Query psy17514
Match_columns 159
No_of_seqs 161 out of 2352
Neff 9.7
Searched_HMMs 46136
Date Sat Aug 17 00:30:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.6E-36 7.8E-41 210.5 -0.1 142 5-158 2-156 (240)
2 COG3839 MalK ABC-type sugar tr 100.0 1.6E-34 3.5E-39 216.9 1.0 139 4-158 2-153 (338)
3 COG3842 PotA ABC-type spermidi 100.0 1.8E-34 3.9E-39 217.7 0.7 142 1-158 1-156 (352)
4 COG1116 TauB ABC-type nitrate/ 100.0 8.4E-32 1.8E-36 192.8 5.9 135 5-158 3-150 (248)
5 COG1118 CysA ABC-type sulfate/ 100.0 6.4E-32 1.4E-36 197.6 3.2 139 6-158 3-157 (345)
6 COG1125 OpuBA ABC-type proline 100.0 5.7E-32 1.2E-36 193.5 -1.7 139 6-158 2-155 (309)
7 COG2884 FtsE Predicted ATPase 100.0 8.4E-31 1.8E-35 180.1 3.7 141 6-158 2-157 (223)
8 COG1135 AbcC ABC-type metal io 100.0 7.8E-31 1.7E-35 192.2 1.7 141 6-158 2-161 (339)
9 cd03273 ABC_SMC2_euk Eukaryoti 100.0 2.9E-26 6.2E-31 168.6 18.8 137 1-137 1-138 (251)
10 COG1136 SalX ABC-type antimicr 99.9 4.7E-30 1E-34 183.2 -1.8 141 6-158 2-162 (226)
11 COG1127 Ttg2A ABC-type transpo 99.9 5.9E-29 1.3E-33 176.7 2.8 143 5-158 8-165 (263)
12 COG1120 FepC ABC-type cobalami 99.9 3.9E-28 8.5E-33 176.4 6.7 142 5-158 2-158 (258)
13 KOG0933|consensus 99.9 4.1E-27 8.9E-32 191.5 12.2 159 1-159 1-160 (1174)
14 COG1117 PstB ABC-type phosphat 99.9 5.1E-29 1.1E-33 174.3 0.1 143 3-158 5-169 (253)
15 COG1124 DppF ABC-type dipeptid 99.9 3.5E-28 7.5E-33 173.2 4.1 141 5-158 3-161 (252)
16 COG0410 LivF ABC-type branched 99.9 1.7E-28 3.7E-33 173.6 -0.1 140 5-158 3-156 (237)
17 COG3638 ABC-type phosphate/pho 99.9 1.5E-28 3.3E-33 174.2 -1.1 143 5-158 3-167 (258)
18 COG0411 LivG ABC-type branched 99.9 6.3E-29 1.4E-33 177.0 -3.3 143 5-158 4-169 (250)
19 PRK11650 ugpC glycerol-3-phosp 99.9 6E-28 1.3E-32 185.0 -1.4 138 5-158 3-154 (356)
20 PRK11432 fbpC ferric transport 99.9 6.8E-28 1.5E-32 184.3 -1.3 140 3-158 4-156 (351)
21 TIGR03265 PhnT2 putative 2-ami 99.9 7.1E-28 1.5E-32 184.4 -2.0 139 4-158 3-154 (353)
22 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.7E-26 3.7E-31 167.2 4.2 141 4-158 3-159 (254)
23 COG4181 Predicted ABC-type tra 99.9 2.5E-26 5.3E-31 156.1 4.0 142 5-158 6-166 (228)
24 PRK09452 potA putrescine/sperm 99.9 3.1E-27 6.8E-32 181.9 -1.3 138 5-158 14-164 (375)
25 TIGR03258 PhnT 2-aminoethylpho 99.9 4.4E-27 9.5E-32 180.4 -1.6 138 5-158 5-157 (362)
26 COG1137 YhbG ABC-type (unclass 99.9 2.5E-28 5.4E-33 169.3 -8.7 142 4-158 3-159 (243)
27 PRK11607 potG putrescine trans 99.9 7.8E-27 1.7E-31 179.9 -1.4 138 5-158 19-169 (377)
28 COG1131 CcmA ABC-type multidru 99.9 1.7E-26 3.7E-31 172.9 -0.1 141 3-158 2-156 (293)
29 COG1122 CbiO ABC-type cobalt t 99.9 7.9E-26 1.7E-30 163.7 2.8 142 5-158 3-158 (235)
30 PRK11000 maltose/maltodextrin 99.9 1.9E-26 4.1E-31 177.7 -1.4 138 5-158 3-153 (369)
31 PRK10851 sulfate/thiosulfate t 99.9 3.6E-26 7.8E-31 175.0 0.0 139 6-158 3-156 (353)
32 PRK13537 nodulation ABC transp 99.9 4.1E-26 8.9E-31 172.0 0.2 143 1-158 3-158 (306)
33 TIGR02314 ABC_MetN D-methionin 99.9 2.2E-26 4.8E-31 175.3 -2.3 141 6-158 2-160 (343)
34 COG4598 HisP ABC-type histidin 99.9 5.1E-27 1.1E-31 160.7 -6.2 144 4-158 5-172 (256)
35 COG3840 ThiQ ABC-type thiamine 99.9 2.3E-25 5E-30 152.6 1.6 135 6-156 2-147 (231)
36 PRK13536 nodulation factor exp 99.9 2E-25 4.3E-30 170.2 0.3 143 1-158 37-192 (340)
37 COG4525 TauB ABC-type taurine 99.9 3E-25 6.4E-30 153.7 0.8 136 4-158 2-152 (259)
38 COG4175 ProV ABC-type proline/ 99.9 3.4E-25 7.5E-30 163.0 0.8 122 25-158 54-184 (386)
39 PRK09536 btuD corrinoid ABC tr 99.9 6E-25 1.3E-29 170.4 0.5 142 5-158 3-159 (402)
40 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 4.4E-25 9.6E-30 159.1 -0.4 141 6-158 1-160 (218)
41 cd03296 ABC_CysA_sulfate_impor 99.9 1.2E-24 2.5E-29 159.0 1.0 138 6-158 3-156 (239)
42 TIGR00960 3a0501s02 Type II (G 99.9 5E-25 1.1E-29 158.6 -1.0 141 6-158 2-158 (216)
43 cd03261 ABC_Org_Solvent_Resist 99.9 4.4E-25 9.6E-30 160.8 -1.6 142 6-158 1-156 (235)
44 cd03265 ABC_DrrA DrrA is the A 99.9 5.9E-25 1.3E-29 158.7 -1.2 138 6-158 1-151 (220)
45 cd03259 ABC_Carb_Solutes_like 99.9 5.5E-25 1.2E-29 158.1 -1.7 137 6-158 1-150 (213)
46 COG4555 NatA ABC-type Na+ tran 99.9 2.5E-25 5.4E-30 154.6 -3.8 138 6-158 2-153 (245)
47 COG1129 MglA ABC-type sugar tr 99.9 1.9E-24 4.1E-29 169.0 0.5 143 5-158 8-165 (500)
48 COG3845 ABC-type uncharacteriz 99.9 4.6E-24 9.9E-29 164.7 2.5 144 4-158 3-160 (501)
49 PRK11153 metN DL-methionine tr 99.9 5.9E-25 1.3E-29 168.0 -2.5 141 6-158 2-160 (343)
50 TIGR01186 proV glycine betaine 99.9 3.5E-25 7.6E-30 169.8 -4.0 135 12-158 1-149 (363)
51 COG1123 ATPase components of v 99.9 4.1E-24 8.9E-29 168.2 1.9 145 5-158 280-449 (539)
52 COG4148 ModC ABC-type molybdat 99.9 2.3E-23 4.9E-28 151.3 5.5 131 10-158 5-148 (352)
53 cd03218 ABC_YhbG The ABC trans 99.9 1.5E-24 3.3E-29 157.6 -0.9 140 6-158 1-153 (232)
54 TIGR01288 nodI ATP-binding ABC 99.9 2.1E-24 4.5E-29 162.7 -0.4 139 5-158 4-155 (303)
55 cd03301 ABC_MalK_N The N-termi 99.9 1.8E-24 4E-29 155.3 -0.7 137 6-158 1-150 (213)
56 COG4161 ArtP ABC-type arginine 99.9 9.6E-25 2.1E-29 147.4 -2.0 144 5-158 2-161 (242)
57 cd03293 ABC_NrtD_SsuB_transpor 99.9 2E-24 4.3E-29 155.9 -1.0 134 6-158 1-151 (220)
58 COG4674 Uncharacterized ABC-ty 99.9 3.2E-25 6.9E-30 153.4 -4.9 145 4-158 4-167 (249)
59 TIGR02315 ABC_phnC phosphonate 99.9 5.5E-24 1.2E-28 155.7 1.0 143 6-158 2-165 (243)
60 PRK11629 lolD lipoprotein tran 99.9 6.3E-24 1.4E-28 154.6 1.3 146 1-158 1-165 (233)
61 TIGR03522 GldA_ABC_ATP gliding 99.9 2.5E-24 5.3E-29 162.1 -0.9 138 6-158 3-153 (301)
62 cd03269 ABC_putative_ATPase Th 99.9 3E-24 6.6E-29 153.9 -0.6 135 6-158 1-148 (210)
63 cd03263 ABC_subfamily_A The AB 99.9 1.8E-24 3.8E-29 156.1 -1.8 138 6-158 1-153 (220)
64 PRK11247 ssuB aliphatic sulfon 99.9 2E-23 4.4E-28 153.8 3.7 129 5-158 12-153 (257)
65 cd03226 ABC_cobalt_CbiO_domain 99.9 9E-24 1.9E-28 151.0 1.7 132 7-158 1-146 (205)
66 PRK10070 glycine betaine trans 99.9 1.8E-24 3.9E-29 167.6 -2.2 142 5-158 4-184 (400)
67 PRK13635 cbiO cobalt transport 99.9 2.6E-24 5.5E-29 160.4 -1.3 145 1-158 1-160 (279)
68 cd03266 ABC_NatA_sodium_export 99.9 1.8E-24 4E-29 155.8 -2.1 138 6-158 2-156 (218)
69 TIGR02211 LolD_lipo_ex lipopro 99.9 4E-24 8.7E-29 154.4 -0.4 141 6-158 2-161 (221)
70 COG1196 Smc Chromosome segrega 99.9 9E-22 1.9E-26 169.8 13.9 153 1-159 1-156 (1163)
71 cd03262 ABC_HisP_GlnQ_permease 99.9 2.1E-24 4.5E-29 155.0 -2.0 142 6-158 1-155 (213)
72 cd03260 ABC_PstB_phosphate_tra 99.9 7.2E-24 1.6E-28 153.7 0.7 140 6-158 1-161 (227)
73 PRK11248 tauB taurine transpor 99.9 5.2E-24 1.1E-28 156.9 -0.2 134 6-158 2-148 (255)
74 cd03219 ABC_Mj1267_LivG_branch 99.9 2.4E-24 5.3E-29 156.9 -2.2 142 6-158 1-163 (236)
75 PRK09493 glnQ glutamine ABC tr 99.9 3.8E-24 8.3E-29 156.3 -1.2 142 6-158 2-156 (240)
76 PRK10908 cell division protein 99.9 4.7E-24 1E-28 154.1 -0.9 141 6-158 2-157 (222)
77 PRK13637 cbiO cobalt transport 99.9 4.5E-24 9.8E-29 159.7 -1.0 143 5-158 2-164 (287)
78 cd03268 ABC_BcrA_bacitracin_re 99.9 7.3E-24 1.6E-28 151.7 0.1 133 6-158 1-146 (208)
79 TIGR02673 FtsE cell division A 99.9 3E-24 6.4E-29 154.3 -2.0 141 6-158 2-157 (214)
80 cd03258 ABC_MetN_methionine_tr 99.9 3.3E-24 7.1E-29 156.0 -1.8 141 6-158 2-160 (233)
81 PRK14247 phosphate ABC transpo 99.9 1.2E-23 2.6E-28 154.6 0.9 142 5-158 3-166 (250)
82 cd03256 ABC_PhnC_transporter A 99.9 9.7E-24 2.1E-28 154.2 0.1 143 6-158 1-164 (241)
83 PRK10895 lipopolysaccharide AB 99.9 9.9E-24 2.1E-28 154.2 0.1 141 5-158 3-157 (241)
84 PRK11264 putative amino-acid A 99.9 1E-23 2.2E-28 154.9 -0.0 143 5-158 3-164 (250)
85 PRK13549 xylose transporter AT 99.9 8.8E-24 1.9E-28 169.1 -0.4 147 1-158 1-163 (506)
86 cd03295 ABC_OpuCA_Osmoprotecti 99.9 5.3E-24 1.1E-28 155.8 -1.6 139 6-158 1-155 (242)
87 PRK13650 cbiO cobalt transport 99.9 5.1E-24 1.1E-28 158.8 -1.8 141 5-158 4-160 (279)
88 PRK14250 phosphate ABC transpo 99.9 3.9E-23 8.5E-28 151.1 2.8 135 5-158 3-151 (241)
89 PRK13651 cobalt transporter AT 99.9 1.2E-23 2.7E-28 158.4 0.1 143 5-158 2-185 (305)
90 TIGR03608 L_ocin_972_ABC putat 99.9 4.6E-24 1E-28 152.5 -2.5 139 8-158 1-154 (206)
91 cd03264 ABC_drug_resistance_li 99.9 5.2E-24 1.1E-28 152.8 -2.2 138 6-158 1-150 (211)
92 PRK14267 phosphate ABC transpo 99.9 1.5E-23 3.3E-28 154.3 0.2 144 5-158 4-169 (253)
93 PRK10584 putative ABC transpor 99.9 9E-24 2E-28 153.2 -1.0 143 4-158 5-166 (228)
94 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.4E-23 3.1E-28 152.9 -0.0 138 6-158 2-152 (236)
95 PRK15079 oligopeptide ABC tran 99.9 5.5E-24 1.2E-28 161.8 -2.3 146 5-158 8-181 (331)
96 PRK11831 putative ABC transpor 99.9 9.4E-24 2E-28 156.7 -1.1 143 5-158 7-163 (269)
97 cd03292 ABC_FtsE_transporter F 99.9 3.3E-24 7.1E-29 154.1 -3.4 141 6-158 1-156 (214)
98 cd03224 ABC_TM1139_LivF_branch 99.9 7.4E-24 1.6E-28 153.1 -1.6 138 6-158 1-152 (222)
99 PRK11231 fecE iron-dicitrate t 99.9 2.6E-23 5.7E-28 153.2 1.2 141 6-158 3-158 (255)
100 PRK10762 D-ribose transporter 99.9 1.4E-23 3E-28 167.7 -0.3 143 5-158 4-161 (501)
101 PRK09700 D-allose transporter 99.9 1.8E-23 4E-28 167.4 0.3 147 1-158 1-165 (510)
102 PRK13636 cbiO cobalt transport 99.9 1.1E-23 2.4E-28 157.3 -1.1 147 1-158 1-161 (283)
103 PRK13634 cbiO cobalt transport 99.9 9.3E-24 2E-28 158.2 -1.8 143 5-158 2-165 (290)
104 cd03298 ABC_ThiQ_thiamine_tran 99.9 3E-23 6.5E-28 148.9 0.9 135 6-158 1-148 (211)
105 cd03235 ABC_Metallic_Cations A 99.9 3.6E-23 7.7E-28 148.7 1.2 137 7-158 1-152 (213)
106 COG4136 ABC-type uncharacteriz 99.9 4.5E-22 9.6E-27 132.9 6.3 136 6-158 3-154 (213)
107 PRK13647 cbiO cobalt transport 99.9 8.1E-24 1.7E-28 157.4 -2.3 141 5-158 4-158 (274)
108 PRK10247 putative ABC transpor 99.9 3.2E-23 7E-28 150.1 0.8 137 5-158 7-157 (225)
109 PRK10575 iron-hydroxamate tran 99.9 4.8E-23 1E-27 152.6 1.8 142 5-158 11-167 (265)
110 TIGR01188 drrA daunorubicin re 99.9 6.7E-24 1.4E-28 159.8 -2.9 132 12-158 1-144 (302)
111 PRK11614 livF leucine/isoleuci 99.9 1.2E-23 2.6E-28 153.4 -1.5 143 1-158 1-157 (237)
112 TIGR00972 3a0107s01c2 phosphat 99.9 1.9E-23 4.1E-28 153.2 -0.7 140 6-158 2-164 (247)
113 PRK10253 iron-enterobactin tra 99.9 4.7E-23 1E-27 152.6 1.3 143 4-158 6-163 (265)
114 COG4152 ABC-type uncharacteriz 99.9 7.7E-24 1.7E-28 151.1 -2.8 136 5-158 2-150 (300)
115 cd03231 ABC_CcmA_heme_exporter 99.9 8.2E-23 1.8E-27 145.7 2.4 132 6-158 1-145 (201)
116 PRK15439 autoinducer 2 ABC tra 99.9 3.8E-23 8.3E-28 165.5 0.7 137 5-158 11-160 (510)
117 TIGR03411 urea_trans_UrtD urea 99.9 2.8E-23 6.1E-28 151.9 -0.1 143 5-158 2-163 (242)
118 TIGR02142 modC_ABC molybdenum 99.9 3.1E-23 6.8E-28 159.2 0.1 133 10-158 4-151 (354)
119 PRK10619 histidine/lysine/argi 99.9 1.8E-23 3.9E-28 154.2 -1.2 147 1-158 1-172 (257)
120 cd03225 ABC_cobalt_CbiO_domain 99.9 8.2E-24 1.8E-28 151.8 -3.0 139 7-158 1-154 (211)
121 COG4604 CeuD ABC-type enteroch 99.9 4.4E-24 9.6E-29 148.0 -4.2 141 6-158 2-155 (252)
122 PRK13538 cytochrome c biogenes 99.9 3.3E-23 7.2E-28 148.0 -0.0 135 6-158 2-149 (204)
123 PRK11300 livG leucine/isoleuci 99.9 3E-23 6.5E-28 152.8 -0.4 143 5-158 5-173 (255)
124 PRK13548 hmuV hemin importer A 99.9 5.8E-23 1.2E-27 151.6 1.1 136 6-155 3-151 (258)
125 PRK13632 cbiO cobalt transport 99.9 2.6E-23 5.7E-28 154.4 -0.8 141 5-158 7-162 (271)
126 PRK13652 cbiO cobalt transport 99.9 2.1E-23 4.5E-28 155.4 -1.5 141 5-158 3-157 (277)
127 PRK11124 artP arginine transpo 99.9 3E-23 6.6E-28 151.7 -0.6 143 5-158 2-161 (242)
128 PRK14241 phosphate transporter 99.9 3.7E-23 8E-28 152.6 -0.2 144 4-158 3-168 (258)
129 PRK11144 modC molybdate transp 99.9 6.1E-23 1.3E-27 157.4 0.9 132 6-158 2-148 (352)
130 PRK13540 cytochrome c biogenes 99.9 9.8E-23 2.1E-27 145.1 1.9 133 6-158 2-147 (200)
131 PRK11701 phnK phosphonate C-P 99.9 6.4E-23 1.4E-27 151.4 1.0 147 3-158 4-171 (258)
132 PRK13640 cbiO cobalt transport 99.9 1.6E-23 3.5E-28 156.3 -2.2 145 1-158 1-163 (282)
133 PRK13638 cbiO cobalt transport 99.9 1.7E-23 3.7E-28 155.5 -2.4 142 6-158 2-156 (271)
134 PRK13644 cbiO cobalt transport 99.9 2.9E-23 6.4E-28 154.4 -1.2 141 6-158 2-156 (274)
135 PRK13646 cbiO cobalt transport 99.9 2.1E-23 4.5E-28 156.0 -2.1 142 6-158 3-165 (286)
136 PRK14235 phosphate transporter 99.9 9E-23 1.9E-27 151.3 1.2 142 5-158 19-183 (267)
137 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.8E-23 3.9E-28 155.2 -2.6 140 7-158 26-180 (269)
138 PRK13648 cbiO cobalt transport 99.9 3E-23 6.6E-28 154.0 -1.6 145 1-158 3-162 (269)
139 PRK09984 phosphonate/organopho 99.9 9.9E-23 2.2E-27 150.7 1.2 144 5-158 4-172 (262)
140 TIGR01189 ccmA heme ABC export 99.9 7.5E-23 1.6E-27 145.5 0.4 134 6-158 1-147 (198)
141 PRK13643 cbiO cobalt transport 99.8 3.6E-23 7.7E-28 154.9 -1.7 142 6-158 2-164 (288)
142 TIGR03005 ectoine_ehuA ectoine 99.8 9.3E-23 2E-27 150.0 0.6 142 6-158 1-166 (252)
143 PRK14273 phosphate ABC transpo 99.8 1.2E-22 2.5E-27 149.6 1.0 142 5-158 7-170 (254)
144 PRK10744 pstB phosphate transp 99.8 1.4E-22 3E-27 149.7 1.3 142 5-158 13-176 (260)
145 PRK15093 antimicrobial peptide 99.8 3.7E-23 7.9E-28 157.5 -1.9 146 5-158 3-178 (330)
146 PRK13641 cbiO cobalt transport 99.8 3.9E-23 8.5E-28 154.7 -1.7 143 5-158 2-165 (287)
147 TIGR01277 thiQ thiamine ABC tr 99.8 1.2E-22 2.6E-27 146.0 0.7 135 6-158 1-148 (213)
148 PRK13633 cobalt transporter AT 99.8 8.4E-23 1.8E-27 152.4 -0.2 142 5-158 4-164 (280)
149 PRK13631 cbiO cobalt transport 99.8 8.4E-23 1.8E-27 154.8 -0.2 143 5-158 21-196 (320)
150 PRK14242 phosphate transporter 99.8 1.1E-22 2.5E-27 149.6 0.4 142 5-158 6-169 (253)
151 PRK14256 phosphate ABC transpo 99.8 2.1E-22 4.6E-27 148.1 1.8 143 5-158 4-168 (252)
152 PRK11288 araG L-arabinose tran 99.8 7.8E-23 1.7E-27 163.5 -0.6 143 5-158 4-160 (501)
153 TIGR03740 galliderm_ABC gallid 99.8 1.9E-22 4.1E-27 145.9 1.5 131 6-158 1-144 (223)
154 TIGR03873 F420-0_ABC_ATP propo 99.8 8.9E-23 1.9E-27 150.5 -0.3 141 6-158 2-157 (256)
155 COG4619 ABC-type uncharacteriz 99.8 2.5E-23 5.4E-28 141.1 -2.9 136 6-158 4-153 (223)
156 PRK10771 thiQ thiamine transpo 99.8 2.2E-22 4.7E-27 146.4 1.5 135 6-158 2-149 (232)
157 PRK14269 phosphate ABC transpo 99.8 1.8E-22 4E-27 148.0 1.0 140 6-158 3-162 (246)
158 TIGR03415 ABC_choXWV_ATP choli 99.8 2.8E-23 6.1E-28 160.0 -3.6 136 12-158 32-184 (382)
159 cd03257 ABC_NikE_OppD_transpor 99.8 8.4E-23 1.8E-27 148.0 -1.0 144 6-158 2-165 (228)
160 PRK11022 dppD dipeptide transp 99.8 5.5E-23 1.2E-27 156.2 -2.0 145 5-158 3-173 (326)
161 PRK14270 phosphate ABC transpo 99.8 2E-22 4.3E-27 148.2 0.9 142 5-158 4-167 (251)
162 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.7E-19 3.7E-24 131.9 16.4 129 3-136 1-129 (243)
163 PRK11308 dppF dipeptide transp 99.8 6.2E-23 1.4E-27 155.9 -2.0 145 5-158 5-174 (327)
164 TIGR02982 heterocyst_DevA ABC 99.8 7.1E-23 1.5E-27 147.8 -1.8 142 6-158 2-161 (220)
165 PRK13639 cbiO cobalt transport 99.8 7.7E-23 1.7E-27 152.2 -1.9 142 6-158 2-157 (275)
166 PRK14262 phosphate ABC transpo 99.8 1.8E-22 4E-27 148.3 0.0 142 5-158 3-166 (250)
167 TIGR02868 CydC thiol reductant 99.8 4.6E-22 9.9E-27 160.0 2.2 132 5-158 334-490 (529)
168 PRK14274 phosphate ABC transpo 99.8 3.3E-22 7.1E-27 147.7 1.2 143 4-158 11-175 (259)
169 PRK14239 phosphate transporter 99.8 1.9E-22 4.1E-27 148.3 -0.3 146 1-158 1-168 (252)
170 PRK14259 phosphate ABC transpo 99.8 4.1E-22 8.9E-27 147.9 1.5 140 5-158 13-174 (269)
171 PRK15056 manganese/iron transp 99.8 3.9E-21 8.5E-26 142.9 6.7 141 5-158 6-162 (272)
172 COG0444 DppD ABC-type dipeptid 99.8 2.2E-22 4.7E-27 149.0 -0.3 145 6-158 2-173 (316)
173 TIGR00968 3a0106s01 sulfate AB 99.8 2.5E-22 5.4E-27 146.5 -0.0 137 6-158 1-150 (237)
174 PRK13539 cytochrome c biogenes 99.8 3.6E-22 7.7E-27 143.0 0.7 132 6-158 3-147 (207)
175 PRK14240 phosphate transporter 99.8 3.3E-22 7.2E-27 146.9 0.6 142 5-158 3-166 (250)
176 cd03300 ABC_PotA_N PotA is an 99.8 1.6E-22 3.6E-27 147.0 -1.0 137 6-158 1-150 (232)
177 PRK14248 phosphate ABC transpo 99.8 4.9E-22 1.1E-26 147.4 1.4 142 5-158 21-184 (268)
178 TIGR02769 nickel_nikE nickel i 99.8 1.7E-22 3.6E-27 149.7 -1.2 145 5-158 2-170 (265)
179 PRK14268 phosphate ABC transpo 99.8 2E-22 4.2E-27 148.8 -0.9 142 4-158 11-174 (258)
180 PRK14237 phosphate transporter 99.8 4.8E-22 1E-26 147.4 1.0 142 5-158 20-183 (267)
181 TIGR01166 cbiO cobalt transpor 99.8 8E-23 1.7E-27 144.5 -3.0 133 15-158 3-147 (190)
182 PRK14251 phosphate ABC transpo 99.8 3.9E-22 8.4E-27 146.6 0.1 142 5-158 4-167 (251)
183 PRK14272 phosphate ABC transpo 99.8 4.8E-22 1E-26 146.2 0.6 144 4-158 3-168 (252)
184 PRK14254 phosphate ABC transpo 99.8 5.8E-22 1.3E-26 148.2 1.0 140 5-158 39-200 (285)
185 PRK13642 cbiO cobalt transport 99.8 2.2E-22 4.8E-27 149.9 -1.3 141 5-158 4-160 (277)
186 PRK14261 phosphate ABC transpo 99.8 7.3E-22 1.6E-26 145.3 1.4 141 5-158 6-169 (253)
187 TIGR02324 CP_lyasePhnL phospho 99.8 5.5E-22 1.2E-26 143.5 0.7 142 6-158 2-169 (224)
188 PRK13543 cytochrome c biogenes 99.8 5.7E-22 1.2E-26 142.6 0.8 134 5-158 11-157 (214)
189 PRK15112 antimicrobial peptide 99.8 3.9E-22 8.5E-27 147.9 -0.2 143 5-158 4-169 (267)
190 TIGR01978 sufC FeS assembly AT 99.8 3.4E-22 7.4E-27 146.2 -0.5 142 6-158 1-164 (243)
191 PRK14249 phosphate ABC transpo 99.8 7.1E-22 1.5E-26 145.2 1.2 141 5-158 4-167 (251)
192 cd03299 ABC_ModC_like Archeal 99.8 2.6E-22 5.5E-27 146.3 -1.2 136 6-158 1-149 (235)
193 PRK09544 znuC high-affinity zi 99.8 3E-21 6.5E-26 141.9 4.2 122 5-158 4-140 (251)
194 PRK14260 phosphate ABC transpo 99.8 7.3E-22 1.6E-26 145.8 0.9 143 4-158 6-170 (259)
195 PRK13547 hmuV hemin importer A 99.8 6.4E-22 1.4E-26 147.0 0.5 138 6-155 2-162 (272)
196 PRK13649 cbiO cobalt transport 99.8 3.3E-22 7.2E-27 149.2 -1.2 142 6-158 3-165 (280)
197 TIGR03269 met_CoM_red_A2 methy 99.8 1.5E-21 3.3E-26 156.7 2.2 143 6-158 1-188 (520)
198 TIGR03410 urea_trans_UrtE urea 99.8 1.8E-22 3.9E-27 146.6 -2.9 137 6-158 1-151 (230)
199 cd03275 ABC_SMC1_euk Eukaryoti 99.8 7.8E-19 1.7E-23 128.9 16.3 143 3-157 1-145 (247)
200 PRK14253 phosphate ABC transpo 99.8 1.1E-21 2.4E-26 144.1 1.1 141 5-158 3-165 (249)
201 PRK14243 phosphate transporter 99.8 2.4E-21 5.2E-26 143.5 2.8 140 5-158 10-171 (264)
202 PRK14275 phosphate ABC transpo 99.8 1E-21 2.2E-26 147.0 0.7 142 5-158 39-202 (286)
203 PRK13645 cbiO cobalt transport 99.8 4.6E-22 9.9E-27 149.0 -1.2 143 5-158 6-170 (289)
204 PRK10418 nikD nickel transport 99.8 2E-21 4.4E-26 143.1 2.2 137 5-158 4-160 (254)
205 PRK09473 oppD oligopeptide tra 99.8 2.9E-22 6.2E-27 152.4 -2.4 145 5-158 12-181 (330)
206 TIGR02633 xylG D-xylose ABC tr 99.8 5.1E-22 1.1E-26 158.8 -1.2 140 6-158 2-161 (500)
207 PRK10982 galactose/methyl gala 99.8 4.4E-22 9.6E-27 158.8 -1.5 140 8-158 1-154 (491)
208 PRK14266 phosphate ABC transpo 99.8 1.6E-21 3.4E-26 143.3 1.4 141 6-158 4-166 (250)
209 PRK11819 putative ABC transpor 99.8 3.5E-21 7.6E-26 155.6 3.3 133 3-158 4-183 (556)
210 PRK14245 phosphate ABC transpo 99.8 1.3E-21 2.7E-26 143.9 0.5 142 5-158 3-166 (250)
211 PRK10938 putative molybdenum t 99.8 2.9E-21 6.3E-26 154.1 2.6 140 5-158 3-155 (490)
212 PRK10261 glutathione transport 99.8 5.4E-22 1.2E-26 162.1 -1.8 145 5-158 313-483 (623)
213 PRK14244 phosphate ABC transpo 99.8 2E-21 4.3E-26 142.9 1.3 142 5-158 5-169 (251)
214 COG4167 SapF ABC-type antimicr 99.8 1.5E-21 3.2E-26 134.4 0.5 143 5-158 4-169 (267)
215 PRK10419 nikE nickel transport 99.8 9E-22 1.9E-26 146.0 -0.7 145 5-158 3-171 (268)
216 TIGR02323 CP_lyasePhnK phospho 99.8 1.7E-21 3.6E-26 143.4 0.7 145 5-158 3-168 (253)
217 PRK13541 cytochrome c biogenes 99.8 3.3E-21 7.2E-26 136.8 2.0 129 6-158 2-143 (195)
218 PRK14258 phosphate ABC transpo 99.8 2.2E-21 4.8E-26 143.4 1.1 144 3-158 5-170 (261)
219 PRK10261 glutathione transport 99.8 2.7E-21 5.9E-26 158.0 1.2 146 5-158 12-188 (623)
220 PRK14246 phosphate ABC transpo 99.8 1.8E-21 3.9E-26 143.6 0.2 142 5-158 10-173 (257)
221 PRK14236 phosphate transporter 99.8 2.3E-21 4.9E-26 144.2 0.6 142 5-158 25-188 (272)
222 PRK14264 phosphate ABC transpo 99.8 3.2E-21 6.8E-26 145.5 1.2 143 5-158 45-220 (305)
223 COG2274 SunT ABC-type bacterio 99.8 4.6E-21 1E-25 157.1 2.1 133 5-158 471-629 (709)
224 PRK14238 phosphate transporter 99.8 2E-21 4.4E-26 144.3 -0.0 142 5-158 24-187 (271)
225 PRK14271 phosphate ABC transpo 99.8 2.5E-21 5.4E-26 144.2 0.3 141 5-158 21-183 (276)
226 cd03245 ABCC_bacteriocin_expor 99.8 3.8E-21 8.3E-26 138.7 1.1 133 5-158 2-160 (220)
227 TIGR01257 rim_protein retinal- 99.8 2E-21 4.3E-26 172.1 -0.6 139 5-158 928-1081(2272)
228 cd03297 ABC_ModC_molybdenum_tr 99.8 1.6E-21 3.4E-26 140.3 -1.2 133 10-158 5-151 (214)
229 KOG0996|consensus 99.8 2.3E-19 5E-24 148.7 11.3 156 2-158 85-243 (1293)
230 cd03229 ABC_Class3 This class 99.8 4.8E-21 1E-25 134.1 1.1 93 6-108 1-99 (178)
231 COG1123 ATPase components of v 99.8 4.1E-21 8.9E-26 151.4 0.8 148 2-158 2-174 (539)
232 PRK14265 phosphate ABC transpo 99.8 5.9E-21 1.3E-25 142.1 1.6 140 5-158 20-181 (274)
233 cd03244 ABCC_MRP_domain2 Domai 99.8 9.9E-21 2.1E-25 136.7 2.2 132 5-158 2-159 (221)
234 PRK14255 phosphate ABC transpo 99.8 4.2E-21 9.1E-26 141.2 0.2 142 5-158 5-168 (252)
235 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 6.7E-21 1.4E-25 157.4 1.2 132 5-158 451-608 (686)
236 PRK15134 microcin C ABC transp 99.8 3.3E-21 7.2E-26 155.0 -0.7 146 4-158 4-176 (529)
237 cd03250 ABCC_MRP_domain1 Domai 99.8 4.6E-20 9.9E-25 131.7 5.2 118 6-158 1-147 (204)
238 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1E-20 2.2E-25 156.8 1.9 133 5-158 477-635 (710)
239 cd03248 ABCC_TAP TAP, the Tran 99.8 7.2E-21 1.6E-25 137.8 0.8 140 5-158 11-170 (226)
240 cd03254 ABCC_Glucan_exporter_l 99.8 7.1E-21 1.5E-25 138.1 0.8 133 5-158 2-159 (229)
241 KOG0057|consensus 99.8 3.7E-20 8E-25 144.7 4.7 132 5-158 351-507 (591)
242 PRK14263 phosphate ABC transpo 99.8 1.3E-20 2.8E-25 139.3 2.1 140 5-158 8-169 (261)
243 PRK15134 microcin C ABC transp 99.8 4.2E-21 9.1E-26 154.4 -0.6 145 5-158 275-445 (529)
244 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 3.3E-20 7.1E-25 149.9 4.6 128 5-158 322-463 (552)
245 cd03230 ABC_DR_subfamily_A Thi 99.8 7.8E-21 1.7E-25 132.5 0.8 88 6-106 1-94 (173)
246 cd03267 ABC_NatA_like Similar 99.8 2.9E-21 6.2E-26 140.9 -1.5 133 12-158 29-173 (236)
247 TIGR01193 bacteriocin_ABC ABC- 99.8 9.7E-21 2.1E-25 156.9 1.4 134 5-158 473-631 (708)
248 cd03251 ABCC_MsbA MsbA is an e 99.8 1.3E-20 2.7E-25 137.2 1.8 136 6-158 1-158 (234)
249 PRK15064 ABC transporter ATP-b 99.8 4.4E-20 9.6E-25 148.6 4.9 126 5-158 319-458 (530)
250 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.5E-20 3.2E-25 139.8 2.0 131 5-158 2-158 (275)
251 cd03252 ABCC_Hemolysin The ABC 99.8 1.6E-20 3.4E-25 137.0 2.1 132 6-158 1-158 (237)
252 PRK11174 cysteine/glutathione 99.8 7.7E-21 1.7E-25 154.6 0.3 132 5-158 349-505 (588)
253 KOG0058|consensus 99.8 4.2E-20 9E-25 148.4 4.4 133 5-158 465-624 (716)
254 PRK11176 lipid transporter ATP 99.8 1.3E-20 2.7E-25 153.2 1.5 134 5-158 341-500 (582)
255 PRK11819 putative ABC transpor 99.8 4.7E-20 1E-24 149.1 4.7 128 5-158 324-465 (556)
256 cd03369 ABCC_NFT1 Domain 2 of 99.8 3.2E-20 7E-25 132.8 3.3 128 5-158 6-145 (207)
257 KOG0018|consensus 99.8 1.7E-19 3.6E-24 148.5 7.8 142 2-159 3-144 (1141)
258 PRK09700 D-allose transporter 99.8 5.9E-21 1.3E-25 153.0 -0.6 144 5-158 265-429 (510)
259 TIGR03269 met_CoM_red_A2 methy 99.8 1E-20 2.2E-25 151.9 0.7 142 5-158 279-447 (520)
260 PRK15064 ABC transporter ATP-b 99.8 1.9E-20 4E-25 150.8 2.2 130 6-158 2-175 (530)
261 PRK11160 cysteine/glutathione 99.8 1.6E-20 3.4E-25 152.4 1.6 133 5-158 338-495 (574)
262 PRK13549 xylose transporter AT 99.8 4.7E-21 1E-25 153.4 -1.5 146 5-158 259-425 (506)
263 TIGR01257 rim_protein retinal- 99.8 6E-21 1.3E-25 169.1 -1.1 139 5-158 1937-2090(2272)
264 COG4559 ABC-type hemin transpo 99.8 6.4E-21 1.4E-25 133.7 -0.9 136 6-155 2-152 (259)
265 TIGR02633 xylG D-xylose ABC tr 99.8 5.3E-21 1.2E-25 152.9 -1.6 146 5-158 257-423 (500)
266 cd03234 ABCG_White The White s 99.8 7.9E-21 1.7E-25 137.7 -0.7 138 6-158 4-163 (226)
267 PRK10790 putative multidrug tr 99.8 2E-20 4.4E-25 152.3 1.5 132 5-158 340-496 (592)
268 TIGR02857 CydD thiol reductant 99.8 2.3E-20 5E-25 150.2 1.6 133 5-158 320-478 (529)
269 CHL00131 ycf16 sulfate ABC tra 99.8 4.4E-20 9.5E-25 135.8 3.0 143 5-158 7-171 (252)
270 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 5.6E-20 1.2E-24 148.6 3.9 131 5-158 4-181 (552)
271 PRK14252 phosphate ABC transpo 99.8 2.1E-20 4.5E-25 138.5 1.2 142 5-158 16-181 (265)
272 TIGR00958 3a01208 Conjugate Tr 99.8 3.5E-20 7.7E-25 153.5 2.3 133 5-158 478-637 (711)
273 KOG0055|consensus 99.8 3E-20 6.5E-25 156.4 1.8 133 5-158 350-509 (1228)
274 PRK13657 cyclic beta-1,2-gluca 99.8 3E-20 6.6E-25 151.2 1.7 133 5-158 334-491 (588)
275 COG1132 MdlB ABC-type multidru 99.8 3.3E-20 7.2E-25 150.4 1.4 133 5-158 328-485 (567)
276 cd03290 ABCC_SUR1_N The SUR do 99.8 7.6E-20 1.6E-24 131.9 3.1 132 7-158 2-160 (218)
277 PRK11147 ABC transporter ATPas 99.8 1.1E-19 2.3E-24 149.0 4.3 128 5-158 319-460 (635)
278 PRK14257 phosphate ABC transpo 99.8 2.3E-20 5.1E-25 141.9 0.3 141 5-158 80-245 (329)
279 cd03233 ABC_PDR_domain1 The pl 99.8 2.9E-20 6.2E-25 132.7 0.7 119 5-158 3-138 (202)
280 COG4988 CydD ABC-type transpor 99.8 7.9E-20 1.7E-24 144.0 3.2 132 6-158 321-476 (559)
281 cd03223 ABCD_peroxisomal_ALDP 99.8 9.1E-20 2E-24 126.3 3.0 79 6-108 1-86 (166)
282 cd03253 ABCC_ATM1_transporter 99.8 3E-20 6.5E-25 135.4 0.6 132 6-158 1-157 (236)
283 TIGR02168 SMC_prok_B chromosom 99.8 4E-18 8.7E-23 147.3 13.7 151 3-158 2-155 (1179)
284 cd03247 ABCC_cytochrome_bd The 99.8 5E-20 1.1E-24 129.0 1.4 76 6-85 1-84 (178)
285 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 3.8E-20 8.3E-25 135.0 0.8 132 6-158 1-159 (238)
286 COG4172 ABC-type uncharacteriz 99.8 5E-20 1.1E-24 139.8 1.4 133 17-158 300-446 (534)
287 TIGR03375 type_I_sec_LssB type 99.8 4.7E-20 1E-24 152.5 1.0 133 5-158 463-621 (694)
288 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 9.1E-21 2E-25 137.2 -3.0 130 3-158 20-162 (224)
289 cd03246 ABCC_Protease_Secretio 99.8 5.4E-20 1.2E-24 128.2 0.5 88 6-106 1-96 (173)
290 PRK09580 sufC cysteine desulfu 99.8 1.5E-19 3.2E-24 132.7 2.5 142 6-158 2-165 (248)
291 PRK10535 macrolide transporter 99.8 2.2E-20 4.8E-25 153.2 -2.1 142 5-158 4-164 (648)
292 TIGR02203 MsbA_lipidA lipid A 99.8 1.1E-19 2.3E-24 147.4 1.9 134 5-158 330-489 (571)
293 TIGR01184 ntrCD nitrate transp 99.8 1.2E-20 2.7E-25 137.1 -3.3 117 25-158 11-134 (230)
294 cd03213 ABCG_EPDR ABCG transpo 99.8 4.5E-20 9.9E-25 130.9 -0.4 89 5-108 3-105 (194)
295 COG0396 sufC Cysteine desulfur 99.8 1E-19 2.2E-24 129.0 0.8 143 5-158 3-164 (251)
296 COG1119 ModF ABC-type molybden 99.8 2.3E-19 5.1E-24 128.3 2.6 145 5-158 31-191 (257)
297 cd03228 ABCC_MRP_Like The MRP 99.8 7.8E-20 1.7E-24 127.2 0.1 88 6-106 1-96 (171)
298 TIGR02770 nickel_nikD nickel i 99.8 6.8E-20 1.5E-24 133.1 -0.6 120 25-158 12-145 (230)
299 PLN03211 ABC transporter G-25; 99.8 5.7E-20 1.2E-24 150.7 -1.2 133 8-158 71-226 (659)
300 TIGR02204 MsbA_rel ABC transpo 99.8 1.7E-19 3.8E-24 146.4 1.6 133 5-158 337-496 (576)
301 cd03232 ABC_PDR_domain2 The pl 99.8 8.6E-20 1.9E-24 129.2 -0.2 88 5-108 3-102 (192)
302 TIGR01187 potA spermidine/putr 99.8 1.2E-20 2.7E-25 143.4 -5.0 113 30-158 1-120 (325)
303 PTZ00265 multidrug resistance 99.8 2.1E-19 4.6E-24 157.4 2.0 133 5-158 1165-1378(1466)
304 cd03288 ABCC_SUR2 The SUR doma 99.8 3E-19 6.6E-24 131.7 2.4 132 5-158 19-176 (257)
305 KOG0964|consensus 99.7 1.6E-17 3.5E-22 135.8 12.3 150 1-155 1-150 (1200)
306 COG4608 AppF ABC-type oligopep 99.7 1.9E-18 4.1E-23 125.6 6.3 103 5-158 4-129 (268)
307 PRK10789 putative multidrug tr 99.7 2.4E-19 5.3E-24 145.4 1.8 133 5-158 313-471 (569)
308 TIGR01842 type_I_sec_PrtD type 99.7 2.3E-19 5E-24 144.8 1.6 133 5-158 316-474 (544)
309 cd03215 ABC_Carb_Monos_II This 99.7 7.4E-20 1.6E-24 128.6 -1.3 92 5-108 4-101 (182)
310 TIGR01192 chvA glucan exporter 99.7 2.9E-19 6.2E-24 145.3 1.5 133 5-158 334-491 (585)
311 TIGR00954 3a01203 Peroxysomal 99.7 8.9E-19 1.9E-23 144.0 4.2 129 5-158 451-602 (659)
312 COG4133 CcmA ABC-type transpor 99.7 8.2E-20 1.8E-24 125.8 -1.6 134 6-157 3-149 (209)
313 KOG0055|consensus 99.7 3.9E-19 8.4E-24 149.8 2.0 133 5-158 987-1146(1228)
314 TIGR01846 type_I_sec_HlyB type 99.7 2.1E-19 4.5E-24 148.7 0.3 133 5-158 455-613 (694)
315 PRK10938 putative molybdenum t 99.7 1.5E-19 3.2E-24 144.3 -0.8 143 5-158 260-421 (490)
316 cd03217 ABC_FeS_Assembly ABC-t 99.7 2E-19 4.4E-24 128.1 -0.7 78 6-85 1-86 (200)
317 cd03236 ABC_RNaseL_inhibitor_d 99.7 6.5E-19 1.4E-23 129.7 2.0 132 9-158 4-159 (255)
318 PRK10522 multidrug transporter 99.7 8.9E-19 1.9E-23 141.5 2.7 129 5-158 322-469 (547)
319 PRK03695 vitamin B12-transport 99.7 1.1E-19 2.3E-24 133.5 -2.5 121 19-155 11-143 (248)
320 PLN03232 ABC transporter C fam 99.7 5.6E-19 1.2E-23 155.4 1.3 132 5-158 1234-1391(1495)
321 PRK10762 D-ribose transporter 99.7 1.3E-19 2.9E-24 144.9 -2.5 141 5-158 257-415 (501)
322 PRK13409 putative ATPase RIL; 99.7 2E-18 4.4E-23 140.1 4.3 121 5-158 340-473 (590)
323 PLN03130 ABC transporter C fam 99.7 5.8E-19 1.3E-23 155.8 1.0 132 5-158 1237-1394(1622)
324 PF02463 SMC_N: RecF/RecN/SMC 99.7 1.7E-16 3.7E-21 114.5 13.5 137 2-145 1-139 (220)
325 PTZ00265 multidrug resistance 99.7 1.1E-18 2.5E-23 152.8 2.5 93 5-109 382-483 (1466)
326 PRK10636 putative ABC transpor 99.7 2.5E-18 5.5E-23 140.9 4.3 125 5-158 312-450 (638)
327 PRK11288 araG L-arabinose tran 99.7 2.1E-19 4.6E-24 143.8 -2.2 142 6-158 258-416 (501)
328 TIGR01194 cyc_pep_trnsptr cycl 99.7 1.3E-18 2.7E-23 140.8 1.8 130 5-158 337-490 (555)
329 TIGR03771 anch_rpt_ABC anchore 99.7 1.3E-18 2.8E-23 125.9 1.4 119 25-158 6-133 (223)
330 cd03214 ABC_Iron-Siderophores_ 99.7 3.4E-19 7.4E-24 125.0 -1.8 54 7-60 1-60 (180)
331 COG4172 ABC-type uncharacteriz 99.7 1.4E-18 3.1E-23 132.0 1.4 148 2-158 3-177 (534)
332 PRK10982 galactose/methyl gala 99.7 5.5E-19 1.2E-23 141.1 -1.2 143 5-158 250-411 (491)
333 TIGR00956 3a01205 Pleiotropic 99.7 1.4E-18 3.1E-23 151.9 1.2 135 6-158 760-921 (1394)
334 PLN03073 ABC transporter F fam 99.7 6.6E-18 1.4E-22 139.5 4.9 125 5-158 508-647 (718)
335 cd03291 ABCC_CFTR1 The CFTR su 99.7 8.6E-18 1.9E-22 125.4 4.8 117 5-158 39-179 (282)
336 KOG0056|consensus 99.7 1.3E-17 2.7E-22 129.7 5.5 133 5-158 537-694 (790)
337 PTZ00243 ABC transporter; Prov 99.7 2.9E-18 6.3E-23 151.1 1.9 132 5-158 1308-1466(1560)
338 cd03216 ABC_Carb_Monos_I This 99.7 4.9E-18 1.1E-22 117.3 2.5 55 6-60 1-61 (163)
339 COG1101 PhnK ABC-type uncharac 99.7 2.4E-19 5.2E-24 126.1 -4.1 143 6-158 2-168 (263)
340 PRK13545 tagH teichoic acids e 99.7 5.5E-18 1.2E-22 134.3 2.8 126 6-158 22-163 (549)
341 PRK15439 autoinducer 2 ABC tra 99.7 7.5E-19 1.6E-23 140.9 -2.5 142 5-158 268-423 (510)
342 PRK13546 teichoic acids export 99.7 5.2E-18 1.1E-22 125.5 2.1 127 5-158 4-163 (264)
343 TIGR00957 MRP_assoc_pro multi 99.7 4E-18 8.7E-23 150.3 1.6 132 5-158 1284-1441(1522)
344 PRK11147 ABC transporter ATPas 99.7 6.7E-18 1.5E-22 138.5 2.6 56 5-60 3-64 (635)
345 cd03237 ABC_RNaseL_inhibitor_d 99.7 6.8E-18 1.5E-22 123.8 1.8 104 25-158 25-135 (246)
346 COG4107 PhnK ABC-type phosphon 99.7 1.7E-17 3.7E-22 113.6 3.1 142 5-158 6-171 (258)
347 cd03278 ABC_SMC_barmotin Barmo 99.7 4.6E-16 9.9E-21 110.6 10.3 121 4-154 2-129 (197)
348 COG0488 Uup ATPase components 99.7 4.9E-18 1.1E-22 135.5 -0.1 130 5-158 3-173 (530)
349 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 8E-17 1.7E-21 109.1 5.4 55 6-60 1-61 (144)
350 PRK10636 putative ABC transpor 99.7 1.2E-17 2.6E-22 137.0 1.5 139 6-158 2-169 (638)
351 PRK13409 putative ATPase RIL; 99.7 1.7E-17 3.6E-22 134.8 2.3 130 11-158 79-232 (590)
352 COG4987 CydC ABC-type transpor 99.7 7.4E-18 1.6E-22 131.7 -0.2 132 5-157 336-493 (573)
353 PF00005 ABC_tran: ABC transpo 99.7 2.3E-19 4.9E-24 120.4 -7.6 107 25-158 11-128 (137)
354 TIGR02169 SMC_prok_A chromosom 99.7 3.4E-15 7.4E-20 129.4 16.1 147 3-158 2-153 (1164)
355 cd03240 ABC_Rad50 The catalyti 99.7 4.1E-16 8.8E-21 111.4 8.6 75 4-85 2-80 (204)
356 TIGR00955 3a01204 The Eye Pigm 99.7 5.8E-18 1.2E-22 138.4 -1.3 126 16-158 37-186 (617)
357 TIGR01271 CFTR_protein cystic 99.7 3.2E-17 6.9E-22 144.4 2.5 131 5-158 1217-1373(1490)
358 COG1134 TagH ABC-type polysacc 99.6 1.2E-17 2.6E-22 119.6 -0.8 105 17-147 40-151 (249)
359 cd03279 ABC_sbcCD SbcCD and ot 99.6 1.3E-15 2.9E-20 109.5 9.2 80 1-85 1-85 (213)
360 COG4618 ArpD ABC-type protease 99.6 5.9E-17 1.3E-21 126.0 1.8 133 5-158 334-492 (580)
361 PLN03130 ABC transporter C fam 99.6 1.8E-16 3.9E-21 140.3 5.1 119 5-158 614-760 (1622)
362 KOG0979|consensus 99.6 5.9E-15 1.3E-19 121.6 12.7 136 3-157 22-160 (1072)
363 PLN03140 ABC transporter G fam 99.6 5.3E-17 1.2E-21 142.2 0.8 137 5-158 867-1039(1470)
364 cd03222 ABC_RNaseL_inhibitor T 99.6 7.6E-16 1.6E-20 107.5 6.2 52 9-60 4-60 (177)
365 TIGR00957 MRP_assoc_pro multi 99.6 3.1E-16 6.7E-21 138.5 4.6 119 5-158 636-780 (1522)
366 PLN03232 ABC transporter C fam 99.6 2.7E-16 5.9E-21 138.7 4.2 120 5-158 614-760 (1495)
367 TIGR00956 3a01205 Pleiotropic 99.6 9.1E-17 2E-21 140.7 -0.9 127 17-158 74-229 (1394)
368 cd03276 ABC_SMC6_euk Eukaryoti 99.6 1.8E-14 3.9E-19 102.5 10.6 124 3-158 1-133 (198)
369 cd03274 ABC_SMC4_euk Eukaryoti 99.6 1.1E-14 2.3E-19 104.7 9.4 51 1-51 1-51 (212)
370 PRK15177 Vi polysaccharide exp 99.6 5.8E-17 1.3E-21 116.5 -2.5 104 25-158 13-124 (213)
371 PLN03140 ABC transporter G fam 99.6 4E-16 8.7E-21 136.8 0.7 128 16-158 177-356 (1470)
372 TIGR01271 CFTR_protein cystic 99.6 1.5E-15 3.3E-20 134.0 3.6 106 18-158 440-568 (1490)
373 PRK00064 recF recombination pr 99.6 5.9E-14 1.3E-18 108.2 11.8 118 1-137 1-119 (361)
374 PRK01156 chromosome segregatio 99.5 1.8E-13 4E-18 116.3 14.3 138 1-158 1-149 (895)
375 COG0488 Uup ATPase components 99.5 7.5E-15 1.6E-19 117.4 5.3 124 5-158 321-459 (530)
376 KOG0250|consensus 99.5 1.2E-13 2.5E-18 115.1 11.8 148 3-157 42-196 (1074)
377 KOG0061|consensus 99.5 1.7E-15 3.8E-20 123.4 1.0 126 16-158 42-190 (613)
378 KOG0059|consensus 99.5 8.2E-16 1.8E-20 129.9 -2.9 140 4-158 563-718 (885)
379 COG0419 SbcC ATPase involved i 99.5 1.1E-13 2.4E-18 117.7 9.9 144 1-159 1-155 (908)
380 COG4778 PhnL ABC-type phosphon 99.5 9E-16 1.9E-20 104.8 -2.4 142 4-156 3-170 (235)
381 PTZ00243 ABC transporter; Prov 99.5 1E-14 2.3E-19 129.0 3.1 114 15-158 671-802 (1560)
382 cd03241 ABC_RecN RecN ATPase i 99.5 1.2E-12 2.6E-17 97.7 13.5 114 4-130 2-120 (276)
383 PRK02224 chromosome segregatio 99.5 5.4E-13 1.2E-17 113.3 13.0 139 1-158 1-149 (880)
384 cd03242 ABC_RecF RecF is a rec 99.5 5.8E-13 1.3E-17 99.0 11.4 100 4-122 2-101 (270)
385 COG1195 RecF Recombinational D 99.5 3.9E-13 8.4E-18 102.2 10.2 121 1-142 1-121 (363)
386 PRK14079 recF recombination pr 99.5 1.3E-12 2.8E-17 100.4 12.4 114 1-135 1-114 (349)
387 KOG0054|consensus 99.5 3.5E-14 7.7E-19 122.3 4.2 132 5-158 1138-1295(1381)
388 cd00267 ABC_ATPase ABC (ATP-bi 99.4 2.4E-14 5.2E-19 98.2 1.8 75 8-85 2-82 (157)
389 cd03277 ABC_SMC5_euk Eukaryoti 99.4 1.2E-12 2.5E-17 94.2 10.4 77 3-85 3-80 (213)
390 COG5265 ATM1 ABC-type transpor 99.4 2.3E-14 5E-19 109.6 1.7 132 6-158 263-419 (497)
391 TIGR00618 sbcc exonuclease Sbc 99.4 2.4E-13 5.3E-18 117.1 8.1 142 1-159 1-164 (1042)
392 COG4586 ABC-type uncharacteriz 99.4 9.7E-16 2.1E-20 111.4 -6.3 121 19-158 39-176 (325)
393 PRK03918 chromosome segregatio 99.4 4E-12 8.6E-17 108.1 13.0 139 1-158 1-145 (880)
394 cd03238 ABC_UvrA The excision 99.4 3.4E-13 7.4E-18 94.1 5.5 39 18-60 9-52 (176)
395 TIGR00634 recN DNA repair prot 99.4 6E-12 1.3E-16 102.2 13.3 118 2-132 1-127 (563)
396 PF13555 AAA_29: P-loop contai 99.4 1.1E-12 2.4E-17 75.4 5.9 49 3-53 1-51 (62)
397 KOG0054|consensus 99.4 4E-13 8.6E-18 116.0 5.7 119 5-158 518-663 (1381)
398 cd03239 ABC_SMC_head The struc 99.4 1.9E-12 4.2E-17 90.6 8.1 80 4-85 2-82 (178)
399 PRK10869 recombination and rep 99.4 1E-11 2.2E-16 100.5 12.7 119 2-133 1-124 (553)
400 TIGR00611 recf recF protein. A 99.4 8.9E-12 1.9E-16 96.2 11.9 76 1-84 1-76 (365)
401 COG4178 ABC-type uncharacteriz 99.4 3.7E-13 8E-18 108.0 4.2 124 5-158 392-535 (604)
402 PHA02562 46 endonuclease subun 99.4 1.5E-11 3.2E-16 99.9 13.3 141 1-158 2-150 (562)
403 PRK10246 exonuclease subunit S 99.4 9.9E-12 2.2E-16 107.1 12.2 143 1-159 1-168 (1047)
404 TIGR00606 rad50 rad50. This fa 99.3 9.3E-12 2E-16 109.4 6.8 140 3-158 3-169 (1311)
405 PLN03073 ABC transporter F fam 99.3 5.4E-12 1.2E-16 104.8 4.8 54 4-57 176-238 (718)
406 COG4615 PvdE ABC-type sideroph 99.2 7.5E-12 1.6E-16 95.6 4.2 57 4-60 321-384 (546)
407 cd00820 PEPCK_HprK Phosphoenol 99.2 6.7E-12 1.5E-16 80.2 2.9 65 25-110 15-79 (107)
408 KOG0065|consensus 99.2 1E-12 2.3E-17 112.0 -1.4 106 15-137 802-917 (1391)
409 KOG0060|consensus 99.2 3.7E-11 7.9E-16 95.4 6.4 132 5-158 433-590 (659)
410 COG4138 BtuD ABC-type cobalami 99.2 1.2E-12 2.7E-17 90.0 -2.8 101 25-145 25-128 (248)
411 PF13476 AAA_23: AAA domain; P 99.1 3.6E-11 7.7E-16 85.0 3.4 46 5-52 1-46 (202)
412 COG4170 SapD ABC-type antimicr 99.1 1.4E-11 3E-16 87.2 -0.9 142 6-158 4-178 (330)
413 KOG0064|consensus 99.1 1E-10 2.3E-15 92.2 3.4 127 6-158 482-632 (728)
414 cd03270 ABC_UvrA_I The excisio 99.1 1.8E-10 4E-15 83.5 4.4 27 16-42 7-38 (226)
415 COG1245 Predicted ATPase, RNas 99.0 1.2E-10 2.6E-15 90.5 2.4 48 6-55 343-397 (591)
416 KOG0927|consensus 99.0 1.1E-10 2.3E-15 92.2 1.6 125 6-158 390-529 (614)
417 KOG0066|consensus 99.0 1.5E-10 3.3E-15 89.8 1.9 124 5-158 586-724 (807)
418 PF11398 DUF2813: Protein of u 99.0 1.4E-09 3.1E-14 83.7 6.7 51 1-54 1-51 (373)
419 KOG0062|consensus 99.0 1.2E-10 2.7E-15 91.3 0.6 43 5-47 80-128 (582)
420 COG0497 RecN ATPase involved i 99.0 1E-08 2.2E-13 82.0 11.3 123 2-137 1-128 (557)
421 PRK04863 mukB cell division pr 98.9 1.1E-09 2.4E-14 96.4 5.0 56 3-60 7-62 (1486)
422 TIGR03185 DNA_S_dndD DNA sulfu 98.8 2.1E-08 4.5E-13 83.1 8.9 50 1-51 1-54 (650)
423 COG1129 MglA ABC-type sugar tr 98.8 5.4E-10 1.2E-14 88.4 -0.5 143 5-158 263-421 (500)
424 cd03227 ABC_Class2 ABC-type Cl 98.8 1.2E-08 2.5E-13 70.4 4.6 51 6-56 2-52 (162)
425 TIGR03238 dnd_assoc_3 dnd syst 98.7 3.1E-09 6.7E-14 83.7 1.6 40 19-60 21-66 (504)
426 cd03283 ABC_MutS-like MutS-lik 98.7 1.1E-08 2.4E-13 72.9 3.8 85 19-135 16-103 (199)
427 COG3950 Predicted ATP-binding 98.7 8.2E-09 1.8E-13 77.8 2.8 57 1-59 1-59 (440)
428 cd01130 VirB11-like_ATPase Typ 98.7 1.3E-08 2.8E-13 71.7 3.5 55 25-85 25-79 (186)
429 TIGR02858 spore_III_AA stage I 98.7 1.4E-09 3E-14 80.7 -1.6 35 26-60 112-146 (270)
430 COG1106 Predicted ATPases [Gen 98.7 1.7E-08 3.7E-13 77.5 3.8 47 2-50 1-47 (371)
431 KOG0065|consensus 98.7 2E-08 4.3E-13 86.5 4.3 123 18-157 129-279 (1391)
432 COG3845 ABC-type uncharacteriz 98.7 2.9E-09 6.2E-14 83.4 -0.8 147 5-158 257-423 (501)
433 PF13175 AAA_15: AAA ATPase do 98.6 3.7E-08 8E-13 77.0 4.4 46 3-50 1-47 (415)
434 PRK06002 fliI flagellum-specif 98.6 9.4E-08 2E-12 75.3 6.2 81 6-86 140-230 (450)
435 COG4637 Predicted ATPase [Gene 98.6 1.7E-08 3.6E-13 75.4 1.7 53 1-56 1-53 (373)
436 KOG2355|consensus 98.6 5.2E-08 1.1E-12 69.0 3.7 56 5-60 13-75 (291)
437 COG2401 ABC-type ATPase fused 98.5 7.6E-08 1.6E-12 74.5 3.6 34 17-50 396-434 (593)
438 PRK10078 ribose 1,5-bisphospho 98.5 7.3E-08 1.6E-12 67.9 3.2 27 25-51 2-28 (186)
439 KOG0927|consensus 98.5 1.1E-07 2.4E-12 75.5 4.4 52 5-56 75-132 (614)
440 PRK09825 idnK D-gluconate kina 98.5 1.3E-07 2.8E-12 66.1 3.8 29 24-52 2-30 (176)
441 PRK09270 nucleoside triphospha 98.5 1.3E-07 2.9E-12 68.7 3.3 31 25-55 33-63 (229)
442 cd03243 ABC_MutS_homologs The 98.4 1.8E-07 3.9E-12 66.7 3.4 24 25-48 29-52 (202)
443 TIGR00235 udk uridine kinase. 98.4 2E-07 4.4E-12 66.7 3.3 27 25-51 6-32 (207)
444 TIGR00554 panK_bact pantothena 98.4 1.9E-07 4E-12 70.1 2.4 32 25-56 62-95 (290)
445 TIGR02322 phosphon_PhnN phosph 98.3 4.8E-07 1E-11 63.2 3.8 28 25-52 1-28 (179)
446 PRK00300 gmk guanylate kinase; 98.3 5.4E-07 1.2E-11 64.2 3.9 26 25-50 5-30 (205)
447 COG3910 Predicted ATPase [Gene 98.3 3.9E-07 8.4E-12 63.7 2.9 27 25-51 37-63 (233)
448 COG3593 Predicted ATP-dependen 98.3 7.5E-07 1.6E-11 72.0 5.0 50 1-52 1-50 (581)
449 cd03280 ABC_MutS2 MutS2 homolo 98.3 4.1E-07 8.8E-12 64.8 2.6 21 26-46 29-49 (200)
450 cd02025 PanK Pantothenate kina 98.3 5.4E-07 1.2E-11 65.2 3.2 25 27-51 1-25 (220)
451 PF13304 AAA_21: AAA domain; P 98.3 1.4E-07 2.9E-12 68.4 0.0 24 27-50 1-24 (303)
452 cd02026 PRK Phosphoribulokinas 98.3 6.3E-07 1.4E-11 66.8 3.4 29 27-55 1-29 (273)
453 TIGR02680 conserved hypothetic 98.3 1.5E-06 3.4E-11 77.1 5.9 49 2-52 3-52 (1353)
454 cd03282 ABC_MSH4_euk MutS4 hom 98.3 1.1E-06 2.3E-11 62.9 4.0 25 25-49 29-53 (204)
455 TIGR03263 guanyl_kin guanylate 98.2 8.6E-07 1.9E-11 61.9 3.0 26 25-50 1-26 (180)
456 cd02023 UMPK Uridine monophosp 98.2 1.3E-06 2.8E-11 62.0 3.3 23 27-49 1-23 (198)
457 PLN02796 D-glycerate 3-kinase 98.2 1.2E-06 2.6E-11 66.9 3.3 34 27-60 102-138 (347)
458 PRK09862 putative ATP-dependen 98.2 1.1E-06 2.4E-11 70.5 2.6 51 9-59 188-244 (506)
459 PF03193 DUF258: Protein of un 98.1 1.7E-06 3.7E-11 59.4 2.8 33 25-57 35-67 (161)
460 PRK10416 signal recognition pa 98.1 2.1E-06 4.5E-11 65.4 3.3 36 25-60 114-149 (318)
461 PRK08149 ATP synthase SpaL; Va 98.1 4.4E-06 9.6E-11 65.7 5.1 60 25-86 151-216 (428)
462 cd03284 ABC_MutS1 MutS1 homolo 98.1 2.3E-06 5E-11 61.7 3.2 25 25-49 30-54 (216)
463 TIGR02788 VirB11 P-type DNA tr 98.1 2.2E-06 4.7E-11 65.1 3.0 35 25-59 144-178 (308)
464 cd01854 YjeQ_engC YjeQ/EngC. 98.1 2.3E-06 5E-11 64.3 3.1 34 25-58 161-194 (287)
465 cd03281 ABC_MSH5_euk MutS5 hom 98.1 2.6E-06 5.6E-11 61.3 3.1 22 26-47 30-51 (213)
466 cd03287 ABC_MSH3_euk MutS3 hom 98.1 3.5E-06 7.6E-11 61.0 3.4 33 25-57 31-64 (222)
467 PRK05480 uridine/cytidine kina 98.1 3.5E-06 7.7E-11 60.3 3.4 26 25-50 6-31 (209)
468 cd04104 p47_IIGP_like p47 (47- 98.1 3.2E-06 6.9E-11 60.0 3.0 30 28-57 4-33 (197)
469 TIGR01360 aden_kin_iso1 adenyl 98.1 2.1E-06 4.5E-11 60.2 2.0 31 26-56 4-37 (188)
470 PRK00098 GTPase RsgA; Reviewed 98.1 2.8E-06 6.1E-11 64.2 2.8 35 24-58 163-197 (298)
471 PRK01889 GTPase RsgA; Reviewed 98.0 3.7E-06 8E-11 65.0 3.4 36 25-60 195-230 (356)
472 PLN03046 D-glycerate 3-kinase; 98.0 3.8E-06 8.2E-11 65.7 3.2 36 25-60 212-250 (460)
473 cd01131 PilT Pilus retraction 98.0 5E-06 1.1E-10 59.2 3.5 32 26-57 2-34 (198)
474 PRK07196 fliI flagellum-specif 98.0 7.2E-06 1.6E-10 64.7 4.5 61 25-85 155-221 (434)
475 PRK06995 flhF flagellar biosyn 98.0 3.6E-06 7.9E-11 67.2 2.8 29 25-53 256-284 (484)
476 cd04155 Arl3 Arl3 subfamily. 98.0 4E-06 8.7E-11 57.8 2.7 22 27-48 16-37 (173)
477 PRK14721 flhF flagellar biosyn 98.0 4.8E-06 1E-10 65.4 3.4 24 25-48 191-214 (420)
478 cd00071 GMPK Guanosine monopho 98.0 5E-06 1.1E-10 55.7 3.1 26 27-52 1-26 (137)
479 PRK10751 molybdopterin-guanine 98.0 5E-06 1.1E-10 57.8 3.0 26 26-51 7-32 (173)
480 PRK07960 fliI flagellum-specif 98.0 5.6E-06 1.2E-10 65.4 3.6 61 25-87 175-240 (455)
481 PRK07721 fliI flagellum-specif 98.0 8.9E-06 1.9E-10 64.4 4.5 60 25-84 158-222 (438)
482 TIGR02524 dot_icm_DotB Dot/Icm 98.0 6.5E-06 1.4E-10 63.7 3.7 26 25-50 134-159 (358)
483 PRK03846 adenylylsulfate kinas 98.0 5.7E-06 1.2E-10 58.8 3.1 36 25-60 24-60 (198)
484 PLN02318 phosphoribulokinase/u 98.0 5.3E-06 1.2E-10 67.4 3.0 33 27-60 67-99 (656)
485 TIGR00101 ureG urease accessor 98.0 8.5E-06 1.8E-10 58.1 3.8 26 27-52 3-28 (199)
486 PF04310 MukB: MukB N-terminal 98.0 4.6E-06 1E-10 58.7 2.2 53 4-58 8-60 (227)
487 smart00382 AAA ATPases associa 98.0 8.9E-06 1.9E-10 53.3 3.5 28 25-52 2-29 (148)
488 PF13207 AAA_17: AAA domain; P 97.9 8.4E-06 1.8E-10 53.1 3.2 24 27-50 1-24 (121)
489 cd04159 Arl10_like Arl10-like 97.9 5.8E-06 1.3E-10 55.6 2.4 21 28-48 2-22 (159)
490 cd01876 YihA_EngB The YihA (En 97.9 6E-06 1.3E-10 56.1 2.2 27 28-54 2-30 (170)
491 smart00534 MUTSac ATPase domai 97.9 8.3E-06 1.8E-10 57.4 2.9 21 27-47 1-21 (185)
492 PRK07429 phosphoribulokinase; 97.9 1E-05 2.2E-10 61.8 3.5 27 27-53 10-36 (327)
493 PRK08533 flagellar accessory p 97.9 2.1E-05 4.6E-10 57.3 5.0 43 6-52 8-52 (230)
494 KOG0062|consensus 97.9 1.9E-06 4.2E-11 68.2 -0.6 125 5-158 362-502 (582)
495 TIGR00017 cmk cytidylate kinas 97.9 1.4E-05 3E-10 57.7 3.7 31 27-57 4-37 (217)
496 COG0194 Gmk Guanylate kinase [ 97.9 1.1E-05 2.3E-10 56.4 2.9 23 25-47 4-26 (191)
497 PRK10463 hydrogenase nickel in 97.9 1.3E-05 2.9E-10 60.0 3.4 28 25-52 104-131 (290)
498 cd03271 ABC_UvrA_II The excisi 97.9 1.1E-05 2.5E-10 59.7 3.0 21 25-45 21-41 (261)
499 smart00053 DYNc Dynamin, GTPas 97.9 1.3E-05 2.8E-10 58.7 3.2 27 23-49 24-50 (240)
500 TIGR00150 HI0065_YjeE ATPase, 97.9 2.2E-05 4.7E-10 52.3 3.9 27 25-51 22-48 (133)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-36 Score=210.47 Aligned_cols=142 Identities=16% Similarity=0.253 Sum_probs=116.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ |+|++..+|++++ |++++|+|||||||||||++|+++..+++|+|.++| .++.... .....|+++
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g-~~~~~~~-~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG-EDVGDKK-DILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC-Eeccchh-hHHHHHHhc
Confidence 3899999 9999999999998 799999999999999999999999999999999998 2221101 112257889
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++|||+ |++||++||.+|+..+... .+...+.+.++++.++|+.+||.+ .+|.+||+ |+ +|||
T Consensus 80 GmVFQ~---------fnLFPHlTvleNv~lap~~-v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIAR 149 (240)
T COG1126 80 GMVFQQ---------FNLFPHLTVLENVTLAPVK-VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIAR 149 (240)
T ss_pred Ceeccc---------ccccccchHHHHHHhhhHH-HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHH
Confidence 999998 6899999999999987531 222234455678889999999986 68999999 43 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+++|+
T Consensus 150 ALaM~P~ 156 (240)
T COG1126 150 ALAMDPK 156 (240)
T ss_pred HHcCCCC
Confidence 9999997
No 2
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=216.91 Aligned_cols=139 Identities=21% Similarity=0.268 Sum_probs=117.2
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
..|+++|+ |.|++..++++++ ||+++|+|||||||||||++|+|+..|++|+|+++| +++... ....+.
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g-~~vt~l----~P~~R~ 76 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG-RDVTDL----PPEKRG 76 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCCC----ChhHCC
Confidence 35999999 9999865678887 799999999999999999999999999999999998 443221 224678
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
|++|||+ |.+||+|||++|+.|+.+ .+...+.+..+++.+..+.++|.+ ++|.+||+ |+ ++|
T Consensus 77 iamVFQ~---------yALyPhmtV~~Niaf~Lk--~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAla 145 (338)
T COG3839 77 IAMVFQN---------YALYPHMTVYENIAFGLK--LRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALA 145 (338)
T ss_pred EEEEeCC---------ccccCCCcHHHHhhhhhh--hCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHH
Confidence 9999999 689999999999999976 332234556789999999999987 68999999 44 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
||++.+|+
T Consensus 146 RAlVr~P~ 153 (338)
T COG3839 146 RALVRKPK 153 (338)
T ss_pred HHHhcCCC
Confidence 99999996
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=217.69 Aligned_cols=142 Identities=18% Similarity=0.251 Sum_probs=119.2
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|+...|+++|+ |.|++..+++++| ||+++|+|||||||||+|++|+|+..|++|+|.++| +++... ...
T Consensus 1 ~~~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G-~~i~~l----pp~ 75 (352)
T COG3842 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG-EDITDV----PPE 75 (352)
T ss_pred CCCceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCCC----Chh
Confidence 34457999999 9999999999998 799999999999999999999999999999999998 554321 225
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-- 147 (159)
++.|++|||+ |++|||+||.+||.|+.+ .+. ..+.+..+++.++++.++|.. ++|.++|+ |+
T Consensus 76 kR~ig~VFQ~---------YALFPHltV~~NVafGLk--~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQR 144 (352)
T COG3842 76 KRPIGMVFQS---------YALFPHMTVEENVAFGLK--VRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQR 144 (352)
T ss_pred hcccceeecC---------cccCCCCcHHHHhhhhhh--hcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHH
Confidence 7889999999 799999999999999976 221 112234578999999999976 78999999 43
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
++||+|+.+|+
T Consensus 145 VALARAL~~~P~ 156 (352)
T COG3842 145 VALARALVPEPK 156 (352)
T ss_pred HHHHHHhhcCcc
Confidence 99999999995
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.4e-32 Score=192.76 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=114.1
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.++++++ +.|+...+|++++ ||+++|+|||||||||||++|+|+..|++|+|.++| +.+ ......+
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g-~~v-------~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG-RPV-------TGPGPDI 74 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-ccc-------CCCCCCE
Confidence 4899999 9999999999998 799999999999999999999999999999999988 332 1145679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~ 151 (159)
+||||++ .++|.+||.+|+.++.. .....+....+++.++|+.+||.. .+|.++|+ |+ +|||
T Consensus 75 ~~vFQ~~---------~LlPW~Tv~~NV~l~l~--~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQED---------ALLPWLTVLDNVALGLE--LRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccC---------cccchhhHHhhheehhh--ccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHH
Confidence 9999994 78999999999999865 221233334568999999999976 68999999 44 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 144 AL~~~P~ 150 (248)
T COG1116 144 ALATRPK 150 (248)
T ss_pred HHhcCCC
Confidence 9999996
No 5
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.4e-32 Score=197.57 Aligned_cols=139 Identities=22% Similarity=0.309 Sum_probs=115.1
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH---HHHHhhCCCceeEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ---ELIYKNGQAGVTKA 76 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~ 76 (159)
|+++|. +.|+...++.+++ +++++|+|||||||||||++|+|++.|++|.|.+++ + |..+ .....+
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~-~~l~D~~~----~~~~~R 77 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNG-RVLFDVSN----LAVRDR 77 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECC-Eeccchhc----cchhhc
Confidence 689999 9999988888776 799999999999999999999999999999999988 3 3221 122467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
+||+|||+ |.+|++|||.+||.|+.+..-...++.....++.++|+.+.|.. .+|.+||+ |+ ++
T Consensus 78 ~VGfvFQ~---------YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVAL 148 (345)
T COG1118 78 KVGFVFQH---------YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVAL 148 (345)
T ss_pred ceeEEEec---------hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHH
Confidence 89999999 68999999999999997633111233345678899999888865 79999999 55 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
||||+.+|+
T Consensus 149 ARALA~eP~ 157 (345)
T COG1118 149 ARALAVEPK 157 (345)
T ss_pred HHHhhcCCC
Confidence 999999996
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=5.7e-32 Score=193.47 Aligned_cols=139 Identities=18% Similarity=0.273 Sum_probs=116.5
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ |.|+++.++++++ +++.+++|||||||||+|++|++++.|++|+|+++| +++...+. -..|++||
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g-~~i~~~d~--~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDG-EDISDLDP--VELRRKIG 78 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECC-eecccCCH--HHHHHhhh
Confidence 799999 9999999999998 799999999999999999999999999999999998 44432121 22578999
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-----CCCeeEEe-Ch---hHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-----NNPHFLIM-QG---RVT 150 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~l~~-q~---~ia 150 (159)
||.|. ..+||++||.+||..-.. ....++....+++.++++.++|+. ++|.+||+ |+ -|+
T Consensus 79 YviQq---------igLFPh~Tv~eNIa~VP~--L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQ---------IGLFPHLTVAENIATVPK--LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhh---------cccCCCccHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHH
Confidence 99998 469999999999987432 333345556789999999999975 68999999 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
|||+++|+
T Consensus 148 RALAadP~ 155 (309)
T COG1125 148 RALAADPP 155 (309)
T ss_pred HHHhcCCC
Confidence 99999996
No 7
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=8.4e-31 Score=180.14 Aligned_cols=141 Identities=18% Similarity=0.257 Sum_probs=117.3
Q ss_pred EEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh-hCCCceeEEE
Q psy17514 6 MVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK-NGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~~~ 77 (159)
|+++|+ |.|... ++|.++| +|+..|+|||||||||||+.|++...|+.|.|++++ .++.+. ..+....|++
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~-~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG-HDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECC-eecccccccccchhhhe
Confidence 789999 999754 4899888 799999999999999999999999999999999998 555432 2334456899
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe--Ch--hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM--QG--RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~--q~--~ia 150 (159)
|++|||+ |.+.++.||+||+.++.. ..-.......+++.+.|+.+||.. .-|.+||+ |+ +||
T Consensus 81 IGvVFQD---------~rLL~~~tvyeNVA~pL~--v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQD---------FRLLPDRTVYENVALPLR--VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeee---------ccccccchHhhhhhhhhh--ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence 9999999 678999999999999864 322234455789999999999987 46899999 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
||++.+|+
T Consensus 150 RAiV~~P~ 157 (223)
T COG2884 150 RAIVNQPA 157 (223)
T ss_pred HHHccCCC
Confidence 99999996
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.8e-31 Score=192.17 Aligned_cols=141 Identities=20% Similarity=0.301 Sum_probs=116.4
Q ss_pred EEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC-CCce
Q psy17514 6 MVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG-QAGV 73 (159)
Q Consensus 6 l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~-~~~~ 73 (159)
|+++++ |.|.. ..+++++| |++++|||+||||||||+++|+++..|++|++.++| +++...+. .-..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G-~di~~l~~~~Lr~ 80 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDG-QDLTALSEAELRQ 80 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcC-EecccCChHHHHH
Confidence 789999 99976 46888888 799999999999999999999999999999999998 44432111 1122
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-- 147 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-- 147 (159)
.|++|+|+||+ |+++...||++|+.++.. .....+...++++.++|+.+||.+ .+|.+||+ |+
T Consensus 81 ~R~~IGMIFQh---------FnLLssrTV~~NvA~PLe--iag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQH---------FNLLSSRTVFENVAFPLE--LAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQR 149 (339)
T ss_pred HHhhccEEecc---------ccccccchHHhhhhhhHh--hcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhH
Confidence 57889999999 578888999999999865 222334556789999999999987 68999999 55
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
+|||||+.+|+
T Consensus 150 VaIARALa~~P~ 161 (339)
T COG1135 150 VAIARALANNPK 161 (339)
T ss_pred HHHHHHHhcCCC
Confidence 99999999997
No 9
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.9e-26 Score=168.57 Aligned_cols=137 Identities=63% Similarity=1.003 Sum_probs=109.1
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|.+..|+++||++|.+.+++.+++.++++|+||||||||||+++|++++.+. .|+++..+..++++.........+.|+
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 8899999999999998886657889999999999999999999999999886 568888886577654333234577999
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV 137 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 137 (159)
++||+++....|.+..+.+.++|.+++..+....+.++++....+++.++|+.++|..
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~ 138 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNV 138 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCC
Confidence 9999975433333335678899999998876545556666666789999999999963
No 10
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=4.7e-30 Score=183.16 Aligned_cols=141 Identities=21% Similarity=0.304 Sum_probs=108.7
Q ss_pred EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCce
Q psy17514 6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAGV 73 (159)
Q Consensus 6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~~ 73 (159)
++++|+ |.|... .+|++++ ||+++|+|||||||||||++|.++..|++|.+++.| .++.... .....
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g-~d~~~l~~~~~~~~ 80 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING-KDLTKLSEKELAKL 80 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC-EEcCcCCHHHHHHH
Confidence 578999 888643 6788887 799999999999999999999999999999998887 3332111 11223
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-C--
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-Q-- 146 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q-- 146 (159)
++..|+|+||+ |++.|++|+.||+.++.. +.........+++.++++.+||.+ .+|.+||+ |
T Consensus 81 R~~~iGfvFQ~---------~nLl~~ltv~ENv~lpl~--~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQ 149 (226)
T COG1136 81 RRKKIGFVFQN---------FNLLPDLTVLENVELPLL--IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ 149 (226)
T ss_pred HHHhEEEECcc---------CCCCCCCCHHHHHHhHHH--HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHH
Confidence 56789999998 689999999999997643 211111134567888999999974 45889999 3
Q ss_pred h-hHhHhhcCCCC
Q psy17514 147 G-RVTKVLNMKPH 158 (159)
Q Consensus 147 ~-~ia~~l~~~p~ 158 (159)
+ +|||||+.+|+
T Consensus 150 RVAIARAL~~~P~ 162 (226)
T COG1136 150 RVAIARALINNPK 162 (226)
T ss_pred HHHHHHHHhcCCC
Confidence 3 99999999996
No 11
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=5.9e-29 Score=176.68 Aligned_cols=143 Identities=19% Similarity=0.235 Sum_probs=114.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~ 77 (159)
.|+++++ ++|+++.++++++ |++++|+||||+||||||++|.|++.|++|+|++.| +++...... ....+++
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G-~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG-EDIPQLSEEELYEIRKR 86 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcC-cchhccCHHHHHHHHhh
Confidence 6899999 9999999999998 799999999999999999999999999999999998 454321111 1134678
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe--Ch--hH
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM--QG--RV 149 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~--q~--~i 149 (159)
++++||.. ++|..+||+||+.++.+.+.. -.++..++.+..-|+.+||.. ..|..||+ ++ ++
T Consensus 87 ~GvlFQ~g---------ALFssltV~eNVafplre~~~-lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 87 MGVLFQQG---------ALFSSLTVFENVAFPLREHTK-LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred eeEEeecc---------ccccccchhHhhheehHhhcc-CCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 99999985 799999999999998652222 122233445556688899975 57999998 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|||++.+|+
T Consensus 157 ARAialdPe 165 (263)
T COG1127 157 ARAIALDPE 165 (263)
T ss_pred HHHHhcCCC
Confidence 999999996
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=3.9e-28 Score=176.43 Aligned_cols=142 Identities=14% Similarity=0.198 Sum_probs=111.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ ..|+++.+++++| +++++|+|||||||||||++|+|+++|.+|+|.++| +++..... ....+.+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g-~~i~~~~~--kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG-KDIASLSP--KELAKKL 78 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC-CchhhcCH--HHHhhhE
Confidence 4799999 9999999999998 799999999999999999999999999999999999 56543222 2246789
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
+|++|.+ .....+||.|-+.++...+....+ .+.+.+.+.+.++.+++.. +.-..+|+ |+ .|
T Consensus 79 a~vpQ~~---------~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSP---------SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLI 149 (258)
T ss_pred EEeccCC---------CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHH
Confidence 9999985 234468999999988653222222 2333456888899999976 44567777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
||||+.+|+
T Consensus 150 ArALaQ~~~ 158 (258)
T COG1120 150 ARALAQETP 158 (258)
T ss_pred HHHHhcCCC
Confidence 999999986
No 13
>KOG0933|consensus
Probab=99.95 E-value=4.1e-27 Score=191.48 Aligned_cols=159 Identities=66% Similarity=1.063 Sum_probs=151.3
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|++..|-+++||+|..++++.++++.+++|+|-||||||++|++||++++.+ -..+|..+++++++...+++..++.|.
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 8889999999999999999999999999999999999999999999999987 357999999999998888888999999
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCCCC
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p~~ 159 (159)
++|.+.+...-|+||...|+.+|.+.|..++++.|.+||+.+....+.+++..++|...+|++|..||.|..+|.|+|.|
T Consensus 81 VvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~E 160 (1174)
T KOG0933|consen 81 VVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSE 160 (1174)
T ss_pred EEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcCCcHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999976
No 14
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.1e-29 Score=174.30 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=109.7
Q ss_pred EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCC
Q psy17514 3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQA 71 (159)
Q Consensus 3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~ 71 (159)
...++++|+ ..|+++.+|++++ ..+++|||||||||||||++++.+.... .|+|.++| +++....-..
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g-~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG-KNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC-eeccCCCCCH
Confidence 346899999 9999999999998 4789999999999999999999998665 48888888 5543321112
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEE
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLI 144 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~ 144 (159)
-..|++|++|||.| +.|| +|+++|+.++.+..-. .+ ....+.+...|+...|++ +++..||
T Consensus 84 ~~lRr~vGMVFQkP---------nPFp-~SIydNVayG~r~~g~-~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LS 151 (253)
T COG1117 84 VELRRRVGMVFQKP---------NPFP-MSIYDNVAYGLRLHGI-KD-KELDEIVESSLKKAALWDEVKDRLHKSALGLS 151 (253)
T ss_pred HHHHHHheeeccCC---------CCCC-chHHHHHHHhHHhhcc-ch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCC
Confidence 23578999999997 4667 8999999998552111 11 233466777888888875 4677888
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ +|||+|+.+|+
T Consensus 152 GGQQQRLcIARalAv~Pe 169 (253)
T COG1117 152 GGQQQRLCIARALAVKPE 169 (253)
T ss_pred hhHHHHHHHHHHHhcCCc
Confidence 8 33 99999999996
No 15
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.5e-28 Score=173.16 Aligned_cols=141 Identities=21% Similarity=0.277 Sum_probs=114.3
Q ss_pred EEEEeCe-eeecCCe----eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 5 SMVLDGF-KSYGTRV----EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~----~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
.|+++|+ +.|+... +++++| ||+++|+|+||||||||.++|+|+..|+.|+|.++| +.+.... .....
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G-~~~~~~~-~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG-KPLAPKK-RAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC-cccCccc-cchhh
Confidence 4899999 9999887 899998 799999999999999999999999999999999998 3332211 11235
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-C--h
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-Q--G 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q--~ 147 (159)
.+.|.+|||+|... +.|..||.+.+.-+.. .++....++++.++++.+||.. +.|.+||+ | +
T Consensus 81 ~~~VQmVFQDp~~S-------LnP~~tv~~~l~Epl~----~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR 149 (252)
T COG1124 81 YRPVQMVFQDPYSS-------LNPRRTVGRILSEPLR----PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR 149 (252)
T ss_pred ccceeEEecCCccc-------cCcchhHHHHHhhhhc----cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence 67899999998654 5666788887766532 3455555677999999999986 78999999 4 3
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
+|||||+.+|+
T Consensus 150 iaIARAL~~~Pk 161 (252)
T COG1124 150 IAIARALIPEPK 161 (252)
T ss_pred HHHHHHhccCCC
Confidence 99999999996
No 16
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.7e-28 Score=173.57 Aligned_cols=140 Identities=11% Similarity=0.183 Sum_probs=107.8
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ ..|+..++|.++| +++++|+|+|||||||||++|+|+.++.+|+|.+.| +|+.. .+.+...++.|
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G-~dit~-~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG-EDITG-LPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECC-eecCC-CCHHHHHhCCe
Confidence 4899999 9999999999998 799999999999999999999999999999999999 66544 23334467889
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-cc---CCCeeEEe--Ch--hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-NV---NNPHFLIM--QG--RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~---~~~~~l~~--q~--~ia 150 (159)
++|+|.. .+|+.+||+||+..+.. ....+......++++++.|-- .. ....++|+ |+ +||
T Consensus 81 ~~VPegR---------~iF~~LTVeENL~~g~~---~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 81 AYVPEGR---------RIFPRLTVEENLLLGAY---ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred EeCcccc---------cchhhCcHHHHHhhhhh---cccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 9999874 69999999999998743 222212222225555655542 22 34567777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
|||+.+|+
T Consensus 149 RALm~~Pk 156 (237)
T COG0410 149 RALMSRPK 156 (237)
T ss_pred HHHhcCCC
Confidence 99999996
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-28 Score=174.19 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=112.5
Q ss_pred EEEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh-CCCceeEE
Q psy17514 5 SMVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN-GQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~~ 76 (159)
.|+++|+ +.| ++.++|.+++ ||+++|+|||||||||||++|+|+.+|++|++.+.+ .++.... .+....++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g-~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG-VQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecc-cchhccchHHHHHHHH
Confidence 4899999 999 7889999998 799999999999999999999999999999999988 3433211 11223578
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE-------EECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY-------MINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM- 145 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~- 145 (159)
.++|+||. +++.+.++|.+|+..+...+. .+.. +....++.+.|+.+||.+ ....+||+
T Consensus 82 ~iGmIfQ~---------~nLv~r~sv~~NVl~grl~~~s~~~slfglfs-k~dk~~Al~aLervgi~~~A~qra~~LSGG 151 (258)
T COG3638 82 DIGMIFQQ---------FNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS-KEDKAQALDALERVGILDKAYQRASTLSGG 151 (258)
T ss_pred hceeEecc---------CCcccccHHHHHHHhhhcccchHHHHHhCCCC-HHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence 99999998 478999999999987643211 1111 234567788999999976 45678888
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +|||+|+.+|+
T Consensus 152 QQQRVaIARaL~Q~pk 167 (258)
T COG3638 152 QQQRVAIARALVQQPK 167 (258)
T ss_pred hhHHHHHHHHHhcCCC
Confidence 33 99999999996
No 18
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=6.3e-29 Score=177.01 Aligned_cols=143 Identities=17% Similarity=0.274 Sum_probs=112.8
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++++ |+|++..+++++| +++++|||||||||||++++|+|+++|++|+|++.| +++.. .+.....+..|
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G-~~it~-l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG-RDITG-LPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECC-cccCC-CCHHHHHhccc
Confidence 4889999 9999999999998 689999999999999999999999999999999998 55533 22233457889
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE------EE----ECCEEeCHHHHHHHHHhcCccc--CCC-eeEEe
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR------YM----INGSSVNPKRVSDLFSSVNLNV--NNP-HFLIM 145 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~------~~----~~~~~~~~~~~~~~l~~~~l~~--~~~-~~l~~ 145 (159)
+..||++ .+|+++||.||+..+.... +. ....++..+++.++|+.++|.. +.+ ..|+.
T Consensus 82 ~RTFQ~~---------rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Lsy 152 (250)
T COG0411 82 ARTFQIT---------RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSY 152 (250)
T ss_pred eeecccc---------cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCCh
Confidence 9999996 6899999999998763211 00 0122344567889999999987 334 44555
Q ss_pred --Ch--hHhHhhcCCCC
Q psy17514 146 --QG--RVTKVLNMKPH 158 (159)
Q Consensus 146 --q~--~ia~~l~~~p~ 158 (159)
|+ .|||+|+.+|+
T Consensus 153 G~qR~LEIArALa~~P~ 169 (250)
T COG0411 153 GQQRRLEIARALATQPK 169 (250)
T ss_pred hHhHHHHHHHHHhcCCC
Confidence 44 99999999996
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6e-28 Score=185.02 Aligned_cols=138 Identities=18% Similarity=0.220 Sum_probs=109.2
Q ss_pred EEEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.| ++..+|++++ +++++|+|||||||||||++|+|+..|++|+|+++| +++.. ....++.
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g-~~i~~----~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGG-RVVNE----LEPADRD 77 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECC-EECCC----CCHHHCC
Confidence 4899999 999 7778888887 789999999999999999999999999999999988 33211 1112467
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
|+|+||++ .+|+++||.+|+.++.. .....+....+++.++++.++|.. ..|.+||+ |+ +||
T Consensus 78 ig~v~Q~~---------~lfp~~tv~eNi~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 78 IAMVFQNY---------ALYPHMSVRENMAYGLK--IRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMG 146 (356)
T ss_pred EEEEeCCc---------cccCCCCHHHHHHhHHh--hcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence 99999985 68999999999988743 110112223467889999999975 57888888 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
|+|+.+|+
T Consensus 147 RAL~~~P~ 154 (356)
T PRK11650 147 RAIVREPA 154 (356)
T ss_pred HHHhcCCC
Confidence 99999996
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.8e-28 Score=184.30 Aligned_cols=140 Identities=14% Similarity=0.221 Sum_probs=111.4
Q ss_pred EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
+..|+++|+ +.|++..++++++ +++++|+|||||||||||++|+|++.|++|+|+++| +++.. ....++
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g-~~i~~----~~~~~r 78 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG-EDVTH----RSIQQR 78 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECC-EECCC----CCHHHC
Confidence 346999999 9999888888887 789999999999999999999999999999999988 33211 112346
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.|+++||++ .+|+++||.+|+.++.. .+...+....+++.++++.++|.. ..|..+|+ |+ ++
T Consensus 79 ~ig~vfQ~~---------~lfp~~tv~eNi~~~l~--~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaL 147 (351)
T PRK11432 79 DICMVFQSY---------ALFPHMSLGENVGYGLK--MLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVAL 147 (351)
T ss_pred CEEEEeCCc---------ccCCCCCHHHHHHHHHh--HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 899999984 68999999999998743 111122233567889999999975 57888888 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
||+|+.+|+
T Consensus 148 ARaL~~~P~ 156 (351)
T PRK11432 148 ARALILKPK 156 (351)
T ss_pred HHHHHcCCC
Confidence 999999996
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=7.1e-28 Score=184.42 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=110.5
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
..|+++|+ +.|++..+|++++ +++++|+|||||||||||++|+|+..|++|+|+++| +++.. ....++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g-~~~~~----~~~~~r~ 77 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG-RDITR----LPPQKRD 77 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECC-EECCC----CCHHHCC
Confidence 35899999 9999888888887 789999999999999999999999999999999988 33311 1113467
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
++|+||++ .+|+++||.+|+.++.. .+...+....+++.++++.++|.. ..|.++|+ |+ ++|
T Consensus 78 ig~v~Q~~---------~lfp~~tv~eNi~~~~~--~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 78 YGIVFQSY---------ALFPNLTVADNIAYGLK--NRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALA 146 (353)
T ss_pred EEEEeCCc---------ccCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHH
Confidence 99999984 68999999999988643 110112233567899999999976 57888888 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
|+|+.+|+
T Consensus 147 RaL~~~P~ 154 (353)
T TIGR03265 147 RALATSPG 154 (353)
T ss_pred HHHhcCCC
Confidence 99999996
No 22
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.7e-26 Score=167.18 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=104.9
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
..|+++|+ ..|++.++|.+++ |++++|+||||||||||+++|.|+++|..|+|.+.+ ++.. ....+.+
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g-~~~~-----~~~~~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFG-KPVR-----KRRKRLR 76 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcc-cccc-----ccccCCe
Confidence 35899999 9999657999998 689999999999999999999999999999999887 2211 1112468
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCce---EEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNT---RYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G- 147 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~- 147 (159)
|+||+|... +...-.+||+|-+.++... .++..+ +.+.+.+.++|+.+++.. +....||+ | +
T Consensus 77 IgYVPQ~~~-------~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV 148 (254)
T COG1121 77 IGYVPQKSS-------VDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV 148 (254)
T ss_pred EEEcCcccc-------cCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH
Confidence 999999641 1111125888888776321 122122 223578999999999986 44567777 3 3
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
-|||||+.+|+
T Consensus 149 ~lARAL~~~p~ 159 (254)
T COG1121 149 LLARALAQNPD 159 (254)
T ss_pred HHHHHhccCCC
Confidence 99999999996
No 23
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=2.5e-26 Score=156.08 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=114.4
Q ss_pred EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCc
Q psy17514 5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAG 72 (159)
Q Consensus 5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~ 72 (159)
.|+++++ +..++ ..+|.+++ +|.++|+||+||||||||-.++|+..|++|++++.| +++...+ ....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G-~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLG-QPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcC-cchhhcCHHHHHH
Confidence 6888998 77754 45777777 799999999999999999999999999999999988 5554322 2223
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe--Ch
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM--QG 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~--q~ 147 (159)
.+.+.|++|||. |.+.|++|..||+..+.. ..-.+.........++|+.+||.. ++|.++|+ |+
T Consensus 85 ~R~~~vGfVFQS---------F~Lip~ltAlENV~lPle--L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQ 153 (228)
T COG4181 85 LRARHVGFVFQS---------FHLIPNLTALENVALPLE--LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQ 153 (228)
T ss_pred hhccceeEEEEe---------eeccccchhhhhccchhh--hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHH
Confidence 456789999998 678999999999999853 222224445567899999999987 68999999 44
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
+|||+++..|+
T Consensus 154 RVAiARAfa~~P~ 166 (228)
T COG4181 154 RVALARAFAGRPD 166 (228)
T ss_pred HHHHHHHhcCCCC
Confidence 99999999996
No 24
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.92 E-value=3.1e-27 Score=181.92 Aligned_cols=138 Identities=20% Similarity=0.262 Sum_probs=109.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++++++ +++++|+|||||||||||++|+|+++|++|+|.++| +++.. ....++.+
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g-~~i~~----~~~~~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDG-QDITH----VPAENRHV 88 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECCC----CCHHHCCE
Confidence 5899999 9999888888887 789999999999999999999999999999999988 33211 11134679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|+||++ .+|+++||.+|+.++.. ..........+++.++++.++|.. ..|.+||+ |+ ++||
T Consensus 89 g~vfQ~~---------~lfp~ltv~eNi~~~l~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSY---------ALFPHMTVFENVAFGLR--MQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCc---------ccCCCCCHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 9999984 68999999999988643 110111222457888999999975 57888888 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 158 aL~~~P~ 164 (375)
T PRK09452 158 AVVNKPK 164 (375)
T ss_pred HHhcCCC
Confidence 9999996
No 25
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.92 E-value=4.4e-27 Score=180.45 Aligned_cols=138 Identities=19% Similarity=0.267 Sum_probs=109.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcc--cchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQV--KQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|++..++++++ +++++|+|||||||||||++|+|++.|++ |+|+++| .++.. ....++
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g-~~~~~----~~~~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIAD-RDLTH----APPHKR 79 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECC-EECCC----CCHHHC
Confidence 5899999 9999888888887 78999999999999999999999999999 9999988 33211 111246
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.|+++||++ .+|+++||.+|+.++.. ..........+++.++++.++|.. ..|.+||+ |+ ++
T Consensus 80 ~ig~vfQ~~---------~l~p~~tv~enl~~~l~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNY---------ALFPHLKVEDNVAFGLR--AQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCc---------ccCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHH
Confidence 799999985 68999999999988643 111112223467889999999975 57888888 43 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
||+|+.+|+
T Consensus 149 ARAL~~~P~ 157 (362)
T TIGR03258 149 ARAIAIEPD 157 (362)
T ss_pred HHHHhcCCC
Confidence 999999996
No 26
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=2.5e-28 Score=169.28 Aligned_cols=142 Identities=13% Similarity=0.184 Sum_probs=112.3
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
..|.++|+ |+|+.+.++.++| +|+++|.|||||||||.+.++.|+..|++|.|.+++ .++.. .+-....+..
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~-~diT~-lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD-EDITK-LPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECC-ccccc-CChHHHhhcC
Confidence 35899999 9999999999998 799999999999999999999999999999999998 45433 2333345778
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEE--eCHHHHHHHHHhcCccc--CC-CeeEEe-Ch---h
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS--VNPKRVSDLFSSVNLNV--NN-PHFLIM-QG---R 148 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~--~~-~~~l~~-q~---~ 148 (159)
|+|.+|.+ ..|..+||++|+..-.. .+..+.. ..+.+++++|+.++|.+ +. ..+||+ ++ .
T Consensus 81 igYLpQE~---------SIFr~LtV~dNi~~vlE--~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEA---------SIFRKLTVEDNIMAVLE--IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccc---------hHhhcCcHHHHHHHHHh--hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHH
Confidence 99999996 58889999999976543 3222222 22345789999999987 33 456666 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
|||+|+.+|+
T Consensus 150 IARaLa~~P~ 159 (243)
T COG1137 150 IARALAANPK 159 (243)
T ss_pred HHHHHhcCCC
Confidence 9999999996
No 27
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.8e-27 Score=179.91 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=109.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++++++ +++++|+|||||||||||++|+|+..|++|+|+++| +++.. ....++.|
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g-~~i~~----~~~~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDG-VDLSH----VPPYQRPI 93 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECCC----CCHHHCCE
Confidence 4899999 9998877888777 789999999999999999999999999999999988 33211 11235679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|+||++ .+|+++||.+|+.++.. ..........+++.++++.++|.. .+|..||+ |+ +|||
T Consensus 94 g~vfQ~~---------~lfp~ltv~eNi~~~l~--~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSY---------ALFPHMTVEQNIAFGLK--QDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCC---------ccCCCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 9999985 68999999999988643 110112223467889999999975 57888888 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 163 AL~~~P~ 169 (377)
T PRK11607 163 SLAKRPK 169 (377)
T ss_pred HHhcCCC
Confidence 9999996
No 28
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1.7e-26 Score=172.90 Aligned_cols=141 Identities=13% Similarity=0.204 Sum_probs=111.2
Q ss_pred EEEEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 3 IKSMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 3 ~~~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
+..++++|+ |.|+ .+.+|+++| |++++|+|||||||||||++|+|+..|++|+|.+.|. +... .....+
T Consensus 2 ~~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~-~~~~---~~~~~~ 77 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGY-DVVK---EPAKVR 77 (293)
T ss_pred CceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCE-eCcc---CHHHHH
Confidence 345889999 9999 699999998 6899999999999999999999999999999999883 2211 011246
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
+.|+|++|++ .+++++|+.|++.+... ++........+++.++++.++|.. .....+|+ |+ .
T Consensus 78 ~~igy~~~~~---------~~~~~lT~~e~l~~~~~--l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ 146 (293)
T COG1131 78 RRIGYVPQEP---------SLYPELTVRENLEFFAR--LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLS 146 (293)
T ss_pred hheEEEccCC---------CCCccccHHHHHHHHHH--HhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHH
Confidence 7899999996 58899999999988543 222222234578999999999986 23456766 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
||.+|+.+|+
T Consensus 147 ia~aL~~~P~ 156 (293)
T COG1131 147 IALALLHDPE 156 (293)
T ss_pred HHHHHhcCCC
Confidence 9999999995
No 29
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.9e-26 Score=163.69 Aligned_cols=142 Identities=21% Similarity=0.218 Sum_probs=109.5
Q ss_pred EEEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.++++++ ..|.+. .++.+++ +++++|+|+||||||||+++++|++.|+.|.+.++|. ++.. .......+++
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~-~~~~-~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGL-DTSS-EKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCe-eccc-hhhHHHhhcc
Confidence 4789999 888765 7888887 6899999999999999999999999999999988873 2211 0111225788
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
|++|||+|+.+.+. -||.+.+.|+..... -...+..+++.++++.+++.. +.|..||+ |+ +||
T Consensus 81 vG~VfQnpd~q~~~--------~tV~~evafg~~n~g--~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 81 VGLVFQNPDDQLFG--------PTVEDEVAFGLENLG--LPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA 150 (235)
T ss_pred eEEEEECccccccc--------CcHHHHHhhchhhcC--CCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhh
Confidence 99999999765322 388888988765211 122235678999999999975 67899988 44 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
.+|+++|+
T Consensus 151 ~vLa~~P~ 158 (235)
T COG1122 151 GVLAMGPE 158 (235)
T ss_pred HHHHcCCC
Confidence 99999996
No 30
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.9e-26 Score=177.68 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=107.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..+|++++ +++++|+|||||||||||++|+|++.|++|+|.++| +++.. . ...++.|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g-~~i~~-~---~~~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE-KRMND-V---PPAERGV 77 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECCC-C---CHhHCCE
Confidence 4899999 9998888888887 789999999999999999999999999999999887 33211 0 1123579
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|+||++ .+++++||.+|+.++.. ..........+++.++++.++|.. ..+..||+ |+ +|||
T Consensus 78 ~~v~Q~~---------~l~~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSY---------ALYPHLSVAENMSFGLK--LAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCc---------ccCCCCCHHHHHHhHHh--hcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence 9999985 57888999999987632 110111222457889999999975 56778888 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 147 aL~~~P~ 153 (369)
T PRK11000 147 TLVAEPS 153 (369)
T ss_pred HHhcCCC
Confidence 9999996
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.91 E-value=3.6e-26 Score=175.04 Aligned_cols=139 Identities=18% Similarity=0.250 Sum_probs=108.3
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+|||||||||||++|+|+++|++|+|.++| +++.. ....++.++
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g-~~i~~----~~~~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG-TDVSR----LHARDRKVG 77 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCC----CCHHHCCEE
Confidence 789999 9999888888887 789999999999999999999999999999999988 33211 111245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
|+||++ .+++++||.+|+.++.... +.........+++.++++.++|.. ..|..+|+ |+ +||
T Consensus 78 ~v~Q~~---------~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 78 FVFQHY---------ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALA 148 (353)
T ss_pred EEecCc---------ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 999984 6889999999998864310 000111223467889999999975 56788888 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
|+|+.+|+
T Consensus 149 rAL~~~P~ 156 (353)
T PRK10851 149 RALAVEPQ 156 (353)
T ss_pred HHHhcCCC
Confidence 99999996
No 32
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.91 E-value=4.1e-26 Score=171.98 Aligned_cols=143 Identities=14% Similarity=0.172 Sum_probs=108.8
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|+...|+++|+ +.|++..+|+++| |++++|+||||||||||+++|+|++.|++|++++.| .++.... ...
T Consensus 3 ~~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G-~~~~~~~---~~~ 78 (306)
T PRK13537 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG-EPVPSRA---RHA 78 (306)
T ss_pred CCCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-Eecccch---HHH
Confidence 44557999999 9999888999998 789999999999999999999999999999999988 3332111 123
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--- 147 (159)
++.|++++|++ .+++.+|+.+|+.+... .+........+++.++++.++|.. .....+|+ |+
T Consensus 79 ~~~ig~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 147 (306)
T PRK13537 79 RQRVGVVPQFD---------NLDPDFTVRENLLVFGR--YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL 147 (306)
T ss_pred HhcEEEEeccC---------cCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHH
Confidence 57899999985 46778899999876432 111111222456778999999975 34556766 33
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 148 ~la~aL~~~P~ 158 (306)
T PRK13537 148 TLARALVNDPD 158 (306)
T ss_pred HHHHHHhCCCC
Confidence 99999999996
No 33
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.91 E-value=2.2e-26 Score=175.35 Aligned_cols=141 Identities=16% Similarity=0.256 Sum_probs=107.2
Q ss_pred EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-Ccee
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~ 74 (159)
|+++|+ +.|++ ..+|+++| +++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G-~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDG-QDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCcCCHHHHHHH
Confidence 789999 99952 46899988 789999999999999999999999999999999988 333211100 0113
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--- 147 (159)
++.|+|+||++ .+++..||.+|+.++.. .....+....+++.++++.++|.. .+|.+||+ |+
T Consensus 81 r~~Ig~v~Q~~---------~l~~~~tv~eni~~~~~--~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV 149 (343)
T TIGR02314 81 RRQIGMIFQHF---------NLLSSRTVFGNVALPLE--LDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV 149 (343)
T ss_pred hcCEEEEECCc---------cccccCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 56899999984 57788899999987532 110112233467889999999975 57888888 43
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
+|||+|+.+|+
T Consensus 150 ~IARAL~~~P~ 160 (343)
T TIGR02314 150 AIARALASNPK 160 (343)
T ss_pred HHHHHHHhCCC
Confidence 99999999996
No 34
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=5.1e-27 Score=160.70 Aligned_cols=144 Identities=18% Similarity=0.308 Sum_probs=112.7
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh-hC-------
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK-NG------- 69 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~-~~------- 69 (159)
..|+++++ |+|++..+|+++| |+++.|||.+||||||+|+||+.+..|..|.|+.+| .++.-. +.
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~g-eei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNG-EEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECC-eEEEeeeCCCCCeeeC
Confidence 46899999 9999999999998 799999999999999999999999999999998876 222110 00
Q ss_pred ---CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeE
Q psy17514 70 ---QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFL 143 (159)
Q Consensus 70 ---~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l 143 (159)
+....|.++++|||+ ++++.++||.+|+.-.... .....+.+..+++..+|..+||.. .+|.++
T Consensus 84 d~~q~~r~Rs~L~mVFQ~---------FNLWsHmtvLeNViEaPvh-VLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~L 153 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQH---------FNLWSHMTVLENVIEAPVH-VLGVSKAEAIERAEKYLAKVGIAEKADAYPAHL 153 (256)
T ss_pred CHHHHHHHHHHhhHhhhh---------cchhHHHHHHHHHHhcchH-hhcCCHHHHHHHHHHHHHHhCchhhhhcCcccc
Confidence 001235678999998 6899999999998754321 111223344577888999999976 589999
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||+|+++|+
T Consensus 154 SGGQQQR~aIARaLameP~ 172 (256)
T COG4598 154 SGGQQQRVAIARALAMEPE 172 (256)
T ss_pred CchHHHHHHHHHHHhcCCc
Confidence 99 33 99999999996
No 35
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=2.3e-25 Score=152.63 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=108.0
Q ss_pred EEEeCe-eeecCCeeeecCC---CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD---REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~---~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
|.++++ .+|++.+--.++. +++++|+|||||||||||+.|+|+..|.+|+|.++| ++.... ....+=|+++
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g-~d~t~~----~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILING-VDHTAS----PPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcC-eecCcC----CcccCChhhh
Confidence 677888 8888765222332 799999999999999999999999999999999998 443221 1235669999
Q ss_pred EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhc
Q psy17514 82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLN 154 (159)
Q Consensus 82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~ 154 (159)
||+. ++|.++||.+|+.++.....+++.. .++++..++..+||.. +-|.++|+ |+ ++||+|+
T Consensus 77 FQEn---------NLFaHLtV~qNigLGl~P~LkL~a~--~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQEN---------NLFAHLTVAQNIGLGLSPGLKLNAE--QREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLV 145 (231)
T ss_pred hhcc---------ccchhhhhhhhhcccCCcccccCHH--HHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHh
Confidence 9984 7999999999999988766665543 4578899999999976 67999999 44 9999987
Q ss_pred CC
Q psy17514 155 MK 156 (159)
Q Consensus 155 ~~ 156 (159)
.+
T Consensus 146 R~ 147 (231)
T COG3840 146 RE 147 (231)
T ss_pred cc
Confidence 54
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.90 E-value=2e-25 Score=170.19 Aligned_cols=143 Identities=18% Similarity=0.196 Sum_probs=107.6
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|.+..|+++|+ +.|++..+|+++| |++++|+||||||||||+++|+|++.|++|++.++| .++.. .....
T Consensus 37 ~~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G-~~~~~---~~~~~ 112 (340)
T PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG-VPVPA---RARLA 112 (340)
T ss_pred CCceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECC-EECCc---chHHH
Confidence 34456999999 9999888999988 789999999999999999999999999999999988 33211 11123
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--- 147 (159)
++.|++++|++ .+++.+|+.+|+.+... .+........+++.++++.++|.. ..+..+|+ |+
T Consensus 113 ~~~ig~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv 181 (340)
T PRK13536 113 RARIGVVPQFD---------NLDLEFTVRENLLVFGR--YFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRL 181 (340)
T ss_pred hccEEEEeCCc---------cCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHH
Confidence 56799999985 46677899999875322 111111122345678899999975 44567777 33
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 182 ~lA~aL~~~P~ 192 (340)
T PRK13536 182 TLARALINDPQ 192 (340)
T ss_pred HHHHHHhcCCC
Confidence 99999999996
No 37
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3e-25 Score=153.73 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=108.9
Q ss_pred EEEEEeCe-eeecCCe--eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 4 KSMVLDGF-KSYGTRV--EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~--~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.++.++++ .+|.++. ++.++| +++++++|||||||||||+.++|+..|+.|+|..++ +.+ . ...
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~-r~i---~----gPg 73 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG-RRI---E----GPG 73 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECC-Eec---c----CCC
Confidence 45788999 9998876 788887 799999999999999999999999999999998877 221 1 134
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-h
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-R 148 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ 148 (159)
+.-++|||++ .++|.+++.+|+.++.. .+--.+....+.+.+++..+||.. +++.++|+ |+ -
T Consensus 74 aergvVFQ~~---------~LlPWl~~~dNvafgL~--l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvG 142 (259)
T COG4525 74 AERGVVFQNE---------ALLPWLNVIDNVAFGLQ--LRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVG 142 (259)
T ss_pred ccceeEeccC---------ccchhhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHH
Confidence 5568999995 68899999999999865 332233334556788999999976 56788888 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
|||||+.+|+
T Consensus 143 iARALa~eP~ 152 (259)
T COG4525 143 IARALAVEPQ 152 (259)
T ss_pred HHHHhhcCcc
Confidence 9999999996
No 38
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=3.4e-25 Score=163.00 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=100.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVI 102 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv 102 (159)
||+++|+|-||||||||+++|+++..|++|+|.++| +++..-+ .-...+++++++|||+ |.++|+.||
T Consensus 54 GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g-~di~~~~~~~Lr~~Rr~~~sMVFQ~---------FaLlPhrtV 123 (386)
T COG4175 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDG-KDIAKLSAAELRELRRKKISMVFQS---------FALLPHRTV 123 (386)
T ss_pred CeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECC-cchhcCCHHHHHHHHhhhhhhhhhh---------hccccchhH
Confidence 689999999999999999999999999999999998 4553211 1123357789999998 689999999
Q ss_pred EEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhHhhcCCCC
Q psy17514 103 CRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTKVLNMKPH 158 (159)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~~l~~~p~ 158 (159)
.+|+.|+.. ...-.+.+.++++.++++.+||.. .+|.+||+ |+ -+||||+.+|+
T Consensus 124 l~Nv~fGLe--v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~ 184 (386)
T COG4175 124 LENVAFGLE--VQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPD 184 (386)
T ss_pred hhhhhccee--ecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCC
Confidence 999999864 333334455678899999999976 68999999 33 99999999996
No 39
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.89 E-value=6e-25 Score=170.36 Aligned_cols=142 Identities=11% Similarity=0.135 Sum_probs=106.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|+++.+|++++ |++++|+|||||||||||++|+|+++|++|+|++.| +++.. .. ....++.+
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G-~~i~~-~~-~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAG-DDVEA-LS-ARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECC-EEcCc-CC-HHHHhcce
Confidence 4899999 9999988999988 789999999999999999999999999999999988 33211 00 11135679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE-EECC-EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY-MING-SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
++++|++ .++..+|+.+|+.++...+. .... .....+++.++++.+++.. ..+..+|+ |+ .|
T Consensus 80 g~v~q~~---------~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDT---------SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL 150 (402)
T ss_pred EEEccCC---------CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 9999985 35566899998877532110 1111 1223467889999999975 44667777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
||+|+.+|+
T Consensus 151 ArAL~~~P~ 159 (402)
T PRK09536 151 ARALAQATP 159 (402)
T ss_pred HHHHHcCCC
Confidence 999999996
No 40
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.89 E-value=4.4e-25 Score=159.06 Aligned_cols=141 Identities=20% Similarity=0.278 Sum_probs=103.0
Q ss_pred EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--Cce
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGV 73 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~ 73 (159)
|+++|+ +.|++ ..++.+++ +++++|+||||||||||+++|+|+++|++|+|.++| .++...... ...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDG-TDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECC-EehhhcchhHHHHH
Confidence 468899 89976 67888887 689999999999999999999999999999999887 333211100 011
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-- 147 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-- 147 (159)
.++.+++++|++ .+++.+|+.+|+.++.. +.........+++.++++.++|.. ..+..+|+ |+
T Consensus 80 ~~~~i~~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (218)
T cd03255 80 RRRHIGFVFQSF---------NLLPDLTALENVELPLL--LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQR 148 (218)
T ss_pred HhhcEEEEeecc---------ccCCCCcHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHH
Confidence 245799999985 46677899999876532 110011122356788999999975 45677877 33
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 149 v~la~al~~~p~ 160 (218)
T cd03255 149 VAIARALANDPK 160 (218)
T ss_pred HHHHHHHccCCC
Confidence 99999999986
No 41
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.2e-24 Score=158.96 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=103.0
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|+++|++|+|+++| +++.. . ...++.++
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~---~~~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGG-EDATD-V---PVQERNVG 77 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCc-C---CccccceE
Confidence 789999 9998888899888 789999999999999999999999999999999987 33211 0 11245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC---CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN---GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
+++|++ .+++.+|+.+|+.++... .... ......+++.++++.++|.. ..+..+|+ |+ +|
T Consensus 78 ~v~q~~---------~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 78 FVFQHY---------ALFRHMTVFDNVAFGLRV-KPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EEecCC---------cccCCCCHHHHHhhhhhh-ccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHH
Confidence 999985 356677899998765320 1000 11112346778899999964 45677777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++++.+|+
T Consensus 148 a~al~~~p~ 156 (239)
T cd03296 148 ARALAVEPK 156 (239)
T ss_pred HHHHhcCCC
Confidence 999999986
No 42
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.89 E-value=5e-25 Score=158.62 Aligned_cols=141 Identities=18% Similarity=0.260 Sum_probs=103.5
Q ss_pred EEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC-ceeEE
Q psy17514 6 MVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA-GVTKA 76 (159)
Q Consensus 6 l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~~ 76 (159)
|+++|+ +.|++ +.++++++ +++++|+||||||||||+++|+|+++|++|+|.++| .++....... ...++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNG-QDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EehhhcChhHHHHHHH
Confidence 789999 99964 46888887 789999999999999999999999999999999987 3332111100 11245
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.+++++|++ .+++.+|+.+|+.++.. ..........+++.++++.++|.. ..+..+|+ |+ ++
T Consensus 81 ~i~~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDH---------RLLSDRTVYDNVAFPLR--IIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCc---------cccccccHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 799999985 46677899999876422 110011123457888999999965 45677877 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++++.+|+
T Consensus 150 aral~~~p~ 158 (216)
T TIGR00960 150 ARAIVHKPP 158 (216)
T ss_pred HHHHhcCCC
Confidence 999999996
No 43
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.4e-25 Score=160.78 Aligned_cols=142 Identities=20% Similarity=0.248 Sum_probs=103.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~i 78 (159)
|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....++.|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG-EDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccChhhHHHHhcce
Confidence 468899 8998888888887 789999999999999999999999999999999887 332110000 01135679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++++|++ .+++.+|+.+|+.++... +.........+++.++++.++|.. ..+..+|+ |+ +||+
T Consensus 80 ~~v~q~~---------~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~ 149 (235)
T cd03261 80 GMLFQSG---------ALFDSLTVFENVAFPLRE-HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALAR 149 (235)
T ss_pred EEEccCc---------ccCCCCcHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 9999985 466778999998764220 100011122356788899999965 45677877 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 150 al~~~p~ 156 (235)
T cd03261 150 ALALDPE 156 (235)
T ss_pred HHhcCCC
Confidence 9999986
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.9e-25 Score=158.67 Aligned_cols=138 Identities=14% Similarity=0.226 Sum_probs=102.8
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+++|++|+|.+++ .++.. . ....++.++
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~--~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAG-HDVVR--E-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EecCc--C-hHHHhhcEE
Confidence 478999 9998888888888 789999999999999999999999999999999887 22211 1 011245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ ++|++
T Consensus 77 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDL---------SVDDELTGWENLYIHAR--LYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCc---------cccccCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHH
Confidence 999985 35667789888876422 110011123456788999999975 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 146 l~~~p~ 151 (220)
T cd03265 146 LVHRPE 151 (220)
T ss_pred HhcCCC
Confidence 999986
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.5e-25 Score=158.10 Aligned_cols=137 Identities=20% Similarity=0.289 Sum_probs=101.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|+++.++++++ +++++|+||||||||||+++|+|+++|++|+|.+++ .++.. . ...++.++
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-~---~~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG-RDVTG-V---PPERRNIG 75 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEcCc-C---chhhccEE
Confidence 468899 9998878888888 689999999999999999999999999999999887 33211 1 11245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ +||++
T Consensus 76 ~v~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDY---------ALFPHLTVAENIAFGLK--LRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCch---------hhccCCcHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 999985 36667789998876421 110011122356788999999975 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 145 l~~~p~ 150 (213)
T cd03259 145 LAREPS 150 (213)
T ss_pred HhcCCC
Confidence 999986
No 46
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.5e-25 Score=154.60 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=108.0
Q ss_pred EEEeCe-eeecCCe-eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYGTRV-EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~~~~-~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
|++.++ |+|++.+ ++.+++ |++++|.|||||||||+|++|+.++.|++|.+.++|. +..+. + ...+++|
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~-d~~~~-p--~~vrr~I 77 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV-DTVRD-P--SFVRRKI 77 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeec-ccccC-h--HHHhhhc
Confidence 789999 9999876 788888 6899999999999999999999999999999999984 43331 1 2357889
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~ 151 (159)
+++|.. ..+|..+|++||+.+.+.- +.. +....+++..++.+.++|.. .....+|- |+ .|||
T Consensus 78 GVl~~e---------~glY~RlT~rEnl~~Fa~L-~~l-~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iAR 146 (245)
T COG4555 78 GVLFGE---------RGLYARLTARENLKYFARL-NGL-SRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIAR 146 (245)
T ss_pred ceecCC---------cChhhhhhHHHHHHHHHHH-hhh-hhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHH
Confidence 999843 3588899999999875431 112 22334678899999999976 33445555 44 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
||+.+|.
T Consensus 147 Alvh~P~ 153 (245)
T COG4555 147 ALVHDPS 153 (245)
T ss_pred HHhcCCC
Confidence 9999996
No 47
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.9e-24 Score=169.04 Aligned_cols=143 Identities=15% Similarity=0.282 Sum_probs=110.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ |+|+...+|++++ ||+++|+|+||||||||+++|+|.++|++|+|.++| +.+.. ..........|
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G-~~~~~-~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG-KPVAF-SSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECC-EEccC-CCHHHHHhCCc
Confidence 6899999 9999999999998 799999999999999999999999999999999998 33321 11222346789
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc--CCC-eeEEe-Ch---hH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV--NNP-HFLIM-QG---RV 149 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~--~~~-~~l~~-q~---~i 149 (159)
..|+|+. ++.|++||.+|+.++.... +.+-+.+...++..++|+.+++.. +.+ ..|+. |+ +|
T Consensus 86 ~~V~QEl---------~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 86 ATVHQEL---------SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred EEEeech---------hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 9999994 7899999999998875421 122233445677889999999853 223 23333 43 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|||+..+++
T Consensus 157 ArAl~~~ar 165 (500)
T COG1129 157 ARALSFDAR 165 (500)
T ss_pred HHHHhcCCC
Confidence 999988774
No 48
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.88 E-value=4.6e-24 Score=164.68 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=111.6
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
..++++++ |.|++..+++++| +|+.+|+|+||||||||+++|+|++.|++|+|+++| +.+.. ..+....+..
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G-~~v~~-~sP~dA~~~G 80 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG-KEVRI-KSPRDAIRLG 80 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECC-EEecc-CCHHHHHHcC
Confidence 35899999 9999999999888 799999999999999999999999999999999998 44322 2233345788
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-EEECCEEeCHHHHHHHHHhcCcccC--C-CeeEEe---Ch-hH
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-YMINGSSVNPKRVSDLFSSVNLNVN--N-PHFLIM---QG-RV 149 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~--~-~~~l~~---q~-~i 149 (159)
|+||+|. |.++|.+||.||+.++.... ...-+.....+++.++.+.+||..+ . -..++- |+ .|
T Consensus 81 IGMVhQH---------F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 81 IGMVHQH---------FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred CcEEeec---------cccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 9999998 57899999999999986532 1122334456788899999999763 2 223322 33 88
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
-++|..+|+
T Consensus 152 lKaLyr~a~ 160 (501)
T COG3845 152 LKALYRGAR 160 (501)
T ss_pred HHHHhcCCC
Confidence 888888775
No 49
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=5.9e-25 Score=168.01 Aligned_cols=141 Identities=18% Similarity=0.265 Sum_probs=104.5
Q ss_pred EEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-Ccee
Q psy17514 6 MVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~ 74 (159)
|+++|+ ++|+ +..+|.+++ |++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g-~~i~~~~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDG-QDLTALSEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECCcCCHHHHHHH
Confidence 789999 9997 357888887 789999999999999999999999999999999987 332110000 0012
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--- 147 (159)
++.|+++||++ .+++.+|+.+|+.++.. +.........+++.++++.++|.. ..+..+|+ |+
T Consensus 81 ~~~ig~v~q~~---------~l~~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 81 RRQIGMIFQHF---------NLLSSRTVFDNVALPLE--LAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV 149 (343)
T ss_pred hcCEEEEeCCC---------ccCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 46799999985 46777899999977532 110111122356788999999975 45778887 43
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 150 ~lAraL~~~p~ 160 (343)
T PRK11153 150 AIARALASNPK 160 (343)
T ss_pred HHHHHHHcCCC
Confidence 99999999996
No 50
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=3.5e-25 Score=169.76 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=101.8
Q ss_pred eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--ceeEEEEEEEEEc
Q psy17514 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA--GVTKASVTLTFDN 84 (159)
Q Consensus 12 ~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~~~i~~v~q~ 84 (159)
|.|+++.++++++ |++++|+|||||||||||++|+|+.+|++|+|.++| +++....... ...++.++|+||.
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G-~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG-ENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECC-EECCcCCHHHHHHHHhCcEEEEECC
Confidence 4577777888887 799999999999999999999999999999999988 3321100000 0015689999998
Q ss_pred CCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCC
Q psy17514 85 SDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKP 157 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p 157 (159)
+ .+++++||.+|+.++.. +....+....+++.++++.++|.. .+|.+||+ |+ +|||+|+.+|
T Consensus 80 ~---------~l~~~~TV~eNi~~~~~--~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 80 F---------ALFPHMTILQNTSLGPE--LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred C---------cCCCCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5 58888999999987532 211112223467889999999975 57888888 33 9999999999
Q ss_pred C
Q psy17514 158 H 158 (159)
Q Consensus 158 ~ 158 (159)
+
T Consensus 149 ~ 149 (363)
T TIGR01186 149 D 149 (363)
T ss_pred C
Confidence 6
No 51
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=4.1e-24 Score=168.23 Aligned_cols=145 Identities=19% Similarity=0.278 Sum_probs=110.6
Q ss_pred EEEEeCe-eeecC-----------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh
Q psy17514 5 SMVLDGF-KSYGT-----------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK 67 (159)
Q Consensus 5 ~l~l~~~-~~~~~-----------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~ 67 (159)
.|+++|+ +.|.. ..+++++| ||+++|+|+||||||||.++|.|+..|++|.+.+.| .+.--.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g-~~~~~~ 358 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDG-QDLDLT 358 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeC-cccccc
Confidence 4789999 88873 24677887 799999999999999999999999999999999988 332111
Q ss_pred hCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeE
Q psy17514 68 NGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFL 143 (159)
Q Consensus 68 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l 143 (159)
.......++.+.++||+|.. .++|.+||.+++..+..-..... .....+++.++++.++|.. ++|.++
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~-------SLnPr~tV~~~i~epL~~~~~~~-~~~~~~rv~~ll~~VgL~~~~l~ryP~el 430 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYS-------SLNPRMTVGDILAEPLRIHGGGS-GAERRARVAELLELVGLPPEFLDRYPHEL 430 (539)
T ss_pred cchhhhhhhheEEEEeCccc-------ccCccccHHHHHHhHHhhhcccc-hHHHHHHHHHHHHHcCCCHHHHhcCchhc
Confidence 11122246789999999863 57888999998877643111111 2233457999999999976 689999
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||||+.+|+
T Consensus 431 SGGQrQRvaIARALa~~P~ 449 (539)
T COG1123 431 SGGQRQRVAIARALALEPK 449 (539)
T ss_pred CcchhHHHHHHHHHhcCCC
Confidence 99 54 99999999996
No 52
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.3e-23 Score=151.26 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=100.2
Q ss_pred Ce-eeecCCeeeecCC--C-CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEEEEEEEE
Q psy17514 10 GF-KSYGTRVEINDFD--R-EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKASVTLTFD 83 (159)
Q Consensus 10 ~~-~~~~~~~~l~~~~--~-~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~i~~v~q 83 (159)
|+ +.+++..+=.++. + ++++|.|+||||||||+++|+|+..|+.|.|..+|. -+....+ .-...+++|+||||
T Consensus 5 ~~~~~lG~~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr-~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 5 NFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR-VLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred ehhhhcCceEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCE-EeecccCCcccChhhheeeeEee
Confidence 45 5566654222222 3 899999999999999999999999999999988872 1111010 01224688999999
Q ss_pred cCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhHhhcCC
Q psy17514 84 NSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTKVLNMK 156 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~~l~~~ 156 (159)
+. .+||++||+.|+.++.+ ......++.+.+.+||.+ ++|..||+ |+ +|+|||..+
T Consensus 84 DA---------RLFpH~tVrgNL~YG~~--------~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~ 146 (352)
T COG4148 84 DA---------RLFPHYTVRGNLRYGMW--------KSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred cc---------ccccceEEecchhhhhc--------ccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence 94 79999999999999854 114567888999999987 78999999 55 999999999
Q ss_pred CC
Q psy17514 157 PH 158 (159)
Q Consensus 157 p~ 158 (159)
|+
T Consensus 147 P~ 148 (352)
T COG4148 147 PE 148 (352)
T ss_pred CC
Confidence 96
No 53
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.88 E-value=1.5e-24 Score=157.65 Aligned_cols=140 Identities=13% Similarity=0.177 Sum_probs=102.3
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|+++.++.+++ +++++|+|||||||||||++|+|+++|++|++.++| .++.. .......+..++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG-QDITK-LPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-Eeccc-CCHhHHHhccEE
Confidence 478899 9998888889887 689999999999999999999999999999999887 33211 110111235699
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+... ..........+++.++++.+++.. ..+..+|+ |+ ++|++
T Consensus 79 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEA---------SIFRKLTVEENILAVLE--IRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCc---------cccccCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999985 46677899998876421 110111122346778999999975 45667777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 148 l~~~p~ 153 (232)
T cd03218 148 LATNPK 153 (232)
T ss_pred HhcCCC
Confidence 999986
No 54
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.88 E-value=2.1e-24 Score=162.66 Aligned_cols=139 Identities=18% Similarity=0.236 Sum_probs=103.6
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..+|++++ |++++|+|||||||||||++|+|++.|++|+++++| .++.. .....++.+
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~---~~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLG-EPVPS---RARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECcc---cHHHHhhcE
Confidence 4899999 9998888899888 789999999999999999999999999999999887 33211 011135679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++++|++ .+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ +||+
T Consensus 80 ~~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFD---------NLDPEFTVRENLLVFGR--YFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccc---------cCCcCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999985 46667899999875321 110111112345678899999975 45667777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 149 al~~~p~ 155 (303)
T TIGR01288 149 ALINDPQ 155 (303)
T ss_pred HHhcCCC
Confidence 9999996
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.88 E-value=1.8e-24 Score=155.33 Aligned_cols=137 Identities=15% Similarity=0.230 Sum_probs=101.7
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+++|++|++.+++ .++.. .. ..+..++
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g-~~~~~-~~---~~~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG-RDVTD-LP---PKDRDIA 75 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCc-CC---cccceEE
Confidence 468899 8898878888887 789999999999999999999999999999999887 33211 11 1235799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++..|+.+|+.++.. ..........+++.++++.+++.. ..+..+|+ |+ ++|++
T Consensus 76 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNY---------ALYPHMTVYDNIAFGLK--LRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecCh---------hhccCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHH
Confidence 999985 35666788888876421 110111222456788899999964 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 145 l~~~p~ 150 (213)
T cd03301 145 IVREPK 150 (213)
T ss_pred HhcCCC
Confidence 999986
No 56
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=9.6e-25 Score=147.36 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=109.0
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH-HHHHhh--CCCceeE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ-ELIYKN--GQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~-~~~~~~--~~~~~~~ 75 (159)
.|+++|+ +.|+..++|.|++ |+..+++||+|||||||++.+..+.-|++|++.+.+.. ++.... +.....|
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 4789999 8999988888886 78999999999999999999999999999988776521 111101 1112246
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
+.+++|||. |+++|++||.+|+.-.... ...-.+.....++.++|+.+.|.. +.|..+|+ |+ +
T Consensus 82 ~~vgmvfqq---------y~lwphltv~enlieap~k-v~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 82 RNVGMVFQQ---------YNLWPHLTVQENLIEAPCR-VLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred Hhhhhhhhh---------hccCchhHHHHHHHhhhHH-HhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 789999998 6899999999998654211 111123334567888999998865 67889998 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
|||+|+++|+
T Consensus 152 iaralmmkpq 161 (242)
T COG4161 152 IARALMMEPQ 161 (242)
T ss_pred HHHHHhcCCc
Confidence 9999999996
No 57
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2e-24 Score=155.95 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=101.0
Q ss_pred EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
|+++|+ +.|++ ..++.+++ +++++|+||||||||||+++|+|+++|++|+|.++| .++. ..+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~-------~~~ 72 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG-EPVT-------GPG 72 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECc-------ccc
Confidence 468899 88976 67888887 689999999999999999999999999999999887 2221 124
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
..+++++|.+ .+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ +
T Consensus 73 ~~i~~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~ 141 (220)
T cd03293 73 PDRGYVFQQD---------ALLPWLTVLDNVALGLE--LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVA 141 (220)
T ss_pred CcEEEEeccc---------ccccCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH
Confidence 5799999985 35666789888876421 110011122456788999999965 45677777 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
+|++++.+|+
T Consensus 142 la~al~~~p~ 151 (220)
T cd03293 142 LARALAVDPD 151 (220)
T ss_pred HHHHHHcCCC
Confidence 9999999986
No 58
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=3.2e-25 Score=153.44 Aligned_cols=145 Identities=19% Similarity=0.298 Sum_probs=113.5
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
..|+++|+ .+|++..++.++| |++.+|||||||||||++++|+|--+|+.|++.+++-.++.. -+.....++.
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~-~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK-LPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhcc-CCHHHHHHhc
Confidence 46899999 9999999999988 799999999999999999999999999999999988555543 2333446788
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE------EEECCEEeCHHHHHHHHHhcCccc--CCCeeEEe--Ch
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR------YMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIM--QG 147 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~--q~ 147 (159)
|+--||.| ..|+++||++|+.+..... .+..-..+...+++++|+..+|.+ +.++.+++ |+
T Consensus 83 IGRKFQ~P---------tVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 83 IGRKFQKP---------TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred cCccccCC---------eehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 99999997 5889999999997643211 111112233568999999999987 34455555 44
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
.|.++++.+|+
T Consensus 154 QwLEIGMll~Q~P~ 167 (249)
T COG4674 154 QWLEIGMLLAQDPK 167 (249)
T ss_pred hhhhhheeeccCCc
Confidence 99999999996
No 59
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.88 E-value=5.5e-24 Score=155.67 Aligned_cols=143 Identities=16% Similarity=0.243 Sum_probs=103.4
Q ss_pred EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514 6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~ 77 (159)
|+++|+ +.|+ +..++.+++ +++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....+..
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG-TDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECC-EEhhhCCHHHHHHHHhh
Confidence 789999 9997 777888888 689999999999999999999999999999999887 333210000 0112457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---EE-E-C-CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---YM-I-N-GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG 147 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~~-~-~-~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~ 147 (159)
+++++|++ .+++.+|+.+|+.++.... +. . . ......+++.++++.++|.. ..+..+|+ |+
T Consensus 81 i~~v~q~~---------~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 81 IGMIFQHY---------NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151 (243)
T ss_pred eEEEcCCC---------cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 99999985 3667789999987642210 00 0 0 11122456788999999965 45677777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 152 qrv~la~al~~~p~ 165 (243)
T TIGR02315 152 QRVAIARALAQQPD 165 (243)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999986
No 60
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=6.3e-24 Score=154.57 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=104.6
Q ss_pred CeEEEEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC
Q psy17514 1 MYIKSMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ 70 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~ 70 (159)
|.-..|+++|+ +.|++ ..+|++++ +++++|+||||||||||+++|+|+++|++|+|.++| +++......
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~i~~~~~~ 79 (233)
T PRK11629 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG-QPMSKLSSA 79 (233)
T ss_pred CCCceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEcCcCCHH
Confidence 33345899999 99964 46888887 689999999999999999999999999999999987 332110000
Q ss_pred C--ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe
Q psy17514 71 A--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM 145 (159)
Q Consensus 71 ~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~ 145 (159)
. ...++.|++++|++ .+++.+|+.+|+.+... +.........+++.++++.++|.. ..+..+|+
T Consensus 80 ~~~~~~~~~i~~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 148 (233)
T PRK11629 80 AKAELRNQKLGFIYQFH---------HLLPDFTALENVAMPLL--IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSG 148 (233)
T ss_pred HHHHHHhccEEEEecCc---------ccCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence 0 01125699999985 46677899999876421 110011222356788999999965 45677777
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 149 G~~qrl~la~al~~~p~ 165 (233)
T PRK11629 149 GERQRVAIARALVNNPR 165 (233)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 61
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.88 E-value=2.5e-24 Score=162.10 Aligned_cols=138 Identities=15% Similarity=0.184 Sum_probs=105.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
++++|+ ++|++..+|++++ |++++|+|||||||||||++|+|++.|++|+|.+.| .++.. . ....++.++
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g-~~~~~-~--~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCG-EDVLQ-N--PKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccc-C--hHHHHhceE
Confidence 799999 9999888999988 789999999999999999999999999999999988 33211 1 112356799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|.+ .+++.+|+.+|+.+... .+........+++.++++.++|.. ..+..+|+ |+ ++|++
T Consensus 79 ~~~q~~---------~l~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHN---------PLYLDMYVREYLQFIAG--IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCC---------CCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHH
Confidence 999985 47778899999876432 110011222457888999999975 34566776 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 148 l~~~p~ 153 (301)
T TIGR03522 148 LIHDPK 153 (301)
T ss_pred HhcCCC
Confidence 999996
No 62
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3e-24 Score=153.93 Aligned_cols=135 Identities=13% Similarity=0.169 Sum_probs=101.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|+++|++|+|.++| .++.. ..++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~------~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG-KPLDI------AARNRIG 73 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-CchhH------HHHccEE
Confidence 468899 8898777888877 789999999999999999999999999999999987 33321 1345799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+... .+........+++.++++.+++.. ..+..+|+ |+ ++|++
T Consensus 74 ~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEER---------GLYPKMKVIDQLVYLAQ--LKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCC---------cCCcCCcHHHHHHHHHH--HcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHH
Confidence 999985 46667799998866422 110011223456788999999965 45667777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 143 l~~~p~ 148 (210)
T cd03269 143 VIHDPE 148 (210)
T ss_pred HhcCCC
Confidence 999885
No 63
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.88 E-value=1.8e-24 Score=156.13 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=101.7
Q ss_pred EEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|++ ..++++++ |++++|+||||||||||+++|+|+++|++|+|.++| .++.. . ....++.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~--~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYING-YSIRT-D--RKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-Eeccc-c--hHHHhhh
Confidence 478899 89976 67888887 789999999999999999999999999999999887 33211 1 1113457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
+++++|++ .+++..|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ +||
T Consensus 77 i~~v~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 77 LGYCPQFD---------ALFDELTVREHLRFYAR--LKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLA 145 (220)
T ss_pred EEEecCcC---------CccccCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHH
Confidence 99999985 46667789888876422 110011122356788999999965 44667777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 146 ~al~~~p~ 153 (220)
T cd03263 146 IALIGGPS 153 (220)
T ss_pred HHHhcCCC
Confidence 99999986
No 64
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-23 Score=153.82 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=102.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|+++|++|+|.+++ .++. ..++.+
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g-~~~~-------~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT-APLA-------EAREDT 83 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEHH-------HhhCce
Confidence 5899999 9998888888888 789999999999999999999999999999998876 2221 124569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++++|++ .+++.+|+.+|+.++.. . ...+++.++++.++|.. ..+..+|+ |+ +||+
T Consensus 84 ~~v~q~~---------~l~~~~tv~enl~~~~~------~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~lar 146 (257)
T PRK11247 84 RLMFQDA---------RLLPWKKVIDNVGLGLK------G--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALAR 146 (257)
T ss_pred EEEecCc---------cCCCCCcHHHHHHhccc------c--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 9999985 35666799999876421 1 12457788999999965 45677777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 147 aL~~~p~ 153 (257)
T PRK11247 147 ALIHRPG 153 (257)
T ss_pred HHhcCCC
Confidence 9999986
No 65
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=9e-24 Score=150.99 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=99.2
Q ss_pred EEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 7 VLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 7 ~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
+++|+ +.|++ ..++.+++ +++++|+|||||||||||++|+|+++|++|+|.+++ .++.. ...++.++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-----~~~~~~i~ 74 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG-KPIKA-----KERRKSIG 74 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEhhh-----HHhhcceE
Confidence 36788 88987 77888887 789999999999999999999999999999999887 33311 11345799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++. ..+...|+.+|+.++.. . .+ ...+++.++++.++|.. ..+..+|+ |+ ++|++
T Consensus 75 ~~~q~~~--------~~~~~~tv~e~l~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 140 (205)
T cd03226 75 YVMQDVD--------YQLFTDSVREELLLGLK--E--LD--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAA 140 (205)
T ss_pred EEecChh--------hhhhhccHHHHHhhhhh--h--cC--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHH
Confidence 9999852 12234588898876432 1 11 12357889999999975 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 141 l~~~p~ 146 (205)
T cd03226 141 LLSGKD 146 (205)
T ss_pred HHhCCC
Confidence 999986
No 66
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-24 Score=167.64 Aligned_cols=142 Identities=15% Similarity=0.233 Sum_probs=104.1
Q ss_pred EEEEeCe-eeecCCe------------------------eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514 5 SMVLDGF-KSYGTRV------------------------EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVK 54 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~------------------------~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g 54 (159)
.|+++|+ |.|+... ++++++ +++++|+|||||||||||++|+|++.|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 5888888 8887643 677777 789999999999999999999999999999
Q ss_pred chhhhhHHHHHHhhCCC--ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHh
Q psy17514 55 QVRANTLQELIYKNGQA--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSS 132 (159)
Q Consensus 55 ~i~~~~~~~~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (159)
+|.++| .++....... ...++.++|+||++ .+++++|+.+|+.++.. ..........+++.++++.
T Consensus 84 ~I~i~G-~~i~~~~~~~l~~~~~~~igyv~Q~~---------~l~~~~Tv~enl~~~~~--~~~~~~~~~~~~~~e~L~~ 151 (400)
T PRK10070 84 QVLIDG-VDIAKISDAELREVRRKKIAMVFQSF---------ALMPHMTVLDNTAFGME--LAGINAEERREKALDALRQ 151 (400)
T ss_pred EEEECC-EECCcCCHHHHHHHHhCCEEEEECCC---------cCCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHH
Confidence 999987 3321100000 01235799999985 57788899999987532 1101112234577889999
Q ss_pred cCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 133 VNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 133 ~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
++|.. ..|..||+ |+ +|||+|+.+|+
T Consensus 152 ~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~ 184 (400)
T PRK10070 152 VGLENYAHSYPDELSGGMRQRVGLARALAINPD 184 (400)
T ss_pred cCCChhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99975 56788888 33 99999999996
No 67
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.6e-24 Score=160.43 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=105.7
Q ss_pred CeEEEEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCc
Q psy17514 1 MYIKSMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~ 72 (159)
|+...|+++|+ +.|++ ..++++++ |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ..
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g-~~i~~-~~-~~ 77 (279)
T PRK13635 1 MKEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG-MVLSE-ET-VW 77 (279)
T ss_pred CCCceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-EECCc-Cc-HH
Confidence 55556999999 99964 45888887 789999999999999999999999999999999988 33211 01 11
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG- 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~- 147 (159)
..++.|+|+||++. ..+...|+.+|+.++... ... ......+++.++++.++|.. ..+..+|+ |+
T Consensus 78 ~~~~~i~~~~q~~~--------~~~~~~tv~enl~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q 147 (279)
T PRK13635 78 DVRRQVGMVFQNPD--------NQFVGATVQDDVAFGLEN-IGV-PREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQ 147 (279)
T ss_pred HHhhheEEEEeCHH--------HhcccccHHHHHhhhHhh-CCC-CHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHH
Confidence 12457999999852 244556899998765321 100 11222356788999999975 46777777 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 148 rv~laral~~~p~ 160 (279)
T PRK13635 148 RVAIAGVLALQPD 160 (279)
T ss_pred HHHHHHHHHcCCC
Confidence 99999999996
No 68
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.88 E-value=1.8e-24 Score=155.83 Aligned_cols=138 Identities=11% Similarity=0.154 Sum_probs=102.9
Q ss_pred EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
|+++|+ +.|++. .++.+++ +++++|+|+||||||||+++|+|+++|++|+|.+++ .++.. . ....+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~--~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG-FDVVK-E--PAEAR 77 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECC-EEccc-C--HHHHH
Confidence 789999 999876 7888887 789999999999999999999999999999999887 33211 1 11134
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
+.+++++|++ .+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ +
T Consensus 78 ~~i~~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 146 (218)
T cd03266 78 RRLGFVSDST---------GLYDRLTARENLEYFAG--LYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVA 146 (218)
T ss_pred hhEEEecCCc---------ccCcCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHH
Confidence 6799999985 46677789999875422 110011123457788999999975 45667777 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
+|++++.+|+
T Consensus 147 laral~~~p~ 156 (218)
T cd03266 147 IARALVHDPP 156 (218)
T ss_pred HHHHHhcCCC
Confidence 9999999986
No 69
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.88 E-value=4e-24 Score=154.37 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=101.6
Q ss_pred EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--ce
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA--GV 73 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~--~~ 73 (159)
|+++|+ +.|++ ..++.+++ +++++|+|||||||||||++|+|+++|++|++.++| .++....... ..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNG-QSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEhhhcCHhHHHHH
Confidence 688999 89964 46888887 789999999999999999999999999999999887 3332111000 01
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-- 147 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-- 147 (159)
.++.+++++|++ .+++.+|+.+|+.+... +.........+++.++++.++|.. ..+..+|+ |+
T Consensus 81 ~~~~i~~v~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 149 (221)
T TIGR02211 81 RNKKLGFIYQFH---------HLLPDFTALENVAMPLL--IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQR 149 (221)
T ss_pred HHhcEEEEeccc---------ccCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence 125799999985 36667799999876421 110011122356788999999965 45677877 33
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 150 v~laral~~~p~ 161 (221)
T TIGR02211 150 VAIARALVNQPS 161 (221)
T ss_pred HHHHHHHhCCCC
Confidence 99999999986
No 70
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.88 E-value=9e-22 Score=169.77 Aligned_cols=153 Identities=39% Similarity=0.652 Sum_probs=127.7
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCC--ceeEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQA--GVTKAS 77 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~--~~~~~~ 77 (159)
|.+..|++.|||+|.+.+ ..+++.++++|+||||||||++++||.+.++.. .-.+|...+.|+++.+... +...+.
T Consensus 1 m~lk~i~l~gFKSF~~~~-~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~ 79 (1163)
T COG1196 1 MYLKRIELKGFKSFADPT-EINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAE 79 (1163)
T ss_pred CeeeEEEEECcccCCCCe-eeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceE
Confidence 789999999999999944 457899999999999999999999999999876 5567777777887655433 223589
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p 157 (159)
|.++|.+.+.. .|. .+.+.+|.+.+...+.+.|++||..+..+.+.+++...||..+++ ++++||.|..++.++|
T Consensus 80 V~l~fdN~d~~-~~~---~~~ei~v~Rri~r~g~S~Y~INg~~~~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~~kp 154 (1163)
T COG1196 80 VELTFDNSDNT-LPL---EYEEISVTRRIYRDGESEYYINGEKVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINAKP 154 (1163)
T ss_pred EEEEEeCCCCc-CCc---ccceEEEEEEEEEcCCcEEEECCcEeeHHHHHHHHHhcCCCCCCC-ceeecccHHHHHcCCH
Confidence 99999987632 222 234788888888877789999999999999999999999998878 8999999999999999
Q ss_pred CC
Q psy17514 158 HE 159 (159)
Q Consensus 158 ~~ 159 (159)
.|
T Consensus 155 ~e 156 (1163)
T COG1196 155 EE 156 (1163)
T ss_pred HH
Confidence 64
No 71
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.88 E-value=2.1e-24 Score=155.00 Aligned_cols=142 Identities=19% Similarity=0.254 Sum_probs=102.0
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+++|++|++.++| .++..........++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG-LKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCccchhHHHHHhcce
Confidence 468899 8998878888887 689999999999999999999999999999999887 222100000011346799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+.... ++-.......+++.++++.+++.. ..+..+|+ |+ ++|++
T Consensus 80 ~~~q~~---------~~~~~~t~~e~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 149 (213)
T cd03262 80 MVFQQF---------NLFPHLTVLENITLAPIK-VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 149 (213)
T ss_pred EEeccc---------ccCCCCcHHHHHHhHHHH-hcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHH
Confidence 999985 366677999988764210 110011122356788899999865 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 150 l~~~p~ 155 (213)
T cd03262 150 LAMNPK 155 (213)
T ss_pred HhcCCC
Confidence 999986
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.87 E-value=7.2e-24 Score=153.65 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=101.7
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh-----CCcccchhhhhHHHHHHhhCCCcee
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL-----GIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~-----~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|+++|+ +.|+++.++++++ +++++|+||||||||||+++|+|++ +|++|+|.++| +++..........
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG-KDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECC-EEhhhcchHHHHH
Confidence 478899 8998888888887 7899999999999999999999999 89999999987 3332111001113
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCE-EeCHHHHHHHHHhcCccc---CC--CeeEEe-Ch
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS-SVNPKRVSDLFSSVNLNV---NN--PHFLIM-QG 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~---~~--~~~l~~-q~ 147 (159)
++.+++++|++ .++ .+|+.+|+.++.. ...... ....+++.++++.+++.. .. +..+|+ |+
T Consensus 80 ~~~i~~~~q~~---------~~~-~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 80 RRRVGMVFQKP---------NPF-PGSIYDNVAYGLR--LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQ 147 (227)
T ss_pred HhhEEEEecCc---------hhc-cccHHHHHHhHHH--hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHH
Confidence 46799999985 345 5799999876532 110011 112456788999999965 23 477777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 148 qrv~la~al~~~p~ 161 (227)
T cd03260 148 QRLCLARALANEPE 161 (227)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999986
No 73
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.2e-24 Score=156.90 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=101.5
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++.+++ |++++|+|||||||||||++|+|+++|++|+|.++| .++. . ....++
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~---~----~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG-KPVE---G----PGAERG 73 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECC---C----CCCcEE
Confidence 789999 9998878888888 789999999999999999999999999999999887 3321 1 123589
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++..|+.+|+.++.. ..........+++.++++.++|.. ..+..+|+ |+ ++|++
T Consensus 74 ~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNE---------GLLPWRNVQDNVAFGLQ--LAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCC---------ccCCCCcHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHH
Confidence 999985 35666789998876421 110011122356788999999965 45677877 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 143 l~~~p~ 148 (255)
T PRK11248 143 LAANPQ 148 (255)
T ss_pred HhcCCC
Confidence 999986
No 74
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.87 E-value=2.4e-24 Score=156.93 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=101.5
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++.+++ |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .......+..++
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG-EDITG-LPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECC-EECCC-CCHHHHHhcCEE
Confidence 468899 8998777888887 689999999999999999999999999999999887 22211 000011234699
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE--------CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI--------NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG 147 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~ 147 (159)
+++|++ .+++.+|+.+|+.++....... .......+++.++++.++|.. ..+..+|+ |+
T Consensus 79 ~v~q~~---------~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 149 (236)
T cd03219 79 RTFQIP---------RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQ 149 (236)
T ss_pred EEeccc---------ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHH
Confidence 999985 4677789999987643210000 001122346788999999965 45667777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 150 qrv~la~al~~~p~ 163 (236)
T cd03219 150 RRLEIARALATDPK 163 (236)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999986
No 75
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=3.8e-24 Score=156.32 Aligned_cols=142 Identities=17% Similarity=0.215 Sum_probs=103.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|++.|++|+|+++| .++..........++.++
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG-LKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCcCChhHHHHhhceE
Confidence 789999 9998888888887 689999999999999999999999999999999987 232110000011346799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.++... ..........+++.++++.++|.. ..+..+|+ |+ +||++
T Consensus 81 ~~~q~~---------~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 81 MVFQQF---------YLFPHLTALENVMFGPLR-VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred EEeccc---------ccCCCCcHHHHHHhHHHH-hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 999985 356677898888664210 110111222356788999999965 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 151 l~~~p~ 156 (240)
T PRK09493 151 LAVKPK 156 (240)
T ss_pred HhcCCC
Confidence 999986
No 76
>PRK10908 cell division protein FtsE; Provisional
Probab=99.87 E-value=4.7e-24 Score=154.14 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=101.8
Q ss_pred EEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514 6 MVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~ 77 (159)
|+++|+ +.| +++.++++++ +++++|+||||||||||+++|+|+++|++|+|.++| .++...... ....++.
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSG-HDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEcccCChhHHHHHHhh
Confidence 789999 999 6677888887 789999999999999999999999999999999887 332110000 0012467
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
++|++|++ .+++.+|+.+|+.+... ..........+++.++++.+++.. ..+..+|+ |+ ++|
T Consensus 81 i~~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDH---------HLLMDRTVYDNVAIPLI--IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCc---------cccccccHHHHHHhHHH--hcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHH
Confidence 99999985 35566788888876421 110011112345778899999865 45677777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 150 ral~~~p~ 157 (222)
T PRK10908 150 RAVVNKPA 157 (222)
T ss_pred HHHHcCCC
Confidence 99999986
No 77
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.5e-24 Score=159.69 Aligned_cols=143 Identities=18% Similarity=0.266 Sum_probs=101.9
Q ss_pred EEEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|+. +.+|++++ |++++|+||||||||||+++|+|++.|++|+|.++| .++.........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG-VDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECC-EECCCcCccHHH
Confidence 4899999 99964 35888887 789999999999999999999999999999999988 332110000011
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc--c---CCCeeEEe-Ch
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN--V---NNPHFLIM-QG 147 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~---~~~~~l~~-q~ 147 (159)
.+..|+|+||++.. .++ ..||.+|+.++... ... ......+++.++++.++|. . ..+..+|+ |+
T Consensus 81 ~~~~ig~v~q~~~~-------~~~-~~tv~e~l~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~ 150 (287)
T PRK13637 81 IRKKVGLVFQYPEY-------QLF-EETIEKDIAFGPIN-LGL-SEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQK 150 (287)
T ss_pred HhhceEEEecCchh-------ccc-cccHHHHHHhHHHH-CCC-CHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHH
Confidence 35689999998631 122 35888988764321 101 1112235678899999995 2 45677877 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 151 qrv~iAraL~~~P~ 164 (287)
T PRK13637 151 RRVAIAGVVAMEPK 164 (287)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999996
No 78
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.87 E-value=7.3e-24 Score=151.72 Aligned_cols=133 Identities=14% Similarity=0.218 Sum_probs=102.4
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+++|++|+|.+++ .++... ...++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~----~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG-KSYQKN----IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-Ccccch----HHHHhhEE
Confidence 468899 8998888888887 689999999999999999999999999999999987 332111 11345799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+... .. +. ..+++.++++.++|.. ..+..+|+ |+ ++|++
T Consensus 76 ~~~q~~---------~~~~~~tv~e~l~~~~~--~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 76 ALIEAP---------GFYPNLTARENLRLLAR--LL--GI--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred EecCCC---------ccCccCcHHHHHHHHHH--hc--CC--cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHH
Confidence 999985 36677899999876432 11 11 3467888999999965 44667777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 141 l~~~p~ 146 (208)
T cd03268 141 LLGNPD 146 (208)
T ss_pred HhcCCC
Confidence 999985
No 79
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.87 E-value=3e-24 Score=154.35 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=102.2
Q ss_pred EEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514 6 MVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~ 77 (159)
|+++|+ +.| ++..++.+++ +++++|+||||||||||+++|+|+++|++|+|.+++ .++...... ....++.
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG-EDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcccCCHHHHHHHHhh
Confidence 789999 999 4667888887 689999999999999999999999999999998877 332110000 0012457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
+++++|++ .+++.+|+.+|+.+... +.........+++.++++.++|.. ..+..+|+ |+ ++|
T Consensus 81 i~~~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDF---------RLLPDRTVYENVALPLE--VRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecCh---------hhccCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 99999985 35667789998876421 110011122456788999999965 45677777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 150 ~al~~~p~ 157 (214)
T TIGR02673 150 RAIVNSPP 157 (214)
T ss_pred HHHhCCCC
Confidence 99999986
No 80
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.3e-24 Score=156.00 Aligned_cols=141 Identities=19% Similarity=0.268 Sum_probs=103.1
Q ss_pred EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC-cee
Q psy17514 6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA-GVT 74 (159)
Q Consensus 6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~ 74 (159)
|+++|+ +.|++. .++.+++ +++++|+||||||||||+++|+|+++|++|+|.++| .++....... ...
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG-TDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcccCCHHHHHHH
Confidence 789999 999876 7888887 789999999999999999999999999999999987 3321100000 012
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--- 147 (159)
++.+++++|++ .+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+
T Consensus 81 ~~~i~~~~q~~---------~~~~~~t~~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (233)
T cd03258 81 RRRIGMIFQHF---------NLLSSRTVFENVALPLE--IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRV 149 (233)
T ss_pred HhheEEEccCc---------ccCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHH
Confidence 45799999985 46677899999876421 110111122356788999999975 45667776 33
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 150 ~la~al~~~p~ 160 (233)
T cd03258 150 GIARALANNPK 160 (233)
T ss_pred HHHHHHhcCCC
Confidence 99999999985
No 81
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.2e-23 Score=154.56 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=102.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|++.| ++|+|.++| .++.. .. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~i~~-~~-~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG-QDIFK-MD-VIE 79 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC-EECCc-CC-HHH
Confidence 4899999 9998888888888 689999999999999999999999874 699999887 33211 11 112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.+..|++++|++ .+++.+|+.+|+.++..............+++.++++.++|.. ..+..+|+
T Consensus 80 ~~~~i~~v~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 150 (250)
T PRK14247 80 LRRRVQMVFQIP---------NPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGG 150 (250)
T ss_pred HhccEEEEeccC---------ccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHH
Confidence 356799999985 3566789999987643200000111222356788999999841 35667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 151 ~~qrv~laral~~~p~ 166 (250)
T PRK14247 151 QQQRLCIARALAFQPE 166 (250)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 82
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.7e-24 Score=154.18 Aligned_cols=143 Identities=17% Similarity=0.254 Sum_probs=102.4
Q ss_pred EEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-CceeEEE
Q psy17514 6 MVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~ 77 (159)
|+++|+ +.|++ ..++.+++ |++++|+||||||||||+++|+|+++|++|+|.++| +++...... ....++.
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG-TDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECC-EeccccCHhHHHHHHhc
Confidence 468899 89986 77888888 789999999999999999999999999999999887 332110000 0112457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---E-EECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---Y-MING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG 147 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~-~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~ 147 (159)
+++++|++ .+++.+|+.+|+.++.... + ...+ .....+++.++++.++|.. ..+..+|+ |+
T Consensus 80 i~~~~q~~---------~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 80 IGMIFQQF---------NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred cEEEcccC---------cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence 99999985 4667778988887642210 0 0001 1122456788899999964 45677777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 151 qrv~la~al~~~p~ 164 (241)
T cd03256 151 QRVAIARALMQQPK 164 (241)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999986
No 83
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.9e-24 Score=154.22 Aligned_cols=141 Identities=11% Similarity=0.181 Sum_probs=103.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|+++.++.+++ |++++|+||||||||||+++|+|+++|++|++.++| .++.. .......+..+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDD-EDISL-LPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCC-CCHHHHHHhCe
Confidence 4899999 9998888888888 789999999999999999999999999999999887 23211 00001124579
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC-CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN-GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
++++|++ .+++.+|+.+|+.+... +... ......+++.++++.+++.. ..+..+|+ |. ++|
T Consensus 81 ~~~~q~~---------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEA---------SIFRRLSVYDNLMAVLQ--IRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCC---------cccccCcHHHHHhhhhh--cccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHH
Confidence 9999985 46667789998876421 1100 11122456788999999865 34567777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 150 ral~~~p~ 157 (241)
T PRK10895 150 RALAANPK 157 (241)
T ss_pred HHHhcCCC
Confidence 99999985
No 84
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=1e-23 Score=154.89 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=103.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC------CCc
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG------QAG 72 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~------~~~ 72 (159)
.|+++|+ +.|+++.++.+++ |++++|+||||||||||+++|+|++.|++|+|.+++ .++..... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGD-ITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEccccccccchhhHHH
Confidence 4899999 9998878889888 689999999999999999999999999999998877 33211000 001
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG- 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~- 147 (159)
..+..+++++|++ .+++..|+.+|+.++.. .+.........+++.++++.++|.. ..+..+|+ |+
T Consensus 82 ~~~~~i~~v~q~~---------~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~q 151 (250)
T PRK11264 82 QLRQHVGFVFQNF---------NLFPHRTVLENIIEGPV-IVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQ 151 (250)
T ss_pred HhhhhEEEEecCc---------ccCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHH
Confidence 1245799999985 46666789998865321 0110011122356788899999965 45677777 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 152 rv~la~al~~~p~ 164 (250)
T PRK11264 152 RVAIARALAMRPE 164 (250)
T ss_pred HHHHHHHHhcCCC
Confidence 99999999985
No 85
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.8e-24 Score=169.09 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=106.5
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC--cccchhhhhHHHHHHhhCCCc
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI--QVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i~~~~~~~~~~~~~~~~ 72 (159)
|+...|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|+++| ++|+|.++| .++.. .....
T Consensus 1 ~~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g-~~~~~-~~~~~ 78 (506)
T PRK13549 1 MMEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEG-EELQA-SNIRD 78 (506)
T ss_pred CCCceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC-EECCC-CCHHH
Confidence 44446999999 9998888899988 689999999999999999999999986 799999887 33210 00000
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~ 147 (159)
..++.+++++|++ .+++.+|+.+|+.++.... ..........+++.++++.+++.. ..+..||+ |+
T Consensus 79 ~~~~~i~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 149 (506)
T PRK13549 79 TERAGIAIIHQEL---------ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQ 149 (506)
T ss_pred HHHCCeEEEEecc---------ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHH
Confidence 1235699999985 4667789999998763210 000011122356788999999964 35667777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 150 qrv~la~al~~~p~ 163 (506)
T PRK13549 150 QLVEIAKALNKQAR 163 (506)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999996
No 86
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.3e-24 Score=155.77 Aligned_cols=139 Identities=17% Similarity=0.269 Sum_probs=102.2
Q ss_pred EEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
|+++|+ +.|++ ..++++++ |++++|+||||||||||+++|+|+++|++|+|.++| +++..... ...+..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~--~~~~~~i 77 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG-EDIREQDP--VELRRKI 77 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-eEcCcCCh--HHhhcce
Confidence 468899 88987 77888887 789999999999999999999999999999999887 33211011 1124579
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-----CCCeeEEe-Ch---hH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-----NNPHFLIM-QG---RV 149 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~l~~-q~---~i 149 (159)
+|++|++ .+++.+|+.+|+.+... +.........+++.++++.++|.. ..+..+|+ |+ ++
T Consensus 78 ~~~~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~l 146 (242)
T cd03295 78 GYVIQQI---------GLFPHMTVEENIALVPK--LLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGV 146 (242)
T ss_pred EEEccCc---------cccCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHH
Confidence 9999985 46677899999876422 110111222456788999999972 45667777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++++.+|+
T Consensus 147 aral~~~p~ 155 (242)
T cd03295 147 ARALAADPP 155 (242)
T ss_pred HHHHhcCCC
Confidence 999999986
No 87
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.1e-24 Score=158.83 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=103.6
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ +.|+. ..+|.+++ |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ....+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~-~~-~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG-DLLTE-EN-VWDIR 80 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EECCc-Cc-HHHHH
Confidence 5899999 99963 45888887 789999999999999999999999999999999988 33211 00 11134
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
+.++++||++. ..++..||.+|+.++.. ..........+++.++++.++|.. ..+..+|+ |+ +
T Consensus 81 ~~i~~v~q~~~--------~~~~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~ 150 (279)
T PRK13650 81 HKIGMVFQNPD--------NQFVGATVEDDVAFGLE--NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVA 150 (279)
T ss_pred hhceEEEcChH--------HhcccccHHHHHHhhHH--hCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH
Confidence 57999999852 24455689999877532 110112222456788999999975 46778877 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
||++++.+|+
T Consensus 151 lAral~~~p~ 160 (279)
T PRK13650 151 IAGAVAMRPK 160 (279)
T ss_pred HHHHHHcCCC
Confidence 9999999996
No 88
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.9e-23 Score=151.11 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=101.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|+++|++|+|.++| .++..... ...++.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~--~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG-VDIKTIDV--IDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEhhhcCh--HHhhhcE
Confidence 4899999 9998878888888 789999999999999999999999999999999987 33321111 1134679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~ia 150 (159)
++++|++ .+++ .|+.+|+.+... . .+ ....++.++++.++|. . ..+..+|+ |+ ++|
T Consensus 80 ~~~~q~~---------~~~~-~tv~e~l~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 80 GMVFQQP---------HLFE-GTVKDNIEYGPM--L--KG--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred EEEecCc---------hhch-hhHHHHHhcchh--h--cC--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 9999985 3444 488888766421 1 11 1235678899999995 2 45677777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 144 ~al~~~p~ 151 (241)
T PRK14250 144 RTLANNPE 151 (241)
T ss_pred HHHhcCCC
Confidence 99999986
No 89
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.2e-23 Score=158.38 Aligned_cols=143 Identities=18% Similarity=0.235 Sum_probs=102.5
Q ss_pred EEEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh------
Q psy17514 5 SMVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK------ 67 (159)
Q Consensus 5 ~l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~------ 67 (159)
.|+++|+ +.|++. .+|.+++ |++++|+||||||||||+++|+|+++|++|++++++. +....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~-~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFK-DEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEece-ecccccccccc
Confidence 4899999 999743 4788887 7899999999999999999999999999999998762 21000
Q ss_pred ---------h-------CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHH
Q psy17514 68 ---------N-------GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFS 131 (159)
Q Consensus 68 ---------~-------~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (159)
. ......++.|+|+||++.. .++ ..||.+|+.++... .........+++.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~-------~l~-~~tv~e~i~~~~~~--~~~~~~~~~~~~~~~l~ 150 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY-------QLF-EQTIEKDIIFGPVS--MGVSKEEAKKRAAKYIE 150 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCccc-------ccc-cccHHHHHHhhHHH--cCCCHHHHHHHHHHHHH
Confidence 0 0001235679999998632 233 35899998775321 10112223467889999
Q ss_pred hcCcc-c---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 132 SVNLN-V---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 132 ~~~l~-~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
.++|. . ..+..||+ |+ +||++|+.+|+
T Consensus 151 ~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~ 185 (305)
T PRK13651 151 LVGLDESYLQRSPFELSGGQKRRVALAGILAMEPD 185 (305)
T ss_pred HcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 99995 3 46788887 33 99999999996
No 90
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.87 E-value=4.6e-24 Score=152.50 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=100.1
Q ss_pred EeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEEEE
Q psy17514 8 LDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKASVT 79 (159)
Q Consensus 8 l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~i~ 79 (159)
++|+ +.|++..++++++ |++++|+||||||||||+++|+|+++|++|++.+++ .++..... .....++.++
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG-KETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEccccchhhHHHHHHhCee
Confidence 4688 8898778888887 689999999999999999999999999999998887 23210000 0011346799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .++++.|+.+|+.+... +.........+++.++++.++|.. ..+..+|+ |+ ++|++
T Consensus 80 ~~~q~~---------~~~~~~t~~e~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~lara 148 (206)
T TIGR03608 80 YLFQNF---------ALIENETVEENLDLGLK--YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARA 148 (206)
T ss_pred EEecch---------hhccCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHH
Confidence 999985 46677899998876421 110011223457788999999965 34567776 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 149 l~~~p~ 154 (206)
T TIGR03608 149 ILKDPP 154 (206)
T ss_pred HHcCCC
Confidence 999996
No 91
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.2e-24 Score=152.80 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=101.1
Q ss_pred EEEeCe-eeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|+++|+ +.|++..++++++ .++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ...++.+++
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~--~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG-QDVLK-QP--QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC-Ccccc-ch--HHHHhheEE
Confidence 468899 8998777888887 238999999999999999999999999999999887 33211 11 113567999
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhh
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVL 153 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l 153 (159)
++|++ .+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ ++|+++
T Consensus 77 ~~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEF---------GVYPNFTVREFLDYIAW--LKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCC---------cccccCCHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 99985 35667789998876421 110011122456788999999965 45677777 33 999999
Q ss_pred cCCCC
Q psy17514 154 NMKPH 158 (159)
Q Consensus 154 ~~~p~ 158 (159)
+.+|+
T Consensus 146 ~~~p~ 150 (211)
T cd03264 146 VGDPS 150 (211)
T ss_pred hcCCC
Confidence 99996
No 92
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.5e-23 Score=154.25 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=101.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|+++| ++|+|.++| .++.........
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG-RNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC-EEccccccChHH
Confidence 6899999 9998888899988 789999999999999999999999987 489999887 332100000011
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.+..+++++|++ .+++.+|+.+|+.++..............+++.++++.+++. ...+..+|+
T Consensus 83 ~~~~i~~~~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 83 VRREVGMVFQYP---------NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGG 153 (253)
T ss_pred HhhceeEEecCC---------ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHH
Confidence 345799999985 466778999998764210000001112234577888888873 145667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 154 ~~qrv~laral~~~p~ 169 (253)
T PRK14267 154 QRQRLVIARALAMKPK 169 (253)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 93
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.87 E-value=9e-24 Score=153.23 Aligned_cols=143 Identities=18% Similarity=0.185 Sum_probs=102.5
Q ss_pred EEEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--C
Q psy17514 4 KSMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--A 71 (159)
Q Consensus 4 ~~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~ 71 (159)
..|+++|+ +.|++ ..++.+++ |++++|+||||||||||+++|+|+++|++|+|.++| .++...... .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVG-QPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECC-EEcccCCHHHHH
Confidence 35899999 99975 25788887 789999999999999999999999999999998877 222110000 0
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG 147 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~ 147 (159)
...+..+++++|++ .+++.+|+.+|+.+... +.........+++.++++.++|.. ..+..+|+ |+
T Consensus 84 ~~~~~~i~~~~q~~---------~l~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~ 152 (228)
T PRK10584 84 KLRAKHVGFVFQSF---------MLIPTLNALENVELPAL--LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ 152 (228)
T ss_pred HHHhheEEEEEccc---------ccCCCcCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHH
Confidence 01135799999985 36667788888865421 110011223457888999999965 45677777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 153 qrl~la~al~~~p~ 166 (228)
T PRK10584 153 QRVALARAFNGRPD 166 (228)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999986
No 94
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.87 E-value=1.4e-23 Score=152.92 Aligned_cols=138 Identities=19% Similarity=0.286 Sum_probs=101.6
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|+++.++.+++ |++++|+||||||||||+++|+|+.+|++|+|.++| .++.. .. ....+.++
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~i~~-~~--~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG-HDLRR-AP--RAALARLG 77 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-EEccc-CC--hhhhhhEE
Confidence 789999 9998888888887 789999999999999999999999999999999887 33211 11 11234799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+... ..-.......+++.++++.++|.. ..+..+|+ |. ++|++
T Consensus 78 ~~~q~~---------~~~~~~t~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQP---------TLDLDLSVRQNLRYHAA--LHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCC---------CCcccCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHH
Confidence 999985 35566788888865421 110011112356788899999965 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 147 l~~~p~ 152 (236)
T TIGR03864 147 LLHRPA 152 (236)
T ss_pred HhcCCC
Confidence 999986
No 95
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.87 E-value=5.5e-24 Score=161.83 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=105.1
Q ss_pred EEEEeCe-eeecC-------------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHH
Q psy17514 5 SMVLDGF-KSYGT-------------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELI 65 (159)
Q Consensus 5 ~l~l~~~-~~~~~-------------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~ 65 (159)
.|+++|+ +.|+. ..++++++ |++++|+|+||||||||+++|+|++.|++|+|+++| .++.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G-~~i~ 86 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLG-KDLL 86 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECC-EECC
Confidence 4899999 88962 35788887 789999999999999999999999999999999987 3331
Q ss_pred HhhC-CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCC
Q psy17514 66 YKNG-QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNP 140 (159)
Q Consensus 66 ~~~~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~ 140 (159)
.... .....++.|+|+||++.. .+++.+|+.+|+.++.........+....+++.++++.++|.. .+|
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~-------~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p 159 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLA-------SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchh-------hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence 1000 000124579999999631 3667789999987643211000012223456788999999942 678
Q ss_pred eeEEe-C--h-hHhHhhcCCCC
Q psy17514 141 HFLIM-Q--G-RVTKVLNMKPH 158 (159)
Q Consensus 141 ~~l~~-q--~-~ia~~l~~~p~ 158 (159)
.+||+ | + +||++|+.+|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~ 181 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPK 181 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCC
Confidence 88988 3 3 99999999996
No 96
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.87 E-value=9.4e-24 Score=156.69 Aligned_cols=143 Identities=13% Similarity=0.172 Sum_probs=103.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC-CCceeEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG-QAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~~ 77 (159)
.|+++|+ +.|+++.++.+++ |++++|+|||||||||||++|+|+.+|++|+|.++| .++..... .....++.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG-ENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEccccChhhHHHHhhc
Confidence 5899999 9998888888887 789999999999999999999999999999999887 33211000 00012456
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
+++++|++ .+++.+|+.+|+.++... ..........+++.++++.++|.. ..+..+|+ |+ +||
T Consensus 86 i~~v~q~~---------~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 86 MSMLFQSG---------ALFTDMNVFDNVAYPLRE-HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred EEEEeccc---------ccCCCCCHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 99999985 466777899998764210 100011112346778899999975 45677777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 156 ral~~~p~ 163 (269)
T PRK11831 156 RAIALEPD 163 (269)
T ss_pred HHHhcCCC
Confidence 99999985
No 97
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.87 E-value=3.3e-24 Score=154.09 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=101.5
Q ss_pred EEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC-CCceeEEE
Q psy17514 6 MVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG-QAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~~ 77 (159)
|+++|+ +.|++ +.++.+++ +++++|+||||||||||+++|+|+++|++|++.+++ .++..... .....++.
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG-QDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEcccCCHHHHHHHHHh
Confidence 468899 88964 57888887 789999999999999999999999999999998877 33211000 00113457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
+++++|++ .+++.+|+.+|+.+... ..........+++.++++.+++.. ..+..+|+ |+ ++|
T Consensus 80 i~~v~q~~---------~~~~~~t~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDF---------RLLPDRNVYENVAFALE--VTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCc---------hhccCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence 99999985 46777899999876422 110011122356788999999865 45677777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 149 ral~~~p~ 156 (214)
T cd03292 149 RAIVNSPT 156 (214)
T ss_pred HHHHcCCC
Confidence 99999986
No 98
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.87 E-value=7.4e-24 Score=153.05 Aligned_cols=138 Identities=14% Similarity=0.197 Sum_probs=99.5
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|+++|++|++.+++ .++.. .......++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG-RDITG-LPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcCC-CCHHHHHhcCeE
Confidence 478899 8998878888887 689999999999999999999999999999999887 33211 010111245699
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhc-Cccc---CCCeeEEe-Ch---hHhH
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSV-NLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+++|++ .+++.+|+.+|+.+... .. +.....+++.++++.+ ++.. ..+..+|+ |+ ++|+
T Consensus 79 ~~~q~~---------~~~~~~t~~~~l~~~~~--~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lar 145 (222)
T cd03224 79 YVPEGR---------RIFPELTVEENLLLGAY--AR--RRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIAR 145 (222)
T ss_pred Eecccc---------ccCCCCcHHHHHHHHhh--hc--CchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHH
Confidence 999985 46777899999876532 11 1112234566777777 4543 45667777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 146 al~~~p~ 152 (222)
T cd03224 146 ALMSRPK 152 (222)
T ss_pred HHhcCCC
Confidence 9999885
No 99
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.6e-23 Score=153.20 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=102.5
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..+|.+++ |++++|+|+||||||||+++|+|+++|++|++.+++ .++.... ....++.++
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~--~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD-KPISMLS--SRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECC-EEhHHCC--HHHHhhheE
Confidence 789999 9998888899888 689999999999999999999999999999998887 3321100 011245699
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
+++|++ .+++.+|+.+|+.++.... ..........+++.++++.++|.. ..+..+|+ |. ++|
T Consensus 80 ~~~q~~---------~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 150 (255)
T PRK11231 80 LLPQHH---------LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLA 150 (255)
T ss_pred EecccC---------CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHH
Confidence 999985 3456678888887642111 110011122456788899999964 45677777 32 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 151 ral~~~p~ 158 (255)
T PRK11231 151 MVLAQDTP 158 (255)
T ss_pred HHHhcCCC
Confidence 99999986
No 100
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=1.4e-23 Score=167.74 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=104.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++++++ |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .......++.+
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG-KEVTF-NGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCC-CCHHHHHhCCE
Confidence 5899999 9998888899888 789999999999999999999999999999999887 33211 00001123569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC--CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN--GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
++++|++ .+++.+|+.+|+.++....-... ......+++.++++.++|.. ..+..+|+ |+ +|
T Consensus 82 ~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 152 (501)
T PRK10762 82 GIIHQEL---------NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI 152 (501)
T ss_pred EEEEcch---------hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence 9999985 46777899999987532100000 11112356788999999975 34677777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++|+.+|+
T Consensus 153 a~al~~~p~ 161 (501)
T PRK10762 153 AKVLSFESK 161 (501)
T ss_pred HHHHhcCCC
Confidence 999999996
No 101
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.8e-23 Score=167.40 Aligned_cols=147 Identities=16% Similarity=0.226 Sum_probs=106.4
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|+...|+++|+ +.|+++.++++++ |++++|+||||||||||+++|+|++.|++|+|.++| .++.. .......
T Consensus 1 ~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~i~~-~~~~~~~ 78 (510)
T PRK09700 1 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN-INYNK-LDHKLAA 78 (510)
T ss_pred CCCceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECC-EECCC-CCHHHHH
Confidence 44456999999 9998888899888 689999999999999999999999999999999887 23211 0000012
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCE-----EeCHHHHHHHHHhcCccc---CCCeeEEe-
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS-----SVNPKRVSDLFSSVNLNV---NNPHFLIM- 145 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~l~~---~~~~~l~~- 145 (159)
+..|++++|++ .+++.+||.+|+.++........+. ....+++.++++.++|.. ..+..+|+
T Consensus 79 ~~~i~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 149 (510)
T PRK09700 79 QLGIGIIYQEL---------SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSIS 149 (510)
T ss_pred HCCeEEEeecc---------cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHH
Confidence 34699999985 3667789999987653210000111 112356788999999964 45677877
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++|+.+|+
T Consensus 150 ~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 150 HKQMLEIAKTLMLDAK 165 (510)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999996
No 102
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-23 Score=157.29 Aligned_cols=147 Identities=19% Similarity=0.275 Sum_probs=104.5
Q ss_pred CeEEEEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCce
Q psy17514 1 MYIKSMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
|.-..|+++|+ +.|+ +..++++++ |++++|+||||||||||+++|+|+++|++|+|.++| .++.........
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g-~~~~~~~~~~~~ 79 (283)
T PRK13636 1 MEDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG-KPIDYSRKGLMK 79 (283)
T ss_pred CCCceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC-EECCCCcchHHH
Confidence 44457999999 9996 567888888 789999999999999999999999999999999988 332100000011
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-- 147 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-- 147 (159)
.++.++|+||++.. .+...|+.+|+.++... +.. ......+++.++++.++|.. ..+..+|+ |+
T Consensus 80 ~~~~ig~v~q~~~~--------~~~~~tv~e~l~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr 149 (283)
T PRK13636 80 LRESVGMVFQDPDN--------QLFSASVYQDVSFGAVN-LKL-PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKR 149 (283)
T ss_pred HHhhEEEEecCcch--------hhccccHHHHHHhHHHH-cCC-CHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHH
Confidence 34679999998521 22235888888764220 100 11122356788899999975 45677777 33
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
.||++|+.+|+
T Consensus 150 l~laraL~~~p~ 161 (283)
T PRK13636 150 VAIAGVLVMEPK 161 (283)
T ss_pred HHHHHHHHcCCC
Confidence 99999999986
No 103
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.3e-24 Score=158.21 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=102.3
Q ss_pred EEEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh--hCCC
Q psy17514 5 SMVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK--NGQA 71 (159)
Q Consensus 5 ~l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~--~~~~ 71 (159)
.|+++|+ +.|++ ..+|++++ |++++|+||||||||||+++|+|++.|++|+|+++| +++... ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~ 80 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGE-RVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-EECccccccchH
Confidence 4899999 99964 45888888 799999999999999999999999999999999988 332110 0001
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-C
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-Q 146 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q 146 (159)
...++.|+|+||++.. .++ ..||.+|+.++... .. .......+++.++++.++|. . ..+..+|+ |
T Consensus 81 ~~~~~~ig~v~q~~~~-------~l~-~~tv~eni~~~~~~-~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq 150 (290)
T PRK13634 81 KPLRKKVGIVFQFPEH-------QLF-EETVEKDICFGPMN-FG-VSEEDAKQKAREMIELVGLPEELLARSPFELSGGQ 150 (290)
T ss_pred HHHHhhEEEEeeCchh-------hhh-hhhHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHH
Confidence 1134679999998631 233 35899998765321 00 01112235678899999996 2 45777777 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ +||++|+.+|+
T Consensus 151 ~qrv~lAraL~~~P~ 165 (290)
T PRK13634 151 MRRVAIAGVLAMEPE 165 (290)
T ss_pred HHHHHHHHHHHcCCC
Confidence 3 99999999996
No 104
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3e-23 Score=148.88 Aligned_cols=135 Identities=21% Similarity=0.230 Sum_probs=98.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++.. .+++ +++++|+||||||||||+++|+|+++|++|++.++| .++.. . ...++.++
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g-~~~~~-~---~~~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING-VDVTA-A---PPADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcCc-C---CHhHccEE
Confidence 468889 8887644 2454 789999999999999999999999999999999887 33211 0 11235799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ +||++
T Consensus 74 ~~~q~~---------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQEN---------NLFAHLTVEQNVGLGLS--PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEeccc---------ccCCCCcHHHHHhcccc--cccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 999985 46677899999876532 100111123457888999999974 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 143 l~~~p~ 148 (211)
T cd03298 143 LVRDKP 148 (211)
T ss_pred HhcCCC
Confidence 999986
No 105
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.86 E-value=3.6e-23 Score=148.68 Aligned_cols=137 Identities=21% Similarity=0.240 Sum_probs=99.0
Q ss_pred EEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 7 VLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 7 ~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+++|++|++.++| .++.. .++.+++
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-------~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG-KPLEK-------ERKRIGY 72 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC-ccHHH-------HHhheEE
Confidence 36788 8898777888887 689999999999999999999999999999999987 33321 2457999
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE--CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI--NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++|++.. ..+...|+.+|+.++....... .......+++.++++.+++.. ..+..+|+ |+ +||+
T Consensus 73 v~q~~~~-------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSI-------DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred ecccccc-------ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9998521 0112368888887643210000 011122456788999999964 45677777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 146 al~~~p~ 152 (213)
T cd03235 146 ALVQDPD 152 (213)
T ss_pred HHHcCCC
Confidence 9999986
No 106
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=4.5e-22 Score=132.88 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=107.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
+.++|+ ...++...|.+++ +|++.|+||+||||||||..+.|.+.+. .|++..++ +++.. -...++
T Consensus 3 l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~-~~l~~----lPa~qR 77 (213)
T COG4136 3 LCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE-QRLDM----LPAAQR 77 (213)
T ss_pred eeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECC-eeccc----cchhhh
Confidence 678888 7777877777777 7999999999999999999999999886 68888776 44321 122578
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
++++.||++ -+||+++|.+|+.+...... .|. ..++.++..++..+|+. ..|.++|+ |+ ++
T Consensus 78 q~GiLFQD~---------lLFphlsVg~Nl~fAlp~~~--KG~-aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 78 QIGILFQDA---------LLFPHLSVGQNLLFALPATL--KGN-ARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred heeeeeccc---------ccccccccccceEEecCccc--ccH-HHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence 899999996 58999999999998654223 343 34566788899999975 67899998 76 88
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
-|+|...|+
T Consensus 146 ~R~Lla~Pk 154 (213)
T COG4136 146 LRALLAQPK 154 (213)
T ss_pred HHHHHhCcc
Confidence 899998886
No 107
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.1e-24 Score=157.40 Aligned_cols=141 Identities=18% Similarity=0.249 Sum_probs=102.7
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.|+ ...+++++| |++++|+||||||||||+++|+|+++|++|+|.++| .++.. ......+..
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~--~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMG-REVNA--ENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC-EECCC--CCHHHHHhh
Confidence 4899999 9996 567888887 799999999999999999999999999999999987 33210 000112457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
|+|+||++. ..+...||.+|+.++... ... ......+++.++++.++|.. ..|..+|+ |+ +||
T Consensus 81 i~~v~q~~~--------~~~~~~tv~e~l~~~~~~-~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 81 VGLVFQDPD--------DQVFSSTVWDDVAFGPVN-MGL-DKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEEecChh--------hhhccCcHHHHHHhhHHH-cCC-CHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHH
Confidence 999999852 123346888988765221 001 11122356788999999965 56778887 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++|+.+|+
T Consensus 151 raL~~~p~ 158 (274)
T PRK13647 151 GVLAMDPD 158 (274)
T ss_pred HHHHcCCC
Confidence 99999996
No 108
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.86 E-value=3.2e-23 Score=150.14 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=101.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+.+|++|++.+++ .++..... ...+..+
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~--~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG-EDISTLKP--EIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECC-EEcCcCCH--HHHHhcc
Confidence 4899999 9998888899988 789999999999999999999999999999999887 22211010 1134679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia 150 (159)
+++||++ .+++ .|+.+|+.+... +. +.....+++.++++.+++.. ..+..+|+ |. +||
T Consensus 84 ~~~~q~~---------~l~~-~tv~enl~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 84 SYCAQTP---------TLFG-DTVYDNLIFPWQ--IR--NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred EEEeccc---------cccc-ccHHHHHHhHHh--hc--CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence 9999985 3455 488888876421 11 11112356778999999952 45667777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 150 ral~~~p~ 157 (225)
T PRK10247 150 RNLQFMPK 157 (225)
T ss_pred HHHhcCCC
Confidence 99999986
No 109
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.8e-23 Score=152.58 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=103.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|+.+|++|+|.++| .++.. ... ...++.+
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~~-~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA-QPLES-WSS-KAFARKV 87 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC-Eehhh-CCH-HHHhhhe
Confidence 5899999 9998878899888 689999999999999999999999999999999987 33321 111 1124579
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
++++|++ .+++.+|+.+|+.++........+ .....+++.++++.+++.. ..+..+|+ |. ++
T Consensus 88 ~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQL---------PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWI 158 (265)
T ss_pred EEeccCC---------CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHH
Confidence 9999984 355667888888764211000000 1122356788999999964 45677777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++++.+|+
T Consensus 159 aral~~~p~ 167 (265)
T PRK10575 159 AMLVAQDSR 167 (265)
T ss_pred HHHHhcCCC
Confidence 999999986
No 110
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.86 E-value=6.7e-24 Score=159.83 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=97.5
Q ss_pred eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCC
Q psy17514 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSD 86 (159)
Q Consensus 12 ~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 86 (159)
+.|++..+|++++ |++++|+||||||||||+++|+|+++|++|+|+++| .++.. . ....++.+++++|++
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~--~~~~~~~i~~~~q~~- 75 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG-YDVVR-E--PRKVRRSIGIVPQYA- 75 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccc-C--HHHHHhhcEEecCCC-
Confidence 4577777888887 789999999999999999999999999999999987 33211 0 011345799999985
Q ss_pred CCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 87 KKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 87 ~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
.+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ ++|++++.+|+
T Consensus 76 --------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 144 (302)
T TIGR01188 76 --------SVDEDLTGRENLEMMGR--LYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD 144 (302)
T ss_pred --------CCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 46778899999876422 110011222456888999999975 45667777 33 99999999996
No 111
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-23 Score=153.43 Aligned_cols=143 Identities=13% Similarity=0.224 Sum_probs=102.2
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|.+..|+++|+ +.|+++.++++++ |++++|+||||||||||+++|+|+++|++|++.++| .++.. .......
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-~~~~~~~ 78 (237)
T PRK11614 1 MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG-KDITD-WQTAKIM 78 (237)
T ss_pred CCccEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECC-EecCC-CCHHHHH
Confidence 44456999999 9998888888888 789999999999999999999999999999999987 33211 0000112
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhc-Cccc---CCCeeEEe-Ch--
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSV-NLNV---NNPHFLIM-QG-- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~---~~~~~l~~-q~-- 147 (159)
++.+++++|++ .+++..|+.+|+.++.. +. ......+.+.++++.+ ++.. ..+..+|+ |+
T Consensus 79 ~~~i~~~~q~~---------~~~~~~tv~~~l~~~~~--~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qr 145 (237)
T PRK11614 79 REAVAIVPEGR---------RVFSRMTVEENLAMGGF--FA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQM 145 (237)
T ss_pred HhCEEEeccCc---------ccCCCCcHHHHHHHhhh--cc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHH
Confidence 45799999985 46666789888876421 11 1111234456666666 3543 45667777 33
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 146 l~la~al~~~p~ 157 (237)
T PRK11614 146 LAIGRALMSQPR 157 (237)
T ss_pred HHHHHHHHhCCC
Confidence 99999999986
No 112
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=1.9e-23 Score=153.24 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=101.7
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCCcee
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|+++|+ ++|++..++.+++ |++++|+|+||||||||+++|+|+++|+ +|+|.++| .++..........
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g-~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG-QDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECC-EEccccccchHHH
Confidence 789999 9998877888887 7899999999999999999999999988 99999887 3321100001113
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCcc----c---CCCeeEEe-
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLN----V---NNPHFLIM- 145 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~---~~~~~l~~- 145 (159)
++.+++++|++ .+++ .|+.+|+.+... ... .......+++.++++.++|. . ..+..+|+
T Consensus 81 ~~~i~~v~q~~---------~~~~-~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 148 (247)
T TIGR00972 81 RRRVGMVFQKP---------NPFP-MSIYDNIAYGPR--LHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGG 148 (247)
T ss_pred HhheEEEecCc---------ccCC-CCHHHHHHhHHH--hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHH
Confidence 46799999985 3556 788888876421 110 01122235678889999996 3 45677777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 149 ~~qrv~laral~~~p~ 164 (247)
T TIGR00972 149 QQQRLCIARALAVEPE 164 (247)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 113
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.7e-23 Score=152.65 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=103.5
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
..|+++|+ ++|++..+|++++ |++++|+|||||||||||++|+|+++|+.|++.++| .++.... ....+..
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~--~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDG-EHIQHYA--SKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECC-EEhhhCC--HHHHhhh
Confidence 36899999 9999888899988 689999999999999999999999999999999887 3331101 1112356
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECC-EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-ING-SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
++|+||++ .+++..++.+|+.++...... ... .....+++.++++.++|.. ..+..+|+ |+ +
T Consensus 83 i~~v~q~~---------~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 83 IGLLAQNA---------TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAW 153 (265)
T ss_pred eEEeeccC---------cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHH
Confidence 99999985 355567888887654211000 001 1122346788999999964 45677777 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
||++++.+|+
T Consensus 154 laral~~~p~ 163 (265)
T PRK10253 154 IAMVLAQETA 163 (265)
T ss_pred HHHHHhcCCC
Confidence 9999999986
No 114
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=7.7e-24 Score=151.06 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=108.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++++ |+|+++.+++++| +++.+++|||||||||++++|.+++.|++|.|.++| .++.+ ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g-~~~~~------~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG-GPLSQ------EIKNRI 74 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcC-cchhh------hhhhhc
Confidence 3799999 9999999999998 689999999999999999999999999999999998 44322 245689
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe--Ch--hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM--QG--RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~--q~--~ia~ 151 (159)
+|.++.. .+|+.+||.+.+.+... .....+.+.++++..||+.+++.. +....||- |+ ++-.
T Consensus 75 GyLPEER---------GLy~k~tv~dql~yla~--LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfis 143 (300)
T COG4152 75 GYLPEER---------GLYPKMTVEDQLKYLAE--LKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFIS 143 (300)
T ss_pred ccChhhh---------ccCccCcHHHHHHHHHH--hcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHH
Confidence 9999874 69999999999887533 222223445678899999999976 23345555 43 7778
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 144 aviHePe 150 (300)
T COG4152 144 AVIHEPE 150 (300)
T ss_pred HHhcCCC
Confidence 8888886
No 115
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.86 E-value=8.2e-23 Score=145.67 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=101.1
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++.+++ +++++|+|+||||||||+++|+|+++|++|++.+++ .++.. . ....++.++
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~-~--~~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG-GPLDF-Q--RDSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-Eeccc-c--cHHhhhheE
Confidence 478899 8998888888887 789999999999999999999999999999999887 33211 1 112356799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++..|+.+|+.+... . ...+++.++++.+++.. ..+..+|+ |+ ++|++
T Consensus 77 ~~~q~~---------~~~~~~tv~e~l~~~~~--~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 139 (201)
T cd03231 77 YLGHAP---------GIKTTLSVLENLRFWHA--D------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARL 139 (201)
T ss_pred Eecccc---------ccCCCcCHHHHHHhhcc--c------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHH
Confidence 999875 35566788888876421 1 13467888999999964 34567776 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 140 l~~~p~ 145 (201)
T cd03231 140 LLSGRP 145 (201)
T ss_pred HhcCCC
Confidence 999986
No 116
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.86 E-value=3.8e-23 Score=165.52 Aligned_cols=137 Identities=13% Similarity=0.141 Sum_probs=104.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..+|++++ |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .......+..+
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG-NPCAR-LTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCC-CCHHHHHhCCE
Confidence 5899999 9999888899888 789999999999999999999999999999998877 22210 00001123469
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|++|++ .+++.+|+.+|+.++.. ......+++.++++.++|.. ..+..||+ |+ +||+
T Consensus 89 ~~v~q~~---------~~~~~~tv~e~l~~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 153 (510)
T PRK15439 89 YLVPQEP---------LLFPNLSVKENILFGLP------KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR 153 (510)
T ss_pred EEEeccC---------ccCCCCcHHHHhhcccc------cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHH
Confidence 9999985 46777899999877532 11223467888999999975 45667777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 154 aL~~~p~ 160 (510)
T PRK15439 154 GLMRDSR 160 (510)
T ss_pred HHHcCCC
Confidence 9999986
No 117
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=2.8e-23 Score=151.89 Aligned_cols=143 Identities=17% Similarity=0.246 Sum_probs=103.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++.+++ +++++|+|||||||||||++|+|+++|++|++.+++ .++.. .......+..+
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG-TDLTG-LPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-eecCC-CCHHHHHhcCe
Confidence 3789999 9998878888888 689999999999999999999999999999999988 33211 01011123569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE----EECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY----MING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG- 147 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~----~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~- 147 (159)
++++|++ .+++.+|+.+|+.+...... ...+ .....+++.++++.+++.. ..+..+|+ |.
T Consensus 80 ~~~~q~~---------~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q 150 (242)
T TIGR03411 80 GRKFQKP---------TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ 150 (242)
T ss_pred eEecccc---------ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 9999985 46777899988876421000 0000 1123456788999999975 34566776 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 151 rv~laral~~~p~ 163 (242)
T TIGR03411 151 WLEIGMLLMQDPK 163 (242)
T ss_pred HHHHHHHHhcCCC
Confidence 99999999986
No 118
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=3.1e-23 Score=159.18 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=98.0
Q ss_pred Ce-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEEEEEE
Q psy17514 10 GF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKASVTLT 81 (159)
Q Consensus 10 ~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~i~~v 81 (159)
|+ ++|++..+ +++ +++++|+|||||||||||++|+|+++|++|+|.++| +++..... .....++.++++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g-~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG-RTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECccCccccccchhhCCeEEE
Confidence 67 88876543 555 789999999999999999999999999999999887 33321100 011234679999
Q ss_pred EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhc
Q psy17514 82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLN 154 (159)
Q Consensus 82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~ 154 (159)
||++ .+++++|+.+|+.++.. . .......+++.++++.++|.. ..+..+|+ |+ +|||+|+
T Consensus 81 ~q~~---------~l~~~~tv~enl~~~~~--~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 81 FQEA---------RLFPHLSVRGNLRYGMK--R--ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred ecCC---------ccCCCCcHHHHHHHHhh--c--cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9985 57888899999987532 1 111222456889999999975 46778887 33 9999999
Q ss_pred CCCC
Q psy17514 155 MKPH 158 (159)
Q Consensus 155 ~~p~ 158 (159)
.+|+
T Consensus 148 ~~p~ 151 (354)
T TIGR02142 148 SSPR 151 (354)
T ss_pred cCCC
Confidence 9986
No 119
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.86 E-value=1.8e-23 Score=154.21 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=105.9
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHH--------
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIY-------- 66 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~-------- 66 (159)
|.-..|+++|+ +.|+++.++++++ +++++|+|+||||||||+++|+|+++|++|++.+++ .++..
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~ 79 (257)
T PRK10619 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNG-QTINLVRDKDGQL 79 (257)
T ss_pred CCCccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEccccccccccc
Confidence 33456899999 9998888888887 789999999999999999999999999999999887 22210
Q ss_pred --hh-CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CC
Q psy17514 67 --KN-GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NN 139 (159)
Q Consensus 67 --~~-~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~ 139 (159)
.. ......++.++|++|++ .+++.+|+.+|+.++... +.........+++.++++.+++.. ..
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~---------~l~~~~sv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHF---------NLWSHMTVLENVMEAPIQ-VLGLSKQEARERAVKYLAKVGIDERAQGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCc---------ccCCCCcHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 00 00112356799999985 466778999998653210 110011223456788999999964 34
Q ss_pred CeeEEe-Ch---hHhHhhcCCCC
Q psy17514 140 PHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 140 ~~~l~~-q~---~ia~~l~~~p~ 158 (159)
+..+|+ |+ ++||+|+.+|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~ 172 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPE 172 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCC
Confidence 567777 33 99999999986
No 120
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=8.2e-24 Score=151.75 Aligned_cols=139 Identities=25% Similarity=0.301 Sum_probs=98.6
Q ss_pred EEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 7 VLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 7 ~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
+++|+ +.|++ ..++.+++ +++++|+||||||||||+++|+|+++|++|+|.+++ .++.. .. ....++.+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~-~~-~~~~~~~i 77 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG-KDLTK-LS-LKELRRKV 77 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEccc-CC-HHHHHhhc
Confidence 36788 88877 67888887 689999999999999999999999999999999887 33211 00 11134679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|++|++. ..++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |+ ++|+
T Consensus 78 ~~~~q~~~--------~~~~~~t~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 147 (211)
T cd03225 78 GLVFQNPD--------DQFFGPTVEEEVAFGLE--NLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAG 147 (211)
T ss_pred eEEecChh--------hhcCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 99999852 12445688888865321 100011122356788999999964 45677777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 148 al~~~p~ 154 (211)
T cd03225 148 VLAMDPD 154 (211)
T ss_pred HHhcCCC
Confidence 9999986
No 121
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.4e-24 Score=148.03 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=104.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
++++|+ |.|++..+++++| +++++|+|||||||||||.+++.+++.++|++.++| .++...+. ....+.++
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g-~~~~~~~s--~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTPS--KELAKKLS 78 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEee-eecccCCh--HHHHHHHH
Confidence 789999 9999999999998 789999999999999999999999999999999998 34432111 11234566
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+.-|.. .+...+||++-+.||.-++.+..-..++...+++.++.++|.. ++..+||+ |+ -||++
T Consensus 79 ILkQ~N---------~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMV 149 (252)
T COG4604 79 ILKQEN---------HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMV 149 (252)
T ss_pred HHHhhc---------hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhee
Confidence 666653 3455789999999875433221122344567888888888876 56778888 54 77888
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+.+
T Consensus 150 laQdTd 155 (252)
T COG4604 150 LAQDTD 155 (252)
T ss_pred eeccCc
Confidence 777643
No 122
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=3.3e-23 Score=147.99 Aligned_cols=135 Identities=11% Similarity=0.104 Sum_probs=102.5
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|+...++.+++ +++++|+||||||||||+++|+|+++|++|+|.+++ .++.. . ....++.++
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g-~~~~~-~--~~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG-EPIRR-Q--RDEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEccc-c--hHHhhhheE
Confidence 789999 9998888888888 689999999999999999999999999999999887 22211 0 011245688
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|.+ .+++.+|+.+|+.+... .. +. ...+++.++++.++|.. ..+..+|+ |+ ++|++
T Consensus 78 ~~~~~~---------~~~~~~tv~e~l~~~~~--~~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~a 143 (204)
T PRK13538 78 YLGHQP---------GIKTELTALENLRFYQR--LH--GP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARL 143 (204)
T ss_pred EeCCcc---------ccCcCCcHHHHHHHHHH--hc--Cc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHH
Confidence 998874 35667799999876532 11 11 23467888999999964 45667777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 144 l~~~p~ 149 (204)
T PRK13538 144 WLTRAP 149 (204)
T ss_pred HhcCCC
Confidence 999986
No 123
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3e-23 Score=152.83 Aligned_cols=143 Identities=14% Similarity=0.236 Sum_probs=102.8
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++.+++ |++++|+||||||||||+++|+|+++|++|++.++| .++.. .......+..+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG-QHIEG-LPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECC-EECCC-CCHHHHHhcCe
Confidence 5899999 9998888889888 789999999999999999999999999999999887 22211 00011123458
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---------EE---EC-CEEeCHHHHHHHHHhcCccc---CCCee
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---------YM---IN-GSSVNPKRVSDLFSSVNLNV---NNPHF 142 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---------~~---~~-~~~~~~~~~~~~l~~~~l~~---~~~~~ 142 (159)
+++||++ .+++.+|+.+|+.++.... +. .. ......+++.++++.++|.. ..+..
T Consensus 83 ~~~~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (255)
T PRK11300 83 VRTFQHV---------RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN 153 (255)
T ss_pred EEeccCc---------ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh
Confidence 8899985 4677789999887642100 00 00 00112246778899999865 45677
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +||++++.+|+
T Consensus 154 LS~G~~qrv~la~al~~~p~ 173 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPE 173 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 777 33 99999999996
No 124
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.86 E-value=5.8e-23 Score=151.62 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=98.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..+|++++ |++++|+||||||||||+++|+|+++|++|+|.+++ .++.. .. ....++.++
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g-~~~~~-~~-~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG-RPLAD-WS-PAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-EEccc-CC-HHHhhhheE
Confidence 789999 9998888899888 689999999999999999999999999999999887 33211 01 011245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.++... .. .......+.+.++++.++|.. ..+..+|+ |+ +||++
T Consensus 80 ~~~q~~---------~~~~~~tv~e~l~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHS---------SLSFPFTVEEVVAMGRAP-HG-LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCC---------cCCCCCCHHHHHHhhhcc-cC-CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHH
Confidence 999985 344557888888764221 10 011122356788899999964 45677777 33 99999
Q ss_pred hcC
Q psy17514 153 LNM 155 (159)
Q Consensus 153 l~~ 155 (159)
++.
T Consensus 149 l~~ 151 (258)
T PRK13548 149 LAQ 151 (258)
T ss_pred Hhc
Confidence 994
No 125
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-23 Score=154.43 Aligned_cols=141 Identities=19% Similarity=0.243 Sum_probs=102.5
Q ss_pred EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|+ +..++++++ |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ....++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~~i~~-~~-~~~~~~ 83 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISK-EN-LKEIRK 83 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EecCc-CC-HHHHhc
Confidence 5899999 9995 456888887 789999999999999999999999999999999987 33211 01 112356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.++|++|++. ..++.+|+.+|+.++.. ..........+++.++++.++|.. ..+..+|+ |+ +|
T Consensus 84 ~i~~v~q~~~--------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 84 KIGIIFQNPD--------NQFIGATVEDDIAFGLE--NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred ceEEEEeCHH--------HhcCcccHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHH
Confidence 7999999852 24556799999876421 110011112345788899999964 45677777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++++.+|+
T Consensus 154 aral~~~p~ 162 (271)
T PRK13632 154 ASVLALNPE 162 (271)
T ss_pred HHHHHcCCC
Confidence 999999985
No 126
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-23 Score=155.42 Aligned_cols=141 Identities=20% Similarity=0.256 Sum_probs=101.1
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.|+ ...++++++ |++++|+|+||||||||+++|+|+++|++|+++++| .++.. .. ....+..
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~-~~~~~~~ 79 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRG-EPITK-EN-IREVRKF 79 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCc-CC-HHHHHhh
Confidence 4899999 9995 456888887 789999999999999999999999999999999987 33211 00 1113467
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
+++++|++.. .+...|+.+|+.++.. ..........+++.++++.++|.. ..+..+|+ |+ .+|
T Consensus 80 i~~v~q~~~~--------~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 80 VGLVFQNPDD--------QIFSPTVEQDIAFGPI--NLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred eEEEecCccc--------ccccccHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH
Confidence 9999998521 1223588888865422 110111122356788999999964 45777777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++|+.+|+
T Consensus 150 raL~~~p~ 157 (277)
T PRK13652 150 GVIAMEPQ 157 (277)
T ss_pred HHHHcCCC
Confidence 99999996
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3e-23 Score=151.73 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=102.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--C--CCcee
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--G--QAGVT 74 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~--~~~~~ 74 (159)
.|+++|+ +.|+++.++.+++ +++++|+||||||||||+++|+|+..|++|+|.++| .++.... . .....
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG-NHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EecccccccchhhHHHH
Confidence 3789999 9998888899888 789999999999999999999999999999999987 3321000 0 00112
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--- 147 (159)
+..|++++|++ .+++.+|+.+|+..... ...........+++.++++.+++.. ..+..+|+ |+
T Consensus 81 ~~~i~~~~q~~---------~~~~~~tv~e~i~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 150 (242)
T PRK11124 81 RRNVGMVFQQY---------NLWPHLTVQQNLIEAPC-RVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRV 150 (242)
T ss_pred HhheEEEecCc---------cccCCCcHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 45799999985 46677899988864211 0100011122356788899999965 45677777 33
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 151 ~laral~~~p~ 161 (242)
T PRK11124 151 AIARALMMEPQ 161 (242)
T ss_pred HHHHHHhcCCC
Confidence 99999999986
No 128
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.7e-23 Score=152.63 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=102.3
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCc
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~ 72 (159)
..|+++|+ +.|++..+|++++ |++++|+|||||||||||++|+|++.| ++|+|.++| .++........
T Consensus 3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g-~~~~~~~~~~~ 81 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG-EDLYGPGVDPV 81 (258)
T ss_pred ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC-EeccccccChH
Confidence 46899999 9998878888887 789999999999999999999999874 699999987 33211000011
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc----c---CCCeeEEe
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN----V---NNPHFLIM 145 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~---~~~~~l~~ 145 (159)
..++.+++++|++ .+++.+|+.+|+.++... ..........+.+.++++.+++. . ..+..+|+
T Consensus 82 ~~~~~i~~~~q~~---------~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (258)
T PRK14241 82 AVRRTIGMVFQRP---------NPFPTMSIRDNVVAGLKL-NGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSG 151 (258)
T ss_pred HHhcceEEEcccc---------ccCCCCcHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 1356799999985 466778999998764220 10001122234677888888873 1 44567777
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 152 G~~qrv~laral~~~p~ 168 (258)
T PRK14241 152 GQQQRLCIARAIAVEPD 168 (258)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 129
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.1e-23 Score=157.44 Aligned_cols=132 Identities=14% Similarity=0.185 Sum_probs=100.1
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~ 77 (159)
|++ |+ ++|++..+ +++ +++++|+|||||||||||++|+|+++|++|+|.++| +++..... .....++.
T Consensus 2 l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g-~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNG-RVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccccccccchhhCC
Confidence 677 88 89987542 455 789999999999999999999999999999999887 33211000 01113567
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
++|+||++ .+++++|+.+|+.++.. ....+++.++++.++|.. ..+..||+ |+ +||
T Consensus 78 i~~v~q~~---------~l~~~~tv~enl~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvala 140 (352)
T PRK11144 78 IGYVFQDA---------RLFPHYKVRGNLRYGMA--------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIG 140 (352)
T ss_pred EEEEcCCc---------ccCCCCcHHHHHHhhhh--------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHH
Confidence 99999985 57888999999987532 123467889999999975 56788888 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
|+|+.+|+
T Consensus 141 raL~~~p~ 148 (352)
T PRK11144 141 RALLTAPE 148 (352)
T ss_pred HHHHcCCC
Confidence 99999986
No 130
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=9.8e-23 Score=145.14 Aligned_cols=133 Identities=12% Similarity=0.140 Sum_probs=100.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++.+++.+++ +++++|+||||||||||+++|+|+.+|++|+++++| .++.. . ....++.++
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g-~~~~~-~--~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER-QSIKK-D--LCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECC-Ccccc-C--HHHHHhheE
Confidence 789999 9998888899888 789999999999999999999999999999999987 33211 1 111346799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--C-CCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--N-NPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~-~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++..|+.+|+.++.. . .. ....+.++++.+++.. + .+..+|+ |. ++|++
T Consensus 78 ~~~q~~---------~~~~~~tv~~~~~~~~~--~---~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~lara 141 (200)
T PRK13540 78 FVGHRS---------GINPYLTLRENCLYDIH--F---SP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRL 141 (200)
T ss_pred Eecccc---------ccCcCCCHHHHHHHHHh--c---Cc--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHH
Confidence 999874 35566789998876421 1 11 2346788999998864 3 3456666 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 142 l~~~p~ 147 (200)
T PRK13540 142 WMSKAK 147 (200)
T ss_pred HhcCCC
Confidence 999996
No 131
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=6.4e-23 Score=151.37 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=102.5
Q ss_pred EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHH-----HHHhhCCC
Q psy17514 3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQE-----LIYKNGQA 71 (159)
Q Consensus 3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~-----~~~~~~~~ 71 (159)
...|+++|+ +.|+++.++.+++ |++++|+||||||||||+++|+|+++|++|+|.+++ ++ +.......
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM-RDGQLRDLYALSEAE 82 (258)
T ss_pred CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-ccccccccccCCHHH
Confidence 346999999 9998888888887 789999999999999999999999999999999887 33 21100000
Q ss_pred --ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe
Q psy17514 72 --GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM 145 (159)
Q Consensus 72 --~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~ 145 (159)
...+..++|++|++. ..+++.+++.+|+...... +.........+++.++++.+++.. ..+..+|+
T Consensus 83 ~~~~~~~~i~~v~q~~~-------~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 154 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPR-------DGLRMQVSAGGNIGERLMA-VGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSG 154 (258)
T ss_pred HHHHhhcceEEEeeCcc-------cccCccccHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCH
Confidence 002456999999862 1245556777776532110 100011122456788999999952 45677777
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ +|||+++.+|+
T Consensus 155 Gq~qrl~laral~~~p~ 171 (258)
T PRK11701 155 GMQQRLQIARNLVTHPR 171 (258)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 132
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-23 Score=156.35 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=103.6
Q ss_pred CeEEEEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhhHHHHHHhhC
Q psy17514 1 MYIKSMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANTLQELIYKNG 69 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~~~~~~~~~~ 69 (159)
|+-..|+++|+ +.|++ ..++.+++ +++++|+||||||||||+++|+|++.|+. |+|.++| .++.. .
T Consensus 1 ~~~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g-~~~~~--~ 77 (282)
T PRK13640 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTA--K 77 (282)
T ss_pred CCCceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECC-EECCc--C
Confidence 44346899999 99964 45788887 78999999999999999999999999987 8998887 33211 0
Q ss_pred CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-
Q psy17514 70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM- 145 (159)
Q Consensus 70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~- 145 (159)
.....+..++++||++. ..++..|+.+|+.+... ..........+++.++++.++|.. ..|..+|+
T Consensus 78 ~~~~~~~~ig~v~q~~~--------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G 147 (282)
T PRK13640 78 TVWDIREKVGIVFQNPD--------NQFVGATVGDDVAFGLE--NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGG 147 (282)
T ss_pred CHHHHHhheEEEEECHH--------HhhccCCHHHHHHhhHH--hCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHH
Confidence 00112457999999852 23455789999876422 110011122356788999999975 46777877
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 148 ~~qrv~laral~~~P~ 163 (282)
T PRK13640 148 QKQRVAIAGILAVEPK 163 (282)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 33 99999999996
No 133
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.7e-23 Score=155.46 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=98.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++.+++ |++++|+|||||||||||++|+|+++|++|+|.++| +++..........++.++
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG-KPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECC-EEcccccCCHHHHHhheE
Confidence 789999 9998877888887 789999999999999999999999999999999987 332100000011245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++.. .+...++.+|+.+... ..........+++.++++.+++.. ..+..+|+ |+ +||++
T Consensus 81 ~v~q~~~~--------~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 81 TVFQDPEQ--------QIFYTDIDSDIAFSLR--NLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred EEeeChhh--------ccccccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence 99998521 1222356666654321 100011112345678899999864 34567777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 151 L~~~p~ 156 (271)
T PRK13638 151 LVLQAR 156 (271)
T ss_pred HHcCCC
Confidence 999986
No 134
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.9e-23 Score=154.39 Aligned_cols=141 Identities=20% Similarity=0.241 Sum_probs=101.0
Q ss_pred EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
|+++|+ +.|+ ...+|.+++ |++++|+|||||||||||++|+|+++|++|+|+++| .++.. .......++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG-IDTGD-FSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EECCc-cccHHHHHhhe
Confidence 789999 9995 466888888 789999999999999999999999999999999987 33211 00001134679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++++|++. ..+...|+.+|+.+.... .. .......+++.++++.++|.. ..+..+|+ |+ .||+
T Consensus 80 ~~v~q~~~--------~~~~~~tv~enl~~~~~~-~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 80 GIVFQNPE--------TQFVGRTVEEDLAFGPEN-LC-LPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEEChh--------hhcccchHHHHHHhhHHH-cC-CCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 99999862 123446888888764321 10 011122356788899999965 45667777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 150 al~~~p~ 156 (274)
T PRK13644 150 ILTMEPE 156 (274)
T ss_pred HHHcCCC
Confidence 9999996
No 135
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.1e-23 Score=156.05 Aligned_cols=142 Identities=17% Similarity=0.279 Sum_probs=101.8
Q ss_pred EEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCc
Q psy17514 6 MVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAG 72 (159)
Q Consensus 6 l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~ 72 (159)
|+++|+ +.|++ ..+|++++ |++++|+||||||||||+++|+|++.|+.|+|.++| .++..... ...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD-ITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EECccccccchHH
Confidence 789999 99964 35888888 789999999999999999999999999999999987 33211000 001
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~ 147 (159)
..++.|+++||++.. .+++ .|+.+|+.++... ... ......+++.++++.++|. . ..+..+|+ |+
T Consensus 82 ~~~~~ig~v~q~~~~-------~l~~-~tv~e~i~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPES-------QLFE-DTVEREIIFGPKN-FKM-NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHh-------ccch-hhHHHHHHhhHHH-cCC-CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 235679999998531 2333 3888888765321 000 1112345678899999996 3 45778877 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 152 qrv~laraL~~~p~ 165 (286)
T PRK13646 152 RKIAIVSILAMNPD 165 (286)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999996
No 136
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9e-23 Score=151.29 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=101.0
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..+|++++ |++++|+||||||||||+++|+|+.+| ++|+|.++| .++.........
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g-~~i~~~~~~~~~ 97 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG-EDIYDPRLDVVE 97 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC-EECcccccchHH
Confidence 5899999 9998888888887 799999999999999999999999874 799999887 332110000112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC-CEEeCHHHHHHHHHhcCccc-------CCCeeEEe
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN-GSSVNPKRVSDLFSSVNLNV-------NNPHFLIM 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~ 145 (159)
.++.+++++|++ .+++. |+.+|+.++... .... ......+++.++++.++|.. ..+..+|+
T Consensus 98 ~~~~i~~v~q~~---------~~~~~-tv~enl~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 166 (267)
T PRK14235 98 LRARVGMVFQKP---------NPFPK-SIYENVAYGPRI-HGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG 166 (267)
T ss_pred HhhceEEEecCC---------CCCCC-cHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence 356799999985 34553 888888764320 0000 11122356788899999842 34667777
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 167 Gq~qrv~laral~~~p~ 183 (267)
T PRK14235 167 GQQQRLCIARAIAVSPE 183 (267)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 33 99999999986
No 137
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.8e-23 Score=155.19 Aligned_cols=140 Identities=18% Similarity=0.242 Sum_probs=100.8
Q ss_pred EEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--ceeEEEE
Q psy17514 7 VLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA--GVTKASV 78 (159)
Q Consensus 7 ~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~~~i 78 (159)
.++|+ +.|++..++.+++ +++++|+||||||||||+++|+|+++|++|+|.++| .++....... ...+..+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g-~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDG-QDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEccccChhhhhhhhcCcE
Confidence 45677 8888888888887 789999999999999999999999999999999887 3321100000 0113579
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++++|++ .+++.+|+.+|+.++.. ..........+++.++++.++|.. ..+..+|+ |+ +||+
T Consensus 105 ~~v~q~~---------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 105 SMVFQSF---------ALLPHRTVLENVAFGLE--VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR 173 (269)
T ss_pred EEEecCc---------ccCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 9999985 46667899999876421 110011222356788999999964 45677777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 174 al~~~p~ 180 (269)
T cd03294 174 ALAVDPD 180 (269)
T ss_pred HHhcCCC
Confidence 9999986
No 138
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3e-23 Score=153.95 Aligned_cols=145 Identities=18% Similarity=0.242 Sum_probs=101.8
Q ss_pred CeEEEEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCc
Q psy17514 1 MYIKSMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~ 72 (159)
|+...|+++|+ +.|++ ..++.+++ +++++|+||||||||||+++|+|+++|++|+|+++| .++.. .. ..
T Consensus 3 ~~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~~~~-~~-~~ 79 (269)
T PRK13648 3 DKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNN-QAITD-DN-FE 79 (269)
T ss_pred CCCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCc-CC-HH
Confidence 33446999999 99975 34788877 789999999999999999999999999999999987 33211 00 01
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG- 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~- 147 (159)
..++.+++++|++. .+++..++.+|+.++.. ..........+++.++++.+++.. ..+..+|+ |+
T Consensus 80 ~~~~~i~~v~q~~~--------~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 149 (269)
T PRK13648 80 KLRKHIGIVFQNPD--------NQFVGSIVKYDVAFGLE--NHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQ 149 (269)
T ss_pred HHHhheeEEEeChH--------HhcccccHHHHHHhhHH--hcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHH
Confidence 13457999999852 23444567777665421 100011122346778899999864 45667777 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 150 rl~laral~~~p~ 162 (269)
T PRK13648 150 RVAIAGVLALNPS 162 (269)
T ss_pred HHHHHHHHHcCCC
Confidence 99999999986
No 139
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.85 E-value=9.9e-23 Score=150.66 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=103.6
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhh---CCCc
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKN---GQAG 72 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~---~~~~ 72 (159)
.|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|++.|+ +|+|.++| .++.... ....
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g-~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLG-RTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECC-EecccccccchhHH
Confidence 5899999 9998888899888 7899999999999999999999999876 48999888 3321100 0001
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC----C--EEeCHHHHHHHHHhcCccc---CCCeeE
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN----G--SSVNPKRVSDLFSSVNLNV---NNPHFL 143 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~----~--~~~~~~~~~~~l~~~~l~~---~~~~~l 143 (159)
..++.++++||++ .+++.+|+.+|+.++........ + .....+++.++++.+++.. ..+..+
T Consensus 83 ~~~~~i~~~~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 83 KSRANTGYIFQQF---------NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred HHHhheEEEcccc---------ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 1245799999985 45677899888876421100000 0 1122456888999999964 456777
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ ++|++++.+|+
T Consensus 154 S~G~~qrv~laral~~~p~ 172 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAK 172 (262)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 77 33 99999999986
No 140
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.85 E-value=7.5e-23 Score=145.52 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=100.7
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+++|++|++.+++ .++... . ...++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~-~--~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG-TALAEQ-R--DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC-EEcccc-h--HHhhhheE
Confidence 468899 8998888888887 789999999999999999999999999999999887 332111 1 11345789
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|.+ .+++.+|+.+|+.+... .. .. ..+.+.++++.+++.. ..+..+|+ |+ ++|++
T Consensus 77 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 77 YLGHLP---------GLKPELSALENLHFWAA--IH--GG--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARL 141 (198)
T ss_pred EeccCc---------ccccCCcHHHHHHHHHH--Hc--CC--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHH
Confidence 999874 35666789888865421 11 11 1356788999999975 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 142 l~~~p~ 147 (198)
T TIGR01189 142 WLSRAP 147 (198)
T ss_pred HhcCCC
Confidence 999986
No 141
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.6e-23 Score=154.92 Aligned_cols=142 Identities=17% Similarity=0.250 Sum_probs=101.6
Q ss_pred EEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCc
Q psy17514 6 MVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAG 72 (159)
Q Consensus 6 l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~ 72 (159)
|+++|+ +.|+.. .+|++++ |++++|+||||||||||+++|+|++.|++|+++++| .++.... ....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD-IVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC-EECccccccccHH
Confidence 789999 999632 4788888 789999999999999999999999999999999988 3321100 0011
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~ 147 (159)
..++.++++||++.. .+++ .||.+|+.++... +.. ......+++.++++.++|.. ..+..+|+ |+
T Consensus 81 ~~~~~ig~v~q~~~~-------~l~~-~tv~~~l~~~~~~-~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPES-------QLFE-ETVLKDVAFGPQN-FGI-PKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcch-------hccc-chHHHHHHhHHHH-cCC-CHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHH
Confidence 135679999998632 2343 4888988765321 111 11223456888999999952 45677777 43
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 151 qrvaiA~aL~~~p~ 164 (288)
T PRK13643 151 RRVAIAGILAMEPE 164 (288)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999996
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.85 E-value=9.3e-23 Score=150.00 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=102.6
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh-------C---
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN-------G--- 69 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~-------~--- 69 (159)
|+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|++.|++|++.++| .++.... +
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG-EQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccccccccccccch
Confidence 478899 8998888888888 789999999999999999999999999999998887 3321100 0
Q ss_pred -CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe
Q psy17514 70 -QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM 145 (159)
Q Consensus 70 -~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~ 145 (159)
.....++.+++++|++ .+++..|+.+|+.++....... ......+++.++++.+++.. ..+..+|+
T Consensus 80 ~~~~~~~~~i~~v~q~~---------~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 149 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSF---------NLFPHKTVLDNVTEAPVLVLGM-ARAEAEKRAMELLDMVGLADKADHMPAQLSG 149 (252)
T ss_pred hHHHHHhhCeEEEecCc---------ccCCCCcHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhHhhcChhhcCH
Confidence 0011246799999985 4677789999887632100000 11122356788999999965 45677777
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 150 G~~qrv~laral~~~p~ 166 (252)
T TIGR03005 150 GQQQRVAIARALAMRPK 166 (252)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 33 99999999986
No 143
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-22 Score=149.63 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=100.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ |++++|+|+||||||||+++|+|++.| ++|+|+++| .++.........
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~ 85 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG-KNIYSNNFDILE 85 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC-EecccccccHHH
Confidence 5899999 9998878888888 789999999999999999999999987 489999887 332110001112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.|+|++|++ .+++ .|+.+|+.++... ..........+++.++++.+++. ...+..+|+
T Consensus 86 ~~~~i~~v~q~~---------~~~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 154 (254)
T PRK14273 86 LRRKIGMVFQTP---------NPFL-MSIYDNISYGPKI-HGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG 154 (254)
T ss_pred HhhceEEEeecc---------cccc-CcHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence 356799999985 2443 6899998765321 11011112235677888888872 145677777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +|||+++.+|+
T Consensus 155 ~~qrv~laral~~~p~ 170 (254)
T PRK14273 155 QQQRLCIARTLAIEPN 170 (254)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 33 99999999986
No 144
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-22 Score=149.74 Aligned_cols=142 Identities=14% Similarity=0.200 Sum_probs=100.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..+|++++ |++++|+||||||||||+++|+|++. |++|+|.++| .++.........
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g-~~~~~~~~~~~~ 91 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDG-ENILTPKQDIAL 91 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECC-EEccccccchHH
Confidence 6899999 9998878888887 78999999999999999999999986 4789999887 332110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.++++||++ .+++ .|+.+|+.+... ...........+++.++++.+++. ...+..+|+
T Consensus 92 ~~~~i~~~~q~~---------~~~~-~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 92 LRAKVGMVFQKP---------TPFP-MSIYDNIAFGVR-LFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred HhcceEEEecCC---------ccCc-CcHHHHHhhhHh-hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHH
Confidence 356799999985 3455 688888876421 010001112235678889998873 145667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|. +||++++.+|+
T Consensus 161 q~qrv~laral~~~p~ 176 (260)
T PRK10744 161 QQQRLCIARGIAIRPE 176 (260)
T ss_pred HHHHHHHHHHHHCCCC
Confidence 33 99999999986
No 145
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.7e-23 Score=157.46 Aligned_cols=146 Identities=17% Similarity=0.244 Sum_probs=101.6
Q ss_pred EEEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC----CcccchhhhhHHHHHHhhCC
Q psy17514 5 SMVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG----IQVKQVRANTLQELIYKNGQ 70 (159)
Q Consensus 5 ~l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~----~~~g~i~~~~~~~~~~~~~~ 70 (159)
.|+++|+ +.|. ...+++++| |++++|+|+||||||||+++|+|+++ +++|+|+++| .++......
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g-~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDD-IDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECC-EECCcCCHH
Confidence 4899999 9993 356888888 78999999999999999999999986 4789999887 332110000
Q ss_pred --CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-EE---ECCEEeCHHHHHHHHHhcCccc------C
Q psy17514 71 --AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-YM---INGSSVNPKRVSDLFSSVNLNV------N 138 (159)
Q Consensus 71 --~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-~~---~~~~~~~~~~~~~~l~~~~l~~------~ 138 (159)
....++.|+++||++.. .+++.+||.+++....... +. ........+++.++++.++|.. .
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~-------~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQS-------CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred HHHHHhCCCEEEEecCcch-------hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 01123579999999631 2556678877775421100 00 0011122457889999999963 5
Q ss_pred CCeeEEe-C--h-hHhHhhcCCCC
Q psy17514 139 NPHFLIM-Q--G-RVTKVLNMKPH 158 (159)
Q Consensus 139 ~~~~l~~-q--~-~ia~~l~~~p~ 158 (159)
+|..||+ | + +||++|+.+|+
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCC
Confidence 6888888 3 3 99999999996
No 146
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.9e-23 Score=154.66 Aligned_cols=143 Identities=14% Similarity=0.243 Sum_probs=101.3
Q ss_pred EEEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCC
Q psy17514 5 SMVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQA 71 (159)
Q Consensus 5 ~l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~ 71 (159)
.|+++|+ +.|++ +.++++++ |++++|+|||||||||||++|+|+++|++|+|.++| +++.... ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAG-YHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EECccccccchH
Confidence 4789999 99973 35788887 799999999999999999999999999999999988 3321100 000
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-C
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-Q 146 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q 146 (159)
...+..|++++|++.. .++ .+|+.+|+.++... ... ......+++.++++.++|. . ..+..+|+ |
T Consensus 81 ~~~~~~ig~v~q~~~~-------~~~-~~tv~e~l~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq 150 (287)
T PRK13641 81 KKLRKKVSLVFQFPEA-------QLF-ENTVLKDVEFGPKN-FGF-SEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQ 150 (287)
T ss_pred HHHHhceEEEEeChhh-------hhc-cchHHHHHHHHHHH-cCC-CHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHH
Confidence 1134579999998521 133 46888988754220 100 1122235678899999996 2 45677777 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ +||++++.+|+
T Consensus 151 ~qrl~laral~~~p~ 165 (287)
T PRK13641 151 MRRVAIAGVMAYEPE 165 (287)
T ss_pred HHHHHHHHHHHcCCC
Confidence 3 99999999996
No 147
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=1.2e-22 Score=145.96 Aligned_cols=135 Identities=20% Similarity=0.227 Sum_probs=98.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
++++|+ +.|+.. +.+++ +++++|+||||||||||+++|+|+++|++|+|.+++ .++.. ....++.++
T Consensus 1 ~~~~~l~~~~~~~--~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~----~~~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEHL--PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVND-QSHTG----LAPYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCCc--ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEccc----CChhccceE
Confidence 468889 888642 34555 799999999999999999999999999999999987 33211 111346799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.++..... .......+++.++++.++|.. ..+..+|+ |+ +||++
T Consensus 74 ~v~q~~---------~~~~~~t~~en~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQEN---------NLFAHLTVRQNIGLGLHPGL--KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccC---------ccCCCCcHHHHHHhHhhccC--CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHH
Confidence 999986 46677899999875422111 111123456788999999964 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 143 l~~~p~ 148 (213)
T TIGR01277 143 LVRPNP 148 (213)
T ss_pred HhcCCC
Confidence 999985
No 148
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.4e-23 Score=152.39 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=101.5
Q ss_pred EEEEeCe-eeecC------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCc
Q psy17514 5 SMVLDGF-KSYGT------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 5 ~l~l~~~-~~~~~------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~ 72 (159)
.|+++|+ ++|++ +.+|.+++ |++++|+|+||||||||+++|+|++.|++|+|+++| .++.. .....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g-~~i~~-~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG-LDTSD-EENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-Eeccc-cccHH
Confidence 5899999 99963 46888888 689999999999999999999999999999999987 33211 00001
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG- 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~- 147 (159)
..++.++++||++.. .++ ..++.+|+.++... ... ......+++.++++.++|.. ..+..+|+ |+
T Consensus 82 ~~~~~i~~v~q~~~~-------~~~-~~~v~~~l~~~~~~-~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q 151 (280)
T PRK13633 82 DIRNKAGMVFQNPDN-------QIV-ATIVEEDVAFGPEN-LGI-PPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQ 151 (280)
T ss_pred HHhhheEEEecChhh-------hhc-cccHHHHHHhhHhh-cCC-CHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence 135679999998631 122 24677777664220 100 11222456788999999965 46778877 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 152 rv~laral~~~p~ 164 (280)
T PRK13633 152 RVAIAGILAMRPE 164 (280)
T ss_pred HHHHHHHHHcCCC
Confidence 99999999996
No 149
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.4e-23 Score=154.76 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=102.6
Q ss_pred EEEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh------
Q psy17514 5 SMVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK------ 67 (159)
Q Consensus 5 ~l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~------ 67 (159)
.|+++|+ +.|++ ..+|++++ |++++|+|+||||||||+++|+|++.|++|+|+++| .++...
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g-~~~~~~~~~~~~ 99 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGD-IYIGDKKNNHEL 99 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-EEcccccccccc
Confidence 5899999 99964 35888888 789999999999999999999999999999999887 222100
Q ss_pred ------h--CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c-
Q psy17514 68 ------N--GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V- 137 (159)
Q Consensus 68 ------~--~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~- 137 (159)
. ......++.|+++||++.. .+++ .|+.+|+.++.. ..........+++.++++.++|. .
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~-------~l~~-~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEY-------QLFK-DTIEKDIMFGPV--ALGVKKSEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchh-------cccc-chHHHHHHhhHH--hcCCCHHHHHHHHHHHHHHcCCChhH
Confidence 0 0011235689999998631 2444 488999876532 11001112245678899999995 2
Q ss_pred --CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 138 --NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 138 --~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
..+..+|+ |+ +|||+|+.+|+
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~ 196 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPE 196 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46778888 33 99999999996
No 150
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.1e-22 Score=149.62 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=100.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++++++ |++++|+|||||||||||++|+|+.. |++|+|.++| +++.........
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG-ENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC-EEccccccCHHH
Confidence 5899999 9998878888888 78999999999999999999999974 5789999887 332110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.++.+++++|++ .+++ .|+.+|+.++... ..........+++.++++.+++.. ..+..+|+
T Consensus 85 ~~~~i~~v~q~~---------~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 153 (253)
T PRK14242 85 LRRRVGMVFQKP---------NPFP-KSIFENVAYGLRV-NGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 (253)
T ss_pred HhhcEEEEecCC---------CCCc-CcHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 356799999985 3555 4889998764220 101111122456778889888831 34667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 154 q~qrv~laral~~~p~ 169 (253)
T PRK14242 154 QQQRLCIARALAVEPE 169 (253)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999985
No 151
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.1e-22 Score=148.11 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=101.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--C---cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--I---QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~---~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++++++ |++++|+|+||||||||+++|+|+++ | ++|+++++| .++.........
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g-~~i~~~~~~~~~ 82 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD-TDIYDRGVDPVS 82 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC-EEcccccCChHH
Confidence 5899999 9998888899888 78999999999999999999999986 3 589999987 332110101112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.++.+++++|++ .+++..|+.+|+.++... ..........+++.++++.+++.. ..+..+|+
T Consensus 83 ~~~~i~~~~q~~---------~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (252)
T PRK14256 83 IRRRVGMVFQKP---------NPFPAMSIYDNVIAGYKL-NGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGG 152 (252)
T ss_pred hhccEEEEecCC---------CCCCcCcHHHHHHhHHHh-cCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHH
Confidence 356799999985 466777899988754220 000011122356778888888742 34567777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 153 ~~qrl~laral~~~p~ 168 (252)
T PRK14256 153 QQQRLCIARTIAVKPE 168 (252)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 152
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.8e-23 Score=163.49 Aligned_cols=143 Identities=15% Similarity=0.258 Sum_probs=104.8
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|+++|++|+|++++ .++.. .......++.|
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~~i~~-~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG-QEMRF-ASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-EECCC-CCHHHHHhCCE
Confidence 4899999 9998888899888 689999999999999999999999999999999877 23210 00001124579
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-INGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
++++|++ .+++.+|+.+|+.++...... ........+++.++++.++|.. ..+..||+ |+ +||
T Consensus 82 ~~v~q~~---------~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 82 AIIYQEL---------HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred EEEEech---------hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 9999985 466778999998775321110 0011122356788999999964 45677877 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 153 ral~~~p~ 160 (501)
T PRK11288 153 KALARNAR 160 (501)
T ss_pred HHHHhCCC
Confidence 99999986
No 153
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.85 E-value=1.9e-22 Score=145.87 Aligned_cols=131 Identities=14% Similarity=0.270 Sum_probs=99.8
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++.+++ +++++|+|||||||||||++|+|+++|++|++.+++ .++. . . ..+.++
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~-~~~~---~-~--~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-HPWT---R-K--DLHKIG 73 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-Eecc---c-c--ccccEE
Confidence 478899 8898878888887 789999999999999999999999999999999887 2221 1 1 124789
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++..|+.+|+.+... .. + ...+++.++++.++|.. ..+..+|+ |+ ++|++
T Consensus 74 ~~~q~~---------~~~~~~t~~~~~~~~~~--~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 74 SLIESP---------PLYENLTARENLKVHTT--LL--G--LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIA 138 (223)
T ss_pred EEcCCC---------CccccCCHHHHHHHHHH--Hc--C--CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHH
Confidence 999875 35666788888865321 11 1 12467888999999975 34667776 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 139 l~~~p~ 144 (223)
T TIGR03740 139 LLNHPK 144 (223)
T ss_pred HhcCCC
Confidence 999986
No 154
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.85 E-value=8.9e-23 Score=150.45 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=101.4
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..+|++++ |++++|+||||||||||+++|+|+++|++|++.+++ .++.. .. ....++.++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~-~~-~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAG-VDLHG-LS-RRARARRVA 78 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECC-EEccc-CC-HHHHhhheE
Confidence 678999 9998888899888 789999999999999999999999999999999887 23211 00 011234689
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
|++|++ .+++.+|+.+|+.++.... ..........+++.++++.+++.. ..+..+|+ |+ ++|
T Consensus 79 ~~~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDS---------DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVA 149 (256)
T ss_pred EecccC---------ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 999985 2445568888887642110 110111122346788999999864 45667777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 150 ~al~~~p~ 157 (256)
T TIGR03873 150 RALAQEPK 157 (256)
T ss_pred HHHhcCCC
Confidence 99999985
No 155
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=2.5e-23 Score=141.05 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=104.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
+++.++ ..-.+..+|+++| ||+.+|+||||||||||+++++.+..|++|.+.+.| +++...+. ...|.+|+
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~G-e~vs~~~p--ea~Rq~Vs 80 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG-EDVSTLKP--EAYRQQVS 80 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcC-ccccccCh--HHHHHHHH
Confidence 556666 4446677888887 799999999999999999999999999999999999 55533222 22467899
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe---Ch-hHhH
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM---QG-RVTK 151 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~---q~-~ia~ 151 (159)
|+-|.| .+|++ ||++|+.|+ +++.+.+.+.+.+.++++.+++.+ .+...+|+ |+ +++|
T Consensus 81 Y~~Q~p---------aLfg~-tVeDNlifP----~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR 146 (223)
T COG4619 81 YCAQTP---------ALFGD-TVEDNLIFP----WQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIR 146 (223)
T ss_pred HHHcCc---------ccccc-chhhccccc----hHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHH
Confidence 999987 46664 999999998 334444456788899999999986 34566776 33 7788
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
-|.-.|+
T Consensus 147 ~Lq~~P~ 153 (223)
T COG4619 147 NLQFMPK 153 (223)
T ss_pred HhhcCCc
Confidence 7777665
No 156
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.2e-22 Score=146.40 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=98.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++.. .+++ |++++|+||||||||||+++|+|++.|++|++.+++ +++.. . ...++.++
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~---~~~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG-QDHTT-T---PPSRRPVS 74 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-eecCc-C---ChhhccEE
Confidence 789999 9997643 2454 789999999999999999999999999999999987 33211 0 11235799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.++... .........+++.++++.++|.. ..+..+|+ |+ ++|++
T Consensus 75 ~~~q~~---------~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQEN---------NLFSHLTVAQNIGLGLNP--GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEeccc---------ccccCCcHHHHHhccccc--ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHH
Confidence 999985 466778999988764211 00111123456888999999965 45677777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 144 l~~~p~ 149 (232)
T PRK10771 144 LVREQP 149 (232)
T ss_pred HhcCCC
Confidence 999985
No 157
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.8e-22 Score=147.96 Aligned_cols=140 Identities=20% Similarity=0.227 Sum_probs=100.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC---CcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG---IQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
++++|+ +.|++..+|++++ +++++|+||||||||||+++|+|++. |++|+|.++| +++.... ....++
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g-~~i~~~~--~~~~~~ 79 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG-KDVKNQD--VVALRK 79 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECC-EecccCC--HHHHhh
Confidence 689999 9998878888887 78999999999999999999999974 6899999887 3332111 112356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-Ch-
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-QG- 147 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-q~- 147 (159)
.++|++|++ .+++ .|+.+|+.++....-..........++.++++.+++.. ..+..+|+ |+
T Consensus 80 ~i~~~~q~~---------~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 149 (246)
T PRK14269 80 NVGMVFQQP---------NVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQ 149 (246)
T ss_pred hEEEEecCC---------cccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHH
Confidence 799999985 3555 58999987652210000011122346778899999841 34567777 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
++||+++.+|+
T Consensus 150 rv~laral~~~p~ 162 (246)
T PRK14269 150 RLCIARALAIKPK 162 (246)
T ss_pred HHHHHHHHhcCCC
Confidence 99999999986
No 158
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.84 E-value=2.8e-23 Score=160.04 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=98.6
Q ss_pred eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH---HHHHhhCC--CceeEEEEEEE
Q psy17514 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ---ELIYKNGQ--AGVTKASVTLT 81 (159)
Q Consensus 12 ~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~---~~~~~~~~--~~~~~~~i~~v 81 (159)
+.|+...++.++| +++++|+|+||||||||+++|+|++.|++|+|.++|.. ++...... ....++.++|+
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 5566666777777 78999999999999999999999999999999998721 21110000 01123579999
Q ss_pred EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhc
Q psy17514 82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLN 154 (159)
Q Consensus 82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~ 154 (159)
||++ .+++++|+.+|+.++.. +.........+++.++++.++|.. .++.++|+ |+ .|||+|+
T Consensus 112 fQ~~---------~l~p~~Tv~eNi~~~~~--~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa 180 (382)
T TIGR03415 112 FQKF---------ALMPWLTVEENVAFGLE--MQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFA 180 (382)
T ss_pred ECCC---------cCCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9985 57888999999987632 110112223457788999999975 46778888 33 9999999
Q ss_pred CCCC
Q psy17514 155 MKPH 158 (159)
Q Consensus 155 ~~p~ 158 (159)
.+|+
T Consensus 181 ~~P~ 184 (382)
T TIGR03415 181 MDAD 184 (382)
T ss_pred cCCC
Confidence 9996
No 159
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.84 E-value=8.4e-23 Score=148.04 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=99.1
Q ss_pred EEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-Ccee
Q psy17514 6 MVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~ 74 (159)
|+++|+ +.|++. .++.+++ |++++|+|||||||||||++|+|+++|++|++.++| .++...... ....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~ 80 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG-KDLLKLSRRLRKIR 80 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEccccchhhHHHh
Confidence 688999 999765 6888888 789999999999999999999999999999999887 332110100 0123
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHH-HHHHHHhcCcc-c---CCCeeEEe-Ch-
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKR-VSDLFSSVNLN-V---NNPHFLIM-QG- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~-~---~~~~~l~~-q~- 147 (159)
++.+++++|++. ..+++.+|+.+|+.++... ..........+. +.++++.+++. . ..+..+|+ |+
T Consensus 81 ~~~i~~~~q~~~-------~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 152 (228)
T cd03257 81 RKEIQMVFQDPM-------SSLNPRMTIGEQIAEPLRI-HGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQ 152 (228)
T ss_pred hccEEEEecCch-------hhcCCcCCHHHHHHHHHHh-ccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHH
Confidence 567999999852 1244567888888653210 100001111122 24788899984 2 45677777 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 153 rv~laral~~~p~ 165 (228)
T cd03257 153 RVAIARALALNPK 165 (228)
T ss_pred HHHHHHHHhcCCC
Confidence 99999999986
No 160
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.5e-23 Score=156.19 Aligned_cols=145 Identities=18% Similarity=0.213 Sum_probs=101.8
Q ss_pred EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC----cccchhhhhHHHHHHhhC-
Q psy17514 5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI----QVKQVRANTLQELIYKNG- 69 (159)
Q Consensus 5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~----~~g~i~~~~~~~~~~~~~- 69 (159)
.|+++|+ +.|+. ..+|+++| |++++|+|+||||||||+++|+|++++ ++|+|.++| +++.....
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G-~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNG-QDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECC-EECCcCCHH
Confidence 3899999 99976 46899988 789999999999999999999999973 789999987 33311000
Q ss_pred -CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCCee
Q psy17514 70 -QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNPHF 142 (159)
Q Consensus 70 -~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~ 142 (159)
.....++.|+++||++.. .+++.+++.+++...... ..........+++.++++.++|.. .+|.+
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~-------~l~p~~~v~~~i~~~l~~-~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~ 153 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMT-------SLNPCYTVGFQIMEAIKV-HQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ 153 (326)
T ss_pred HHHHHhCCCEEEEecCchh-------hcCCcCCHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchh
Confidence 001123469999998631 356666776655432210 000012223467889999999963 47888
Q ss_pred EEe-C--h-hHhHhhcCCCC
Q psy17514 143 LIM-Q--G-RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q--~-~ia~~l~~~p~ 158 (159)
||+ | + +||++|+.+|+
T Consensus 154 LSgGq~QRv~iArAL~~~P~ 173 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPK 173 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 988 3 3 99999999996
No 161
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2e-22 Score=148.19 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=100.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ |++++|+|+||||||||+++|+|+..| ++|+|.++| .++.........
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG-KNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC-EecccccccHHH
Confidence 4789999 9998878888887 799999999999999999999999875 789999987 333210010111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.+++++|++ .+++ .|+.+|+.+.... ..........+++.++++.+++. ...+..+|+
T Consensus 83 ~~~~i~~~~q~~---------~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 83 LRKRVGMVFQKP---------NPFP-MSIYDNVAYGPRI-HGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred HHhheEEEecCC---------CcCC-CcHHHHHHhHHHh-cCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 356799999985 3455 6899998764220 10001112234567888888873 145667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 152 ~~qrv~laral~~~p~ 167 (251)
T PRK14270 152 QQQRLCIARTIAVKPD 167 (251)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999885
No 162
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=1.7e-19 Score=131.92 Aligned_cols=129 Identities=30% Similarity=0.527 Sum_probs=91.2
Q ss_pred EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEE
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTF 82 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~ 82 (159)
+.+|+++|||+|++..++.++++++++|+||||||||||+++|++++....+..+.....+++..+.......+.|.++|
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~ 80 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIF 80 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEE
Confidence 35799999999999888889999999999999999999999999998766544554423355443332233567889999
Q ss_pred EcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc
Q psy17514 83 DNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN 136 (159)
Q Consensus 83 q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 136 (159)
++++..... ..++.++.+.+..... .+.+++.....+++...++.+++.
T Consensus 81 ~~~~~~~~~----~~~~~~i~r~ig~~~~-~~~l~~~~~t~~ei~~~l~~~gl~ 129 (243)
T cd03272 81 DNSDNRFPI----DKEEVRLRRTIGLKKD-EYFLDKKNVTKNDVMNLLESAGFS 129 (243)
T ss_pred EcCCCccCC----CCCEEEEEEEEECCCC-EEEECCeEcCHHHHHHHHHHcCCC
Confidence 876432100 1134577777765433 456667666667788888877764
No 163
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.2e-23 Score=155.89 Aligned_cols=145 Identities=14% Similarity=0.213 Sum_probs=103.8
Q ss_pred EEEEeCe-eeecC----------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh
Q psy17514 5 SMVLDGF-KSYGT----------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN 68 (159)
Q Consensus 5 ~l~l~~~-~~~~~----------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~ 68 (159)
.|+++|+ +.|.. ..++++++ |++++|+|+||||||||+++|+|++.|++|+|.++| .++....
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g-~~l~~~~ 83 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKAD 83 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECC-EEcCcCC
Confidence 4899999 99952 46788887 799999999999999999999999999999999987 3332100
Q ss_pred C-CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeE
Q psy17514 69 G-QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFL 143 (159)
Q Consensus 69 ~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l 143 (159)
. .....++.|+++||++.. .+++.+++.+++..+....... ......+++.++++.++|.. .+|..|
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~-------~l~p~~~v~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~p~~L 155 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYG-------SLNPRKKVGQILEEPLLINTSL-SAAERREKALAMMAKVGLRPEHYDRYPHMF 155 (327)
T ss_pred HHHHHHHhCCEEEEEcCchh-------hcCCccCHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHCCCChHHhcCCCccC
Confidence 0 001124579999999632 3566678877765432100001 12223467889999999953 578888
Q ss_pred Ee-C--h-hHhHhhcCCCC
Q psy17514 144 IM-Q--G-RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q--~-~ia~~l~~~p~ 158 (159)
|+ | + +||++|+.+|+
T Consensus 156 SgGq~QRv~iArAL~~~P~ 174 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPD 174 (327)
T ss_pred CHHHHHHHHHHHHHHcCCC
Confidence 88 3 3 99999999996
No 164
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.84 E-value=7.1e-23 Score=147.84 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=102.5
Q ss_pred EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC-Ccee
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ-AGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~ 74 (159)
|+++|+ +.|++ ..++++++ |++++|+|+||||||||+++|+|+++|++|+|.++| .++...... ....
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLG-QELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEhHhcCHhHHHHH
Confidence 678899 88864 56888887 789999999999999999999999999999999887 333211110 0113
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--- 147 (159)
++.+++++|++ .+++++|+.+|+.+.... ..........+.+.++++.++|.. ..+..+|+ |+
T Consensus 81 ~~~i~~~~q~~---------~~~~~~t~~~n~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 81 RRNIGYIFQAH---------NLLGFLTARQNVQMALEL-QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred HhheEEEcCCh---------hhcCCCCHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH
Confidence 56799999985 466667888888764220 100011122356788999999965 45677777 33
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 151 ~laral~~~p~ 161 (220)
T TIGR02982 151 AIARALVHRPK 161 (220)
T ss_pred HHHHHHhcCCC
Confidence 99999999986
No 165
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=7.7e-23 Score=152.24 Aligned_cols=142 Identities=20% Similarity=0.268 Sum_probs=100.3
Q ss_pred EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
|+++|+ +.|+ ...++.+++ |++++|+||||||||||+++|+|+++|++|+|+++| .++..........++.|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKG-EPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC-EECccccchHHHHHhhe
Confidence 789999 9996 456888887 789999999999999999999999999999999987 33210000001135679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++++|++.. .++ ..|+.+|+.++... .. .......+++.++++.++|.. ..+..+|+ |+ ++|+
T Consensus 81 ~~v~q~~~~-------~~~-~~tv~e~i~~~~~~-~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 81 GIVFQNPDD-------QLF-APTVEEDVAFGPLN-LG-LSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred EEEeeChhh-------hhc-cccHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHH
Confidence 999998521 123 35888888654210 10 011122356788999999964 45677777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 151 al~~~p~ 157 (275)
T PRK13639 151 ILAMKPE 157 (275)
T ss_pred HHhcCCC
Confidence 9999986
No 166
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.8e-22 Score=148.26 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=99.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ |++++|+||||||||||+++|+|+++| ++|++.++| .++.........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g-~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG-QDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC-EEcccchhhHHH
Confidence 4899999 9998888888887 689999999999999999999999874 789999887 232110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.++.+++++|++ .+++ .|+.+|+.+... ...........+.+.++++.+++.. ..+..+|+
T Consensus 82 ~~~~i~~~~q~~---------~~~~-~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 82 YRKKVGMVFQKP---------TPFP-MSIYDNVAFGPR-IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred hhhhEEEEecCC---------ccCc-ccHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 356799999985 3455 688888876421 0100111112345677888888742 35567777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|. ++|++++.+|+
T Consensus 151 q~qr~~la~al~~~p~ 166 (250)
T PRK14262 151 QQQRLCIARALAVEPE 166 (250)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 33 99999999986
No 167
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=4.6e-22 Score=159.99 Aligned_cols=132 Identities=13% Similarity=0.112 Sum_probs=102.4
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ .+|++ ..+|+++| |+.++|+||||||||||+++|+|+++|++|+|.++| .++... . ...++.
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g-~~i~~~-~--~~lr~~ 409 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG-VSVSSL-Q--DELRRR 409 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEhhhH-H--HHHHhh
Confidence 5899999 99975 46889888 799999999999999999999999999999999988 343221 1 225778
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
|++|+|++ .+|+ -|+++||.++. ....++++.++++.+++.+ +.-..+
T Consensus 410 i~~V~Q~~---------~lF~-~TI~eNI~~g~--------~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 471 (529)
T TIGR02868 410 ISVFAQDA---------HLFD-TTVRDNLRLGR--------PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471 (529)
T ss_pred eEEEccCc---------cccc-ccHHHHHhccC--------CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence 99999996 3454 49999998863 2235577888888877753 123456
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||++..+|+
T Consensus 472 SGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 472 SGGERQRLALARALLADAP 490 (529)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 66 33 99999999986
No 168
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.3e-22 Score=147.66 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=99.2
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--C---cccchhhhhHHHHHHhhCCCc
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--I---QVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~---~~g~i~~~~~~~~~~~~~~~~ 72 (159)
..|+++|+ +.|++..++.+++ |++++|+||||||||||+++|+|++. | ++|++.++| .++........
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g-~~~~~~~~~~~ 89 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG-SNILKGKVDLV 89 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC-EEccccccCHH
Confidence 46899999 9998878888887 78999999999999999999999987 3 589999887 33211000011
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM 145 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~ 145 (159)
..++.+++++|++ .+++. |+.+|+.+.... ..........+++.++++.+++.. ..+..+|+
T Consensus 90 ~~~~~i~~v~q~~---------~~~~~-tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~ 158 (259)
T PRK14274 90 ELRKNIGMVFQKG---------NPFPQ-SIFDNVAYGPRI-HGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG 158 (259)
T ss_pred HHhhceEEEecCC---------ccccc-CHHHHHHhHHHh-cCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH
Confidence 1346799999985 34554 888888764210 100011122345677888888741 34566777
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 159 Gq~qrv~laral~~~p~ 175 (259)
T PRK14274 159 GQQQRLCIARALATNPD 175 (259)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 169
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.9e-22 Score=148.35 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=100.3
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--C---cccchhhhhHHHHHHhhC
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--I---QVKQVRANTLQELIYKNG 69 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~---~~g~i~~~~~~~~~~~~~ 69 (159)
|....|+++|+ +.|++..++.+++ |++++|+||||||||||+++|+|+.. | ++|+|.++| .++.....
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g-~~~~~~~~ 79 (252)
T PRK14239 1 MTEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG-HNIYSPRT 79 (252)
T ss_pred CCCceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC-EECcCccc
Confidence 44346899999 9998878888887 78999999999999999999999853 5 489999887 33211000
Q ss_pred CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCee
Q psy17514 70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHF 142 (159)
Q Consensus 70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~ 142 (159)
.....++.+++++|++ .+++ .|+.+|+.++... ..........+++.++++.+++. ...+..
T Consensus 80 ~~~~~~~~i~~v~q~~---------~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 148 (252)
T PRK14239 80 DTVDLRKEIGMVFQQP---------NPFP-MSIYENVVYGLRL-KGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG 148 (252)
T ss_pred chHhhhhcEEEEecCC---------ccCc-CcHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCccc
Confidence 0111356799999985 3455 6899998764210 10111111234567788888763 145667
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++|++++.+|+
T Consensus 149 LS~G~~qrv~laral~~~p~ 168 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPK 168 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 777 33 99999999986
No 170
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.1e-22 Score=147.91 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=99.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..+|++++ +++++|+|||||||||||++|+|+++ |++|++.++| .++.........
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g-~~i~~~~~~~~~ 91 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG-TDLYDPRVDPVE 91 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC-EEcccccCCHHH
Confidence 5899999 9998888889887 78999999999999999999999987 5899999887 332110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.+++++|++ .+++ .|+.+|+.+... ..... ....+++.++++.+++. ...+..+|+
T Consensus 92 ~~~~i~~v~q~~---------~l~~-~tv~enl~~~~~--~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 158 (269)
T PRK14259 92 VRRRIGMVFQQP---------NPFP-KSIYENIAFGAR--INGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGG 158 (269)
T ss_pred HhhceEEEccCC---------ccch-hhHHHHHhhhhh--hcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHH
Confidence 345799999985 3555 389999876532 11001 11234567778888763 134567777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 159 ~~qrl~laral~~~p~ 174 (269)
T PRK14259 159 QQQRLCIARTIAIEPE 174 (269)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 171
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.9e-21 Score=142.88 Aligned_cols=141 Identities=11% Similarity=0.182 Sum_probs=97.8
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.|+ +..++.+++ |++++|+||||||||||+++|+|+++|++|+|.++| +++.. ...+..
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~-----~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG-QPTRQ-----ALQKNL 79 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEhHH-----hhccce
Confidence 6899999 9995 577888887 789999999999999999999999999999999887 33321 112346
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
++|++|++.. ......++.+++.++.... ..........+++.++++.++|.. ..+..+|+ |+ +
T Consensus 80 i~~v~q~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 80 VAYVPQSEEV-------DWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVF 152 (272)
T ss_pred EEEecccccc-------ccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH
Confidence 9999998521 0111235666665431100 000011112346778899999964 45667777 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
+|++++.+|+
T Consensus 153 laraL~~~p~ 162 (272)
T PRK15056 153 LARAIAQQGQ 162 (272)
T ss_pred HHHHHhcCCC
Confidence 9999999986
No 172
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.2e-22 Score=149.01 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=106.3
Q ss_pred EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-C----cccchhhhhHHHHHHhhCC
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-I----QVKQVRANTLQELIYKNGQ 70 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-~----~~g~i~~~~~~~~~~~~~~ 70 (159)
|+++|+ ..|.. ..+++++| +|+++|+|+|||||||+..+|.++++ + .+|+|.++| +++......
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g-~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG-KDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECC-cccccCCHH
Confidence 688898 77754 35788888 69999999999999999999999997 3 368999988 555432221
Q ss_pred C--ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCCee
Q psy17514 71 A--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNPHF 142 (159)
Q Consensus 71 ~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~ 142 (159)
. ..+.+.|+++||+|.. .+.|-++|.+++.-..........+.+..+++.++|+.++|.. .+|++
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~-------sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe 153 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMT-------SLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE 153 (316)
T ss_pred HHHhhcCceEEEEEcCchh-------hcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence 1 2356789999999854 3566677777665432211110012234568899999999985 58999
Q ss_pred EEe---Ch-hHhHhhcCCCC
Q psy17514 143 LIM---QG-RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~---q~-~ia~~l~~~p~ 158 (159)
+|+ |+ .||.+++.+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCC
Confidence 999 45 99999999996
No 173
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.84 E-value=2.5e-22 Score=146.52 Aligned_cols=137 Identities=19% Similarity=0.274 Sum_probs=101.0
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|+++.++.+++ +++++|+||||||||||+++|+|+++|++|++.++| .++.. ....++.++
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g-~~~~~----~~~~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNG-QDATR----VHARDRKIG 75 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEcCc----CChhhcCEE
Confidence 468899 8898888888887 789999999999999999999999999999999887 33211 111245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|.+ .+++.+|+.+|+.+... ..........+.+.++++.+++.. ..+..+|+ |. ++|++
T Consensus 76 ~~~q~~---------~~~~~~t~~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHY---------ALFKHLTVRDNIAFGLE--IRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecCh---------hhccCCcHHHHHHhHHH--hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 999985 46667788888865421 110011122356788899999864 44566777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 145 l~~~p~ 150 (237)
T TIGR00968 145 LAVEPQ 150 (237)
T ss_pred HhcCCC
Confidence 999986
No 174
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=3.6e-22 Score=142.97 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=99.4
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+..|++|+|.+++ .++ . .. . .+..++
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~-~-~~--~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG-GDI-D-DP--D-VAEACH 76 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EeC-c-ch--h-hHhhcE
Confidence 799999 9998878888888 789999999999999999999999999999999887 221 1 00 1 345688
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|.+ .+++..|+.+|+.+... . .+ ...+++.++++.++|.. ..+..+|+ |+ +||++
T Consensus 77 ~~~~~~---------~~~~~~tv~~~l~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 141 (207)
T PRK13539 77 YLGHRN---------AMKPALTVAENLEFWAA--F--LG--GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARL 141 (207)
T ss_pred EecCCC---------cCCCCCcHHHHHHHHHH--h--cC--CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHH
Confidence 888653 34566788888765321 1 11 12356888999999965 34566776 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 142 l~~~p~ 147 (207)
T PRK13539 142 LVSNRP 147 (207)
T ss_pred HhcCCC
Confidence 999986
No 175
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.3e-22 Score=146.90 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=99.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|+..+ ++|+|.++| .++.........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG-QDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC-EEccccccchHH
Confidence 4899999 9998888888888 789999999999999999999998763 689999987 332110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.+..+++++|++ .+++ .|+.+|+.++... ..........+.+.++++.+++. ...+..+|+
T Consensus 82 ~~~~i~~~~q~~---------~~~~-~t~~~ni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 150 (250)
T PRK14240 82 LRKRVGMVFQQP---------NPFP-MSIYDNVAYGPRT-HGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGG 150 (250)
T ss_pred HhccEEEEecCC---------ccCc-ccHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHH
Confidence 356799999985 3455 6888988764210 10011112245677788888763 134567777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|. +|||+++.+|+
T Consensus 151 ~~qrv~laral~~~p~ 166 (250)
T PRK14240 151 QQQRLCIARALAVEPE 166 (250)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 176
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.6e-22 Score=147.03 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=100.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ ++|+++.++++++ |++++|+|+||||||||+++|+|+++|+.|++.++| .++.. ....++.++
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g-~~~~~----~~~~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG-KDITN----LPPHKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EEcCc----CChhhcceE
Confidence 468899 8998878888887 789999999999999999999999999999999887 33211 011245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+... ..........+++.++++.+++.. ..+..+|+ |. ++|++
T Consensus 76 ~~~q~~---------~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNY---------ALFPHLTVFENIAFGLR--LKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEeccc---------ccCCCCcHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999985 35666788888765421 110011122456778899999975 45667777 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 145 l~~~p~ 150 (232)
T cd03300 145 LVNEPK 150 (232)
T ss_pred HhcCCC
Confidence 999986
No 177
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.9e-22 Score=147.40 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=98.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++++++ |++++|+|+||||||||+++|+|+.. |++|++.++| +++.........
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG-LNILDSNINVVN 99 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC-EEcccccccHHH
Confidence 4899999 9998888899887 78999999999999999999999864 6899999887 332110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.++|++|++ .+++. |+.+|+.++.. ...........+.+.++++.+++. ...+..+|+
T Consensus 100 ~~~~i~~v~q~~---------~~~~~-tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 168 (268)
T PRK14248 100 LRREIGMVFQKP---------NPFPK-SIYNNITHALK-YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGG 168 (268)
T ss_pred HhccEEEEecCC---------ccCcc-cHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHH
Confidence 356799999985 34553 88888876421 010001111234567778888773 145667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 169 q~qrl~laral~~~p~ 184 (268)
T PRK14248 169 QQQRLCIARTLAMKPA 184 (268)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 33 99999999986
No 178
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.84 E-value=1.7e-22 Score=149.69 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=101.1
Q ss_pred EEEEeCe-eeec---------CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514 5 SMVLDGF-KSYG---------TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG 69 (159)
Q Consensus 5 ~l~l~~~-~~~~---------~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~ 69 (159)
.|+++|+ +.|+ ++.++.+++ |++++|+|||||||||||++|+|+++|++|+|.++| .++.....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRG-QDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEccccCH
Confidence 3789999 9995 356888888 789999999999999999999999999999999987 33211000
Q ss_pred CC-ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEE
Q psy17514 70 QA-GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLI 144 (159)
Q Consensus 70 ~~-~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~ 144 (159)
.. ...++.|++++|++.. .+++.+|+.+|+.+........ ......+++.++++.++|. . ..+..+|
T Consensus 81 ~~~~~~~~~i~~v~q~~~~-------~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 152 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPS-------AVNPRMTVRQIIGEPLRHLTSL-DESEQKARIAELLDMVGLRSEDADKLPRQLS 152 (265)
T ss_pred HHHHHHhhceEEEecChhh-------hcCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCChhhhhCChhhCC
Confidence 00 0124579999998521 2445678888875432110111 1122345778899999995 2 3566777
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ ++|++++.+|+
T Consensus 153 gGe~qrv~laral~~~p~ 170 (265)
T TIGR02769 153 GGQLQRINIARALAVKPK 170 (265)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 7 33 99999999986
No 179
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-22 Score=148.79 Aligned_cols=142 Identities=14% Similarity=0.176 Sum_probs=99.8
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCc
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~ 72 (159)
..|+++|+ +.|+++.+|.+++ |++++|+|+||||||||+++|+|+++| ++|+|.++| .++........
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~ 89 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG-EDIYEPDVDVV 89 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC-EEcccccchHH
Confidence 36899999 8998878888888 789999999999999999999999875 799999877 33211000011
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc----c---CCCeeEEe
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN----V---NNPHFLIM 145 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~---~~~~~l~~ 145 (159)
..++.++|++|++ .+++ .|+.+|+.+... .... ......+++.++++.+++. . ..+..+|+
T Consensus 90 ~~~~~i~~v~q~~---------~~~~-~tv~enl~~~~~-~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 157 (258)
T PRK14268 90 ELRKNVGMVFQKP---------NPFP-MSIYDNVAYGPR-IHGA-NKKDLDGVVENALRSAALWDETSDRLKSPALSLSG 157 (258)
T ss_pred HHhhhEEEEecCC---------ccCc-ccHHHHHHHHHH-HcCC-CHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCH
Confidence 1245799999985 3555 789999876421 0100 1111234577889988873 1 34566766
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|. +||++++.+|+
T Consensus 158 G~~qrv~laral~~~p~ 174 (258)
T PRK14268 158 GQQQRLCIARTLAVKPK 174 (258)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 33 99999999986
No 180
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.8e-22 Score=147.42 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=100.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|+++.+|++++ |++++|+|||||||||||++|+|++. |++|+|.++| .++.........
T Consensus 20 ~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~ 98 (267)
T PRK14237 20 ALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRG-IDINRKEINVYE 98 (267)
T ss_pred EEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECC-EEcccccCChHH
Confidence 5899999 9998888899888 78999999999999999999999986 4799999887 333110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.|++++|++ .+++ .|+.+|+.++... ..........+++.++++.++|. ...+..+|+
T Consensus 99 ~~~~i~~v~q~~---------~~~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 167 (267)
T PRK14237 99 MRKHIGMVFQRP---------NPFA-KSIYENITFALER-AGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGG 167 (267)
T ss_pred HhcceEEEecCC---------cccc-ccHHHHHHhHHHh-cCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHH
Confidence 356799999985 3455 4889998765220 00001112235567788888873 145667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|. ++||+++.+|+
T Consensus 168 ~~qrl~laral~~~p~ 183 (267)
T PRK14237 168 QQQRLCIARAIAVKPD 183 (267)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 181
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.83 E-value=8e-23 Score=144.48 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=90.5
Q ss_pred cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCC
Q psy17514 15 GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKN 89 (159)
Q Consensus 15 ~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 89 (159)
++..++++++ +++++|+||||||||||+++|+|+++|++|+|.++| +++..........++.+++++|++..
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i~~~~q~~~~-- 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDG-EPLDYSRKGLLERRQRVGLVFQDPDD-- 79 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECC-EEccccccchHHHHhhEEEEecChhh--
Confidence 4455677776 789999999999999999999999999999999887 33211011111134579999998521
Q ss_pred CCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 90 CPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 90 ~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
.++ ..|+.+|+.++.. ..........+++.++++.++|.. ..+..+|+ |+ ++|++++.+|+
T Consensus 80 -----~~~-~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 147 (190)
T TIGR01166 80 -----QLF-AADVDQDVAFGPL--NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPD 147 (190)
T ss_pred -----ccc-cccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 123 3588888876421 110011112346788899999964 45677777 33 99999999986
No 182
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.9e-22 Score=146.61 Aligned_cols=142 Identities=14% Similarity=0.199 Sum_probs=99.1
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|+...++.+++ +++++|+|+||||||||+++|+|+++ |++|++.++| .++.........
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g-~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG-QNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC-EEcccccchHHH
Confidence 5899999 9998888888887 78999999999999999999999986 4789999887 332110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.+++++|++ .+++ .|+.+|+.+... ...........+++.++++.+++. ...+..+|+
T Consensus 83 ~~~~i~~~~q~~---------~~~~-~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14251 83 LRKEVGMVFQQP---------TPFP-FSVYDNVAYGLK-IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGG 151 (251)
T ss_pred hhccEEEEecCC---------ccCC-CcHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHH
Confidence 356799999985 3444 588898876422 010011111234677888888883 134567777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|. +||++++.+|+
T Consensus 152 q~qr~~laral~~~p~ 167 (251)
T PRK14251 152 QQQRICIARALAVRPK 167 (251)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 183
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.8e-22 Score=146.18 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=98.7
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCCc
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~~ 72 (159)
..|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|++.|. +|+|.++| .++........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~~~~~~~~~~ 81 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG-QDIYGPRVDPV 81 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC-EEcccCccCHH
Confidence 46999999 9998888899888 6899999999999999999999998764 79999887 33211000011
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM 145 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~ 145 (159)
..++.++|++|++ .+++.+|+.+|+.+... ...........+.+.++++.+++. ...+..+|+
T Consensus 82 ~~~~~i~~~~q~~---------~~~~~~t~~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 151 (252)
T PRK14272 82 AMRRRVGMVFQKP---------NPFPTMSVFDNVVAGLK-LAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSG 151 (252)
T ss_pred HhhceeEEEeccC---------ccCcCCCHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCH
Confidence 2356799999985 46666788888865321 010111111223455666666552 134566776
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 152 G~~qrv~laral~~~p~ 168 (252)
T PRK14272 152 GQQQRLCIARALAVEPE 168 (252)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 184
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.8e-22 Score=148.18 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=100.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..+|++++ +++++|+||||||||||+++|+|++. |++|+|.++| .++.........
T Consensus 39 ~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G-~~i~~~~~~~~~ 117 (285)
T PRK14254 39 VIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG-KNVYDADVDPVA 117 (285)
T ss_pred eEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC-EEccccccchHh
Confidence 4899999 9998878888887 78999999999999999999999986 5899999887 332110000112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.+++++|++ .+++. ++.+|+.+... .... .....+++.++++.+++. ...+..||+
T Consensus 118 ~~~~i~~v~q~~---------~l~~~-tv~enl~~~~~--~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgG 184 (285)
T PRK14254 118 LRRRIGMVFQKP---------NPFPK-SIYDNVAYGLK--IQGY-DGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGG 184 (285)
T ss_pred hhccEEEEecCC---------ccCcC-CHHHHHHHHHH--HcCC-cHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHH
Confidence 356799999985 34554 88888875421 1100 112245678889998874 245677777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 185 e~qrv~LAraL~~~p~ 200 (285)
T PRK14254 185 QQQRLCIARAIAPDPE 200 (285)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 33 99999999986
No 185
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.2e-22 Score=149.89 Aligned_cols=141 Identities=19% Similarity=0.226 Sum_probs=101.2
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ +.|++ ..++.+++ |++++|+|+||||||||+++|+|+++|++|+|.++| .++.. .. ....+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~i~~-~~-~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG-ELLTA-EN-VWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC-EECCc-CC-HHHHh
Confidence 4899999 99974 34788887 789999999999999999999999999999999987 33210 00 11135
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
..++|++|++. ..++..|+.+|+.++... ... ......+++.++++.++|.. ..+..+|+ |+ +
T Consensus 81 ~~i~~v~q~~~--------~~~~~~tv~eni~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 150 (277)
T PRK13642 81 RKIGMVFQNPD--------NQFVGATVEDDVAFGMEN-QGI-PREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVA 150 (277)
T ss_pred cceEEEEECHH--------HhhccCCHHHHHHhhHHH-cCC-CHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH
Confidence 67999999852 234456888998764220 000 11112346778899999865 45677777 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
||++++.+|+
T Consensus 151 lAraL~~~p~ 160 (277)
T PRK13642 151 VAGIIALRPE 160 (277)
T ss_pred HHHHHHcCCC
Confidence 9999999996
No 186
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.3e-22 Score=145.34 Aligned_cols=141 Identities=13% Similarity=0.183 Sum_probs=99.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..+|++++ |++++|+||||||||||+++|+|+..+ ++|++.++| .++.........
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG-ENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC-EEccccccchhh
Confidence 6899999 9998888899888 789999999999999999999998753 479999887 333211001112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCccc-------CCCeeEEe
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~ 145 (159)
.++.+++++|++ .+++. |+.+|+.+... ... .......+.+.++++.+++.. ..+..+|+
T Consensus 85 ~~~~i~~~~q~~---------~~~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 152 (253)
T PRK14261 85 LRRKIGMVFQRP---------NPFPK-SIYENVAYGPR--IHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG 152 (253)
T ss_pred hhceEEEEecCC---------ccCcc-cHHHHHHhhHH--hcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH
Confidence 356799999985 35554 89999876532 110 011122345677888887731 34566776
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 153 G~~qrv~laral~~~p~ 169 (253)
T PRK14261 153 GQQQRLCIARTLAVNPE 169 (253)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 187
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.83 E-value=5.5e-22 Score=143.51 Aligned_cols=142 Identities=11% Similarity=0.121 Sum_probs=98.8
Q ss_pred EEEeCe-eeecC-------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhH-H--HHHHhhC
Q psy17514 6 MVLDGF-KSYGT-------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL-Q--ELIYKNG 69 (159)
Q Consensus 6 l~l~~~-~~~~~-------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~-~--~~~~~~~ 69 (159)
|+++|+ +.|+. ..++++++ +++++|+||||||||||+++|+|+++|++|+|.+++. . ++.....
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999 99962 36888887 7899999999999999999999999999999988631 1 2211000
Q ss_pred CC--ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeE
Q psy17514 70 QA--GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFL 143 (159)
Q Consensus 70 ~~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l 143 (159)
.. ...++.+++++|++ .+++.+|+.+++.+.... .. .......+++.++++.+++.. ..+..+
T Consensus 82 ~~~~~~~~~~i~~~~q~~---------~~~~~~tv~e~l~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFL---------RVIPRVSALEVVAEPLLE-RG-VPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred HHHHHHHhcceEEEeccc---------ccCCCccHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 00 01235699999985 366777888887653210 10 011122456788899999864 245667
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ ++|++++.+|+
T Consensus 151 S~G~~qrl~laral~~~p~ 169 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYP 169 (224)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 76 33 99999999985
No 188
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=5.7e-22 Score=142.61 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=100.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ ++|+++.++.+++ |++++|+|+||||||||+++|+|+++|++|++.+++ +++.. ...++.+
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~i~~-----~~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG-KTATR-----GDRSRFM 84 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECC-EEccc-----hhhhhce
Confidence 4899999 9998888889888 789999999999999999999999999999999887 33211 0123468
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++++|++ .+++.+|+.+|+.+... + .+. ...+.+.++++.++|.. ..+..+|+ |+ ++|+
T Consensus 85 ~~~~q~~---------~~~~~~t~~e~l~~~~~--~--~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (214)
T PRK13543 85 AYLGHLP---------GLKADLSTLENLHFLCG--L--HGR-RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALAR 150 (214)
T ss_pred EEeecCc---------ccccCCcHHHHHHHHHH--h--cCC-cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHH
Confidence 9999875 35666788888765321 1 111 12356678899999864 45667777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 151 al~~~p~ 157 (214)
T PRK13543 151 LWLSPAP 157 (214)
T ss_pred HHhcCCC
Confidence 9999986
No 189
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.83 E-value=3.9e-22 Score=147.86 Aligned_cols=143 Identities=15% Similarity=0.255 Sum_probs=98.9
Q ss_pred EEEEeCe-eeecC---------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514 5 SMVLDGF-KSYGT---------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG 69 (159)
Q Consensus 5 ~l~l~~~-~~~~~---------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~ 69 (159)
.|+++|+ +.|+. ..++.+++ +++++|+|||||||||||++|+|+++|++|+|.++| .++.. ..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDD-HPLHF-GD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECC-EECCC-Cc
Confidence 4899999 99962 45788887 689999999999999999999999999999999887 33211 11
Q ss_pred CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe
Q psy17514 70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM 145 (159)
Q Consensus 70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~ 145 (159)
....++.+++++|++.. .+++.+++.+++.+........ ......+++.++++.++|. . ..+..+|+
T Consensus 82 -~~~~~~~i~~v~q~~~~-------~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 152 (267)
T PRK15112 82 -YSYRSQRIRMIFQDPST-------SLNPRQRISQILDFPLRLNTDL-EPEQREKQIIETLRQVGLLPDHASYYPHMLAP 152 (267)
T ss_pred -hhhHhccEEEEecCchh-------hcCcchhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCChHHHhcCchhcCH
Confidence 11124579999998521 1345566766665432100000 1112235678899999995 2 34567777
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 153 G~~qrv~laral~~~p~ 169 (267)
T PRK15112 153 GQKQRLGLARALILRPK 169 (267)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 33 99999999986
No 190
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.83 E-value=3.4e-22 Score=146.18 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=97.7
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|++..+|.+++ |++++|+||||||||||+++|+|++ .|++|+|.++| +++.. .......+..
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG-QDLLE-LEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECC-EecCC-CCHHHhhccc
Confidence 478899 9998888899888 6899999999999999999999995 68999999987 33211 0000112345
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEE-C--CEEeCHHHHHHHHHhcCccc---C-CCe-eEEe-C
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMI-N--GSSVNPKRVSDLFSSVNLNV---N-NPH-FLIM-Q 146 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~-~--~~~~~~~~~~~~l~~~~l~~---~-~~~-~l~~-q 146 (159)
+++++|++ .+++.+|+.+++.+..... ... . ......+++.++++.++|.. + .+. .+|+ |
T Consensus 79 i~~v~q~~---------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYP---------EEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGE 149 (243)
T ss_pred eEeeeccc---------cccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHH
Confidence 89999985 3566778887775432100 000 0 01111356788899999962 2 333 3777 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ ++|++++.+|+
T Consensus 150 ~qrl~la~al~~~p~ 164 (243)
T TIGR01978 150 KKRNEILQMALLEPK 164 (243)
T ss_pred HHHHHHHHHHhcCCC
Confidence 3 99999999986
No 191
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.1e-22 Score=145.24 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=99.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ |++++|+||||||||||+++|+|++.|+ +|+|.+++ .++.........
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g-~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN-ENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC-EEccccccChHH
Confidence 4889999 9998877888887 7899999999999999999999999987 59998887 332110001112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-INGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~ 145 (159)
.++.+++++|++ .+++. |+.+|+.+... +. ........+.+.++++.+++. ...+..+|+
T Consensus 83 ~~~~i~~v~q~~---------~~~~~-tv~enl~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 150 (251)
T PRK14249 83 LRKRVGMVFQQP---------NPFPK-SIFDNVAFGPR--MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG 150 (251)
T ss_pred hhceEEEEecCC---------ccCcC-cHHHHHhhHHH--hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH
Confidence 356799999985 35554 88899876532 11 000111234566677777763 245677777
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|. ++||+++.+|+
T Consensus 151 Gq~qrv~laral~~~p~ 167 (251)
T PRK14249 151 GQQQRLCIARVLAIEPE 167 (251)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 192
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.6e-22 Score=146.31 Aligned_cols=136 Identities=13% Similarity=0.226 Sum_probs=99.7
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++. ++++++ +++++|+||||||||||+++|+|+++|++|+++++| .++.. ....++.++
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g-~~~~~----~~~~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG-KDITN----LPPEKRDIS 74 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-EEcCc----CChhHcCEE
Confidence 468889 888764 678887 689999999999999999999999999999999988 33211 011246799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|++ .+++.+|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |. +||++
T Consensus 75 ~~~q~~---------~~~~~~t~~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNY---------ALFPHMTVYKNIAYGLK--KRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecC---------ccCCCccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHH
Confidence 999985 46677899998875421 100011223456778899999964 45667776 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 144 l~~~p~ 149 (235)
T cd03299 144 LVVNPK 149 (235)
T ss_pred HHcCCC
Confidence 999986
No 193
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.83 E-value=3e-21 Score=141.93 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=92.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|+++|++|+|.+.+ +..+
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--------------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--------------KLRI 69 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC--------------ccCE
Confidence 5899999 9998888888887 789999999999999999999999999999998754 2359
Q ss_pred EEEEEcCCCCCCCCCccCCCe--EEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNT--IVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~--~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
+|++|++. +++. .++.+++.+. .....+++.++++.++|.. ..+..+|+ |+ ++
T Consensus 70 ~~v~q~~~---------~~~~l~~~~~~~~~~~---------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 131 (251)
T PRK09544 70 GYVPQKLY---------LDTTLPLTVNRFLRLR---------PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLL 131 (251)
T ss_pred EEeccccc---------cccccChhHHHHHhcc---------ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHH
Confidence 99999852 2222 2343333221 1112456788999999965 45667777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++++.+|+
T Consensus 132 aral~~~p~ 140 (251)
T PRK09544 132 ARALLNRPQ 140 (251)
T ss_pred HHHHhcCCC
Confidence 999999986
No 194
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.3e-22 Score=145.84 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=100.0
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCc
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~ 72 (159)
..|+++|+ +.|++..++++++ |++++|+|+||||||||+++|+|++++ ++|++.++| +++........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG-QNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC-EeccccccchH
Confidence 46899999 9998878888887 789999999999999999999999885 479999887 33321001111
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM 145 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~ 145 (159)
..+..|++++|++ .+++ .|+.+|+.++... ..........+.+.++++.+++. ...+..+|+
T Consensus 85 ~~~~~i~~v~q~~---------~l~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 153 (259)
T PRK14260 85 RLRRQIGMVFQRP---------NPFP-MSIYENVAYGVRI-SAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG 153 (259)
T ss_pred hhhhheEEEeccc---------ccCC-ccHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence 2346799999985 3555 7899998764220 00001111234567788888873 134567776
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ +|||+++.+|+
T Consensus 154 G~~qrv~laral~~~p~ 170 (259)
T PRK14260 154 GQQQRLCIARALAIKPK 170 (259)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 195
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.83 E-value=6.4e-22 Score=146.98 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=97.1
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc--------ccchhhhhHHHHHHhhCCC
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ--------VKQVRANTLQELIYKNGQA 71 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~--------~g~i~~~~~~~~~~~~~~~ 71 (159)
|+++|+ +.|++..+|.++| |++++|+||||||||||+++|+|+++|+ +|+|.++| .++.... .
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g-~~~~~~~--~ 78 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG-EPLAAID--A 78 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECC-EEcccCC--H
Confidence 789999 9998888899888 7899999999999999999999999987 89999887 3321100 0
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM- 145 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~- 145 (159)
...++.+++++|++. .+..+|+.+|+.++........+ .....+.+.++++.+++.. ..+..+|+
T Consensus 79 ~~~~~~~~~v~q~~~---------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 149 (272)
T PRK13547 79 PRLARLRAVLPQAAQ---------PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGG 149 (272)
T ss_pred HHHHhhcEEecccCC---------CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHH
Confidence 112345899999852 23346888888764311100001 0112345778899999975 45667777
Q ss_pred Ch---hHhHhhcC
Q psy17514 146 QG---RVTKVLNM 155 (159)
Q Consensus 146 q~---~ia~~l~~ 155 (159)
|+ +||++++.
T Consensus 150 ~~qrv~laral~~ 162 (272)
T PRK13547 150 ELARVQFARVLAQ 162 (272)
T ss_pred HHHHHHHHHHHhc
Confidence 33 99999994
No 196
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.3e-22 Score=149.18 Aligned_cols=142 Identities=16% Similarity=0.210 Sum_probs=98.3
Q ss_pred EEEeCe-eeecC-----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh--CCCc
Q psy17514 6 MVLDGF-KSYGT-----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN--GQAG 72 (159)
Q Consensus 6 l~l~~~-~~~~~-----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~--~~~~ 72 (159)
|+++|+ +.|++ ..+|.+++ +++++|+||||||||||+++|+|+++|++|+|.++| .++.... ....
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDD-TLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccccccCHH
Confidence 789999 99964 35788887 689999999999999999999999999999999987 3321100 0001
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~ 147 (159)
..++.|+|++|++.. .+++ .|+.+|+.+... ..........+.+.++++.++|.. ..+..+|+ |+
T Consensus 82 ~~~~~i~~~~q~~~~-------~~~~-~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPES-------QLFE-ETVLKDVAFGPQ--NFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhh-------hhcc-ccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 134579999998521 1333 588888875421 110011122345678899999962 34567777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 152 qrv~la~al~~~p~ 165 (280)
T PRK13649 152 RRVAIAGILAMEPK 165 (280)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999985
No 197
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=1.5e-21 Score=156.72 Aligned_cols=143 Identities=12% Similarity=0.120 Sum_probs=100.8
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhH----------------
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTL---------------- 61 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~---------------- 61 (159)
|+++|+ ++|+++.++++++ |++++|+|||||||||||++|+|++ .|++|+|.+.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 478999 9998878888888 7899999999999999999999997 689999887510
Q ss_pred ------HHH-------HHhhC-CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHH
Q psy17514 62 ------QEL-------IYKNG-QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVS 127 (159)
Q Consensus 62 ------~~~-------~~~~~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~ 127 (159)
.++ ..... .....++.++++||++ ..+++.+|+.+|+.++... ... ......+++.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~--------~~~~~~~tv~~~l~~~~~~-~~~-~~~~~~~~~~ 150 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT--------FALYGDDTVLDNVLEALEE-IGY-EGKEAVGRAV 150 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccc--------cccCCCCCHHHHHHHHHHH-cCC-CHHHHHHHHH
Confidence 110 00000 0001245799999973 1356667888988764220 111 1112245788
Q ss_pred HHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 128 DLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 128 ~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
++++.++|.. ..+..||+ |+ +||++|+.+|+
T Consensus 151 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~ 188 (520)
T TIGR03269 151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF 188 (520)
T ss_pred HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 8999999965 45778888 33 99999999996
No 198
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=1.8e-22 Score=146.62 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=97.5
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+++|++|++.+++ .++.. .......++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG-EDITK-LPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-EECCC-CCHHHHHHhCeE
Confidence 468899 9998878888888 789999999999999999999999999999999887 22210 000011245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcC-ccc---CCCeeEEe-Ch---hHhH
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVN-LNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~---~~~~~l~~-q~---~ia~ 151 (159)
|++|++ .+++.+|+.+|+.+... .. +. ...+...++++.++ +.. ..+..+|+ |. ++|+
T Consensus 79 ~~~q~~---------~~~~~~tv~~~l~~~~~--~~--~~-~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~ 144 (230)
T TIGR03410 79 YVPQGR---------EIFPRLTVEENLLTGLA--AL--PR-RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIAR 144 (230)
T ss_pred EeccCC---------cccCCCcHHHHHHHHHH--hc--Cc-chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHH
Confidence 999985 36677799988876422 11 11 11234466666665 332 45667777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 145 al~~~p~ 151 (230)
T TIGR03410 145 ALVTRPK 151 (230)
T ss_pred HHhcCCC
Confidence 9999986
No 199
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=7.8e-19 Score=128.87 Aligned_cols=143 Identities=34% Similarity=0.554 Sum_probs=97.4
Q ss_pred EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--CceeEEEEEE
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGVTKASVTL 80 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~~~i~~ 80 (159)
+.+|+++||++|.+...+. +...+++|+|||||||||||++|++++.+..|+++..+..++++.+.. .....+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~~-~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIG-PFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeeec-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEE
Confidence 3579999999998765443 446799999999999999999999999988888887765666654321 1112567788
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p 157 (159)
+|+..+. ....+.+.+.-+ ...+.++++....+++.++++.++++...+..+..||.+.++..+.|
T Consensus 80 ~f~~~~~----------~~~~~~~~~~~~-~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 80 VYEDDDG----------EEKTFRRIITGG-SSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred EEEcCCC----------cEEEEEEEEECC-ceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 8875421 223445444333 33567888888888889999999997543333344444444444433
No 200
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-21 Score=144.07 Aligned_cols=141 Identities=16% Similarity=0.230 Sum_probs=98.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|+++.++++++ |++++|+||||||||||+++|+|+.+| ++|++.++| .++.. ......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g-~~~~~-~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG-EDIYG-NIDVAD 80 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC-EEccc-ccchHH
Confidence 5899999 9998888899888 689999999999999999999999886 489998887 22210 000112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.++.++|++|++ .+++ .|+.+|+.+.... ..........+++.++++.+++.. ..+..+|+
T Consensus 81 ~~~~i~~~~q~~---------~~~~-~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 149 (249)
T PRK14253 81 LRIKVGMVFQKP---------NPFP-MSIYENVAYGLRA-QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG 149 (249)
T ss_pred HHhheeEEecCC---------CcCc-ccHHHHHHhHHHh-cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence 356799999985 3555 6888888764210 100011122345677788887631 34566776
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +|||+++.+|+
T Consensus 150 ~~qrv~laral~~~p~ 165 (249)
T PRK14253 150 QQQRLCIARTIAMEPD 165 (249)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 33 99999999986
No 201
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.4e-21 Score=143.47 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=98.0
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ +++++|+|+||||||||+++|+|+.. |++|+|++++ .++.........
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG-KNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC-EEccccccChHH
Confidence 4899999 9998878889888 78999999999999999999999986 3789999887 332110001112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.+++++|++ .+++ .|+.+|+.++.. .... .....+++.++++.+++. ...+..+|+
T Consensus 89 ~~~~i~~v~q~~---------~~~~-~tv~enl~~~~~--~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 155 (264)
T PRK14243 89 VRRRIGMVFQKP---------NPFP-KSIYDNIAYGAR--INGY-KGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGG 155 (264)
T ss_pred HhhhEEEEccCC---------cccc-ccHHHHHHhhhh--hcCc-chHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHH
Confidence 356799999985 3455 388888876532 1100 111234566677777763 135667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +|||+++.+|+
T Consensus 156 q~qrv~laral~~~p~ 171 (264)
T PRK14243 156 QQQRLCIARAIAVQPE 171 (264)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999996
No 202
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1e-21 Score=146.98 Aligned_cols=142 Identities=19% Similarity=0.194 Sum_probs=98.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ |++++|+||||||||||+++|+|+.. |++|+|.++| .++.........
T Consensus 39 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g-~~i~~~~~~~~~ 117 (286)
T PRK14275 39 HVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG-EDIYGKFTDEVL 117 (286)
T ss_pred EEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC-EEhhhcccchHH
Confidence 4889999 9998777888887 78999999999999999999999864 4899999887 333211111111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.++|++|++ .+++. |+.+|+.++... ..........+++.++++.+++. ...+..+|+
T Consensus 118 ~~~~i~~v~q~~---------~l~~~-tv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 186 (286)
T PRK14275 118 LRKKIGMVFQKP---------NPFPK-SIFDNIAYGPRL-HGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGG 186 (286)
T ss_pred hhhcEEEECCCC---------CCCcc-CHHHHHHhHHHh-cCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHH
Confidence 356799999985 34553 899998764210 00111111234567788888763 145667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 187 q~qrv~LAraL~~~p~ 202 (286)
T PRK14275 187 QQQRLCVARTLAVEPE 202 (286)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999985
No 203
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=4.6e-22 Score=149.04 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=99.0
Q ss_pred EEEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh--h-CC
Q psy17514 5 SMVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK--N-GQ 70 (159)
Q Consensus 5 ~l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~--~-~~ 70 (159)
.|+++|+ +.|++. .++.+++ |++++|+||||||||||+++|+|+++|++|++.++| .++... . ..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~~~~~~ 84 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGD-YAIPANLKKIKE 84 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEcccccccccc
Confidence 5899999 999764 3788887 789999999999999999999999999999998877 222100 0 00
Q ss_pred CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-
Q psy17514 71 AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM- 145 (159)
Q Consensus 71 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~- 145 (159)
....++.|++++|++. ..+++ .|+.+|+.++.. ..........+++.++++.++|. . ..+..+|+
T Consensus 85 ~~~~~~~i~~v~q~~~-------~~~~~-~tv~enl~~~~~--~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPE-------YQLFQ-ETIEKDIAFGPV--NLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcc-------hhhhh-hHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHH
Confidence 1113467999999852 11233 488888876421 11001111234567888999984 2 45667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 155 q~qrv~laral~~~p~ 170 (289)
T PRK13645 155 QKRRVALAGIIAMDGN 170 (289)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 33 99999999986
No 204
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.82 E-value=2e-21 Score=143.09 Aligned_cols=137 Identities=11% Similarity=0.082 Sum_probs=96.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC----cccchhhhhHHHHHHhhCCCcee
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI----QVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~----~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
.|+++|+ +.| +..++.+++ |++++|+||||||||||+++|+|+++| ++|+|+++| +++.. ....
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g-~~i~~----~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG-KPVAP----CALR 77 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC-eeccc----cccc
Confidence 6899999 999 567888887 789999999999999999999999998 899999887 33211 1112
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCCeeEEe-Ch
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNPHFLIM-QG 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~l~~-q~ 147 (159)
++.+++++|++.. .+.+..++.+++..... .. +.....+++.++++.++|.. ..+..+|+ |+
T Consensus 78 ~~~i~~v~q~~~~-------~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~ 146 (254)
T PRK10418 78 GRKIATIMQNPRS-------AFNPLHTMHTHARETCL-AL---GKPADDATLTAALEAVGLENAARVLKLYPFEMSGGML 146 (254)
T ss_pred cceEEEEecCCcc-------ccCccccHHHHHHHHHH-Hc---CCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHH
Confidence 4579999998521 12233455444432111 01 11122367888999999863 34567777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 147 qrv~laral~~~p~ 160 (254)
T PRK10418 147 QRMMIALALLCEAP 160 (254)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999986
No 205
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.82 E-value=2.9e-22 Score=152.43 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=102.5
Q ss_pred EEEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCC-
Q psy17514 5 SMVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQ- 70 (159)
Q Consensus 5 ~l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~- 70 (159)
.|+++|+ +.|. ...+++++| |++++|+|+||||||||+++|+|+++|. +|+|.++| .++......
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G-~~i~~~~~~~ 90 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNG-REILNLPEKE 90 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECC-EECCcCCHHH
Confidence 5899999 9995 246788887 7899999999999999999999999885 89999987 333211000
Q ss_pred -CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCCeeE
Q psy17514 71 -AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNPHFL 143 (159)
Q Consensus 71 -~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~l 143 (159)
....++.|+|+||++.. .+++.+++.+++...... ..........+++.++++.++|.. .+|.+|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~-------~l~p~~~v~~~i~~~~~~-~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMT-------SLNPYMRVGEQLMEVLML-HKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchh-------hcCCCCCHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccC
Confidence 00123579999999631 356677887776543210 100011222456788999999863 378888
Q ss_pred Ee---Ch-hHhHhhcCCCC
Q psy17514 144 IM---QG-RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~---q~-~ia~~l~~~p~ 158 (159)
|+ |+ +||++|+.+|+
T Consensus 163 SgG~~QRv~IArAL~~~P~ 181 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPK 181 (330)
T ss_pred CHHHHHHHHHHHHHHcCCC
Confidence 88 33 99999999996
No 206
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=5.1e-22 Score=158.75 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=101.7
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC--cccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI--QVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|++..++++++ |++++|+||||||||||+++|+|+++| ++|+|.++| +++.. .......+..
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSG-SPLKA-SNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC-EECCC-CCHHHHHhCC
Confidence 789999 9998888888888 789999999999999999999999986 799999877 22210 0000112356
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC----CEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch-
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN----GSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG- 147 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~- 147 (159)
++++||++ .+++.+|+.+|+.++.. +... ......+++.++++.++|.. ..+..+|+ |+
T Consensus 80 i~~v~q~~---------~~~~~~tv~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 148 (500)
T TIGR02633 80 IVIIHQEL---------TLVPELSVAENIFLGNE--ITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQ 148 (500)
T ss_pred EEEEeecc---------ccCCCCcHHHHHHhhcc--ccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHH
Confidence 99999985 36677899998876532 1100 11122356788999999964 23567777 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 149 rv~iA~al~~~p~ 161 (500)
T TIGR02633 149 LVEIAKALNKQAR 161 (500)
T ss_pred HHHHHHHHhhCCC
Confidence 99999999986
No 207
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.4e-22 Score=158.82 Aligned_cols=140 Identities=11% Similarity=0.199 Sum_probs=99.9
Q ss_pred EeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 8 LDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 8 l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
++|+ +.|++..++++++ |++++|+||||||||||+++|+|+++|++|+|.++| +++.. .......++.++++
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG-KEIDF-KSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC-EECCC-CCHHHHHhCCEEEE
Confidence 3678 8898878888888 789999999999999999999999999999999887 32210 00001124569999
Q ss_pred EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhh
Q psy17514 82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVL 153 (159)
Q Consensus 82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l 153 (159)
+|++ .+++.+||.+|+.++....... .......+++.++++.+++.. ..+..||+ |+ +||+++
T Consensus 79 ~q~~---------~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al 149 (491)
T PRK10982 79 HQEL---------NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAF 149 (491)
T ss_pred eccc---------ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 9985 3566779999987653110000 011112346788999999864 45677877 33 999999
Q ss_pred cCCCC
Q psy17514 154 NMKPH 158 (159)
Q Consensus 154 ~~~p~ 158 (159)
+.+|+
T Consensus 150 ~~~p~ 154 (491)
T PRK10982 150 SYNAK 154 (491)
T ss_pred HhCCC
Confidence 99986
No 208
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.6e-21 Score=143.34 Aligned_cols=141 Identities=11% Similarity=0.140 Sum_probs=98.1
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCcee
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|+++|+ +.|+++.++.+++ +++++|+||||||||||+++|+|+.. |++|++.++| .++..........
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g-~~i~~~~~~~~~~ 82 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG-VDIYDPAVDVVEL 82 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC-EEcccccccHHHH
Confidence 889999 9998878888887 78999999999999999999999875 3789999887 3321100001113
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-C
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM-Q 146 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~-q 146 (159)
++.+++++|++ .+++. |+.+|+.++... ..........+++.++++.+++.. ..+..+|+ |
T Consensus 83 ~~~i~~~~q~~---------~~~~~-t~~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 151 (250)
T PRK14266 83 RKKVGMVFQKP---------NPFPK-SIFDNVAYGLRI-HGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQ 151 (250)
T ss_pred hhheEEEecCC---------ccCcc-hHHHHHHhHHhh-cCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHH
Confidence 56799999985 35554 888888764210 100111122356778888888731 34556666 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ +||++++.+|+
T Consensus 152 ~qrv~laral~~~p~ 166 (250)
T PRK14266 152 QQRLCIARTIAVSPE 166 (250)
T ss_pred HHHHHHHHHHHcCCC
Confidence 3 99999999986
No 209
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.82 E-value=3.5e-21 Score=155.64 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=100.5
Q ss_pred EEEEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 3 IKSMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 3 ~~~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
...|+++|+ +.|+ ++.+|.+++ |++++|+|||||||||||++|+|+++|++|+|.+.+ .
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~--------------~ 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP--------------G 69 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--------------C
Confidence 457999999 9998 788999998 789999999999999999999999999999998743 1
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-------------EEECC---------------------EEe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-------------YMING---------------------SSV 121 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-------------~~~~~---------------------~~~ 121 (159)
..|++++|++ .+++.+|+.+|+.++.... ..... ...
T Consensus 70 ~~i~~v~Q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (556)
T PRK11819 70 IKVGYLPQEP---------QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD 140 (556)
T ss_pred CEEEEEecCC---------CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccc
Confidence 3599999985 4567789999987642100 00000 001
Q ss_pred CHHHHHHHHHhcCccc--CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 122 NPKRVSDLFSSVNLNV--NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 122 ~~~~~~~~l~~~~l~~--~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
..+++.++++.++|.. ..+..+|+ |+ +||++++.+|+
T Consensus 141 ~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~ 183 (556)
T PRK11819 141 LDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPD 183 (556)
T ss_pred hHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCC
Confidence 1356778899999853 34567777 33 99999999986
No 210
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-21 Score=143.86 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=98.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh---CC--cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL---GI--QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~---~~--~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|+++.++.+++ |++++|+||||||||||+++|+|+. ++ ++|++.++| .++.........
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG-RNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC-EecccccccHHH
Confidence 5889999 9998888888887 7999999999999999999999973 44 489999988 333211100112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.++.++|++|++ .+++ .|+.+|+.++... ..........+++.++++.+++.. ..+..+|+
T Consensus 82 ~~~~i~~v~q~~---------~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14245 82 LRKNVGMVFQRP---------NPFP-KSIFENVAYGLRV-NGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGG 150 (250)
T ss_pred HhhheEEEecCC---------ccCc-ccHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHH
Confidence 356799999985 3444 4888888654210 000011112356778889888742 34567777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 151 ~~qrv~laral~~~p~ 166 (250)
T PRK14245 151 QQQRLCIARAMAVSPS 166 (250)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 211
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.82 E-value=2.9e-21 Score=154.08 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=97.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..+|++++ |++++|+|||||||||||++|+|+++|++|++.+.+ .++.. .. ....++.+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~~~-~~-~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQF-SHITR-LS-FEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECC-ccccc-CC-HHHHHHHh
Confidence 4899999 9998878889888 789999999999999999999999999999998766 22211 00 01123458
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++++|++.....+.... ...+++.+++... ....+++.++++.++|.. ..+..+|+ |+ +||+
T Consensus 80 ~~~~q~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 80 SDEWQRNNTDMLSPGED-DTGRTTAEIIQDE----------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred ceeccCcchhhcccchh-hccccHHHhcccc----------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHH
Confidence 99999753211000000 0124555554321 112457888999999965 45678877 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+++.+|+
T Consensus 149 al~~~p~ 155 (490)
T PRK10938 149 ALMSEPD 155 (490)
T ss_pred HHHcCCC
Confidence 9999996
No 212
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.4e-22 Score=162.08 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=103.9
Q ss_pred EEEEeCe-eeecC-----------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh
Q psy17514 5 SMVLDGF-KSYGT-----------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK 67 (159)
Q Consensus 5 ~l~l~~~-~~~~~-----------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~ 67 (159)
.|+++|+ +.|+. ..++++++ |++++|+|+||||||||+++|+|+++|++|+|+++| +++...
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g-~~i~~~ 391 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG-QRIDTL 391 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECC-EECCcC
Confidence 4899999 99952 46788887 789999999999999999999999999999999987 332110
Q ss_pred hC-CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCee
Q psy17514 68 NG-QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHF 142 (159)
Q Consensus 68 ~~-~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~ 142 (159)
.. .....++.|+|+||++.. .+++.+||.+++.++... ..........+++.++++.++|. . .+|..
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~-------~l~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~ 463 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYA-------SLDPRQTVGDSIMEPLRV-HGLLPGKAAAARVAWLLERVGLLPEHAWRYPHE 463 (623)
T ss_pred CHHHHHHhcCCeEEEecCchh-------hcCCCCCHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHcCCCHHHhhCCccc
Confidence 00 000124579999998621 366778898888754220 00001112235788999999995 2 56788
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
||+ |+ +||++|+.+|+
T Consensus 464 LSgGqrQRv~iAraL~~~p~ 483 (623)
T PRK10261 464 FSGGQRQRICIARALALNPK 483 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 888 33 99999999996
No 213
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2e-21 Score=142.87 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=98.1
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.-+++|+ +.|++..++.+++ |++++|+|+||||||||+++|+|+.. |++|+|.++| +++.........
T Consensus 5 ~~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~i~~~~~~~~~ 83 (251)
T PRK14244 5 HASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG-IDVYSVDTNVVL 83 (251)
T ss_pred EEEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC-EehHhcccchHH
Confidence 3468899 8998878888887 78999999999999999999999986 4689999987 343211111111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCccc-------CCCeeEEe
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~ 145 (159)
.++.++|++|++ .+++. |+.+|+.+.... ... .......+.+.++++.++|.. ..+..+|+
T Consensus 84 ~~~~i~~v~q~~---------~~~~~-tv~~ni~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (251)
T PRK14244 84 LRAKVGMVFQKP---------NPFPK-SIYDNVAYGPKL-HGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG 152 (251)
T ss_pred HhhhEEEEecCc---------ccccC-CHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCH
Confidence 356799999985 34554 788888654210 000 011112345678899999852 24566776
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 153 Gq~qrv~laral~~~p~ 169 (251)
T PRK14244 153 GQQQRLCIARAIAVKPT 169 (251)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 214
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=1.5e-21 Score=134.36 Aligned_cols=143 Identities=17% Similarity=0.291 Sum_probs=103.4
Q ss_pred EEEEeCe-eeecCC---------eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514 5 SMVLDGF-KSYGTR---------VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG 69 (159)
Q Consensus 5 ~l~l~~~-~~~~~~---------~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~ 69 (159)
.|+++|+ |.|..+ .+++.+| +...+|||.||||||||.++|+|+.+|++|+|.+++ ..+.+.+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~-~~L~~~D- 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND-HPLHFGD- 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECC-ccccccc-
Confidence 4788999 887542 3455555 578899999999999999999999999999999987 4433211
Q ss_pred CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccC----CCeeEEe
Q psy17514 70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVN----NPHFLIM 145 (159)
Q Consensus 70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~l~~ 145 (159)
...+.+.|.++||+|.. .+.|.+.+.+-+..+.+....+ ......+++.+-|..+||-++ +|..++.
T Consensus 82 -y~~R~k~IRMiFQDpnt-------s~NPRl~iGqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~ 152 (267)
T COG4167 82 -YSFRSKRIRMIFQDPNT-------SLNPRLRIGQILDFPLRLNTDL-EPEQRRKQIFETLRMVGLLPDHANYYPHMLAP 152 (267)
T ss_pred -hHhhhhheeeeecCCcc-------ccChhhhhhhHhcchhhhcccC-ChHHHHHHHHHHHHHhccCccccccchhhcCc
Confidence 22356789999999864 3556667766666654311111 123345788899999999763 5666666
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ ++||||..+|+
T Consensus 153 ~QKQRVaLARALIL~P~ 169 (267)
T COG4167 153 GQKQRVALARALILRPK 169 (267)
T ss_pred hhHHHHHHHHHHhcCCc
Confidence 44 99999999996
No 215
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.82 E-value=9e-22 Score=146.01 Aligned_cols=145 Identities=18% Similarity=0.230 Sum_probs=99.9
Q ss_pred EEEEeCe-eeec---------CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514 5 SMVLDGF-KSYG---------TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG 69 (159)
Q Consensus 5 ~l~l~~~-~~~~---------~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~ 69 (159)
.|+++|+ +.|+ ++.++.+++ +++++|+||||||||||+++|+|+..|++|+|.+++ .++.....
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g-~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG-EPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EeccccCh
Confidence 4899999 9997 367888888 689999999999999999999999999999999887 33211000
Q ss_pred C-CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEE
Q psy17514 70 Q-AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLI 144 (159)
Q Consensus 70 ~-~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~ 144 (159)
. ....++.+++++|++.. .+++..++.+++.+.... +..........++.++++.+++.. ..+..+|
T Consensus 82 ~~~~~~~~~i~~v~q~~~~-------~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 153 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSIS-------AVNPRKTVREIIREPLRH-LLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLS 153 (268)
T ss_pred hHHHHHHhcEEEEEcChhh-------ccCCCCCHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCC
Confidence 0 01124679999998521 234456777766432110 100011122346888999999852 4566777
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ +||++++.+|+
T Consensus 154 ~Ge~qrl~laral~~~p~ 171 (268)
T PRK10419 154 GGQLQRVCLARALAVEPK 171 (268)
T ss_pred hHHHHHHHHHHHHhcCCC
Confidence 7 33 99999999996
No 216
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.82 E-value=1.7e-21 Score=143.39 Aligned_cols=145 Identities=16% Similarity=0.159 Sum_probs=97.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHH-----HHHhhCCC--
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQE-----LIYKNGQA-- 71 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~-----~~~~~~~~-- 71 (159)
.|+++|+ +.|++..++.+++ |++++|+||||||||||+++|+|+++|++|+|.+++ .+ +.......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM-RSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec-ccccccccccCCHHHHH
Confidence 4899999 9998878888888 789999999999999999999999999999999877 22 21100000
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-C
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-Q 146 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q 146 (159)
...++.+++++|++.. .+++.+++.+|+..... ............++.++++.+++.. ..+..+|+ |
T Consensus 82 ~~~~~~i~~~~q~~~~-------~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRD-------GLRMRVSAGANIGERLM-AIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HhhhcceEEEEeCccc-------ccCccccHHHHHHHHHH-HhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence 0113569999998521 13334455556532110 0000001122457788999999952 35566776 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ +||++++.+|+
T Consensus 154 ~qrv~laral~~~p~ 168 (253)
T TIGR02323 154 QQRLQIARNLVTRPR 168 (253)
T ss_pred HHHHHHHHHHhcCCC
Confidence 3 99999999986
No 217
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=3.3e-21 Score=136.78 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=95.1
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++. ++ +++++|+|+||||||||+++|+|+.+|++|++.+++ .++.. . ..+.++
T Consensus 2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~i~~-~-----~~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN-CNINN-I-----AKPYCT 73 (195)
T ss_pred eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-cccCh-h-----hhhhEE
Confidence 789999 9997765544 76 789999999999999999999999999999999987 33211 0 123578
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
+++|.+ .+++..|+.+|+.+... .. + ..+++.++++.+++.. ..+..+|+ |+ ++|++
T Consensus 74 ~~~~~~---------~~~~~~tv~~~l~~~~~--~~--~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 74 YIGHNL---------GLKLEMTVFENLKFWSE--IY--N---SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARL 137 (195)
T ss_pred eccCCc---------CCCccCCHHHHHHHHHH--hc--c---cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHH
Confidence 888764 24456788888866421 11 1 2356778889998864 34566776 33 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 138 l~~~p~ 143 (195)
T PRK13541 138 IACQSD 143 (195)
T ss_pred HhcCCC
Confidence 999986
No 218
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.2e-21 Score=143.41 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=99.9
Q ss_pred EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHHhhCCC
Q psy17514 3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIYKNGQA 71 (159)
Q Consensus 3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~~~~~~ 71 (159)
+..|+++|+ +.|++..+|.+++ +++++|+|+||||||||+++|+|+++|+ .|++.++| .++.......
T Consensus 5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g-~~i~~~~~~~ 83 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN-QNIYERRVNL 83 (261)
T ss_pred cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC-EEhhccccch
Confidence 457999999 9998877888887 7899999999999999999999999985 67777776 3321101111
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEE
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLI 144 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~ 144 (159)
...+..+++++|++ .+++ .|+.+|+.+... ...........+.+.++++.+++. ...+..+|
T Consensus 84 ~~~~~~i~~~~q~~---------~l~~-~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 152 (261)
T PRK14258 84 NRLRRQVSMVHPKP---------NLFP-MSVYDNVAYGVK-IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLS 152 (261)
T ss_pred HHhhccEEEEecCC---------ccCc-ccHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 12356799999985 3555 688888865421 000001111234567888888873 13456777
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |. ++|++++.+|+
T Consensus 153 gGq~qrv~laral~~~p~ 170 (261)
T PRK14258 153 GGQQQRLCIARALAVKPK 170 (261)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 7 33 99999999986
No 219
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.7e-21 Score=158.01 Aligned_cols=146 Identities=15% Similarity=0.187 Sum_probs=103.1
Q ss_pred EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH------HHHHhh
Q psy17514 5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ------ELIYKN 68 (159)
Q Consensus 5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~------~~~~~~ 68 (159)
.|+++|+ +.|+. ..++++++ |++++|+||||||||||+++|+|+++|++|.|.+++.. ++....
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 4899999 99963 46888887 79999999999999999999999999999998776520 000000
Q ss_pred C-C----CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc------c
Q psy17514 69 G-Q----AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN------V 137 (159)
Q Consensus 69 ~-~----~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~ 137 (159)
. . ....++.|+++||++.. .+++.+||.+|+.++....... ......+++.++++.++|. .
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~-------~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMT-------SLNPVFTVGEQIAESIRLHQGA-SREEAMVEAKRMLDQVRIPEAQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchh-------hcCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHCCCCChhhHHh
Confidence 0 0 00112479999998621 3566789999987753210000 1222346788999999994 2
Q ss_pred CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 138 NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 138 ~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
.++.+||+ |+ +||++|+.+|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCC
Confidence 56788888 33 99999999996
No 220
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.8e-21 Score=143.59 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=101.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhH-----HHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL-----QELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~-----~~~~~~~~~~~~ 73 (159)
.|.++|+ ++|+++.++.+++ +++++|+||||||||||+++|+|+..|++|++.++|. .++... ....
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~--~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI--DAIK 87 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC--CHHH
Confidence 4899999 9999989999988 6899999999999999999999999999877765541 111100 0011
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.+..+++++|++ .+++.+|+.+|+.++... ..........+++.++++.+++.. ..+..+|+
T Consensus 88 ~~~~i~~~~q~~---------~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 157 (257)
T PRK14246 88 LRKEVGMVFQQP---------NPFPHLSIYDNIAYPLKS-HGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157 (257)
T ss_pred HhcceEEEccCC---------ccCCCCcHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence 356799999985 366777999998765210 000111122356788889998851 45566776
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +|||+++.+|+
T Consensus 158 ~~qrl~laral~~~P~ 173 (257)
T PRK14246 158 QQQRLTIARALALKPK 173 (257)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 33 99999999996
No 221
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.3e-21 Score=144.16 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=99.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ |++++|+||||||||||+++|+|++.+ ++|++.++| .++.........
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g-~~i~~~~~~~~~ 103 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG-QNIYDKKVDVAE 103 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC-EECcccccCHHH
Confidence 5899999 9998778888887 789999999999999999999999873 799999887 332110001112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.++.+++++|++ .+++. |+.+|+.+... ...........+++.++++.+++.. ..+..+|+
T Consensus 104 ~~~~i~~v~q~~---------~l~~~-tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 104 LRRRVGMVFQRP---------NPFPK-SIYENVVYGLR-LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGG 172 (272)
T ss_pred HhccEEEEecCC---------ccCcc-cHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHH
Confidence 356899999985 35554 88888865421 0100011112345777888888742 34567777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +|||+++.+|+
T Consensus 173 q~qrv~laral~~~p~ 188 (272)
T PRK14236 173 QQQRLVIARAIAIEPE 188 (272)
T ss_pred HHHHHHHHHHHHCCCC
Confidence 33 99999999986
No 222
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.2e-21 Score=145.47 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=99.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..+|.+++ |++++|+|+|||||||||++|+|++. |++|+|+++| .++.........
T Consensus 45 ~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g-~~i~~~~~~~~~ 123 (305)
T PRK14264 45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG-QDIYQDGVNLVE 123 (305)
T ss_pred eEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC-EEcccccccHHH
Confidence 4889999 9998888888887 78999999999999999999999985 5899999887 332110100111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE----------EECCE-EeCHHHHHHHHHhcCcc------
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY----------MINGS-SVNPKRVSDLFSSVNLN------ 136 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~----------~~~~~-~~~~~~~~~~l~~~~l~------ 136 (159)
.+..++|++|++ .+++ .|+.+|+.++..... ..... ....+++.++++.+++.
T Consensus 124 ~~~~i~~v~q~~---------~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 124 LRKRVGMVFQSP---------NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred HhhceEEEccCC---------cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 346799999985 3455 388888876421100 00011 11234677888888873
Q ss_pred -cCCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 137 -VNNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 137 -~~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
...+..+|+ |+ +||++|+.+|+
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~ 220 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPE 220 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCC
Confidence 145677777 33 99999999986
No 223
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.81 E-value=4.6e-21 Score=157.07 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=102.0
Q ss_pred EEEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.++++|+ .+|+.. .+|.++| |+.++|+|+||||||||++.|.|++.|..|+|+++| .|+...+. ...|+
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg-~dl~~i~~--~~lR~ 547 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG-VDLNDIDL--ASLRR 547 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EeHHhcCH--HHHHh
Confidence 5899999 999765 5788887 789999999999999999999999999999999998 44432221 22578
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++|.|++ .+| +-|++||+.++. .....+++.+++...+... +.-..
T Consensus 548 ~ig~V~Q~~---------~Lf-~gSI~eNi~l~~--------p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~ 609 (709)
T COG2274 548 QVGYVLQDP---------FLF-SGSIRENIALGN--------PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN 609 (709)
T ss_pred heeEEcccc---------hhh-cCcHHHHHhcCC--------CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence 999999996 233 348999998863 2234467777776666543 23456
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +|||++..+|+
T Consensus 610 LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 610 LSGGQRQRLALARALLSKPK 629 (709)
T ss_pred CCHHHHHHHHHHHHhccCCC
Confidence 777 54 99999999996
No 224
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2e-21 Score=144.32 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=96.8
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ |++++|+|+||||||||+++|+|++. |++|+|.++| .++.........
T Consensus 24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~ 102 (271)
T PRK14238 24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD-QNIFDKSYSVEE 102 (271)
T ss_pred EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC-EEcccccccHHH
Confidence 4899999 9998877888887 78999999999999999999999987 5899999887 332110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc----cc---CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL----NV---NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~---~~~~~l~~- 145 (159)
.++.++|++|++ .+++ .|+.+|+.++... ............+.++++.+++ .. ..+..+|+
T Consensus 103 ~~~~i~~v~q~~---------~~~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgG 171 (271)
T PRK14238 103 LRTNVGMVFQKP---------NPFP-KSIYDNVTYGPKI-HGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGG 171 (271)
T ss_pred HhhhEEEEecCC---------cccc-ccHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHH
Confidence 356799999985 3454 4888988764210 1111111112345666666643 21 45667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++|+.+|+
T Consensus 172 e~qrv~laraL~~~p~ 187 (271)
T PRK14238 172 QQQRLCIARCLAIEPD 187 (271)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 33 99999999986
No 225
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.5e-21 Score=144.18 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=99.1
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|+++.++.+++ +++++|+||||||||||+++|+|+++| ++|+|.+++ .++... .....
T Consensus 21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g-~~i~~~-~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG-RSIFNY-RDVLE 98 (276)
T ss_pred EEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC-EEcccc-chhHH
Confidence 4899999 9999888888888 689999999999999999999999985 689999887 222110 00111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.+..++|++|++ .+++ .|+.+|+.++... ..........+.+.++++.+++.. ..+..+|+
T Consensus 99 ~~~~i~~v~q~~---------~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG 167 (276)
T PRK14271 99 FRRRVGMLFQRP---------NPFP-MSIMDNVLAGVRA-HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG 167 (276)
T ss_pred HhhheEEeccCC---------ccCC-ccHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence 356799999985 3455 6888888764210 000011111234567788888852 34567777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|. +|||+++.+|+
T Consensus 168 q~qrl~LAral~~~p~ 183 (276)
T PRK14271 168 QQQLLCLARTLAVNPE 183 (276)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999985
No 226
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.81 E-value=3.8e-21 Score=138.74 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=95.5
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|++ ..++.+++ +++++|+||||||||||+++|+|+.+|++|++.+++ .++.. .. ....++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~-~~-~~~~~~ 78 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDG-TDIRQ-LD-PADLRR 78 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECC-EEhHH-CC-HHHHHh
Confidence 3789999 89975 45788877 789999999999999999999999999999999887 33211 01 011245
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CC-----------Cee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NN-----------PHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~-----------~~~ 142 (159)
.+++++|++ .+++ .|+.+|+.+... . ...+.+.++++.+++.. .. +..
T Consensus 79 ~i~~~~q~~---------~~~~-~tv~e~l~~~~~--~------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (220)
T cd03245 79 NIGYVPQDV---------TLFY-GTLRDNITLGAP--L------ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRG 140 (220)
T ss_pred hEEEeCCCC---------cccc-chHHHHhhcCCC--C------CCHHHHHHHHHHcCcHHHHHhccccccceecCCCcc
Confidence 799999985 2444 488888766421 0 12345667788777754 22 246
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +||++++.+|+
T Consensus 141 LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 141 LSGGQRQAVALARALLNDPP 160 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 776 33 99999999986
No 227
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.81 E-value=2e-21 Score=172.06 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=106.9
Q ss_pred EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|+ ++.++++++ |++++|+||||||||||+++|+|++.|++|++++.| .++.. . ....++
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G-~dI~~-~--~~~~r~ 1003 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGG-KDIET-N--LDAVRQ 1003 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECC-EECcc-h--HHHHhh
Confidence 5899999 9995 567889888 799999999999999999999999999999999887 33311 0 111356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.+++++|++ .+++.+||.+++.+..+ .+........+++.++++.++|.. ..+..||+ |+ +|
T Consensus 1004 ~IG~~pQ~~---------~L~~~LTV~E~L~f~~~--lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1004 SLGMCPQHN---------ILFHHLTVAEHILFYAQ--LKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred cEEEEecCC---------cCCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 799999985 47788999999987532 111111223457889999999975 45678888 43 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|+|++.+|+
T Consensus 1073 ArALi~~Pk 1081 (2272)
T TIGR01257 1073 AIAFVGDAK 1081 (2272)
T ss_pred HHHHHcCCC
Confidence 999999986
No 228
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.6e-21 Score=140.26 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=95.4
Q ss_pred Ce-eeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEEEEEEE
Q psy17514 10 GF-KSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKASVTLTF 82 (159)
Q Consensus 10 ~~-~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~i~~v~ 82 (159)
|+ ++|+++.+ +++ .++++|+||||||||||+++|+|+++|++|++.++| .++..... .....++.+++++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~i~~~~ 81 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNG-TVLFDSRKKINLPPQQRKIGLVF 81 (214)
T ss_pred eeeEecCCeee--CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EecccccchhhhhhHhhcEEEEe
Confidence 88 89988754 665 378999999999999999999999999999999887 33211000 0011245799999
Q ss_pred EcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcC
Q psy17514 83 DNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNM 155 (159)
Q Consensus 83 q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~ 155 (159)
|++ .+++.+|+.+|+.+... .. ......+++.++++.+++.. ..+..+|+ |+ +||++++.
T Consensus 82 q~~---------~~~~~~t~~~~l~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 82 QQY---------ALFPHLNVRENLAFGLK--RK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cCC---------ccCCCCCHHHHHHHHHh--hC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 985 46667789998876422 10 11122356788999999965 45677777 33 99999999
Q ss_pred CCC
Q psy17514 156 KPH 158 (159)
Q Consensus 156 ~p~ 158 (159)
+|+
T Consensus 149 ~p~ 151 (214)
T cd03297 149 QPE 151 (214)
T ss_pred CCC
Confidence 996
No 229
>KOG0996|consensus
Probab=99.81 E-value=2.3e-19 Score=148.70 Aligned_cols=156 Identities=33% Similarity=0.567 Sum_probs=126.5
Q ss_pred eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCc-eeEEEEEE
Q psy17514 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAG-VTKASVTL 80 (159)
Q Consensus 2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~~~i~~ 80 (159)
++..|.++|||+|.+.+++-+|...+++||||||||||+++++|.+..+-.++.||-..+.++|+...... ...+.|.+
T Consensus 85 ~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh~S~~~~~l~SCsV~v 164 (1293)
T KOG0996|consen 85 MITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIHKSDGHPNLQSCSVEV 164 (1293)
T ss_pred eehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHhccCCCCCCcceeEEE
Confidence 46678999999999999999999999999999999999999999999999999999988778887443333 23578888
Q ss_pred EEEcCCCCCCCCCccCC--CeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCCC
Q psy17514 81 TFDNSDKKNCPIGYEND--NTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH 158 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p~ 158 (159)
-||.--+..... +... ..++|.+......++.|+++++....+.|..+|...|++.++.-+|..||.|..++.|+|+
T Consensus 165 hFq~iiD~~~~~-~E~vp~s~~~ItRtA~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~IA~MKPk 243 (1293)
T KOG0996|consen 165 HFQKIIDKPGGT-YEVVPDSEFTITRTAFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQIAMMKPK 243 (1293)
T ss_pred eeeeeeccCCCc-eeecCCCeeEEEehhhhCCCceEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHHHhcCCC
Confidence 888532110000 1122 2467877777667778999999999999999999999999888889999999999999995
No 230
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.8e-21 Score=134.14 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=70.1
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+++|++|++.+++ .++....+.....++.++
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG-EDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccchhHHHHhhcEE
Confidence 468899 8898878888887 689999999999999999999999999999999887 332110000112356799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISI 108 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~ 108 (159)
+++|++ .+++..|+.+|+.+
T Consensus 80 ~~~q~~---------~~~~~~t~~~~l~~ 99 (178)
T cd03229 80 MVFQDF---------ALFPHLTVLENIAL 99 (178)
T ss_pred EEecCC---------ccCCCCCHHHheee
Confidence 999985 35556677777654
No 231
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.81 E-value=4.1e-21 Score=151.39 Aligned_cols=148 Identities=19% Similarity=0.227 Sum_probs=110.0
Q ss_pred eEEEEEEeCe-eeecCC----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc----ccchhhhhHHHHHHh
Q psy17514 2 YIKSMVLDGF-KSYGTR----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ----VKQVRANTLQELIYK 67 (159)
Q Consensus 2 ~~~~l~l~~~-~~~~~~----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~----~g~i~~~~~~~~~~~ 67 (159)
+...|+++|+ ..|... .+++++| ||+++|+|+|||||||+..+|.|++++. .|+|.++| +++...
T Consensus 2 ~~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g-~dl~~l 80 (539)
T COG1123 2 MSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG-RDLLGL 80 (539)
T ss_pred CCceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECC-cchhcC
Confidence 3346999999 888643 5788888 7999999999999999999999999877 79999988 455332
Q ss_pred hC--CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---C--CC
Q psy17514 68 NG--QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---N--NP 140 (159)
Q Consensus 68 ~~--~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~--~~ 140 (159)
.. ....+.+.|+++||+|.. .+.|-+|+.++|.-........ ...+..+++.++|+.++|.+ . +|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~-------slnP~~tIg~Qi~E~~~~h~~~-~~~ea~~~a~elL~~Vgl~~~~~~~~yP 152 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMT-------SLNPVMTIGDQIREALRLHGKG-SRAEARKRAVELLEQVGLPDPERRDRYP 152 (539)
T ss_pred CHHHHHHhccccEEEEecCchh-------hcCchhhHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHcCCCChhhhccCC
Confidence 21 122346789999999853 3455567777665432211111 13445678899999999976 4 89
Q ss_pred eeEEe---Ch-hHhHhhcCCCC
Q psy17514 141 HFLIM---QG-RVTKVLNMKPH 158 (159)
Q Consensus 141 ~~l~~---q~-~ia~~l~~~p~ 158 (159)
.+||+ |+ .||++|+.+|+
T Consensus 153 heLSGG~rQRv~iAmALa~~P~ 174 (539)
T COG1123 153 HQLSGGMRQRVMIAMALALKPK 174 (539)
T ss_pred cccCchHHHHHHHHHHHhCCCC
Confidence 99999 44 99999999996
No 232
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.9e-21 Score=142.05 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=97.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..+|.+++ +++++|+||||||||||+++|+|++.+ ++|+|.++| .++.........
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~l~~~~~~~~~ 98 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD-RNIYDSQINSVK 98 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC-EecccccchhHH
Confidence 5899999 9998878888888 789999999999999999999999863 589999887 333110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.+..|+++||++ .+++. ++.+|+.++.. .... .....+.+.++++.+++. ...+..+|+
T Consensus 99 ~~~~i~~v~q~~---------~l~~~-tv~~nl~~~~~--~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 165 (274)
T PRK14265 99 LRRQVGMVFQRP---------NPFPK-SIYENIAFAPR--ANGY-KGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG 165 (274)
T ss_pred HhhcEEEEccCC---------ccccc-cHHHHHHhHHH--hcCc-hHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence 356799999985 34543 88888876422 1100 111234456677777763 145567776
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ ++|++++.+|+
T Consensus 166 q~qrv~LAraL~~~p~ 181 (274)
T PRK14265 166 QQQRLCIARAIAMKPD 181 (274)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 33 99999999986
No 233
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=9.9e-21 Score=136.66 Aligned_cols=132 Identities=13% Similarity=0.149 Sum_probs=94.4
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|+. +.++++++ +++++|+||||||||||+++|+|+..|++|++.+++ .++... . ....++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~-~-~~~~~~ 78 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG-VDISKI-G-LHDLRS 78 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC-EEhHhC-C-HHHHhh
Confidence 4789999 99964 36888887 689999999999999999999999999999999887 333211 1 111356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.+++++|++ .+++ .|+.+|+.+... ...+++.+.++.+++.. ..+..
T Consensus 79 ~i~~~~q~~---------~l~~-~tv~enl~~~~~---------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 139 (221)
T cd03244 79 RISIIPQDP---------VLFS-GTIRSNLDPFGE---------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGEN 139 (221)
T ss_pred hEEEECCCC---------cccc-chHHHHhCcCCC---------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCc
Confidence 799999985 2444 488888764311 12345566666665532 24566
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |. ++|++++.+|+
T Consensus 140 LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 140 LSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 766 33 99999999985
No 234
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.2e-21 Score=141.21 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=96.8
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--C---cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--I---QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~---~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ +.|++..++.+++ +++++|+|+||||||||+++|+|+.. | ++|+|.++| .++.........
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g-~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG-QNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC-EEcccccccHHH
Confidence 4899999 9998878899887 68999999999999999999999875 4 489999887 332110000111
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------cCCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------VNNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~- 145 (159)
.++.+++++|++ .+++ .|+.+|+.+.... ..........+++.+.++.+++. ...+..+|+
T Consensus 84 ~~~~i~~~~q~~---------~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 152 (252)
T PRK14255 84 LRKQVGMVFQQP---------NPFP-FSIYENVIYGLRL-AGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGG 152 (252)
T ss_pred hcCeEEEEECCC---------ccCC-CcHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHH
Confidence 346799999985 3455 5888888754210 00001111123456677777652 135667777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +||++++.+|+
T Consensus 153 q~qrv~laral~~~p~ 168 (252)
T PRK14255 153 QQQRVCIARVLAVKPD 168 (252)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 33 99999999986
No 235
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.80 E-value=6.7e-21 Score=157.38 Aligned_cols=132 Identities=19% Similarity=0.167 Sum_probs=101.2
Q ss_pred EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.++++|+ .+|+ +..+|+++| |+.++|+|+||||||||+++|+|++.|++|+|.++| .++...+. ...++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg-~~i~~~~~--~~lr~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDG-QDLAGLDV--QAVRR 527 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC-EEcCcCCH--HHHHh
Confidence 5899999 9995 356888888 799999999999999999999999999999999998 34321111 12467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|++ .+|+ -|+++|+.++. . .+.+++.++++.+++.. +.-..
T Consensus 528 ~i~~v~Q~~---------~lf~-gTI~eNi~~~~--------~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~ 588 (686)
T TIGR03797 528 QLGVVLQNG---------RLMS-GSIFENIAGGA--------P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588 (686)
T ss_pred ccEEEccCC---------ccCc-ccHHHHHhcCC--------C-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 899999996 3554 39999998752 1 34567788888877753 12245
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 589 LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 666 43 99999999996
No 236
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=3.3e-21 Score=155.04 Aligned_cols=146 Identities=17% Similarity=0.232 Sum_probs=100.4
Q ss_pred EEEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhh
Q psy17514 4 KSMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKN 68 (159)
Q Consensus 4 ~~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~ 68 (159)
..|+++|+ +.|++ ..++++++ |++++|+||||||||||+++|+|+++| ++|+|.++| .++....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g-~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG-ESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC-EecccCC
Confidence 35899999 99963 46888888 789999999999999999999999986 689998887 3321100
Q ss_pred CC--CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------CCC
Q psy17514 69 GQ--AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------NNP 140 (159)
Q Consensus 69 ~~--~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~ 140 (159)
.. ....++.++++||++.. .+++.+++.+++.+........ ......+++.++++.++|.. ..+
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMV-------SLNPLHTLEKQLYEVLSLHRGM-RREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred HHHHHHHhcCceEEEecCchh-------hcCchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 00 00123579999998521 1344557777665321100000 11223467889999999953 457
Q ss_pred eeEEe-Ch---hHhHhhcCCCC
Q psy17514 141 HFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 141 ~~l~~-q~---~ia~~l~~~p~ 158 (159)
.+||+ |+ +||++|+.+|+
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~ 176 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPE 176 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCC
Confidence 78888 33 99999999996
No 237
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=4.6e-20 Score=131.73 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=86.6
Q ss_pred EEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 6 MVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|+++|+ +.|++. .++++++ +++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 468899 899764 6888887 789999999999999999999999999999998765
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCC
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNP 140 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~ 140 (159)
.|+|++|++ .++ ..|+.+|+.++.. + + .+...+.++.+++ .. ..+
T Consensus 67 --~i~~~~q~~---------~l~-~~t~~enl~~~~~--~--~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 125 (204)
T cd03250 67 --SIAYVSQEP---------WIQ-NGTIRENILFGKP--F--D-----EERYEKVIKACALEPDLEILPDGDLTEIGEKG 125 (204)
T ss_pred --EEEEEecCc---------hhc-cCcHHHHhccCCC--c--C-----HHHHHHHHHHcCcHHHHHhccCcccceecCCC
Confidence 589999986 244 3589999887532 1 1 1223333333322 11 234
Q ss_pred eeEEe-Ch---hHhHhhcCCCC
Q psy17514 141 HFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 141 ~~l~~-q~---~ia~~l~~~p~ 158 (159)
..+|+ |+ ++||+++.+|+
T Consensus 126 ~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 126 INLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred CcCCHHHHHHHHHHHHHhcCCC
Confidence 56666 33 99999999996
No 238
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.80 E-value=1e-20 Score=156.80 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=101.2
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|++ +.+|+++| |+.++|+||||||||||+++|+|+++|++|+|.++| .++...+. ...++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg-~~i~~~~~--~~lr~ 553 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG-IPREEIPR--EVLAN 553 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EeHHHCCH--HHHHh
Confidence 5899999 99974 56888888 789999999999999999999999999999999998 44432111 12478
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|++ .+|+ -|+++|+.++. .....+++.++++..++.. +....
T Consensus 554 ~i~~v~Q~~---------~lf~-gTi~eNi~l~~--------~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~ 615 (710)
T TIGR03796 554 SVAMVDQDI---------FLFE-GTVRDNLTLWD--------PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN 615 (710)
T ss_pred heeEEecCC---------hhhh-ccHHHHhhCCC--------CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCC
Confidence 899999996 3444 49999998752 1234567777777766643 23345
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 616 LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCC
Confidence 666 43 99999999986
No 239
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.80 E-value=7.2e-21 Score=137.85 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=96.1
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ +.|++ ..++.+++ +++++|+||||||||||+++|+|+++|++|++.++| .++.... ....+
T Consensus 11 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~~~--~~~~~ 87 (226)
T cd03248 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG-KPISQYE--HKYLH 87 (226)
T ss_pred eEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC-CchHHcC--HHHHH
Confidence 5899999 99964 35788887 789999999999999999999999999999999887 3332111 11234
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhc--Cccc---CCCeeEEe-Ch
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSV--NLNV---NNPHFLIM-QG 147 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~--~l~~---~~~~~l~~-q~ 147 (159)
+.+++++|++ .+++ .|+.+|+.++... ..... .......+.++++.+ ++.. ..+..+|+ |.
T Consensus 88 ~~i~~~~q~~---------~l~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~ 156 (226)
T cd03248 88 SKVSLVGQEP---------VLFA-RSLQDNIAYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK 156 (226)
T ss_pred hhEEEEeccc---------HHHh-hhHHHHhccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHH
Confidence 6799999985 3444 4888888764220 00000 000011235667777 6654 45677777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 157 qrv~laral~~~p~ 170 (226)
T cd03248 157 QRVAIARALIRNPQ 170 (226)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999986
No 240
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=7.1e-21 Score=138.10 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=92.1
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.|++ ..++++++ |++++|+|||||||||||++|+|+++|++|+|.+++ .++.... ....+..
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~--~~~~~~~ 78 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDG-IDIRDIS--RKSLRSM 78 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC-EeHHHcC--HHHHhhh
Confidence 4789999 99974 46788887 689999999999999999999999999999999887 3332111 1113456
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~~~l 143 (159)
++|++|++ .+++. |+.+|+.+... .....++.++++.+++ .. ..+..+
T Consensus 79 i~~~~q~~---------~~~~~-tv~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 140 (229)
T cd03254 79 IGVVLQDT---------FLFSG-TIMENIRLGRP--------NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNL 140 (229)
T ss_pred EEEecCCc---------hhhhh-HHHHHHhccCC--------CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcC
Confidence 99999985 34444 88888766421 0112334444444333 21 234667
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ ++|++++.+|+
T Consensus 141 S~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 141 SQGERQLLAIARAMLRDPK 159 (229)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 76 33 99999999996
No 241
>KOG0057|consensus
Probab=99.80 E-value=3.7e-20 Score=144.67 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=105.2
Q ss_pred EEEEeCe-eeecCCe-eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGTRV-EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~-~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ ..|++++ +|+++| |+-++|+|+|||||||+|++|-.+.. .+|+|+++| +++..... ...|+.
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG-~dik~~~~--~SlR~~ 426 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDG-QDIKEVSL--ESLRQS 426 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECC-eeHhhhCh--HHhhhh
Confidence 4899999 9998776 999998 67899999999999999999999999 899999999 56543222 225788
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
|++|+|+. .+|.+ ||..||.++. .....+++.+.++.+++.+ +.-..+
T Consensus 427 Ig~VPQd~---------~LFnd-TIl~NI~YGn--------~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L 488 (591)
T KOG0057|consen 427 IGVVPQDS---------VLFND-TILYNIKYGN--------PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488 (591)
T ss_pred eeEeCCcc---------cccch-hHHHHhhcCC--------CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc
Confidence 99999985 45554 8999998873 3456688999999999865 123456
Q ss_pred Ee---Ch-hHhHhhcCCCC
Q psy17514 144 IM---QG-RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~---q~-~ia~~l~~~p~ 158 (159)
|+ |+ +++|++..+|+
T Consensus 489 SGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 489 SGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred ccchHHHHHHHHHHhcCCC
Confidence 66 33 99999999986
No 242
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.3e-20 Score=139.33 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=99.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.+.+++. +.|++..++++++ +++++|+|+||||||||+++|+|++.| ++|+|.++| .++.........
T Consensus 8 ~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g-~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG-QDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC-EeccccccchHh
Confidence 4678888 7888878888887 789999999999999999999999976 689999988 343210111112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------CCCeeEEe-
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------NNPHFLIM- 145 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~- 145 (159)
.++.+++++|++ .++ .+|+.+|+.++.. +.. .......++.++++.+++.. ..+..+|+
T Consensus 87 ~~~~i~~v~q~~---------~~~-~~tv~enl~~~~~--~~~-~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 153 (261)
T PRK14263 87 VRRYIGMVFQQP---------NPF-SMSIFDNVAFGLR--LNR-YKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG 153 (261)
T ss_pred hhhceEEEecCC---------ccc-cccHHHHHHHHHh--hcC-chHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 356799999985 244 4788899876532 111 11122356788899998843 23456666
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|. ++||+++.+|+
T Consensus 154 ~~qrv~laral~~~p~ 169 (261)
T PRK14263 154 QQQRLCIARAIATEPE 169 (261)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 32 99999999986
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=4.2e-21 Score=154.43 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=101.9
Q ss_pred EEEEeCe-eeec-----------CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh
Q psy17514 5 SMVLDGF-KSYG-----------TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK 67 (159)
Q Consensus 5 ~l~l~~~-~~~~-----------~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~ 67 (159)
.|+++|+ +.|+ ++.+|+++| |++++|+||||||||||+++|+|+++ ++|+|+++| +++...
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g-~~i~~~ 352 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDG-QPLHNL 352 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECC-EEcccc
Confidence 3789999 9995 356888888 78999999999999999999999985 899999887 333110
Q ss_pred hCCC-ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCee
Q psy17514 68 NGQA-GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHF 142 (159)
Q Consensus 68 ~~~~-~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~ 142 (159)
.... ...++.++|+||++. ..+++.+||.+|+.++..............+++.++++.++|. . ..+..
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~-------~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 425 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPN-------SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE 425 (529)
T ss_pred chhhHHHhhhceEEEEeCch-------hhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCcc
Confidence 1000 012457999999852 1356778999998764220000001112235678899999995 2 45778
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
||+ |+ +||++++.+|+
T Consensus 426 LSgG~~qrv~la~al~~~p~ 445 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPS 445 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 888 33 99999999986
No 244
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.80 E-value=3.3e-20 Score=149.94 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=98.0
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|+++.+|.+++ |++++|+|||||||||||++|+|++.|++|+|++.+ ...|
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~--------------~~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE--------------TVKL 387 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC--------------ceEE
Confidence 4899999 9998888898888 789999999999999999999999999999998732 1269
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia 150 (159)
+|++|++. .+++.+|+.+++.++... ... .. ...++.++++.+++.. ..+..+|+ |+ +||
T Consensus 388 ~~v~q~~~--------~~~~~~tv~e~l~~~~~~-~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la 455 (552)
T TIGR03719 388 AYVDQSRD--------ALDPNKTVWEEISGGLDI-IQL-GK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA 455 (552)
T ss_pred EEEeCCcc--------ccCCCCcHHHHHHhhccc-ccc-Cc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 99999741 256667899988765320 111 11 1234667899999952 35677777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 456 ~al~~~p~ 463 (552)
T TIGR03719 456 KTLKSGGN 463 (552)
T ss_pred HHHhhCCC
Confidence 99999986
No 245
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=7.8e-21 Score=132.51 Aligned_cols=88 Identities=15% Similarity=0.295 Sum_probs=67.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|++..++++++ +++++|+||||||||||+++|+|+++|.+|++.+++ .++.... ...++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~~~~---~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG-KDIKKEP---EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEcccch---HhhhccEE
Confidence 468899 8888777888887 689999999999999999999999999999999887 3321101 12346799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEE
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQI 106 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i 106 (159)
+++|++ .+++.+|+.+|+
T Consensus 77 ~~~q~~---------~~~~~~tv~~~~ 94 (173)
T cd03230 77 YLPEEP---------SLYENLTVRENL 94 (173)
T ss_pred EEecCC---------ccccCCcHHHHh
Confidence 999985 345555676665
No 246
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.80 E-value=2.9e-21 Score=140.88 Aligned_cols=133 Identities=15% Similarity=0.137 Sum_probs=91.9
Q ss_pred eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCC
Q psy17514 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSD 86 (159)
Q Consensus 12 ~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 86 (159)
+.|+.+++|.+++ +++++|+|||||||||||++|+|+++|++|+|.+++ .+... . ....++.+++++|...
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~~~~-~--~~~~~~~i~~~~~~~~ 104 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-LVPWK-R--RKKFLRRIGVVFGQKT 104 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-EEccc-c--chhhcccEEEEcCCcc
Confidence 4455667888887 689999999999999999999999999999999887 22211 1 1123567899985421
Q ss_pred CCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 87 KKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 87 ~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
.+++.+|+.+|+.+... ..........+++.++++.+++.. ..+..+|+ |+ ++|++++.+|+
T Consensus 105 --------~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 173 (236)
T cd03267 105 --------QLWWDLPVIDSFYLLAA--IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPE 173 (236)
T ss_pred --------ccCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 35566788888765321 110011122345678889999865 34566776 33 99999999986
No 247
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.80 E-value=9.7e-21 Score=156.90 Aligned_cols=134 Identities=13% Similarity=0.139 Sum_probs=101.1
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ .+|+ +..+|++++ |+.++|+||||||||||+++|+|++.|++|+|.++| .++...+. ...++.
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg-~~i~~~~~--~~lr~~ 549 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG-FSLKDIDR--HTLRQF 549 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC-EEHHHcCH--HHHHHh
Confidence 4899999 9996 457888888 789999999999999999999999999999999998 44432121 124678
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
|++++|++ .+|+ -|+++|+.++.. ...+.+++.++++.+++.. +....+
T Consensus 550 i~~v~Q~~---------~lf~-gTI~eNi~l~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 550 INYLPQEP---------YIFS-GSILENLLLGAK-------ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred eEEEecCc---------eehh-HHHHHHHhccCC-------CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 99999996 3554 499999988621 1234566777777666532 233556
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||++..+|+
T Consensus 613 SgGQrQRialARall~~p~ 631 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSK 631 (708)
T ss_pred CHHHHHHHHHHHHHhhCCC
Confidence 66 43 99999999996
No 248
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.3e-20 Score=137.23 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=91.5
Q ss_pred EEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|++. .++.+++ +++++|+||||||||||+++|+|+++|++|++.++| .++.. .. ....++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~-~~~~~~~ 77 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDG-HDVRD-YT-LASLRRQ 77 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECC-EEhhh-CC-HHHHHhh
Confidence 468899 899764 6778777 789999999999999999999999999999999887 33211 11 1112457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHH-----HHHHHHHhc--Cccc---CCCeeEEe-C
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPK-----RVSDLFSSV--NLNV---NNPHFLIM-Q 146 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~---~~~~~l~~-q 146 (159)
+++++|++ .+++ .|+.+|+.+.... + ......+ .+.++++.+ ++.. ..+..+|+ |
T Consensus 78 i~~~~q~~---------~~~~-~tv~enl~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~ 143 (234)
T cd03251 78 IGLVSQDV---------FLFN-DTVAENIAYGRPG-A---TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQ 143 (234)
T ss_pred EEEeCCCC---------eecc-ccHHHHhhccCCC-C---CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHH
Confidence 99999885 3444 5888888765321 0 1000000 123344444 3432 34567777 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ ++|++++.+|+
T Consensus 144 ~qrv~la~al~~~p~ 158 (234)
T cd03251 144 RQRIAIARALLKDPP 158 (234)
T ss_pred HHHHHHHHHHhcCCC
Confidence 3 99999999986
No 249
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.4e-20 Score=148.56 Aligned_cols=126 Identities=16% Similarity=0.204 Sum_probs=97.0
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|+++.++.+++ |++++|+|||||||||||++|+|++.|++|+|.+.+ +..+
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------~~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE--------------NANI 384 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC--------------ceEE
Confidence 5899999 9998888888887 789999999999999999999999999999998754 2469
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~ia 150 (159)
+|++|++.. .+++.+|+.+++.... ......+++.++++.+++. . ..+..+|+ |+ +||
T Consensus 385 ~~~~q~~~~-------~~~~~~t~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 450 (530)
T PRK15064 385 GYYAQDHAY-------DFENDLTLFDWMSQWR-------QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG 450 (530)
T ss_pred EEEcccccc-------cCCCCCcHHHHHHHhc-------cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence 999997521 1344567777654210 0112346788999999984 2 45778877 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 451 ~al~~~p~ 458 (530)
T PRK15064 451 KLMMQKPN 458 (530)
T ss_pred HHHhcCCC
Confidence 99999986
No 250
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.80 E-value=1.5e-20 Score=139.78 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=96.6
Q ss_pred EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|. ...+|++++ |++++|+|+||||||||+++|+|++. .+|+|+++| .++.... ....++
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g-~~i~~~~--~~~lr~ 77 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDG-VSWNSVP--LQKWRK 77 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECC-EEhhhCC--HHHHhh
Confidence 4789999 9994 456888888 78999999999999999999999998 789999988 3332111 112356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCee-----------
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHF----------- 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~----------- 142 (159)
.|+|++|++ .+++ .|+.+|+.... ....+++.++++.++|.. ..|..
T Consensus 78 ~i~~v~q~~---------~lf~-~tv~~nl~~~~---------~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~ 138 (275)
T cd03289 78 AFGVIPQKV---------FIFS-GTFRKNLDPYG---------KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCV 138 (275)
T ss_pred hEEEECCCc---------ccch-hhHHHHhhhcc---------CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCC
Confidence 799999986 3555 38888885321 123457788888898864 33433
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |. ++||+++.+|+
T Consensus 139 LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 666 33 99999999986
No 251
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.80 E-value=1.6e-20 Score=136.99 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=90.9
Q ss_pred EEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|+. ..++.+++ +++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ....++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~-~~~~~~~ 77 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDG-HDLAL-AD-PAWLRRQ 77 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC-eehHh-cC-HHHHhhc
Confidence 467899 88863 45788877 789999999999999999999999999999999988 33321 11 1113467
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHH---------HHHHHhc--Cccc---CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRV---------SDLFSSV--NLNV---NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~---~~~~~l 143 (159)
+++++|++ .+++ .|+.+|+.+... .. ....+ .++++.+ ++.. ..+..+
T Consensus 78 i~~~~q~~---------~~~~-~tv~~nl~~~~~------~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~L 139 (237)
T cd03252 78 VGVVLQEN---------VLFN-RSIRDNIALADP------GM--SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL 139 (237)
T ss_pred EEEEcCCc---------hhcc-chHHHHhhccCC------CC--CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcC
Confidence 99999985 2443 589999876431 00 11222 2333333 3322 356677
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||+++.+|+
T Consensus 140 SgG~~qrv~laral~~~p~ 158 (237)
T cd03252 140 SGGQRQRIAIARALIHNPR 158 (237)
T ss_pred CHHHHHHHHHHHHHhhCCC
Confidence 77 33 99999999986
No 252
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=7.7e-21 Score=154.60 Aligned_cols=132 Identities=11% Similarity=0.116 Sum_probs=98.5
Q ss_pred EEEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.++++|+ ..| ++.++|++++ |+.++|+||||||||||++.|+|++ |.+|+|.++| .++...+. ...++.
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g-~~i~~~~~--~~lr~~ 424 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKING-IELRELDP--ESWRKH 424 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECC-EecccCCH--HHHHhh
Confidence 4889999 544 5667888887 7999999999999999999999999 8999999988 44321111 224678
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
|++|+|++ .+|+ -|+++||.++. ...+++++.++++..++.+ +.-..|
T Consensus 425 i~~v~Q~~---------~LF~-~TI~eNI~~g~--------~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~L 486 (588)
T PRK11174 425 LSWVGQNP---------QLPH-GTLRDNVLLGN--------PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486 (588)
T ss_pred eEEecCCC---------cCCC-cCHHHHhhcCC--------CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCC
Confidence 99999996 3554 49999998862 1234567777777666532 233457
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||++..+|+
T Consensus 487 SGGQrQRialARAll~~~~ 505 (588)
T PRK11174 487 SVGQAQRLALARALLQPCQ 505 (588)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 77 43 99999999986
No 253
>KOG0058|consensus
Probab=99.79 E-value=4.2e-20 Score=148.37 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=103.2
Q ss_pred EEEEeCe-eeecCC---eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGTR---VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~~---~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ ..|..+ ++|++++ |+++|||||||+||||+...|-.++.|++|+|..+| .++...+. .+.+
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG-~~i~~~~~--~~lr 541 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG-VPISDINH--KYLR 541 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC-eehhhcCH--HHHH
Confidence 5899999 999765 5788887 799999999999999999999999999999999999 56543232 3357
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-------c-------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-------V-------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-------~~~~ 141 (159)
++|++|-|+| .+|. -||.|||.++.. ..+++++....+..+-. . ++-.
T Consensus 542 ~~Ig~V~QEP---------vLFs-~sI~eNI~YG~~--------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 542 RKIGLVGQEP---------VLFS-GSIRENIAYGLD--------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred HHeeeeeccc---------eeec-ccHHHHHhcCCC--------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 8999999997 3454 489999999853 33456666555554332 1 3456
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
++|+ |+ +|||||..+|.
T Consensus 604 qLSGGQKQRIAIARALlr~P~ 624 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPR 624 (716)
T ss_pred cccchHHHHHHHHHHHhcCCC
Confidence 8888 54 99999999995
No 254
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.79 E-value=1.3e-20 Score=153.19 Aligned_cols=134 Identities=15% Similarity=0.142 Sum_probs=100.1
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.++++|+ .+|++ ..+|++++ |+.++|+|+||||||||+++|+|+++|++|+|+++| .++...+. ...+.
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g-~~i~~~~~--~~~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG-HDLRDYTL--ASLRN 417 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC-EEhhhcCH--HHHHh
Confidence 5899999 99964 56888887 789999999999999999999999999999999988 34321111 12467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|++ .+|+ -|+++|+.++.. .....+++.++++.+++.. +....
T Consensus 418 ~i~~v~Q~~---------~lf~-~Ti~~Ni~~~~~-------~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~ 480 (582)
T PRK11176 418 QVALVSQNV---------HLFN-DTIANNIAYART-------EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL 480 (582)
T ss_pred hceEEccCc---------eeec-chHHHHHhcCCC-------CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCc
Confidence 799999996 3454 499999987521 1134567777777776542 12244
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 481 LSGGqrQRi~LARall~~~~ 500 (582)
T PRK11176 481 LSGGQRQRIAIARALLRDSP 500 (582)
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 666 33 99999999986
No 255
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.79 E-value=4.7e-20 Score=149.11 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=98.1
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|+++.+|.+++ |++++|+||||||||||+++|+|+++|++|+|.+.+ ...|
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------~~~i 389 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE--------------TVKL 389 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC--------------ceEE
Confidence 4899999 9998888899888 789999999999999999999999999999998732 1259
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia 150 (159)
+|++|++. .+++.+|+.+|+.++.. .. +.......+.++++.+++.. ..+..+|+ |+ +||
T Consensus 390 ~~v~q~~~--------~~~~~~tv~e~l~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 390 AYVDQSRD--------ALDPNKTVWEEISGGLD--II--KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred EEEeCchh--------hcCCCCCHHHHHHhhcc--cc--cccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 99999741 35567789998876532 11 11111234567899999952 35677877 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 458 ~al~~~p~ 465 (556)
T PRK11819 458 KTLKQGGN 465 (556)
T ss_pred HHHhcCCC
Confidence 99999986
No 256
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=3.2e-20 Score=132.80 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=92.6
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|+. ..++++++ +++++|+|+||||||||+++|+|+..|++|++.+++ .++.. .. ....+.
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g-~~~~~-~~-~~~~~~ 82 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDG-IDIST-IP-LEDLRS 82 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECC-EEhHH-CC-HHHHHh
Confidence 5889999 88975 36788887 789999999999999999999999999999999987 33321 11 111346
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe-Ch---hHhHh
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-q~---~ia~~ 152 (159)
.|++++|++ .+++ .|+.+|+.+... ....++.+.++ +. .++..+|+ |. ++||+
T Consensus 83 ~i~~v~q~~---------~~~~-~tv~~~l~~~~~---------~~~~~~~~~l~---~~-~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 83 SLTIIPQDP---------TLFS-GTIRSNLDPFDE---------YSDEEIYGALR---VS-EGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred hEEEEecCC---------cccC-ccHHHHhcccCC---------CCHHHHHHHhh---cc-CCCCcCCHHHHHHHHHHHH
Confidence 799999985 2444 488888854211 12234445554 33 56777877 32 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
++.+|+
T Consensus 140 l~~~p~ 145 (207)
T cd03369 140 LLKRPR 145 (207)
T ss_pred HhhCCC
Confidence 999986
No 257
>KOG0018|consensus
Probab=99.79 E-value=1.7e-19 Score=148.50 Aligned_cols=142 Identities=35% Similarity=0.609 Sum_probs=117.7
Q ss_pred eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
.+..|++.|||+|.+.+++-++. .+++||||||||||++++||+++++-.++..|...++++++... .++.+.++
T Consensus 3 ~L~~lEieNFKSYkGh~~iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIyg~~----i~~~v~l~ 77 (1141)
T KOG0018|consen 3 RLLTLEIENFKSYKGHQVIGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIYGKP----IRKPVTLK 77 (1141)
T ss_pred ceeeeehhccccccCceeecCch-hceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhcCCc----cCCchhhe
Confidence 46789999999999998776653 89999999999999999999999999999999999899988322 34456678
Q ss_pred EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCCCC
Q psy17514 82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPHE 159 (159)
Q Consensus 82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p~~ 159 (159)
|+-++.. ..+..+.|. ++.+.|++++..++.+++..-|+..+|-.+..+.++.||++..+....|+|
T Consensus 78 Y~~~dg~----------~~~F~R~I~-~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkE 144 (1141)
T KOG0018|consen 78 YEEGDGE----------TRRFTRAIN-GGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKE 144 (1141)
T ss_pred eecCCch----------hhhhhhhhc-CCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHH
Confidence 8765422 234456666 777899999999999999999999999988788899999888888888865
No 258
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5.9e-21 Score=152.98 Aligned_cols=144 Identities=13% Similarity=0.155 Sum_probs=99.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|+ .++++++ |++++|+||||||||||+++|+|+++|++|+|+++| +++.. .......++.+
T Consensus 265 ~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g-~~~~~-~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG-KDISP-RSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC-EECCC-CCHHHHHHCCc
Confidence 4889999 6654 3678777 799999999999999999999999999999999987 33210 00001123569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---EE----ECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-C
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---YM----INGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-Q 146 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~~----~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q 146 (159)
+|++|++.. ..+++++|+.+|+.++.... +. ........+++.++++.++|. . ..+..||+ |
T Consensus 341 ~~v~q~~~~------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 341 AYITESRRD------NGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred EEccCcccc------CCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 999997411 13567789999987653200 10 001111234578899999995 3 45677877 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ +||++++.+|+
T Consensus 415 ~qrv~lAral~~~p~ 429 (510)
T PRK09700 415 QQKVLISKWLCCCPE 429 (510)
T ss_pred HHHHHHHHHHhcCCC
Confidence 3 99999999986
No 259
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=1e-20 Score=151.93 Aligned_cols=142 Identities=14% Similarity=0.165 Sum_probs=100.6
Q ss_pred EEEEeCe-eeec-----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh-hHH--HHHHhhC-
Q psy17514 5 SMVLDGF-KSYG-----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN-TLQ--ELIYKNG- 69 (159)
Q Consensus 5 ~l~l~~~-~~~~-----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~-~~~--~~~~~~~- 69 (159)
.|+++|+ +.|+ ...++++++ |++++|+||||||||||+++|+|+++|++|+|++. +.. ++.....
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4899999 9994 246888887 78999999999999999999999999999999984 411 1110000
Q ss_pred CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------CCCe
Q psy17514 70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------NNPH 141 (159)
Q Consensus 70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~ 141 (159)
.....++.++|++|++ .+++.+|+.+|+.+... ... ......+++.++++.++|.. ..+.
T Consensus 359 ~~~~~~~~i~~v~q~~---------~l~~~~tv~e~l~~~~~--~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 426 (520)
T TIGR03269 359 GRGRAKRYIGILHQEY---------DLYPHRTVLDNLTEAIG--LEL-PDELARMKAVITLKMVGFDEEKAEEILDKYPD 426 (520)
T ss_pred hHHHHhhhEEEEccCc---------ccCCCCcHHHHHHHHHH--cCC-CHHHHHHHHHHHHHhCCCCCccchhhhhCChh
Confidence 0001235699999985 36677899999875321 110 11112356788999999952 4567
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.||+ |+ +||++++.+|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~ 447 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPR 447 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCC
Confidence 8887 33 99999999986
No 260
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.9e-20 Score=150.75 Aligned_cols=130 Identities=11% Similarity=0.101 Sum_probs=97.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ +.|+++++++++| |++++|+|||||||||||++|+|+++|+.|+|.+.+ ...|+
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~--------------~~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP--------------NERLG 67 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--------------CCEEE
Confidence 789999 9998888999988 789999999999999999999999999999998764 12589
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCce------------EEE---EC---------------CEEeCHHHHHHH
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNT------------RYM---IN---------------GSSVNPKRVSDL 129 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~------------~~~---~~---------------~~~~~~~~~~~~ 129 (159)
+++|.+ .+++.+|+.+++.++... ... .+ ......+++.++
T Consensus 68 ~~~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 68 KLRQDQ---------FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred EEeccC---------CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 999975 355667887777653210 000 00 000123567889
Q ss_pred HHhcCccc----CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 130 FSSVNLNV----NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 130 l~~~~l~~----~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
++.++|.. ..+..||+ |+ ++|++|+.+|+
T Consensus 139 l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~ 175 (530)
T PRK15064 139 LLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPD 175 (530)
T ss_pred HHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999964 23577777 33 99999999986
No 261
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=1.6e-20 Score=152.42 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=102.5
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ ..|++ +.+|++++ |+.++|+||||||||||+++|+|+++|++|+|.++| .++...+. ...++
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g-~~i~~~~~--~~~r~ 414 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNG-QPIADYSE--AALRQ 414 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEhhhCCH--HHHHh
Confidence 5899999 99964 46889888 789999999999999999999999999999999988 34322111 12467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---C----------CCeeE
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---N----------NPHFL 143 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~----------~~~~l 143 (159)
.|++++|++ .+|+ -|+++|+.++.. ....+++.++++.+++.. . ....+
T Consensus 415 ~i~~v~Q~~---------~lf~-~ti~~Ni~~~~~--------~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~L 476 (574)
T PRK11160 415 AISVVSQRV---------HLFS-ATLRDNLLLAAP--------NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQL 476 (574)
T ss_pred heeEEcccc---------hhhc-ccHHHHhhcCCC--------ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCC
Confidence 899999996 3554 499999987631 235678888888888864 1 33456
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ ++||++..+|+
T Consensus 477 SgGqrqRialARall~~~~ 495 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAP 495 (574)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 66 33 99999999986
No 262
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=4.7e-21 Score=153.42 Aligned_cols=146 Identities=10% Similarity=0.134 Sum_probs=100.9
Q ss_pred EEEEeCe-eeec---CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-CcccchhhhhHHHHHHhhCCCcee
Q psy17514 5 SMVLDGF-KSYG---TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-IQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 5 ~l~l~~~-~~~~---~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
.|+++|+ +.|+ +..++++++ |++++|+||||||||||+++|+|+++ |++|+|.+++ +++.. .......
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g-~~~~~-~~~~~~~ 336 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDG-KPVKI-RNPQQAI 336 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECC-EECCC-CCHHHHH
Confidence 4899999 8883 456788887 78999999999999999999999998 5899999877 33210 0000112
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE---CCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-C
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI---NGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-Q 146 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q 146 (159)
+..++|++|++... .+++.+|+.+|+.++....+.. .......+++.++++.+++. . ..+..||+ |
T Consensus 337 ~~~i~~v~q~~~~~------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 410 (506)
T PRK13549 337 AQGIAMVPEDRKRD------GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN 410 (506)
T ss_pred HCCCEEeCcchhhC------CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence 45699999985210 2556678999887652111110 01112235678899999995 2 34678877 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ +||++++.+|+
T Consensus 411 kqrv~lA~al~~~p~ 425 (506)
T PRK13549 411 QQKAVLAKCLLLNPK 425 (506)
T ss_pred HHHHHHHHHHhhCCC
Confidence 3 99999999986
No 263
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.79 E-value=6e-21 Score=169.09 Aligned_cols=139 Identities=12% Similarity=0.064 Sum_probs=105.4
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ |.|++ +.++++++ |++++|+||||||||||+++|+|++.|++|+|++.| .++.. . ....++
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G-~~i~~-~--~~~~r~ 2012 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG-KSILT-N--ISDVHQ 2012 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC-EECcc-h--HHHHhh
Confidence 5899999 99985 57899888 799999999999999999999999999999999988 33311 0 011356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.|++++|.+ .+++.+|++|++.+... .+........+.+.++++.++|.. ..+..+|+ |+ ++
T Consensus 2013 ~IGy~pQ~~---------~L~~~LTv~E~L~l~a~--l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2013 NMGYCPQFD---------AIDDLLTGREHLYLYAR--LRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred hEEEEeccc---------cCCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence 799999985 57778999999876422 110111222356778899999975 45677777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|+|++.+|+
T Consensus 2082 A~ALi~~P~ 2090 (2272)
T TIGR01257 2082 AIALIGCPP 2090 (2272)
T ss_pred HHHHhcCCC
Confidence 999999996
No 264
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=6.4e-21 Score=133.69 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=96.9
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+.+|+ .+..++.++++++ ||+++|+|||||||||||++|+|-+.|++|++.+++ .++..... ....+..+
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g-~~l~~~~~--~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNG-VPLNSWPP--EELARHRA 78 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCC-cChhhCCH--HHHHHHhh
Confidence 789999 8889999999988 799999999999999999999999999999999988 33322111 11234567
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEE--eCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS--VNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVT 150 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia 150 (159)
+.+|+.. +-..+||.|-+.++.... . .+.. +..+.+...++..++.. +.-..||+ |+ ++|
T Consensus 79 VlpQ~s~---------laFpFtv~eVV~mGr~p~-~-~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSS---------LAFPFTVQEVVQMGRIPH-R-SGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcc---------cccceEHHHHHHhccccc-c-cCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHH
Confidence 7888752 222358888888875321 1 1122 23344677888888865 33446777 33 999
Q ss_pred HhhcC
Q psy17514 151 KVLNM 155 (159)
Q Consensus 151 ~~l~~ 155 (159)
|+|+.
T Consensus 148 RvLaQ 152 (259)
T COG4559 148 RVLAQ 152 (259)
T ss_pred HHHHH
Confidence 99865
No 265
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.79 E-value=5.3e-21 Score=152.93 Aligned_cols=146 Identities=11% Similarity=0.126 Sum_probs=100.9
Q ss_pred EEEEeCe-eee---cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-cccchhhhhHHHHHHhhCCCcee
Q psy17514 5 SMVLDGF-KSY---GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-QVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 5 ~l~l~~~-~~~---~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
.|+++|+ +.| ++..++++++ |++++|+|||||||||||++|+|+++| ++|+|.+++ +++.. .......
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g-~~~~~-~~~~~~~ 334 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFING-KPVDI-RNPAQAI 334 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECC-EECCC-CCHHHHH
Confidence 4899999 888 3456788887 789999999999999999999999985 799999877 33210 0000112
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-EC--CEEeCHHHHHHHHHhcCccc----CCCeeEEe-C
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-IN--GSSVNPKRVSDLFSSVNLNV----NNPHFLIM-Q 146 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q 146 (159)
++.+++++|++.. ..+++.+|+.+|+.++....+. .. ......+++.++++.+++.. ..+..||+ |
T Consensus 335 ~~~i~~v~q~~~~------~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 335 RAGIAMVPEDRKR------HGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN 408 (500)
T ss_pred hCCCEEcCcchhh------CCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence 4579999998421 0256678899988775321111 00 11112356788999999952 34567777 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ +||++++.+|+
T Consensus 409 kqrv~la~al~~~p~ 423 (500)
T TIGR02633 409 QQKAVLAKMLLTNPR 423 (500)
T ss_pred HHHHHHHHHHhhCCC
Confidence 3 99999999986
No 266
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.79 E-value=7.9e-21 Score=137.68 Aligned_cols=138 Identities=18% Similarity=0.152 Sum_probs=97.5
Q ss_pred EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC---CcccchhhhhHHHHHHhhCCCc
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG---IQVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~~~~~~~~~~~~~~~~ 72 (159)
+.++|+ ..|.. ++++.+++ +++++|+||||||||||+++|+|+++ |++|++.++| .++.. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g-~~~~~-----~ 77 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG-QPRKP-----D 77 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECC-EECCh-----H
Confidence 678888 88854 56888887 68999999999999999999999998 8999999887 33211 1
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE-EECCEEeCHHHHHH-HHHhcCccc---CCCeeEEe-C
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY-MINGSSVNPKRVSD-LFSSVNLNV---NNPHFLIM-Q 146 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~l~~---~~~~~l~~-q 146 (159)
..++.+++++|++ .+++.+|+.+|+.+...... .........+++.+ +++.+++.. ..+..+|+ |
T Consensus 78 ~~~~~i~~~~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 148 (226)
T cd03234 78 QFQKCVAYVRQDD---------ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGE 148 (226)
T ss_pred HhcccEEEeCCCC---------ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHH
Confidence 2356799999985 46777899999876422000 00001111224445 788888864 34567776 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
. ++|++++.+|+
T Consensus 149 ~qrl~laral~~~p~ 163 (226)
T cd03234 149 RRRVSIAVQLLWDPK 163 (226)
T ss_pred HHHHHHHHHHHhCCC
Confidence 3 99999999986
No 267
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=2e-20 Score=152.29 Aligned_cols=132 Identities=17% Similarity=0.273 Sum_probs=101.3
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.++++|+ ..|++ ..+|++++ |+.++|+|+||||||||+++|+|++.|++|+|.++| .++...+. ...++.
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg-~~i~~~~~--~~l~~~ 416 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG-RPLSSLSH--SVLRQG 416 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC-EEhhhCCH--HHHHhh
Confidence 4889999 88964 56888888 799999999999999999999999999999999998 44422111 224688
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
|++++|++ .+|+. |+++|+.++. ...++++.++++.+++.. +....+
T Consensus 417 i~~v~Q~~---------~lF~~-Ti~~NI~~~~---------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 417 VAMVQQDP---------VVLAD-TFLANVTLGR---------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred eEEEccCC---------ccccc-hHHHHHHhCC---------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 99999996 46664 9999998752 234567788888777653 123456
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ ++||++..+|+
T Consensus 478 SGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred CHHHHHHHHHHHHHHhCCC
Confidence 66 33 99999999885
No 268
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.79 E-value=2.3e-20 Score=150.19 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=101.1
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|++ ++++++++ |+.++|+||||||||||+++|+|+++|++|+|.++| .++...+. ...++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g-~~i~~~~~--~~lr~ 396 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG-VPLADADA--DSWRD 396 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EehhhCCH--HHHHh
Confidence 5899999 99975 35888888 789999999999999999999999999999999988 44422111 22467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.+++++|++ .+|+ .|+++|+.++.. ...++++.+.++.+++.+ +....
T Consensus 397 ~i~~v~Q~~---------~lf~-~ti~~Ni~~~~~--------~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~ 458 (529)
T TIGR02857 397 QIAWVPQHP---------FLFA-GTIAENIRLARP--------DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAG 458 (529)
T ss_pred heEEEcCCC---------cccC-cCHHHHHhccCC--------CCCHHHHHHHHHHcCcHHHHHhCcccccchhcccccc
Confidence 899999996 3554 499999987531 124567777777777643 23345
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 459 LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 459 LSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 666 33 99999999986
No 269
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.79 E-value=4.4e-20 Score=135.78 Aligned_cols=143 Identities=12% Similarity=0.146 Sum_probs=96.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHH--hCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFV--LGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~--~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|++..+|.+++ |++++|+|+||||||||+++|+|+ ++|++|++++++ .++..... ....+.
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g-~~~~~~~~-~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG-ESILDLEP-EERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECC-EEcccCCh-hhhhee
Confidence 4899999 9998778888887 689999999999999999999998 578899999987 33211111 111223
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EE-ECCEE--eCHHHHHHHHHhcCccc----CCCe-eEEe-
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YM-INGSS--VNPKRVSDLFSSVNLNV----NNPH-FLIM- 145 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~-~~~~~--~~~~~~~~~l~~~~l~~----~~~~-~l~~- 145 (159)
.+++++|++ .+++.+++.+++.+..... .. ..... ...+++.++++.+++.. ..+. .+|+
T Consensus 85 ~~~~~~q~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYP---------IEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGG 155 (252)
T ss_pred eEEEEeccc---------cccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHH
Confidence 578899885 3555566666654421100 00 00000 11245678899999862 3444 4777
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|. +||++++.+|+
T Consensus 156 ~~qrv~la~al~~~p~ 171 (252)
T CHL00131 156 EKKRNEILQMALLDSE 171 (252)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 33 99999999986
No 270
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.79 E-value=5.6e-20 Score=148.58 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=97.2
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ ++|+ ++.+|.+++ |++++|+|||||||||||++|+|+..|++|+|.+.+ ...
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------~~~ 69 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--------------GIK 69 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--------------CCE
Confidence 4899999 9997 678899888 689999999999999999999999999999997643 136
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-------------EEECCEE---------------------eCH
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-------------YMINGSS---------------------VNP 123 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-------------~~~~~~~---------------------~~~ 123 (159)
|++++|++ .+++++|+.+|+.++.... +...... ...
T Consensus 70 i~~v~Q~~---------~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (552)
T TIGR03719 70 VGYLPQEP---------QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLD 140 (552)
T ss_pred EEEEeccC---------CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhH
Confidence 99999985 3567789999987642100 0000000 012
Q ss_pred HHHHHHHHhcCccc--CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 124 KRVSDLFSSVNLNV--NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 124 ~~~~~~l~~~~l~~--~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
+++.++++.+++.. ..+..+|+ |+ +||++++.+|+
T Consensus 141 ~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~ 181 (552)
T TIGR03719 141 RKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPD 181 (552)
T ss_pred HHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 35667788888853 34567777 33 99999999986
No 271
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.1e-20 Score=138.52 Aligned_cols=142 Identities=13% Similarity=0.187 Sum_probs=98.0
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-----cccchhhhhHHHHHHhhCC--C
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-----QVKQVRANTLQELIYKNGQ--A 71 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-----~~g~i~~~~~~~~~~~~~~--~ 71 (159)
.|+++|+ +.|+++.++.+++ +++++|+|+||||||||+++|+|+..| ++|+|.+++ .++...... .
T Consensus 16 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g-~~~~~~~~~~~~ 94 (265)
T PRK14252 16 KSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP-DNVNILSPEVDP 94 (265)
T ss_pred eEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC-ccccccccccCH
Confidence 5899999 9998878889887 789999999999999999999999874 689998876 222100000 1
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc----c---CCCeeEE
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN----V---NNPHFLI 144 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~---~~~~~l~ 144 (159)
...++.+++++|++ .+++. |+.+|+.++... ..........+++.++++.+++. . ..+..+|
T Consensus 95 ~~~~~~i~~~~q~~---------~~~~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 95 IEVRMRISMVFQKP---------NPFPK-SIFENVAYGLRI-RGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLS 163 (265)
T ss_pred HHHhccEEEEccCC---------cCCcc-hHHHHHHhHHHH-cCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCC
Confidence 12356799999985 35554 888888764210 00011111235667778877763 1 3456676
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ +||++++.+|+
T Consensus 164 ~G~~qrv~laral~~~p~ 181 (265)
T PRK14252 164 GGQQQRLCIARALATDPE 181 (265)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 6 33 99999999986
No 272
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.78 E-value=3.5e-20 Score=153.51 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=100.5
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ .+|++ +.+|+++| |+.++|+||||||||||+++|.|+++|++|+|.++| .++...+. ...+
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg-~~i~~~~~--~~lr 554 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG-VPLVQYDH--HYLH 554 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC-EEHHhcCH--HHHH
Confidence 4899999 99964 46888888 799999999999999999999999999999999998 44432111 2246
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
+.|++++|++ .+|+ -|+++|+.++.. ...++++.++++.+++.. +.-.
T Consensus 555 ~~i~~v~Q~~---------~lF~-gTIreNI~~g~~--------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 616 (711)
T TIGR00958 555 RQVALVGQEP---------VLFS-GSVRENIAYGLT--------DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616 (711)
T ss_pred hhceEEecCc---------cccc-cCHHHHHhcCCC--------CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC
Confidence 7899999996 3444 599999988632 123567777777766542 1224
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.+|+ |+ +|||++..+|+
T Consensus 617 ~LSGGQkQRlalARALl~~p~ 637 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPR 637 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCC
Confidence 5666 33 99999999986
No 273
>KOG0055|consensus
Probab=99.78 E-value=3e-20 Score=156.43 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=102.8
Q ss_pred EEEEeCe-eeecCCe---eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGTRV---EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~---~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.++++|+ .+|+.++ +|++++ |+.++|+|||||||||++..|.+++.|++|+|.++| .++...+ ..+.+
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG-~di~~~~--~~~lr 426 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDG-EDIRNLN--LKWLR 426 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcC-ccchhcc--hHHHH
Confidence 5899999 9998764 566666 789999999999999999999999999999999998 4543222 23457
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
.+|++|+|.| .+...|+.|||.++. ..++.+++.++++..+... +.-.
T Consensus 427 ~~iglV~QeP----------vlF~~tI~eNI~~G~--------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 427 SQIGLVSQEP----------VLFATTIRENIRYGK--------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred hhcCeeeech----------hhhcccHHHHHhcCC--------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 7999999997 333469999999874 2345667777766554321 3556
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
+||+ |+ +|||+|+.+|+
T Consensus 489 qLSGGQKQRIAIARalv~~P~ 509 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRNPK 509 (1228)
T ss_pred CCChHHHHHHHHHHHHHhCCC
Confidence 6888 44 99999999997
No 274
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.78 E-value=3e-20 Score=151.15 Aligned_cols=133 Identities=16% Similarity=0.209 Sum_probs=98.6
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.++++|+ .+|++ ..+|++++ |+.++|+|+||||||||+++|+|+++|++|+|+++| .++...+ ....++.
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g-~~i~~~~--~~~~r~~ 410 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG-TDIRTVT--RASLRRN 410 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC-EEhhhCC--HHHHHhh
Confidence 4899999 99965 56888888 799999999999999999999999999999999988 3432211 1124678
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
|++++|++ .+|+ -|+++|+.++.. ...++++.++++.+++.. +....+
T Consensus 411 i~~v~Q~~---------~lf~-~Ti~~Ni~~~~~--------~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~L 472 (588)
T PRK13657 411 IAVVFQDA---------GLFN-RSIEDNIRVGRP--------DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472 (588)
T ss_pred eEEEecCc---------cccc-ccHHHHHhcCCC--------CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCC
Confidence 99999996 3554 499999987521 123456666666655432 233457
Q ss_pred Ee-C--h-hHhHhhcCCCC
Q psy17514 144 IM-Q--G-RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q--~-~ia~~l~~~p~ 158 (159)
|+ | + +|||++..+|+
T Consensus 473 SgGq~QRialARall~~~~ 491 (588)
T PRK13657 473 SGGERQRLAIARALLKDPP 491 (588)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 77 3 3 99999999886
No 275
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.78 E-value=3.3e-20 Score=150.36 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=101.6
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.++++|+ ..|+ +.++++++| ++.++|+||||||||||++.|.++++|++|+|.++| .++...+. ...++.
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg-~dI~~i~~--~~lr~~ 404 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG-IDIRDISL--DSLRKR 404 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC-EehhhcCH--HHHHHh
Confidence 4899999 9998 578899888 789999999999999999999999999999999977 44432111 225788
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
|++|+|++ .+|. -||.+|+.++.. ..+++++.+.++..++.+ +....+
T Consensus 405 I~~V~Qd~---------~LF~-~TI~~NI~~g~~--------~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L 466 (567)
T COG1132 405 IGIVSQDP---------LLFS-GTIRENIALGRP--------DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466 (567)
T ss_pred ccEEcccc---------eeec-ccHHHHHhcCCC--------CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence 99999996 3555 599999998743 134456666666554322 234567
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||++..+|+
T Consensus 467 SgGQrQrlaiARall~~~~ 485 (567)
T COG1132 467 SGGQRQRLAIARALLRNPP 485 (567)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 76 44 99999999985
No 276
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=7.6e-20 Score=131.86 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=90.1
Q ss_pred EEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC--CCceeEEE
Q psy17514 7 VLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG--QAGVTKAS 77 (159)
Q Consensus 7 ~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~ 77 (159)
.+.|+ +.|+ ...++++++ +++++|+|||||||||||++|+|++.|++|+|.+++ .++..... .....++.
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSN-KNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC-cccccccccccchhhcce
Confidence 46778 8886 456788887 789999999999999999999999999999999987 33211000 01112457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
++|++|++ .++ +.|+.+|+.+... + ..++..++++.+++.. ..+..+
T Consensus 81 i~~~~q~~---------~~~-~~t~~~nl~~~~~--~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 141 (218)
T cd03290 81 VAYAAQKP---------WLL-NATVEENITFGSP--F-------NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINL 141 (218)
T ss_pred EEEEcCCC---------ccc-cccHHHHHhhcCc--C-------CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcC
Confidence 99999985 244 3588888876421 1 1223344455554421 245667
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +||++++.+|+
T Consensus 142 S~G~~qrv~laral~~~p~ 160 (218)
T cd03290 142 SGGQRQRICVARALYQNTN 160 (218)
T ss_pred CHHHHHHHHHHHHHhhCCC
Confidence 76 33 99999999986
No 277
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.78 E-value=1.1e-19 Score=149.02 Aligned_cols=128 Identities=15% Similarity=0.186 Sum_probs=98.1
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|+++.++.+++ |++++|+|||||||||||++|+|+++|++|+|.+ + . ...|
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~-~------------~~~i 384 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-G-T------------KLEV 384 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-C-C------------CcEE
Confidence 4899999 9998888888888 7899999999999999999999999999999987 3 1 1258
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia 150 (159)
+|++|.+. .+++++||.+++.+... ..... ....++.++++.+++.. ..+..||+ |+ ++|
T Consensus 385 ~y~~q~~~--------~l~~~~tv~e~l~~~~~-~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la 452 (635)
T PRK11147 385 AYFDQHRA--------ELDPEKTVMDNLAEGKQ-EVMVN---GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA 452 (635)
T ss_pred EEEeCccc--------ccCCCCCHHHHHHhhcc-ccccc---chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHH
Confidence 99998741 36677889888876421 11101 12456788999999852 35667777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 453 ~al~~~p~ 460 (635)
T PRK11147 453 RLFLKPSN 460 (635)
T ss_pred HHHhcCCC
Confidence 99999885
No 278
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.3e-20 Score=141.89 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=98.1
Q ss_pred EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC-----CcccchhhhhHHHHHHhhCCC
Q psy17514 5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG-----IQVKQVRANTLQELIYKNGQA 71 (159)
Q Consensus 5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~-----~~~g~i~~~~~~~~~~~~~~~ 71 (159)
.|+++|+ +.|. ...+|++++ |++++|+|+|||||||||++|+|+.. |++|+|.++| .++.......
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG-~~i~~~~~~~ 158 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG-TNTRSKKISS 158 (329)
T ss_pred eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC-EEccccccch
Confidence 5899999 9995 346888888 78999999999999999999999986 4689999988 3431100000
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECCEEeCHHHHHHHHHhcCcc-------cCCCeeE
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-INGSSVNPKRVSDLFSSVNLN-------VNNPHFL 143 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l 143 (159)
...+..+++++|++ .+++ .|+++|+.++.. +. ........+.+.++++.++|. ...+..+
T Consensus 159 ~~lr~~i~~v~q~~---------~~~~-~ti~eNi~~~~~--~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~L 226 (329)
T PRK14257 159 LELRTRIGMVFQKP---------TPFE-MSIFDNVAYGPR--NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNAL 226 (329)
T ss_pred HhhhccEEEEecCC---------ccCC-CcHHHHHHhHHH--hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccC
Confidence 12356799999986 2443 689999986532 11 001111122356778888763 1456777
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||+++.+|+
T Consensus 227 SgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPE 245 (329)
T ss_pred CHHHHHHHHHHHHHHhCCC
Confidence 77 43 99999999986
No 279
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.9e-20 Score=132.68 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=86.9
Q ss_pred EEEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC---CcccchhhhhHHHHHHhhCCC
Q psy17514 5 SMVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG---IQVKQVRANTLQELIYKNGQA 71 (159)
Q Consensus 5 ~l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~~~~~~~~~~~~~~~ 71 (159)
.+.++|+ +.|+ ++.++.+++ +++++|+||||||||||+++|+|+++ |++|++.+++ .++... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g-~~~~~~---~ 78 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG-IPYKEF---A 78 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC-EECccc---h
Confidence 4789999 9995 456788877 68999999999999999999999998 8899999887 232110 0
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe-Ch---
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM-QG--- 147 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-q~--- 147 (159)
...++.+++++|++ .+++.+||.+|+.+... .. ....+..+|+ |.
T Consensus 79 ~~~~~~i~~~~q~~---------~~~~~~tv~~~l~~~~~--~~--------------------~~~~~~~LS~Ge~qrl 127 (202)
T cd03233 79 EKYPGEIIYVSEED---------VHFPTLTVRETLDFALR--CK--------------------GNEFVRGISGGERKRV 127 (202)
T ss_pred hhhcceEEEEeccc---------ccCCCCcHHHHHhhhhh--hc--------------------cccchhhCCHHHHHHH
Confidence 11356799999974 45666788888765421 00 2234556666 32
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 128 ~laral~~~p~ 138 (202)
T cd03233 128 SIAEALVSRAS 138 (202)
T ss_pred HHHHHHhhCCC
Confidence 89999999885
No 280
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.9e-20 Score=143.99 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=99.6
Q ss_pred EEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
++++|+ ..|++. +++.+++ ++.++|+|+||||||||+++|.|+++|+.|+|+++| .+...... ..+++++
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng-~~l~~l~~--~~~~k~i 397 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNG-IDLRDLSP--EAWRKQI 397 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC-ccccccCH--HHHHhHe
Confidence 455699 999765 7788887 689999999999999999999999999999999998 34322122 2357899
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-------------CCCeeEEe
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-------------NNPHFLIM 145 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------~~~~~l~~ 145 (159)
++|.|+| .+++ -|+++|+.++. ...+++++.++++..++.+ +.-..+|+
T Consensus 398 ~~v~Q~p---------~lf~-gTireNi~l~~--------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSg 459 (559)
T COG4988 398 SWVSQNP---------YLFA-GTIRENILLAR--------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSG 459 (559)
T ss_pred eeeCCCC---------cccc-ccHHHHhhccC--------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCH
Confidence 9999997 2444 49999998863 2345678888888877754 22334555
Q ss_pred -C--h-hHhHhhcCCCC
Q psy17514 146 -Q--G-RVTKVLNMKPH 158 (159)
Q Consensus 146 -q--~-~ia~~l~~~p~ 158 (159)
| + ++||++..+++
T Consensus 460 GQ~QRlaLARAll~~~~ 476 (559)
T COG4988 460 GQAQRLALARALLSPAS 476 (559)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 2 3 99999988753
No 281
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.78 E-value=9.1e-20 Score=126.34 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=63.5
Q ss_pred EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
|+++|+ +.|+ ++.++++++ +++++|+||||||||||+++|+|+++|++|++.+.+ .+.+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~--------------~~~i 66 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE--------------GEDL 66 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--------------CceE
Confidence 467889 8885 457888887 789999999999999999999999999999998754 1469
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISI 108 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~ 108 (159)
+|++|++. + +..|+.+|+.+
T Consensus 67 ~~~~q~~~---------~-~~~tv~~nl~~ 86 (166)
T cd03223 67 LFLPQRPY---------L-PLGTLREQLIY 86 (166)
T ss_pred EEECCCCc---------c-ccccHHHHhhc
Confidence 99999851 2 23577777654
No 282
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3e-20 Score=135.38 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=89.4
Q ss_pred EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
|+++|+ +.|+ +..++.+++ |++++|+||||||||||+++|+|+.+|++|++.+++ .++.. .. ....++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g-~~~~~-~~-~~~~~~~i 77 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDG-QDIRE-VT-LDSLRRAI 77 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECC-EEhhh-CC-HHHHHhhE
Confidence 468899 8885 466788877 789999999999999999999999999999999877 33321 11 11124569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcC-----------ccc---CCCeeEE
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVN-----------LNV---NNPHFLI 144 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~---~~~~~l~ 144 (159)
+|++|++ .+++ .|+.+|+.++.. . .....+.+.++.++ +.. ..+..+|
T Consensus 78 ~~~~q~~---------~~~~-~tv~~nl~~~~~------~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS 139 (236)
T cd03253 78 GVVPQDT---------VLFN-DTIGYNIRYGRP------D--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLS 139 (236)
T ss_pred EEECCCC---------hhhc-chHHHHHhhcCC------C--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCC
Confidence 9999985 3444 588888876421 0 11122233233222 221 2345677
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ ++|++|+.+|+
T Consensus 140 ~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 140 GGEKQRVAIARAILKNPP 157 (236)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 7 33 99999999996
No 283
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.78 E-value=4e-18 Score=147.32 Aligned_cols=151 Identities=35% Similarity=0.610 Sum_probs=110.8
Q ss_pred EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcc-cchhhhhHHHHHHhhCC--CceeEEEEE
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQV-KQVRANTLQELIYKNGQ--AGVTKASVT 79 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~-g~i~~~~~~~~~~~~~~--~~~~~~~i~ 79 (159)
+..|++.||++|.+...+ ++++++++|+|||||||||||++|.++++... ..++.....++++.+.. .....+.|.
T Consensus 2 i~~l~~~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~ 80 (1179)
T TIGR02168 2 LKKLELAGFKSFADPTTI-NFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVE 80 (1179)
T ss_pred eeEEEEeCccccCCCeeE-EecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEE
Confidence 678999999999876544 68899999999999999999999999986543 23444433455553321 122467899
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCCC
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH 158 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p~ 158 (159)
++|++++.. .|. ..+..++|.+.+...+.+.|++++.......+.+++..+++..+++ .+++||.|..++.++|+
T Consensus 81 ~~~~~~~~~-~~~--~~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~~~~ 155 (1179)
T TIGR02168 81 LVFDNSDGL-LPG--ADYSEISITRRLYRDGESEYFINGQPCRLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEAKPE 155 (1179)
T ss_pred EEEecCCCC-CCC--CCCCeEEEEEEEeeCCCceeeECCCcccHHHHHHHHhccCCCcccc-hheecccHHHHHcCCHH
Confidence 999875321 110 0134578998887766667888888777778899999999987654 57789999999988885
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.77 E-value=5e-20 Score=128.98 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=59.8
Q ss_pred EEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|.+. .++++++ +++++|+||||||||||+++|+|+.+|++|++.+++ .++... . ...++.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~~~-~--~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDG-VPVSDL-E--KALSSL 76 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC-EEHHHH-H--HHHHhh
Confidence 467899 888764 6788877 789999999999999999999999999999999887 332211 0 113467
Q ss_pred EEEEEEcC
Q psy17514 78 VTLTFDNS 85 (159)
Q Consensus 78 i~~v~q~~ 85 (159)
+++++|++
T Consensus 77 i~~~~q~~ 84 (178)
T cd03247 77 ISVLNQRP 84 (178)
T ss_pred EEEEccCC
Confidence 99999875
No 285
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.77 E-value=3.8e-20 Score=135.01 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=89.0
Q ss_pred EEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 6 MVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 6 l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
|+++|+ +.|++ ..++.+++ |++++|+||||||||||+++|+|+++|++|++.++| .++..... ...++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~--~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDG-VDIRDLNL--RWLRS 77 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECC-EehhhcCH--HHHHh
Confidence 468899 88863 35778777 789999999999999999999999999999999887 33321111 11245
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHH---------Hhc--Cccc---CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLF---------SSV--NLNV---NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~---~~~~~ 142 (159)
.++|++|++ .+++ .|+.+|+.++.. . . ..+++.+.+ +.+ ++.. ..+..
T Consensus 78 ~i~~~~q~~---------~~~~-~tv~e~l~~~~~--~----~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (238)
T cd03249 78 QIGLVSQEP---------VLFD-GTIAENIRYGKP--D----A--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQ 139 (238)
T ss_pred hEEEECCch---------hhhh-hhHHHHhhccCC--C----C--CHHHHHHHHHHcChHHHHHhhccccceeeccCCcc
Confidence 699999985 2444 488888876432 0 0 112222222 222 2221 34567
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++|++++.+|+
T Consensus 140 LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 140 LSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 777 33 99999999986
No 286
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.77 E-value=5e-20 Score=139.82 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=100.1
Q ss_pred CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh-CCCceeEEEEEEEEEcCCCCCC
Q psy17514 17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN-GQAGVTKASVTLTFDNSDKKNC 90 (159)
Q Consensus 17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~i~~v~q~~~~~~~ 90 (159)
..+++++| ++..+|+|+||||||||=.+|..++.+. |.|++.| +++.... ..-...++++.+|||+|..
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G-~~i~~~~~~~mrplR~~mQvVFQDPyg--- 374 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDG-QDIDGLSRKEMRPLRRRMQVVFQDPYG--- 374 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECC-ccccccChhhhhhhhhhceEEEeCCCC---
Confidence 45667776 6899999999999999999999999887 9999998 5542211 1112247789999999854
Q ss_pred CCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 91 PIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 91 ~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
.+.|.+||.+-|.-+....-..-+..+..+++.+.|+.+||+. ++|..+|+ |+ +|||+++.+|+
T Consensus 375 ----SLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~ 446 (534)
T COG4172 375 ----SLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPE 446 (534)
T ss_pred ----CCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCc
Confidence 4678899988887764311111122334578899999999987 68999999 55 99999999996
No 287
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.77 E-value=4.7e-20 Score=152.53 Aligned_cols=133 Identities=12% Similarity=0.083 Sum_probs=101.2
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|++ ..+|++++ |+.++|+|+||||||||+++|+|+++|++|+|.++| .++...+. ...+.
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg-~~l~~~~~--~~lr~ 539 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG-VDIRQIDP--ADLRR 539 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEhhhCCH--HHHHh
Confidence 5899999 99963 45888888 789999999999999999999999999999999998 34322111 12467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++|+|++ .+|+ -|+++|+.++.. ....+++.++++.+++.+ +....
T Consensus 540 ~i~~v~Q~~---------~lf~-~TI~eNi~~~~~--------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~ 601 (694)
T TIGR03375 540 NIGYVPQDP---------RLFY-GTLRDNIALGAP--------YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS 601 (694)
T ss_pred ccEEECCCh---------hhhh-hhHHHHHhCCCC--------CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCC
Confidence 899999996 3454 499999987631 234567777777776643 22345
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 602 LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPP 621 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 666 43 99999999986
No 288
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.77 E-value=9.1e-21 Score=137.25 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=91.0
Q ss_pred EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
|..|.++++ +.|++.+++++++ +++++|+||||||||||+++|+|+.+|++|++.+++ .++.
T Consensus 20 ~~~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g-~~~~----------- 87 (224)
T cd03220 20 LKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RVSS----------- 87 (224)
T ss_pred hhhhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEch-----------
Confidence 334778888 8899998999888 689999999999999999999999999999999877 2110
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.++.. ..+.+.+|+.+|+.+... ..........+++.++++.+++.. ..+..+|+ |+ ++
T Consensus 88 ----~~~~~--------~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 153 (224)
T cd03220 88 ----LLGLG--------GGFNPELTGRENIYLNGR--LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAF 153 (224)
T ss_pred ----hhccc--------ccCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 00100 123345688888765421 110011122345677888889865 34567776 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++++.+|+
T Consensus 154 aral~~~p~ 162 (224)
T cd03220 154 AIATALEPD 162 (224)
T ss_pred HHHHhcCCC
Confidence 999999985
No 289
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=5.4e-20 Score=128.25 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=65.6
Q ss_pred EEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|++ ..++.+++ +++++|+||||||||||+++|+|+++|++|++.+++ .++.. .. ....++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~~-~~-~~~~~~~ 77 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG-ADISQ-WD-PNELGDH 77 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC-EEccc-CC-HHHHHhh
Confidence 468899 88865 45777776 789999999999999999999999999999999887 33211 00 0113467
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQI 106 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i 106 (159)
+++++|++ .+++. |+.+|+
T Consensus 78 i~~~~q~~---------~~~~~-tv~~~l 96 (173)
T cd03246 78 VGYLPQDD---------ELFSG-SIAENI 96 (173)
T ss_pred eEEECCCC---------ccccC-cHHHHC
Confidence 99999985 24443 777765
No 290
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.76 E-value=1.5e-19 Score=132.68 Aligned_cols=142 Identities=11% Similarity=0.117 Sum_probs=90.3
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|++ +|++|++.++| .++.... .....+..
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g-~~~~~~~-~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLELS-PEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECC-CccccCC-HHHHhhcc
Confidence 789999 9998888899888 6899999999999999999999995 68999999887 3321101 01112356
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCc--eEEEEC---CEEeCHHHHHHHHHhcCccc---CC-Ce-eEEe-C
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSN--TRYMIN---GSSVNPKRVSDLFSSVNLNV---NN-PH-FLIM-Q 146 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~--~~~~~~---~~~~~~~~~~~~l~~~~l~~---~~-~~-~l~~-q 146 (159)
+++++|++. +++.++...++..... ..+... ......+.+.++++.+++.. +. +. .+|+ |
T Consensus 80 i~~~~q~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPV---------EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred eEEEecCch---------hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence 999999852 2332222111110000 001000 00011345677888888842 22 32 5776 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ +||++++.+|+
T Consensus 151 ~qrv~laral~~~p~ 165 (248)
T PRK09580 151 KKRNDILQMAVLEPE 165 (248)
T ss_pred HHHHHHHHHHHcCCC
Confidence 3 99999999996
No 291
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.76 E-value=2.2e-20 Score=153.24 Aligned_cols=142 Identities=17% Similarity=0.234 Sum_probs=102.6
Q ss_pred EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--c
Q psy17514 5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA--G 72 (159)
Q Consensus 5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~--~ 72 (159)
.|+++|+ +.|++ ..++++++ +++++|+||||||||||+++|+|+++|++|++.++| +++....... .
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g-~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAG-QDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEcCcCCHHHHHH
Confidence 5899999 99953 46788887 789999999999999999999999999999999987 3321100000 0
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch-
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG- 147 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~- 147 (159)
..++.++++||++ .+++++|+.+|+.+... ..........+++.++++.++|.. ..+..+|+ |.
T Consensus 83 ~~~~~i~~v~q~~---------~l~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~q 151 (648)
T PRK10535 83 LRREHFGFIFQRY---------HLLSHLTAAQNVEVPAV--YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQ 151 (648)
T ss_pred HHhccEEEEeCCc---------ccCCCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHH
Confidence 1246799999985 46777788888875321 110011223456788999999976 35667777 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
++||+|+.+|+
T Consensus 152 rv~LAraL~~~P~ 164 (648)
T PRK10535 152 RVSIARALMNGGQ 164 (648)
T ss_pred HHHHHHHHhcCCC
Confidence 99999999996
No 292
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.76 E-value=1.1e-19 Score=147.42 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=100.0
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|.+ ..+|++++ |+.++|+|+||||||||+++|+|++.|++|+|.++| .++...+ ....+.
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g-~~i~~~~--~~~~~~ 406 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG-HDLADYT--LASLRR 406 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC-EeHHhcC--HHHHHh
Confidence 5899999 88864 45788887 799999999999999999999999999999999988 4432211 112467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|+| .+|+ -|+++|+.++.. +...++++.++++.+++.. +.-..
T Consensus 407 ~i~~v~Q~~---------~lf~-~Ti~~Ni~~~~~-------~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~ 469 (571)
T TIGR02203 407 QVALVSQDV---------VLFN-DTIANNIAYGRT-------EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL 469 (571)
T ss_pred hceEEccCc---------cccc-ccHHHHHhcCCC-------CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCc
Confidence 899999996 2443 599999987621 1234577888888777642 11234
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 470 LSgGqrQRiaLARall~~~~ 489 (571)
T TIGR02203 470 LSGGQRQRLAIARALLKDAP 489 (571)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 666 33 99999999886
No 293
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.76 E-value=1.2e-20 Score=137.06 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR 104 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~ 104 (159)
+++++|+||||||||||+++|+|+++|++|+|.++| .++.. .....++++|++ .+++.+|+.+
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-------~~~~~~~v~q~~---------~l~~~~tv~e 73 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG-KQITE-------PGPDRMVVFQNY---------SLLPWLTVRE 73 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCC-------CChhheEEecCc---------ccCCCCCHHH
Confidence 799999999999999999999999999999999887 22210 111247899875 4667779999
Q ss_pred EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
|+.+.....+.........+++.++++.++|.. ..+..+|+ |+ +||++++.+|+
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 134 (230)
T TIGR01184 74 NIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPK 134 (230)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 987642100110011122345788899999975 45667777 33 99999999986
No 294
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.76 E-value=4.5e-20 Score=130.86 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=70.1
Q ss_pred EEEEeCe-eeecC------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCC
Q psy17514 5 SMVLDGF-KSYGT------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQ 70 (159)
Q Consensus 5 ~l~l~~~-~~~~~------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~ 70 (159)
.|+++|+ +.|+. ..++.+++ +++++|+||||||||||+++|+|++ +|++|++.+++ +++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g-~~~~~---- 77 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLING-RPLDK---- 77 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC-EeCch----
Confidence 4789999 99975 57888887 6899999999999999999999999 99999999987 33211
Q ss_pred CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514 71 AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISI 108 (159)
Q Consensus 71 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~ 108 (159)
...++.+++++|++ .+++.+|+.+|+.+
T Consensus 78 -~~~~~~i~~~~q~~---------~~~~~~t~~~~i~~ 105 (194)
T cd03213 78 -RSFRKIIGYVPQDD---------ILHPTLTVRETLMF 105 (194)
T ss_pred -HhhhheEEEccCcc---------cCCCCCcHHHHHHH
Confidence 12356799999885 35556677776643
No 295
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1e-19 Score=129.02 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=101.1
Q ss_pred EEEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ .+..++ .+|+++| +|+.+|+||||||||||..+|+|.- ..+.|+|.++| +++.... .....+
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~G-edI~~l~-~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG-EDILELS-PDERAR 80 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECC-cccccCC-HhHHHh
Confidence 3899999 888884 8999998 7999999999999999999999986 44599999999 6664422 233357
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC-EEeCHHHHHHHHHhcCccc----CC-CeeEEe-Ch-
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING-SSVNPKRVSDLFSSVNLNV----NN-PHFLIM-QG- 147 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~-~~~l~~-q~- 147 (159)
+.|.+.||.|. -++..++.+.+...........+ ...-.+++.+.++.++++. ++ ...+|+ .+
T Consensus 81 ~GifLafQ~P~---------ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPV---------EIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCc---------cCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHH
Confidence 88999999973 44555555544432210000000 1123567888899999986 22 235555 22
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
.|.++++++|+
T Consensus 152 R~EilQ~~~lePk 164 (251)
T COG0396 152 RNEILQLLLLEPK 164 (251)
T ss_pred HHHHHHHHhcCCC
Confidence 99999999996
No 296
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.3e-19 Score=128.33 Aligned_cols=145 Identities=14% Similarity=0.079 Sum_probs=100.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ ..|+++.+|.+++ ++--+|+|||||||||||+.+++-..|++|.+...| +.+-+ .......+++|
T Consensus 31 li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G-~~~G~-~~~~~elrk~I 108 (257)
T COG1119 31 LIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLG-RRFGK-GETIFELRKRI 108 (257)
T ss_pred eEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeee-eeccC-CcchHHHHHHh
Confidence 5899999 9999999999998 788899999999999999999999999988877765 22111 11112357789
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---EEECCEEeCHHHHHHHHHhcCccc--CCCeeEEeCh-----h
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---YMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIMQG-----R 148 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~q~-----~ 148 (159)
|+|...-.. .+.++.++++-+..+.-.. |...-......++..+++.+++.. +.+..-+||| -
T Consensus 109 G~vS~~L~~-------~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvL 181 (257)
T COG1119 109 GLVSSELHE-------RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVL 181 (257)
T ss_pred CccCHHHHh-------hcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHH
Confidence 998743221 1223456777665543211 111112223456778899999986 5566556655 8
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
|||||+.+|+
T Consensus 182 iaRALv~~P~ 191 (257)
T COG1119 182 IARALVKDPE 191 (257)
T ss_pred HHHHHhcCCC
Confidence 9999999996
No 297
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=7.8e-20 Score=127.24 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=65.6
Q ss_pred EEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|++. .++.+++ +++++|+||||||||||+++|+|+++|++|++.+++ .++.... ....++.
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g-~~~~~~~--~~~~~~~ 77 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG-VDLRDLD--LESLRKN 77 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC-EEhhhcC--HHHHHhh
Confidence 468899 888765 6777777 789999999999999999999999999999999887 3321111 1113457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQI 106 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i 106 (159)
++++||++ .+++ .|+.+|+
T Consensus 78 i~~~~~~~---------~~~~-~t~~e~l 96 (171)
T cd03228 78 IAYVPQDP---------FLFS-GTIRENI 96 (171)
T ss_pred EEEEcCCc---------hhcc-chHHHHh
Confidence 99999885 2333 3666665
No 298
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.75 E-value=6.8e-20 Score=133.12 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=83.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC----cccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI----QVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTI 100 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~----~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 100 (159)
+++++|+||||||||||+++|+|+++| ++|+|.++| +++... ...++.+++++|++.. .+++.+
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g-~~~~~~----~~~~~~i~~~~q~~~~-------~~~~~~ 79 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG-RPLLPL----SIRGRHIATIMQNPRT-------AFNPLF 79 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECC-Eechhh----hhhhheeEEEecCchh-------hcCccc
Confidence 789999999999999999999999998 899999988 343211 1123579999998520 133456
Q ss_pred EEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc---c---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 101 VICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN---V---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 101 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
|+.+++.+... .... ......+++.++++.+++. . ..+..+|+ |+ ++|++++.+|+
T Consensus 80 t~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 145 (230)
T TIGR02770 80 TMGNHAIETLR-SLGK-LSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPP 145 (230)
T ss_pred CHHHHHHHHHH-HcCc-cHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 77666643211 0100 0112235688899999996 2 34567777 33 99999999985
No 299
>PLN03211 ABC transporter G-25; Provisional
Probab=99.75 E-value=5.7e-20 Score=150.68 Aligned_cols=133 Identities=13% Similarity=0.116 Sum_probs=98.0
Q ss_pred EeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc--ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 8 LDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ--VKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 8 l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
++|+ +.|+++.+|++++ |++++|+|||||||||||++|+|...++ +|+|.++| +++.. ..++.++
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG-~~~~~------~~~~~i~ 143 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN-RKPTK------QILKRTG 143 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECC-EECch------hhccceE
Confidence 4456 6788888999998 6899999999999999999999998875 89999988 32211 1235699
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC---EEeCHHHHHHHHHhcCccc--C------CCeeEEe-Ch
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING---SSVNPKRVSDLFSSVNLNV--N------NPHFLIM-QG 147 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~------~~~~l~~-q~ 147 (159)
+++|++ .+++.+||.|++.+... .+... .....+++.++++.++|.. + ....+|+ |+
T Consensus 144 yv~Q~~---------~l~~~lTV~E~l~~~a~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGer 212 (659)
T PLN03211 144 FVTQDD---------ILYPHLTVRETLVFCSL--LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGER 212 (659)
T ss_pred EECccc---------ccCCcCCHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhh
Confidence 999985 46778899999987432 11111 1122345788999999964 1 2346777 43
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 213 qRv~ia~aL~~~P~ 226 (659)
T PLN03211 213 KRVSIAHEMLINPS 226 (659)
T ss_pred hHHHHHHHHHhCCC
Confidence 99999999986
No 300
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.75 E-value=1.7e-19 Score=146.38 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=97.6
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ .+|++ +.+|++++ |+.++|+|+||||||||+++|+|+++|.+|+++++| .++..... ...+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g-~~i~~~~~--~~~~ 413 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG-VDLRQLDP--AELR 413 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC-EEHHhcCH--HHHH
Confidence 5899999 89964 45788887 799999999999999999999999999999999988 34322111 1135
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
+.+++++|++ .+|+ -|+++|+.++.. ....+++.+.++.+++.. +...
T Consensus 414 ~~i~~~~Q~~---------~lf~-~Ti~~Ni~~~~~--------~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~ 475 (576)
T TIGR02204 414 ARMALVPQDP---------VLFA-ASVMENIRYGRP--------DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGV 475 (576)
T ss_pred HhceEEccCC---------cccc-ccHHHHHhcCCC--------CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCC
Confidence 6799999996 2444 489999987531 123456767777666532 1234
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.+|+ |+ ++||++..+|+
T Consensus 476 ~LSgGq~Qrl~laRal~~~~~ 496 (576)
T TIGR02204 476 TLSGGQRQRIAIARAILKDAP 496 (576)
T ss_pred cCCHHHHHHHHHHHHHHhCCC
Confidence 5666 33 99999999886
No 301
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=8.6e-20 Score=129.24 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=68.9
Q ss_pred EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCc
Q psy17514 5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~ 72 (159)
.|+++|+ +.|++ ..++++++ +++++|+|||||||||||++|+|+. +|++|++.+++ +++. .
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g-~~~~------~ 75 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILING-RPLD------K 75 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECC-EehH------H
Confidence 5889999 99974 56888887 6899999999999999999999986 47899999887 3332 1
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISI 108 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~ 108 (159)
..++.+++++|.+ .+++.+|+.+|+.+
T Consensus 76 ~~~~~i~~~~q~~---------~~~~~~tv~~~l~~ 102 (192)
T cd03232 76 NFQRSTGYVEQQD---------VHSPNLTVREALRF 102 (192)
T ss_pred HhhhceEEecccC---------ccccCCcHHHHHHH
Confidence 1345799999875 35566677777654
No 302
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.75 E-value=1.2e-20 Score=143.36 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=83.9
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcC
Q psy17514 30 ITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIP 109 (159)
Q Consensus 30 liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~ 109 (159)
|+|||||||||||++|+|+++|++|+|.++| +++.. ....++.++|+||++ .+++++|+.+|+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g-~~i~~----~~~~~~~i~~v~q~~---------~l~~~~tv~enl~~~ 66 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDG-EDVTN----VPPHLRHINMVFQSY---------ALFPHMTVEENVAFG 66 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECC-EECCC----CCHHHCCEEEEecCc---------cccCCCcHHHHHHHH
Confidence 6899999999999999999999999999987 33211 011245799999985 578889999999876
Q ss_pred CceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 110 SNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
.. +.........+++.++++.++|.. ..+..+|+ |+ +|||+|+.+|+
T Consensus 67 ~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 120 (325)
T TIGR01187 67 LK--MRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120 (325)
T ss_pred Hh--hcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 32 110111122356788999999965 46778888 33 99999999986
No 303
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.75 E-value=2.1e-19 Score=157.38 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=102.4
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC------------------------
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI------------------------ 51 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~------------------------ 51 (159)
.|+++|+ .+|.+ .++|++++ |+.++|+||||||||||++.|.+++.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 4899999 99963 46889888 789999999999999999999999998
Q ss_pred ------------------------------cccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEE
Q psy17514 52 ------------------------------QVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIV 101 (159)
Q Consensus 52 ------------------------------~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~t 101 (159)
++|+|.++| .++...+. ...+..|++|+|+| .+|+ .|
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG-~di~~~~~--~~lR~~i~~V~Qep---------~LF~-gT 1311 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG-VDICDYNL--KDLRNLFSIVSQEP---------MLFN-MS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECC-EEHHhCCH--HHHHhhccEeCCCC---------cccc-cc
Confidence 589999988 45432111 22578899999997 3454 69
Q ss_pred EEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 102 ICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 102 v~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
+++||.++.. ....+++.++++..++.. +.-..||+ |+ +|||||..+|+
T Consensus 1312 IreNI~~g~~--------~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ 1378 (1466)
T PTZ00265 1312 IYENIKFGKE--------DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPK 1378 (1466)
T ss_pred HHHHHhcCCC--------CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999998732 235577888888777643 23456777 43 99999999996
No 304
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.75 E-value=3e-19 Score=131.75 Aligned_cols=132 Identities=10% Similarity=0.124 Sum_probs=89.9
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|+. ..++++++ +++++|+|+||||||||+++|+|+++|.+|++.+++ .++... . ....+.
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g-~~i~~~-~-~~~~~~ 95 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDG-IDISKL-P-LHTLRS 95 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECC-EEhhhC-C-HHHHhh
Confidence 5899999 89975 46788887 789999999999999999999999999999999987 333211 1 111356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcC-----------ccc---CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVN-----------LNV---NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~---~~~~~ 142 (159)
.+++++|++ .+++ .|+.+|+..... .....+.++++.++ ++. ..+..
T Consensus 96 ~i~~v~q~~---------~l~~-~tv~~nl~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 156 (257)
T cd03288 96 RLSIILQDP---------ILFS-GSIRFNLDPECK---------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGEN 156 (257)
T ss_pred hEEEECCCC---------cccc-cHHHHhcCcCCC---------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCc
Confidence 799999985 2444 377777653211 01223333333333 322 22345
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |. ++||+++.+|+
T Consensus 157 LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 157 FSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 666 32 99999999986
No 305
>KOG0964|consensus
Probab=99.75 E-value=1.6e-17 Score=135.84 Aligned_cols=150 Identities=30% Similarity=0.559 Sum_probs=123.2
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|++..+.|+||++|.+.+++.++|+..++|||.||||||+++.||.+.+...-.+.+-.....+++.++......+.|.+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~E~R~gLlHEGsG~~V~sA~VEI 80 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKREERQGLLHEGSGAMVMSASVEI 80 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCHHHHhhhhhcCCCcceEEEEEEE
Confidence 88999999999999999999999999999999999999999999999987664455444445566666655667899999
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcC
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNM 155 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~ 155 (159)
+|.+++..+. .--.+.++++.+..-.. .|.++++-+....+..+|+..|+.-.+|++.+.||.|..+..+
T Consensus 81 vF~nsdnr~~----~~k~Ev~lrRtVGlKKD-eY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~a 150 (1200)
T KOG0964|consen 81 VFDNSDNRLP----RGKSEVSLRRTVGLKKD-EYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANA 150 (1200)
T ss_pred EEeCcccccC----CCCCeEEEEEeecccch-hhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcC
Confidence 9999876531 12246788888876533 6888999899999999999999999999999999988776654
No 306
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=1.9e-18 Score=125.64 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=83.4
Q ss_pred EEEEeCe-eeecC---------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC
Q psy17514 5 SMVLDGF-KSYGT---------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG 69 (159)
Q Consensus 5 ~l~l~~~-~~~~~---------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~ 69 (159)
.|+++|+ +.|.. ..+++++| +++.+|+|+|||||||+-++|.+++.|++|+|.+.| +++..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g-~~i~~--- 79 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-KDITK--- 79 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC-cchhh---
Confidence 4899999 88853 26778887 689999999999999999999999999999999987 22110
Q ss_pred CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe
Q psy17514 70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM 145 (159)
Q Consensus 70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~ 145 (159)
++ +....+++.++|+.+|+.. ++|.++|+
T Consensus 80 ------------------------------~~-----------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 80 ------------------------------LS-----------------KEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred ------------------------------cc-----------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 01 1223467999999999876 68999999
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|. .|||||+.+|+
T Consensus 113 GQrQRi~IARALal~P~ 129 (268)
T COG4608 113 GQRQRIGIARALALNPK 129 (268)
T ss_pred hhhhhHHHHHHHhhCCc
Confidence 44 99999999996
No 307
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=2.4e-19 Score=145.37 Aligned_cols=133 Identities=11% Similarity=0.142 Sum_probs=97.5
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++++ .+|+. ..+|++++ |+.++|+||||||||||+++|+|+++|++|+|.++| .++.... ....+.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g-~~~~~~~--~~~~~~ 389 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHD-IPLTKLQ--LDSWRS 389 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECC-EEHhhCC--HHHHHh
Confidence 4788999 88864 45788887 789999999999999999999999999999999987 3432111 112467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.+++++|++ .+++ -|+++|+.++.. ....+++.+.++.+++.. +....
T Consensus 390 ~i~~v~q~~---------~lf~-~ti~~Ni~~~~~--------~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~ 451 (569)
T PRK10789 390 RLAVVSQTP---------FLFS-DTVANNIALGRP--------DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVM 451 (569)
T ss_pred heEEEccCC---------eecc-ccHHHHHhcCCC--------CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCc
Confidence 799999986 3555 399999987521 124456666666665532 22345
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 452 LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 452 LSGGQKQRISIARALLLNAE 471 (569)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 666 33 99999999996
No 308
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.75 E-value=2.3e-19 Score=144.83 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=95.3
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.++++|+ .+|++ ..++++++ |+.++|+||||||||||+++|+|+++|++|++.++| .++...+ ....++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-~~i~~~~--~~~~~~ 392 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG-ADLKQWD--RETFGK 392 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EehhhCC--HHHHhh
Confidence 4899999 99964 46788887 789999999999999999999999999999999987 3432211 112467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~~~ 142 (159)
.+++++|++ .+++. |+++|+.+... ....+++.+.++..++ +. +....
T Consensus 393 ~i~~v~q~~---------~lf~~-ti~~Ni~~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~ 454 (544)
T TIGR01842 393 HIGYLPQDV---------ELFPG-TVAENIARFGE--------NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGAT 454 (544)
T ss_pred heEEecCCc---------ccccc-cHHHHHhccCC--------CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCC
Confidence 899999986 35554 89999875421 1233444444444333 22 23456
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 455 LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 455 LSGGQRQRIALARALYGDPK 474 (544)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 777 33 99999999996
No 309
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.75 E-value=7.4e-20 Score=128.56 Aligned_cols=92 Identities=11% Similarity=0.225 Sum_probs=66.8
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.| ++++++ +++++|+||||||||||+++|+|+++|++|++.+++ .++..... ....++.+
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~-~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG-KPVTRRSP-RDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCccCH-HHHHhCCe
Confidence 4889999 888 677776 789999999999999999999999999999999887 33211000 01124579
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISI 108 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~ 108 (159)
++++|++.. ..+++.+|+.+|+.+
T Consensus 78 ~~~~q~~~~------~~~~~~~t~~e~l~~ 101 (182)
T cd03215 78 AYVPEDRKR------EGLVLDLSVAENIAL 101 (182)
T ss_pred EEecCCccc------CcccCCCcHHHHHHH
Confidence 999987420 024555677777654
No 310
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.74 E-value=2.9e-19 Score=145.34 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=95.2
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ .+|++ ..++.+++ |+.++|+||||||||||+++|+|+.+|++|+|.++| .++...+ ....++.
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-~~~~~~~--~~~~~~~ 410 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG-IDINTVT--RESLRKS 410 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC-EEhhhCC--HHHHHhh
Confidence 4899999 99975 55788887 799999999999999999999999999999999987 3332111 1124678
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~~~l 143 (159)
+++++|++ .+++ .|+++|+.++.. ....+++.+.++.+++ +. +....+
T Consensus 411 i~~v~q~~---------~lf~-~ti~~Ni~~~~~--------~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L 472 (585)
T TIGR01192 411 IATVFQDA---------GLFN-RSIRENIRLGRE--------GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472 (585)
T ss_pred eEEEccCC---------ccCc-ccHHHHHhcCCC--------CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence 99999996 3444 589999987531 1123444444443332 21 334567
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ ++||++..+|+
T Consensus 473 SgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 473 SGGERQRLAIARAILKNAP 491 (585)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 76 33 99999999986
No 311
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.74 E-value=8.9e-19 Score=144.02 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=96.4
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.|+ +..++++++ |++++|+||||||||||+++|+|+.+++.|++..++ +..
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--------------~~~ 516 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--------------KGK 516 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--------------CCc
Confidence 4889999 8885 557888887 789999999999999999999999999999886431 356
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CC----------CeeEEe
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NN----------PHFLIM 145 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~----------~~~l~~ 145 (159)
+++++|++ .+++. |+++|+.++.... .........+++.++++.+++.. +. +..+|+
T Consensus 517 i~~v~Q~~---------~l~~~-tv~eni~~~~~~~-~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSg 585 (659)
T TIGR00954 517 LFYVPQRP---------YMTLG-TLRDQIIYPDSSE-DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSG 585 (659)
T ss_pred EEEECCCC---------CCCCc-CHHHHHhcCCChh-hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCH
Confidence 99999986 24554 8999998764210 00011223567788899998864 22 246777
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ +|||+++.+|+
T Consensus 586 GqkQRl~iARal~~~p~ 602 (659)
T TIGR00954 586 GEKQRIAMARLFYHKPQ 602 (659)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 33 99999999996
No 312
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.2e-20 Score=125.83 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=90.7
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
++.+|+ ..-+++.++.+++ +|++.|.|||||||||||++|+|++.|++|+|++.+ ..+.. ........+-
T Consensus 3 L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~-~~i~~---~~~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG-EPIQN---VRESYHQALL 78 (209)
T ss_pred chhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC-CCCcc---chhhHHHHHH
Confidence 577788 5566777777777 789999999999999999999999999999999986 22110 0000112233
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CCCe-eEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NNPH-FLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~-~l~~-q~---~ia~~ 152 (159)
|+--.+ .+-+++|+.||+.|-.. +.+. .....+.+.++.++|.. +-|+ +||. |+ ++||.
T Consensus 79 yLGH~~---------giK~eLTa~ENL~F~~~----~~~~-~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL 144 (209)
T COG4133 79 YLGHQP---------GIKTELTALENLHFWQR----FHGS-GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARL 144 (209)
T ss_pred Hhhccc---------cccchhhHHHHHHHHHH----HhCC-CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHH
Confidence 332222 24457899999988422 1222 23467888999999976 5565 4544 44 88888
Q ss_pred hcCCC
Q psy17514 153 LNMKP 157 (159)
Q Consensus 153 l~~~p 157 (159)
.+..+
T Consensus 145 ~ls~~ 149 (209)
T COG4133 145 WLSPA 149 (209)
T ss_pred HcCCC
Confidence 76543
No 313
>KOG0055|consensus
Probab=99.74 E-value=3.9e-19 Score=149.82 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=105.4
Q ss_pred EEEEeCe-eeecCC---eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGTR---VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~~---~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.++++|+ .+|+.+ +++.+++ |+.++|||||||||||++.+|-..+.|++|.|.++| .++...+ -.+.|
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg-~dik~ln--l~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDG-VDIKDLN--LKWLR 1063 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC-cccccCC--HHHHH
Confidence 4899999 999865 4677777 789999999999999999999999999999999998 4543222 12358
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
++++.|.|+| .+|. -|++|||.+|.. + ..+.++.+.++..+... +.-.
T Consensus 1064 ~~i~lVsQEP---------~LF~-~TIrENI~YG~~-------~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1064 KQIGLVSQEP---------VLFN-GTIRENIAYGSE-------E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred HhcceeccCc---------hhhc-ccHHHHHhccCC-------C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 8999999997 3554 499999998722 2 56788888888776532 3456
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
+||+ |+ +||||+..+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCC
Confidence 7888 44 99999999997
No 314
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.74 E-value=2.1e-19 Score=148.73 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=98.1
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|++ ..+|++++ |+.++|+|+||||||||+++|+|++.|++|+|.++| .++...+. ...++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg-~~i~~~~~--~~~r~ 531 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG-VDLAIADP--AWLRR 531 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EehhhCCH--HHHHH
Confidence 5899999 99953 45788887 789999999999999999999999999999999998 34322111 12467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|++ .+++ .|+++|+.++.. ....+++.++++.+++.. +....
T Consensus 532 ~i~~v~q~~---------~lf~-~ti~eNi~~~~~--------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~ 593 (694)
T TIGR01846 532 QMGVVLQEN---------VLFS-RSIRDNIALCNP--------GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN 593 (694)
T ss_pred hCeEEccCC---------eehh-hhHHHHHhcCCC--------CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCC
Confidence 899999986 3444 499999987521 123456666666655432 23345
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 594 LSgGq~qri~lARall~~~~ 613 (694)
T TIGR01846 594 LSGGQRQRIAIARALVGNPR 613 (694)
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 666 33 99999999986
No 315
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.74 E-value=1.5e-19 Score=144.34 Aligned_cols=143 Identities=17% Similarity=0.095 Sum_probs=94.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC-cccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI-QVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.|++..+|++++ |++++|+||||||||||+++|+|+.++ ++|+|.++| +++.. .......++.
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g-~~~~~-~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFG-RRRGS-GETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEec-ccCCC-CCCHHHHHhh
Confidence 4899999 9998878899888 789999999999999999999998765 689999887 22210 0000112457
Q ss_pred EEEEEEcCCCCCCCCCccCCC--eEEEEEEEEcCCceEEE-ECC-EEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch-
Q psy17514 78 VTLTFDNSDKKNCPIGYENDN--TIVICRQISIPSNTRYM-ING-SSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG- 147 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~--~~tv~~~i~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~- 147 (159)
|++++|++. ++. ..++.+++..+...... ... .....+++.++++.++|.. ..+..||+ |+
T Consensus 338 i~~v~q~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 338 IGYVSSSLH---------LDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred ceEECHHHH---------hhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHH
Confidence 999998742 111 12333332221100000 000 1112356788999999964 34577777 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 409 rv~la~al~~~p~ 421 (490)
T PRK10938 409 LALIVRALVKHPT 421 (490)
T ss_pred HHHHHHHHhcCCC
Confidence 99999999986
No 316
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.73 E-value=2e-19 Score=128.09 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=59.6
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHH--hCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFV--LGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~--~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
|+++|+ +.|++..++.+++ +++++|+|+||||||||+++|+|+ ..|++|++.++| +++... ......+..
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g-~~~~~~-~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG-EDITDL-PPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECC-EECCcC-CHHHHhhCc
Confidence 468899 8998878889888 689999999999999999999999 478999999887 322110 000112345
Q ss_pred EEEEEEcC
Q psy17514 78 VTLTFDNS 85 (159)
Q Consensus 78 i~~v~q~~ 85 (159)
+++++|.+
T Consensus 79 i~~v~q~~ 86 (200)
T cd03217 79 IFLAFQYP 86 (200)
T ss_pred EEEeecCh
Confidence 99999875
No 317
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=6.5e-19 Score=129.74 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=85.7
Q ss_pred eCe-eeecCC-eeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchh-----------hhhHHHHHHhhCCC
Q psy17514 9 DGF-KSYGTR-VEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVR-----------ANTLQELIYKNGQA 71 (159)
Q Consensus 9 ~~~-~~~~~~-~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~-----------~~~~~~~~~~~~~~ 71 (159)
.++ ++|+.. .++++++ +++++|+|||||||||||++|+|+++|++|+|+ +++ .++.......
T Consensus 4 ~~~~~~y~~~~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g-~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRG-SELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccC-chhhhhhHHh
Confidence 367 888764 4677776 689999999999999999999999999999995 444 2221111100
Q ss_pred ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch
Q psy17514 72 GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG 147 (159)
Q Consensus 72 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~ 147 (159)
......+++++|.. ..++. ++.+++..... .......+.++++.++|.. ..+..+|+ |+
T Consensus 83 ~~~~~~i~~~~~~~---------~~~~~-~~~~~i~~~l~-------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 145 (255)
T cd03236 83 LEGDVKVIVKPQYV---------DLIPK-AVKGKVGELLK-------KKDERGKLDELVDQLELRHVLDRNIDQLSGGEL 145 (255)
T ss_pred hhcccceeeecchh---------ccCch-HHHHHHHHHhc-------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 00112467777763 23332 34444333211 1112456788999999975 45667777 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
++|++++.+|+
T Consensus 146 qrv~laral~~~p~ 159 (255)
T cd03236 146 QRVAIAAALARDAD 159 (255)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999885
No 318
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.73 E-value=8.9e-19 Score=141.51 Aligned_cols=129 Identities=14% Similarity=0.132 Sum_probs=95.3
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ .+|++ ..+|++++ |+.++|+||||||||||+++|+|+++|++|+|.++| .++... .....++.
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-~~~~~~--~~~~~~~~ 398 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG-KPVTAE--QPEDYRKL 398 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EECCCC--CHHHHhhh
Confidence 5899999 99964 45888888 789999999999999999999999999999999987 332110 11124678
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccC--C------CeeEEe-Ch-
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVN--N------PHFLIM-QG- 147 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~------~~~l~~-q~- 147 (159)
+++++|++ .+|+ .|+.+| + .....+++.+.++.+++... . ...+|+ |+
T Consensus 399 i~~v~q~~---------~lf~-~ti~~n---~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~q 456 (547)
T PRK10522 399 FSAVFTDF---------HLFD-QLLGPE---G---------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKK 456 (547)
T ss_pred eEEEecCh---------hHHH-Hhhccc---c---------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHH
Confidence 99999986 2343 356555 1 12344677888888888652 1 235776 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
++||++..+|+
T Consensus 457 Rl~lARal~~~~~ 469 (547)
T PRK10522 457 RLALLLALAEERD 469 (547)
T ss_pred HHHHHHHHhcCCC
Confidence 99999999986
No 319
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.73 E-value=1.1e-19 Score=133.52 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=83.1
Q ss_pred eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCC
Q psy17514 19 EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIG 93 (159)
Q Consensus 19 ~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 93 (159)
+|.+++ |++++|+||||||||||+++|+|+.++ +|++.++| +++.. .. ....++.+++++|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g-~~i~~-~~-~~~~~~~i~~v~q~~-------- 78 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAG-QPLEA-WS-AAELARHRAYLSQQQ-------- 78 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECC-EecCc-CC-HHHHhhheEEecccC--------
Confidence 456665 789999999999999999999999864 89999887 33211 00 011234689999875
Q ss_pred ccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcC
Q psy17514 94 YENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNM 155 (159)
Q Consensus 94 ~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~ 155 (159)
.+++.+|+.+|+.+... .. .......+++.++++.++|.. ..+..+|+ |+ +||++++.
T Consensus 79 -~~~~~~tv~~nl~~~~~--~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 79 -TPPFAMPVFQYLTLHQP--DK-TRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred -ccCCCccHHHHHHhcCc--cC-CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 24455788888776421 11 111122456788999999965 34667776 33 99999986
No 320
>PLN03232 ABC transporter C family member; Provisional
Probab=99.73 E-value=5.6e-19 Score=155.44 Aligned_cols=132 Identities=11% Similarity=0.136 Sum_probs=101.3
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|.+ ..+|++++ |+.++|+|+||||||||+++|.+++.|++|+|.++| .++...+. ...|+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG-~di~~i~~--~~lR~ 1310 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDD-CDVAKFGL--TDLRR 1310 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECC-EEhhhCCH--HHHHh
Confidence 4899999 99953 46899998 789999999999999999999999999999999998 45432111 12477
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
+|++++|+| .+|+. |+++|+..+. ...++++.++++.+++.+ +.-..
T Consensus 1311 ~i~iVpQdp---------~LF~g-TIr~NL~~~~---------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232 1311 VLSIIPQSP---------VLFSG-TVRFNIDPFS---------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred hcEEECCCC---------eeeCc-cHHHHcCCCC---------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence 899999997 35654 9999997642 234567777887776643 12235
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +||||+..+|+
T Consensus 1372 LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 666 44 99999999986
No 321
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.73 E-value=1.3e-19 Score=144.93 Aligned_cols=141 Identities=13% Similarity=0.196 Sum_probs=94.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +. ++++++ |++++|+||||||||||+++|+|+++|++|+|+++| +++.. .......++.|
T Consensus 257 ~l~~~~l~~~-----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g-~~i~~-~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSGP-----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG-HEVVT-RSPQDGLANGI 329 (501)
T ss_pred EEEEeCcccC-----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCC-CCHHHHHHCCC
Confidence 4778887 42 355665 789999999999999999999999999999999887 22210 00001123569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE----ECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch--
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM----INGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG-- 147 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~-- 147 (159)
+|++|++.. ..+++.+|+.+|+.++....+. ........+++.++++.++|. . ..+..||+ |+
T Consensus 330 ~~v~q~~~~------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 330 VYISEDRKR------DGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred EEecCcccc------CCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence 999998520 0255667898888764210010 001112235678899999994 2 45677777 33
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 404 v~lA~al~~~p~ 415 (501)
T PRK10762 404 VAIARGLMTRPK 415 (501)
T ss_pred HHHHHHHhhCCC
Confidence 99999999985
No 322
>PRK13409 putative ATPase RIL; Provisional
Probab=99.73 E-value=2e-18 Score=140.07 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=93.1
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++.. |.+++ |++++|+||||||||||+++|+|+++|++|+|.++ ..+
T Consensus 340 ~l~~~~ls~~~~~~~-l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----------------LKI 402 (590)
T ss_pred EEEEcceEEEECCEE-EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----------------eeE
Confidence 4899999 8897653 66655 78999999999999999999999999999988752 158
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|++|++ .+++++||.+++.+... .+ + ....+.++++.++|.. ..+..||+ |+ +||+
T Consensus 403 ~y~~Q~~---------~~~~~~tv~e~l~~~~~-~~---~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAr 466 (590)
T PRK13409 403 SYKPQYI---------KPDYDGTVEDLLRSITD-DL---G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAA 466 (590)
T ss_pred EEecccc---------cCCCCCcHHHHHHHHhh-hc---C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999985 24456789888765421 11 1 1235678899999965 56778888 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 467 aL~~~p~ 473 (590)
T PRK13409 467 CLSRDAD 473 (590)
T ss_pred HHhcCCC
Confidence 9999986
No 323
>PLN03130 ABC transporter C family member; Provisional
Probab=99.73 E-value=5.8e-19 Score=155.85 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=101.3
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|.+ ..+|++++ |+.++|+|++|||||||+++|.+++.|++|+|.++| .++...+. ...|+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG-~dI~~i~l--~~LR~ 1313 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDG-CDISKFGL--MDLRK 1313 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC-EecccCCH--HHHHh
Confidence 4899999 99964 36899998 789999999999999999999999999999999998 44422111 12467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
+|++|+|+| .+|.. |+++|+..+. ...++++.++++.+++.. +....
T Consensus 1314 ~IsiVpQdp---------~LF~G-TIreNLd~~~---------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~n 1374 (1622)
T PLN03130 1314 VLGIIPQAP---------VLFSG-TVRFNLDPFN---------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374 (1622)
T ss_pred ccEEECCCC---------ccccc-cHHHHhCcCC---------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCC
Confidence 899999997 35654 9999997642 234567788888776643 12245
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +||||+..+|+
T Consensus 1375 LSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 666 44 99999999986
No 324
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.73 E-value=1.7e-16 Score=114.46 Aligned_cols=137 Identities=35% Similarity=0.543 Sum_probs=93.3
Q ss_pred eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHh-hCCCceeEEEEE
Q psy17514 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYK-NGQAGVTKASVT 79 (159)
Q Consensus 2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~-~~~~~~~~~~i~ 79 (159)
|+..|++.||++|.+.....++++.+++|+||||+||||+++||..++....+ .++....+++++. ........+.|.
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 57889999999997555556788999999999999999999999888764322 4555544455443 222233567888
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM 145 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 145 (159)
..|++++... . ...+...+.+.+.......+.+++.....+.+.+.+..+.+... .+|+
T Consensus 81 ~~~~~~~~~~-~---~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~---~lSg 139 (220)
T PF02463_consen 81 LIFDNSDEEF-E---LDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE---FLSG 139 (220)
T ss_dssp EEEECTTEES-S---SSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT---GS-H
T ss_pred cccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccc---cccc
Confidence 8887754220 0 12345677777777766678999999988889999988887754 5555
No 325
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.73 E-value=1.1e-18 Score=152.85 Aligned_cols=93 Identities=17% Similarity=0.109 Sum_probs=73.4
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ ++|++ ..+|++++ |++++|+||||||||||+++|+|++.|++|+|.+++-.++... . ..+.+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~-~-~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-N-LKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC-C-HHHHH
Confidence 5899999 99975 35888888 7899999999999999999999999999999999431333211 1 12246
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcC
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIP 109 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~ 109 (159)
+.|++|+|++ .+|+ .|+.+|+.++
T Consensus 460 ~~Ig~V~Q~~---------~LF~-~TI~eNI~~g 483 (1466)
T PTZ00265 460 SKIGVVSQDP---------LLFS-NSIKNNIKYS 483 (1466)
T ss_pred HhccEecccc---------cchh-ccHHHHHHhc
Confidence 7899999986 3565 4999999886
No 326
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.5e-18 Score=140.90 Aligned_cols=125 Identities=10% Similarity=0.136 Sum_probs=91.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|+++.+|.+++ |++++|+|||||||||||++|+|+++|++|+|.+.+ ...|
T Consensus 312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK--------------GIKL 377 (638)
T ss_pred eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC--------------CEEE
Confidence 4899999 9998888899888 789999999999999999999999999999998743 1368
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~ia 150 (159)
+|++|.+.. .+.+..++.+++.. . .......++.++++.+++.. ..+..||+ |+ ++|
T Consensus 378 gy~~Q~~~~-------~l~~~~~~~~~~~~-----~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La 442 (638)
T PRK10636 378 GYFAQHQLE-------FLRADESPLQHLAR-----L---APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442 (638)
T ss_pred EEecCcchh-------hCCccchHHHHHHH-----h---CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH
Confidence 999986311 12233343332210 0 11123467889999999952 35667777 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 443 ~~l~~~p~ 450 (638)
T PRK10636 443 LIVWQRPN 450 (638)
T ss_pred HHHhcCCC
Confidence 99999885
No 327
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.1e-19 Score=143.78 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=94.8
Q ss_pred EEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 6 MVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 6 l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
++++++. + ..++++++ |++++|+||||||||||+++|+|+++|++|+|+++| +++.. .......+..+++
T Consensus 258 l~~~~~~-~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i~~ 332 (501)
T PRK11288 258 LRLDGLK-G--PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG-KPIDI-RSPRDAIRAGIML 332 (501)
T ss_pred EEEeccc-c--CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECC-EECCC-CCHHHHHhCCCEE
Confidence 6666662 1 13567776 789999999999999999999999999999999877 22210 0000112457999
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE----ECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---h
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM----INGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---R 148 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~ 148 (159)
++|++.. ..+++.+|+.+|+.++...... ........+++.++++.+++. . ..+..||+ |+ +
T Consensus 333 ~~q~~~~------~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~ 406 (501)
T PRK11288 333 CPEDRKA------EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAI 406 (501)
T ss_pred cCcCHhh------CCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHH
Confidence 9998520 0256667888888764321100 001111234678899999994 2 45678887 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
||++++.+|+
T Consensus 407 la~al~~~p~ 416 (501)
T PRK11288 407 LGRWLSEDMK 416 (501)
T ss_pred HHHHHccCCC
Confidence 9999999986
No 328
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.72 E-value=1.3e-18 Score=140.83 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=95.7
Q ss_pred EEEEeCe-eeecCC-----eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCce
Q psy17514 5 SMVLDGF-KSYGTR-----VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~~-----~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 73 (159)
.|+++|+ .+|++. .+|++++ |++++|+||||||||||+++|+|+++|++|+|.++| .++.... ...
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g-~~i~~~~--~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG-AAVSADS--RDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCCCC--HHH
Confidence 5899999 999752 4788888 789999999999999999999999999999999987 3321100 112
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---------CCCeeEE
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---------NNPHFLI 144 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~l~ 144 (159)
.+..+++++|++ .+|+. |+.+|.. .....+++.++++.+++.. +....+|
T Consensus 414 ~~~~i~~v~q~~---------~lf~~-ti~~n~~-----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 414 YRDLFSAIFADF---------HLFDD-LIGPDEG-----------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred HHhhCcEEccCh---------hhhhh-hhhcccc-----------cchhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 356799999985 24443 6666631 1234567888899998865 1224577
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ +|||++..+|+
T Consensus 473 gGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRP 490 (555)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 6 43 99999999986
No 329
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.72 E-value=1.3e-18 Score=125.95 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=82.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR 104 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~ 104 (159)
|++++|+|+||||||||+++|+|+++|++|+|.++| +++. ..++.++|++|++.- .....+|+.+
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~-------~~~~~i~~v~q~~~~-------~~~~~~tv~~ 70 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-ASPG-------KGWRHIGYVPQRHEF-------AWDFPISVAH 70 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-ccch-------HhhCcEEEecccccc-------cCCCCccHHH
Confidence 899999999999999999999999999999999988 3321 124579999998521 0112357777
Q ss_pred EEEcCCceEEE-E-CCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 105 QISIPSNTRYM-I-NGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 105 ~i~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
|+.++...... . .......+++.++++.+++.. ..+..+|+ |+ +||++++.+|+
T Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 133 (223)
T TIGR03771 71 TVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPS 133 (223)
T ss_pred HHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 76554210000 0 011122356788999999975 45667777 33 99999999986
No 330
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.71 E-value=3.4e-19 Score=124.97 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=48.4
Q ss_pred EEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 7 VLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 7 ~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|+++|++|++++++
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g 60 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 46788 8898777888887 689999999999999999999999999999998876
No 331
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.71 E-value=1.4e-18 Score=131.96 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=109.2
Q ss_pred eEEEEEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc-----ccchhhhhHHHHHH
Q psy17514 2 YIKSMVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ-----VKQVRANTLQELIY 66 (159)
Q Consensus 2 ~~~~l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~-----~g~i~~~~~~~~~~ 66 (159)
....|+++|+ ..|. ...+++++| ||.++|+|+||||||-...+|.++++.. +|+|.++| .++..
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G-~dll~ 81 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG-EDLLA 81 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC-hhhhc
Confidence 3456899999 8886 566788887 7999999999999999999999999652 68899998 56653
Q ss_pred hhC--CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc------C
Q psy17514 67 KNG--QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV------N 138 (159)
Q Consensus 67 ~~~--~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~ 138 (159)
... -...+..+|+++||+|.-+ +.|-+|+.+++.-..+.... -++.+...++.++|+.+||.. .
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtS-------LNPl~tIg~Qi~E~l~~Hrg-~~~~~Ar~r~lelL~~VgI~~p~~rl~~ 153 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTS-------LNPLHTIGKQLAEVLRLHRG-LSRAAARARALELLELVGIPEPEKRLDA 153 (534)
T ss_pred CCHHHHhhhcccceEEEecccccc-------cCcHhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHcCCCchhhhhhh
Confidence 221 1223456899999998654 44445666665443221111 123445678999999999975 5
Q ss_pred CCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 139 NPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 139 ~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
+|.++|+ |+ .||+||+++|+
T Consensus 154 yPHeLSGGqRQRVMIAMALan~P~ 177 (534)
T COG4172 154 YPHELSGGQRQRVMIAMALANEPD 177 (534)
T ss_pred CCcccCcchhhHHHHHHHHcCCCC
Confidence 8999999 44 99999999997
No 332
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.71 E-value=5.5e-19 Score=141.09 Aligned_cols=143 Identities=12% Similarity=0.096 Sum_probs=92.8
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.+ ..++++++ |++++|+||||||||||+++|+|+.+|++|+|.++| +++.. .......++.+
T Consensus 250 ~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~-~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG-KKINN-HNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC-EECCC-CCHHHHHHCCC
Confidence 4889999 653 34677777 799999999999999999999999999999999887 33211 00001124568
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEE-----EEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch-
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQ-----ISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG- 147 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~-----i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~- 147 (159)
++++|++... .+++++++.+| +..... .+.........+.+.++++.+++. . ..+..||+ |+
T Consensus 326 ~~~~q~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 326 ALVTEERRST------GIYAYLDIGFNSLISNIRNYKN-KVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred EEcCCchhhC------CcccCCcHHHheehhhhhhhcc-cccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 9999875211 23444444333 321110 000001112235678889998884 2 45778888 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 399 rv~la~al~~~p~ 411 (491)
T PRK10982 399 KVIIGRWLLTQPE 411 (491)
T ss_pred HHHHHHHHhcCCC
Confidence 99999999986
No 333
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.71 E-value=1.4e-18 Score=151.86 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=100.0
Q ss_pred EEEeCe-eeec----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC---CcccchhhhhHHHHHHhhCCCc
Q psy17514 6 MVLDGF-KSYG----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG---IQVKQVRANTLQELIYKNGQAG 72 (159)
Q Consensus 6 l~l~~~-~~~~----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~~~~~~~~~~~~~~~~ 72 (159)
|+++|+ +.|+ .+.+|++++ |++++|+|||||||||||++|+|... +++|+|.++| .++. .
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G-~~~~------~ 832 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG-RPLD------S 832 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECC-EECC------h
Confidence 788999 8884 457899998 68999999999999999999999987 6789999988 3321 1
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC---CEEeCHHHHHHHHHhcCccc--CCCe-----e
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN---GSSVNPKRVSDLFSSVNLNV--NNPH-----F 142 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~--~~~~-----~ 142 (159)
..++.+++++|++ .+++.+||+|++.+... .+.. ......+++.++++.++|.. +... .
T Consensus 833 ~~~~~i~yv~Q~~---------~~~~~~Tv~E~L~~~a~--l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~ 901 (1394)
T TIGR00956 833 SFQRSIGYVQQQD---------LHLPTSTVRESLRFSAY--LRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEG 901 (1394)
T ss_pred hhhcceeeecccc---------cCCCCCCHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCC
Confidence 1356799999985 35677899999987532 1111 11122356789999999975 2221 4
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +||++|+.+|+
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~ 921 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPK 921 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCC
Confidence 666 44 99999999995
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=6.6e-18 Score=139.55 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=90.3
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.|++ ..+|.+++ +++++|+|||||||||||++|+|+++|++|+|++.+ +..
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~--------------~~~ 573 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA--------------KVR 573 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC--------------cee
Confidence 4899999 99964 56888888 689999999999999999999999999999997642 246
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch---hH
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG---RV 149 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~---~i 149 (159)
|+|++|++. +.+++.++........+ .+ ...+++.++++.+++.. ..+..||+ |+ +|
T Consensus 574 igyv~Q~~~-----------~~l~~~~~~~~~~~~~~--~~--~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaL 638 (718)
T PLN03073 574 MAVFSQHHV-----------DGLDLSSNPLLYMMRCF--PG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 638 (718)
T ss_pred EEEEecccc-----------ccCCcchhHHHHHHHhc--CC--CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHH
Confidence 999998741 11233333221100000 11 23467889999999963 35677777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++++.+|+
T Consensus 639 AraL~~~p~ 647 (718)
T PLN03073 639 AKITFKKPH 647 (718)
T ss_pred HHHHhcCCC
Confidence 999999985
No 335
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.71 E-value=8.6e-18 Score=125.41 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=82.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +. ...+|.+++ |++++|+||||||||||+++|+|+++|++|+|.+++ .|
T Consensus 39 ~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------------~i 100 (282)
T cd03291 39 NLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------------RI 100 (282)
T ss_pred eEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------------EE
Confidence 5888999 53 456788887 789999999999999999999999999999998754 38
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEE
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLI 144 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~ 144 (159)
+|++|++ .+++ .|+.+|+.++.. . ...++.+.++.+++.. ..+..+|
T Consensus 101 ~yv~q~~---------~l~~-~tv~enl~~~~~--~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LS 161 (282)
T cd03291 101 SFSSQFS---------WIMP-GTIKENIIFGVS--Y-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS 161 (282)
T ss_pred EEEeCcc---------cccc-cCHHHHhhcccc--c-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCC
Confidence 9999885 2444 388888876421 1 1122333344333321 1234666
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ ++|++++.+|+
T Consensus 162 gGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 162 GGQRARISLARAVYKDAD 179 (282)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 6 33 99999999986
No 336
>KOG0056|consensus
Probab=99.71 E-value=1.3e-17 Score=129.66 Aligned_cols=133 Identities=14% Similarity=0.174 Sum_probs=100.3
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.++++|+ ..|+ ++++|.++| |..++|+||+|+||||+++.+..+.+..+|.|.++| +|+.+... ...|..
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDg-qdIrnvt~--~SLRs~ 613 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDG-QDIRNVTQ--SSLRSS 613 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcC-chHHHHHH--HHHHHh
Confidence 5889999 9996 578999998 678999999999999999999999999999999999 66643222 225788
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
||+|+|+. .+|. -|+..||.++. ..+..+++.+..+..++.+ +.--.+
T Consensus 614 IGVVPQDt---------vLFN-dTI~yNIryak--------~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkL 675 (790)
T KOG0056|consen 614 IGVVPQDT---------VLFN-DTILYNIRYAK--------PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKL 675 (790)
T ss_pred cCcccCcc---------eeec-ceeeeheeecC--------CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccccc
Confidence 99999985 3444 38888888753 2234466666666665543 223345
Q ss_pred Ee---Ch-hHhHhhcCCCC
Q psy17514 144 IM---QG-RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~---q~-~ia~~l~~~p~ 158 (159)
|+ |+ +|||.+..+|.
T Consensus 676 SGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 676 SGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CCcchhhHHHHHHHhcCCc
Confidence 55 44 99999999884
No 337
>PTZ00243 ABC transporter; Provisional
Probab=99.70 E-value=2.9e-18 Score=151.15 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=100.6
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|.+ ..+|++++ |+.++|+|++|||||||+++|.+++.|++|+|.++| .++...+. ...++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG-~di~~i~l--~~LR~ 1384 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNG-REIGAYGL--RELRR 1384 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEcccCCH--HHHHh
Confidence 4899999 99965 34899998 789999999999999999999999999999999998 44422111 12467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|+| .+|+. |+++||.... ..+.+++.++++.+++.. +.-..
T Consensus 1385 ~I~iVpQdp---------~LF~g-TIreNIdp~~---------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~n 1445 (1560)
T PTZ00243 1385 QFSMIPQDP---------VLFDG-TVRQNVDPFL---------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSN 1445 (1560)
T ss_pred cceEECCCC---------ccccc-cHHHHhCccc---------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCc
Confidence 899999997 35654 9999996431 234577888888887753 12245
Q ss_pred EEe-Ch---hHhHhhcCC-CC
Q psy17514 143 LIM-QG---RVTKVLNMK-PH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~-p~ 158 (159)
||+ |+ +|||||..+ |+
T Consensus 1446 LSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1446 YSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCC
Confidence 666 44 999999985 54
No 338
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.70 E-value=4.9e-18 Score=117.34 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=50.5
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
|+++|+ +.|++.+++.+++ +++++|+||||||||||+++|+|+.+|++|++++++
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g 61 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG 61 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 468899 9998888888887 789999999999999999999999999999999877
No 339
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=2.4e-19 Score=126.10 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=92.8
Q ss_pred EEEeCe-eeec-----CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 6 MVLDGF-KSYG-----TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~-----~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
+.+.|. +.|. ++++|.+++ ++++.|+|.||||||||+++|+|-+.|++|.|++++ .++.+... ..+
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg-~dVtk~~~--~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG-VDVTKKSV--AKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECc-eecccCCH--HHH
Confidence 455666 5543 245666666 789999999999999999999999999999999998 55533221 113
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCce----EEEECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNT----RYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLIM- 145 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~- 145 (159)
...++-|||+|.. ...+++|++||+.+...+ .+...-.....+...+.++.+++.. ..+..++|
T Consensus 79 A~~larVfQdp~~-------gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSG 151 (263)
T COG1101 79 ANLLARVFQDPLA-------GTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSG 151 (263)
T ss_pred hhHHHHHhcchhh-------CCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccc
Confidence 3468889999854 357789999999874321 1110000112345566677776654 34555444
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ .+.++....|+
T Consensus 152 GQRQalsL~MAtl~~pk 168 (263)
T COG1101 152 GQRQALSLLMATLHPPK 168 (263)
T ss_pred hHHHHHHHHHHhcCCCc
Confidence 55 45555555554
No 340
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.70 E-value=5.5e-18 Score=134.26 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=86.5
Q ss_pred EEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 6 MVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 6 l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
++++|+ +.|+. +.+|.+++ |++++|+|||||||||||++|+|+++|++|+|.+++. + .
T Consensus 22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~-~------------~ 88 (549)
T PRK13545 22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS-A------------A 88 (549)
T ss_pred eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCE-e------------e
Confidence 566666 56655 35788887 7899999999999999999999999999999988761 1 1
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.+.+ .+ .+.+.+|+.+|+.+... +.........+++.++++.++|.. ..+..+|+ |+ ++
T Consensus 89 ~i~~---~~---------~l~~~lTV~EnL~l~~~--~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaL 154 (549)
T PRK13545 89 LIAI---SS---------GLNGQLTGIENIELKGL--MMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGF 154 (549)
T ss_pred eEEe---cc---------ccCCCCcHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence 1111 11 23445688888765321 110011112345667889999865 45667777 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++|+.+|+
T Consensus 155 ArAL~~~P~ 163 (549)
T PRK13545 155 AISVHINPD 163 (549)
T ss_pred HHHHHhCCC
Confidence 999999986
No 341
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.69 E-value=7.5e-19 Score=140.87 Aligned_cols=142 Identities=9% Similarity=0.112 Sum_probs=92.0
Q ss_pred EEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 5 SMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 5 ~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
.|+++|+.. .+|++++ +++++|+||||||||||+++|+|+++|++|+|.+++ +++.. .......+..|+
T Consensus 268 ~l~~~~l~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g-~~i~~-~~~~~~~~~~i~ 341 (510)
T PRK15439 268 VLTVEDLTG----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNG-KEINA-LSTAQRLARGLV 341 (510)
T ss_pred eEEEeCCCC----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECC-EECCC-CCHHHHHhCCcE
Confidence 477888821 1355555 789999999999999999999999999999999877 22211 000001234699
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---hHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~ia 150 (159)
|++|++.. ..+++.+|+.+|+.......... .......+++.++++.++|. . ..+..||+ |+ +||
T Consensus 342 ~v~q~~~~------~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la 415 (510)
T PRK15439 342 YLPEDRQS------SGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIA 415 (510)
T ss_pred ECCCChhh------CCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHH
Confidence 99987411 12556667777764321000000 01111234678899999996 3 45677877 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++++.+|+
T Consensus 416 ~al~~~p~ 423 (510)
T PRK15439 416 KCLEASPQ 423 (510)
T ss_pred HHHhhCCC
Confidence 99999986
No 342
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.69 E-value=5.2e-18 Score=125.55 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=85.0
Q ss_pred EEEEeCe-eeecC--------------------CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 5 SMVLDGF-KSYGT--------------------RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 5 ~l~l~~~-~~~~~--------------------~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
+++++|+ +.|.. +.++.+++ |++++|+||||||||||+++|+|+++|++|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5778888 76643 23566666 7899999999999999999999999999999987
Q ss_pred hhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-
Q psy17514 59 NTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV- 137 (159)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 137 (159)
++. +.+++|.+ .+.+.+|+.+|+.+... ..........+.+.++++.+++..
T Consensus 84 ~g~----------------~~~~~~~~---------~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~ 136 (264)
T PRK13546 84 NGE----------------VSVIAISA---------GLSGQLTGIENIEFKML--CMGFKRKEIKAMTPKIIEFSELGEF 136 (264)
T ss_pred CCE----------------EeEEeccc---------CCCCCCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchh
Confidence 651 23444442 23445688888764311 100011111234456777888765
Q ss_pred --CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 138 --NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 138 --~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
..+..+|+ |. ++|++++.+|+
T Consensus 137 ~~~~~~~LS~Gq~qrv~Laral~~~p~ 163 (264)
T PRK13546 137 IYQPVKKYSSGMRAKLGFSINITVNPD 163 (264)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCC
Confidence 34566766 33 99999999885
No 343
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.69 E-value=4e-18 Score=150.28 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=100.6
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|.+ ..+|+++| |+.++|+|++|||||||+++|.+++.|++|+|.++| .++...+. ...|.
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG-~dI~~i~~--~~LR~ 1360 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG-LNIAKIGL--HDLRF 1360 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECC-EEccccCH--HHHHh
Confidence 4899999 99965 46889888 789999999999999999999999999999999998 44422111 12477
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
+|++++|+| .+|+. |+++|+.... ...++++.++++.+++.. +.-..
T Consensus 1361 ~i~iVpQdp---------~LF~g-TIr~NLdp~~---------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1421 (1522)
T TIGR00957 1361 KITIIPQDP---------VLFSG-SLRMNLDPFS---------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421 (1522)
T ss_pred cCeEECCCC---------cccCc-cHHHHcCccc---------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCc
Confidence 899999997 46664 9999996421 234567777887776642 12245
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +||||+..+|+
T Consensus 1422 LSgGQrQrl~LARALLr~~~ 1441 (1522)
T TIGR00957 1422 LSVGQRQLVCLARALLRKTK 1441 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 666 44 99999999986
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.69 E-value=6.7e-18 Score=138.47 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=51.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
.|+++|+ ++|++..+|.+++ |++++|+|||||||||||++|+|++.|++|+|.+.+
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 3899999 9999888999988 789999999999999999999999999999998754
No 345
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=6.8e-18 Score=123.77 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR 104 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~ 104 (159)
+++++|+||||||||||+++|+|+++|++|++.+++ ..|++++|.+. .+...||.+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g---------------~~i~~~~q~~~---------~~~~~tv~e 80 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL---------------DTVSYKPQYIK---------ADYEGTVRD 80 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC---------------ceEEEeccccc---------CCCCCCHHH
Confidence 789999999999999999999999999999998765 15889988752 234467877
Q ss_pred EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
++..... .. . .......++++.++|.. ..+..+|+ |+ +||++|+.+|+
T Consensus 81 ~l~~~~~-~~---~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 81 LLSSITK-DF---Y--THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred HHHHHhh-hc---c--ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 7654211 01 1 11234677888998864 45677777 33 99999999986
No 346
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.7e-17 Score=113.62 Aligned_cols=142 Identities=18% Similarity=0.251 Sum_probs=97.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh----HHHHHHhhCC--Cc
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT----LQELIYKNGQ--AG 72 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~----~~~~~~~~~~--~~ 72 (159)
.|+++++ |.|+......++| +|+.+|+|++||||||||++|++-+.|+.|.+.+.. ..++....+. ..
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 5889999 9999877777777 689999999999999999999999999999886642 1233221111 11
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEE----cCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeEE
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQIS----IPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFLI 144 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~ 144 (159)
..+..-++|.|+|.+.+.. ..+..-||. .-+...| + .......+||+.+.|+. +.|..+|
T Consensus 86 L~RTeWG~VhQnP~DGLRm-------~VSAG~NiGERlma~G~RHY---G--~iR~~a~~WL~~VEI~~~RiDD~PrtFS 153 (258)
T COG4107 86 LLRTEWGFVHQNPRDGLRM-------QVSAGGNIGERLMAIGARHY---G--NIRAEAQDWLEEVEIDLDRIDDLPRTFS 153 (258)
T ss_pred HhhhccceeecCcccccee-------eeccCCccchhHHhhhhhhh---h--hHHHHHHHHHHhcccCcccccCcccccc
Confidence 1234568999998654311 122222321 1111122 1 23467789999999975 6788999
Q ss_pred e---Ch-hHhHhhcCCCC
Q psy17514 145 M---QG-RVTKVLNMKPH 158 (159)
Q Consensus 145 ~---q~-~ia~~l~~~p~ 158 (159)
+ |+ +|||-|...|+
T Consensus 154 GGMqQRLQiARnLVt~Pr 171 (258)
T COG4107 154 GGMQQRLQIARNLVTRPR 171 (258)
T ss_pred hHHHHHHHHHHHhccCCc
Confidence 8 33 99999999885
No 347
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.68 E-value=4.6e-16 Score=110.59 Aligned_cols=121 Identities=33% Similarity=0.530 Sum_probs=76.7
Q ss_pred EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccc-hhhhhHHHHHHhhCC--CceeEEEEEE
Q psy17514 4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQ-VRANTLQELIYKNGQ--AGVTKASVTL 80 (159)
Q Consensus 4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~-i~~~~~~~~~~~~~~--~~~~~~~i~~ 80 (159)
+.+++.||++|+....+ .+..++++|+||||||||||+++|++++++..+. ++.....+++..+.. .....+.|++
T Consensus 2 ~~~~~~~fr~~~~~~~l-~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (197)
T cd03278 2 KKLELKGFKSFADKTTI-PFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL 80 (197)
T ss_pred cEEEEeCCcCcCCCeee-ecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEE
Confidence 57899999999554434 3555599999999999999999999998776332 222222233322211 1123578999
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe-Ch---hHhHhhc
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM-QG---RVTKVLN 154 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-q~---~ia~~l~ 154 (159)
+||+++. + ++ .. ..+++.++++..+.....+..+|+ |+ ++|++++
T Consensus 81 vfq~~~~---------~----------~~----~~------~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~ 129 (197)
T cd03278 81 TFDNSDG---------R----------YS----II------SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFA 129 (197)
T ss_pred EEEcCCC---------c----------ee----EE------ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHH
Confidence 9999631 1 11 00 124666777774444455677777 33 8888875
No 348
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.68 E-value=4.9e-18 Score=135.49 Aligned_cols=130 Identities=16% Similarity=0.159 Sum_probs=94.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++++ +.|+++.++.+++ ++.++|||+|||||||||++|+|.+.|++|+|...+ ..+|
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~--------------~~~v 68 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK--------------GLRV 68 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC--------------CceE
Confidence 4899999 9999999999988 689999999999999999999999999999987543 2479
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEE-----------------------------EECCEEeCHHHHHHH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRY-----------------------------MINGSSVNPKRVSDL 129 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~-----------------------------~~~~~~~~~~~~~~~ 129 (159)
+++.|++ ..++..||.+.+..+..... ...+ -..+.++..+
T Consensus 69 ~~l~Q~~---------~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~e~~~~~~ 138 (530)
T COG0488 69 GYLSQEP---------PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDG-WTLEARAEEA 138 (530)
T ss_pred EEeCCCC---------CcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcc-cchHHHHHHH
Confidence 9999986 34444566554443321000 0001 1123566777
Q ss_pred HHhcCccc-CC-CeeEEe-Ch---hHhHhhcCCCC
Q psy17514 130 FSSVNLNV-NN-PHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 130 l~~~~l~~-~~-~~~l~~-q~---~ia~~l~~~p~ 158 (159)
+..+++.. +. ...||+ |+ ++|++|..+|+
T Consensus 139 L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pD 173 (530)
T COG0488 139 LLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPD 173 (530)
T ss_pred HhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 88888876 33 356666 44 99999999996
No 349
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.67 E-value=8e-17 Score=109.10 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=49.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
|+++|+ +.|++..++.+++ +++++|+||||||||||+++|+|+++|++|++.+++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~ 61 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC
Confidence 468899 8898777888877 789999999999999999999999999999998865
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.2e-17 Score=136.98 Aligned_cols=139 Identities=13% Similarity=0.133 Sum_probs=88.2
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ ++|+++.+|.++| |++++|+|||||||||||++|+|++.|++|+|.+.+ . ..++
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~-~-------------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG-N-------------WQLA 67 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-C-------------CEEE
Confidence 789999 9999988999998 789999999999999999999999999999998765 1 1367
Q ss_pred EEEEcCCCCCCC-CCc-----cCCCeEEEE------EEE--EcCC-ceEEEECCEEeCHHHHHHHHHhcCccc----CCC
Q psy17514 80 LTFDNSDKKNCP-IGY-----ENDNTIVIC------RQI--SIPS-NTRYMINGSSVNPKRVSDLFSSVNLNV----NNP 140 (159)
Q Consensus 80 ~v~q~~~~~~~~-~~~-----~~~~~~tv~------~~i--~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~ 140 (159)
++.|.+...... .++ ..+..++.. ++. .+.. ...+...+......++.++++.++|.. ..+
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 147 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV 147 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence 777643111000 000 000000000 000 0000 000000011123467889999999952 345
Q ss_pred eeEEe-Ch---hHhHhhcCCCC
Q psy17514 141 HFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 141 ~~l~~-q~---~ia~~l~~~p~ 158 (159)
..||+ |+ ++|++|+.+|+
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~ 169 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSD 169 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCC
Confidence 67777 33 99999999996
No 351
>PRK13409 putative ATPase RIL; Provisional
Probab=99.67 E-value=1.7e-17 Score=134.79 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=83.6
Q ss_pred e-eeecCC-eeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchh-----------hhhHHHHHHhhCCCce
Q psy17514 11 F-KSYGTR-VEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVR-----------ANTLQELIYKNGQAGV 73 (159)
Q Consensus 11 ~-~~~~~~-~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~-----------~~~~~~~~~~~~~~~~ 73 (159)
+ ++|+.. .+|.+++ |++++|+|||||||||||++|+|++.|+.|++. +.| .++.........
T Consensus 79 ~~~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G-~~l~~~~~~~~~ 157 (590)
T PRK13409 79 PVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRG-TELQNYFKKLYN 157 (590)
T ss_pred ceEEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCC-hHHHHHHHHHhc
Confidence 5 678763 5788887 789999999999999999999999999999986 555 333221100000
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-- 147 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-- 147 (159)
....+++.+|..... ..++. .||.+++.. ....+++.++++.++|.. ..+..||+ |.
T Consensus 158 ~~~~~~~~~q~~~~~-----p~~~~-~tv~e~l~~-----------~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 158 GEIKVVHKPQYVDLI-----PKVFK-GKVRELLKK-----------VDERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred cCcceeecccchhhh-----hhhhc-chHHHHHHh-----------hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 122345555532100 01111 155554431 112357888999999964 45667777 33
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
+||++++.+|+
T Consensus 221 v~ia~al~~~p~ 232 (590)
T PRK13409 221 VAIAAALLRDAD 232 (590)
T ss_pred HHHHHHHhcCCC
Confidence 99999999986
No 352
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.4e-18 Score=131.73 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=100.5
Q ss_pred EEEEeCe-eeecCCe--eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGTRV--EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~--~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.++++|+ .+|.+.+ +|+++| ||-++|+|++|||||||+..|+|..+|++|+|+.+| .++...+++ ..+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g-~~~~~l~~~--~~~e 412 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG-VEIASLDEQ--ALRE 412 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC-cChhhCChh--hHHH
Confidence 4899999 9997654 899998 789999999999999999999999999999999998 444332221 1356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CC-----------Cee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NN-----------PHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~-----------~~~ 142 (159)
.++++.|.+ .+|.. |+++|+.... ...+.+++.++++.++|.+ .. -..
T Consensus 413 ~i~vl~Qr~---------hlF~~-Tlr~NL~lA~--------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~ 474 (573)
T COG4987 413 TISVLTQRV---------HLFSG-TLRDNLRLAN--------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRR 474 (573)
T ss_pred HHhhhccch---------HHHHH-HHHHHHhhcC--------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCc
Confidence 789999986 34443 8999987753 3456788999999999865 11 234
Q ss_pred EEe-C--h-hHhHhhcCCC
Q psy17514 143 LIM-Q--G-RVTKVLNMKP 157 (159)
Q Consensus 143 l~~-q--~-~ia~~l~~~p 157 (159)
+|+ + + +|||++..+.
T Consensus 475 LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 475 LSGGERRRLALARALLHDA 493 (573)
T ss_pred CCchHHHHHHHHHHHHcCC
Confidence 555 2 2 9999998764
No 353
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.66 E-value=2.3e-19 Score=120.36 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=77.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR 104 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~ 104 (159)
+++++|+|+||||||||+++|+|...|+.|.|.+++ .++.. ......+..+++++|++ .+++.+|+.+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~-~~~~~--~~~~~~~~~i~~~~~~~---------~~~~~~tv~~ 78 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILING-KDISD--IDIEELRRRIGYVPQDP---------QLFPGLTVRE 78 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETT-EEGTT--SHHHHHHHTEEEEESSH---------CHHTTSBHHH
T ss_pred CCEEEEEccCCCccccceeeeccccccccccccccc-ccccc--ccccccccccccccccc---------cccccccccc
Confidence 799999999999999999999999999999998876 22211 00111356799999884 3555566666
Q ss_pred EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---C----CCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---N----NPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~----~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
+ ....++.++++.+++.. . ....+|+ |+ +||++++.+|+
T Consensus 79 ~---------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~ 128 (137)
T PF00005_consen 79 N---------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPK 128 (137)
T ss_dssp H---------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSS
T ss_pred c---------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 5 23456788888887754 2 2366666 33 99999999885
No 354
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.66 E-value=3.4e-15 Score=129.36 Aligned_cols=147 Identities=33% Similarity=0.579 Sum_probs=104.5
Q ss_pred EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHhhCC-CceeEEEEEE
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYKNGQ-AGVTKASVTL 80 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~~~~-~~~~~~~i~~ 80 (159)
+.+|.+.||++|.+...+ +++.++++|+|||||||||+|+||.++++...+ ..+...+.++++.+.. .....+.|.+
T Consensus 2 i~~l~l~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~ 80 (1164)
T TIGR02169 2 IERIELENFKSFGKKKVI-PFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTV 80 (1164)
T ss_pred eeEEEEeCeeeECCeeEE-eecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEE
Confidence 678999999999875555 588899999999999999999999999876532 3444444566654111 1223567888
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEc--CCc-eEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISI--PSN-TRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~--~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p 157 (159)
+|.+.+.. +....+|.+.+.. .+. +.|++++.+...+.+.+++..+++..... .+..||.+..++.+.|
T Consensus 81 ~f~~~~~~-------~~~~~~i~r~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~-~~~~qg~~~~~~~~~~ 152 (1164)
T TIGR02169 81 TFKNDDGK-------FPDELEVVRRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPEGY-NVVLQGDVTDFISMSP 152 (1164)
T ss_pred EEEcCCCC-------CCCcEEEEEEEEEcCCCCcceEEECCccccHHHHHHHHHHcCCCcCcc-eEEecchHHHHHCCCH
Confidence 88764321 1133456554443 333 46889999888889999999999987544 3567998888888877
Q ss_pred C
Q psy17514 158 H 158 (159)
Q Consensus 158 ~ 158 (159)
.
T Consensus 153 ~ 153 (1164)
T TIGR02169 153 V 153 (1164)
T ss_pred H
Confidence 5
No 355
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.66 E-value=4.1e-16 Score=111.42 Aligned_cols=75 Identities=28% Similarity=0.478 Sum_probs=53.9
Q ss_pred EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHh----CCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL----GIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
..|+++||++|.....+ .++.++++|+|||||||||||++|++++ .+..+.+. ...+.+... ...+.|+
T Consensus 2 ~~l~l~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~--~~~~~i~~~----~~~~~v~ 74 (204)
T cd03240 2 DKLSIRNIRSFHERSEI-EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA--HDPKLIREG----EVRAQVK 74 (204)
T ss_pred cEEEEECcccccCceEE-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc--chHHHHhCC----CCcEEEE
Confidence 57899999996555444 4777899999999999999999997554 44444443 223444322 2467899
Q ss_pred EEEEcC
Q psy17514 80 LTFDNS 85 (159)
Q Consensus 80 ~v~q~~ 85 (159)
++||++
T Consensus 75 ~~f~~~ 80 (204)
T cd03240 75 LAFENA 80 (204)
T ss_pred EEEEeC
Confidence 999985
No 356
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.66 E-value=5.8e-18 Score=138.42 Aligned_cols=126 Identities=15% Similarity=0.200 Sum_probs=92.4
Q ss_pred CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514 16 TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK 87 (159)
Q Consensus 16 ~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 87 (159)
++.+|++++ |++++|+|||||||||||++|+|...+. .|+|.++|. ++. ....++.+++++|++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~-~~~-----~~~~~~~i~yv~Q~~-- 108 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM-PID-----AKEMRAISAYVQQDD-- 108 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE-ECC-----HHHHhhhceeecccc--
Confidence 566888888 6899999999999999999999998774 788988872 211 011356799999985
Q ss_pred CCCCCCccCCCeEEEEEEEEcCCceEEEECC---EEeCHHHHHHHHHhcCccc--CCC-------eeEEe-Ch---hHhH
Q psy17514 88 KNCPIGYENDNTIVICRQISIPSNTRYMING---SSVNPKRVSDLFSSVNLNV--NNP-------HFLIM-QG---RVTK 151 (159)
Q Consensus 88 ~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~~~-------~~l~~-q~---~ia~ 151 (159)
.+++.+||+||+.++.. ++... .....+++.++++.++|.+ +.. ..+|+ |+ .||+
T Consensus 109 -------~~~~~lTV~e~l~f~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~ 179 (617)
T TIGR00955 109 -------LFIPTLTVREHLMFQAH--LRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFAS 179 (617)
T ss_pred -------ccCccCcHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHH
Confidence 47788999999987543 22111 1223456889999999965 222 24777 44 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 180 aL~~~p~ 186 (617)
T TIGR00955 180 ELLTDPP 186 (617)
T ss_pred HHHcCCC
Confidence 9999986
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.65 E-value=3.2e-17 Score=144.37 Aligned_cols=131 Identities=12% Similarity=0.136 Sum_probs=99.1
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|.. ..+|++++ |+.++|+|+||||||||+++|.++.. .+|+|.++| .++...+. ...|.
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG-~di~~i~~--~~lR~ 1292 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDG-VSWNSVTL--QTWRK 1292 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECC-EEcccCCH--HHHHh
Confidence 5899999 99964 57899998 78999999999999999999999987 789999998 34321111 12467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---C-----------CCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---N-----------NPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~-----------~~~~ 142 (159)
+|++++|+| .+|+. |+++|+.... ...++++.++++.++|.. . .-..
T Consensus 1293 ~is~IpQdp---------~LF~G-TIR~NLdp~~---------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~n 1353 (1490)
T TIGR01271 1293 AFGVIPQKV---------FIFSG-TFRKNLDPYE---------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYV 1353 (1490)
T ss_pred ceEEEeCCC---------ccCcc-CHHHHhCccc---------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCc
Confidence 899999997 35654 9999995431 234678888888887743 1 1124
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||+|..+|+
T Consensus 1354 LSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271 1354 LSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 555 43 99999999886
No 358
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.2e-17 Score=119.58 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=74.9
Q ss_pred CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCC
Q psy17514 17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCP 91 (159)
Q Consensus 17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 91 (159)
..+|+++| |+.++|+|+|||||||||+.|+|+++|++|++...|. |+..+.-.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~----------------v~~li~lg------ 97 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK----------------VAPLIELG------ 97 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce----------------Eehhhhcc------
Confidence 45788888 6889999999999999999999999999999988761 22222111
Q ss_pred CCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CCCeeEEeCh
Q psy17514 92 IGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIMQG 147 (159)
Q Consensus 92 ~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~q~ 147 (159)
..+.|++|.++|+.+-+. +.--...+.++.++++.+...|.+ +.|..-.|.|
T Consensus 98 --~Gf~pelTGreNi~l~~~--~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSG 151 (249)
T COG1134 98 --AGFDPELTGRENIYLRGL--ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSG 151 (249)
T ss_pred --cCCCcccchHHHHHHHHH--HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHH
Confidence 135567899999987433 221124455677888888888876 6675444544
No 359
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.64 E-value=1.3e-15 Score=109.46 Aligned_cols=80 Identities=30% Similarity=0.456 Sum_probs=56.7
Q ss_pred CeEEEEEEeCeeeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHh-CCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVL-GIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
|.+.+|+++||++|.+...+. ++ +++++|+|||||||||||++|++.+ .+..+........+.+.. ....
T Consensus 1 m~~~~i~l~nf~~y~~~~~i~-~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~----~~~~ 75 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVID-FTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAP----GEDT 75 (213)
T ss_pred CEEEEEEEECCcCcCCceEEe-CCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcC----CCcc
Confidence 788899999999987665443 43 5699999999999999999999755 344343333222233321 1246
Q ss_pred EEEEEEEEcC
Q psy17514 76 ASVTLTFDNS 85 (159)
Q Consensus 76 ~~i~~v~q~~ 85 (159)
+.|+++||++
T Consensus 76 ~~v~~~f~~~ 85 (213)
T cd03279 76 AEVSFTFQLG 85 (213)
T ss_pred EEEEEEEEEC
Confidence 7899999985
No 360
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.63 E-value=5.9e-17 Score=126.01 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=95.2
Q ss_pred EEEEeCe-eee--cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSY--GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~--~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|.++++ ..= .+++++.+++ |+..+||||||||||||.++|.|..+|.+|.+|.+| -++.+.+.+ ...+
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDg-a~l~qWd~e--~lG~ 410 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG-ADLRQWDRE--QLGR 410 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecc-hhhhcCCHH--Hhcc
Confidence 4777777 322 2356788888 689999999999999999999999999999999999 555443332 2468
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
+|+|.+|+- .+|+. ||.|||.-.. ...+.+.+.+..+..+..+ +.-..
T Consensus 411 hiGYLPQdV---------eLF~G-TIaeNIaRf~--------~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~ 472 (580)
T COG4618 411 HIGYLPQDV---------ELFDG-TIAENIARFG--------EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGAT 472 (580)
T ss_pred ccCcCcccc---------eecCC-cHHHHHHhcc--------ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCC
Confidence 999999984 57775 8999986532 2233344444444433321 23356
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
||+ |+ .+||++..+|.
T Consensus 473 LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 473 LSGGQRQRIALARALYGDPF 492 (580)
T ss_pred CCchHHHHHHHHHHHcCCCc
Confidence 777 54 99999999985
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=99.63 E-value=1.8e-16 Score=140.28 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=92.7
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcc-cchhhhhHHHHHHhhCCCcee
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQV-KQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~-g~i~~~~~~~~~~~~~~~~~~ 74 (159)
.++++|+ .+|+. ..+|++++ |++++|+||+|||||||+++|.|.+++.+ |++.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l---------------- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI---------------- 677 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----------------
Confidence 4889999 89964 46788888 78999999999999999999999999998 88753
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCC
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNP 140 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~ 140 (159)
+..|+|++|+| -++. -|+++||.++.. .+++++.++++..+|.. +.-
T Consensus 678 ~~~Iayv~Q~p---------~Lfn-gTIreNI~fg~~---------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G 738 (1622)
T PLN03130 678 RGTVAYVPQVS---------WIFN-ATVRDNILFGSP---------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERG 738 (1622)
T ss_pred cCeEEEEcCcc---------ccCC-CCHHHHHhCCCc---------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCC
Confidence 34699999996 2343 599999998732 23466777777666532 233
Q ss_pred eeEEe-Ch---hHhHhhcCCCC
Q psy17514 141 HFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 141 ~~l~~-q~---~ia~~l~~~p~ 158 (159)
..||+ |+ ++|||+..+|+
T Consensus 739 ~~LSGGQKQRIaLARAly~~~~ 760 (1622)
T PLN03130 739 VNISGGQKQRVSMARAVYSNSD 760 (1622)
T ss_pred CCCCHHHHHHHHHHHHHhCCCC
Confidence 46777 44 99999999886
No 362
>KOG0979|consensus
Probab=99.63 E-value=5.9e-15 Score=121.56 Aligned_cols=136 Identities=26% Similarity=0.443 Sum_probs=106.6
Q ss_pred EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|.+|+++||.+|.... ..+.+.++.|+||||+||||+..|||..++.. -|+-.-. .+++.++. ....|.
T Consensus 22 IvrI~l~NF~Ty~~~e--~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~V--geyIK~G~----~~g~IE 93 (1072)
T KOG0979|consen 22 IVRIELHNFLTYDHTE--FLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKV--GEYIKRGE----DEGYIE 93 (1072)
T ss_pred eEEEEEeeeeeeeeee--ecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHH--HHHHhcCC----ccceEE
Confidence 5579999999997765 24668999999999999999999999888654 2322222 25566554 445677
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p 157 (159)
+..-+. ..++++.+.|.....+.|++|+...+++.+.++.+.++++.+|++++++|..++.+.-..|
T Consensus 94 I~l~~~-----------~e~~~ItR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~p 160 (1072)
T KOG0979|consen 94 IELKDK-----------DETLTITRLISRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSP 160 (1072)
T ss_pred EEEecC-----------CCceEEEEEEeecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCCh
Confidence 666542 2356888888887778899999999999999999999999999999999998877776665
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=99.63 E-value=5.3e-17 Score=142.23 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=96.7
Q ss_pred EEEEeCe-eeec-------------CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC--cccchhhhhHHH
Q psy17514 5 SMVLDGF-KSYG-------------TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI--QVKQVRANTLQE 63 (159)
Q Consensus 5 ~l~l~~~-~~~~-------------~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i~~~~~~~ 63 (159)
.+.++|+ ..++ .+.+|++++ |++++|+|||||||||||++|+|...+ ..|++.++|. +
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~-~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF-P 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc-c
Confidence 3677777 5542 346888888 689999999999999999999998753 5788988872 2
Q ss_pred HHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC---EEeCHHHHHHHHHhcCccc--C
Q psy17514 64 LIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING---SSVNPKRVSDLFSSVNLNV--N 138 (159)
Q Consensus 64 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~ 138 (159)
.. ....++.++|++|++ .+++.+||+|++.+... .+... .....+.+.++++.++|.. +
T Consensus 946 ~~-----~~~~~~~igyv~Q~d---------~~~~~lTV~E~L~~~a~--lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~ 1009 (1470)
T PLN03140 946 KK-----QETFARISGYCEQND---------IHSPQVTVRESLIYSAF--LRLPKEVSKEEKMMFVDEVMELVELDNLKD 1009 (1470)
T ss_pred CC-----hHHhhhheEEEcccc---------ccCCCCcHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHHHCCChhHhC
Confidence 10 011345689999985 46778899999987532 11111 1112345788999999975 2
Q ss_pred CC------eeEEe-Ch---hHhHhhcCCCC
Q psy17514 139 NP------HFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 139 ~~------~~l~~-q~---~ia~~l~~~p~ 158 (159)
.. ..+|+ |+ .||++|+.+|+
T Consensus 1010 ~~vg~~~~~~LSgGerkRvsIa~aL~~~P~ 1039 (1470)
T PLN03140 1010 AIVGLPGVTGLSTEQRKRLTIAVELVANPS 1039 (1470)
T ss_pred CccCCCCCCCcCHHHHHHHHHHHHHhhCCC
Confidence 22 35777 44 99999999996
No 364
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.62 E-value=7.6e-16 Score=107.55 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=45.6
Q ss_pred eCe-eeecCCeeeecC----CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 9 DGF-KSYGTRVEINDF----DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 9 ~~~-~~~~~~~~l~~~----~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
.|+ +.|++..++.+. .+++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 60 (177)
T cd03222 4 PDCVKRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG 60 (177)
T ss_pred CCeEEEECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC
Confidence 577 889887777654 2799999999999999999999999999999998865
No 365
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.62 E-value=3.1e-16 Score=138.52 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=88.5
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.++++|+ ..|++ ..+|++++ |++++|+||||||||||+++|.|.++|++|++.+++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 699 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------------- 699 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----------------
Confidence 5889999 89964 46788887 799999999999999999999999999999997653
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc--------------cCCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN--------------VNNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------------~~~~~~ 142 (159)
.|+|++|++ .++ +.|+++|+.++.. + ..++..++++..++. .+....
T Consensus 700 ~i~yv~Q~~---------~l~-~~Ti~eNI~~g~~--~-------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~ 760 (1522)
T TIGR00957 700 SVAYVPQQA---------WIQ-NDSLRENILFGKA--L-------NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN 760 (1522)
T ss_pred EEEEEcCCc---------ccc-CCcHHHHhhcCCc--c-------CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCC
Confidence 489999986 233 3599999998632 1 122333333222211 134667
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ ++||++..+|+
T Consensus 761 LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 887 44 99999999986
No 366
>PLN03232 ABC transporter C family member; Provisional
Probab=99.61 E-value=2.7e-16 Score=138.68 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=92.4
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.++++|+ .+|+. .++|++++ |+.++|+||+|||||||+++|.|.++|.+|.+.. .+
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~---------------~~ 678 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV---------------IR 678 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---------------ec
Confidence 4889999 89964 46788888 7899999999999999999999999998876531 34
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
..|+|++|+| .+++ -|+++||.++. +..++++.++++..++.. +.-.
T Consensus 679 ~~Iayv~Q~p---------~Lf~-gTIreNI~fg~---------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~ 739 (1495)
T PLN03232 679 GSVAYVPQVS---------WIFN-ATVRENILFGS---------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV 739 (1495)
T ss_pred CcEEEEcCcc---------cccc-ccHHHHhhcCC---------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc
Confidence 5799999996 2443 49999999873 124566777777666532 2334
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.||+ |+ ++|||+..+|+
T Consensus 740 ~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCC
Confidence 6777 44 99999999986
No 367
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.59 E-value=9.1e-17 Score=140.72 Aligned_cols=127 Identities=11% Similarity=0.038 Sum_probs=89.5
Q ss_pred CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh----CCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514 17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVL----GIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK 87 (159)
Q Consensus 17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~----~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 87 (159)
+++|++++ |++++|+|||||||||||++|+|.. .+.+|+|.++| .++.... ...++.+++++|++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G-~~~~~~~---~~~r~~i~yv~Q~d-- 147 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG-ITPEEIK---KHYRGDVVYNAETD-- 147 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECC-EehHHHH---hhcCceeEEecccc--
Confidence 45788887 6899999999999999999999986 46799999988 3332111 11345699999984
Q ss_pred CCCCCCccCCCeEEEEEEEEcCCceEEEE-----CCEE--eCHHH-HHHHHHhcCccc--C------CCeeEEe-Ch---
Q psy17514 88 KNCPIGYENDNTIVICRQISIPSNTRYMI-----NGSS--VNPKR-VSDLFSSVNLNV--N------NPHFLIM-QG--- 147 (159)
Q Consensus 88 ~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-----~~~~--~~~~~-~~~~l~~~~l~~--~------~~~~l~~-q~--- 147 (159)
.+++.+||.|++.++.. ++. .+.. ...++ ++++++.++|.+ + .+..+|+ |+
T Consensus 148 -------~~~~~lTV~E~l~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv 218 (1394)
T TIGR00956 148 -------VHFPHLTVGETLDFAAR--CKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV 218 (1394)
T ss_pred -------ccCCCCCHHHHHHHHHH--hCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH
Confidence 46788999999987532 111 0111 11123 356789999975 1 1345777 43
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
.||++|+.+|+
T Consensus 219 sIA~aL~~~p~ 229 (1394)
T TIGR00956 219 SIAEASLGGAK 229 (1394)
T ss_pred HHHHHHHhCCC
Confidence 99999999985
No 368
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.59 E-value=1.8e-14 Score=102.48 Aligned_cols=124 Identities=27% Similarity=0.365 Sum_probs=80.5
Q ss_pred EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
+..|+++||++|.+.. .+++.++++|+|||||||||||++|+.++..... ..+...+.++++.+. ....|.++
T Consensus 1 i~~l~l~nfr~~~~~~--l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~----~~~~i~~~ 74 (198)
T cd03276 1 IESITLKNFMCHRHLQ--IEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGE----SSAKITVT 74 (198)
T ss_pred CeEEEEeCccceeeeE--EecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCC----CeEEEEEE
Confidence 3579999999997654 3577889999999999999999999988765532 122222345554322 35779999
Q ss_pred EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe-Ch---hHhHhh----
Q psy17514 82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM-QG---RVTKVL---- 153 (159)
Q Consensus 82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-q~---~ia~~l---- 153 (159)
|++.+ +++ | . . ......++.++++.-......+..+|+ |+ +||+++
T Consensus 75 ~~~~~---------~~~------~---~----~----~~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~ 128 (198)
T cd03276 75 LKNQG---------LDA------N---P----L----CVLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWE 128 (198)
T ss_pred EEcCC---------ccC------C---c----C----CHHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhc
Confidence 98852 222 1 0 0 111245777888773223356777777 43 888887
Q ss_pred cCCCC
Q psy17514 154 NMKPH 158 (159)
Q Consensus 154 ~~~p~ 158 (159)
+.+|+
T Consensus 129 ~~~p~ 133 (198)
T cd03276 129 VMESP 133 (198)
T ss_pred ccCCC
Confidence 46664
No 369
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=1.1e-14 Score=104.68 Aligned_cols=51 Identities=45% Similarity=0.839 Sum_probs=46.8
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
|.+..|+++||++|++..++++++.++++|+|||||||||++++|..+.+.
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~ 51 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGF 51 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 778899999999999999998999999999999999999999999866543
No 370
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.58 E-value=5.8e-17 Score=116.52 Aligned_cols=104 Identities=11% Similarity=0.014 Sum_probs=68.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchh-hhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVR-ANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVIC 103 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~-~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~ 103 (159)
+++++|+||||||||||+++|+|+.+|++|++. +.+ .. ..++ +.+ .+++.+|+.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~-~~------------~~~~---~~~---------~l~~~ltv~ 67 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRG-DA------------LPLG---ANS---------FILPGLTGE 67 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecC-ce------------eccc---ccc---------ccCCcCcHH
Confidence 789999999999999999999999999999986 443 10 0111 121 366778999
Q ss_pred EEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 104 RQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
+|+.+... .. +.. ..+....+.+.++|.. ..+..+|+ |+ ++|++++.+|+
T Consensus 68 enl~~~~~--~~--~~~-~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~ 124 (213)
T PRK15177 68 ENARMMAS--LY--GLD-GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCR 124 (213)
T ss_pred HHHHHHHH--Hc--CCC-HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCC
Confidence 99876432 11 111 1112223345556653 34556666 33 99999999985
No 371
>PLN03140 ABC transporter G family member; Provisional
Probab=99.57 E-value=4e-16 Score=136.80 Aligned_cols=128 Identities=10% Similarity=0.091 Sum_probs=90.1
Q ss_pred CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514 16 TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK 87 (159)
Q Consensus 16 ~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 87 (159)
.+++|++++ |++++|+|||||||||||++|+|.+.++ +|+|.++| .++... ..++.++|++|++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG-~~~~~~-----~~~~~i~yv~Q~d-- 248 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNG-YRLNEF-----VPRKTSAYISQND-- 248 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECC-Eechhh-----cccceeEEecccc--
Confidence 456788888 6899999999999999999999999887 89999988 332111 1246799999984
Q ss_pred CCCCCCccCCCeEEEEEEEEcCCceE-----EEE-CC--EEe--------C----------------HHHHHHHHHhcCc
Q psy17514 88 KNCPIGYENDNTIVICRQISIPSNTR-----YMI-NG--SSV--------N----------------PKRVSDLFSSVNL 135 (159)
Q Consensus 88 ~~~~~~~~~~~~~tv~~~i~~~~~~~-----~~~-~~--~~~--------~----------------~~~~~~~l~~~~l 135 (159)
.+++++||+|++.+...-. +.. .. ..+ . ...++++++.+||
T Consensus 249 -------~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL 321 (1470)
T PLN03140 249 -------VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321 (1470)
T ss_pred -------cCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCC
Confidence 4678899999998753200 000 00 000 0 0124668899999
Q ss_pred cc--------CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 136 NV--------NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 136 ~~--------~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
.. .....+|+ |+ .||++++.+|+
T Consensus 322 ~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~ 356 (1470)
T PLN03140 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356 (1470)
T ss_pred ccccCceeCCccccCCCcccceeeeehhhhcCCCc
Confidence 74 12346777 44 99999999885
No 372
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.56 E-value=1.5e-15 Score=133.96 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=76.9
Q ss_pred eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCC
Q psy17514 18 VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPI 92 (159)
Q Consensus 18 ~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 92 (159)
.+|.+++ |++++|+|||||||||||++|.|+++|+.|+|.++| .|+|++|++
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----------------~iayv~Q~~------- 496 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----------------RISFSPQTS------- 496 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----------------EEEEEeCCC-------
Confidence 4677777 789999999999999999999999999999998754 489999986
Q ss_pred CccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHH---------HhcCccc-----CCCeeEEe-Ch---hHhHhhc
Q psy17514 93 GYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLF---------SSVNLNV-----NNPHFLIM-QG---RVTKVLN 154 (159)
Q Consensus 93 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~l~~-----~~~~~l~~-q~---~ia~~l~ 154 (159)
.+++ .|+++||.++.. + +. .++.+++ +.+...+ .....||+ |+ ++|||+.
T Consensus 497 --~l~~-~Ti~eNI~~g~~--~--~~-----~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~ 564 (1490)
T TIGR01271 497 --WIMP-GTIKDNIIFGLS--Y--DE-----YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVY 564 (1490)
T ss_pred --ccCC-ccHHHHHHhccc--c--ch-----HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHH
Confidence 3455 499999998732 1 11 1222222 2222111 24567777 44 9999999
Q ss_pred CCCC
Q psy17514 155 MKPH 158 (159)
Q Consensus 155 ~~p~ 158 (159)
.+|+
T Consensus 565 ~~~~ 568 (1490)
T TIGR01271 565 KDAD 568 (1490)
T ss_pred cCCC
Confidence 9986
No 373
>PRK00064 recF recombination protein F; Reviewed
Probab=99.56 E-value=5.9e-14 Score=108.23 Aligned_cols=118 Identities=21% Similarity=0.335 Sum_probs=80.4
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|++..|+++||++|.+.. ..++.++++|+|||||||||||++|+.+.... +.+.....++++.+. ....|..
T Consensus 1 M~i~~l~i~nfr~~~~~~--l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~--s~r~~~~~~li~~g~----~~~~v~~ 72 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELD--LELSPGVNVLVGENGQGKTNLLEAIYLLAPGR--SHRTARDKELIRFGA----EAAVIHG 72 (361)
T ss_pred CEEEEEEEeCCCcccceE--EEecCCeEEEECCCCCCHHHHHHHHHHhCCCC--CccCCChhHHHhcCC----CcEEEEE
Confidence 889999999999998755 35778999999999999999999999987554 334444456666543 3456777
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEe-CHHHHHHHHHhcCccc
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSV-NPKRVSDLFSSVNLNV 137 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~ 137 (159)
.|...+ ...++...+...++..+++|++.. ....+.+++..+.+..
T Consensus 73 ~~~~~~-----------~~~~i~~~~~~~~~~~~~ing~~~~~~~~l~~~~~~v~~~p 119 (361)
T PRK00064 73 RVEKGG-----------RELPLGLEIDKKGGRKVRINGEPQRKLAELAGLLNVVLFTP 119 (361)
T ss_pred EEEeCC-----------cEEEEEEEEEcCCceEEEECCccccCHHHHhhhccEEEEcc
Confidence 775421 123455554433444688899876 3445555555444443
No 374
>PRK01156 chromosome segregation protein; Provisional
Probab=99.54 E-value=1.8e-13 Score=116.32 Aligned_cols=138 Identities=26% Similarity=0.380 Sum_probs=92.0
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|.+..|.+.||++|++.. .+|+.++++|+|+|||||||+|+||++++... .+.....++++.+. ..+.|.+
T Consensus 1 M~i~~l~l~NF~s~~~~~--i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~---~~~~~~~~~i~~~~----~~~~V~l 71 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSE--IEFDTGINIITGKNGAGKSSIVDAIRFALFTD---KRTEKIEDMIKKGK----NNLEVEL 71 (895)
T ss_pred CeEEEEEEeCccCCCCce--EecCCCeEEEECCCCCCHHHHHHHHHHHHcCC---cccccHHHHhhCCC----CeEEEEE
Confidence 889999999999998765 46888999999999999999999999877533 12222245554332 3577888
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCc-----eEEEECCEEeC--HHHHHHHH--HhcCcccC--CCeeEEeChhH
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSN-----TRYMINGSSVN--PKRVSDLF--SSVNLNVN--NPHFLIMQGRV 149 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~-----~~~~~~~~~~~--~~~~~~~l--~~~~l~~~--~~~~l~~q~~i 149 (159)
.|...+ ..++|.+.+..... ..+..+|.... ...+.+.+ ..++++.+ ...-+++||.+
T Consensus 72 ~f~~~g-----------~~y~i~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~ 140 (895)
T PRK01156 72 EFRIGG-----------HVYQIRRSIERRGKGSRREAYIKKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEM 140 (895)
T ss_pred EEEECC-----------EEEEEEEEEecCCCCCCceEEEecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccch
Confidence 887532 23567776643221 22444665433 23556655 46777652 23445669998
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
..++.++|.
T Consensus 141 ~~l~~~~~~ 149 (895)
T PRK01156 141 DSLISGDPA 149 (895)
T ss_pred HHHHhCCHH
Confidence 888877774
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.54 E-value=7.5e-15 Score=117.40 Aligned_cols=124 Identities=21% Similarity=0.276 Sum_probs=91.2
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.++++|+ +.|++ +.++.+++ ++-++|+||||+||||||+.|.|...|.+|.|.+.. ...
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~--------------~v~ 386 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE--------------TVK 386 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC--------------ceE
Confidence 4889999 99966 57888888 688999999999999999999999999999887642 357
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCe-eEEe-Ch---hH
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPH-FLIM-QG---RV 149 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~-~l~~-q~---~i 149 (159)
++|..|+.. .++++.|+.+++.-.. ....+..+...|..+++.. ..|. .||+ |+ .+
T Consensus 387 igyf~Q~~~--------~l~~~~t~~d~l~~~~--------~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~L 450 (530)
T COG0488 387 IGYFDQHRD--------ELDPDKTVLEELSEGF--------PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLL 450 (530)
T ss_pred EEEEEehhh--------hcCccCcHHHHHHhhC--------ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHH
Confidence 999999742 2234445555543321 1111678999999999976 3444 5555 44 78
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|+++...|.
T Consensus 451 a~ll~~~pN 459 (530)
T COG0488 451 AKLLLQPPN 459 (530)
T ss_pred HHHhccCCC
Confidence 888877764
No 376
>KOG0250|consensus
Probab=99.53 E-value=1.2e-13 Score=115.06 Aligned_cols=148 Identities=30% Similarity=0.456 Sum_probs=115.0
Q ss_pred EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
+.++.+.||.|+.+.. ..+...++.|+|+||||||-+|-||+..++.. +++-|...+++++..+. ..+.|.+.
T Consensus 42 I~sI~L~NFMCHsnL~--IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~----~~A~IsIt 115 (1074)
T KOG0250|consen 42 IESIHLTNFMCHSNLL--IEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGC----SSAKISIT 115 (1074)
T ss_pred EEEEEEeeecccccce--eccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCC----cceEEEEE
Confidence 5689999999998875 56777899999999999999999999988876 56778888899987554 57889999
Q ss_pred EEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE---CCEEeC--HHHHHHHHHhcCcccCCCeeEEeChhHhHhhc-C
Q psy17514 82 FDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI---NGSSVN--PKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLN-M 155 (159)
Q Consensus 82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~---~~~~~~--~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~-~ 155 (159)
..+.+...++.+ .+.+.++|.+.|...+..++.. +|+.++ .+++..+++.++|+..||..+++|.+-.++|. .
T Consensus 116 L~N~G~~Afk~e-iyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~ 194 (1074)
T KOG0250|consen 116 LSNSGLDAFKPE-IYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANS 194 (1074)
T ss_pred EecCCcccCChh-hcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcC
Confidence 988765544432 2456789999998866544433 344333 56789999999999999999999987666663 3
Q ss_pred CC
Q psy17514 156 KP 157 (159)
Q Consensus 156 ~p 157 (159)
+|
T Consensus 195 ~p 196 (1074)
T KOG0250|consen 195 NP 196 (1074)
T ss_pred Ch
Confidence 44
No 377
>KOG0061|consensus
Probab=99.53 E-value=1.7e-15 Score=123.44 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=94.6
Q ss_pred CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC---cccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514 16 TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGI---QVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK 87 (159)
Q Consensus 16 ~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 87 (159)
.+++|++++ +++.||+||+||||||||++|+|-... ..|+|.++| +.. .....++..+||.|+.
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG-~~~-----~~~~~~~~s~yV~QdD-- 113 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG-RPR-----DSRSFRKISGYVQQDD-- 113 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC-ccC-----chhhhhheeEEEcccc--
Confidence 367889888 689999999999999999999999864 489999988 221 1122567899999985
Q ss_pred CCCCCCccCCCeEEEEEEEEcCCceEEEECC---EEeCHHHHHHHHHhcCccc--CCC------eeEEe-Ch---hHhHh
Q psy17514 88 KNCPIGYENDNTIVICRQISIPSNTRYMING---SSVNPKRVSDLFSSVNLNV--NNP------HFLIM-QG---RVTKV 152 (159)
Q Consensus 88 ~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~~~------~~l~~-q~---~ia~~ 152 (159)
.+++.+||+|++.+... .+... +.+..++++++++.++|.. +.. ..+|+ ++ +||.=
T Consensus 114 -------~l~~~LTV~EtL~f~A~--lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E 184 (613)
T KOG0061|consen 114 -------VLLPTLTVRETLRFSAL--LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 (613)
T ss_pred -------cccccccHHHHHHHHHH--hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence 57899999999988654 44432 2445678999999999985 211 13555 43 88888
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
+..+|.
T Consensus 185 ll~~P~ 190 (613)
T KOG0061|consen 185 LLTDPS 190 (613)
T ss_pred HHcCCC
Confidence 888884
No 378
>KOG0059|consensus
Probab=99.50 E-value=8.2e-16 Score=129.95 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=104.0
Q ss_pred EEEEEeCe-eeecCCe-eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 4 KSMVLDGF-KSYGTRV-EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~-~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
..+.++|+ +.|+... ++++++ +|+.++.|+|||||||++++|+|...|++|++.+.| .++.. .......++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g-~~i~~-~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKG-HDITV-STDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEec-Ccccc-ccchhhhhh
Confidence 46889999 9998776 666666 799999999999999999999999999999999876 33321 111122467
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc--CCCe-eEEe-Ch---
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV--NNPH-FLIM-QG--- 147 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~--~~~~-~l~~-q~--- 147 (159)
.+||.+|.. .+.+.+|.+|++.+..+ +.| .....+.+..+++.++|.. +.+. .+|+ ++
T Consensus 641 ~iGyCPQ~d---------~l~~~lT~rEhL~~~ar----lrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkL 707 (885)
T KOG0059|consen 641 QLGYCPQFD---------ALWEELTGREHLEFYAR----LRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRL 707 (885)
T ss_pred hcccCCchh---------hhhhhccHHHHHHHHHH----HcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhH
Confidence 899999984 68889999999887533 223 2233456788899999987 3333 3444 33
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
.+|-+++.+|+
T Consensus 708 s~aialig~p~ 718 (885)
T KOG0059|consen 708 SFAIALIGDPS 718 (885)
T ss_pred HHHHHHhcCCC
Confidence 88888888875
No 379
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.50 E-value=1.1e-13 Score=117.69 Aligned_cols=144 Identities=29% Similarity=0.375 Sum_probs=90.2
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|++.+|+++||.+|.+..+-.-+..++++|+|||||||||||+||++.+.++.-........++++.+. ....|.+
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~~~~~~~~i~~g~----~~~~V~l 76 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDDLIRAGE----KSASVEL 76 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCccchhhhHHHhcCC----ccEEEEE
Confidence 888999999999998655333355799999999999999999999999876622111112245555333 2367888
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCc------eEEEECCEEe--CHHHHHHH-HHhcCcccC--CCeeEEeChhH
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSN------TRYMINGSSV--NPKRVSDL-FSSVNLNVN--NPHFLIMQGRV 149 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~------~~~~~~~~~~--~~~~~~~~-l~~~~l~~~--~~~~l~~q~~i 149 (159)
.|+..+. .+.|.+.+.-... .....++... ....+.+. -..+|++.+ ...-+++||.+
T Consensus 77 ~F~~~g~-----------~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~ 145 (908)
T COG0419 77 EFEVNGK-----------KYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEF 145 (908)
T ss_pred EEEECCE-----------EEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhH
Confidence 8885431 2455555333221 0011122211 11234443 456788752 23455679999
Q ss_pred hHhhcCCCCC
Q psy17514 150 TKVLNMKPHE 159 (159)
Q Consensus 150 a~~l~~~p~~ 159 (159)
+.+|...|+|
T Consensus 146 ~~fl~~~~~e 155 (908)
T COG0419 146 DAFLKSKPKE 155 (908)
T ss_pred HHHHhcCcHH
Confidence 9999999874
No 380
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=9e-16 Score=104.76 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=92.5
Q ss_pred EEEEEeCe-eeec-----C--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC
Q psy17514 4 KSMVLDGF-KSYG-----T--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ 70 (159)
Q Consensus 4 ~~l~l~~~-~~~~-----~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~ 70 (159)
..|.++|+ |+|- + .+++.+++ ||++++-||+|+||||||++|++-+.|++|.|.+....+.+..-..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 35888999 8872 1 24666666 7999999999999999999999999999999877643222211111
Q ss_pred C-----ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCe
Q psy17514 71 A-----GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPH 141 (159)
Q Consensus 71 ~-----~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~ 141 (159)
. ..++..|+||.|.- ...|..+..+-+.-+.. .+.........++.++|..+++.. -.|.
T Consensus 83 ~pr~vl~vRr~TiGyVSQFL---------RviPRV~aLdVvaePll--~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa 151 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFL---------RVIPRVSALDVVAEPLL--ARGVPREVARAKAADLLTRLNLPERLWSLAPA 151 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHH---------HhccCcchHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc
Confidence 1 12456789988862 23333333332222211 111122334567889999999975 4788
Q ss_pred eEEe--Ch--hHhHhhcCC
Q psy17514 142 FLIM--QG--RVTKVLNMK 156 (159)
Q Consensus 142 ~l~~--q~--~ia~~l~~~ 156 (159)
.+|+ |+ -|||.++.+
T Consensus 152 TFSGGEqQRVNIaRgfivd 170 (235)
T COG4778 152 TFSGGEQQRVNIARGFIVD 170 (235)
T ss_pred ccCCchheehhhhhhhhcc
Confidence 9998 33 889887654
No 381
>PTZ00243 ABC transporter; Provisional
Probab=99.49 E-value=1e-14 Score=128.99 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=79.4
Q ss_pred cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCC
Q psy17514 15 GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKN 89 (159)
Q Consensus 15 ~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 89 (159)
+++.+|++++ |++++|+|||||||||||++|.|.+.|++|++.+ +..|+|++|++
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~----------------~~~i~yv~Q~~---- 730 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA----------------ERSIAYVPQQA---- 730 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE----------------CCeEEEEeCCC----
Confidence 4456788877 7899999999999999999999999999998863 13699999986
Q ss_pred CCCCccCCCeEEEEEEEEcCCceEEEECCEEeC----HHHHHHHHHhc--Cccc---CCCeeEEe-Ch---hHhHhhcCC
Q psy17514 90 CPIGYENDNTIVICRQISIPSNTRYMINGSSVN----PKRVSDLFSSV--NLNV---NNPHFLIM-QG---RVTKVLNMK 156 (159)
Q Consensus 90 ~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~l~~---~~~~~l~~-q~---~ia~~l~~~ 156 (159)
.++ +.|+.+|+.++.. +. ..... ...+.+.++.+ |+.. .....||+ |+ ++||++..+
T Consensus 731 -----~l~-~~Tv~enI~~~~~--~~--~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~ 800 (1560)
T PTZ00243 731 -----WIM-NATVRGNILFFDE--ED--AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYAN 800 (1560)
T ss_pred -----ccC-CCcHHHHHHcCCh--hh--HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 233 3599999987532 10 00000 01122233333 4432 45677887 44 999999999
Q ss_pred CC
Q psy17514 157 PH 158 (159)
Q Consensus 157 p~ 158 (159)
|+
T Consensus 801 p~ 802 (1560)
T PTZ00243 801 RD 802 (1560)
T ss_pred CC
Confidence 86
No 382
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1.2e-12 Score=97.65 Aligned_cols=114 Identities=33% Similarity=0.518 Sum_probs=78.8
Q ss_pred EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEE
Q psy17514 4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFD 83 (159)
Q Consensus 4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q 83 (159)
..|+++||++|.+.. .+++..+++|+|||||||||+|++|+.++.... ..++++.+. ....|...|.
T Consensus 2 ~~l~i~nf~~~~~~~--i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~-------~~~~~~~~~----~~~~v~~~~~ 68 (276)
T cd03241 2 LELSIKNFALIEELE--LDFEEGLTVLTGETGAGKSILLDALSLLLGGRA-------SADLIRSGA----EKAVVEGVFD 68 (276)
T ss_pred cEEEEeCccceeeeE--EEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCC-------hHHHhhCCC----CeEEEEEEEe
Confidence 578999999997654 357889999999999999999999999886541 134444222 3455777776
Q ss_pred cCCCCCC-CC----CccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHH
Q psy17514 84 NSDKKNC-PI----GYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLF 130 (159)
Q Consensus 84 ~~~~~~~-~~----~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l 130 (159)
....... .+ .....+++++.+.+...+++.|++|++....+.+.++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~Ing~~vsl~~l~~i~ 120 (276)
T cd03241 69 ISDEEEAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELG 120 (276)
T ss_pred cCCchHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEECCEEECHHHHHHHH
Confidence 5432100 00 00112467888888766677899999988777776663
No 383
>PRK02224 chromosome segregation protein; Provisional
Probab=99.49 E-value=5.4e-13 Score=113.33 Aligned_cols=139 Identities=22% Similarity=0.373 Sum_probs=86.5
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|.+..|.+.||++|.+.. .+++.++++|+|||||||||||++|++.+..... +.....++++.+. ....|.+
T Consensus 1 M~i~~l~l~nf~~~~~~~--~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~--~~~~~~~~~~~~~----~~~~v~~ 72 (880)
T PRK02224 1 MRFDRVRLENFKCYADAD--LRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKA--LDDTLDDVITIGA----EEAEIEL 72 (880)
T ss_pred CeEEEEEEECcccccceE--EecCCCeEEEECCCCCCHHHHHHHHHHHhCCCcc--ccccHHHHHhCCC----CcEEEEE
Confidence 889999999999998765 3577899999999999999999999988765421 1112245554332 3567888
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCc----eEEE-ECCE--EeCHHHHHH-HHHhcCcccC--CCeeEEeChhHh
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSN----TRYM-INGS--SVNPKRVSD-LFSSVNLNVN--NPHFLIMQGRVT 150 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~----~~~~-~~~~--~~~~~~~~~-~l~~~~l~~~--~~~~l~~q~~ia 150 (159)
.|...+ ..++|.+.+...+. ..+. .++. ......+.. +.+.+|++.. ....+++||.+.
T Consensus 73 ~f~~~~-----------~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~ 141 (880)
T PRK02224 73 WFEHAG-----------GEYHIERRVRLSGDRATTAKCVLETPEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVN 141 (880)
T ss_pred EEEECC-----------EEEEEEEEEecCCCCcccceeEEeCCCccccChHHHHHHHHHHHCCCHHHhcceeEeeccChH
Confidence 887532 12355555432111 1111 1111 111223333 3445787652 223456799999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
.++...|.
T Consensus 142 ~~l~~~p~ 149 (880)
T PRK02224 142 KLINATPS 149 (880)
T ss_pred HHHcCCHH
Confidence 99988775
No 384
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=5.8e-13 Score=99.01 Aligned_cols=100 Identities=22% Similarity=0.370 Sum_probs=69.9
Q ss_pred EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEE
Q psy17514 4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFD 83 (159)
Q Consensus 4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q 83 (159)
..|+++||++|.+.. .+++.++++|+|||||||||++++|..++...+. +.....++++.+. ....|...|.
T Consensus 2 ~~l~i~nfr~~~~~~--~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~~--r~~~~~~~i~~~~----~~~~v~~~f~ 73 (270)
T cd03242 2 KSLELRNFRNYAELE--LEFEPGVTVLVGENAQGKTNLLEAISLLATGKSH--RTSRDKELIRWGA----EEAKISAVLE 73 (270)
T ss_pred cEEEEeCCcCcceeE--EecCCCeEEEECCCCCCHHHHHHHHHHhccCCCC--CCCCHHHHHhcCC----CCEEEEEEEE
Confidence 578999999998654 3577899999999999999999999988875532 2323356665443 3566888886
Q ss_pred cCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeC
Q psy17514 84 NSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVN 122 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~ 122 (159)
..+ ...++...+....++.+++|+....
T Consensus 74 ~~~-----------~~~~i~~~~~~~~~~~~~ing~~~~ 101 (270)
T cd03242 74 RQG-----------GELALELTIRSGGGRKARLNGIKVR 101 (270)
T ss_pred eCC-----------CeEEEEEEEEcCCceEEEECCeecc
Confidence 532 1245666654444556888887764
No 385
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.48 E-value=3.9e-13 Score=102.25 Aligned_cols=121 Identities=26% Similarity=0.402 Sum_probs=86.8
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|.+..|.+.||++|.... .++++++++++|+||+|||+||+||+.+.... +.|.....++++.+. ....|..
T Consensus 1 M~l~~L~L~nFRNy~~~~--l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~gr--S~Rt~~~~~lir~~~----~~~~i~~ 72 (363)
T COG1195 1 MYLLSLLLRNFRNYAELD--LDLSPGVNVLVGENGQGKTNLLEAIYLLALGR--SHRTSRDKELIRTGA----DEAEISA 72 (363)
T ss_pred CceeeeehhhcCCcccce--eccCCCcEEEECCCCCchHHHHHHHHHHcccc--CccccchhHHHhcCC----ccEEEEE
Confidence 788899999999998877 57889999999999999999999999887655 455555467777655 3566777
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCee
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHF 142 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (159)
..|... ...++...+.-.++...++|+.+. ....+++..+.+.-..|..
T Consensus 73 ~v~~~~-----------~~~~~~~~~~~~g~~~vring~~~--~~~~el~g~l~~vlf~Ped 121 (363)
T COG1195 73 RVQRKG-----------REGTLGLQISKKGRRRVRINGTKA--RKLAELAGHLNVVLFTPED 121 (363)
T ss_pred EEeecc-----------ceeeeEEEeccCcceEEEECCccc--ccHHHHhhhCceEEecccc
Confidence 777631 123555665555555678888765 4566777666665444443
No 386
>PRK14079 recF recombination protein F; Provisional
Probab=99.46 E-value=1.3e-12 Score=100.39 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=76.4
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|.+..|+++||++|.+.. .+++.++++|+||||+||||||++|+.++.. +.+.....++++.+. ....|..
T Consensus 1 M~i~~l~l~nfRn~~~~~--l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~g---s~r~~~~~~lI~~g~----~~~~v~~ 71 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPT--LAFPPGVTAVVGENAAGKTNLLEAIYLALTG---ELPNGRLADLVRFGE----GEAWVHA 71 (349)
T ss_pred CEEEEEEEeccCCcccce--EEeCCCeEEEECCCCCCHHHHHHHHHHHhcC---CCCCCcHHhheecCC----CcEEEEE
Confidence 889999999999998776 3678899999999999999999999887653 455444456665443 2345666
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL 135 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 135 (159)
.++..+. ..++...+.- ....+++|++......+.+++..+-+
T Consensus 72 ~~~~~~~-----------~~~~~~~~~~-~~~~~~ing~~~~~~~l~~~~~~v~~ 114 (349)
T PRK14079 72 EVETGGG-----------LSRLEVGLGP-GRRELKLDGVRVSLRELARLPGAVLI 114 (349)
T ss_pred EEEeCCC-----------eEEEEEEEEc-CceEEEECCeecCHHHHHhhhcEEEE
Confidence 6654311 1122222222 23458889987765566665544444
No 387
>KOG0054|consensus
Probab=99.46 E-value=3.5e-14 Score=122.33 Aligned_cols=132 Identities=9% Similarity=0.117 Sum_probs=96.0
Q ss_pred EEEEeCe-eeecCC--eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGTR--VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~--~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ .+|... .||++++ +|-++|+|+.|||||||+.+|-.+..|.+|+|.++| .|+-.-+ -+ ..|.
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDg-vdI~~ig-L~-dLRs 1214 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDG-VDISKIG-LH-DLRS 1214 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcC-eeccccc-HH-HHHh
Confidence 5899999 999754 7889988 688999999999999999999999999999999998 3432211 11 1478
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
++++++|+| .+|.. |++.|+..... ..++++=++|+..+|.. +.-.+
T Consensus 1215 rlsIIPQdP---------vLFsG-TvR~NLDPf~e---------~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1215 RLSIIPQDP---------VLFSG-TVRFNLDPFDE---------YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred cCeeeCCCC---------ceecC-ccccccCcccc---------cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 899999997 35554 89999875422 13355556666655532 22233
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|- |+ ++||||..+++
T Consensus 1276 ~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred CChHHHHHHHHHHHHhccCC
Confidence 333 55 99999988765
No 388
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=2.4e-14 Score=98.19 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=55.7
Q ss_pred EeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 8 LDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 8 l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
++++ +.|.+..++.+++ +++++|+|+||||||||+++|+|++.++.|++++++. ++... ........++++
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~-~~~~~--~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK-DIAKL--PLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE-EcccC--CHHHHHhceEEE
Confidence 5677 7787666777776 6899999999999999999999999999999998872 21100 001124568898
Q ss_pred EEcC
Q psy17514 82 FDNS 85 (159)
Q Consensus 82 ~q~~ 85 (159)
+|-+
T Consensus 79 ~qlS 82 (157)
T cd00267 79 PQLS 82 (157)
T ss_pred eeCC
Confidence 8843
No 389
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.45 E-value=1.2e-12 Score=94.18 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=55.5
Q ss_pred EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccc-hhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQ-VRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~-i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
+..|+++||++|++.. + +++..+++|+|+||+||||||++|+.++..+... .+.....++++.+. ....|.+.
T Consensus 3 i~~i~i~nfr~~~~~~-i-~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~----~~~~v~~~ 76 (213)
T cd03277 3 IVRIKLENFVTYDETE-F-RPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGC----DEGTIEIE 76 (213)
T ss_pred eEEEEEeCCCCcceeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCC----CcEEEEEE
Confidence 6789999999996543 3 5778999999999999999999999998654321 23333345555433 34668877
Q ss_pred EEcC
Q psy17514 82 FDNS 85 (159)
Q Consensus 82 ~q~~ 85 (159)
|...
T Consensus 77 ~~~~ 80 (213)
T cd03277 77 LYGN 80 (213)
T ss_pred EEeC
Confidence 7664
No 390
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.3e-14 Score=109.62 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=93.9
Q ss_pred EEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
+.+.++ ..|. .+++|.+++ ++.++++||+|+||||+++.|..++++.+|.|.+++ +++..-.. ...++.|
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~-qdir~vtq--~slR~aI 339 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDG-QDIRDVTQ--QSLRRAI 339 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcc-hhHHHhHH--HHHHHHh
Confidence 566677 7775 466778887 578999999999999999999999999999999998 55532121 2357789
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEE
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLI 144 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~ 144 (159)
++|+|+. .+|.+ |+.-|+.++. .....+++....+.+.+.+ ..-..+|
T Consensus 340 g~VPQDt---------vLFND-ti~yni~ygr--------~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklS 401 (497)
T COG5265 340 GIVPQDT---------VLFND-TIAYNIKYGR--------PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401 (497)
T ss_pred CcCcccc---------eehhh-hHHHHHhccC--------ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeecc
Confidence 9999984 44443 6777777653 2334455555555554432 2234455
Q ss_pred e---Ch-hHhHhhcCCCC
Q psy17514 145 M---QG-RVTKVLNMKPH 158 (159)
Q Consensus 145 ~---q~-~ia~~l~~~p~ 158 (159)
+ |+ +|||++..+|+
T Consensus 402 ggekqrvaiar~ilk~p~ 419 (497)
T COG5265 402 GGEKQRVAIARTILKNPP 419 (497)
T ss_pred CchHHHHHHHHHHhcCCC
Confidence 5 44 99999999996
No 391
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=2.4e-13 Score=117.06 Aligned_cols=142 Identities=24% Similarity=0.343 Sum_probs=82.9
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCC--CeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhhHHHHHHhhCCCceeE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDR--EFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~--~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
|++..|+++||++|.+...+ +|+. ++++|+|||||||||||++|++.+.... +...... .++.. .....
T Consensus 1 M~~~~L~l~nf~s~~~~~~i-dF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~-~~~~~----~~~~~ 74 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTI-DFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSL-NSLYA----APSEA 74 (1042)
T ss_pred CeeeEEEEeCeeccCCCcee-eecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCcccccc-chhhc----CCCCC
Confidence 88999999999999876544 5765 8999999999999999999999985431 1111000 11111 11123
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCC-----ceE---E---EE-CCE--EeCHHHHHH-HHHhcCcccC--
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPS-----NTR---Y---MI-NGS--SVNPKRVSD-LFSSVNLNVN-- 138 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~-----~~~---~---~~-~~~--~~~~~~~~~-~l~~~~l~~~-- 138 (159)
..|.+.|...+. .+.|.+.+.... ... + .. .+. ....+.+.+ +.+.+||+.+
T Consensus 75 ~~v~l~F~~~g~-----------~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F 143 (1042)
T TIGR00618 75 AFAELEFSLGTK-----------IYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTF 143 (1042)
T ss_pred eEEEEEEEECCE-----------EEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHH
Confidence 456677754321 123333222100 000 0 00 011 011234555 4457898763
Q ss_pred CCeeEEeChhHhHhhcCCCCC
Q psy17514 139 NPHFLIMQGRVTKVLNMKPHE 159 (159)
Q Consensus 139 ~~~~l~~q~~ia~~l~~~p~~ 159 (159)
....+++||.++.++.++|+|
T Consensus 144 ~~~~~l~Qg~~~~fl~a~~~e 164 (1042)
T TIGR00618 144 TRVVLLPQGEFAQFLKAKSKE 164 (1042)
T ss_pred hhheeecccchHHHHhCCHHH
Confidence 344567799999999888864
No 392
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.43 E-value=9.7e-16 Score=111.38 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=74.7
Q ss_pred eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCC
Q psy17514 19 EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIG 93 (159)
Q Consensus 19 ~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 93 (159)
++.++| |++++++|||||||||+|++|+|++.|++|.+++.|..+..+.. ..-+.+++|+-.-
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~----~~~~~~~~v~gqk-------- 106 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRRE----EYLRSIGLVMGQK-------- 106 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHH----HHHHHHHHHhhhh--------
Confidence 445666 68999999999999999999999999999999999854432111 1123455554221
Q ss_pred ccCCCeEEEEEEEEcCCc-----eEEEECCEEeCHHHHHHHHHhcCccc--CCCe-eEEe-Ch---hHhHhhcCCCC
Q psy17514 94 YENDNTIVICRQISIPSN-----TRYMINGSSVNPKRVSDLFSSVNLNV--NNPH-FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 94 ~~~~~~~tv~~~i~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~-~l~~-q~---~ia~~l~~~p~ 158 (159)
...++-+..... --|.+.+.. =.++...+.+.++|.. ..|. .+|. |+ ++|.+|..+|+
T Consensus 107 ------~ql~Wdlp~~ds~~v~~~Iy~Ipd~~-F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~ 176 (325)
T COG4586 107 ------LQLWWDLPALDSLEVLKLIYEIPDDE-FAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPK 176 (325)
T ss_pred ------heeeeechhhhhHHHHHHHHhCCHHH-HHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCc
Confidence 112111111000 012221111 1356777788888884 4443 4444 65 99999999886
No 393
>PRK03918 chromosome segregation protein; Provisional
Probab=99.41 E-value=4e-12 Score=108.06 Aligned_cols=139 Identities=23% Similarity=0.343 Sum_probs=83.3
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|.+..|.+.||++|.+.. .+++.++++|+|||||||||++++|++++....+ ..+.....++++.+. ..+.|.
T Consensus 1 m~i~~l~i~nf~~~~~~~--i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~v~ 74 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSV--VEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGG----SGTEIE 74 (880)
T ss_pred CeeEEEEEeCccCccCce--EecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCC----CCEEEE
Confidence 889999999999998754 3577899999999999999999999988764322 122111134443222 356778
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCE---EeCHHHHHHHHHh-cCcccCCCeeEEeChhHhHhhc
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGS---SVNPKRVSDLFSS-VNLNVNNPHFLIMQGRVTKVLN 154 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~---~~~~~~~~~~l~~-~~l~~~~~~~l~~q~~ia~~l~ 154 (159)
+.|...+ ..++|.+.+..+.. .+.. ++. ....+.+.+.+.. ++........+++||.+..++.
T Consensus 75 ~~f~~~~-----------~~~~i~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~ 142 (880)
T PRK03918 75 LKFEKNG-----------RKYRIVRSFNRGES-YLKYLDGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE 142 (880)
T ss_pred EEEEECC-----------eEEEEEEEEcCCce-EEEECCCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc
Confidence 8886532 13466665543322 2222 221 1223445555544 2222122334567999988864
Q ss_pred CCCC
Q psy17514 155 MKPH 158 (159)
Q Consensus 155 ~~p~ 158 (159)
.|.
T Consensus 143 -~~~ 145 (880)
T PRK03918 143 -SDE 145 (880)
T ss_pred -CcH
Confidence 564
No 394
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.41 E-value=3.4e-13 Score=94.10 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=29.9
Q ss_pred eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 18 VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 18 ~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
.+++++| +++++|+|||||||||||++|. +++|++++.+
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~ 52 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLIS 52 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECC
Confidence 3455555 7899999999999999999984 2567666543
No 395
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.41 E-value=6e-12 Score=102.23 Aligned_cols=118 Identities=22% Similarity=0.376 Sum_probs=84.8
Q ss_pred eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
|+..|.++||+.|.... .+++.++++|+||||||||+||++|..+++... ..++++.+. ....|..+
T Consensus 1 Ml~~l~i~nf~~~~~~~--i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~-------~~~~i~~~~----~~~~v~~~ 67 (563)
T TIGR00634 1 MLTELRINNFALIRVLT--VEFERGLTVLTGETGAGKSMIIDALSLLGGQRA-------GASRVRSGE----NRAVVEGR 67 (563)
T ss_pred CceEEEEcceeeeeeeE--EecCCCeEEEECCCCCCHHHHHHHHHHHhCcCc-------hHHHhcCCC----CeEEEEEE
Confidence 47789999999997765 458889999999999999999999999876441 124444332 45678888
Q ss_pred EEcCCCCC------CCCCccC---CCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHh
Q psy17514 82 FDNSDKKN------CPIGYEN---DNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSS 132 (159)
Q Consensus 82 ~q~~~~~~------~~~~~~~---~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (159)
|..+.... ...+... .+.+.+.+.+...+++.+++|+..+....+.++...
T Consensus 68 f~~~~~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~~~ 127 (563)
T TIGR00634 68 FTTESLDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSLLEFTSE 127 (563)
T ss_pred EccCCCchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEECCEEccHHHHHHHhcC
Confidence 87543210 0011111 235678888887778889999999988888888753
No 396
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.39 E-value=1.1e-12 Score=75.41 Aligned_cols=49 Identities=37% Similarity=0.515 Sum_probs=40.3
Q ss_pred EEEEEEeCeeeecCCeeeecCC--CCeEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFD--REFNAITGLNGTGKSNILDGICFVLGIQV 53 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~--~~~~~liG~NGaGKSTLl~~i~~~~~~~~ 53 (159)
+++|++.|+..|.... .+++ +.++.|+|||||||||||+||..++-+..
T Consensus 1 L~rl~L~Nw~~f~~~~--~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGET--IDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCeE--EeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3578999998887744 3455 46999999999999999999999988764
No 397
>KOG0054|consensus
Probab=99.39 E-value=4e-13 Score=115.99 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=93.4
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.++++|. .+|+. .+.|++++ |++++|+|+-|||||+||.+|.|-+...+|++.+.|
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g--------------- 582 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG--------------- 582 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---------------
Confidence 5778888 78864 33678887 789999999999999999999999999999887765
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
.++|++|.| ...+-||+|||.|+. +-.++++++.++...|.. ++-.
T Consensus 583 -siaYv~Q~p----------WI~ngTvreNILFG~---------~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 583 -SVAYVPQQP----------WIQNGTVRENILFGS---------PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred -eEEEecccc----------HhhCCcHHHhhhcCc---------cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 389999985 334459999999974 335577777777766643 3556
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
+||| |+ ++|||+..+.+
T Consensus 643 nLSGGQKqRIsLARAVY~~ad 663 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDAD 663 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCC
Confidence 7888 55 99999987764
No 398
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.39 E-value=1.9e-12 Score=90.60 Aligned_cols=80 Identities=46% Similarity=0.691 Sum_probs=53.5
Q ss_pred EEEEEeCeeeecCCeeeecCCCC-eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEE
Q psy17514 4 KSMVLDGFKSYGTRVEINDFDRE-FNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTF 82 (159)
Q Consensus 4 ~~l~l~~~~~~~~~~~l~~~~~~-~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~ 82 (159)
..++++||++|.+..+. ..+. +++|+||||+||||+|++|+.++...+-..+......+.+..-......+.|.++|
T Consensus 2 ~~i~l~nf~~~~~~~~~--~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f 79 (178)
T cd03239 2 KQITLKNFKSYRDETVV--GGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITF 79 (178)
T ss_pred cEEEEECccCCCCCEEe--cCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEE
Confidence 57899999999887643 2334 99999999999999999999988765333222221111111112233567888888
Q ss_pred EcC
Q psy17514 83 DNS 85 (159)
Q Consensus 83 q~~ 85 (159)
.+.
T Consensus 80 ~~~ 82 (178)
T cd03239 80 DKS 82 (178)
T ss_pred ECc
Confidence 774
No 399
>PRK10869 recombination and repair protein; Provisional
Probab=99.38 E-value=1e-11 Score=100.49 Aligned_cols=119 Identities=24% Similarity=0.340 Sum_probs=84.2
Q ss_pred eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
|+..|.++||+.|.... .+++.++++|+||||||||+|+++|+.+++... . .++++.+. ..+.|..+
T Consensus 1 ML~~L~I~nf~~i~~~~--i~f~~glnvitGetGaGKS~ildAi~~llG~r~-----~--~~~ir~g~----~~a~Ve~~ 67 (553)
T PRK10869 1 MLAQLTISNFAIVRELE--IDFQSGMTVITGETGAGKSIAIDALGLCLGGRA-----E--ASMVRPGA----TRADLCAR 67 (553)
T ss_pred CccEEEEcccccceeeE--EecCCCcEEEECCCCCChHHHHHHHHHHhCCCc-----c--cccccCCC----CcEEEEEE
Confidence 47789999998887655 468899999999999999999999999985331 1 13333222 46778888
Q ss_pred EEcCCCCC-----CCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhc
Q psy17514 82 FDNSDKKN-----CPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSV 133 (159)
Q Consensus 82 ~q~~~~~~-----~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (159)
|..++... ...+......+.+.+.+...+++.+++|+.......+.++.+.+
T Consensus 68 F~~~~~~~~~~~l~~~~~~~~~~~~i~R~i~~~g~s~~~INg~~v~~~~l~~l~~~l 124 (553)
T PRK10869 68 FSLKDTPAALRWLEDNQLEDGNECLLRRVISSDGRSRGFINGTPVPLSQLRELGQLL 124 (553)
T ss_pred EecCCChHHHHHHHhcCCCCCCeEEEEEEEecCCcceEEECCeeccHHHHHHHHHhh
Confidence 87533210 00111112356788888777778899999999888888887655
No 400
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=8.9e-12 Score=96.21 Aligned_cols=76 Identities=24% Similarity=0.369 Sum_probs=58.6
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|.+..|+++||++|.+.. .+++.++++|+|||||||||||++|+.+....+ .+.....++++.+. ....|..
T Consensus 1 M~l~~L~i~nFR~~~~~~--l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s--~R~~~~~~li~~g~----~~~~v~~ 72 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVD--LELSPGVNVIVGPNGQGKTNLLEAIYYLALGRS--HRTSRDKPLIRFGA----EAFVIEG 72 (365)
T ss_pred CEEEEEEEeCCcceeeeE--EEECCCeEEEECCCCCCHHHHHHHHHHHcccCC--ccccchhhHHhCCC----CeEEEEE
Confidence 889999999999997755 347788999999999999999999998876543 44444456666543 3566777
Q ss_pred EEEc
Q psy17514 81 TFDN 84 (159)
Q Consensus 81 v~q~ 84 (159)
.|..
T Consensus 73 ~~~~ 76 (365)
T TIGR00611 73 RVSK 76 (365)
T ss_pred EEEe
Confidence 7765
No 401
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.37 E-value=3.7e-13 Score=108.04 Aligned_cols=124 Identities=14% Similarity=0.212 Sum_probs=91.0
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ ..-++ ...+++.+ |+.+.|.||||||||||+++|+|+-+..+|.|..- ....
T Consensus 392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--------------~~~~ 457 (604)
T COG4178 392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--------------ADSA 457 (604)
T ss_pred eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--------------CCCc
Confidence 5788888 55544 44555555 78999999999999999999999988777776431 1235
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-----C--C--CeeEEe--C
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-----N--N--PHFLIM--Q 146 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~--~--~~~l~~--q 146 (159)
+-|++|.| .+|.-|.+|.+.++... .....+++.+.|..++|.+ + . ..-||+ |
T Consensus 458 ~lflpQ~P----------Y~p~GtLre~l~YP~~~------~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEq 521 (604)
T COG4178 458 LLFLPQRP----------YLPQGTLREALCYPNAA------PDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQ 521 (604)
T ss_pred eEEecCCC----------CCCCccHHHHHhCCCCC------CCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHH
Confidence 78899986 45555888888887541 1245688999999999975 1 1 123444 2
Q ss_pred -h-hHhHhhcCCCC
Q psy17514 147 -G-RVTKVLNMKPH 158 (159)
Q Consensus 147 -~-~ia~~l~~~p~ 158 (159)
+ ++||++..+|+
T Consensus 522 QRlafARilL~kP~ 535 (604)
T COG4178 522 QRLAFARLLLHKPK 535 (604)
T ss_pred HHHHHHHHHHcCCC
Confidence 3 99999999996
No 402
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.37 E-value=1.5e-11 Score=99.93 Aligned_cols=141 Identities=21% Similarity=0.243 Sum_probs=83.4
Q ss_pred CeEEEEEEeCeeeecCCeeeecCC-CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFD-REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|++..|+++||++|++..+-.+++ .++++|+||||+||||||++|++++.... .+......+++... .....|.
T Consensus 2 ~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~--~~~~~~~~~~~~~~---~~~~~v~ 76 (562)
T PHA02562 2 LKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKP--FRDIKKGQLINSIN---KKDLLVE 76 (562)
T ss_pred ceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCC--cCcCCHHHhhccCC---CCcEEEE
Confidence 467899999999998754223566 58999999999999999999999985432 11111123322111 1245677
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEe----CHHHHHHHHH-hcCcccCC--CeeEEeChhHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSV----NPKRVSDLFS-SVNLNVNN--PHFLIMQGRVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~----~~~~~~~~l~-~~~l~~~~--~~~l~~q~~ia~~ 152 (159)
+.|...+ ..+++.+.+..+ ...+..++... ..+.+.+.++ .+|+.... ..-+.+|+.+..+
T Consensus 77 l~f~~~~-----------~~y~i~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f 144 (562)
T PHA02562 77 LWFEYGE-----------KEYYIKRGIKPN-VFEIYCNGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPF 144 (562)
T ss_pred EEEEECC-----------EEEEEEEeccCC-eEEEecCCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhH
Confidence 7786532 234565554322 22233455432 2345555554 46665422 1234568877777
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
+...|.
T Consensus 145 ~~~~~~ 150 (562)
T PHA02562 145 MQLSAP 150 (562)
T ss_pred hcCChH
Confidence 766664
No 403
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.36 E-value=9.9e-12 Score=107.06 Aligned_cols=143 Identities=24% Similarity=0.334 Sum_probs=82.7
Q ss_pred CeEEEEEEeCeeeecCCeeeecCC------CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhh-hhHHHHHHhhCCCc
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFD------REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRA-NTLQELIYKNGQAG 72 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~------~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~-~~~~~~~~~~~~~~ 72 (159)
|++..|+++||.+|.+...+ +|+ .++++|+|||||||||||++|++.+... .+.-+. ....++++.+.
T Consensus 1 Mk~~~l~~~nf~s~~~~~~i-df~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~--- 76 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKI-DFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDT--- 76 (1047)
T ss_pred CcceEEEeecceeEcCCceE-EEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCC---
Confidence 88899999999888654332 342 6899999999999999999999988643 211010 11134333222
Q ss_pred eeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEc----CC-c-----e-EEEEC-CEE--eCHHHHH-HHHHhcCccc
Q psy17514 73 VTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISI----PS-N-----T-RYMIN-GSS--VNPKRVS-DLFSSVNLNV 137 (159)
Q Consensus 73 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~----~~-~-----~-~~~~~-~~~--~~~~~~~-~~l~~~~l~~ 137 (159)
....|.+.|...+.. +.|.+.... +. . . .+... +.. .....+. .+-+.+||+.
T Consensus 77 -~~~~v~~~F~~~~~~-----------y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~ 144 (1047)
T PRK10246 77 -AECLAEVEFEVKGEA-----------YRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDY 144 (1047)
T ss_pred -cceEEEEEEEECCeE-----------EEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCH
Confidence 345677777543211 222221100 00 0 0 01111 110 1112333 3456789987
Q ss_pred C--CCeeEEeChhHhHhhcCCCCC
Q psy17514 138 N--NPHFLIMQGRVTKVLNMKPHE 159 (159)
Q Consensus 138 ~--~~~~l~~q~~ia~~l~~~p~~ 159 (159)
+ ...-+++||.++.+|.++|+|
T Consensus 145 ~~F~~~v~l~QG~f~~fl~a~~~e 168 (1047)
T PRK10246 145 GRFTRSMLLSQGQFAAFLNAKPKE 168 (1047)
T ss_pred HHhhhheeeccccHHHHHhCChHH
Confidence 3 345567799999999998865
No 404
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=9.3e-12 Score=109.41 Aligned_cols=140 Identities=16% Similarity=0.264 Sum_probs=80.0
Q ss_pred EEEEEEeCeeeecC---CeeeecCCCCeEEEEcCCCCcHHHHHHHHHHH----hCCc-ccchhhhhHHHHHHhhCCCcee
Q psy17514 3 IKSMVLDGFKSYGT---RVEINDFDREFNAITGLNGTGKSNILDGICFV----LGIQ-VKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 3 ~~~l~l~~~~~~~~---~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~----~~~~-~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
+..|.|+||++|+. .....+|+..+++|+|||||||||++++|+++ .+|. .|.+.+.+ ..+.. ....
T Consensus 3 ~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~-~~~~~----~~~~ 77 (1311)
T TIGR00606 3 FLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHD-PKVAQ----ETDV 77 (1311)
T ss_pred cceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecC-CCcCc----cHhh
Confidence 56799999999973 33234577899999999999999999999644 4554 45544432 11110 1124
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCC--c----------eEEEECCEEe----CHHHH-HHHHHhcCccc
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPS--N----------TRYMINGSSV----NPKRV-SDLFSSVNLNV 137 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~--~----------~~~~~~~~~~----~~~~~-~~~l~~~~l~~ 137 (159)
.+.|.++|++.+. ..++|.+.+.... . ..+..+|... ....+ ..+.+.+|+..
T Consensus 78 ~a~V~l~F~~~~g----------~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~ 147 (1311)
T TIGR00606 78 RAQIRLQFRDVNG----------EECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSK 147 (1311)
T ss_pred hheeEEEEEcCCC----------CEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCH
Confidence 5778888875321 2345655542210 0 1122233221 12234 34567789876
Q ss_pred C--CCeeEEeChhHhHhhcCCCC
Q psy17514 138 N--NPHFLIMQGRVTKVLNMKPH 158 (159)
Q Consensus 138 ~--~~~~l~~q~~ia~~l~~~p~ 158 (159)
. ...-+++||.+. .+..+|+
T Consensus 148 ~~f~~vi~~~Qge~~-~~~~~~~ 169 (1311)
T TIGR00606 148 AVLNNVIFCHQEDSN-WPLSEGK 169 (1311)
T ss_pred HHHhhceeeCCcccc-cccCChH
Confidence 3 333455688764 3445664
No 405
>PLN03073 ABC transporter F family; Provisional
Probab=99.26 E-value=5.4e-12 Score=104.78 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=46.2
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh---CCcccchh
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL---GIQVKQVR 57 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~---~~~~g~i~ 57 (159)
..|+++|+ +.|++..+|.+++ |+.++|+|||||||||||++|+|.. .|+.|+|.
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~ 238 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL 238 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE
Confidence 35899999 9999888999998 7899999999999999999999853 35566664
No 406
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.23 E-value=7.5e-12 Score=95.62 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=48.9
Q ss_pred EEEEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 4 KSMVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+.|+++|+ ..|... -.+.++| ||++.|+|.|||||||+++.+.|+..|++|+|+++|
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg 384 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence 46899999 888664 2233444 899999999999999999999999999999999998
No 407
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.22 E-value=6.7e-12 Score=80.19 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=43.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR 104 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~ 104 (159)
+++++|+||||||||||++++. .|.+.+.+ +++...... ...+.+++++|.- ++ .++++
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g-~di~~~~~~--~~~~~~~~~~q~l----------f~--~ti~~ 73 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI------KRKHRLVG-DDNVEIRED--SKDELIGRNPELG----------LE--IRLRL 73 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh------CCeEEEee-EeHHHhhhh--hcCCEEEEechhc----------ch--hhHHh
Confidence 5899999999999999999986 66787777 454332221 1234455555541 22 37888
Q ss_pred EEEcCC
Q psy17514 105 QISIPS 110 (159)
Q Consensus 105 ~i~~~~ 110 (159)
||.++-
T Consensus 74 Ni~~~~ 79 (107)
T cd00820 74 NIFLIT 79 (107)
T ss_pred hceeee
Confidence 888753
No 408
>KOG0065|consensus
Probab=99.21 E-value=1e-12 Score=111.97 Aligned_cols=106 Identities=12% Similarity=0.160 Sum_probs=75.5
Q ss_pred cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC--CcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514 15 GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG--IQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDK 87 (159)
Q Consensus 15 ~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 87 (159)
+.+++|.+++ |-+++|+|+|||||||||+.|++=.. .-.|+|+++|.. ......++.+|||-|++
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p------~~q~tF~R~~GYvqQ~D-- 873 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFP------KDQETFARVSGYVEQQD-- 873 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCee------Cchhhhccccceeeccc--
Confidence 3467788888 45899999999999999999998642 237889998831 11123578899999986
Q ss_pred CCCCCCccCCCeEEEEEEEEcCCceEEEECCE---EeCHHHHHHHHHhcCccc
Q psy17514 88 KNCPIGYENDNTIVICRQISIPSNTRYMINGS---SVNPKRVSDLFSSVNLNV 137 (159)
Q Consensus 88 ~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~ 137 (159)
...+++||+|.+.+... .|.... .+..+-++++++.++|..
T Consensus 874 -------iH~~~~TVrESL~fSA~--LRlp~~v~~~ek~~yVe~Vi~lleL~~ 917 (1391)
T KOG0065|consen 874 -------IHSPELTVRESLRFSAA--LRLPKEVSDEEKYEYVEEVIELLELKE 917 (1391)
T ss_pred -------ccCcccchHHHHHHHHH--HcCCCcCCHHHHHHHHHHHHHHhCchh
Confidence 34588999999988643 332221 122245788888888874
No 409
>KOG0060|consensus
Probab=99.19 E-value=3.7e-11 Score=95.36 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=87.4
Q ss_pred EEEEeCe-eeecC-C-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT-R-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.++++++ ..=.. . .++++++ +.-.-|+||||||||+||+++.|+-+...|.+..-. +. ...
T Consensus 433 ~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~-------~~----~~~ 501 (659)
T KOG0060|consen 433 AIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPT-------DG----GPK 501 (659)
T ss_pred eEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecc-------cC----CCC
Confidence 5677777 44332 3 3344455 556789999999999999999999877788775322 00 114
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------CC------Cee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------NN------PHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~------~~~ 142 (159)
.+-|++|.| .++-=|.++++.++.+... ...+..+.+++...|+.+.|.+ +. -..
T Consensus 502 ~lfflPQrP----------Ymt~GTLRdQvIYP~~~~~-~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 502 DLFFLPQRP----------YMTLGTLRDQVIYPLKAED-MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred ceEEecCCC----------CccccchhheeeccCcccc-ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 589999997 3443489999999865333 2223345567777777776654 11 123
Q ss_pred EEe---Ch-hHhHhhcCCCC
Q psy17514 143 LIM---QG-RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~---q~-~ia~~l~~~p~ 158 (159)
||+ |+ ++||++..+|+
T Consensus 571 LS~GEqQRLa~ARLfy~kPk 590 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPK 590 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCc
Confidence 444 44 99999999996
No 410
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.16 E-value=1.2e-12 Score=89.96 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=61.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR 104 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~ 104 (159)
|++.-+||||||||||||-.++|+++ .+|+|.+.| .++......+ ..++-+|..|+.... | -+-|+.
T Consensus 25 Ge~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G-~~l~~~~~~e--LArhRAYLsQqq~p~--------f-~mpV~~ 91 (248)
T COG4138 25 GEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAG-QPLEAWSATE--LARHRAYLSQQQTPP--------F-AMPVWH 91 (248)
T ss_pred ceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECC-cchhHHhHhH--HHHHHHHHhhccCCc--------c-hhhhhh
Confidence 68889999999999999999999865 468999988 4443211111 122334555543211 1 133444
Q ss_pred EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe
Q psy17514 105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM 145 (159)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~ 145 (159)
.+...-- .+.....+.++...++|++ +...++|+
T Consensus 92 YL~L~qP-------~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSG 128 (248)
T COG4138 92 YLTLHQP-------DKTRTELLNDVAGALALDDKLGRSTNQLSG 128 (248)
T ss_pred hhhhcCc-------hHHHHHHHHHHHhhhcccchhhhhhhhcCc
Confidence 4433210 1222456788889999987 34456666
No 411
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.13 E-value=3.6e-11 Score=84.97 Aligned_cols=46 Identities=39% Similarity=0.634 Sum_probs=38.3
Q ss_pred EEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 5 SMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 5 ~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
+|+++||++|.+.. .+++.++++|+||||+||||++++|.+++...
T Consensus 1 ~i~i~nf~~~~~~~--i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 1 KIHIKNFRSFKDLE--IDFSPGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp EEEEEEETTEEEEE--EE--SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CEEEEEeCCCcceE--EEcCCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 47899998887655 36788999999999999999999999998654
No 412
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.07 E-value=1.4e-11 Score=87.23 Aligned_cols=142 Identities=18% Similarity=0.274 Sum_probs=89.3
Q ss_pred EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc----ccchhhhhHHHHHHhhC--
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ----VKQVRANTLQELIYKNG-- 69 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~----~g~i~~~~~~~~~~~~~-- 69 (159)
|.+.|+ ..+.. ..++++++ ||+.+++|++|||||-+.++|+|..+.. +-.+|+++ .++....+
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~-idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD-IDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhccccc-chhhcCChHH
Confidence 556666 55532 33556665 7999999999999999999999998654 44677776 34433221
Q ss_pred CCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEE----EEE---EcCCceEEEECCEEeCHHHHHHHHHhcCccc-----
Q psy17514 70 QAGVTKASVTLTFDNSDKKNCPIGYENDNTIVIC----RQI---SIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----- 137 (159)
Q Consensus 70 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~----~~i---~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 137 (159)
......+.|+++||+|..- +.|.-+|. +|| .+.++ +....+ ..++++.++|..+|+.+
T Consensus 83 RRk~ig~~isMIFQeP~sC-------LDPS~~iG~QlIq~IP~wTfkgr-WWq~F~--WrKrrAIeLLHrVGIKdHkDIM 152 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSC-------LDPSERVGRQLIQNIPAWTYKGR-WWQRFG--WRKRRAIELLHRVGIKDHKDIM 152 (330)
T ss_pred hhhhhccchhhhhcCchhh-------cChHHHHHHHHHhhCccccccch-Hhhhhc--hhHHHHHHHHHHhccccHHHHH
Confidence 1122356789999997421 22322222 222 12111 111112 24578899999999976
Q ss_pred -CCCeeEEe---Ch-hHhHhhcCCCC
Q psy17514 138 -NNPHFLIM---QG-RVTKVLNMKPH 158 (159)
Q Consensus 138 -~~~~~l~~---q~-~ia~~l~~~p~ 158 (159)
.+|..+-- |+ +||.|++++|+
T Consensus 153 ~SYP~ElTeGE~QKVMIA~A~AnqPr 178 (330)
T COG4170 153 RSYPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred HhCcchhccCcceeeeeehhhccCCc
Confidence 36766654 44 99999999985
No 413
>KOG0064|consensus
Probab=99.06 E-value=1e-10 Score=92.20 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=80.0
Q ss_pred EEEeCe-eeecCCe-eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYGTRV-EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~~~~-~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
|.++|+ .--.... ++..++ |--..|+||||||||+|+++|.|+-+...|.+..- ++..+
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P--------------~~~~m 547 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP--------------RPNNI 547 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC--------------CCcce
Confidence 566666 4433322 223333 34567999999999999999999987766655421 23458
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE-EEECCEEeCHHHHHHHHHhcCccc------------CCCeeEEe
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR-YMINGSSVNPKRVSDLFSSVNLNV------------NNPHFLIM 145 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~l~~ 145 (159)
.|++|.|. +.--|.+++|.++...+ ++ .+...++++..+|..+.|.+ +-..-+++
T Consensus 548 FYIPQRPY----------ms~gtlRDQIIYPdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~Lsg 615 (728)
T KOG0064|consen 548 FYIPQRPY----------MSGGTLRDQIIYPDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSG 615 (728)
T ss_pred EeccCCCc----------cCcCcccceeecCCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccc
Confidence 99999873 22337889998876532 22 12234567777777766643 11223444
Q ss_pred ---Ch-hHhHhhcCCCC
Q psy17514 146 ---QG-RVTKVLNMKPH 158 (159)
Q Consensus 146 ---q~-~ia~~l~~~p~ 158 (159)
|+ .+||++..+|+
T Consensus 616 GekQR~~mARm~yHrPk 632 (728)
T KOG0064|consen 616 GEKQRMGMARMFYHRPK 632 (728)
T ss_pred hHHHHHHHHHHHhcCcc
Confidence 44 89999999986
No 414
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.05 E-value=1.8e-10 Score=83.53 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=22.7
Q ss_pred CCeeeecCC-----CCeEEEEcCCCCcHHHHH
Q psy17514 16 TRVEINDFD-----REFNAITGLNGTGKSNIL 42 (159)
Q Consensus 16 ~~~~l~~~~-----~~~~~liG~NGaGKSTLl 42 (159)
+..+|.++| +|+++|+||||||||||+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 345667776 799999999999999996
No 415
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.02 E-value=1.2e-10 Score=90.50 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=40.0
Q ss_pred EEEeCe-eeecCCeeeecCC------CCeEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514 6 MVLDGF-KSYGTRVEINDFD------REFNAITGLNGTGKSNILDGICFVLGIQVKQ 55 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~------~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~ 55 (159)
++...+ |.|++.. ..++ +|+++++||||-||||+.++|+|.+.|++|.
T Consensus 343 v~y~~~~k~~g~F~--L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 343 VEYPDLKKTYGDFK--LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred eecchheeecCceE--EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 556677 7888765 2343 6899999999999999999999999999886
No 416
>KOG0927|consensus
Probab=99.01 E-value=1.1e-10 Score=92.16 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=75.1
Q ss_pred EEEeCe-eeecCC-eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSYGTR-VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~~~~-~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
+.+.|+ ..|.+. .++.+++ .+.+++||||||||||||+.++|.+.|..|.++... ...+
T Consensus 390 i~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~--------------H~~~ 455 (614)
T KOG0927|consen 390 IMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS--------------HNKL 455 (614)
T ss_pred EEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc--------------cccc
Confidence 556777 677654 3444444 367899999999999999999999999999886432 1122
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCe-eEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPH-FLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~-~l~~-q~---~ia 150 (159)
.+.-|.... .+.-+.+..+++.-. + ......+.++.++..+||.. ..|. +||. |+ .+|
T Consensus 456 ~~y~Qh~~e-------~ldl~~s~le~~~~~----~---~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa 521 (614)
T KOG0927|consen 456 PRYNQHLAE-------QLDLDKSSLEFMMPK----F---PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFA 521 (614)
T ss_pred hhhhhhhHh-------hcCcchhHHHHHHHh----c---cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHH
Confidence 222222110 011112222222111 1 11234578889999999985 3454 4444 44 788
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
+++...|.
T Consensus 522 ~l~~kqP~ 529 (614)
T KOG0927|consen 522 RLAVKQPH 529 (614)
T ss_pred HHHhcCCc
Confidence 88877774
No 417
>KOG0066|consensus
Probab=98.99 E-value=1.5e-10 Score=89.83 Aligned_cols=124 Identities=16% Similarity=0.098 Sum_probs=79.5
Q ss_pred EEEEeCe-eee-cCCeeeecCCC-----CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSY-GTRVEINDFDR-----EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~-~~~~~l~~~~~-----~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|-++++ ..| +..+.+..+++ .-+||+||||.||||||+.|.|-+.|..|+.|-+ .+-+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn--------------hrL~ 651 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN--------------HRLR 651 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc--------------ceee
Confidence 4678888 888 55666777775 3589999999999999999999999998887643 3556
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccC----CCeeEEe-Ch---hH
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVN----NPHFLIM-QG---RV 149 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~l~~-q~---~i 149 (159)
|++.-|.... .++..+.-.-.. .+..+ ...+.++..|..+||..+ ....||+ |. ++
T Consensus 652 iG~FdQh~~E-----------~L~~Eetp~EyL---qr~FN--lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal 715 (807)
T KOG0066|consen 652 IGWFDQHANE-----------ALNGEETPVEYL---QRKFN--LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL 715 (807)
T ss_pred eechhhhhHH-----------hhccccCHHHHH---HHhcC--CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH
Confidence 7776654321 122222111000 11111 223567788888888652 2345666 54 66
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|.++...|+
T Consensus 716 aeLal~~PD 724 (807)
T KOG0066|consen 716 AELALGGPD 724 (807)
T ss_pred HHHhcCCCC
Confidence 676666664
No 418
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=98.98 E-value=1.4e-09 Score=83.70 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=43.6
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK 54 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g 54 (159)
|++.+|+|.||+++.... ..+ .+.++|||+|++||||+|+||+.++.++..
T Consensus 1 M~l~~i~i~~FRgi~~~~--~~l-~~~t~liG~N~~GKss~l~Al~~~l~~~~~ 51 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLS--LPL-DDNTVLIGENNWGKSSLLDALSLLLSPSRR 51 (373)
T ss_pred CeEEEEEEeccCccceEE--EEe-cCceEEEcCCCccHhHHHHHHHHHhCCCcc
Confidence 899999999998887654 234 468999999999999999999999998743
No 419
>KOG0062|consensus
Probab=98.97 E-value=1.2e-10 Score=91.28 Aligned_cols=43 Identities=30% Similarity=0.554 Sum_probs=37.1
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~ 47 (159)
-|.+.+| -.|+++.+|.+-+ |.-++|+|+||+||||||++|+.
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3778899 9999988776655 67789999999999999999986
No 420
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.96 E-value=1e-08 Score=81.95 Aligned_cols=123 Identities=24% Similarity=0.403 Sum_probs=85.4
Q ss_pred eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
|+..|.|+||.-+.... .+|+.++++|+|++|||||-++++|..+++.... .++++.+. .+..|..+
T Consensus 1 ML~~LsIknfaiIe~L~--leF~~GltVlTGETGAGKSIiidAl~lllG~ra~-------~~~VR~G~----~~a~v~a~ 67 (557)
T COG0497 1 MLLELSIKNFAIIEELE--LEFEKGLTVLTGETGAGKSIIIDALGLLLGGRAD-------ASLVRHGA----KRAEVEAI 67 (557)
T ss_pred CCcEEeeeheeeeeeee--eeccCCceEEecCCCCcHhHHHHHHHHHhCCCCC-------cchhcCCC----ceeEEEEE
Confidence 46789999996666655 4677899999999999999999999999887621 12233232 46778888
Q ss_pred EEcCCCC----CCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHh-cCccc
Q psy17514 82 FDNSDKK----NCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSS-VNLNV 137 (159)
Q Consensus 82 ~q~~~~~----~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~ 137 (159)
|..+.+. +...+....+..-+++.+...+++.+++|+..+....+.++... +.|..
T Consensus 68 F~~~~~~~~~~L~e~gie~~~~iilrR~i~~~GrSr~~INg~~Vs~~~L~~l~~~Li~IHG 128 (557)
T COG0497 68 FDLDNPPARAWLEENGIEDDEEVILRRVISADGRSRAFINGQPVSLAQLKELGQLLIDIHG 128 (557)
T ss_pred ecCCchHHHHHHHHcCCCCcCcEEEEEEEcCCCceeEEECCEEeeHHHHHHHHHhhheeec
Confidence 8765111 11122222234556777877788899999999998888877653 45543
No 421
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.92 E-value=1.1e-09 Score=96.44 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=48.4
Q ss_pred EEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+.+|.+.|+.+|.+.+ .++++++++|+|+|||||||+|++|++++.+..|.+.+++
T Consensus 7 i~~l~l~N~~~~~~~~--~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~ 62 (1486)
T PRK04863 7 FRSLTLVNWNGFFART--FDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (1486)
T ss_pred eeEEEEecccCccceE--EEecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEECC
Confidence 6789999998887765 4688889999999999999999999999988877776554
No 422
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.82 E-value=2.1e-08 Score=83.07 Aligned_cols=50 Identities=36% Similarity=0.571 Sum_probs=39.4
Q ss_pred CeEEEEEEeCeeeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
|.+..|++.||..|.+...+ +++ ..+++|+||||+||||||++|.+++..
T Consensus 1 M~i~~l~l~nf~~~~~~~~~-~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG 54 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTF-DLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYG 54 (650)
T ss_pred CcccEEEEeceEEEcCCcee-eeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 88899999999777654322 233 248999999999999999999888743
No 423
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.82 E-value=5.4e-10 Score=88.40 Aligned_cols=143 Identities=13% Similarity=0.193 Sum_probs=96.4
Q ss_pred EEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 5 SMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 5 ~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
.++++|+...+ .+.++| ||+++|.|-=|||+|-|+++|.|+.++.+|+|+++| +.+.... .....++.|+
T Consensus 263 ~l~v~~l~~~~---~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G-~~v~~~s-p~~Ai~~Gi~ 337 (500)
T COG1129 263 VLEVRNLSGGG---KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG-KPVRIRS-PRDAIKAGIA 337 (500)
T ss_pred EEEEecCCCCC---ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECC-EEccCCC-HHHHHHcCCE
Confidence 35666662222 123444 899999999999999999999999888999999998 4332211 2223467899
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE---ECCEEeCHHHHHHHHHhcCccc---CC-CeeEEe--Ch--h
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM---INGSSVNPKRVSDLFSSVNLNV---NN-PHFLIM--QG--R 148 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~---~~-~~~l~~--q~--~ 148 (159)
|++++.... .++..++|.+|+.++....+. +-+.....+.+.++.+.+++.. +. ...||+ |+ .
T Consensus 338 ~v~EDRk~~------Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 338 YVPEDRKSE------GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred eCCcccccC------cCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 998874321 366677899999886221111 1122223456778888898865 23 356777 44 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
|||.|+.+|+
T Consensus 412 larwL~~~p~ 421 (500)
T COG1129 412 LARWLATDPK 421 (500)
T ss_pred HHHHHhcCCC
Confidence 9999999986
No 424
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.76 E-value=1.2e-08 Score=70.42 Aligned_cols=51 Identities=37% Similarity=0.485 Sum_probs=37.1
Q ss_pred EEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514 6 MVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQV 56 (159)
Q Consensus 6 l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i 56 (159)
+.+.+++.|.....+.-.++.+++|+||||+||||+++++.+......+.+
T Consensus 2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~ 52 (162)
T cd03227 2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSAT 52 (162)
T ss_pred ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhh
Confidence 456677777544433322345999999999999999999998887665444
No 425
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.75 E-value=3.1e-09 Score=83.69 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=33.4
Q ss_pred eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhh
Q psy17514 19 EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANT 60 (159)
Q Consensus 19 ~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~ 60 (159)
+|.+++ |++++|+|||||||||||+ .++..|++| +|+++|
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg 66 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDA 66 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECC
Confidence 456655 7999999999999999999 677777777 688887
No 426
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.72 E-value=1.1e-08 Score=72.88 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=53.1
Q ss_pred eeecCC---CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCcc
Q psy17514 19 EINDFD---REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYE 95 (159)
Q Consensus 19 ~l~~~~---~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 95 (159)
++.+++ +++++|+||||||||||+++|++.... ...| .++ .. -.+++|. ..
T Consensus 16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G-~~v---------~a--~~~~~q~---------~~ 69 (199)
T cd03283 16 VANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVIL-----AQAG-APV---------CA--SSFELPP---------VK 69 (199)
T ss_pred ecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHH-----HHcC-CEE---------ec--CccCccc---------ce
Confidence 444444 579999999999999999999874321 1112 000 01 1355662 25
Q ss_pred CCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc
Q psy17514 96 NDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL 135 (159)
Q Consensus 96 ~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 135 (159)
+++.+++.+++..+... + ....+++.++++.+++
T Consensus 70 l~~~~~~~d~l~~~~s~-~-----~~e~~~~~~iL~~~~~ 103 (199)
T cd03283 70 IFTSIRVSDDLRDGISY-F-----YAELRRLKEIVEKAKK 103 (199)
T ss_pred EEEeccchhccccccCh-H-----HHHHHHHHHHHHhccC
Confidence 67778999998776431 1 1123567788888774
No 427
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.71 E-value=8.2e-09 Score=77.83 Aligned_cols=57 Identities=26% Similarity=0.362 Sum_probs=44.0
Q ss_pred CeEEEEEEeCeeeecCCeeeecCC-CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhh
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFD-REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRAN 59 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~ 59 (159)
|.+..|.+.||++|.+.. ..++ .+++.|+||||+||||+|++|..++.+- .+.++..
T Consensus 1 mrLrkiSl~nfr~f~~ld--itf~e~~ttIivgpNGsGKTtvLdair~aL~~fid~~i~~~ 59 (440)
T COG3950 1 MRLRKISLNNFRCFLNLD--ITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLR 59 (440)
T ss_pred Cccchhhhhhhhhhhhce--eecCCCceEEEECCCCCChhhHHHHHHHHHHhhccceeecc
Confidence 667789999998887755 2344 5699999999999999999998887654 3455443
No 428
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.70 E-value=1.3e-08 Score=71.73 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS 85 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 85 (159)
++.++|+||||||||||+++|+++++++.|.+.+.+..++. .. ....+.++++.+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~--~~----~~~~~~~~~~~~ 79 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQ--LP----HPNWVRLVTRPG 79 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccC--CC----CCCEEEEEEecC
Confidence 68999999999999999999999999888887775522211 11 234566666654
No 429
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.69 E-value=1.4e-09 Score=80.72 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=32.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
.-++|+||||||||||+++|++++.+..|++.++|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g 146 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG 146 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC
Confidence 35699999999999999999999999999998887
No 430
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.68 E-value=1.7e-08 Score=77.51 Aligned_cols=47 Identities=43% Similarity=0.702 Sum_probs=39.7
Q ss_pred eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
|+.+++++||+++.+... .++ +.+++|+|+||||||+||+|+..+..
T Consensus 1 MI~~~~IkNFkSf~e~~~-~~~-~~in~I~G~N~sGKSNlleAl~f~~~ 47 (371)
T COG1106 1 MIKSFKIKNFKSFRELEL-EDF-GKINIIYGANGAGKSNLLEALYFLKG 47 (371)
T ss_pred CceEEEecccccHHHhhh-ccc-cceEEEEcCCCCchhHHHHHHHHHHH
Confidence 477899999999987652 334 78999999999999999999988764
No 431
>KOG0065|consensus
Probab=98.67 E-value=2e-08 Score=86.51 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=81.2
Q ss_pred eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCC
Q psy17514 18 VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKN 89 (159)
Q Consensus 18 ~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 89 (159)
+++++++ ++++.+.||.||||||||++++|-+.-. .|++.++|. +.. . ...++.++|..|..
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~-~~~---e--~~~~~~~aY~~e~D---- 198 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGH-DLK---E--FVPKKTVAYNSEQD---- 198 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCC-ccc---c--cccCceEEeccccc----
Confidence 4667776 6899999999999999999999877543 457888873 211 1 11256788888874
Q ss_pred CCCCccCCCeEEEEEEEEcCCceEEEECCEE----eCHH----HHHHHHHhcCccc--C------CCeeEEe-Ch---hH
Q psy17514 90 CPIGYENDNTIVICRQISIPSNTRYMINGSS----VNPK----RVSDLFSSVNLNV--N------NPHFLIM-QG---RV 149 (159)
Q Consensus 90 ~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~----~~~~----~~~~~l~~~~l~~--~------~~~~l~~-q~---~i 149 (159)
..++++||+|.+.+..+ ++..+.+ ...+ ..+.+++.+||++ + ---..|+ |+ .+
T Consensus 199 -----vH~p~lTVreTldFa~r--ck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi 271 (1391)
T KOG0065|consen 199 -----VHFPELTVRETLDFAAR--CKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSI 271 (1391)
T ss_pred -----cccceeEEeehhhHHHh--ccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeee
Confidence 57899999999998654 3322111 1112 2446789999986 1 1122333 33 67
Q ss_pred hHhhcCCC
Q psy17514 150 TKVLNMKP 157 (159)
Q Consensus 150 a~~l~~~p 157 (159)
+.+++..|
T Consensus 272 ~E~~v~~~ 279 (1391)
T KOG0065|consen 272 GEMLVGPA 279 (1391)
T ss_pred eeeeecCc
Confidence 77766655
No 432
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.66 E-value=2.9e-09 Score=83.37 Aligned_cols=147 Identities=10% Similarity=0.180 Sum_probs=100.0
Q ss_pred EEEEeCeeeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGFKSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++++...++ ...+.++| +|+++|.|-.|-|-+-|+++|+|+.++.+|+|.++| +++..+.......+..
T Consensus 257 vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G-~~v~~~~~~~~~r~~G 335 (501)
T COG3845 257 VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNG-KDVLGRLSPRERRRLG 335 (501)
T ss_pred EEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECC-EeccccCCHHHHHhcC
Confidence 478888843333 35567777 799999999999999999999999988889999998 4541111222234567
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE--EEEC---CEEeCHHHHHHHHHhcCccc---CC-CeeEEe---
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR--YMIN---GSSVNPKRVSDLFSSVNLNV---NN-PHFLIM--- 145 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~--~~~~---~~~~~~~~~~~~l~~~~l~~---~~-~~~l~~--- 145 (159)
+++++++... +.+.+++++.+|+.+..-.. +... ......+...++++.+++.. .. ...||+
T Consensus 336 ~~~VPedR~~------~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNq 409 (501)
T COG3845 336 LAYVPEDRHG------HGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQ 409 (501)
T ss_pred CccCChhhcc------CccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcce
Confidence 9999987532 35667789999987643210 1111 12333556778899999875 22 456777
Q ss_pred Ch-hHhHhhcCCCC
Q psy17514 146 QG-RVTKVLNMKPH 158 (159)
Q Consensus 146 q~-~ia~~l~~~p~ 158 (159)
|+ -+||=+..+|+
T Consensus 410 QK~IlaREl~~~p~ 423 (501)
T COG3845 410 QKLILARELARRPD 423 (501)
T ss_pred ehhhhhhhhccCCC
Confidence 44 77777777775
No 433
>PF13175 AAA_15: AAA ATPase domain
Probab=98.63 E-value=3.7e-08 Score=76.99 Aligned_cols=46 Identities=30% Similarity=0.564 Sum_probs=38.0
Q ss_pred EEEEEEeCeeeecCC-eeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 3 IKSMVLDGFKSYGTR-VEINDFDREFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 3 ~~~l~l~~~~~~~~~-~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+..|+++||++|++. . -+++.++++|||.|||||||+|+||.-+..
T Consensus 1 ik~i~IkNfR~i~~~~~--i~~~~~itiiiG~N~sGKT~IL~aL~~~~~ 47 (415)
T PF13175_consen 1 IKKIRIKNFRSIKDSGE--INFDEDITIIIGENNSGKTNILEALDLFFN 47 (415)
T ss_pred CcEEEEecccccCccce--eecCCceEEEEccCCCCHHHHHHHHHHhcC
Confidence 357899999999887 4 356678999999999999999999954443
No 434
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=9.4e-08 Score=75.25 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=54.1
Q ss_pred EEEeCe-eeec-CCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhH--HHHHHh--hCCCceeE
Q psy17514 6 MVLDGF-KSYG-TRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL--QELIYK--NGQAGVTK 75 (159)
Q Consensus 6 l~l~~~-~~~~-~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~--~~~~~~--~~~~~~~~ 75 (159)
++.+++ +.|. +..+++.+. ++.++|+|+||+|||||+++|+++..++.|.+...|. +++... .......+
T Consensus 140 ~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~ 219 (450)
T PRK06002 140 MTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLK 219 (450)
T ss_pred eEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhC
Confidence 566777 6674 334444444 7899999999999999999999999998876655320 222110 11011235
Q ss_pred EEEEEEEEcCC
Q psy17514 76 ASVTLTFDNSD 86 (159)
Q Consensus 76 ~~i~~v~q~~~ 86 (159)
+.|++++|..+
T Consensus 220 rtI~vV~qsd~ 230 (450)
T PRK06002 220 KAVAVVATSDE 230 (450)
T ss_pred CeEEEEEcCCC
Confidence 68999999754
No 435
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=1.7e-08 Score=75.36 Aligned_cols=53 Identities=26% Similarity=0.463 Sum_probs=41.9
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQV 56 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i 56 (159)
||+..|.++|++++.+.. .++ ..+++|||.||+||||+++++..+-....|++
T Consensus 1 ~~l~si~vknyRs~r~l~--lei-~~~nviIGANGaGKSn~~~~l~~l~~a~~g~l 53 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLD--LEI-RRVNVIIGANGAGKSNFYDALRLLADAVRGNL 53 (373)
T ss_pred CccchhhhhcchhHHhcc--ccc-cceEEEEcCCCCchhHHHHHHHHHHHHHhhhH
Confidence 788889999998886643 123 67899999999999999999987766555543
No 436
>KOG2355|consensus
Probab=98.58 E-value=5.2e-08 Score=69.05 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=43.5
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
.|++.|+ ..|.. .+.+.+++ +.-..++|.|||||||||+.|+|---...|.|...|
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlg 75 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLG 75 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcC
Confidence 5899999 88863 45666676 456789999999999999999986544456666666
No 437
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.53 E-value=7.6e-08 Score=74.54 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=29.0
Q ss_pred CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..++.+++ +++.+|+|+|||||||+|++|.|...
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~ 434 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence 34566776 78999999999999999999999864
No 438
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.52 E-value=7.3e-08 Score=67.85 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+++++|+||||||||||+++|++...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 468899999999999999999988765
No 439
>KOG0927|consensus
Probab=98.52 E-value=1.1e-07 Score=75.49 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=43.6
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQV 56 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i 56 (159)
-+.+.|+ .+|.+..++.+.. ++-++|+|+|||||||+|++|++...|..-++
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 4788899 8888888777776 56789999999999999999999988864433
No 440
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.49 E-value=1.3e-07 Score=66.11 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 24 DREFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
.+++++|+|+||||||||+++|++++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 37899999999999999999999998763
No 441
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.46 E-value=1.3e-07 Score=68.71 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQ 55 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~ 55 (159)
..+++|.||||||||||.+.|++++.+..|.
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 4689999999999999999999999988776
No 442
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.43 E-value=1.8e-07 Score=66.71 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
+++++|+|||||||||||++|++.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 579999999999999999999854
No 443
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.41 E-value=2e-07 Score=66.69 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.+++|+||||||||||+++|++++.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 678999999999999999999998874
No 444
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.38 E-value=1.9e-07 Score=70.06 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC--Ccccch
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG--IQVKQV 56 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~--~~~g~i 56 (159)
..+++|.|+|||||||+.+.|.+++. ++.|.+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V 95 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKV 95 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCce
Confidence 46899999999999999999999986 555554
No 445
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.35 E-value=4.8e-07 Score=63.16 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
+.+++|+||||||||||+++|+..+.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 3578999999999999999999887543
No 446
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.33 E-value=5.4e-07 Score=64.21 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++++|+||+|||||||++.|++.++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 68899999999999999999999875
No 447
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=3.9e-07 Score=63.66 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
.-+++|+|+||+||||||++|+-....
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~~~~ 63 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAGMGF 63 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhhccc
Confidence 468999999999999999999866543
No 448
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.33 E-value=7.5e-07 Score=72.04 Aligned_cols=50 Identities=24% Similarity=0.501 Sum_probs=44.7
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
|++.++++.||+++.... ..++.+.++|||+|=+|||++|++|..++.+.
T Consensus 1 M~L~~v~I~nFR~i~~ls--l~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~ 50 (581)
T COG3593 1 MHLERVKIKNFRGINRLS--LEFEEGLNVLIGENNSGKSSLLDALRLLLDPE 50 (581)
T ss_pred CcceeEEecccceeeeee--eeecCCceEEEcCCCcchHHHHHHHHHHcCCc
Confidence 889999999999987765 35667899999999999999999999999884
No 449
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.30 E-value=4.1e-07 Score=64.80 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGIC 46 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~ 46 (159)
.+++|+||||+||||||++|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 389999999999999999998
No 450
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.30 E-value=5.4e-07 Score=65.18 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+++|.|+||||||||.+.|.+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5799999999999999999999864
No 451
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.29 E-value=1.4e-07 Score=68.39 Aligned_cols=24 Identities=54% Similarity=0.919 Sum_probs=0.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+|+|||||||+|++|..+..
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~~ 24 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLFS 24 (303)
T ss_dssp ------------------------
T ss_pred CCcccccccccccccccccccccc
Confidence 578999999999999999988753
No 452
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.29 E-value=6.3e-07 Score=66.83 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQVKQ 55 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~~g~ 55 (159)
+++|+|+||||||||+++|++++++..+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~ 29 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVT 29 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceE
Confidence 57999999999999999999999876553
No 453
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.26 E-value=1.5e-06 Score=77.12 Aligned_cols=49 Identities=24% Similarity=0.233 Sum_probs=39.1
Q ss_pred eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHH-HHhCCc
Q psy17514 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGIC-FVLGIQ 52 (159)
Q Consensus 2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~-~~~~~~ 52 (159)
.+.++-+.|+..|.+.. .+++++.++|+|+|||||||+|++|. .++..+
T Consensus 3 ~~~R~gliN~~~~~~~~--~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~ 52 (1353)
T TIGR02680 3 RPHRAGLVNLWYYDEQE--FWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGK 52 (1353)
T ss_pred eeeeEEEEEeccccceE--EecCCCeEEEECCCCCcHHHHHHHHHHHHhcCC
Confidence 35678899998887755 57889999999999999999999854 444443
No 454
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.26 E-value=1.1e-06 Score=62.92 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+++++|+||||+||||++++|+++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998764
No 455
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.23 E-value=8.6e-07 Score=61.85 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++|+||||||||||++.|+...+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 46889999999999999999998653
No 456
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.20 E-value=1.3e-06 Score=62.04 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+++|+||||||||||.++|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999987
No 457
>PLN02796 D-glycerate 3-kinase
Probab=98.20 E-value=1.2e-06 Score=66.89 Aligned_cols=34 Identities=12% Similarity=0.343 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANT 60 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~ 60 (159)
+++|+|++|||||||+++|.+++.+. .|.+..++
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 58999999999999999999999764 45555443
No 458
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.16 E-value=1.1e-06 Score=70.48 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=40.2
Q ss_pred eCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh
Q psy17514 9 DGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN 59 (159)
Q Consensus 9 ~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~ 59 (159)
.+| ..|++..++..++ ++.++|+||||+|||||++.|.+++++..|+....
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le 244 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALE 244 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEe
Confidence 467 6676655544444 68899999999999999999999999988765443
No 459
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.14 E-value=1.7e-06 Score=59.40 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVR 57 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~ 57 (159)
+.+++|+|++|+|||||+++|.+-.....++|+
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 689999999999999999999876544444444
No 460
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.13 E-value=2.1e-06 Score=65.41 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+.+++|+||||+||||++..|++.+.+..+++.+.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 679999999999999999999999887766665543
No 461
>PRK08149 ATP synthase SpaL; Validated
Probab=98.12 E-value=4.4e-06 Score=65.72 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhhHHHH---HHhhCCCceeEEEEEEEEEcCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANTLQEL---IYKNGQAGVTKASVTLTFDNSD 86 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~~~~~---~~~~~~~~~~~~~i~~v~q~~~ 86 (159)
++.++|+|+||+|||||+++|++...++. |.|...+ .++ ..... ......++++|+...+
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg-~ev~e~~~~~l-~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERG-REVTEFVESLR-ASSRREKCVLVYATSD 216 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCC-ccHHHHHHHHh-hcccccceEEEEECCC
Confidence 78999999999999999999999887774 6555554 232 22111 1223467888887654
No 462
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.11 E-value=2.3e-06 Score=61.72 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++++|+||||+||||+|++|+++.
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH
Confidence 4789999999999999999998653
No 463
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.10 E-value=2.2e-06 Score=65.09 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN 59 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~ 59 (159)
++.++|+||+|||||||+++|.+.+++..+.+.+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 57889999999999999999999998877765554
No 464
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.10 E-value=2.3e-06 Score=64.31 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
+.+++++|+||+|||||+++|.+...++.|++..
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 5789999999999999999999998888887754
No 465
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.09 E-value=2.6e-06 Score=61.35 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~ 47 (159)
.+.+|+||||+||||||+.|..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999984
No 466
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.07 E-value=3.5e-06 Score=61.01 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH-HhCCcccchh
Q psy17514 25 REFNAITGLNGTGKSNILDGICF-VLGIQVKQVR 57 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~-~~~~~~g~i~ 57 (159)
+++++|+||||+||||+|++|++ .+.+..|.+.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v 64 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV 64 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 57899999999999999999998 4455566543
No 467
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.06 E-value=3.5e-06 Score=60.29 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++|.|+||||||||.++|+..+.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999999873
No 468
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.06 E-value=3.2e-06 Score=60.03 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcccchh
Q psy17514 28 NAITGLNGTGKSNILDGICFVLGIQVKQVR 57 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~~~~g~i~ 57 (159)
++|+|++|+|||||+++|.+...+..|.+.
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~ 33 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAP 33 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccc
Confidence 689999999999999999997766555443
No 469
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.06 E-value=2.1e-06 Score=60.19 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHH---HHhCCcccch
Q psy17514 26 EFNAITGLNGTGKSNILDGIC---FVLGIQVKQV 56 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~---~~~~~~~g~i 56 (159)
.+++|+|++||||||+.+.|+ |+..++.|++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~ 37 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDL 37 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 578999999999999999998 5555555554
No 470
>PRK00098 GTPase RsgA; Reviewed
Probab=98.06 E-value=2.8e-06 Score=64.19 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 24 DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
.+.+++|+|+||+|||||+++|.+...+..|++..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 36789999999999999999999988888787764
No 471
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=3.7e-06 Score=65.02 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+++++|+|+||+|||||+++|.+...++.|++...+
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~ 230 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDD 230 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECC
Confidence 579999999999999999999999999999988764
No 472
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.03 E-value=3.8e-06 Score=65.68 Aligned_cols=36 Identities=8% Similarity=0.244 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~ 60 (159)
.-+++|.|++|||||||.+.|.+++.+. .+.|..++
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 3578999999999999999999998654 45555544
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.03 E-value=5e-06 Score=59.18 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGIQ-VKQVR 57 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~ 57 (159)
+++.|+||+||||||++++|...+.+. .+.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~ 34 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHIL 34 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEE
Confidence 578999999999999999988777643 44443
No 474
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.01 E-value=7.2e-06 Score=64.65 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=39.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhh--HHHHHHh-hCCCceeEEEEEEEEEcC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANT--LQELIYK-NGQAGVTKASVTLTFDNS 85 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~--~~~~~~~-~~~~~~~~~~i~~v~q~~ 85 (159)
++.++|+|+||+|||||+++|++...++. |.+-..+ ..++... -......+..+++.+++.
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 68999999999999999999999987764 2222222 1111111 111223456788888774
No 475
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.01 E-value=3.6e-06 Score=67.16 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQV 53 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~ 53 (159)
+.+++|+||||+||||++..|++.+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~ 284 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH 284 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc
Confidence 67999999999999999999998765443
No 476
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.01 E-value=4e-06 Score=57.77 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|++|||||||++.+.+.
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcC
Confidence 4789999999999999999986
No 477
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=4.8e-06 Score=65.44 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
+++++|+||||+||||++..|++.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999999875
No 478
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.01 E-value=5e-06 Score=55.74 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
+++|+||+|||||||++.|+..+++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 46899999999999999999876543
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.00 E-value=5e-06 Score=57.81 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
.+++|+|++|||||||++.|...+.+
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhh
Confidence 47899999999999999999988865
No 480
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.00 E-value=5.6e-06 Score=65.38 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcc---cchhhhhH--HHHHHhhCCCceeEEEEEEEEEcCCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQV---KQVRANTL--QELIYKNGQAGVTKASVTLTFDNSDK 87 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~---g~i~~~~~--~~~~~~~~~~~~~~~~i~~v~q~~~~ 87 (159)
++.++|+|+||+|||||+++|+++..++. |.|...+. .+++.... .......+++|++..+
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~--~~~~~~~tvVv~~~ad 240 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENIL--GAEGRARSVVIAAPAD 240 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhc--CcCCCceEEEEEECCC
Confidence 68999999999999999999999988874 55555441 22222111 1123567788887543
No 481
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.99 E-value=8.9e-06 Score=64.39 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=42.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhH-----HHHHHhhCCCceeEEEEEEEEEc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTL-----QELIYKNGQAGVTKASVTLTFDN 84 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~-----~~~~~~~~~~~~~~~~i~~v~q~ 84 (159)
++.++|+|+||+|||||+++|++...++.|.+...|. .+++...-.....++.|.++.+.
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 7899999999999999999999999998887766321 22222111112245678888754
No 482
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.98 E-value=6.5e-06 Score=63.67 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++++|+||+||||||+|++|...+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 48899999999999999999998874
No 483
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.98 E-value=5.7e-06 Score=58.81 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~ 60 (159)
+.+++|+|+||||||||.+.|...+.+. .|.+.+++
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~ 60 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 6899999999999999999999987544 34555554
No 484
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.97 E-value=5.3e-06 Score=67.41 Aligned_cols=33 Identities=12% Similarity=0.324 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+++|.||||||||||.+.|.+++ +..|.|..++
T Consensus 67 IIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDd 99 (656)
T PLN02318 67 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDN 99 (656)
T ss_pred EEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcc
Confidence 78999999999999999999987 3455565554
No 485
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.97 E-value=8.5e-06 Score=58.06 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
.++|+||+|||||||++.+.+.+.+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~ 28 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQK 28 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 47899999999999999999887665
No 486
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=97.96 E-value=4.6e-06 Score=58.72 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=34.0
Q ss_pred EEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 4 KSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 4 ~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
.+|.+-|+..|--++ .+++.-++.|.|.|||||||+|-+..-.+-|+-.-+++
T Consensus 8 ~SLtlVNwNG~fart--fdLd~lvTtL~G~NGAGKsT~m~Af~taLIPD~~~l~f 60 (227)
T PF04310_consen 8 RSLTLVNWNGFFART--FDLDELVTTLSGGNGAGKSTTMAAFITALIPDQTLLHF 60 (227)
T ss_dssp EEEEEECETTECEEE--EEHHCCCCCCCCSTTCCHHHHHHHHHHHHS--TTT---
T ss_pred ceEEEEeecCeeeeE--eehhhheEeeecCCCCcchhhHHHHHHHhcccceEEee
Confidence 456666663332233 23445688999999999999999998888887544444
No 487
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.95 E-value=8.9e-06 Score=53.32 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
+..+.|+||+|+||||+++.|+..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3568899999999999999999887654
No 488
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.94 E-value=8.4e-06 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|.|++||||||+.+.|+-.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999987643
No 489
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.94 E-value=5.8e-06 Score=55.61 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|++|||||||++.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 589999999999999999886
No 490
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.92 E-value=6e-06 Score=56.07 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHH--HHhCCccc
Q psy17514 28 NAITGLNGTGKSNILDGIC--FVLGIQVK 54 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~--~~~~~~~g 54 (159)
++|+|++|||||||++.|. ....+.++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~ 30 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSK 30 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecC
Confidence 5899999999999999998 44444433
No 491
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.91 E-value=8.3e-06 Score=57.38 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
+.+|+||||+||||+|+.+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999983
No 492
>PRK07429 phosphoribulokinase; Provisional
Probab=97.91 E-value=1e-05 Score=61.83 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=24.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQV 53 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~~ 53 (159)
+++|.|+|||||||+.+.|++++++..
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 689999999999999999999988664
No 493
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.91 E-value=2.1e-05 Score=57.27 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=31.6
Q ss_pred EEEeCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHH-HHHHHHHhCCc
Q psy17514 6 MVLDGF-KSYGTRVEINDFDREFNAITGLNGTGKSNI-LDGICFVLGIQ 52 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTL-l~~i~~~~~~~ 52 (159)
+.+.++ +.+++.- ..++++.|+|+|||||||| ++.++++....
T Consensus 8 ~~~~~ld~~l~ggi----~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g 52 (230)
T PRK08533 8 LSRDELHKRLGGGI----PAGSLILIEGDESTGKSILSQRLAYGFLQNG 52 (230)
T ss_pred EEEeeeehhhCCCC----CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 556677 6555421 2278999999999999999 68888876543
No 494
>KOG0062|consensus
Probab=97.90 E-value=1.9e-06 Score=68.22 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=76.4
Q ss_pred EEEEeCe-eeecCCe--eeecCCC-----CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGTRV--EINDFDR-----EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~--~l~~~~~-----~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.+++..+ ..|.... .+..++. .-.+++|+||+||||+++++.+-+.|..|.+... .+.
T Consensus 362 ~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~--------------~r~ 427 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH--------------PRL 427 (582)
T ss_pred eeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec--------------ccc
Confidence 3666666 6664332 4444542 4578999999999999999999888776644322 356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCC-eeEEe-Ch---h
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNP-HFLIM-QG---R 148 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~-~~l~~-q~---~ 148 (159)
+|++.+|..-+ .+ .+.|.. +.+.. -...|. .++++..-|..+||+. .++ ..||+ |+ +
T Consensus 428 ri~~f~Qhhvd--------~l-~~~v~~-vd~~~---~~~pG~--~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 428 RIKYFAQHHVD--------FL-DKNVNA-VDFME---KSFPGK--TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVA 492 (582)
T ss_pred eecchhHhhhh--------HH-HHHhHH-HHHHH---HhCCCC--CHHHHHHHHHhcCCCchhhhccccccCCcchhHHH
Confidence 78888876311 00 011110 00000 011233 5688999999999986 233 45666 65 7
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
+|.+..++|.
T Consensus 493 fA~~~~~~Ph 502 (582)
T KOG0062|consen 493 FAACTWNNPH 502 (582)
T ss_pred HHHHhcCCCc
Confidence 7777777773
No 495
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.88 E-value=1.4e-05 Score=57.73 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---Ccccchh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG---IQVKQVR 57 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~---~~~g~i~ 57 (159)
+++|.||+||||||+.+.|+.-+. ++.|.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~ 37 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY 37 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHH
Confidence 578999999999999999996555 5677664
No 496
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.88 E-value=1.1e-05 Score=56.36 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~ 47 (159)
|-+++|.||||+|||||+++|.-
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~ 26 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLE 26 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 56789999999999999999853
No 497
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.87 E-value=1.3e-05 Score=59.98 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
..++.|+|++||||||||+.+...+...
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 4678999999999999999998887654
No 498
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.86 E-value=1.1e-05 Score=59.71 Aligned_cols=21 Identities=29% Similarity=0.688 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGI 45 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i 45 (159)
+.+++|+|+||||||||++.+
T Consensus 21 g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred CcEEEEECCCCCchHHHHHHH
Confidence 789999999999999999855
No 499
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.86 E-value=1.3e-05 Score=58.66 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 23 FDREFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 23 ~~~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++.-.++++|++||||||+|++|+|..
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 344568999999999999999999973
No 500
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.85 E-value=2.2e-05 Score=52.32 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.+++|.|+.|||||||.+.++..+..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 678999999999999999999987764
Done!