BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17514
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90988|SMC2_CHICK Structural maintenance of chromosomes protein 2 OS=Gallus gallus
GN=SMC2 PE=2 SV=1
Length = 1189
Score = 227 bits (579), Expect = 2e-59, Method: Composition-based stats.
Identities = 108/160 (67%), Positives = 132/160 (82%), Gaps = 1/160 (0%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
MYIKS+VL+GFKSY R EI DFD FNAITGLNG+GKSNILD ICF+LGI + QVRA+
Sbjct: 1 MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
+LQ+L+YKNGQAGV KA+V++TFDNSDKKN P+G+EN++ I I RQ+ + +Y+ING
Sbjct: 61 SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYLINGM 120
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ + RV DLF SV LNVNNPHFLIMQG++TKVLNMKP E
Sbjct: 121 NASNNRVQDLFGSVGLNVNNPHFLIMQGQITKVLNMKPTE 160
>sp|Q8CG48|SMC2_MOUSE Structural maintenance of chromosomes protein 2 OS=Mus musculus
GN=Smc2 PE=1 SV=2
Length = 1191
Score = 223 bits (569), Expect = 3e-58, Method: Composition-based stats.
Identities = 106/160 (66%), Positives = 129/160 (80%), Gaps = 1/160 (0%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
MY+KS++L+GFKSY R E+N FD FNAITGLNG+GKSNILD ICF+LGI + QVRA+
Sbjct: 1 MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
LQ+L+YKNGQAG+TKASV++TFDNSDKK P+G+E + I + RQ+ I +Y+ING
Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGV 120
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ N RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160
>sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens
GN=SMC2 PE=1 SV=2
Length = 1197
Score = 223 bits (568), Expect = 4e-58, Method: Composition-based stats.
Identities = 106/160 (66%), Positives = 129/160 (80%), Gaps = 1/160 (0%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
M+IKS++L+GFKSY R E+N FD FNAITGLNG+GKSNILD ICF+LGI + QVRA+
Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
LQ+L+YKNGQAG+TKASV++TFDNSDKK P+G+E + I + RQ+ I +Y+ING
Sbjct: 61 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGV 120
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ N RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160
>sp|P50533|SMC2_XENLA Structural maintenance of chromosomes protein 2 OS=Xenopus laevis
GN=smc2 PE=1 SV=1
Length = 1203
Score = 220 bits (561), Expect = 3e-57, Method: Composition-based stats.
Identities = 104/160 (65%), Positives = 128/160 (80%), Gaps = 1/160 (0%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
M++KS+++DGFKSY R EIN FD FNAITGLNG+GKSNILD ICF+LGI + QVRA+
Sbjct: 1 MHVKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRAS 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
LQ+L+YKNGQAG+TKA+V++TFDN DKK P+G+E + I + RQ+ I +Y+ING
Sbjct: 61 NLQDLVYKNGQAGITKATVSITFDNYDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGV 120
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ N RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPE 160
>sp|Q54PK4|SMC2_DICDI Structural maintenance of chromosomes protein 2 OS=Dictyostelium
discoideum GN=smc2 PE=3 SV=1
Length = 1184
Score = 213 bits (542), Expect = 4e-55, Method: Composition-based stats.
Identities = 104/160 (65%), Positives = 125/160 (78%), Gaps = 1/160 (0%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
MYI+ +++DGFKSY R I FD FNAITGLNG+GKSNILD ICFVLGI + QVR +
Sbjct: 1 MYIEDIIIDGFKSYANRTVIEGFDPTFNAITGLNGSGKSNILDSICFVLGISNLSQVRVD 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
+LQEL+YK GQAG+TKASVT+TF+NSDKK P GYE+ + I + RQ++I +Y+ING
Sbjct: 61 SLQELVYKKGQAGITKASVTITFNNSDKKQSPAGYEHLDKITVTRQVAIGGRNKYLINGH 120
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ RV DLF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 NAQLSRVQDLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE 160
>sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis
thaliana GN=SMC2-1 PE=2 SV=2
Length = 1175
Score = 213 bits (542), Expect = 4e-55, Method: Composition-based stats.
Identities = 100/160 (62%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
M+IK + L+GFKSY TR ++ FD FNAITGLNG+GKSNILD ICFVLGI ++QVRA
Sbjct: 1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
LQEL+YK GQAG+TKA+V++TFDNS++ P+GYE I + RQI + +Y+ING
Sbjct: 61 NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYLINGK 120
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
P +V +LF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE 160
>sp|Q9SN90|SMC22_ARATH Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis
thaliana GN=SMC2-2 PE=2 SV=1
Length = 1171
Score = 209 bits (532), Expect = 6e-54, Method: Composition-based stats.
Identities = 98/160 (61%), Positives = 124/160 (77%), Gaps = 1/160 (0%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
M+IK + L+GFKSY TR + FD FNAITGLNG+GKSNILD ICFVLGI ++QVRA
Sbjct: 1 MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
LQEL+YK GQAG+T+A+V++TFDNS++ P+G+E+ + I + RQI + +Y+ING
Sbjct: 61 NLQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYLINGK 120
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
P +V +LF SV LNVNNPHFLIMQGR+TKVLNMKP E
Sbjct: 121 LAQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPME 160
>sp|P38989|SMC2_YEAST Structural maintenance of chromosomes protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC2 PE=1
SV=1
Length = 1170
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/160 (60%), Positives = 123/160 (76%), Gaps = 1/160 (0%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
M ++ +++DGFKSY TR I D+D +FNAITGLNG+GKSNILD ICFVLGI + VRA+
Sbjct: 1 MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
+LQ+LIYK GQAGVTKASVT+ FDN+DK N PIG+ N I + RQ+ + ++Y+ING
Sbjct: 61 SLQDLIYKRGQAGVTKASVTIVFDNTDKSNSPIGFTNSPQISVTRQVVLGGTSKYLINGH 120
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ V LF SV LN+NNP+FLIMQG++TKVLNMKP E
Sbjct: 121 RAPQQSVLQLFQSVQLNINNPNFLIMQGKITKVLNMKPSE 160
>sp|P41003|SMC2_SCHPO Structural maintenance of chromosomes protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut14 PE=1 SV=2
Length = 1172
Score = 190 bits (483), Expect = 3e-48, Method: Composition-based stats.
Identities = 92/160 (57%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
M I+ +++DGFKSY R I+++D +FNAITGLNG+GKSNILD ICFVLGI + VRA
Sbjct: 1 MKIEELIIDGFKSYAVRTVISNWDDQFNAITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
LQ+LIYK GQAG+T+ASVT+ F+N D + PIG+EN + + RQI + ++Y+ING
Sbjct: 61 NLQDLIYKRGQAGITRASVTIVFNNRDPASSPIGFENHPQVSVTRQIIMGGTSKYLINGH 120
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ V +LF SV LN+NNP+FLIMQGR+TKVLNMK E
Sbjct: 121 RALQQNVQNLFQSVQLNINNPNFLIMQGRITKVLNMKATE 160
>sp|Q8IED2|SMC2_PLAF7 Structural maintenance of chromosomes protein 2 OS=Plasmodium
falciparum (isolate 3D7) GN=MAL13P1.96 PE=3 SV=1
Length = 1218
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/162 (55%), Positives = 116/162 (71%), Gaps = 4/162 (2%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
MYI+ ++LDGFKSY T+ I F +FNAITGLNG+GKSN+LD ICFV+GI + +R N
Sbjct: 1 MYIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIG--YENDNTIVICRQISIPSNTRYMIN 117
L ELIYK GQAG+TK SVT+ F+N +K P+ Y + I I RQI + RY++N
Sbjct: 61 RLDELIYKQGQAGITKGSVTIKFNNEEKP-SPLQEPYRDMKNITITRQIVLGGRNRYLLN 119
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ PK +SD F S+ LN+NNPHFLIMQG++TKV+NMKP E
Sbjct: 120 SHNAKPKDISDFFQSLKLNINNPHFLIMQGKITKVINMKPIE 161
>sp|Q09591|MIX1_CAEEL Mitotic chromosome and X-chromosome-associated protein mix-1
OS=Caenorhabditis elegans GN=mix-1 PE=1 SV=2
Length = 1244
Score = 159 bits (403), Expect = 5e-39, Method: Composition-based stats.
Identities = 85/165 (51%), Positives = 109/165 (66%), Gaps = 10/165 (6%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRAN 59
M+IKS+ LDGFKSY +I DF FNAITG NG+GKSNILD ICF++GI ++ +RA
Sbjct: 1 MHIKSIHLDGFKSYQKHTDILDFSPTFNAITGYNGSGKSNILDSICFIMGINKLDNIRAK 60
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSN-----TRY 114
++ ELI G TKA V + FDN+DK+ P G E+ + IV+ R I+ + T Y
Sbjct: 61 SMHELISHGG----TKAIVQVRFDNTDKRCSPFGMEHLDEIVVQRIITAQATGKGCATSY 116
Query: 115 MINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+NG + ++ D F V LNVNNPHFLIMQGR+T VLNMKP E
Sbjct: 117 TLNGHAATNGKMQDFFRGVGLNVNNPHFLIMQGRITTVLNMKPEE 161
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
MY+K++ ++GFKS+G +V I DF+R +I G NG+GKSNILD + +VLG Q K +RA
Sbjct: 1 MYLKAVEINGFKSFGDKVYI-DFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAK 59
Query: 60 TLQELIYKNGQAG--VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
Q++I+ G+ TKA V+L DN+D+ + +ND T+ I R+I I Y+IN
Sbjct: 60 ESQDVIFSGGKEKKPATKAEVSLIIDNADR---YLDLDND-TVKITRRIHISGENEYLIN 115
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ K + LF + + +I QG+V +++N P E
Sbjct: 116 DTKSRLKEIGTLFLDTGIG-KTAYSVIGQGKVERIINSSPKE 156
>sp|Q00737|SUDA_EMENI Chromosome segregation protein sudA OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=sudA PE=2 SV=3
Length = 1215
Score = 90.5 bits (223), Expect = 4e-18, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
MY+K +++ GFKSY + I F + N I G NG+GKSN I FVL +
Sbjct: 1 MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
Q L+++ + V A V + FDNSD++ P G +V+ R I + + Y ++ +
Sbjct: 61 RQALLHEGSGSAVMSAYVEIIFDNSDER-FPTGKPE---LVLRRTIGLKKD-EYTLDRKN 115
Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
V +L S + +NP++++ QGRVT + NMK E
Sbjct: 116 ATKNDVMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSE 154
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 89.4 bits (220), Expect = 8e-18, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 8/161 (4%)
Query: 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL-GIQVKQVRANT 60
YI+ + L GFKSYG + + F + F AI G NG+GKSNI D I FVL G+ K +RA+
Sbjct: 3 YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASR 62
Query: 61 LQELIY--KNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING 118
+ +LI+ + A V + F+N D + PI +++ +VI R++ + Y +NG
Sbjct: 63 ISDLIFAGSKNEPPAKYAEVAIYFNNED-RGFPI---DEDEVVIRRRVYPDGRSSYWLNG 118
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ D+ ++ ++ + + +++QG +TK + M P E
Sbjct: 119 RRATRSEILDILTAAMISPDG-YNIVLQGDITKFIKMSPLE 158
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 89.4 bits (220), Expect = 8e-18, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
+YIK +V+ FKSY + F + F+A+ G NG+GKSN++D + FV G + KQ+R N
Sbjct: 24 LYIKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNK 83
Query: 61 LQELIYKN-GQAGVTKASVTLTFDN-SDKKNCPIGYENDNTIVICRQISIPSNTRYMING 118
+ ELI+ + + A V++ F+ D +N + +I R ++++Y IN
Sbjct: 84 VSELIHNSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITRVAFRDNSSKYYINE 143
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
S N V+ ++++N FLI+QG V ++ MKP
Sbjct: 144 RSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 182
>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4 OS=Caenorhabditis
elegans GN=smc-4 PE=1 SV=1
Length = 1549
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
+ I+++ +D FKSY + I F + F +I G NG+GKSN++D + FV G + ++R+
Sbjct: 90 LMIRNVEVDNFKSYFGKASIGPFHKSFTSIIGPNGSGKSNLIDSLLFVFGFRASKIRSAK 149
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYE--NDNTIVICRQISIPSNTRYMING 118
+ LI+K+ K +VT+ F + P YE D+ I R +++ Y I+G
Sbjct: 150 VSNLIHKSAGRNPDKCTVTIHFQRI--VDIPGHYEVVKDSEFTISRTAFQNNSSSYAIDG 207
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
V V++++ + FLI+QG V ++ MKP
Sbjct: 208 RPATKNEVEARLRRVDIDIEHNRFLILQGEVEQIAMMKP 246
>sp|Q73VM3|SMC_MYCPA Chromosome partition protein Smc OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=smc PE=3 SV=2
Length = 1196
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 92/162 (56%), Gaps = 9/162 (5%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
MY+KS+ L GFKS+ + + F+ A+ G NG+GKSN++D + +V+G Q K +R
Sbjct: 1 MYLKSLTLKGFKSFASPTTLR-FEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGG 59
Query: 60 TLQELIY--KNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
++++I+ + +A + +A VT+T DNSD PI Y + + I R++ + Y IN
Sbjct: 60 KMEDVIFAGTSSRAPLGRAEVTVTIDNSDNA-LPIEY---SEVSITRRMFRDGASEYEIN 115
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
GSS V +L S + H ++ QG++ ++L +P +
Sbjct: 116 GSSCRLMDVQELLSDSGIG-REMHVIVGQGKLDEILQSRPED 156
>sp|Q88WJ9|SMC_LACPL Chromosome partition protein Smc OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=smc PE=3 SV=1
Length = 1185
Score = 86.7 bits (213), Expect = 5e-17, Method: Composition-based stats.
Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 9/162 (5%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
M +KS+ + GFKS+ + +I DF I G NG+GKSNI++ I +VLG Q VK +R
Sbjct: 1 MQLKSLEISGFKSFADKTKI-DFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGT 59
Query: 60 TLQELIYKNG--QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
+ ++I+ + + A VT+TFDNSD P+ Y + I R++ ++ Y+IN
Sbjct: 60 KMTDVIFAGSANRKPLNMAKVTITFDNSD-HFLPLDYAE---VSITRKLFRNGDSDYLIN 115
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
S K +++L L + +I QGRV V N KP E
Sbjct: 116 NQSCRLKDITNLMIDTGLG-KDSFSVISQGRVEAVFNAKPEE 156
>sp|Q9CBT5|SMC_MYCLE Chromosome partition protein Smc OS=Mycobacterium leprae (strain
TN) GN=smc PE=3 SV=1
Length = 1203
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 91/162 (56%), Gaps = 9/162 (5%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
MY+KS+ L GFKS+ + + F+ A+ G NG+GKSN++D + +V+G Q K +R +
Sbjct: 1 MYLKSLTLKGFKSFASPTTLR-FEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGS 59
Query: 60 TLQELIYKN--GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
++++I+ +A + +A VTL DNSD PI Y + + I R++ + Y IN
Sbjct: 60 KMEDVIFAGTLSRAPLGRAEVTLIIDNSDNV-LPIEY---SEVSITRRMFRDGASEYEIN 115
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
GSS V +L S + H ++ QG++ ++L +P +
Sbjct: 116 GSSCRLMDVQELLSDSGIG-REMHVIVGQGKLDQILQSRPED 156
>sp|Q10970|SMC_MYCTU Chromosome partition protein Smc OS=Mycobacterium tuberculosis
GN=smc PE=3 SV=2
Length = 1205
Score = 85.9 bits (211), Expect = 9e-17, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 90/162 (55%), Gaps = 9/162 (5%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
MY+KS+ L GFKS+ + F+ A+ G NG+GKSN++D + +V+G Q K +R
Sbjct: 1 MYLKSLTLKGFKSFAAPTTLR-FEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGG 59
Query: 60 TLQELIY--KNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
++++I+ + +A + +A VT++ DNSD PI Y + I R++ + Y IN
Sbjct: 60 KMEDVIFAGTSSRAPLGRAEVTVSIDNSDNA-LPIEY---TEVSITRRMFRDGASEYEIN 115
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
GSS V +L S + H ++ QG++ ++L +P +
Sbjct: 116 GSSCRLMDVQELLSDSGIG-REMHVIVGQGKLEEILQSRPED 156
>sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3 OS=Arabidopsis
thaliana GN=SMC3 PE=2 SV=1
Length = 1204
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
M+IK ++++GFKSY +V +F + N + G NG+GKSN I FVL + +R+
Sbjct: 1 MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSED 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
L+++ V A V + FDNSD + P+ E I + R + + + Y ++G
Sbjct: 61 RHALLHEGAGHQVVSAFVEIVFDNSDNR-FPVDKEE---IRLRRTVGLKKDD-YFLDGKH 115
Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+ V +L S + NP++++ QG++ + MK E
Sbjct: 116 ITKGEVMNLLESAGFSRANPYYVVQQGKIASLTLMKDIE 154
>sp|P48996|DPY27_CAEEL Chromosome condensation protein dpy-27 OS=Caenorhabditis elegans
GN=dpy-27 PE=1 SV=1
Length = 1469
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 10/163 (6%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
M I ++ ++ FKSY + + F + I G NG+GKSN++D + FV G + ++R
Sbjct: 91 MIILNIYVENFKSYAGKHILGPFHKNLTMILGPNGSGKSNVIDALLFVFGFKAGKIRTKK 150
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPI----GYE--NDNTIVICRQISIPSNTRY 114
L LI N SVT+ F K+ P+ YE DN + I R I+ +N++Y
Sbjct: 151 LSALI--NSGGNYESCSVTIMFQMV--KDMPVENYDKYEVLTDNCVCITRTINRENNSKY 206
Query: 115 MINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
I+ + K V +L +++ + FLI+QG V + MKP
Sbjct: 207 RIDDKDASQKDVQELLLRAGIDMTHNRFLILQGEVEAIALMKP 249
>sp|Q81ZL2|SMC_COXBU Chromosome partition protein Smc OS=Coxiella burnetii (strain RSA
493 / Nine Mile phase I) GN=smc PE=3 SV=1
Length = 1169
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 16/167 (9%)
Query: 1 MYIKSMVLDGFKSY--GTRVEINDFDREFNAITGLNGTGKSNILDGICFVLG-IQVKQVR 57
MY+K++ L GFKS+ T + I NAI G NG GKSN++D + +V+G KQ+R
Sbjct: 1 MYLKTIKLAGFKSFVDPTLIPIRG---SMNAIVGPNGCGKSNVVDAVRWVIGETSAKQLR 57
Query: 58 ANTLQELIYKNGQAG---VTKASVTLTFDNSDKKNCPIG--YENDNTIVICRQISIPSNT 112
++ ++I+ NG V KAS+ L FDNS+ + IG Y I I R++ +
Sbjct: 58 GQSMSDVIF-NGTTSRKPVGKASIELHFDNSEGR---IGGEYAKYGEIAIRREVERDGQS 113
Query: 113 RYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
Y ING+ V + V D+F L + + ++ QG ++ ++ KP E
Sbjct: 114 NYFINGAHVRRRDVVDVFLGTGLGPRS-YAIVEQGMISNLIEAKPEE 159
>sp|B8CW13|SMC_HALOH Chromosome partition protein Smc OS=Halothermothrix orenii (strain
H 168 / OCM 544 / DSM 9562) GN=smc PE=3 SV=1
Length = 1185
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 91/162 (56%), Gaps = 9/162 (5%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
M++K + L GFKS+ + IN F+ AI G NG+GKSNI+D I +VLG Q K +R +
Sbjct: 1 MFLKKLELKGFKSFAKPITIN-FESPITAIVGPNGSGKSNIVDAIRWVLGEQSAKTLRGS 59
Query: 60 TLQELIYKNGQ--AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
+ ++I+ + + KASVTL DN DK I + +T+ I R++++ + Y +N
Sbjct: 60 RMADVIFAGSKDYKALNKASVTLYLDNQDK----ILPLDVSTVKISRKVNMDGQSDYYLN 115
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
G K + +L L + + ++ QG++ ++N +P +
Sbjct: 116 GKICRLKDIENLLMDTGLG-KDTYSIVGQGKIDSIINSRPEK 156
>sp|B8GZ28|SMC_CAUCN Chromosome partition protein Smc OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=smc PE=1 SV=1
Length = 1147
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDRE--FNAITGLNGTGKSNILDGICFVLGIQ-VKQVR 57
M + + L GFKS+ VE +F E I G NG GKSN+L+ + +V+G K +R
Sbjct: 1 MQFQRLRLSGFKSF---VEPTEFRIEPGLTGIVGPNGCGKSNLLEALRWVMGANSAKAMR 57
Query: 58 ANTLQELIYKNGQAGVTK--ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM 115
A + ++I+ A + A VTLT DN+D+ P + +D + + R+I + Y
Sbjct: 58 AGGMDDVIFAGSGARPARNHADVTLTIDNADR-TAPAQFNDDPILEVVRRIDRGEGSTYR 116
Query: 116 INGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH 158
ING V + V LF+ + N+P L+ QG++++++ KP
Sbjct: 117 INGREVRARDVQLLFADASTGANSPA-LVRQGQISELIGAKPQ 158
>sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes protein 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm3 PE=1 SV=1
Length = 1194
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 5/159 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
MYI +V+ GFKSY I N I G NG+GKSN I FVL +
Sbjct: 1 MYITKIVIQGFKSYKDYTVIEPLSPHHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLSREE 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
Q L+++ A V A V +TF N+D + P G + +V+ R I + + Y ++ +
Sbjct: 61 RQALLHEGPGATVMSAYVEVTFANADNR-FPTG---KSEVVLRRTIGLKKD-EYSLDKKT 115
Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
V+ V +L S + +NP++++ QGRVT + N K E
Sbjct: 116 VSKTEVINLLESAGFSRSNPYYIVPQGRVTSLTNAKDSE 154
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1
SV=1
Length = 1418
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
++I +VL+ FKSY + + F F+A+ G NG+GKSN++D + FV G + ++R +
Sbjct: 154 LFINELVLENFKSYAGKQVVGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMRQDR 213
Query: 61 LQELIYKNGQ-AGVTKASVTLTFDNSDKKNCPIGY--ENDNTIVICRQISIPSNTRYMIN 117
L +LI+K+ + SV + F ++ E ++I R+ ++++Y IN
Sbjct: 214 LSDLIHKSEAFPSLQSCSVAVHFQYVIDESSGTSRIDEEKPGLIITRKAFKNNSSKYYIN 273
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
+ V+ L + +++++ FLI+QG V + MKP
Sbjct: 274 EKESSYTEVTKLLKNEGIDLDHKRFLILQGEVENIAQMKP 313
>sp|O97594|SMC3_BOVIN Structural maintenance of chromosomes protein 3 OS=Bos taurus
GN=SMC3 PE=1 SV=1
Length = 1218
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
MYIK +++ GF+SY + ++ F + N I G NG+GKSN I FVL + +R
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
L+++ V A V + FDNSD + PI D V R++ +Y ++
Sbjct: 61 RLALLHEGTGPRVISAFVEIIFDNSDNR-LPI----DKEEVSLRRVIGAKKDQYFLDKKM 115
Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKV 152
V V +L S + +NP++++ QG++ ++
Sbjct: 116 VTKNDVMNLLESAGFSRSNPYYIVKQGKINQM 147
>sp|Q9CW03|SMC3_MOUSE Structural maintenance of chromosomes protein 3 OS=Mus musculus
GN=Smc3 PE=1 SV=2
Length = 1217
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
MYIK +++ GF+SY + ++ F + N I G NG+GKSN I FVL + +R
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
L+++ V A V + FDNSD + PI D V R++ +Y ++
Sbjct: 61 RLALLHEGTGPRVISAFVEIIFDNSDNR-LPI----DKEEVSLRRVIGAKKDQYFLDKKM 115
Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKV 152
V V +L S + +NP++++ QG++ ++
Sbjct: 116 VTKNDVMNLLESAGFSRSNPYYIVKQGKINQM 147
>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis
GN=smc3 PE=1 SV=2
Length = 1209
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
MYIK +++ GF+SY + ++ F + N I G NG+GKSN I FVL + +R
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
L+++ V A V + FDNSD + PI D V R++ +Y ++
Sbjct: 61 RLALLHEGTGPRVISAFVEIIFDNSDNR-LPI----DKEEVSLRRVIGAKKDQYFLDKKM 115
Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKV 152
V V +L S + +NP++++ QG++ ++
Sbjct: 116 VTKNDVMNLLESAGFSRSNPYYIVKQGKINQM 147
>sp|P97690|SMC3_RAT Structural maintenance of chromosomes protein 3 OS=Rattus
norvegicus GN=Smc3 PE=1 SV=1
Length = 1191
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
MYIK +++ GF+SY + ++ F + N I G NG+GKSN I FVL + +R
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
L+++ V A V + FDNSD + PI D V R++ +Y ++
Sbjct: 61 RLALLHEGTGPRVISAFVEIIFDNSDNR-LPI----DKEEVSLRRVIGAKKDQYFLDKKM 115
Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKV 152
V V +L S + +NP++++ QG++ ++
Sbjct: 116 VTKNDVMNLLESAGFSRSNPYYIVKQGKINQM 147
>sp|Q5R4K5|SMC3_PONAB Structural maintenance of chromosomes protein 3 OS=Pongo abelii
GN=SMC3 PE=2 SV=1
Length = 1217
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
MYIK +++ GF+SY + ++ F + N I G NG+GKSN I FVL + +R
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
L+++ V A V + FDNSD + PI D V R++ +Y ++
Sbjct: 61 RLALLHEGTGPRVISAFVEIIFDNSDNR-LPI----DKEEVSLRRVIGAKKDQYFLDKKM 115
Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKV 152
V V +L S + +NP++++ QG++ ++
Sbjct: 116 VTKNDVMNLLESAGFSRSNPYYIVKQGKINQM 147
>sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens
GN=SMC3 PE=1 SV=2
Length = 1217
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
MYIK +++ GF+SY + ++ F + N I G NG+GKSN I FVL + +R
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
L+++ V A V + FDNSD + PI D V R++ +Y ++
Sbjct: 61 RLALLHEGTGPRVISAFVEIIFDNSDNR-LPI----DKEEVSLRRVIGAKKDQYFLDKKM 115
Query: 121 VNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKV 152
V V +L S + +NP++++ QG++ ++
Sbjct: 116 VTKNDVMNLLESAGFSRSNPYYIVKQGKINQM 147
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 9/160 (5%)
Query: 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRANT 60
YI+ +V++GFKSYGT+ + F A+ G NG GKSNI D I F LG+ K +RA
Sbjct: 6 YIEKIVVEGFKSYGTKRKEIPLGEGFIAVVGPNGAGKSNIGDAISFALGLSSAKALRAKN 65
Query: 61 LQELIY-KNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
L LI+ KNGQ A V + F N P+ D +VI R++S + + ING
Sbjct: 66 LSYLIFSKNGQKA-DHAYVEVHFKNLGA--FPV---EDEEVVISRKVSKDGRSIFKINGQ 119
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
V + + D + + + ++ QG + K L M P E
Sbjct: 120 VVRERDLKDFLAKAGI-YETAYNVVYQGDIVKFLKMTPVE 158
>sp|Q54LV0|SMC4_DICDI Structural maintenance of chromosomes protein 4 OS=Dictyostelium
discoideum GN=smc4 PE=3 SV=1
Length = 1415
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
+ I MV++ FKSY E+ F + F+++ G NG+GKSN++D + FV G + KQ+R N
Sbjct: 158 LMITKMVMENFKSYAGAQEVGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGYRAKQIRLNK 217
Query: 61 LQELIY-KNGQAGVTKASVTLTFDNSDKKNCPIGYE--NDNTIVICRQISIPSN-----T 112
+ ELI+ +T V++ F YE + V+ R N +
Sbjct: 218 ISELIHNSENHKNLTNGRVSVHFQEIIDLPGEDNYEVVKGSEFVVTRTAQKTGNNKDGVS 277
Query: 113 RYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
+Y +N V + + ++++N FLI+QG V ++ MKP
Sbjct: 278 KYYLNDKVVKLDDLKTILKDKGIDLDNNRFLILQGEVEQIAMMKP 322
>sp|P41004|SMC4_SCHPO Structural maintenance of chromosomes protein 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut3 PE=1 SV=2
Length = 1324
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 1 MYIKSMVLDGFKSY-GTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN 59
+ + + L FKSY GT++ + F F++I G NG+GKSN++D + FV G + ++R +
Sbjct: 124 LVVYELRLTNFKSYAGTQI-VGPFHPSFSSIVGPNGSGKSNVIDALLFVFGFRASKLRQS 182
Query: 60 TLQELIYKNG-QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING 118
LI+K+ + V +TF N Y + + + + R + ++Y +NG
Sbjct: 183 KASALIHKSATHPSLDSCDVEITFKEV---NSDFTYVDGSELTVRRTAYKNNTSKYFVNG 239
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH 158
+ VS+L +++N+ FLI+QG V + MKP
Sbjct: 240 VESSFSAVSNLLKEKGIDLNHKRFLILQGEVESIAQMKPR 279
>sp|Q24U48|SMC_DESHY Chromosome partition protein Smc OS=Desulfitobacterium hafniense
(strain Y51) GN=smc PE=3 SV=1
Length = 1198
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 11/163 (6%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
+++KS+ + GFKS+ +V++ + + + + G NG+GKSN+ D I +VLG Q K +R +
Sbjct: 9 VFLKSITIQGFKSFADKVKL-ELGQGLSVVVGPNGSGKSNVADAIRWVLGEQSAKNLRGS 67
Query: 60 TLQELIYKNGQA--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
++++I+ V A V+L FDNS P+ Y+ ++I R++ +Y IN
Sbjct: 68 KMEDVIFSGSSVRRPVGMAEVSLFFDNSTGI-FPLEYQE---VIITRRVYRDGEGQYFIN 123
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHF-LIMQGRVTKVLNMKPHE 159
SS K + +LF ++ F +I QGRV ++LN++ E
Sbjct: 124 RSSCRLKDIHELF--MDTGAGKEGFSIIGQGRVEEILNLRSEE 164
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 77.4 bits (189), Expect = 4e-14, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 9/162 (5%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
M++K + + GFKS+ R+ + DF + A+ G NG+GKSNI D I +VLG Q + +R
Sbjct: 1 MFLKRLDVIGFKSFAERISV-DFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGG 59
Query: 60 TLQELIY--KNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
++++I+ + + + A VTLT DN D PI + + + + R++ + ++IN
Sbjct: 60 KMEDIIFAGSDSRKRLNLAEVTLTLDNDD-HFLPIDF---HEVSVTRRVYRSGESEFLIN 115
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
K + DLF L +I QG+V ++L+ K +
Sbjct: 116 NQPCRLKDIIDLFMDSGLG-KEAFSIISQGKVEEILSSKAED 156
>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1
SV=1
Length = 1230
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
MYIK +++ GFK+Y I++F N I G NG+GKSN I FVL ++
Sbjct: 1 MYIKRVIIKGFKTYRNETIIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKREE 60
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKN-CPIGY--ENDNTIVICRQISIPSNTRYMIN 117
Q LI++ V ASV + F + D P G D+ + I R + + + Y +N
Sbjct: 61 RQGLIHQGSGGSVMSASVEIVFHDPDHSMILPSGVLSRGDDEVTIRRTVGLKKDD-YQLN 119
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
+V + + + ++NNP+ ++ QG++ + N K E
Sbjct: 120 DRNVTKGDIVRMLETAGFSMNNPYNIVPQGKIVALTNAKDKE 161
>sp|Q5H054|SMC_XANOR Chromosome partition protein Smc OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=smc PE=3 SV=2
Length = 1167
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLG-IQVKQVRAN 59
M + ++ L GFKS+ ++ I G NG GKSNI+D + +V+G ++R +
Sbjct: 1 MRLSTIKLSGFKSFVDPTTLH-LPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGD 59
Query: 60 TLQELIYKNGQA--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN 117
+L ++I+ A V++A+V L FDNSD + + N I + R +S N+ Y +N
Sbjct: 60 SLTDVIFSGSSARKPVSQATVELIFDNSD-HTISGEFASFNEISVKRLVSRDGNSAYYLN 118
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
G+ + ++DLF L + + +I QG +++++ +P +
Sbjct: 119 GTKCRRRDITDLFLGTGLGPRS-YSIIEQGMISQIIEARPED 159
>sp|E1X022|SMC_BACMS Chromosome partition protein Smc OS=Bacteriovorax marinus (strain
ATCC BAA-682 / DSM 15412 / SJ) GN=smc PE=3 SV=2
Length = 1226
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59
M +K +V+ GFKS+ R I+ FD I G NG GKSNI+D + +V+G Q K +R
Sbjct: 1 MKLKRLVIQGFKSFKDRTTIH-FDDGITGIVGPNGCGKSNIVDALFWVMGEQSAKHLRGK 59
Query: 60 TLQELIYKNGQAGVTK------ASVTLTFDNSDKKNCPIGYE--NDNTIVICRQISIPSN 111
++++LI+ AG +K A TL N D K+ IG + + + I + R++
Sbjct: 60 SMKDLIF----AGSSKYNPGAYAEATLVLGNDDGKHIHIGNKVSSPSEIQLTRKLYRNGE 115
Query: 112 TRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
T Y IN K + ++F + + +I QG + +++ KP E
Sbjct: 116 TEYRINNYPARLKDIQEVFMDTGAGAKS-YSIIAQGEINRLVQAKPEE 162
>sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1
SV=1
Length = 1225
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 6 MVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELI 65
+ L FKSY ++ + F +I G NG+GKSN++D I FVLG++ +R+N L++LI
Sbjct: 7 LELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLI 66
Query: 66 YKNGQAGVTKASVTLTFDN-----SDKKNCPIG--YENDNTIV-ICRQISIPSNTRYMIN 117
Y+ GV + +DN S+ ++ + Y+ N +V + R IS +T Y I+
Sbjct: 67 YR----GVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKID 122
Query: 118 GSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
G +V+ K S + N+ + +FL+ QG V ++ P E
Sbjct: 123 GKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVE 164
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc
PE=3 SV=1
Length = 1199
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 40/188 (21%)
Query: 3 IKSMVLDGFKSY-GTRVEINDFDREFNAITGLNGTGKSNILDGICFVLG-IQVKQVRANT 60
I + L FKS+ T+++I D F AI G NG+GKSN +DGICFVLG K +RA
Sbjct: 4 ISEIHLKNFKSFKNTKLKIPDG---FTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGK 60
Query: 61 LQELI-YKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI--- 116
+LI Y NG+ A VTL FDN +++ PI + + + ICR++ + + Y +
Sbjct: 61 FNQLITYHNGKRA-DYAEVTLFFDNINRE-IPI---DSDKVGICRKVKLNGDNNYYVVWY 115
Query: 117 -------------------NGSSVNPKR------VSDLFSSVNLNVNNPHFLIMQGRVTK 151
S V +R V DL S ++L + P+ +I+QG + +
Sbjct: 116 EVEKQNTKINTESSQKKTSKASKVEKRRRMKKNEVLDLLSKISLIADGPN-IILQGDLLR 174
Query: 152 VLNMKPHE 159
+++ P+E
Sbjct: 175 IIDTSPNE 182
>sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus laevis
GN=smc1a PE=1 SV=1
Length = 1232
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL 61
++K + ++ FKSY R I F R F AI G NG+GKSN++D I FVLG + +R TL
Sbjct: 3 FLKLIEIENFKSYKGRQIIGPFHR-FTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTL 61
Query: 62 QELIYKN--GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
++LI+ G+ +A V++ + E+ + ++ + ++ Y IN
Sbjct: 62 RDLIHGAPVGKPAANRAFVSMVYS-----------EDSGEEKVFSRVIVGGSSEYKINNK 110
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
V SD + + + +FL+ QG V + P E
Sbjct: 111 VVQLSEYSDSLEKLGILIKARNFLVFQGAVESIAMKNPKE 150
>sp|Q8CG47|SMC4_MOUSE Structural maintenance of chromosomes protein 4 OS=Mus musculus
GN=Smc4 PE=1 SV=1
Length = 1286
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
+ I +V FKSY + F + F+ I G NG+GKSN++D + FV G + +++R+
Sbjct: 80 LMITHIVNQNFKSYAGEKVLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKK 139
Query: 61 LQELIYKNGQ-AGVTKASVTLTFDN-SDKKNCPIGYENDNTIVICRQISIPSNTRYMING 118
L LI+ + + + +V + F DK+ ++ + R S + Y I+G
Sbjct: 140 LSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVLPNSNFYVSRTAYRDSTSVYHISG 199
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
K V +L S +++++ FLI+QG V ++ MKP
Sbjct: 200 KKKTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIAMMKP 238
>sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1 OS=Arabidopsis
thaliana GN=SMC1 PE=2 SV=2
Length = 1218
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 23/165 (13%)
Query: 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ 62
I + ++ FKSY + F ++F AI G NG+GKSN++D I FVLG++ Q+R + L+
Sbjct: 11 ILQLEMENFKSYKGHQLVGPF-KDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69
Query: 63 ELIYKNGQAGVTKASVTLTFDNSDKKN------CPIGYENDNTIVI--CRQISIPSNTRY 114
+LIY FD+ DK+ + Y+ D+ + + R I+ + Y
Sbjct: 70 DLIY--------------AFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEY 115
Query: 115 MINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
I+ VN + S+ + V +FL+ QG V + + P E
Sbjct: 116 RIDNRVVNLDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPKE 160
>sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of chromosomes protein 4 OS=Homo sapiens
GN=SMC4 PE=1 SV=2
Length = 1288
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
+ I +V FKSY + F + F+ I G NG+GKSN++D + FV G + +++R+
Sbjct: 82 LMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKK 141
Query: 61 LQELIYKNGQ-AGVTKASVTLTFDN-SDKKNCPIGYENDNTIVICRQISIPSNTRYMING 118
L LI+ + + + +V + F DK+ ++ + R + + Y I+G
Sbjct: 142 LSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVIPNSNFYVSRTACRDNTSVYHISG 201
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
K V +L S +++++ FLI+QG V ++ MKP
Sbjct: 202 KKKTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIAMMKP 240
>sp|A9BZW2|SMC_DELAS Chromosome partition protein Smc OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=smc PE=3 SV=2
Length = 1175
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDF--DREFNAITGLNGTGKSNILDGICFVLG-IQVKQVR 57
M + S+ L GFKS+ E +F + + G NG GKSNI+D + +VLG + ++R
Sbjct: 1 MRLNSIKLSGFKSFA---EPTNFMLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELR 57
Query: 58 ANTLQELIYKNG---QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY 114
++Q++I+ NG + +++SV L FDNSD + + I + R ++ N+ Y
Sbjct: 58 GESMQDVIF-NGTTHRKPASRSSVELVFDNSDHRAGG-QWGQFGEIAVKRVLTREGNSSY 115
Query: 115 MINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
IN +V + V D+F L + +I QG +++++ +P E
Sbjct: 116 FINNQAVRRRDVQDVFLGTGLG-PRAYAIIGQGTISRIIESRPEE 159
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
+ I +V FKSY + F + F+ I G NG+GKSN++D + FV G + +++R+
Sbjct: 76 LMITHIVNQNFKSYAGERILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKK 135
Query: 61 LQELIYKNGQ-AGVTKASVTLTFDN-SDKKNCPIGYENDNTIVICRQISIPSNTRYMING 118
L LI+ + + V +V + F DK+ ++ + R +++ Y I+G
Sbjct: 136 LSVLIHNSDEHKDVQSCTVEVHFQKIIDKEGDDFEVIPNSNFYVSRTAYKDNSSVYHISG 195
Query: 119 SSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
K V L S +++++ FLI+QG V ++ MKP
Sbjct: 196 KKATFKDVGLLLRSHGIDLDHNRFLILQGEVEQIAMMKP 234
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus
norvegicus GN=Smc1a PE=1 SV=1
Length = 1233
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL 61
++K + ++ FKSY R I F R F AI G NG+GKSN++D I FVLG + +R TL
Sbjct: 3 FLKLIEIENFKSYKGRQIIGPFQR-FTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTL 61
Query: 62 QELIYKN--GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
++LI+ G+ +A V++ + + D T ++ + ++ Y IN
Sbjct: 62 RDLIHGAPVGKPAANRAFVSMVYSEEGAE--------DRTFA---RVIVGGSSEYKINNK 110
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159
V S+ + + + +FL+ QG V + P E
Sbjct: 111 VVQLHEYSEELEKLGILIKARNFLVFQGAVESIAMKNPKE 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,591,927
Number of Sequences: 539616
Number of extensions: 2185590
Number of successful extensions: 7302
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 7060
Number of HSP's gapped (non-prelim): 314
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)