RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17511
         (466 letters)



>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 200

 Score =  210 bits (535), Expect = 1e-66
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 39/218 (17%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
           V  + + + ++ E L+   FP+KI  L+  L        +++ +   ++I +        
Sbjct: 11  VDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDIAVN------- 63

Query: 305 HSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKM 364
                                            NEK+ +++  +KP IK ++E  N++  
Sbjct: 64  --------------------------------CNEKIVVLLQRLKPEIKDVIEQLNLVTT 91

Query: 365 WITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPH 424
           W+   IP+IEDGNNFGV++QE +   + S+ ++   F+ Q+S+YF  R   ++K AK PH
Sbjct: 92  WLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPH 151

Query: 425 IADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVH 462
           + DYRQ V ELDE EY  + L++ EIRN Y  L  I+ 
Sbjct: 152 VGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIIL 189



 Score =  196 bits (501), Expect = 2e-61
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 40/226 (17%)

Query: 43  KVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLN 102
           KV  + +++ ++ E L+   FP+KI  L+  L        +++ +   ++I V       
Sbjct: 10  KVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDIAVN------ 63

Query: 103 SHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLK 162
                                             NEK+ +++  +KP IK ++E  N++ 
Sbjct: 64  ---------------------------------CNEKIVVLLQRLKPEIKDVIEQLNLVT 90

Query: 163 MWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYP 222
            W+   IP+IEDGNNFGV++QE +   + S+ ++   F+ Q+S+YF  R   ++K AK P
Sbjct: 91  TWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQP 150

Query: 223 HIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKI 268
           H+ DYRQ V ELDE EY  + L+   +    +   ++ILK F EK+
Sbjct: 151 HVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNF-EKL 195


>d2id6a2 a.121.1.1 (A:76-200) Transcriptional regulator TM1030
           {Thermotoga maritima [TaxId: 2336]}
          Length = 125

 Score = 26.7 bits (59), Expect = 2.9
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 18/87 (20%)

Query: 200 FYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEEL 259
            +D M R+   + +     A +P  AD+   +  +DE               ++ +    
Sbjct: 3   IFDFMERWIEKKLEYS---ASHPEEADFLITLVSVDEG--------------LRKRILLD 45

Query: 260 ILKGFPEKIVILNDLLATEQFQVEDVT 286
           + K        + + L       EDVT
Sbjct: 46  LEKSQRVFFDFVREKLKDLDLA-EDVT 71


>d1yaro1 a.24.8.1 (O:4-231) Proteasome activator protein PA26
           {Trypanosoma brucei [TaxId: 5691]}
          Length = 228

 Score = 26.2 bits (57), Expect = 9.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 158 SNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVE 194
           +  ++  I   IP+ ++ +N GV++Q  +L  I  +E
Sbjct: 82  AETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELE 118



 Score = 26.2 bits (57), Expect = 9.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 359 SNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVE 395
           +  ++  I   IP+ ++ +N GV++Q  +L  I  +E
Sbjct: 82  AETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELE 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,704,227
Number of extensions: 81737
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 10
Length of query: 466
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 377
Effective length of database: 1,185,626
Effective search space: 446981002
Effective search space used: 446981002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)