDWLYKSSVQKLVVVISNIESGEVLER 100
Query: 83 DVTKIHQDINIP 94
I D
Sbjct: 101 WQFDIESDKTAK 112
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 203
Score = 28.2 bits (62), Expect = 5.2
Identities = 12/122 (9%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 23 TFTNQKRFQPPSIMANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVE 82
F +++ +++ +VK Y+ + SQ + + +K++++ + + +
Sbjct: 41 DFKVVRKYGLNMLVSV--DEEVKTYIRKIVSQLHKWMFAKKIQKLILV--ITSKCSGEDL 96
Query: 83 DVTKIHQDINIPVPEPITLNSHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKL 142
+ + + ++ + + + D +K + L ++ T L + +
Sbjct: 97 ERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQITATVTFL---PQLEEQCTFNV 153
Query: 143 MI 144
++
Sbjct: 154 LV 155
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 28.6 bits (63), Expect = 6.2
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 64 PEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLNSHSDGPVTK 111
+V+L D E + + + +D+N P+P P ++ + D P
Sbjct: 910 NNGVVVLRDREPKEPVALIETVRQMKDVNAPLPTPFKVDDNVDFPSAL 957
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA
replication, translesion DNA SYNT cell cycle, cell
division, mitosis, DNA damage; HET: DNA; 1.90A {Homo
sapiens} PDB: 3abe_C*
Length = 227
Score = 27.8 bits (61), Expect = 7.6
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 23 TFTNQKRFQPPSIMANGAHVKVKEYVDNVKSQAEELILKGFPEKIVI 69
F +K++ P M+ H ++ +Y+ + + L+ K EK+V+
Sbjct: 57 IFQKRKKYNVPVQMSC--HPELNQYIQDTLHCVKPLLEKNDVEKVVV 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.378
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,048,250
Number of extensions: 431544
Number of successful extensions: 982
Number of sequences better than 10.0: 1
Number of HSP's gapped: 977
Number of HSP's successfully gapped: 34
Length of query: 466
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 369
Effective length of database: 3,993,456
Effective search space: 1473585264
Effective search space used: 1473585264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.0 bits)