Query psy17514
Match_columns 159
No_of_seqs 161 out of 2352
Neff 9.7
Searched_HMMs 29240
Date Sat Aug 17 00:31:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 2.8E-31 9.7E-36 201.9 -5.9 142 5-158 4-158 (359)
2 1v43_A Sugar-binding transport 99.9 3.5E-30 1.2E-34 197.1 -2.6 142 1-158 7-161 (372)
3 3rlf_A Maltose/maltodextrin im 99.9 7.1E-31 2.4E-35 201.0 -7.6 138 5-158 3-153 (381)
4 2yyz_A Sugar ABC transporter, 99.9 9.2E-30 3.2E-34 193.9 -5.9 138 5-158 3-153 (359)
5 2it1_A 362AA long hypothetical 99.9 1.8E-29 6.2E-34 192.5 -7.0 138 5-158 3-153 (362)
6 1g29_1 MALK, maltose transport 99.9 1.9E-29 6.4E-34 193.2 -7.6 142 5-158 3-159 (372)
7 1oxx_K GLCV, glucose, ABC tran 99.9 2.3E-29 7.8E-34 191.6 -7.2 142 5-158 3-160 (353)
8 1z47_A CYSA, putative ABC-tran 99.9 3.2E-29 1.1E-33 190.6 -7.2 138 5-158 14-165 (355)
9 3tui_C Methionine import ATP-b 99.9 2E-28 6.9E-33 186.4 -4.8 142 5-158 24-183 (366)
10 3gfo_A Cobalt import ATP-bindi 99.9 4.2E-29 1.4E-33 184.5 -9.3 143 5-158 7-163 (275)
11 2pcj_A ABC transporter, lipopr 99.9 6.2E-28 2.1E-32 173.6 -4.7 142 5-158 4-160 (224)
12 3d31_A Sulfate/molybdate ABC t 99.9 2E-28 7E-33 185.9 -8.2 133 6-158 2-147 (348)
13 2olj_A Amino acid ABC transpor 99.9 1.5E-28 5.1E-33 180.5 -8.7 142 5-158 24-179 (263)
14 1g6h_A High-affinity branched- 99.9 4.5E-28 1.6E-32 177.6 -7.8 143 5-158 7-173 (257)
15 1vpl_A ABC transporter, ATP-bi 99.9 4.5E-28 1.6E-32 177.4 -7.9 141 3-158 13-166 (256)
16 1ji0_A ABC transporter; ATP bi 99.9 1.4E-27 4.8E-32 173.4 -6.1 140 5-158 6-159 (240)
17 4g1u_C Hemin import ATP-bindin 99.9 2E-27 6.9E-32 174.9 -6.0 138 5-158 11-167 (266)
18 1b0u_A Histidine permease; ABC 99.9 2.1E-27 7.4E-32 174.4 -6.3 143 5-158 6-173 (262)
19 3tif_A Uncharacterized ABC tra 99.9 3.8E-27 1.3E-31 170.6 -5.0 143 6-158 2-165 (235)
20 1sgw_A Putative ABC transporte 99.9 1.5E-26 5.2E-31 165.1 -3.3 133 4-158 9-153 (214)
21 2yz2_A Putative ABC transporte 99.9 3E-26 1E-30 168.7 -3.7 136 6-158 3-158 (266)
22 2ihy_A ABC transporter, ATP-bi 99.9 6.2E-26 2.1E-30 167.9 -2.9 146 5-158 21-181 (279)
23 2nq2_C Hypothetical ABC transp 99.9 1.2E-25 4.3E-30 164.3 -1.6 129 5-158 4-148 (253)
24 2onk_A Molybdate/tungstate ABC 99.9 2E-26 6.9E-31 167.2 -7.2 133 6-158 2-146 (240)
25 1mv5_A LMRA, multidrug resista 99.9 4.4E-25 1.5E-29 160.5 -2.3 133 6-158 2-159 (243)
26 3gd7_A Fusion complex of cysti 99.9 3.3E-25 1.1E-29 170.5 -3.9 131 5-158 19-175 (390)
27 2ff7_A Alpha-hemolysin translo 99.9 3.5E-25 1.2E-29 161.4 -4.3 133 5-158 7-165 (247)
28 3kta_A Chromosome segregation 99.9 1.5E-21 5E-26 135.7 14.0 153 1-158 2-157 (182)
29 2d2e_A SUFC protein; ABC-ATPas 99.9 1.8E-26 6.1E-31 168.5 -11.8 143 5-158 3-163 (250)
30 3nh6_A ATP-binding cassette SU 99.9 7.7E-25 2.6E-29 163.7 -5.3 133 5-158 53-210 (306)
31 2ixe_A Antigen peptide transpo 99.9 9.6E-25 3.3E-29 161.0 -5.7 138 5-158 16-176 (271)
32 2qi9_C Vitamin B12 import ATP- 99.9 5.9E-25 2E-29 160.3 -6.9 130 5-158 4-146 (249)
33 2cbz_A Multidrug resistance-as 99.9 1.1E-23 3.7E-28 152.7 -0.3 122 5-158 3-147 (237)
34 2zu0_C Probable ATP-dependent 99.9 3.8E-25 1.3E-29 162.9 -8.8 143 5-158 20-184 (267)
35 2pze_A Cystic fibrosis transme 99.9 4.4E-23 1.5E-27 148.8 0.7 120 4-158 5-150 (229)
36 3b5x_A Lipid A export ATP-bind 99.9 9.1E-23 3.1E-27 164.5 1.8 134 5-158 341-500 (582)
37 2pjz_A Hypothetical protein ST 99.8 3.4E-24 1.2E-28 157.3 -6.4 129 6-158 2-148 (263)
38 2ghi_A Transport protein; mult 99.8 1.1E-23 3.8E-28 154.5 -3.7 132 5-158 17-175 (260)
39 3b60_A Lipid A export ATP-bind 99.8 1.3E-22 4.4E-27 163.7 -5.2 134 5-158 341-500 (582)
40 2yl4_A ATP-binding cassette SU 99.8 1.8E-22 6.3E-27 163.1 -4.6 135 6-158 342-503 (595)
41 3qf4_A ABC transporter, ATP-bi 99.8 4.1E-22 1.4E-26 160.8 -3.9 133 5-158 341-499 (587)
42 4a82_A Cystic fibrosis transme 99.8 1.9E-22 6.6E-27 162.5 -6.5 133 5-158 339-497 (578)
43 3qf4_B Uncharacterized ABC tra 99.8 2.1E-22 7.2E-27 162.8 -7.6 133 5-158 354-511 (598)
44 2bbs_A Cystic fibrosis transme 99.8 1.5E-20 5.1E-25 139.7 -0.8 116 5-158 40-179 (290)
45 4f4c_A Multidrug resistance pr 99.8 9.2E-21 3.2E-25 164.2 -4.5 135 5-158 1076-1237(1321)
46 1w1w_A Structural maintenance 99.7 1.8E-17 6E-22 129.3 12.3 147 1-159 2-164 (430)
47 1e69_A Chromosome segregation 99.7 2.7E-17 9.4E-22 123.9 12.7 146 1-159 1-149 (322)
48 4f4c_A Multidrug resistance pr 99.7 8.9E-20 3E-24 158.1 -3.3 133 5-158 415-574 (1321)
49 3g5u_A MCG1178, multidrug resi 99.7 3.7E-20 1.3E-24 160.1 -6.0 133 5-158 387-546 (1284)
50 3bk7_A ABC transporter ATP-bin 99.7 8.1E-19 2.8E-23 141.8 0.2 122 5-158 357-491 (607)
51 3g5u_A MCG1178, multidrug resi 99.7 1.7E-19 5.8E-24 156.0 -4.4 135 5-158 1030-1191(1284)
52 1yqt_A RNAse L inhibitor; ATP- 99.7 1.6E-18 5.6E-23 138.5 -0.5 122 5-158 287-421 (538)
53 3ozx_A RNAse L inhibitor; ATP 99.7 3.6E-18 1.2E-22 136.4 0.2 124 5-158 269-405 (538)
54 3bk7_A ABC transporter ATP-bin 99.7 9.5E-19 3.3E-23 141.4 -3.2 132 9-158 95-248 (607)
55 1yqt_A RNAse L inhibitor; ATP- 99.7 2.9E-18 9.8E-23 137.1 -2.2 134 7-158 22-178 (538)
56 1f2t_A RAD50 ABC-ATPase; DNA d 99.6 8.5E-16 2.9E-20 103.7 8.0 134 1-154 1-148 (149)
57 2iw3_A Elongation factor 3A; a 99.6 4.1E-17 1.4E-21 136.9 1.7 56 5-60 671-734 (986)
58 3qks_A DNA double-strand break 99.6 9.5E-15 3.2E-19 103.3 11.1 137 1-155 1-149 (203)
59 3j16_B RLI1P; ribosome recycli 99.5 7.5E-16 2.6E-20 124.5 -1.0 102 26-158 379-487 (608)
60 2iw3_A Elongation factor 3A; a 99.5 3.2E-15 1.1E-19 125.6 1.3 120 5-158 435-568 (986)
61 3j16_B RLI1P; ribosome recycli 99.5 7.1E-16 2.4E-20 124.6 -2.9 47 10-56 82-134 (608)
62 3auy_A DNA double-strand break 99.5 4.2E-14 1.4E-18 108.4 6.2 137 2-158 4-146 (371)
63 3ozx_A RNAse L inhibitor; ATP 99.5 1.2E-15 4.1E-20 121.9 -3.1 32 25-56 25-56 (538)
64 3ux8_A Excinuclease ABC, A sub 99.5 1.7E-15 5.9E-20 123.9 -2.8 134 17-158 31-222 (670)
65 3sop_A Neuronal-specific septi 99.5 2.6E-14 9E-19 105.2 3.3 68 28-110 5-72 (270)
66 1qhl_A Protein (cell division 99.4 7.1E-15 2.4E-19 105.5 -0.7 80 1-84 5-91 (227)
67 1htw_A HI0065; nucleotide-bind 99.4 9.4E-15 3.2E-19 99.4 -1.5 84 6-108 8-97 (158)
68 3qkt_A DNA double-strand break 99.4 3.2E-13 1.1E-17 102.3 6.4 78 1-85 1-78 (339)
69 4aby_A DNA repair protein RECN 99.4 1.1E-12 3.6E-17 101.6 8.9 109 1-132 38-147 (415)
70 4ad8_A DNA repair protein RECN 99.4 7.4E-13 2.5E-17 105.5 8.0 110 1-133 38-148 (517)
71 1tq4_A IIGP1, interferon-induc 99.4 2.9E-13 9.8E-18 104.9 3.7 96 27-155 71-173 (413)
72 2npi_A Protein CLP1; CLP1-PCF1 99.3 3.2E-16 1.1E-20 123.0 -14.1 111 25-158 138-257 (460)
73 3b85_A Phosphate starvation-in 99.3 5.3E-14 1.8E-18 99.8 -1.7 112 12-158 8-124 (208)
74 3aez_A Pantothenate kinase; tr 99.3 3.7E-14 1.3E-18 106.4 -3.0 101 25-158 90-196 (312)
75 1u0l_A Probable GTPase ENGC; p 99.3 8.1E-14 2.8E-18 104.0 -1.2 103 25-136 169-281 (301)
76 2o5v_A DNA replication and rep 99.3 9.4E-12 3.2E-16 94.9 8.9 75 1-84 4-78 (359)
77 1s96_A Guanylate kinase, GMP k 99.2 3.1E-13 1.1E-17 96.5 -1.6 72 24-111 15-92 (219)
78 2qag_B Septin-6, protein NEDD5 99.2 3.8E-12 1.3E-16 98.7 3.5 84 6-110 17-107 (427)
79 2yv5_A YJEQ protein; hydrolase 99.2 9.4E-13 3.2E-17 98.3 -1.1 111 25-145 165-290 (302)
80 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 1.2E-11 4.2E-16 94.5 4.7 49 1-51 1-49 (365)
81 2qnr_A Septin-2, protein NEDD5 99.2 1.2E-11 4E-16 92.3 3.4 84 9-109 2-87 (301)
82 2qag_C Septin-7; cell cycle, c 99.2 1E-11 3.5E-16 96.4 3.1 87 5-110 11-100 (418)
83 3euj_A Chromosome partition pr 99.2 2.4E-11 8.2E-16 95.6 5.2 36 25-60 29-64 (483)
84 2dpy_A FLII, flagellum-specifi 99.1 4E-12 1.4E-16 99.3 -0.6 80 6-85 132-222 (438)
85 2rcn_A Probable GTPase ENGC; Y 99.1 6.5E-13 2.2E-17 101.0 -5.1 107 25-154 215-329 (358)
86 1znw_A Guanylate kinase, GMP k 99.1 1.6E-11 5.3E-16 86.7 1.7 54 25-85 20-73 (207)
87 2i3b_A HCR-ntpase, human cance 99.1 3.3E-11 1.1E-15 84.1 2.1 54 25-85 1-54 (189)
88 2v9p_A Replication protein E1; 99.1 5.8E-12 2E-16 94.0 -2.3 49 6-58 102-156 (305)
89 3ux8_A Excinuclease ABC, A sub 99.0 5.2E-12 1.8E-16 103.4 -3.7 29 18-46 336-369 (670)
90 1z6g_A Guanylate kinase; struc 99.0 1.1E-10 3.7E-15 83.2 3.4 55 25-85 23-77 (218)
91 3szr_A Interferon-induced GTP- 99.0 1.7E-12 5.8E-17 105.2 -6.8 80 5-85 10-106 (608)
92 2obl_A ESCN; ATPase, hydrolase 99.0 4.4E-11 1.5E-15 90.8 0.5 55 6-60 46-106 (347)
93 2jeo_A Uridine-cytidine kinase 99.0 3.5E-10 1.2E-14 81.8 3.7 53 15-84 10-67 (245)
94 2qm8_A GTPase/ATPase; G protei 98.9 1.5E-11 5.2E-16 93.1 -3.9 55 6-60 30-90 (337)
95 2eyu_A Twitching motility prot 98.9 1.8E-10 6.2E-15 84.2 1.8 42 19-60 16-61 (261)
96 4gp7_A Metallophosphoesterase; 98.9 6.6E-10 2.3E-14 76.1 4.4 36 25-60 9-56 (171)
97 3a00_A Guanylate kinase, GMP k 98.9 7.8E-10 2.7E-14 76.7 3.7 26 25-50 1-26 (186)
98 3b9q_A Chloroplast SRP recepto 98.9 4E-10 1.4E-14 84.1 2.3 75 25-108 100-178 (302)
99 1rj9_A FTSY, signal recognitio 98.9 5.7E-10 2E-14 83.3 3.2 37 24-60 101-137 (304)
100 1tf7_A KAIC; homohexamer, hexa 98.9 3E-10 1E-14 90.6 1.4 55 6-60 13-76 (525)
101 2pt7_A CAG-ALFA; ATPase, prote 98.9 5.2E-10 1.8E-14 84.4 2.1 36 25-60 171-206 (330)
102 1pui_A ENGB, probable GTP-bind 98.9 2.3E-10 7.7E-15 80.3 -0.5 52 5-57 3-63 (210)
103 3c8u_A Fructokinase; YP_612366 98.9 1E-09 3.6E-14 77.3 2.9 36 25-60 22-60 (208)
104 1sq5_A Pantothenate kinase; P- 98.8 1.5E-09 5.2E-14 81.1 3.8 34 25-58 80-115 (308)
105 1lvg_A Guanylate kinase, GMP k 98.8 2.1E-09 7E-14 75.4 4.0 26 25-50 4-29 (198)
106 1t9h_A YLOQ, probable GTPase E 98.8 7.1E-10 2.4E-14 82.8 1.6 103 25-137 173-287 (307)
107 2og2_A Putative signal recogni 98.8 1.1E-09 3.7E-14 83.5 2.3 75 25-108 157-235 (359)
108 2gza_A Type IV secretion syste 98.8 1.2E-09 4.2E-14 83.3 2.6 73 25-109 175-248 (361)
109 1zp6_A Hypothetical protein AT 98.8 1.5E-09 5.1E-14 75.2 2.8 37 25-64 9-45 (191)
110 3e70_C DPA, signal recognition 98.8 1.3E-09 4.4E-14 82.2 2.2 36 25-60 129-164 (328)
111 3tr0_A Guanylate kinase, GMP k 98.8 2.9E-09 9.8E-14 74.5 3.8 26 25-50 7-32 (205)
112 2ehv_A Hypothetical protein PH 98.8 2E-09 7E-14 77.3 2.7 54 5-58 6-65 (251)
113 1lw7_A Transcriptional regulat 98.8 2.9E-09 1E-13 81.2 3.6 35 25-59 170-208 (365)
114 4a74_A DNA repair and recombin 98.8 3.1E-09 1.1E-13 75.4 3.3 27 25-51 25-51 (231)
115 2ewv_A Twitching motility prot 98.8 1.3E-09 4.3E-14 83.6 1.2 52 25-83 136-188 (372)
116 2bbw_A Adenylate kinase 4, AK4 98.8 1.9E-09 6.4E-14 77.9 2.0 36 25-60 27-65 (246)
117 1ye8_A Protein THEP1, hypothet 98.8 4.6E-09 1.6E-13 72.5 3.6 51 27-85 2-52 (178)
118 2yhs_A FTSY, cell division pro 98.8 2.4E-09 8.3E-14 84.3 2.3 60 25-85 293-356 (503)
119 1p9r_A General secretion pathw 98.7 4.1E-09 1.4E-13 81.8 3.3 36 25-60 167-202 (418)
120 3lnc_A Guanylate kinase, GMP k 98.7 3.5E-09 1.2E-13 75.7 2.7 25 25-49 27-52 (231)
121 2f1r_A Molybdopterin-guanine d 98.7 2.7E-09 9.2E-14 73.3 1.2 35 26-60 3-40 (171)
122 3uie_A Adenylyl-sulfate kinase 98.7 2.8E-09 9.5E-14 74.6 1.3 35 25-60 25-61 (200)
123 3asz_A Uridine kinase; cytidin 98.7 7.3E-09 2.5E-13 72.8 3.4 27 25-51 6-32 (211)
124 1kgd_A CASK, peripheral plasma 98.7 1.1E-08 3.6E-13 70.6 4.0 29 23-51 3-31 (180)
125 2bdt_A BH3686; alpha-beta prot 98.7 8.2E-09 2.8E-13 71.4 2.7 33 25-60 2-34 (189)
126 2oap_1 GSPE-2, type II secreti 98.6 1.1E-08 3.7E-13 81.4 2.5 36 25-60 260-295 (511)
127 4eun_A Thermoresistant glucoki 98.6 2.2E-08 7.5E-13 70.0 3.5 25 25-49 29-53 (200)
128 1nij_A Hypothetical protein YJ 98.6 1.3E-08 4.5E-13 76.3 2.3 35 26-60 5-47 (318)
129 3jvv_A Twitching mobility prot 98.6 1.6E-08 5.3E-13 77.0 2.4 33 25-57 123-156 (356)
130 4e22_A Cytidylate kinase; P-lo 98.6 1.4E-08 4.9E-13 73.6 1.7 33 25-57 27-62 (252)
131 2j41_A Guanylate kinase; GMP, 98.6 3.7E-08 1.3E-12 68.8 3.6 30 25-54 6-35 (207)
132 1ewq_A DNA mismatch repair pro 98.6 2.7E-08 9.2E-13 82.4 3.1 40 17-56 566-608 (765)
133 3pih_A Uvrabc system protein A 98.5 2.6E-08 8.8E-13 83.8 2.5 34 124-157 783-824 (916)
134 2o8b_B DNA mismatch repair pro 98.5 4.8E-08 1.7E-12 83.2 4.1 45 5-50 750-813 (1022)
135 1in4_A RUVB, holliday junction 98.5 6.5E-09 2.2E-13 78.4 -1.4 76 6-84 19-111 (334)
136 1cr0_A DNA primase/helicase; R 98.5 4E-08 1.4E-12 72.7 2.6 32 25-56 35-67 (296)
137 3ney_A 55 kDa erythrocyte memb 98.5 9.6E-08 3.3E-12 66.9 4.4 31 20-50 14-44 (197)
138 3tau_A Guanylate kinase, GMP k 98.5 7.3E-08 2.5E-12 67.8 3.6 27 25-51 8-34 (208)
139 2w0m_A SSO2452; RECA, SSPF, un 98.5 4.9E-08 1.7E-12 69.1 2.3 34 25-58 23-56 (235)
140 1rz3_A Hypothetical protein rb 98.5 5.3E-08 1.8E-12 68.2 2.2 32 25-56 22-53 (201)
141 3ec2_A DNA replication protein 98.5 5.7E-08 2E-12 66.7 2.3 30 25-54 38-67 (180)
142 1kag_A SKI, shikimate kinase I 98.4 1.3E-07 4.5E-12 64.2 3.9 27 25-51 4-30 (173)
143 2kjq_A DNAA-related protein; s 98.4 7.9E-08 2.7E-12 64.4 2.4 32 20-51 31-62 (149)
144 3nwj_A ATSK2; P loop, shikimat 98.4 7.5E-08 2.6E-12 69.9 1.7 47 5-51 17-74 (250)
145 3tqc_A Pantothenate kinase; bi 98.4 1.9E-07 6.5E-12 70.1 3.9 24 27-50 94-117 (321)
146 3cr8_A Sulfate adenylyltranfer 98.4 1.2E-07 4.3E-12 75.9 3.1 36 25-60 369-406 (552)
147 1oix_A RAS-related protein RAB 98.4 1.4E-07 4.6E-12 65.4 2.5 25 27-51 31-55 (191)
148 1knq_A Gluconate kinase; ALFA/ 98.4 1.9E-07 6.4E-12 63.7 3.1 26 25-50 8-33 (175)
149 1wb9_A DNA mismatch repair pro 98.4 1.8E-07 6.1E-12 78.0 3.5 33 17-49 595-631 (800)
150 2vp4_A Deoxynucleoside kinase; 98.4 7.7E-08 2.6E-12 68.8 1.0 24 25-48 20-43 (230)
151 3thx_B DNA mismatch repair pro 98.3 1.8E-07 6.1E-12 78.9 2.9 33 17-49 660-697 (918)
152 1n0w_A DNA repair protein RAD5 98.3 2.7E-07 9.3E-12 65.8 3.1 35 25-59 24-65 (243)
153 1cke_A CK, MSSA, protein (cyti 98.3 2.6E-07 9E-12 65.4 2.7 33 26-58 6-41 (227)
154 2x8a_A Nuclear valosin-contain 98.3 3.2E-07 1.1E-11 67.3 3.2 31 28-60 47-77 (274)
155 1iy2_A ATP-dependent metallopr 98.3 9.4E-08 3.2E-12 70.1 0.1 31 28-60 76-106 (278)
156 1pzn_A RAD51, DNA repair and r 98.3 4.5E-07 1.5E-11 68.8 3.1 36 25-60 131-173 (349)
157 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 4.5E-07 1.5E-11 69.8 2.8 36 25-60 20-67 (392)
158 3thx_A DNA mismatch repair pro 98.2 5.6E-07 1.9E-11 76.0 3.2 23 25-47 662-684 (934)
159 1vma_A Cell division protein F 98.2 5.4E-07 1.9E-11 67.2 2.3 34 25-58 104-137 (306)
160 2px0_A Flagellar biosynthesis 98.2 8.4E-07 2.9E-11 65.9 3.2 30 25-54 105-134 (296)
161 2vf7_A UVRA2, excinuclease ABC 98.2 3.6E-07 1.2E-11 76.4 0.9 42 5-50 502-549 (842)
162 3vaa_A Shikimate kinase, SK; s 98.1 1.6E-06 5.4E-11 60.4 4.0 33 19-51 14-51 (199)
163 1sxj_E Activator 1 40 kDa subu 98.1 1.1E-06 3.6E-11 66.3 3.3 33 28-60 39-72 (354)
164 1ixz_A ATP-dependent metallopr 98.1 1.7E-06 5.9E-11 62.3 4.0 46 13-60 34-82 (254)
165 2f9l_A RAB11B, member RAS onco 98.1 1.5E-06 5E-11 60.3 3.2 23 28-50 8-30 (199)
166 2www_A Methylmalonic aciduria 98.1 1.1E-06 3.8E-11 66.7 2.6 32 25-56 74-105 (349)
167 1nlf_A Regulatory protein REPA 98.1 2.4E-06 8.2E-11 62.6 3.8 26 25-50 30-55 (279)
168 1jjv_A Dephospho-COA kinase; P 98.0 2.1E-06 7.3E-11 59.9 2.9 21 27-47 4-24 (206)
169 2if2_A Dephospho-COA kinase; a 98.0 3.1E-06 1.1E-10 58.9 3.3 21 27-47 3-23 (204)
170 2cvh_A DNA repair and recombin 98.0 3.6E-06 1.2E-10 59.0 3.6 23 25-47 20-42 (220)
171 2ygr_A Uvrabc system protein A 98.0 1.9E-06 6.5E-11 72.9 2.4 36 6-45 648-688 (993)
172 1ls1_A Signal recognition part 98.0 2E-06 6.8E-11 63.8 2.2 35 24-58 97-131 (295)
173 3m6a_A ATP-dependent protease 98.0 3.3E-06 1.1E-10 67.6 3.4 36 25-60 108-143 (543)
174 1svm_A Large T antigen; AAA+ f 98.0 4.6E-06 1.6E-10 63.9 4.1 26 25-50 169-194 (377)
175 3lda_A DNA repair protein RAD5 98.0 2.7E-06 9.1E-11 65.7 2.6 28 25-52 178-207 (400)
176 2pez_A Bifunctional 3'-phospho 98.0 4.5E-06 1.6E-10 57.0 3.5 26 25-50 5-30 (179)
177 1tf7_A KAIC; homohexamer, hexa 98.0 3.8E-06 1.3E-10 67.0 3.5 28 25-52 281-308 (525)
178 2qt1_A Nicotinamide riboside k 98.0 2.9E-06 1E-10 59.3 2.5 25 25-49 21-45 (207)
179 1zu4_A FTSY; GTPase, signal re 98.0 3E-06 1E-10 63.6 2.5 35 25-59 105-139 (320)
180 2qor_A Guanylate kinase; phosp 97.9 5.7E-06 2E-10 57.8 3.7 27 24-50 11-37 (204)
181 2r6f_A Excinuclease ABC subuni 97.9 2.1E-06 7.1E-11 72.5 1.5 38 5-46 629-671 (972)
182 1m7g_A Adenylylsulfate kinase; 97.9 3.4E-06 1.2E-10 59.2 2.4 30 25-54 25-54 (211)
183 3t61_A Gluconokinase; PSI-biol 97.9 6.1E-06 2.1E-10 57.4 3.6 26 25-50 18-43 (202)
184 1odf_A YGR205W, hypothetical 3 97.9 4.1E-06 1.4E-10 62.0 2.6 27 25-51 31-57 (290)
185 1udx_A The GTP-binding protein 97.9 1.7E-06 6E-11 67.0 0.4 25 25-49 157-181 (416)
186 2p67_A LAO/AO transport system 97.9 5.8E-06 2E-10 62.4 2.7 29 25-53 56-84 (341)
187 2yvu_A Probable adenylyl-sulfa 97.9 6.1E-06 2.1E-10 56.7 2.5 31 25-55 13-43 (186)
188 3k1j_A LON protease, ATP-depen 97.8 2.9E-06 1E-10 68.7 0.6 29 25-53 60-88 (604)
189 1np6_A Molybdopterin-guanine d 97.8 1.3E-05 4.3E-10 55.0 3.7 25 26-50 7-31 (174)
190 2wji_A Ferrous iron transport 97.8 7.9E-06 2.7E-10 54.9 2.4 23 27-49 5-27 (165)
191 1sxj_C Activator 1 40 kDa subu 97.8 3.3E-06 1.1E-10 63.5 0.4 28 25-52 44-73 (340)
192 3kb2_A SPBC2 prophage-derived 97.8 1.5E-05 5.1E-10 53.7 3.6 25 27-51 3-27 (173)
193 2qag_A Septin-2, protein NEDD5 97.8 1.7E-06 5.7E-11 65.9 -1.6 44 5-49 17-61 (361)
194 1ex7_A Guanylate kinase; subst 97.8 1.4E-05 4.8E-10 55.4 3.0 22 27-48 3-24 (186)
195 2wjg_A FEOB, ferrous iron tran 97.7 1.4E-05 4.8E-10 54.5 2.7 22 27-48 9-30 (188)
196 2gj8_A MNME, tRNA modification 97.7 1.5E-05 5E-10 54.0 2.7 24 26-49 5-28 (172)
197 1ega_A Protein (GTP-binding pr 97.7 1.5E-05 5.2E-10 59.1 2.8 25 25-49 8-32 (301)
198 2dr3_A UPF0273 protein PH0284; 97.7 1.8E-05 6E-10 56.4 2.8 25 25-49 23-48 (247)
199 4eaq_A DTMP kinase, thymidylat 97.7 2.6E-05 9E-10 55.6 3.7 27 25-51 26-52 (229)
200 1mky_A Probable GTP-binding pr 97.7 1.4E-05 4.8E-10 62.3 2.4 24 27-50 182-205 (439)
201 2qtf_A Protein HFLX, GTP-bindi 97.7 1.2E-05 4.3E-10 61.2 2.0 23 27-49 181-203 (364)
202 1qhx_A CPT, protein (chloramph 97.7 3.6E-05 1.2E-09 52.2 3.8 26 25-50 3-28 (178)
203 3t34_A Dynamin-related protein 97.7 2.5E-05 8.6E-10 59.2 3.3 37 18-54 25-65 (360)
204 2zej_A Dardarin, leucine-rich 97.7 1.5E-05 5.2E-10 54.4 1.9 21 28-48 5-25 (184)
205 1q3t_A Cytidylate kinase; nucl 97.6 3.9E-05 1.3E-09 54.7 4.0 26 25-50 16-41 (236)
206 2ze6_A Isopentenyl transferase 97.6 3.4E-05 1.2E-09 55.8 3.7 24 27-50 3-26 (253)
207 1via_A Shikimate kinase; struc 97.6 3.6E-05 1.2E-09 52.2 3.6 24 27-50 6-29 (175)
208 2jaq_A Deoxyguanosine kinase; 97.6 4E-05 1.4E-09 52.9 3.7 23 27-49 2-24 (205)
209 3lw7_A Adenylate kinase relate 97.6 3.1E-05 1.1E-09 52.0 3.0 19 27-45 3-21 (179)
210 1lv7_A FTSH; alpha/beta domain 97.6 3.8E-05 1.3E-09 55.3 3.5 24 27-50 47-70 (257)
211 1gtv_A TMK, thymidylate kinase 97.6 1.9E-05 6.5E-10 55.1 1.8 24 27-50 2-25 (214)
212 1xjc_A MOBB protein homolog; s 97.6 4.6E-05 1.6E-09 51.9 3.6 25 26-50 5-29 (169)
213 3hr8_A Protein RECA; alpha and 97.6 2.6E-05 8.9E-10 59.3 2.5 31 25-55 61-91 (356)
214 3cm0_A Adenylate kinase; ATP-b 97.6 3.7E-05 1.3E-09 52.5 3.1 25 25-49 4-28 (186)
215 2ffh_A Protein (FFH); SRP54, s 97.6 3.1E-05 1.1E-09 60.2 2.9 35 24-58 97-131 (425)
216 3lxx_A GTPase IMAP family memb 97.6 3.3E-05 1.1E-09 55.1 2.7 25 27-51 31-55 (239)
217 3r20_A Cytidylate kinase; stru 97.6 5.3E-05 1.8E-09 54.2 3.7 25 26-50 10-34 (233)
218 1j8m_F SRP54, signal recogniti 97.6 2.5E-05 8.4E-10 58.0 1.9 32 25-56 98-129 (297)
219 1vht_A Dephospho-COA kinase; s 97.5 4.7E-05 1.6E-09 53.5 3.2 22 26-47 5-26 (218)
220 1ly1_A Polynucleotide kinase; 97.5 5.2E-05 1.8E-09 51.3 3.2 21 27-47 4-24 (181)
221 1kht_A Adenylate kinase; phosp 97.5 5.9E-05 2E-09 51.5 3.4 26 25-50 3-28 (192)
222 2ohf_A Protein OLA1, GTP-bindi 97.5 3.2E-05 1.1E-09 59.5 2.2 24 25-48 22-45 (396)
223 3k53_A Ferrous iron transport 97.5 4.2E-05 1.4E-09 55.7 2.6 24 27-50 5-28 (271)
224 2p5t_B PEZT; postsegregational 97.5 4.5E-05 1.5E-09 55.1 2.5 26 25-50 32-57 (253)
225 3ake_A Cytidylate kinase; CMP 97.5 8.8E-05 3E-09 51.4 3.7 24 27-50 4-27 (208)
226 2rhm_A Putative kinase; P-loop 97.5 7.1E-05 2.4E-09 51.3 3.2 26 25-50 5-30 (193)
227 1nks_A Adenylate kinase; therm 97.5 7.3E-05 2.5E-09 51.1 3.1 24 27-50 3-26 (194)
228 3iij_A Coilin-interacting nucl 97.4 8.3E-05 2.8E-09 50.6 3.3 26 25-50 11-36 (180)
229 1gvn_B Zeta; postsegregational 97.4 6.4E-05 2.2E-09 55.4 2.8 25 25-49 33-57 (287)
230 1y63_A LMAJ004144AAA protein; 97.4 8.9E-05 3E-09 50.8 3.4 24 25-48 10-33 (184)
231 4ag6_A VIRB4 ATPase, type IV s 97.4 6.6E-05 2.3E-09 57.5 2.9 34 25-58 35-68 (392)
232 1uf9_A TT1252 protein; P-loop, 97.4 8.2E-05 2.8E-09 51.4 3.1 24 25-48 8-31 (203)
233 3trf_A Shikimate kinase, SK; a 97.4 0.00013 4.4E-09 49.8 4.0 26 25-50 5-30 (185)
234 3kl4_A SRP54, signal recogniti 97.4 4.7E-05 1.6E-09 59.3 1.9 32 25-56 97-128 (433)
235 2ged_A SR-beta, signal recogni 97.4 9.3E-05 3.2E-09 50.5 3.2 23 27-49 50-72 (193)
236 2dhr_A FTSH; AAA+ protein, hex 97.4 9.1E-05 3.1E-09 58.7 3.5 23 28-50 67-89 (499)
237 2z0h_A DTMP kinase, thymidylat 97.4 9.9E-05 3.4E-09 50.7 3.2 23 27-49 2-24 (197)
238 1z2a_A RAS-related protein RAB 97.3 0.00013 4.4E-09 48.4 3.2 21 28-48 8-28 (168)
239 2w58_A DNAI, primosome compone 97.3 0.00011 3.8E-09 50.8 3.0 27 26-52 55-81 (202)
240 4fcw_A Chaperone protein CLPB; 97.3 0.00014 4.6E-09 53.6 3.4 29 26-54 48-76 (311)
241 2ce2_X GTPase HRAS; signaling 97.3 0.00014 4.7E-09 48.0 3.2 22 28-49 6-27 (166)
242 2v54_A DTMP kinase, thymidylat 97.3 0.00015 5E-09 50.1 3.4 25 25-49 4-28 (204)
243 2dyk_A GTP-binding protein; GT 97.3 0.00014 4.9E-09 47.9 3.2 21 28-48 4-24 (161)
244 1kao_A RAP2A; GTP-binding prot 97.3 0.00015 5.1E-09 47.9 3.2 21 28-48 6-26 (167)
245 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00017 5.7E-09 54.8 3.7 26 25-50 22-49 (359)
246 1g16_A RAS-related protein SEC 97.3 0.00015 5.3E-09 48.1 3.2 21 28-48 6-26 (170)
247 1z08_A RAS-related protein RAB 97.3 0.00016 5.3E-09 48.1 3.2 22 28-49 9-30 (170)
248 1m2o_B GTP-binding protein SAR 97.3 0.00015 5.2E-09 49.7 3.2 21 27-47 25-45 (190)
249 1u8z_A RAS-related protein RAL 97.3 0.00016 5.4E-09 47.8 3.2 21 28-48 7-27 (168)
250 1z0j_A RAB-22, RAS-related pro 97.3 0.00016 5.4E-09 48.1 3.2 22 28-49 9-30 (170)
251 1ek0_A Protein (GTP-binding pr 97.3 0.00016 5.6E-09 47.9 3.2 22 28-49 6-27 (170)
252 1tev_A UMP-CMP kinase; ploop, 97.3 0.00016 5.4E-09 49.5 3.2 25 26-50 4-28 (196)
253 1ky3_A GTP-binding protein YPT 97.3 0.00016 5.5E-09 48.6 3.2 22 28-49 11-32 (182)
254 3b1v_A Ferrous iron uptake tra 97.3 0.00011 3.7E-09 53.8 2.4 22 27-48 5-26 (272)
255 2plr_A DTMP kinase, probable t 97.3 0.00021 7.1E-09 49.5 3.8 26 26-51 5-30 (213)
256 3cf0_A Transitional endoplasmi 97.3 0.0002 7E-09 52.9 3.9 26 25-50 49-74 (301)
257 2c95_A Adenylate kinase 1; tra 97.3 0.0002 7E-09 49.0 3.7 26 25-50 9-34 (196)
258 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00017 5.8E-09 48.4 3.2 21 28-48 10-30 (177)
259 1c1y_A RAS-related protein RAP 97.3 0.00017 6E-09 47.7 3.2 21 28-48 6-26 (167)
260 2wwf_A Thymidilate kinase, put 97.3 0.00018 6.2E-09 50.0 3.4 24 25-48 10-33 (212)
261 2fn4_A P23, RAS-related protei 97.3 0.00017 5.9E-09 48.4 3.2 21 28-48 12-32 (181)
262 1e6c_A Shikimate kinase; phosp 97.3 0.00021 7.1E-09 48.0 3.5 24 27-50 4-27 (173)
263 2dy1_A Elongation factor G; tr 97.3 0.00022 7.5E-09 58.5 4.2 32 25-56 9-42 (665)
264 1fnn_A CDC6P, cell division co 97.3 0.00024 8.1E-09 53.8 4.1 26 27-52 46-71 (389)
265 2erx_A GTP-binding protein DI- 97.2 0.00015 5.2E-09 48.2 2.7 20 28-47 6-25 (172)
266 2nzj_A GTP-binding protein REM 97.2 0.00014 4.6E-09 48.7 2.4 21 28-48 7-27 (175)
267 2pbr_A DTMP kinase, thymidylat 97.2 0.00019 6.6E-09 49.0 3.2 23 27-49 2-24 (195)
268 2oil_A CATX-8, RAS-related pro 97.2 0.0002 6.7E-09 48.9 3.2 22 28-49 28-49 (193)
269 1r2q_A RAS-related protein RAB 97.2 0.00021 7E-09 47.4 3.2 21 28-48 9-29 (170)
270 3lxw_A GTPase IMAP family memb 97.2 0.00015 5.2E-09 52.1 2.7 23 27-49 23-45 (247)
271 3fb4_A Adenylate kinase; psych 97.2 0.0002 6.7E-09 50.1 3.2 24 27-50 2-25 (216)
272 1upt_A ARL1, ADP-ribosylation 97.2 0.00021 7.3E-09 47.5 3.2 21 28-48 10-30 (171)
273 1fzq_A ADP-ribosylation factor 97.2 0.00018 6.1E-09 48.9 2.8 22 27-48 18-39 (181)
274 1svi_A GTP-binding protein YSX 97.2 0.00016 5.4E-09 49.4 2.6 23 26-48 24-46 (195)
275 1nn5_A Similar to deoxythymidy 97.2 0.00023 7.8E-09 49.5 3.4 24 25-48 9-32 (215)
276 3bc1_A RAS-related protein RAB 97.2 0.00021 7.3E-09 48.4 3.2 21 28-48 14-34 (195)
277 1ypw_A Transitional endoplasmi 97.2 0.00017 5.7E-09 60.4 3.1 28 25-52 238-265 (806)
278 4dsu_A GTPase KRAS, isoform 2B 97.2 0.00021 7.3E-09 48.3 3.2 22 28-49 7-28 (189)
279 3pqc_A Probable GTP-binding pr 97.2 0.00016 5.5E-09 49.2 2.6 23 27-49 25-47 (195)
280 2bwj_A Adenylate kinase 5; pho 97.2 0.00026 9E-09 48.6 3.7 26 25-50 12-37 (199)
281 2lkc_A Translation initiation 97.2 0.00017 6E-09 48.3 2.7 23 26-48 9-31 (178)
282 1zd8_A GTP:AMP phosphotransfer 97.2 0.00021 7E-09 50.5 3.1 25 25-49 7-31 (227)
283 2y8e_A RAB-protein 6, GH09086P 97.2 0.00022 7.6E-09 47.7 3.2 21 28-48 17-37 (179)
284 3bos_A Putative DNA replicatio 97.2 0.00029 9.8E-09 49.6 3.9 26 25-50 52-77 (242)
285 3clv_A RAB5 protein, putative; 97.2 0.00022 7.6E-09 48.7 3.2 22 28-49 10-31 (208)
286 1zak_A Adenylate kinase; ATP:A 97.2 0.00025 8.7E-09 49.9 3.5 25 26-50 6-30 (222)
287 1qf9_A UMP/CMP kinase, protein 97.2 0.00028 9.6E-09 48.1 3.7 25 26-50 7-31 (194)
288 3t1o_A Gliding protein MGLA; G 97.2 0.00023 7.8E-09 48.5 3.2 23 28-50 17-39 (198)
289 2zr9_A Protein RECA, recombina 97.2 0.00018 6.2E-09 54.5 2.9 25 25-49 61-85 (349)
290 3q85_A GTP-binding protein REM 97.2 0.00017 5.7E-09 48.0 2.4 20 28-47 5-24 (169)
291 1r8s_A ADP-ribosylation factor 97.2 0.00024 8.2E-09 47.0 3.2 22 28-49 3-24 (164)
292 2qby_A CDC6 homolog 1, cell di 97.2 0.00025 8.5E-09 53.4 3.7 26 25-50 45-70 (386)
293 3con_A GTPase NRAS; structural 97.2 0.00025 8.4E-09 48.3 3.2 22 27-48 23-44 (190)
294 2a9k_A RAS-related protein RAL 97.2 0.00025 8.5E-09 47.8 3.2 22 27-48 20-41 (187)
295 1jal_A YCHF protein; nucleotid 97.2 0.00019 6.4E-09 54.7 2.8 22 27-48 4-25 (363)
296 2g6b_A RAS-related protein RAB 97.2 0.00025 8.7E-09 47.6 3.2 22 28-49 13-34 (180)
297 2cxx_A Probable GTP-binding pr 97.2 0.00017 5.9E-09 48.9 2.4 21 28-48 4-24 (190)
298 1f6b_A SAR1; gtpases, N-termin 97.2 0.00018 6E-09 49.7 2.4 21 27-47 27-47 (198)
299 1ukz_A Uridylate kinase; trans 97.2 0.00025 8.4E-09 49.1 3.2 25 25-49 15-39 (203)
300 3dl0_A Adenylate kinase; phosp 97.2 0.00024 8.4E-09 49.6 3.2 23 27-49 2-24 (216)
301 2pt5_A Shikimate kinase, SK; a 97.2 0.00032 1.1E-08 46.9 3.7 24 27-50 2-25 (168)
302 2vli_A Antibiotic resistance p 97.2 0.00023 7.7E-09 48.3 2.9 26 25-50 5-30 (183)
303 3iev_A GTP-binding protein ERA 97.2 0.00018 6.2E-09 53.4 2.6 24 25-48 10-33 (308)
304 1z0f_A RAB14, member RAS oncog 97.2 0.00027 9.1E-09 47.3 3.2 22 28-49 18-39 (179)
305 2bme_A RAB4A, RAS-related prot 97.2 0.00026 9E-09 47.9 3.2 22 28-49 13-34 (186)
306 2dby_A GTP-binding protein; GD 97.2 0.00025 8.4E-09 54.2 3.3 22 28-49 4-25 (368)
307 3q72_A GTP-binding protein RAD 97.2 0.00023 7.9E-09 47.2 2.8 20 28-47 5-24 (166)
308 1wf3_A GTP-binding protein; GT 97.1 0.00021 7.2E-09 53.0 2.8 23 26-48 8-30 (301)
309 1nrj_B SR-beta, signal recogni 97.1 0.00026 9E-09 49.3 3.2 23 27-49 14-36 (218)
310 3ihw_A Centg3; RAS, centaurin, 97.1 0.00027 9.3E-09 48.2 3.2 22 27-48 22-43 (184)
311 2ius_A DNA translocase FTSK; n 97.1 0.00043 1.5E-08 55.0 4.7 30 18-47 159-189 (512)
312 2e87_A Hypothetical protein PH 97.1 0.00014 4.9E-09 55.1 1.9 25 25-49 167-191 (357)
313 1moz_A ARL1, ADP-ribosylation 97.1 0.00016 5.5E-09 48.8 1.9 20 27-46 20-39 (183)
314 2efe_B Small GTP-binding prote 97.1 0.00029 9.8E-09 47.4 3.2 21 28-48 15-35 (181)
315 1m7b_A RND3/RHOE small GTP-bin 97.1 0.00028 9.7E-09 47.9 3.2 21 28-48 10-30 (184)
316 2iyv_A Shikimate kinase, SK; t 97.1 0.00034 1.2E-08 47.6 3.5 24 27-50 4-27 (184)
317 2hxs_A RAB-26, RAS-related pro 97.1 0.00024 8.3E-09 47.6 2.8 21 28-48 9-29 (178)
318 2bov_A RAla, RAS-related prote 97.1 0.00029 9.9E-09 48.4 3.2 22 27-48 16-37 (206)
319 2xb4_A Adenylate kinase; ATP-b 97.1 0.00028 9.5E-09 49.8 3.2 23 27-49 2-24 (223)
320 3b9p_A CG5977-PA, isoform A; A 97.1 0.0003 1E-08 51.5 3.5 26 25-50 54-79 (297)
321 2fg5_A RAB-22B, RAS-related pr 97.1 0.0003 1E-08 48.2 3.2 22 28-49 26-47 (192)
322 2gf9_A RAS-related protein RAB 97.1 0.0003 1E-08 47.9 3.2 22 28-49 25-46 (189)
323 2gf0_A GTP-binding protein DI- 97.1 0.0003 1E-08 48.1 3.2 21 28-48 11-31 (199)
324 1vg8_A RAS-related protein RAB 97.1 0.0003 1E-08 48.4 3.2 22 28-49 11-32 (207)
325 3tw8_B RAS-related protein RAB 97.1 0.00027 9.2E-09 47.4 2.9 20 28-47 12-31 (181)
326 3tkl_A RAS-related protein RAB 97.1 0.00031 1.1E-08 47.9 3.2 22 28-49 19-40 (196)
327 2cdn_A Adenylate kinase; phosp 97.1 0.0003 1E-08 48.6 3.2 26 25-50 20-45 (201)
328 1l8q_A Chromosomal replication 97.1 0.00034 1.2E-08 52.0 3.6 25 26-50 38-62 (324)
329 3iby_A Ferrous iron transport 97.1 0.00024 8.2E-09 51.4 2.7 22 27-48 3-24 (256)
330 3llm_A ATP-dependent RNA helic 97.1 0.00038 1.3E-08 49.5 3.6 22 25-46 76-97 (235)
331 3kkq_A RAS-related protein M-R 97.1 0.00034 1.1E-08 47.2 3.2 21 28-48 21-41 (183)
332 2cjw_A GTP-binding protein GEM 97.1 0.00033 1.1E-08 48.1 3.2 21 28-48 9-29 (192)
333 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00031 1.1E-08 50.8 3.2 23 26-48 5-27 (260)
334 1uj2_A Uridine-cytidine kinase 97.1 0.0004 1.4E-08 49.9 3.7 25 26-50 23-47 (252)
335 2grj_A Dephospho-COA kinase; T 97.1 0.00034 1.2E-08 48.5 3.2 24 26-49 13-36 (192)
336 3oes_A GTPase rhebl1; small GT 97.1 0.00034 1.2E-08 48.2 3.2 22 28-49 27-48 (201)
337 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00035 1.2E-08 47.1 3.2 21 28-48 8-28 (186)
338 2z4s_A Chromosomal replication 97.1 0.00032 1.1E-08 54.7 3.4 24 26-49 131-154 (440)
339 2ew1_A RAS-related protein RAB 97.1 0.00034 1.2E-08 48.5 3.2 22 28-49 29-50 (201)
340 2wsm_A Hydrogenase expression/ 97.1 0.00036 1.2E-08 48.7 3.3 24 26-49 31-54 (221)
341 2xtp_A GTPase IMAP family memb 97.1 0.00026 9E-09 50.9 2.7 22 27-48 24-45 (260)
342 3t5g_A GTP-binding protein RHE 97.1 0.00036 1.2E-08 47.0 3.2 21 28-48 9-29 (181)
343 1z06_A RAS-related protein RAB 97.1 0.00036 1.2E-08 47.5 3.2 21 28-48 23-43 (189)
344 2a5j_A RAS-related protein RAB 97.1 0.00037 1.3E-08 47.6 3.2 21 28-48 24-44 (191)
345 3t5d_A Septin-7; GTP-binding p 97.1 0.00019 6.4E-09 52.3 1.8 20 28-47 11-30 (274)
346 3dz8_A RAS-related protein RAB 97.1 0.00038 1.3E-08 47.5 3.2 22 28-49 26-47 (191)
347 2f6r_A COA synthase, bifunctio 97.1 0.00034 1.2E-08 51.3 3.1 22 26-47 76-97 (281)
348 2bcg_Y Protein YP2, GTP-bindin 97.0 0.00038 1.3E-08 48.1 3.2 22 28-49 11-32 (206)
349 1a7j_A Phosphoribulokinase; tr 97.0 0.00021 7E-09 52.8 1.9 25 26-50 6-30 (290)
350 1jbk_A CLPB protein; beta barr 97.0 0.00053 1.8E-08 46.2 3.8 25 25-49 43-67 (195)
351 3bwd_D RAC-like GTP-binding pr 97.0 0.00042 1.4E-08 46.6 3.2 21 28-48 11-31 (182)
352 1zd9_A ADP-ribosylation factor 97.0 0.00041 1.4E-08 47.3 3.2 22 28-49 25-46 (188)
353 3reg_A RHO-like small GTPase; 97.0 0.00041 1.4E-08 47.4 3.2 23 27-49 25-47 (194)
354 1aky_A Adenylate kinase; ATP:A 97.0 0.0005 1.7E-08 48.3 3.7 25 26-50 5-29 (220)
355 3cph_A RAS-related protein SEC 97.0 0.00041 1.4E-08 48.0 3.2 23 27-49 22-44 (213)
356 2p5s_A RAS and EF-hand domain 97.0 0.00042 1.4E-08 47.7 3.2 22 27-48 30-51 (199)
357 2atv_A RERG, RAS-like estrogen 97.0 0.00042 1.4E-08 47.5 3.2 21 28-48 31-51 (196)
358 1x3s_A RAS-related protein RAB 97.0 0.00042 1.5E-08 47.1 3.2 23 27-49 17-39 (195)
359 2ce7_A Cell division protein F 97.0 0.00037 1.3E-08 54.9 3.2 23 28-50 52-74 (476)
360 3i8s_A Ferrous iron transport 97.0 0.00032 1.1E-08 51.2 2.6 23 27-49 5-27 (274)
361 1ltq_A Polynucleotide kinase; 97.0 0.0004 1.4E-08 51.0 3.2 21 27-47 4-24 (301)
362 3a1s_A Iron(II) transport prot 97.0 0.00033 1.1E-08 50.7 2.7 22 28-49 8-29 (258)
363 2qmh_A HPR kinase/phosphorylas 97.0 0.00044 1.5E-08 48.3 3.2 26 22-47 31-56 (205)
364 3d3q_A TRNA delta(2)-isopenten 97.0 0.00049 1.7E-08 51.9 3.7 24 27-50 9-32 (340)
365 1zuh_A Shikimate kinase; alpha 97.0 0.0006 2E-08 45.7 3.8 26 25-50 7-32 (168)
366 1gwn_A RHO-related GTP-binding 97.0 0.00045 1.5E-08 48.0 3.2 23 27-49 30-52 (205)
367 1njg_A DNA polymerase III subu 97.0 0.00053 1.8E-08 47.9 3.6 25 26-50 46-70 (250)
368 2fv8_A H6, RHO-related GTP-bin 97.0 0.00045 1.5E-08 47.8 3.2 22 27-48 27-48 (207)
369 1e4v_A Adenylate kinase; trans 97.0 0.00046 1.6E-08 48.3 3.2 23 28-50 3-25 (214)
370 1jwy_B Dynamin A GTPase domain 97.0 0.00034 1.2E-08 51.7 2.6 26 24-49 23-48 (315)
371 1zbd_A Rabphilin-3A; G protein 97.0 0.00038 1.3E-08 47.9 2.7 21 28-48 11-31 (203)
372 3tlx_A Adenylate kinase 2; str 97.0 0.00046 1.6E-08 49.4 3.2 25 25-49 29-53 (243)
373 1ksh_A ARF-like protein 2; sma 97.0 0.00031 1.1E-08 47.6 2.2 22 27-48 20-41 (186)
374 1zj6_A ADP-ribosylation factor 97.0 0.0004 1.4E-08 47.2 2.7 21 27-47 18-38 (187)
375 3c5c_A RAS-like protein 12; GD 97.0 0.00051 1.8E-08 46.8 3.2 23 27-49 23-45 (187)
376 2iwr_A Centaurin gamma 1; ANK 97.0 0.00036 1.2E-08 46.8 2.4 21 28-48 10-30 (178)
377 2fh5_B SR-beta, signal recogni 96.9 0.00053 1.8E-08 47.6 3.2 23 27-49 9-31 (214)
378 3cbq_A GTP-binding protein REM 96.9 0.00037 1.3E-08 48.0 2.3 22 27-48 25-46 (195)
379 2h17_A ADP-ribosylation factor 96.9 0.00037 1.3E-08 47.1 2.3 22 27-48 23-44 (181)
380 2gco_A H9, RHO-related GTP-bin 96.9 0.00055 1.9E-08 47.2 3.2 22 28-49 28-49 (201)
381 2o52_A RAS-related protein RAB 96.9 0.00052 1.8E-08 47.3 3.0 20 28-47 28-47 (200)
382 4dhe_A Probable GTP-binding pr 96.9 0.00019 6.6E-09 50.2 0.8 23 26-48 30-52 (223)
383 3h4m_A Proteasome-activating n 96.9 0.00063 2.2E-08 49.5 3.6 26 26-51 52-77 (285)
384 2qu8_A Putative nucleolar GTP- 96.9 0.00037 1.3E-08 49.1 2.2 22 27-48 31-52 (228)
385 2aka_B Dynamin-1; fusion prote 96.9 0.00044 1.5E-08 50.6 2.6 24 26-49 27-50 (299)
386 2atx_A Small GTP binding prote 96.9 0.00062 2.1E-08 46.4 3.2 22 27-48 20-41 (194)
387 1sxj_D Activator 1 41 kDa subu 96.9 0.00064 2.2E-08 50.8 3.4 23 27-49 60-82 (353)
388 3ice_A Transcription terminati 96.9 0.00074 2.5E-08 51.9 3.7 25 25-49 174-198 (422)
389 3crm_A TRNA delta(2)-isopenten 96.9 0.0007 2.4E-08 50.7 3.6 24 27-50 7-30 (323)
390 2il1_A RAB12; G-protein, GDP, 96.9 0.00056 1.9E-08 46.8 2.9 20 28-47 29-48 (192)
391 3exa_A TRNA delta(2)-isopenten 96.9 0.00061 2.1E-08 50.9 3.2 25 26-50 4-28 (322)
392 3def_A T7I23.11 protein; chlor 96.9 0.0005 1.7E-08 49.7 2.6 23 27-49 38-60 (262)
393 3llu_A RAS-related GTP-binding 96.9 0.00049 1.7E-08 47.2 2.5 21 27-47 22-42 (196)
394 2p65_A Hypothetical protein PF 96.9 0.00052 1.8E-08 46.2 2.6 25 25-49 43-67 (187)
395 2hf9_A Probable hydrogenase ni 96.8 0.00074 2.5E-08 47.3 3.3 24 26-49 39-62 (226)
396 3be4_A Adenylate kinase; malar 96.8 0.0007 2.4E-08 47.5 3.1 25 26-50 6-30 (217)
397 2fu5_C RAS-related protein RAB 96.8 0.00035 1.2E-08 47.1 1.5 21 28-48 11-31 (183)
398 2h92_A Cytidylate kinase; ross 96.8 0.00083 2.9E-08 46.9 3.5 25 26-50 4-28 (219)
399 2j1l_A RHO-related GTP-binding 96.8 0.00066 2.3E-08 47.3 3.0 21 27-47 36-56 (214)
400 1h65_A Chloroplast outer envel 96.8 0.00056 1.9E-08 49.6 2.7 23 27-49 41-63 (270)
401 2f7s_A C25KG, RAS-related prot 96.8 0.00068 2.3E-08 47.1 3.0 21 28-48 28-48 (217)
402 2hup_A RAS-related protein RAB 96.8 0.00074 2.5E-08 46.6 3.2 21 28-48 32-52 (201)
403 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.00086 2.9E-08 48.0 3.5 25 26-50 40-64 (262)
404 2q3h_A RAS homolog gene family 96.8 0.00074 2.5E-08 46.3 3.0 21 27-47 22-42 (201)
405 3zvl_A Bifunctional polynucleo 96.8 0.00063 2.1E-08 52.7 2.9 25 25-49 258-282 (416)
406 3cpj_B GTP-binding protein YPT 96.8 0.00078 2.7E-08 47.2 3.2 21 28-48 16-36 (223)
407 2h57_A ADP-ribosylation factor 96.8 0.00055 1.9E-08 46.6 2.3 23 27-49 23-45 (190)
408 3n70_A Transport activator; si 96.8 0.0008 2.8E-08 44.2 3.0 25 25-49 24-48 (145)
409 4bas_A ADP-ribosylation factor 96.8 0.00072 2.5E-08 46.1 2.9 21 27-47 19-39 (199)
410 3foz_A TRNA delta(2)-isopenten 96.8 0.00078 2.7E-08 50.2 3.2 26 25-50 10-35 (316)
411 4gzl_A RAS-related C3 botulinu 96.8 0.00084 2.9E-08 46.4 3.2 22 27-48 32-53 (204)
412 3lv8_A DTMP kinase, thymidylat 96.8 0.0011 3.8E-08 47.5 3.8 25 25-49 27-51 (236)
413 2b6h_A ADP-ribosylation factor 96.8 0.00075 2.5E-08 46.2 2.8 21 27-47 31-51 (192)
414 4edh_A DTMP kinase, thymidylat 96.8 0.00083 2.8E-08 47.3 3.1 25 25-49 6-30 (213)
415 3cnl_A YLQF, putative uncharac 96.8 0.00063 2.2E-08 49.4 2.5 24 27-50 101-124 (262)
416 1ak2_A Adenylate kinase isoenz 96.8 0.00087 3E-08 47.5 3.2 26 25-50 16-41 (233)
417 3q3j_B RHO-related GTP-binding 96.8 0.00091 3.1E-08 46.7 3.2 22 27-48 29-50 (214)
418 2g3y_A GTP-binding protein GEM 96.7 0.00066 2.3E-08 47.6 2.4 20 28-47 40-59 (211)
419 2r6a_A DNAB helicase, replicat 96.7 0.00073 2.5E-08 52.8 2.9 27 25-51 203-229 (454)
420 4tmk_A Protein (thymidylate ki 96.7 0.0011 3.7E-08 46.8 3.4 25 25-49 3-27 (213)
421 3v9p_A DTMP kinase, thymidylat 96.7 0.00081 2.8E-08 47.9 2.8 25 25-49 25-49 (227)
422 3p32_A Probable GTPase RV1496/ 96.7 0.0011 3.6E-08 50.2 3.6 24 26-49 80-103 (355)
423 2j0v_A RAC-like GTP-binding pr 96.7 0.001 3.5E-08 46.0 3.2 21 28-48 12-32 (212)
424 3a8t_A Adenylate isopentenyltr 96.7 0.001 3.5E-08 50.1 3.2 25 26-50 41-65 (339)
425 2chg_A Replication factor C sm 96.7 0.001 3.6E-08 45.8 3.0 23 27-49 40-62 (226)
426 2r62_A Cell division protease 96.7 0.00054 1.8E-08 49.4 1.5 23 28-50 47-69 (268)
427 2x77_A ADP-ribosylation factor 96.7 0.00069 2.4E-08 46.0 1.9 20 27-46 24-43 (189)
428 1v5w_A DMC1, meiotic recombina 96.6 0.0011 3.8E-08 49.9 3.2 24 25-48 122-145 (343)
429 2yc2_C IFT27, small RAB-relate 96.6 0.00035 1.2E-08 48.0 0.4 22 27-48 22-43 (208)
430 2orw_A Thymidine kinase; TMTK, 96.6 0.0016 5.5E-08 44.7 3.6 24 25-48 3-27 (184)
431 3tqf_A HPR(Ser) kinase; transf 96.6 0.0016 5.4E-08 44.5 3.3 25 22-46 13-37 (181)
432 2v3c_C SRP54, signal recogniti 96.6 0.0012 4.2E-08 51.4 3.1 25 26-50 100-124 (432)
433 2ocp_A DGK, deoxyguanosine kin 96.6 0.0014 4.6E-08 46.7 3.1 24 26-49 3-26 (241)
434 3umf_A Adenylate kinase; rossm 96.6 0.0014 4.8E-08 46.3 3.1 26 25-50 29-54 (217)
435 3dm5_A SRP54, signal recogniti 96.6 0.0015 5.2E-08 50.9 3.6 26 25-50 100-125 (443)
436 3tmk_A Thymidylate kinase; pho 96.6 0.0021 7.3E-08 45.4 4.0 26 25-50 5-30 (216)
437 3eph_A TRNA isopentenyltransfe 96.6 0.0013 4.5E-08 50.7 3.1 24 27-50 4-27 (409)
438 4djt_A GTP-binding nuclear pro 96.6 0.00033 1.1E-08 48.8 -0.2 20 28-47 14-33 (218)
439 3syl_A Protein CBBX; photosynt 96.6 0.0015 5.3E-08 47.9 3.4 24 26-49 68-91 (309)
440 3sr0_A Adenylate kinase; phosp 96.5 0.0016 5.4E-08 45.6 3.2 25 27-51 2-26 (206)
441 1d2n_A N-ethylmaleimide-sensit 96.5 0.0014 4.9E-08 47.4 3.0 24 27-50 66-89 (272)
442 3t15_A Ribulose bisphosphate c 96.5 0.0017 5.9E-08 47.7 3.5 26 26-51 37-62 (293)
443 3ld9_A DTMP kinase, thymidylat 96.5 0.0016 5.4E-08 46.2 3.1 25 25-49 21-45 (223)
444 1ypw_A Transitional endoplasmi 96.5 0.00086 2.9E-08 56.1 1.9 27 25-51 511-537 (806)
445 1ofh_A ATP-dependent HSL prote 96.5 0.0017 5.9E-08 47.5 3.4 27 25-51 50-76 (310)
446 2v1u_A Cell division control p 96.5 0.0016 5.5E-08 49.0 3.2 25 25-49 44-68 (387)
447 2z43_A DNA repair and recombin 96.5 0.002 6.7E-08 48.1 3.6 24 25-48 107-130 (324)
448 1ko7_A HPR kinase/phosphatase; 96.5 0.002 6.7E-08 48.1 3.5 25 23-47 142-166 (314)
449 4dcu_A GTP-binding protein ENG 96.5 0.00079 2.7E-08 52.7 1.5 24 25-48 23-46 (456)
450 3pih_A Uvrabc system protein A 96.5 0.0015 5.3E-08 55.2 3.3 34 4-41 2-40 (916)
451 3pvs_A Replication-associated 96.4 0.0021 7.3E-08 50.2 3.6 26 27-52 52-77 (447)
452 3geh_A MNME, tRNA modification 96.4 0.0018 6.3E-08 50.8 3.2 22 28-49 227-248 (462)
453 3gj0_A GTP-binding nuclear pro 96.4 0.0013 4.5E-08 45.9 2.1 21 28-48 18-39 (221)
454 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0022 7.4E-08 47.9 3.4 24 26-49 46-69 (322)
455 3hws_A ATP-dependent CLP prote 96.4 0.0022 7.4E-08 48.5 3.4 26 25-50 51-76 (363)
456 3eie_A Vacuolar protein sortin 96.4 0.0024 8.1E-08 47.5 3.5 25 27-51 53-77 (322)
457 2qgz_A Helicase loader, putati 96.4 0.0028 9.5E-08 47.0 3.9 25 26-50 153-177 (308)
458 1wxq_A GTP-binding protein; st 96.4 0.0015 5.2E-08 50.3 2.4 22 28-49 3-24 (397)
459 3uk6_A RUVB-like 2; hexameric 96.4 0.0029 1E-07 47.6 3.9 26 26-51 71-96 (368)
460 3pfi_A Holliday junction ATP-d 96.4 0.0028 9.5E-08 47.2 3.7 25 27-51 57-81 (338)
461 3d8b_A Fidgetin-like protein 1 96.3 0.0024 8.4E-08 48.2 3.4 25 26-50 118-142 (357)
462 1puj_A YLQF, conserved hypothe 96.3 0.0019 6.4E-08 47.4 2.7 23 27-49 122-144 (282)
463 3th5_A RAS-related C3 botulinu 95.3 0.00061 2.1E-08 46.9 0.0 20 28-47 33-52 (204)
464 1p5z_B DCK, deoxycytidine kina 96.3 0.0011 3.6E-08 48.0 1.2 25 25-49 24-48 (263)
465 4hlc_A DTMP kinase, thymidylat 96.3 0.0025 8.5E-08 44.6 3.1 24 26-49 3-26 (205)
466 2r44_A Uncharacterized protein 96.3 0.0024 8.2E-08 47.5 3.1 28 25-52 46-73 (331)
467 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0029 9.8E-08 49.7 3.5 26 25-50 151-176 (473)
468 4b4t_K 26S protease regulatory 96.3 0.0029 9.9E-08 49.2 3.5 24 28-51 209-232 (428)
469 2bjv_A PSP operon transcriptio 96.3 0.0025 8.7E-08 45.8 3.0 26 25-50 29-54 (265)
470 2vf7_A UVRA2, excinuclease ABC 96.3 0.0027 9.2E-08 53.3 3.5 18 25-42 36-53 (842)
471 1um8_A ATP-dependent CLP prote 96.2 0.0029 9.9E-08 48.0 3.4 26 25-50 72-97 (376)
472 2x2e_A Dynamin-1; nitration, h 96.2 0.0011 3.8E-08 50.1 1.0 25 25-49 31-55 (353)
473 1g41_A Heat shock protein HSLU 96.2 0.0032 1.1E-07 49.2 3.6 27 25-51 50-76 (444)
474 2qp9_X Vacuolar protein sortin 96.2 0.0033 1.1E-07 47.5 3.6 25 27-51 86-110 (355)
475 2qby_B CDC6 homolog 3, cell di 96.2 0.0037 1.3E-07 47.1 3.8 25 25-49 45-69 (384)
476 3pxg_A Negative regulator of g 96.2 0.0029 1E-07 49.6 3.2 24 26-49 202-225 (468)
477 3co5_A Putative two-component 96.2 0.0014 4.8E-08 42.9 1.2 25 26-50 28-52 (143)
478 2xau_A PRE-mRNA-splicing facto 96.2 0.0035 1.2E-07 52.3 3.7 27 25-51 109-135 (773)
479 2qpt_A EH domain-containing pr 96.2 0.0025 8.5E-08 51.1 2.7 24 26-49 66-89 (550)
480 1yrb_A ATP(GTP)binding protein 96.2 0.0042 1.5E-07 44.4 3.7 25 25-49 14-38 (262)
481 4b4t_M 26S protease regulatory 96.2 0.0037 1.2E-07 48.7 3.5 24 28-51 218-241 (434)
482 4b4t_L 26S protease subunit RP 96.1 0.0037 1.3E-07 48.7 3.5 24 28-51 218-241 (437)
483 3r7w_A Gtpase1, GTP-binding pr 96.1 0.0025 8.6E-08 47.2 2.5 21 28-48 6-26 (307)
484 2j37_W Signal recognition part 96.1 0.0038 1.3E-07 49.5 3.6 24 26-49 102-125 (504)
485 3ec1_A YQEH GTPase; atnos1, at 96.1 0.0036 1.2E-07 47.7 3.2 23 26-48 163-185 (369)
486 1hqc_A RUVB; extended AAA-ATPa 96.1 0.003 1E-07 46.6 2.7 25 26-50 39-63 (324)
487 1tue_A Replication protein E1; 96.1 0.0034 1.2E-07 44.0 2.7 24 27-50 60-83 (212)
488 3sjy_A Translation initiation 96.1 0.0028 9.7E-08 48.7 2.5 22 27-48 10-31 (403)
489 1g8p_A Magnesium-chelatase 38 96.0 0.0025 8.4E-08 47.6 2.0 25 26-50 46-70 (350)
490 2hjg_A GTP-binding protein ENG 96.0 0.0019 6.6E-08 50.1 1.5 21 27-47 5-25 (436)
491 2i1q_A DNA repair and recombin 96.0 0.0038 1.3E-07 46.4 3.0 24 25-48 98-121 (322)
492 3hjn_A DTMP kinase, thymidylat 96.0 0.0048 1.6E-07 42.8 3.2 23 27-49 2-24 (197)
493 4b4t_J 26S protease regulatory 96.0 0.0048 1.7E-07 47.5 3.5 25 28-52 185-209 (405)
494 3l0i_B RAS-related protein RAB 96.0 0.00063 2.1E-08 46.8 -1.3 19 28-46 36-54 (199)
495 1jr3_A DNA polymerase III subu 96.0 0.0059 2E-07 45.8 3.9 26 26-51 39-64 (373)
496 2zan_A Vacuolar protein sortin 96.0 0.0044 1.5E-07 48.3 3.3 24 26-49 168-191 (444)
497 2qen_A Walker-type ATPase; unk 96.0 0.0048 1.6E-07 45.7 3.3 24 25-48 31-54 (350)
498 2j69_A Bacterial dynamin-like 96.0 0.0034 1.2E-07 51.7 2.7 23 27-49 71-93 (695)
499 2r6f_A Excinuclease ABC subuni 95.9 0.0048 1.6E-07 52.4 3.5 37 5-41 23-60 (972)
500 3bh0_A DNAB-like replicative h 95.9 0.0056 1.9E-07 45.5 3.6 24 25-48 68-91 (315)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=2.8e-31 Score=201.91 Aligned_cols=142 Identities=16% Similarity=0.225 Sum_probs=112.4
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ ++|++..+|+++| +++++|+|||||||||||++|+|++.|++|+|+++| +++..........++.|
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G-~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG-KTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETT-EEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECC-EECcccccccchhhCCE
Confidence 4899999 9999999999888 799999999999999999999999999999999988 33311011112234679
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|+||++ .+++++||.+|+.++... +...+....+++.++++.++|.. ..|.+||+ |+ +|||
T Consensus 83 g~vfQ~~---------~l~p~ltV~eni~~~l~~--~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValAr 151 (359)
T 3fvq_A 83 GYLVQEG---------VLFPHLTVYRNIAYGLGN--GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALAR 151 (359)
T ss_dssp EEECTTC---------CCCTTSCHHHHHHTTSTT--SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred EEEeCCC---------cCCCCCCHHHHHHHHHHH--cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 9999984 688999999999997541 11112233567889999999976 57889998 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 152 AL~~~P~ 158 (359)
T 3fvq_A 152 ALAPDPE 158 (359)
T ss_dssp HHTTCCS
T ss_pred HHHcCCC
Confidence 9999996
No 2
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=3.5e-30 Score=197.07 Aligned_cols=142 Identities=17% Similarity=0.241 Sum_probs=107.0
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|+|..|+++|+ ++|++..+|++++ +++++|+|||||||||||++|+|++.|++|+|+++| +++.. . ...
T Consensus 7 ~~M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~-~---~~~ 81 (372)
T 1v43_A 7 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD-RDVTY-L---PPK 81 (372)
T ss_dssp CCCCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-S---CGG
T ss_pred eeeeeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECC-EECCC-C---Chh
Confidence 33445999999 9999888888887 789999999999999999999999999999999988 33211 1 112
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG--- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~--- 147 (159)
++.|+|+||++ .+++++||.+|+.++.. .+...+....+++.++++.++|.. ..|.+||+ |+
T Consensus 82 ~r~ig~v~Q~~---------~l~~~ltv~eni~~~~~--~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv 150 (372)
T 1v43_A 82 DRNISMVFQSY---------AVWPHMTVYENIAFPLK--IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV 150 (372)
T ss_dssp GGTEEEEEC---------------CCCHHHHHHTTCC----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH
T ss_pred hCcEEEEecCc---------ccCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 45799999984 68899999999998753 211112222457889999999975 57889998 44
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
+|||+|+.+|+
T Consensus 151 alArAL~~~P~ 161 (372)
T 1v43_A 151 AVARAIVVEPD 161 (372)
T ss_dssp HHHHHHTTCCS
T ss_pred HHHHHHhcCCC
Confidence 99999999996
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.95 E-value=7.1e-31 Score=200.97 Aligned_cols=138 Identities=20% Similarity=0.248 Sum_probs=111.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..+|+++| |++++|+|||||||||||++|+|+++|++|+|+++| +++.. . ...++.|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G-~~~~~-~---~~~~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE-KRMND-T---PPAERGV 77 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-C---CGGGSCE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECC-EECCC-C---CHHHCCE
Confidence 4899999 9999999999887 799999999999999999999999999999999988 33321 1 1124579
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+++||++ .+++++||.+|+.++... +...+....+++.++++.++|.. .+|.+||+ |+ +|||
T Consensus 78 g~VfQ~~---------~l~p~ltV~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSY---------ALYPHLSVAENMSFGLKL--AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTC---------CCCTTSCHHHHHTHHHHH--TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCC---------cCCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHH
Confidence 9999985 689999999999986431 10112233567889999999975 67889998 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 147 AL~~~P~ 153 (381)
T 3rlf_A 147 TLVAEPS 153 (381)
T ss_dssp HHHHCCS
T ss_pred HHHcCCC
Confidence 9999996
No 4
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.94 E-value=9.2e-30 Score=193.92 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=109.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ ++|++..+|++++ +++++|+|||||||||||++|+|+++|++|+|+++| +++.. . ...++.|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~-~---~~~~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD-VLVND-I---PPKYREV 77 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-S---CGGGTTE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECC-EECCC-C---ChhhCcE
Confidence 3899999 9999888888887 789999999999999999999999999999999988 33211 1 1124569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|+||++ .+++++||.+|+.++... ....+....+++.++++.++|.. ..|.+||+ |+ +|||
T Consensus 78 g~v~Q~~---------~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNY---------ALYPHMTVFENIAFPLRA--RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSC---------CCCTTSCHHHHHHGGGSS--SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred EEEecCc---------ccCCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 9999984 688999999999986431 10011223467899999999975 57889988 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 147 AL~~~P~ 153 (359)
T 2yyz_A 147 ALVKQPK 153 (359)
T ss_dssp HHTTCCS
T ss_pred HHHcCCC
Confidence 9999996
No 5
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.8e-29 Score=192.49 Aligned_cols=138 Identities=20% Similarity=0.295 Sum_probs=108.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..+|++++ +++++|+|||||||||||++|+|++.|++|+|+++| +++.. . ...++.|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~-~---~~~~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDE-KDVTE-L---PPKDRNV 77 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-S---CGGGTTE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECC-EECCc-C---CHhHCcE
Confidence 3899999 9999888888887 789999999999999999999999999999999988 33211 1 1123569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|+||++ .+++++||.+|+.++... ....+....+++.++++.++|.. ..|.+||+ |+ +|||
T Consensus 78 g~v~Q~~---------~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNW---------ALYPHMTVYKNIAFPLEL--RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTC---------CCCTTSCHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCc---------ccCCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHH
Confidence 9999984 688999999999886321 00011223467889999999975 57889988 43 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 147 AL~~~P~ 153 (362)
T 2it1_A 147 ALVKEPE 153 (362)
T ss_dssp HHTTCCS
T ss_pred HHHcCCC
Confidence 9999996
No 6
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.93 E-value=1.9e-29 Score=193.21 Aligned_cols=142 Identities=16% Similarity=0.202 Sum_probs=109.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--CceeEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~~ 76 (159)
.|+++|+ ++|++..+|++++ +++++|+|||||||||||++|+|++.|++|+|+++| +++...... ....++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD-KLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT-EEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECC-EECccccccccCCHhHC
Confidence 4899999 9999888888887 789999999999999999999999999999999987 332110000 111245
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.|+|+||++ .+++++||.+|+.++.. .....+....+++.++++.++|.. ..|.+||+ |+ +|
T Consensus 82 ~ig~v~Q~~---------~l~~~ltv~eni~~~~~--~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 82 DIAMVFQSY---------ALYPHMTVYDNIAFPLK--LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp SEEEECSCC---------CCCTTSCHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCC---------ccCCCCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence 799999984 68899999999988632 100011223467889999999975 57889988 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
||+|+.+|+
T Consensus 151 ArAL~~~P~ 159 (372)
T 1g29_1 151 GRAIVRKPQ 159 (372)
T ss_dssp HHHHHTCCS
T ss_pred HHHHhcCCC
Confidence 999999996
No 7
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.93 E-value=2.3e-29 Score=191.64 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=109.4
Q ss_pred EEEEeCe-eeecCCe--eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh-CCCceeE
Q psy17514 5 SMVLDGF-KSYGTRV--EINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN-GQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~--~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~ 75 (159)
.|+++|+ +.|++.. +|++++ +++++|+|||||||||||++|+|++.|++|+|.++| +++.... ......+
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETT-EEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-EECcccccccCChhh
Confidence 3899999 9998877 888887 789999999999999999999999999999999987 3321100 0011134
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
+.|+|+||++ .+++++||.+|+.++... +........+++.++++.++|.. ..|.+||+ |+ +
T Consensus 82 r~ig~v~Q~~---------~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 82 RKIGMVFQTW---------ALYPNLTAFENIAFPLTN--MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA 150 (353)
T ss_dssp SCEEEEETTS---------CCCTTSCHHHHHHGGGTT--SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred CCEEEEeCCC---------ccCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence 6799999984 688999999999886431 00011223467889999999975 57889988 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
|||+|+.+|+
T Consensus 151 lAraL~~~P~ 160 (353)
T 1oxx_K 151 LARALVKDPS 160 (353)
T ss_dssp HHHHHTTCCS
T ss_pred HHHHHHhCCC
Confidence 9999999996
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.93 E-value=3.2e-29 Score=190.62 Aligned_cols=138 Identities=21% Similarity=0.239 Sum_probs=109.2
Q ss_pred EEEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.| ++..+|++++ +++++|+|||||||||||++|+|+++|++|+|+++| +++.. ....++.
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g-~~i~~----~~~~~r~ 88 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG-KRVTD----LPPQKRN 88 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT----CCGGGSS
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC-EECCc----CChhhCc
Confidence 5899999 999 8777888887 789999999999999999999999999999999988 33211 1113467
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
|+++||++ .+++++||.+|+.++... ....+....+++.++++.++|.. ..|.+||+ |+ +||
T Consensus 89 ig~v~Q~~---------~l~~~ltv~eni~~~l~~--~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNY---------ALFQHMTVYDNVSFGLRE--KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGG---------CCCTTSCHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCc---------ccCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 99999984 688999999999886321 00011223467889999999975 57889988 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
|+|+.+|+
T Consensus 158 rAL~~~P~ 165 (355)
T 1z47_A 158 RALAPRPQ 165 (355)
T ss_dssp HHHTTCCS
T ss_pred HHHHcCCC
Confidence 99999996
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=2e-28 Score=186.42 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=108.0
Q ss_pred EEEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC-CCce
Q psy17514 5 SMVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG-QAGV 73 (159)
Q Consensus 5 ~l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~-~~~~ 73 (159)
.|+++|+ +.|+. ..+|+++| |++++|+||||||||||+++|+|+++|++|+|.++| +++..... ....
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G-~~i~~~~~~~~~~ 102 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESELTK 102 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECSSCCHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC-EECCcCCHHHHHH
Confidence 5899999 99964 35788887 799999999999999999999999999999999987 33211000 0001
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch--
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG-- 147 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~-- 147 (159)
.++.|+|+||++ .+++.+||.+|+.++.. .....+....+++.++++.++|.. .+|.+||+ |+
T Consensus 103 ~r~~Ig~v~Q~~---------~l~~~~TV~env~~~~~--~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHF---------NLLSSRTVFGNVALPLE--LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSC---------CCCTTSCHHHHHHHHHH--HSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCC---------ccCCCCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHH
Confidence 245799999985 57888899999988643 111122233567889999999975 57889988 33
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
+|||||+.+|+
T Consensus 172 VaIArAL~~~P~ 183 (366)
T 3tui_C 172 VAIARALASNPK 183 (366)
T ss_dssp HHHHHHTTTCCS
T ss_pred HHHHHHHhcCCC
Confidence 99999999996
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=4.2e-29 Score=184.51 Aligned_cols=143 Identities=19% Similarity=0.288 Sum_probs=105.0
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ ++|++ ..+|+++| |++++|+||||||||||+++|+|+++|++|+|+++| +++..........++.
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G-~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN-KPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECC-EECCcccccHHHHhCc
Confidence 6999999 99975 45899888 799999999999999999999999999999999987 3220000000112457
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
|+++||++.. .++ .+||.+|+.++... .........+++.++++.++|.. ..+..||+ |+ +||
T Consensus 86 ig~v~Q~~~~-------~~~-~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 86 IGIVFQDPDN-------QLF-SASVYQDVSFGAVN--MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp EEEECSSGGG-------TCC-SSBHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEEEEcCccc-------ccc-cCcHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 9999998631 123 56999999875321 00112223467889999999975 56788888 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++|+.+|+
T Consensus 156 raL~~~P~ 163 (275)
T 3gfo_A 156 GVLVMEPK 163 (275)
T ss_dssp HHHTTCCS
T ss_pred HHHHcCCC
Confidence 99999996
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=6.2e-28 Score=173.63 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=105.6
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--CceeEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~~ 76 (159)
.|+++|+ +.|++..+|+++| +++++|+||||||||||+++|+|+++|++|+|+++| .++...... ....++
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETT-EECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCCCCHHHHHHHHhC
Confidence 5999999 9998888899888 789999999999999999999999999999999987 222100000 000125
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.|+++||++ .+++.+||.+|+.++.. ..........+++.++++.++|.. ..+.+||+ |+ +|
T Consensus 83 ~i~~v~q~~---------~l~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 83 KLGFVFQFH---------YLIPELTALENVIVPML--KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HEEEECSSC---------CCCTTSCHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred cEEEEecCc---------ccCCCCCHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 699999985 46777899999977422 100011122456888999999975 46778888 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++|+.+|+
T Consensus 152 aral~~~p~ 160 (224)
T 2pcj_A 152 ARALANEPI 160 (224)
T ss_dssp HHHTTTCCS
T ss_pred HHHHHcCCC
Confidence 999999996
No 12
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.92 E-value=2e-28 Score=185.92 Aligned_cols=133 Identities=15% Similarity=0.241 Sum_probs=106.6
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|+++|+ ++|++. +|++++ +++++|+|||||||||||++|+|++.|++|+|+++| +++.. ....++.|+
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g-~~i~~----~~~~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG-KDVTD----LSPEKHDIA 75 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETT-EECTT----SCHHHHTCE
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC-EECCC----CchhhCcEE
Confidence 789999 999887 888887 789999999999999999999999999999999988 33211 111245799
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHh
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKV 152 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~ 152 (159)
|+||++ .+++++||.+|+.++.. .+ +... .+++.++++.++|.. ..|.+||+ |+ +|||+
T Consensus 76 ~v~Q~~---------~l~~~ltv~enl~~~~~--~~--~~~~-~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAra 141 (348)
T 3d31_A 76 FVYQNY---------SLFPHMNVKKNLEFGMR--MK--KIKD-PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARA 141 (348)
T ss_dssp EECTTC---------CCCTTSCHHHHHHHHHH--HH--CCCC-HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEecCc---------ccCCCCCHHHHHHHHHH--Hc--CCCH-HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 999984 68899999999988642 11 1111 267899999999975 57889988 43 99999
Q ss_pred hcCCCC
Q psy17514 153 LNMKPH 158 (159)
Q Consensus 153 l~~~p~ 158 (159)
|+.+|+
T Consensus 142 L~~~P~ 147 (348)
T 3d31_A 142 LVTNPK 147 (348)
T ss_dssp TTSCCS
T ss_pred HHcCCC
Confidence 999996
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=1.5e-28 Score=180.54 Aligned_cols=142 Identities=16% Similarity=0.253 Sum_probs=106.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC-ceeEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA-GVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~~~ 77 (159)
.|+++|+ +.|++..+|++++ +++++|+|||||||||||++|+|+++|++|+|+++| +++. ..... ...++.
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~i~-~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG-INLK-AKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EESS-STTCCHHHHHHH
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC-EECC-CccccHHHHhCc
Confidence 4899999 9998888899887 789999999999999999999999999999999988 3321 00000 112456
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHh
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia 150 (159)
|+++||++ .+++.+||.+|+.++....... ......+++.++++.++|.. ..+.+||+ |+ +||
T Consensus 102 i~~v~Q~~---------~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 102 VGMVFQRF---------NLFPHMTVLNNITLAPMKVRKW-PREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp EEEECSSC---------CCCTTSCHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCC---------cCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 99999985 4677789999997742000000 11122457888999999965 46778888 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++|+.+|+
T Consensus 172 raL~~~p~ 179 (263)
T 2olj_A 172 RALAMEPK 179 (263)
T ss_dssp HHHTTCCS
T ss_pred HHHHCCCC
Confidence 99999996
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=4.5e-28 Score=177.63 Aligned_cols=143 Identities=15% Similarity=0.182 Sum_probs=106.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..+|+++| |++++|+||||||||||+++|+|+++|++|+|.++| +++.. .......++.|
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN-KDITN-KEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECTT-CCHHHHHHHTE
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCC-CCHHHHHhCCE
Confidence 5999999 9999888999998 689999999999999999999999999999999987 32210 00000123469
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCce-EEEE----------CCEEeCHHHHHHHHHhcCccc---CCCeeEE
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNT-RYMI----------NGSSVNPKRVSDLFSSVNLNV---NNPHFLI 144 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~-~~~~----------~~~~~~~~~~~~~l~~~~l~~---~~~~~l~ 144 (159)
++++|++ .+++++||.+|+.++... .... .......+++.++++.++|.. ..+..||
T Consensus 85 ~~v~q~~---------~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 155 (257)
T 1g6h_A 85 VRTFQTP---------QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155 (257)
T ss_dssp EECCCCC---------GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred EEEccCC---------ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence 9999985 467778999999875321 0000 011122457889999999975 4577888
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ +||++|+.+|+
T Consensus 156 gGqkQrv~iAraL~~~p~ 173 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPK 173 (257)
T ss_dssp HHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 8 33 99999999996
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=4.5e-28 Score=177.39 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=105.9
Q ss_pred EEEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 3 IKSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 3 ~~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
|..|+++|+ +.|++..+|++++ |++++|+|||||||||||++|+|+++|++|+|+++| .++.. .....++
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~~~~---~~~~~~~ 88 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG-KNVVE---EPHEVRK 88 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EETTT---CHHHHHT
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC-EECCc---cHHHHhh
Confidence 446999999 9999888899887 789999999999999999999999999999999987 33211 0011235
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
.|++++|++ .+++.+||.+|+.+... ..........+++.++++.++|.. ..+..||+ |+ +|
T Consensus 89 ~i~~v~q~~---------~l~~~ltv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~l 157 (256)
T 1vpl_A 89 LISYLPEEA---------GAYRNMQGIEYLRFVAG--FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLI 157 (256)
T ss_dssp TEEEECTTC---------CCCTTSBHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHH
T ss_pred cEEEEcCCC---------CCCCCCcHHHHHHHHHH--HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHH
Confidence 699999985 46677899999977422 100011112356788999999975 45778888 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
|++|+.+|+
T Consensus 158 AraL~~~p~ 166 (256)
T 1vpl_A 158 ARALMVNPR 166 (256)
T ss_dssp HHHHTTCCS
T ss_pred HHHHHcCCC
Confidence 999999996
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.4e-27 Score=173.43 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=104.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ ++|++..+|++++ |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .......++.|
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG-QDITN-KPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECTT-CCHHHHHHTTE
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EECCC-CCHHHHHhCCE
Confidence 5999999 9998888899887 789999999999999999999999999999999987 32210 00000113359
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcC-ccc---CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVN-LNV---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~---~~~~~l~~-q~---~ia 150 (159)
++++|++ .+++.+||.+|+.++.... . ......+.+.++++.++ |.. ..+..||+ |+ +||
T Consensus 84 ~~v~q~~---------~l~~~ltv~enl~~~~~~~--~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 84 ALVPEGR---------RIFPELTVYENLMMGAYNR--K-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEECSSC---------CCCTTSBHHHHHHGGGTTC--C-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred EEEecCC---------ccCCCCcHHHHHHHhhhcC--C-CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHH
Confidence 9999985 4677789999998753111 1 11122356778888884 754 45778888 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
|+|+.+|+
T Consensus 152 raL~~~p~ 159 (240)
T 1ji0_A 152 RALMSRPK 159 (240)
T ss_dssp HHHTTCCS
T ss_pred HHHHcCCC
Confidence 99999996
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=2e-27 Score=174.87 Aligned_cols=138 Identities=18% Similarity=0.169 Sum_probs=106.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..+|+++| |++++|+||||||||||+++|+|+++|++|+|+++| +++... . ....++.+
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~~~~~~-~-~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG-QNLNSW-Q-PKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT-EETTTS-C-HHHHHHHE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-EECCcC-C-HHHHhheE
Confidence 5899999 9999999999988 799999999999999999999999999999999988 332110 0 01123468
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-~ia~ 151 (159)
++++|++ .+++.+||.+|+.++.... ......+++.++++.++|.. ..+.+||+ | + +|||
T Consensus 88 ~~v~q~~---------~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAr 154 (266)
T 4g1u_C 88 AVMRQYS---------ELAFPFSVSEVIQMGRAPY----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLAR 154 (266)
T ss_dssp EEECSCC---------CCCSCCBHHHHHHGGGTTS----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHH
T ss_pred EEEecCC---------ccCCCCCHHHHHHhhhhhc----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence 9999985 3455679999998764311 12223567889999999875 45678888 3 3 9999
Q ss_pred hhcC------CCC
Q psy17514 152 VLNM------KPH 158 (159)
Q Consensus 152 ~l~~------~p~ 158 (159)
+|+. +|+
T Consensus 155 aL~~~~~~~~~p~ 167 (266)
T 4g1u_C 155 VLAQLWQPQPTPR 167 (266)
T ss_dssp HHHHTCCSSCCCE
T ss_pred HHhcccccCCCCC
Confidence 9998 885
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.91 E-value=2.1e-27 Score=174.44 Aligned_cols=143 Identities=17% Similarity=0.261 Sum_probs=105.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHH----------hh
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIY----------KN 68 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~----------~~ 68 (159)
.|+++|+ +.|++..+|+++| |++++|+|||||||||||++|+|+++|++|+|+++| .++.. ..
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG-QNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEccccccccccccccC
Confidence 5999999 9998888899887 789999999999999999999999999999999987 22210 00
Q ss_pred -CCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc----CCCeeE
Q psy17514 69 -GQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV----NNPHFL 143 (159)
Q Consensus 69 -~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~l 143 (159)
......++.|+++||++ .+++.+||.+|+.++....... ......+++.++++.++|.. ..+..|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~---------~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 154 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHF---------NLWSHMTVLENVMEAPIQVLGL-SKHDARERALKYLAKVGIDERAQGKYPVHL 154 (262)
T ss_dssp HHHHHHHHHHEEEECSSC---------CCCTTSCHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred hhhHHHHhcceEEEecCc---------ccCCCCcHHHHHHhhHHHhcCC-CHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence 00001235699999985 4677889999998742000000 11122457888999999853 467888
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||+|+.+|+
T Consensus 155 SgGq~qRv~lAraL~~~p~ 173 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPD 173 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 88 33 99999999996
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.91 E-value=3.8e-27 Score=170.61 Aligned_cols=143 Identities=17% Similarity=0.252 Sum_probs=103.7
Q ss_pred EEEeCe-eeecC----CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCC--Cce
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQ--AGV 73 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~--~~~ 73 (159)
|+++|+ +.|+. ..+|+++| +++++|+|||||||||||++|+|+++|++|+|.++| .++...... ...
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECTTCCHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC-EEcccCCHHHHHHH
Confidence 789999 99973 35788887 799999999999999999999999999999999987 222100000 001
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEE-ECCEEeCHHHHHHHHHhcCccc----CCCeeEEe-Ch
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM-INGSSVNPKRVSDLFSSVNLNV----NNPHFLIM-QG 147 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~l~~-q~ 147 (159)
.++.|+++||++ .+++.+||.+|+.++...... ........+++.++++.++|.. ..+.+||+ |+
T Consensus 81 ~~~~i~~v~Q~~---------~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 81 RRDKIGFVFQQF---------NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHHEEEECTTC---------CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred hhccEEEEecCC---------ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHH
Confidence 134699999986 477788999999774220000 0012223457788999999864 45788888 33
Q ss_pred ---hHhHhhcCCCC
Q psy17514 148 ---RVTKVLNMKPH 158 (159)
Q Consensus 148 ---~ia~~l~~~p~ 158 (159)
+|||+|+.+|+
T Consensus 152 QRv~iAral~~~p~ 165 (235)
T 3tif_A 152 QRVAIARALANNPP 165 (235)
T ss_dssp HHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999996
No 20
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.90 E-value=1.5e-26 Score=165.15 Aligned_cols=133 Identities=15% Similarity=0.162 Sum_probs=104.7
Q ss_pred EEEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 4 KSMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 4 ~~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
+.|+++|+ +.|++ .+|.+++ +++++|+|||||||||||++|+|+++|++|+|.++| .++. ..++.
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~~~-------~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG-VPIT-------KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-EEGG-------GGGGG
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC-EEhh-------hhcCc
Confidence 46999999 99988 8999888 789999999999999999999999999999999987 3321 12456
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CCCeeEEe-Ch---hHhH
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~-q~---~ia~ 151 (159)
|++++|++ .+++.+||.+|+.++.. . .+.....+++.++++.++|.. ..+..+|+ |+ +||+
T Consensus 80 i~~v~q~~---------~~~~~~tv~enl~~~~~--~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~lar 146 (214)
T 1sgw_A 80 IFFLPEEI---------IVPRKISVEDYLKAVAS--L--YGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLAS 146 (214)
T ss_dssp EEEECSSC---------CCCTTSBHHHHHHHHHH--H--TTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHH
T ss_pred EEEEeCCC---------cCCCCCCHHHHHHHHHH--h--cCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHH
Confidence 99999986 35677899999977422 1 010112567889999999874 44667777 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 147 aL~~~p~ 153 (214)
T 1sgw_A 147 TLLVNAE 153 (214)
T ss_dssp HTTSCCS
T ss_pred HHHhCCC
Confidence 9999996
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=3e-26 Score=168.67 Aligned_cols=136 Identities=13% Similarity=0.182 Sum_probs=104.3
Q ss_pred EEEeCe-eeec--C---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCcee
Q psy17514 6 MVLDGF-KSYG--T---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~--~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 74 (159)
|+++|+ +.|+ + ..+|+++| |++++|+|||||||||||++|+|+++|++|+|+++| .++.. . ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-~~~~~-~----~~ 76 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG-ERKKG-Y----EI 76 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EECCH-H----HH
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC-EECch-H----Hh
Confidence 789999 9997 4 56888887 789999999999999999999999999999999987 22211 0 12
Q ss_pred EEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc--c---CCCeeEEe-Ch-
Q psy17514 75 KASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN--V---NNPHFLIM-QG- 147 (159)
Q Consensus 75 ~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~---~~~~~l~~-q~- 147 (159)
++.|++++|++. ..++.+||.+|+.++.... . ......+++.++++.++|. . ..+..||+ |+
T Consensus 77 ~~~i~~v~q~~~--------~~~~~~tv~enl~~~~~~~--~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~q 145 (266)
T 2yz2_A 77 RRNIGIAFQYPE--------DQFFAERVFDEVAFAVKNF--Y-PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 145 (266)
T ss_dssp GGGEEEECSSGG--------GGCCCSSHHHHHHHTTTTT--C-TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHH
T ss_pred hhhEEEEeccch--------hhcCCCcHHHHHHHHHHhc--C-CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHH
Confidence 356999999841 2345579999998864311 1 2223456789999999998 4 56778888 33
Q ss_pred --hHhHhhcCCCC
Q psy17514 148 --RVTKVLNMKPH 158 (159)
Q Consensus 148 --~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 146 Rv~lAraL~~~p~ 158 (266)
T 2yz2_A 146 RVAIASVIVHEPD 158 (266)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCC
Confidence 99999999996
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=6.2e-26 Score=167.93 Aligned_cols=146 Identities=11% Similarity=0.072 Sum_probs=103.3
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++..+|++++ |++++|+|||||||||||++|+|+++|++|+|.++| .++..........++.|
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG-KMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT-BCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC-EEcccccCCHHHHcCcE
Confidence 4899999 9999888899888 789999999999999999999999999999999987 22210000001123569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECC--EEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMING--SSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RV 149 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~i 149 (159)
++++|++.. .+.+.+||.+|+.++........+ .....+++.++++.++|.. ..+..||+ |+ +|
T Consensus 100 ~~v~Q~~~~-------~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 100 GFVSHSLLE-------KFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp EEECHHHHT-------TSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEEcCccc-------ccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 999998521 122346999999876321111111 1122456888999999965 45778888 33 99
Q ss_pred hHhhcCCCC
Q psy17514 150 TKVLNMKPH 158 (159)
Q Consensus 150 a~~l~~~p~ 158 (159)
||+|+.+|+
T Consensus 173 AraL~~~p~ 181 (279)
T 2ihy_A 173 ARALMGQPQ 181 (279)
T ss_dssp HHHHHTCCS
T ss_pred HHHHhCCCC
Confidence 999999996
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=1.2e-25 Score=164.26 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=100.7
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.|+ +..+|+++| |++++|+|||||||||||++|+|+++|++|+|.. ++.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----------------~~~ 67 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----------------YQS 67 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE----------------CSC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE----------------ecc
Confidence 5899999 9998 788899887 7899999999999999999999999999999871 235
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEEC--CEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---h
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMIN--GSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---R 148 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ 148 (159)
|++++|++ .+++.+||.+|+.++........ ......+++.++++.++|.. ..+..+|+ |+ +
T Consensus 68 i~~v~q~~---------~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 68 IGFVPQFF---------SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EEEECSCC---------CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEcCCC---------ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHH
Confidence 99999985 35667899999987532100000 11122456888999999975 45778888 33 9
Q ss_pred HhHhhcCCCC
Q psy17514 149 VTKVLNMKPH 158 (159)
Q Consensus 149 ia~~l~~~p~ 158 (159)
|||+|+.+|+
T Consensus 139 lAraL~~~p~ 148 (253)
T 2nq2_C 139 IARAIASECK 148 (253)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHcCCC
Confidence 9999999996
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.89 E-value=2e-26 Score=167.22 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=101.6
Q ss_pred EEEeCe-eeecCCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|+++|+ +.|++ +|++++ .++++|+|||||||||||++|+|+++|++|+|+++| .++.. . ...++.|++
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~---~~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG-ADITP-L---PPERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT-EECTT-S---CTTTSCCBC
T ss_pred EEEEEEEEEeCC--EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECCc-C---chhhCcEEE
Confidence 689999 99975 367665 378999999999999999999999999999999988 33211 1 112456999
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhHhh
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTKVL 153 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~~l 153 (159)
+||++ .+++.+||.+|+.++... .+.....+++.++++.++|.. ..+.++|+ |+ +|||+|
T Consensus 75 v~q~~---------~l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 75 VPQDY---------ALFPHLSVYRNIAYGLRN----VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp CCSSC---------CCCTTSCHHHHHHTTCTT----SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EcCCC---------ccCCCCcHHHHHHHHHHH----cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 99985 467778999999886431 111112467889999999965 46778888 33 999999
Q ss_pred cCCCC
Q psy17514 154 NMKPH 158 (159)
Q Consensus 154 ~~~p~ 158 (159)
+.+|+
T Consensus 142 ~~~p~ 146 (240)
T 2onk_A 142 VIQPR 146 (240)
T ss_dssp TTCCS
T ss_pred HcCCC
Confidence 99996
No 25
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.88 E-value=4.4e-25 Score=160.55 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=99.9
Q ss_pred EEEeCe-eee-cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGF-KSY-GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~-~~~-~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
|+++|+ +.| ++..+|+++| |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .. ....++.|
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~-~~-~~~~~~~i 78 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG-QPIDN-IS-LENWRSQI 78 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETT-EESTT-TS-CSCCTTTC
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEhhh-CC-HHHHHhhE
Confidence 789999 999 5677888887 789999999999999999999999999999999988 33211 11 11134569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEE
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLI 144 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~ 144 (159)
++++|++ .+++ .||.+|+.++... ....+++.++++.+++.. ..+..+|
T Consensus 79 ~~v~q~~---------~l~~-~tv~enl~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS 141 (243)
T 1mv5_A 79 GFVSQDS---------AIMA-GTIRENLTYGLEG-------DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141 (243)
T ss_dssp CEECCSS---------CCCC-EEHHHHTTSCTTS-------CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC
T ss_pred EEEcCCC---------cccc-ccHHHHHhhhccC-------CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCC
Confidence 9999985 3555 5999999876221 123456778888887753 1235777
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ +|||+|+.+|+
T Consensus 142 gGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 142 GGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp HHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 7 33 99999999996
No 26
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.3e-25 Score=170.48 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=101.9
Q ss_pred EEEEeCe-eee--cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSY--GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~--~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ ++| ++..+|+++| +++++|+|||||||||||++|+|++. ++|+|+++| +++... . ....++
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G-~~i~~~-~-~~~~rr 94 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDG-VSWDSI-T-LEQWRK 94 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESS-CBTTSS-C-HHHHHH
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECC-EECCcC-C-hHHHhC
Confidence 4899999 999 5677888887 79999999999999999999999998 899999988 332110 0 011246
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCee-----------
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHF----------- 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~----------- 142 (159)
.|+++||++ .+|+ +||.+|+.+... ...+++.++++.++|.. ..|..
T Consensus 95 ~ig~v~Q~~---------~lf~-~tv~enl~~~~~---------~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~ 155 (390)
T 3gd7_A 95 AFGVIPQKV---------FIFS-GTFRKNLDPNAA---------HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV 155 (390)
T ss_dssp TEEEESCCC---------CCCS-EEHHHHHCTTCC---------SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTT
T ss_pred CEEEEcCCc---------ccCc-cCHHHHhhhccc---------cCHHHHHHHHHHhCCHHHHhhccccccccccccccc
Confidence 799999985 4666 699999875321 23567889999999975 55666
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
||+ |+ +|||+|+.+|+
T Consensus 156 LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 787 33 99999999996
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.88 E-value=3.5e-25 Score=161.38 Aligned_cols=133 Identities=18% Similarity=0.191 Sum_probs=99.0
Q ss_pred EEEEeCe-eee--cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSY--GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~--~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.++++|+ ++| ++..+|+++| |++++|+|||||||||||++|+|+++|++|+|.++| .++.. .. ....++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g-~~~~~-~~-~~~~~~ 83 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG-HDLAL-AD-PNWLRR 83 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EETTT-SC-HHHHHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC-EEhhh-CC-HHHHHh
Confidence 5899999 999 4677888887 789999999999999999999999999999999987 33211 00 011245
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|++ .+++ .||.+|+.++.. . ...+++.++++.+++.. ..+..
T Consensus 84 ~i~~v~Q~~---------~l~~-~tv~enl~~~~~------~--~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~ 145 (247)
T 2ff7_A 84 QVGVVLQDN---------VLLN-RSIIDNISLANP------G--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG 145 (247)
T ss_dssp HEEEECSSC---------CCTT-SBHHHHHTTTCT------T--CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTC
T ss_pred cEEEEeCCC---------cccc-ccHHHHHhccCC------C--CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCC
Confidence 699999986 3455 499999987531 1 12456667777777643 13467
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
||+ |+ +|||+|+.+|+
T Consensus 146 LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 887 33 99999999996
No 28
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.88 E-value=1.5e-21 Score=135.66 Aligned_cols=153 Identities=31% Similarity=0.548 Sum_probs=109.2
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh-hHHHHHHhhCC--CceeEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN-TLQELIYKNGQ--AGVTKAS 77 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~-~~~~~~~~~~~--~~~~~~~ 77 (159)
|++..|+++||++|++..+-.+++.++++|+||||||||||+++|++++.+..|..... ...++++.... .....+.
T Consensus 2 M~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (182)
T 3kta_A 2 PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAE 81 (182)
T ss_dssp CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEE
T ss_pred ceEEEEEEeCeEeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEE
Confidence 66889999999999532222467777999999999999999999999998876543222 22233322110 0124578
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p 157 (159)
|.++||++.....+ ....+++.+.+.......+.+++.....+++.++++.+++..+.. .+.+|+++.+++..+|
T Consensus 82 v~~~f~~~~~~~~~----~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l~~~~~ 156 (182)
T 3kta_A 82 VAIYFNNEDRGFPI----DEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY-NIVLQGDITKFIKMSP 156 (182)
T ss_dssp EEEEEECTTCCSSS----SSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT-TEECTTCTTHHHHSCH
T ss_pred EEEEEeCCCccccc----CCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCC-EEEEcccHHHHHhCCH
Confidence 99999987543211 123578888887655566888999888899999999999987655 4677988888777766
Q ss_pred C
Q psy17514 158 H 158 (159)
Q Consensus 158 ~ 158 (159)
.
T Consensus 157 ~ 157 (182)
T 3kta_A 157 L 157 (182)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.88 E-value=1.8e-26 Score=168.52 Aligned_cols=143 Identities=11% Similarity=0.161 Sum_probs=98.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHH--hCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFV--LGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~--~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|++..+|+++| |++++|+||||||||||+++|+|+ ++|++|+|+++| .++.. .......+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g-~~~~~-~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG-ENILE-LSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETT-EECTT-SCHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC-EECCC-CCHHHHHhC
Confidence 4899999 9998888899887 789999999999999999999998 788999999987 32210 000000123
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEE-CCEEeCHHHHHHHHHhcCcc-c---CCCee-EEe-Ch--
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMI-NGSSVNPKRVSDLFSSVNLN-V---NNPHF-LIM-QG-- 147 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~---~~~~~-l~~-q~-- 147 (159)
.+++++|++ .+++.+|+.+|+.++....... .......+++.++++.++|. . ..+.. ||+ |+
T Consensus 81 ~i~~v~q~~---------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr 151 (250)
T 2d2e_A 81 GLFLAFQYP---------VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR 151 (250)
T ss_dssp TBCCCCCCC---------C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred cEEEeccCC---------ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 478899985 4667789999887642100000 01111235678899999994 3 44566 888 33
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
+|||+|+.+|+
T Consensus 152 v~iAraL~~~p~ 163 (250)
T 2d2e_A 152 NEILQLLVLEPT 163 (250)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHHHcCCC
Confidence 99999999996
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=7.7e-25 Score=163.74 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=98.7
Q ss_pred EEEEeCe-eeec-CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYG-TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~-~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ +.|+ +..+|++++ +++++|+||||||||||+++|+|++.|++|+|.++| .++.... ....++.
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G-~~i~~~~--~~~~r~~ 129 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG-QDISQVT--QASLRSH 129 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETT-EETTSBC--HHHHHHT
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECC-EEcccCC--HHHHhcc
Confidence 4899999 9995 567889887 799999999999999999999999999999999988 3321100 0113567
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l 143 (159)
|++|+|++ .+|+ .||.+|+.++... ....++.++++.+++.. .....|
T Consensus 130 i~~v~Q~~---------~lf~-~Tv~eNi~~~~~~--------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L 191 (306)
T 3nh6_A 130 IGVVPQDT---------VLFN-DTIADNIRYGRVT--------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKL 191 (306)
T ss_dssp EEEECSSC---------CCCS-EEHHHHHHTTSTT--------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCC
T ss_pred eEEEecCC---------ccCc-ccHHHHHHhhccc--------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCC
Confidence 99999986 3554 5999999987431 12345555555554432 344678
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||+|+.+|+
T Consensus 192 SGGqrQRvaiARAL~~~p~ 210 (306)
T 3nh6_A 192 SGGEKQRVAIARTILKAPG 210 (306)
T ss_dssp CHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHHhCCC
Confidence 77 43 99999999986
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.86 E-value=9.6e-25 Score=161.03 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=98.4
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ +.|++ ..+|.+++ +++++|+|||||||||||++|+|+++|++|+|.++| .++.. .. ....+
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g-~~i~~-~~-~~~~~ 92 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG-EPLVQ-YD-HHYLH 92 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT-EEGGG-BC-HHHHH
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC-EEccc-CC-HHHHh
Confidence 4899999 99976 67888887 789999999999999999999999999999999987 33211 00 01124
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeC-----HHHHHHHHHhc--Cccc---CCCeeEEe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVN-----PKRVSDLFSSV--NLNV---NNPHFLIM 145 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~---~~~~~l~~ 145 (159)
+.|+|++|++ .+++ .||.+|+.++... . ...... ...+.++++.+ ++.. ..+..||+
T Consensus 93 ~~i~~v~Q~~---------~l~~-~tv~enl~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg 159 (271)
T 2ixe_A 93 TQVAAVGQEP---------LLFG-RSFRENIAYGLTR-T--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSG 159 (271)
T ss_dssp HHEEEECSSC---------CCCS-SBHHHHHHTTCSS-C--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCH
T ss_pred ccEEEEecCC---------cccc-ccHHHHHhhhccc-C--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCH
Confidence 5699999986 3555 4999999886421 1 010000 11234566666 5643 45677888
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ +|||+|+.+|+
T Consensus 160 Gq~QRv~lAraL~~~p~ 176 (271)
T 2ixe_A 160 GQRQAVALARALIRKPR 176 (271)
T ss_dssp HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999996
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.86 E-value=5.9e-25 Score=160.28 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=98.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +. .+|++++ |++++|+|||||||||||++|+|+++|+ |+|.++| .++.. .. ....++.+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g-~~~~~-~~-~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAG-QPLEA-WS-ATKLALHR 75 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETT-EEGGG-SC-HHHHHHHE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECC-EECCc-CC-HHHHhceE
Confidence 4899999 55 5677777 7899999999999999999999999999 9999987 33211 00 01124569
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|++|++ .+++.+||.+|+.++... .. ..+++.++++.++|.. ..+..||+ |+ +||+
T Consensus 76 ~~v~q~~---------~~~~~~tv~e~l~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAr 139 (249)
T 2qi9_C 76 AYLSQQQ---------TPPFATPVWHYLTLHQHD-----KT--RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAA 139 (249)
T ss_dssp EEECSCC---------CCCTTCBHHHHHHTTCSS-----TT--CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred EEECCCC---------ccCCCCcHHHHHHHhhcc-----CC--cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 9999985 356678999999875321 11 1567889999999975 45778888 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 140 aL~~~p~ 146 (249)
T 2qi9_C 140 VVLQITP 146 (249)
T ss_dssp HHHHHCT
T ss_pred HHHcCCC
Confidence 9999987
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.86 E-value=1.1e-23 Score=152.66 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=90.0
Q ss_pred EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|+ +..+|++++ +++++|+|||||||||||++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence 4899999 9997 467888887 789999999999999999999999999999998866
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHH---HHhcCcc--------cCCCeeEEe
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDL---FSSVNLN--------VNNPHFLIM 145 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~---l~~~~l~--------~~~~~~l~~ 145 (159)
.|++++|++ .++..||.+|+.++.. + .. ...+++.+. ++.+++. ...+..+|+
T Consensus 67 ~i~~v~Q~~----------~~~~~tv~enl~~~~~--~--~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 130 (237)
T 2cbz_A 67 SVAYVPQQA----------WIQNDSLRENILFGCQ--L--EE--PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSG 130 (237)
T ss_dssp CEEEECSSC----------CCCSEEHHHHHHTTSC--C--CT--THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCH
T ss_pred EEEEEcCCC----------cCCCcCHHHHhhCccc--c--CH--HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCH
Confidence 289999985 2346799999988642 1 11 111222222 1222221 245678888
Q ss_pred -Ch---hHhHhhcCCCC
Q psy17514 146 -QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 -q~---~ia~~l~~~p~ 158 (159)
|+ +|||+|+.+|+
T Consensus 131 GqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 131 GQKQRVSLARAVYSNAD 147 (237)
T ss_dssp HHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 33 99999999996
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.86 E-value=3.8e-25 Score=162.88 Aligned_cols=143 Identities=10% Similarity=0.086 Sum_probs=99.9
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh--CCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVL--GIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ +.|+++.+|++++ |++++|+|||||||||||++|+|++ .|++|+|.++| .++.. .......+.
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g-~~i~~-~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLA-LSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT-EEGGG-SCHHHHHHH
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC-EECCc-CCHHHHhhC
Confidence 4899999 9998888899887 7899999999999999999999994 68899999987 33211 000001123
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceE---EEEC--CEEeCHHHHHHHHHhcCcc-c--C-CCe-eEEe-
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTR---YMIN--GSSVNPKRVSDLFSSVNLN-V--N-NPH-FLIM- 145 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~---~~~~--~~~~~~~~~~~~l~~~~l~-~--~-~~~-~l~~- 145 (159)
.|++++|++ .+++.+|+.+++.+..... +... ......+++.++++.++|. . + .+. .||+
T Consensus 98 ~i~~v~Q~~---------~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG 168 (267)
T 2zu0_C 98 GIFMAFQYP---------VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 168 (267)
T ss_dssp TEEEECSSC---------CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHH
T ss_pred CEEEEccCc---------cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence 489999986 4567778888775431100 0000 1111235678899999995 2 3 344 4888
Q ss_pred Ch---hHhHhhcCCCC
Q psy17514 146 QG---RVTKVLNMKPH 158 (159)
Q Consensus 146 q~---~ia~~l~~~p~ 158 (159)
|+ +|||+|+.+|+
T Consensus 169 q~QRv~iAraL~~~p~ 184 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPE 184 (267)
T ss_dssp HHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhCCC
Confidence 33 99999999996
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.85 E-value=4.4e-23 Score=148.76 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=90.5
Q ss_pred EEEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 4 KSMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 4 ~~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
..|+++|+ +.|+ +..+|++++ |++++|+|||||||||||++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 36999999 9995 467888887 789999999999999999999999999999998865
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
.|++++|++ .+++. ||.+|+.++.. + ...++.++++.+++.. ..+.
T Consensus 70 -~i~~v~q~~---------~~~~~-tv~enl~~~~~--~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 129 (229)
T 2pze_A 70 -RISFCSQFS---------WIMPG-TIKENIIFGVS--Y-------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 129 (229)
T ss_dssp -CEEEECSSC---------CCCSB-CHHHHHHTTSC--C-------CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCT
T ss_pred -EEEEEecCC---------cccCC-CHHHHhhccCC--c-------ChHHHHHHHHHhCcHHHHHhCcccccccccCCCC
Confidence 389999986 35564 99999987632 1 1122334444444321 1235
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.+|+ |+ +|||+++.+|+
T Consensus 130 ~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 130 TLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp TSCHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHHhcCCC
Confidence 7777 33 99999999996
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.85 E-value=9.1e-23 Score=164.52 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=102.8
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ ++|++ ..+|++++ |++++|+||||||||||+++|+|+++|++|+|.++| .++.... ....++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g-~~~~~~~--~~~~~~ 417 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG-HDVRDYK--LTNLRR 417 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC-EEhhhCC--HHHHhc
Confidence 4899999 99974 67888887 789999999999999999999999999999999988 4432211 112356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|++ .+++ .|+++|+.++.. .....+++.++++.+++.. +....
T Consensus 418 ~i~~v~Q~~---------~l~~-~tv~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 418 HFALVSQNV---------HLFN-DTIANNIAYAAE-------GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred CeEEEcCCC---------cccc-ccHHHHHhccCC-------CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence 799999986 3555 499999988631 1123567788888887753 12357
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +|||+++.+|+
T Consensus 481 LSgGq~qr~~iAral~~~p~ 500 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAP 500 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 777 43 99999999996
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=3.4e-24 Score=157.33 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=100.3
Q ss_pred EEEeCe-eeecC----CeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 6 MVLDGF-KSYGT----RVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 6 l~l~~~-~~~~~----~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
|+++|+ +.|++ +.+|++++ +++++|+|||||||||||++|+|++ |++|+|.++| .++.. . . .++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g-~~~~~--~--~-~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING-MEVRK--I--R-NYI 74 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETT-EEGGG--C--S-CCT
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECC-EECcc--h--H-Hhh
Confidence 789999 99976 67788776 7899999999999999999999999 9999999987 33221 1 1 245
Q ss_pred EEE-EEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---
Q psy17514 77 SVT-LTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG--- 147 (159)
Q Consensus 77 ~i~-~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~--- 147 (159)
.++ +++|++. + .+|+.+|+.+... . . ....+++.++++.++|. . ..+..||+ |+
T Consensus 75 ~i~~~v~Q~~~---------l--~~tv~enl~~~~~--~--~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv 137 (263)
T 2pjz_A 75 RYSTNLPEAYE---------I--GVTVNDIVYLYEE--L--K--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV 137 (263)
T ss_dssp TEEECCGGGSC---------T--TSBHHHHHHHHHH--H--T--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred heEEEeCCCCc---------c--CCcHHHHHHHhhh--h--c--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 699 9999852 3 5689999876422 1 0 22356789999999997 4 56778888 33
Q ss_pred hHhHhhcCCCC
Q psy17514 148 RVTKVLNMKPH 158 (159)
Q Consensus 148 ~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 138 ~lAraL~~~p~ 148 (263)
T 2pjz_A 138 RTSLALASQPE 148 (263)
T ss_dssp HHHHHHHTCCS
T ss_pred HHHHHHHhCCC
Confidence 99999999996
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.85 E-value=1.1e-23 Score=154.51 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=96.4
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ +.|++ ..+|++++ |++++|+||||||||||+++|+|++++ +|+|+++| .++.. .. ....+
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g-~~i~~-~~-~~~~~ 92 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGG-KNVNK-YN-RNSIR 92 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETT-EEGGG-BC-HHHHH
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECC-EEhhh-cC-HHHHh
Confidence 4899999 99975 35788887 789999999999999999999999987 79999987 33211 00 01124
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
+.|++++|++ .+++ .||.+|+.++.. . ...+++.++++.+++.. ..+.
T Consensus 93 ~~i~~v~Q~~---------~l~~-~tv~enl~~~~~------~--~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~ 154 (260)
T 2ghi_A 93 SIIGIVPQDT---------ILFN-ETIKYNILYGKL------D--ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGM 154 (260)
T ss_dssp TTEEEECSSC---------CCCS-EEHHHHHHTTCT------T--CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSB
T ss_pred ccEEEEcCCC---------cccc-cCHHHHHhccCC------C--CCHHHHHHHHHHhCCHHHHHhccccccccccCCcC
Confidence 5699999986 3555 599999987532 1 12355667777666532 2456
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.+|+ |+ +|||+|+.+|+
T Consensus 155 ~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 155 KLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp CCCHHHHHHHHHHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHHHHcCCC
Confidence 7877 33 99999999996
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.81 E-value=1.3e-22 Score=163.68 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=101.6
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ ++|++ ..+|++++ |++++|+||||||||||+++|+|+++|++|+|+++| .++.. .. ....++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g-~~~~~-~~-~~~~~~ 417 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG-HDLRE-YT-LASLRN 417 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT-EETTT-BC-HHHHHH
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC-EEccc-cC-HHHHHh
Confidence 4899999 99973 67888887 799999999999999999999999999999999988 33211 00 011345
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|++ .+++. |+++|+.++.. .....+++.++++.+++.. +....
T Consensus 418 ~i~~v~Q~~---------~l~~~-tv~eni~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~ 480 (582)
T 3b60_A 418 QVALVSQNV---------HLFND-TVANNIAYART-------EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480 (582)
T ss_dssp TEEEECSSC---------CCCSS-BHHHHHHTTTT-------SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCS
T ss_pred hCeEEccCC---------cCCCC-CHHHHHhccCC-------CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCC
Confidence 799999986 35654 99999988641 0123567788888877743 23467
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +|||+++.+|+
T Consensus 481 LSgGq~qrl~iAral~~~p~ 500 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSP 500 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 877 43 99999999996
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.81 E-value=1.8e-22 Score=163.12 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=101.4
Q ss_pred EEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 6 MVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 6 l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
|+++|+ ++|++ ..+|++++ |++++|+||||||||||+++|+|+++|++|+|.++| .++.. .. ....++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g-~~i~~-~~-~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG-HDIRQ-LN-PVWLRS 418 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETT-EETTT-BC-HHHHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC-EEhhh-CC-HHHHHh
Confidence 899999 99974 36888887 799999999999999999999999999999999988 33211 00 011345
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|++ .+++. |+++|+.++... ......+++.++++.+++.. +.+..
T Consensus 419 ~i~~v~Q~~---------~l~~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 419 KIGTVSQEP---------ILFSC-SIAENIAYGADD-----PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp SEEEECSSC---------CCCSS-BHHHHHHTTSSS-----TTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred ceEEEccCC---------cccCC-CHHHHHhhcCCC-----ccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 799999986 35554 999999886421 01134567888888887642 23367
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +|||+++.+|+
T Consensus 484 LSgGq~qrv~iAral~~~p~ 503 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPK 503 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 877 43 99999999996
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=4.1e-22 Score=160.82 Aligned_cols=133 Identities=12% Similarity=0.134 Sum_probs=98.3
Q ss_pred EEEEeCe-eeec--CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYG--TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~--~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ ++|+ +..+|+++| |++++|+||||||||||+++|+|+++|++|+|.++| .++... . ....++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g-~~i~~~-~-~~~~r~ 417 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE-LDVRTV-K-LKDLRG 417 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS-SBGGGB-C-HHHHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC-EEcccC-C-HHHHHh
Confidence 4899999 9995 456888887 799999999999999999999999999999999988 343211 1 111356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCc-----------cc---CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNL-----------NV---NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~---~~~~~ 142 (159)
.|++++|++ .+++ .|+++|+.++.. ....+++.+.++..++ +. +.+..
T Consensus 418 ~i~~v~Q~~---------~lf~-~tv~eni~~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~ 479 (587)
T 3qf4_A 418 HISAVPQET---------VLFS-GTIKENLKWGRE--------DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN 479 (587)
T ss_dssp HEEEECSSC---------CCCS-EEHHHHHTTTCS--------SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCS
T ss_pred heEEECCCC---------cCcC-ccHHHHHhccCC--------CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCC
Confidence 799999986 3565 499999988632 1233445555544433 22 45677
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +|||+++.+|+
T Consensus 480 LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 480 FSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp SCHHHHHHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHHHHHHcCCC
Confidence 888 44 99999999996
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.80 E-value=1.9e-22 Score=162.51 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=99.4
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEE
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKA 76 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 76 (159)
.|+++|+ ++|++ ..+|+++| |++++|+||||||||||+++|.|+++|++|+|.++| .++... . ....++
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g-~~~~~~-~-~~~~r~ 415 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG-HNIKDF-L-TGSLRN 415 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT-EEGGGS-C-HHHHHH
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC-EEhhhC-C-HHHHhh
Confidence 4899999 99964 46888887 799999999999999999999999999999999988 333111 1 112356
Q ss_pred EEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCee
Q psy17514 77 SVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHF 142 (159)
Q Consensus 77 ~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~ 142 (159)
.|++++|++ .+++. ||++|+.++.. ....+++.+.++.+++.. +....
T Consensus 416 ~i~~v~Q~~---------~l~~~-tv~eni~~~~~--------~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 416 QIGLVQQDN---------ILFSD-TVKENILLGRP--------TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp TEEEECSSC---------CCCSS-BHHHHHGGGCS--------SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred heEEEeCCC---------ccCcc-cHHHHHhcCCC--------CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 799999986 35655 99999988632 123456677777666532 12346
Q ss_pred EEe-Ch---hHhHhhcCCCC
Q psy17514 143 LIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 143 l~~-q~---~ia~~l~~~p~ 158 (159)
+|+ |+ +|||+++.+|+
T Consensus 478 LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 777 43 99999999996
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=2.1e-22 Score=162.81 Aligned_cols=133 Identities=12% Similarity=0.198 Sum_probs=98.8
Q ss_pred EEEEeCe-eeecC-CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEE
Q psy17514 5 SMVLDGF-KSYGT-RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKAS 77 (159)
Q Consensus 5 ~l~l~~~-~~~~~-~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 77 (159)
.|+++|+ ++|++ ..+|++++ |++++|+||||||||||+++|+|+++|++|+|.++| .++...+ ....++.
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g-~~i~~~~--~~~~r~~ 430 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG-IDIRKIK--RSSLRSS 430 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT-EEGGGSC--HHHHHHH
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC-EEhhhCC--HHHHHhc
Confidence 4899999 99964 56788877 799999999999999999999999999999999988 3332111 1123567
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCC-----------eeE
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNP-----------HFL 143 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~-----------~~l 143 (159)
|++++|++ .+++ .||++|+.++.. ....+++.+.++.+++.. ..| ..+
T Consensus 431 i~~v~Q~~---------~lf~-~tv~eni~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 431 IGIVLQDT---------ILFS-TTVKENLKYGNP--------GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp EEEECTTC---------CCCS-SBHHHHHHSSST--------TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred eEEEeCCC---------cccc-ccHHHHHhcCCC--------CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 99999986 3554 499999988632 112356667777766643 222 467
Q ss_pred Ee-Ch---hHhHhhcCCCC
Q psy17514 144 IM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 144 ~~-q~---~ia~~l~~~p~ 158 (159)
|+ |+ +|||+++.+|+
T Consensus 493 SgGq~Qrv~iAral~~~p~ 511 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPK 511 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 77 43 99999999996
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.77 E-value=1.5e-20 Score=139.70 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=77.8
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +. ...+|++++ |++++|+|||||||||||++|+|+++|++|+|.++| .|
T Consensus 40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----------------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------------RI 101 (290)
T ss_dssp ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----------------CE
T ss_pred eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----------------EE
Confidence 4788888 54 356778777 789999999999999999999999999999998865 38
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCeeEE
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPHFLI 144 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~~l~ 144 (159)
+|++|++ .+++. ||.+|+. +.. + ....+.++++.+++.. ..+..+|
T Consensus 102 ~~v~Q~~---------~l~~~-tv~enl~-~~~--~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LS 161 (290)
T 2bbs_A 102 SFCSQNS---------WIMPG-TIKENII-GVS--Y-------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 161 (290)
T ss_dssp EEECSSC---------CCCSS-BHHHHHH-TTC--C-------CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCC
T ss_pred EEEeCCC---------ccCcc-cHHHHhh-Ccc--c-------chHHHHHHHHHhChHHHHHhccccccchhcCccCcCC
Confidence 9999985 35554 8999987 421 1 1123344444444421 1235777
Q ss_pred e-Ch---hHhHhhcCCCC
Q psy17514 145 M-QG---RVTKVLNMKPH 158 (159)
Q Consensus 145 ~-q~---~ia~~l~~~p~ 158 (159)
+ |+ +|||+|+.+|+
T Consensus 162 gGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 162 GGQRARISLARAVYKDAD 179 (290)
T ss_dssp HHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 7 33 99999999996
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.76 E-value=9.2e-21 Score=164.17 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=103.4
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ .+|++ .++|+++| |+.++|+||||||||||+++|.+++.|++|+|.++| .++...+ ....|
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG-~di~~i~--~~~lR 1152 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDG-SEIKTLN--PEHTR 1152 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETT-EETTTBC--HHHHH
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECC-EEhhhCC--HHHHH
Confidence 4899999 99964 35889888 799999999999999999999999999999999998 3432111 11246
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
.+|++|+|+| .+|+. |+++||.++.. ....+.+++.++++..++.+ +.-.
T Consensus 1153 ~~i~~V~Qdp---------~LF~g-TIreNI~~gld------~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~ 1216 (1321)
T 4f4c_A 1153 SQIAIVSQEP---------TLFDC-SIAENIIYGLD------PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGT 1216 (1321)
T ss_dssp TTEEEECSSC---------CCCSE-EHHHHHSSSSC------TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC
T ss_pred hheEEECCCC---------EeeCc-cHHHHHhccCC------CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCc
Confidence 7899999997 35654 99999988742 12245678888888887743 1234
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.||+ |+ +||||+..+|+
T Consensus 1217 ~LSgGQrQriaiARAllr~~~ 1237 (1321)
T 4f4c_A 1217 QLSGGQKQRIAIARALVRNPK 1237 (1321)
T ss_dssp SSCHHHHHHHHHHHHHHSCCS
T ss_pred ccCHHHHHHHHHHHHHHhCCC
Confidence 5666 44 99999999986
No 46
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.74 E-value=1.8e-17 Score=129.34 Aligned_cols=147 Identities=32% Similarity=0.551 Sum_probs=96.5
Q ss_pred CeEEEEEEeCeeeecCCeeeecCC-CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCC--------
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFD-REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQA-------- 71 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~-------- 71 (159)
|.+..|+++||++|++...+ ++. +++++|+|||||||||||++|++++.+++..+|.....++++.+...
T Consensus 2 m~i~~l~~~~~~~~~~~~~~-~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~~~R~~~~~~lI~~g~~~~~~~~~~~ 80 (430)
T 1w1w_A 2 GRLVGLELSNFKSYRGVTKV-GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDYD 80 (430)
T ss_dssp CCEEEEEEESCSSCCSEEEE-ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---------CGGGSCCC-----------
T ss_pred CeeEEEEEeCEEEECCceeE-EecCCCEEEEECCCCCCHHHHHHHHHhhhccccccchhhhHHHHHhcCCccceeeEEec
Confidence 56889999999999775444 365 78999999999999999999999998876545544334444322100
Q ss_pred -------ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEE
Q psy17514 72 -------GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLI 144 (159)
Q Consensus 72 -------~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~ 144 (159)
......|...|+..+ ...++.+.+...+...+++|+.+...+++...++..++.......++
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~-----------~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~~i~~~~~~~~i 149 (430)
T 1w1w_A 81 NEGAASSNPQSAYVKAFYQKGN-----------KLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLV 149 (430)
T ss_dssp --------CCEEEEEEEEEETT-----------EEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTTEE
T ss_pred ccccccCCcccccceeeeccCC-----------cEEEEEEEEecCCceEEEECCEEccHHHHHHHHHhCCcCCCCcceee
Confidence 002344555554321 12456666655555578899998877788888887777655555577
Q ss_pred eChhHhHhhcCCCCC
Q psy17514 145 MQGRVTKVLNMKPHE 159 (159)
Q Consensus 145 ~q~~ia~~l~~~p~~ 159 (159)
.|+.+..++.++|.|
T Consensus 150 ~qg~~~~l~~~~p~e 164 (430)
T 1w1w_A 150 FQGDVEQIAAQSPVE 164 (430)
T ss_dssp CTTCTTHHHHSCHHH
T ss_pred ehHhHHHHHhCCHHH
Confidence 799888888877753
No 47
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.74 E-value=2.7e-17 Score=123.85 Aligned_cols=146 Identities=34% Similarity=0.600 Sum_probs=97.0
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chhhhhHHHHHHhhCC--CceeEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK-QVRANTLQELIYKNGQ--AGVTKAS 77 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~~~~~~~~~~~~~~--~~~~~~~ 77 (159)
|++..|+++||++|++...+ +++.++++|+|||||||||||++|+++++...+ +.+.....++++.+.. .......
T Consensus 1 M~l~~L~i~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~ 79 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAY 79 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEE
T ss_pred CeEeEEEEeCceeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEE
Confidence 89999999999999654444 577779999999999999999999999854322 2222221222221110 1124678
Q ss_pred EEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEeChhHhHhhcCCC
Q psy17514 78 VTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157 (159)
Q Consensus 78 i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~q~~ia~~l~~~p 157 (159)
|..+|+..+ ..+.+.+.+.......+++++.+.....+.+++..+++..+. ..+..||.+...+...|
T Consensus 80 v~~~f~~~~-----------~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~-~~lv~qg~i~~~~~~~p 147 (322)
T 1e69_A 80 VELVFEENG-----------EEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDF-YSIVGQGQIDRIVNASP 147 (322)
T ss_dssp EEEEEESSS-----------CEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTC-CSEEEHHHHHHHHTC--
T ss_pred EEEEEEeCC-----------eEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhh-eeeEehhhHHHHHhccH
Confidence 888998742 246777776655555788999888777788888777776533 35677998888887777
Q ss_pred CC
Q psy17514 158 HE 159 (159)
Q Consensus 158 ~~ 159 (159)
++
T Consensus 148 ~~ 149 (322)
T 1e69_A 148 EE 149 (322)
T ss_dssp --
T ss_pred HH
Confidence 53
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.72 E-value=8.9e-20 Score=158.07 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=102.0
Q ss_pred EEEEeCe-eeec---CCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYG---TRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~---~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ .+|+ +.++|+++| |+.++|+||+|||||||+++|.|+++|.+|+|.++| .++...+ ..+.+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG-~~i~~~~--~~~lr 491 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG-VDVRDIN--LEFLR 491 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT-EETTTSC--HHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC-ccchhcc--HHHHh
Confidence 4899999 9996 356888887 799999999999999999999999999999999988 3321101 12246
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
..|++|+|+| .+|. -|+++||.++.. ....+++.++++..++.. +.-.
T Consensus 492 ~~i~~v~Q~~---------~Lf~-~TI~eNI~~g~~--------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~ 553 (1321)
T 4f4c_A 492 KNVAVVSQEP---------ALFN-CTIEENISLGKE--------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGT 553 (1321)
T ss_dssp HHEEEECSSC---------CCCS-EEHHHHHHTTCT--------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSC
T ss_pred hcccccCCcc---------eeeC-CchhHHHhhhcc--------cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCC
Confidence 6799999996 2444 599999998732 235678888888876632 2345
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.||+ |+ +||||+..+|+
T Consensus 554 ~LSGGQkQRiaiARAl~~~~~ 574 (1321)
T 4f4c_A 554 QLSGGQKQRIAIARALVRNPK 574 (1321)
T ss_dssp CCCHHHHHHHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHccCCC
Confidence 6777 44 99999999986
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=3.7e-20 Score=160.08 Aligned_cols=133 Identities=15% Similarity=0.133 Sum_probs=97.8
Q ss_pred EEEEeCe-eeecC---CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGT---RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~---~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ ++|++ .++|++++ |++++|+||||||||||+++|.|+++|++|+|.++| .++...+ ....+
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g-~~i~~~~--~~~~r 463 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG-QDIRTIN--VRYLR 463 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETT-EEGGGSC--HHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EEHHhCC--HHHHH
Confidence 4899999 99964 35888887 799999999999999999999999999999999988 3332111 11235
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
+.|++|+|++ .+++. ||++|+.++.. ....+++.+.++..++.. +...
T Consensus 464 ~~i~~v~Q~~---------~l~~~-ti~eNi~~g~~--------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 525 (1284)
T 3g5u_A 464 EIIGVVSQEP---------VLFAT-TIAENIRYGRE--------DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525 (1284)
T ss_dssp HHEEEECSSC---------CCCSS-CHHHHHHHHCS--------SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSC
T ss_pred hheEEEcCCC---------ccCCc-cHHHHHhcCCC--------CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCC
Confidence 5799999996 35554 99999988632 123345555555443321 3456
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.||+ |+ +|||++..+|+
T Consensus 526 ~LSgGq~QriaiARal~~~p~ 546 (1284)
T 3g5u_A 526 QLSGGQKQRIAIARALVRNPK 546 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHHhcCCC
Confidence 7887 44 99999999986
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.71 E-value=8.1e-19 Score=141.83 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=90.5
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.++++|+ +.|++. .|..++ |++++|+|||||||||||++|+|++.|++|+|.+. ..|
T Consensus 357 ~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------------LTV 419 (607)
T ss_dssp EEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC----------------CCE
T ss_pred EEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe----------------eEE
Confidence 5889999 899775 355543 89999999999999999999999999999998751 248
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
+|++|++. ..+.+||.+++.......+ ...+.+.++++.++|.. ..+..||+ |+ +||+
T Consensus 420 ~~v~Q~~~---------~~~~~tv~e~~~~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAr 484 (607)
T 3bk7_A 420 AYKPQYIK---------AEYEGTVYELLSKIDSSKL------NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 484 (607)
T ss_dssp EEECSSCC---------CCCSSBHHHHHHHHHHHHH------HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHH
T ss_pred EEEecCcc---------CCCCCcHHHHHHhhhccCC------CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 99999852 3344677665533100000 12356788899999865 45678888 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 485 aL~~~p~ 491 (607)
T 3bk7_A 485 TLLRDAD 491 (607)
T ss_dssp HHTSCCS
T ss_pred HHHhCCC
Confidence 9999986
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=1.7e-19 Score=156.02 Aligned_cols=135 Identities=17% Similarity=0.193 Sum_probs=98.0
Q ss_pred EEEEeCe-eeecCC---eeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeE
Q psy17514 5 SMVLDGF-KSYGTR---VEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTK 75 (159)
Q Consensus 5 ~l~l~~~-~~~~~~---~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 75 (159)
.|+++|+ ++|++. ++|+++| |++++|+||||||||||+++|.|+++|++|+|.++| .++... . ....+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g-~~i~~~-~-~~~~r 1106 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDG-KEIKQL-N-VQWLR 1106 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSS-SCTTSS-C-HHHHT
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC-EEcccC-C-HHHHH
Confidence 4889999 999653 5788888 799999999999999999999999999999999988 333110 0 11235
Q ss_pred EEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--------------CCCe
Q psy17514 76 ASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--------------NNPH 141 (159)
Q Consensus 76 ~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------~~~~ 141 (159)
+.|++++|++ .+++ .||++|+.++.. ......+++.+.++..++.. +...
T Consensus 1107 ~~i~~v~Q~~---------~l~~-~ti~eNi~~~~~------~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1107 AQLGIVSQEP---------ILFD-CSIAENIAYGDN------SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp TSCEEEESSC---------CCCS-SBHHHHHTCCCS------SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSC
T ss_pred hceEEECCCC---------cccc-ccHHHHHhccCC------CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCC
Confidence 6799999996 2443 599999987632 11123455566665555432 2345
Q ss_pred eEEe-Ch---hHhHhhcCCCC
Q psy17514 142 FLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 142 ~l~~-q~---~ia~~l~~~p~ 158 (159)
.||+ |+ +|||++..+|+
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~ 1191 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPH 1191 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHHHcCCC
Confidence 6777 33 99999999986
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.68 E-value=1.6e-18 Score=138.47 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=89.7
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|+++|+ +.|++. .+..++ |++++|+||||||||||+++|+|+++|++|+|.+ ...|
T Consensus 287 ~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC----------------CCCE
T ss_pred EEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE----------------CceE
Confidence 5889999 889764 455543 8999999999999999999999999999999875 1248
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-Ch---hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-QG---RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q~---~ia~ 151 (159)
++++|++. ..+.+||.+++.......+ ...+.+.++++.+++.. ..+..||+ |+ +||+
T Consensus 350 ~~v~Q~~~---------~~~~~tv~~~~~~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAr 414 (538)
T 1yqt_A 350 AYKPQYIK---------ADYEGTVYELLSKIDASKL------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAA 414 (538)
T ss_dssp EEECSSCC---------CCCSSBHHHHHHHHHHHHH------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred EEEecCCc---------CCCCCcHHHHHHhhhccCC------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence 99999852 2344577555432100000 12356788899999865 45778888 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 415 aL~~~p~ 421 (538)
T 1yqt_A 415 TLLRDAD 421 (538)
T ss_dssp HHTSCCS
T ss_pred HHHhCCC
Confidence 9999986
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.67 E-value=3.6e-18 Score=136.42 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=90.2
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.++++++ +.|++.. +...+ +++++|+||||||||||+++|+|+++|++|+|.+.+ ..+
T Consensus 269 ~l~~~~l~~~~~~~~-l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGDFQ-LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK---------------QIL 332 (538)
T ss_dssp EEEECCEEEEETTEE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC---------------CCE
T ss_pred eEEEcceEEEECCEE-EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------------eee
Confidence 5789999 8998754 44332 899999999999999999999999999999997543 247
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe---Ch-hHhH
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM---QG-RVTK 151 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~---q~-~ia~ 151 (159)
++++|+.. .....||.+++...... + .......+.++++.++|.. ..+..||+ |+ +|||
T Consensus 333 ~~~~q~~~---------~~~~~tv~~~l~~~~~~-~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAr 398 (538)
T 3ozx_A 333 SYKPQRIF---------PNYDGTVQQYLENASKD-A----LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAA 398 (538)
T ss_dssp EEECSSCC---------CCCSSBHHHHHHHHCSS-T----TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHH
T ss_pred Eeechhcc---------cccCCCHHHHHHHhhhh-c----cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHH
Confidence 88888642 12245777776542110 0 0112345778889999875 56788888 33 9999
Q ss_pred hhcCCCC
Q psy17514 152 VLNMKPH 158 (159)
Q Consensus 152 ~l~~~p~ 158 (159)
+|+.+|+
T Consensus 399 aL~~~p~ 405 (538)
T 3ozx_A 399 TLAKEAD 405 (538)
T ss_dssp HHHSCCS
T ss_pred HHHcCCC
Confidence 9999996
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.67 E-value=9.5e-19 Score=141.41 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=85.1
Q ss_pred eCe-eeecCC-eeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch---------hhhhHHHHHHhhCCCce
Q psy17514 9 DGF-KSYGTR-VEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQV---------RANTLQELIYKNGQAGV 73 (159)
Q Consensus 9 ~~~-~~~~~~-~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i---------~~~~~~~~~~~~~~~~~ 73 (159)
+|+ ++|++. .++.+++ |++++|+|||||||||||++|+|++.|++|++ ++.| .++.........
T Consensus 95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G-~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG-NELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT-STHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC-Eehhhhhhhhhh
Confidence 899 999876 3788775 68999999999999999999999999999985 2333 111110000000
Q ss_pred eEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h
Q psy17514 74 TKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G 147 (159)
Q Consensus 74 ~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~ 147 (159)
.+..+++++|..... ...+.. |+.+++... ...+++.++++.++|.. ..+..||+ | +
T Consensus 174 ~~~~i~~~~q~~~~~-----~~~~~~-tv~e~l~~~-----------~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQR 236 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLL-----PKAVKG-KVRELLKKV-----------DEVGKFEEVVKELELENVLDRELHQLSGGELQR 236 (607)
T ss_dssp TSCCCEEECSCGGGG-----GGTCCS-BHHHHHHHT-----------CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHH
T ss_pred hhcceEEeechhhhc-----hhhccc-cHHHHhhhh-----------HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHH
Confidence 123466777653110 011111 444444221 11245788999999975 45778888 3 3
Q ss_pred -hHhHhhcCCCC
Q psy17514 148 -RVTKVLNMKPH 158 (159)
Q Consensus 148 -~ia~~l~~~p~ 158 (159)
+||++|+.+|+
T Consensus 237 vaIAraL~~~P~ 248 (607)
T 3bk7_A 237 VAIAAALLRKAH 248 (607)
T ss_dssp HHHHHHHHSCCS
T ss_pred HHHHHHHhcCCC
Confidence 99999999996
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.66 E-value=2.9e-18 Score=137.09 Aligned_cols=134 Identities=14% Similarity=0.094 Sum_probs=83.1
Q ss_pred EE-eCe-eeecCC-eeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch---------hhhhHHHHHHhhCC
Q psy17514 7 VL-DGF-KSYGTR-VEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQV---------RANTLQELIYKNGQ 70 (159)
Q Consensus 7 ~l-~~~-~~~~~~-~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i---------~~~~~~~~~~~~~~ 70 (159)
++ +|+ ++|++. .++.+++ |++++|+|||||||||||++|+|++.|++|++ .+.| .++......
T Consensus 22 ~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g-~~~~~~~~~ 100 (538)
T 1yqt_A 22 QLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG-NELQNYFEK 100 (538)
T ss_dssp --CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTT-STHHHHHHH
T ss_pred hHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCC-ccHHHHHHH
Confidence 44 588 999876 3788774 78999999999999999999999999999985 2333 111100000
Q ss_pred CceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C
Q psy17514 71 AGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q 146 (159)
Q Consensus 71 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q 146 (159)
....+..+++++|..... + ..+. .++.+++.. ....+++.++++.++|.. ..+..||+ |
T Consensus 101 ~~~~~~~~~~~~q~~~~~--~---~~~~-~~v~e~~~~-----------~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLI--P---KAVK-GKVIELLKK-----------ADETGKLEEVVKALELENVLEREIQHLSGGE 163 (538)
T ss_dssp HHTTSCCCEEECSCGGGS--G---GGCC-SBHHHHHHH-----------HCSSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred HHHHhhhhhhhhhhhhhc--c---hhhh-ccHHHHHhh-----------hhHHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence 000123467777753100 0 0111 133332211 111245788999999975 45678887 3
Q ss_pred h---hHhHhhcCCCC
Q psy17514 147 G---RVTKVLNMKPH 158 (159)
Q Consensus 147 ~---~ia~~l~~~p~ 158 (159)
+ +||++|+.+|+
T Consensus 164 kQRv~iAraL~~~P~ 178 (538)
T 1yqt_A 164 LQRVAIAAALLRNAT 178 (538)
T ss_dssp HHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhcCCC
Confidence 3 99999999996
No 56
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=99.63 E-value=8.5e-16 Score=103.67 Aligned_cols=134 Identities=23% Similarity=0.337 Sum_probs=82.6
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
|++..|+++||++|.+.. .+++.++++|+|||||||||+|++|+.++... .. +.....++++.+ .....|.
T Consensus 1 M~i~~l~i~nf~~~~~~~--i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~~--r~~~~~~~~~~~----~~~~~v~ 72 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTV--VEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRI--KDIKKDEFTKVG----ARDTYID 72 (149)
T ss_dssp CEEEEEEEESBTTBSSEE--EECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSCC--TTSSCCCSCSTT----CCCEEEE
T ss_pred CEEEEEEEeCcccCcceE--EEcCCCeEEEECCCCCCHHHHHHHHHHHHcCCccc--ccCCHHHheecC----CCcEEEE
Confidence 889999999999997754 35778899999999999999999999877322 11 111111222211 1346777
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEcCC-ceEEE--EC--C---EEe--CH-HHHHHHHHhcCcccCC--CeeEEeC
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISIPS-NTRYM--IN--G---SSV--NP-KRVSDLFSSVNLNVNN--PHFLIMQ 146 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~-~~~~~--~~--~---~~~--~~-~~~~~~l~~~~l~~~~--~~~l~~q 146 (159)
+.|...+ ..+++.+.+.... ...+. .+ + ... .. +++.+.++.+ ++.+. ...++.|
T Consensus 73 ~~f~~~~-----------~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~Q 140 (149)
T 1f2t_A 73 LIFEKDG-----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQ 140 (149)
T ss_dssp EEEEETT-----------EEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECT
T ss_pred EEEEECC-----------EEEEEEEEEcCCCCceEEEEEeccCCCceEEcccCchHHHHHHHHHH-cCHHHhhheEEEcC
Confidence 7776532 2356777665411 22333 34 4 221 24 6777777765 54321 1235679
Q ss_pred hhHhHhhc
Q psy17514 147 GRVTKVLN 154 (159)
Q Consensus 147 ~~ia~~l~ 154 (159)
|.+++++.
T Consensus 141 G~~~~~l~ 148 (149)
T 1f2t_A 141 GQIDAILE 148 (149)
T ss_dssp THHHHHTC
T ss_pred cCHHHHhh
Confidence 99888774
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.63 E-value=4.1e-17 Score=136.93 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=50.0
Q ss_pred EEEEeCe-eeecC--CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 5 SMVLDGF-KSYGT--RVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 5 ~l~l~~~-~~~~~--~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
.|+++|+ +.|++ +.+|.++| |++++|+||||||||||+++|+|++.|++|+|++.+
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 4899999 99965 56788887 799999999999999999999999999999998753
No 58
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=99.60 E-value=9.5e-15 Score=103.27 Aligned_cols=137 Identities=21% Similarity=0.358 Sum_probs=87.5
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|++..|+++||++|.+.. + +++..+++|+|||||||||++++|..++.... ..+.....++++.+. ....|.+
T Consensus 1 M~i~~l~i~nf~~~~~~~-i-~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~-~~r~~~~~~~i~~~~----~~~~v~l 73 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPL-RIKDIKKDEFTKVGA----RDTYIDL 73 (203)
T ss_dssp CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHTTS-CCTTCCHHHHHTSCS----SCEEEEE
T ss_pred CEEEEEEEECCcCccceE-E-EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCc-ccccccchhhhccCC----CcEEEEE
Confidence 889999999999998754 3 57788999999999999999999998886431 112222245554322 3567888
Q ss_pred EEEcCCCCCCCCCccCCCeEEEEEEEEcCC---ce---EEEECCEEe-----CHHHHHHHHHhc-CcccCCCeeEEeChh
Q psy17514 81 TFDNSDKKNCPIGYENDNTIVICRQISIPS---NT---RYMINGSSV-----NPKRVSDLFSSV-NLNVNNPHFLIMQGR 148 (159)
Q Consensus 81 v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~---~~---~~~~~~~~~-----~~~~~~~~l~~~-~l~~~~~~~l~~q~~ 148 (159)
.|...+ ..+++.+.+..+. .. .+..++... ..+.+.+.+..+ +........++.||.
T Consensus 74 ~f~~~~-----------~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~ll~~~~f~~~~~l~Qg~ 142 (203)
T 3qks_A 74 IFEKDG-----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQ 142 (203)
T ss_dssp EEEETT-----------EEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHTTEECTTH
T ss_pred EEEECC-----------EEEEEEEEEEcCCCCCccceEEEEcCCceeeeccCChHHHHHHHHHHcCHHHhhEEEEEcCCc
Confidence 887642 2356777766543 11 244455211 234666666554 332212234677998
Q ss_pred HhHhhcC
Q psy17514 149 VTKVLNM 155 (159)
Q Consensus 149 ia~~l~~ 155 (159)
+..++..
T Consensus 143 ~~~~l~~ 149 (203)
T 3qks_A 143 IDAILES 149 (203)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 8877754
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=7.5e-16 Score=124.48 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=71.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEE
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQ 105 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~ 105 (159)
++++|+||||||||||+++|+|+++|++|+.. ....+++++|+.. .....||.++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~----------------~~~~i~~~~q~~~---------~~~~~tv~e~ 433 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDI----------------PKLNVSMKPQKIA---------PKFPGTVRQL 433 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC----------------CSCCEEEECSSCC---------CCCCSBHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc----------------cCCcEEEeccccc---------ccCCccHHHH
Confidence 78999999999999999999999999988621 1235889988742 1112355554
Q ss_pred EEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEe-C--h-hHhHhhcCCCC
Q psy17514 106 ISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIM-Q--G-RVTKVLNMKPH 158 (159)
Q Consensus 106 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~-q--~-~ia~~l~~~p~ 158 (159)
+..... +.......+.++++.++|.. ..+..||+ | + +|||+|+.+|+
T Consensus 434 ~~~~~~------~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~ 487 (608)
T 3j16_B 434 FFKKIR------GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPAD 487 (608)
T ss_dssp HHHHCS------STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCS
T ss_pred HHHHhh------cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 432110 11112356678888888865 56788888 3 3 99999999996
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.49 E-value=3.2e-15 Score=125.55 Aligned_cols=120 Identities=15% Similarity=0.194 Sum_probs=84.0
Q ss_pred EEEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
.|...|+ +.|+++.+|++++ |++++|+|||||||||||++|++ |.+ .+. + .. . ..++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~-~----~~-~---~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGF-P----TQ-E---ECRT 497 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTC-C----CT-T---TSCE
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCC-c----cc-c---ceeE
Confidence 4666689 9999888899887 78999999999999999999995 443 120 0 00 0 1124
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc-c---CCCeeEEe-Ch---hHh
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN-V---NNPHFLIM-QG---RVT 150 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~---~~~~~l~~-q~---~ia 150 (159)
++++|+.. .+++.+|+.+++.+.. .+. .+++.++++.++|. . ..+..||+ |+ +||
T Consensus 498 ~~v~q~~~--------~~~~~ltv~e~l~~~~------~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLA 560 (986)
T 2iw3_A 498 VYVEHDID--------GTHSDTSVLDFVFESG------VGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALA 560 (986)
T ss_dssp EETTCCCC--------CCCTTSBHHHHHHTTC------SSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHH
T ss_pred EEEccccc--------ccccCCcHHHHHHHhh------cCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHH
Confidence 56655421 2455668888775411 011 57789999999994 2 45678888 33 999
Q ss_pred HhhcCCCC
Q psy17514 151 KVLNMKPH 158 (159)
Q Consensus 151 ~~l~~~p~ 158 (159)
++|+.+|+
T Consensus 561 rAL~~~P~ 568 (986)
T 2iw3_A 561 RAVLRNAD 568 (986)
T ss_dssp HHHHTTCS
T ss_pred HHHhcCCC
Confidence 99999996
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7.1e-16 Score=124.64 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=38.3
Q ss_pred Ce-eeecCCe-eeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514 10 GF-KSYGTRV-EINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQV 56 (159)
Q Consensus 10 ~~-~~~~~~~-~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i 56 (159)
++ ++|+... .+..++ |++++|+|||||||||||++|+|++.|+.|++
T Consensus 82 ~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp TEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 45 6665432 344433 89999999999999999999999999999988
No 62
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.48 E-value=4.2e-14 Score=108.38 Aligned_cols=137 Identities=26% Similarity=0.360 Sum_probs=82.9
Q ss_pred eEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 2 YIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 2 ~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
.+..|+++||++|.+.. .+++.++++|+|||||||||+|+||+.++... .+.....++++.+. ....|..+
T Consensus 4 ~l~~L~l~nFr~~~~~~--i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~---~r~~~~~~~ir~g~----~~~~V~~~ 74 (371)
T 3auy_A 4 ILKEIRMNNFKSHVNSR--IKFEKGIVAIIGENGSGKSSIFEAVFFALFGA---GSNFNYDTIITKGK----KSVYVELD 74 (371)
T ss_dssp EEEEEEEEEETTEEEEE--EECCSEEEEEEECTTSSHHHHHHHHHHHHHCC---C-CCCTTTTBCTTC----SEEEEEEE
T ss_pred EEeEEEEEccccccceE--EecCCCeEEEECCCCCCHHHHHHHHHHHHcCC---CCccchHhhccCCC----CcEEEEEE
Confidence 35689999999996543 35888999999999999999999999854322 11111123333222 35678888
Q ss_pred EEcCCCCCCCCCccCCCeEEEEEEEEcCC-ceEEEECCEEeC--HHHHHHHH-HhcCcccC--CCeeEEeChhHhHhhcC
Q psy17514 82 FDNSDKKNCPIGYENDNTIVICRQISIPS-NTRYMINGSSVN--PKRVSDLF-SSVNLNVN--NPHFLIMQGRVTKVLNM 155 (159)
Q Consensus 82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~-~~~~~~~~~~~~--~~~~~~~l-~~~~l~~~--~~~~l~~q~~ia~~l~~ 155 (159)
|...+ ..+.+.+...-+. ...+++|+.... .+++.+.+ +.+|++.+ .+..+.+|+++...+..
T Consensus 75 f~~~~-----------~~~~i~r~~~~g~~~~~~~~ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~ 143 (371)
T 3auy_A 75 FEVNG-----------NNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSL 143 (371)
T ss_dssp EEETT-----------EEEEEEEEEETTEEEEEEEETTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHS
T ss_pred EEECC-----------EEEEEEEEEcCCCCceEEEECCEeecccHHHHHHHHHHHhCcCHHHhCceeeecCccHHHHHhc
Confidence 87532 1245544422211 113567876543 23555544 44677652 23445568877777766
Q ss_pred CCC
Q psy17514 156 KPH 158 (159)
Q Consensus 156 ~p~ 158 (159)
+|+
T Consensus 144 ~~~ 146 (371)
T 3auy_A 144 KPS 146 (371)
T ss_dssp CHH
T ss_pred CHH
Confidence 664
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.2e-15 Score=121.87 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV 56 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i 56 (159)
|++++|+|||||||||||++|+|++.|+.|++
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 79999999999999999999999999999988
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.46 E-value=1.7e-15 Score=123.94 Aligned_cols=134 Identities=10% Similarity=0.155 Sum_probs=53.6
Q ss_pred CeeeecCC-----CCeEEEEcCCCCcHHHHH---------------------HHHHHHhCCcccch-------hhhhHHH
Q psy17514 17 RVEINDFD-----REFNAITGLNGTGKSNIL---------------------DGICFVLGIQVKQV-------RANTLQE 63 (159)
Q Consensus 17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl---------------------~~i~~~~~~~~g~i-------~~~~~~~ 63 (159)
..+|+++| +++++|+||||||||||+ +.+.++..|+.|.+ .+.+ .+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~-~~ 109 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ-KT 109 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS-CC
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC-ch
Confidence 34567776 799999999999999998 78888888774433 2222 11
Q ss_pred HHHhhC-------CC----ceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeC------HHHH
Q psy17514 64 LIYKNG-------QA----GVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVN------PKRV 126 (159)
Q Consensus 64 ~~~~~~-------~~----~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~------~~~~ 126 (159)
...... +. ......+++++|... ...++.+||.+|+.+.............. ..+.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~-------~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKH-------IGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR 182 (670)
T ss_dssp -----CCBHHHHTTCC--------------------------------CC--------------------------CHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccc-------cccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Confidence 000000 00 001122333333221 12345678899987642110000000000 0122
Q ss_pred HHHHHhcCccc----CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 127 SDLFSSVNLNV----NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 127 ~~~l~~~~l~~----~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
.++++.++|.. ..+..||+ |+ +|||+|+.+|+
T Consensus 183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~ 222 (670)
T 3ux8_A 183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLT 222 (670)
T ss_dssp HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCC
Confidence 34588888863 45678888 33 99999999986
No 65
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.45 E-value=2.6e-14 Score=105.15 Aligned_cols=68 Identities=9% Similarity=0.120 Sum_probs=41.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEEE
Q psy17514 28 NAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQIS 107 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i~ 107 (159)
++|+||||||||||+++|+|+..|+.|++.+.| .++ . ....++.+++++|++ .+++.+||.+++.
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g-~~i----~-~~~~~~~i~~v~q~~---------~~~~~ltv~d~~~ 69 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE-EKI----P-KTVEIKAIGHVIEEG---------GVKMKLTVIDTPG 69 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC-------------C----C-CCCSCCEEEESCC-------------CCEEEEECCCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccccCC-ccc----C-cceeeeeeEEEeecC---------CCcCCceEEechh
Confidence 689999999999999999999999999999887 332 1 112356799999975 4778899999998
Q ss_pred cCC
Q psy17514 108 IPS 110 (159)
Q Consensus 108 ~~~ 110 (159)
++.
T Consensus 70 ~g~ 72 (270)
T 3sop_A 70 FGD 72 (270)
T ss_dssp --C
T ss_pred hhh
Confidence 864
No 66
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.43 E-value=7.1e-15 Score=105.50 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=52.9
Q ss_pred CeEEEEEEeCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhC------CCce
Q psy17514 1 MYIKSMVLDGF-KSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG------QAGV 73 (159)
Q Consensus 1 m~~~~l~l~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~------~~~~ 73 (159)
|++..|+++|| ..++. . .++..++++|+|||||||||||++|+|++.|++|.|.+++ .++..... ....
T Consensus 5 ~k~~~l~l~~~~~~~~~-~--~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~~ 80 (227)
T 1qhl_A 5 GKFRSLTLINWNGFFAR-T--FDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN-TTEAGATSGSRDKGLHGK 80 (227)
T ss_dssp CEEEEEEEEEETTEEEE-E--ECHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------------------CGGG
T ss_pred ceeeEEEEEeeecccCC-E--EEEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC-EEcccCCccccccchhhH
Confidence 67889999999 54443 2 2344578999999999999999999999999999999887 34311110 1111
Q ss_pred eEEEEEEEEEc
Q psy17514 74 TKASVTLTFDN 84 (159)
Q Consensus 74 ~~~~i~~v~q~ 84 (159)
.+..+++++|.
T Consensus 81 ~~~~i~~v~~~ 91 (227)
T 1qhl_A 81 LKAGVCYSMLD 91 (227)
T ss_dssp BCSSEEEEEEE
T ss_pred hhcCcEEEEEe
Confidence 24568999974
No 67
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.41 E-value=9.4e-15 Score=99.43 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=58.6
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEE
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVT 79 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~ 79 (159)
++..++ +.|++..++.+++ +++++|+||||||||||+++|+|++ |++|+|.+.+ .++.. ....+ .
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g-~~i~~-----~~~~~--~ 78 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT-YTLVE-----EYNIA--G 78 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT-TTCEE-----EEEET--T
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC-Eeeee-----eccCC--C
Confidence 334456 7787766677643 7899999999999999999999999 8999998877 22210 00111 2
Q ss_pred EEEEcCCCCCCCCCccCCCeEEEEEEEEc
Q psy17514 80 LTFDNSDKKNCPIGYENDNTIVICRQISI 108 (159)
Q Consensus 80 ~v~q~~~~~~~~~~~~~~~~~tv~~~i~~ 108 (159)
+++|+. .++ .+|+.+++.+
T Consensus 79 ~~~q~~---------~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 79 KMIYHF---------DLY-RLADPEELEF 97 (158)
T ss_dssp EEEEEE---------ECT-TCSCTTHHHH
T ss_pred cceecc---------ccc-cCCcHHHHHH
Confidence 677763 355 5677777743
No 68
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.40 E-value=3.2e-13 Score=102.29 Aligned_cols=78 Identities=26% Similarity=0.414 Sum_probs=55.5
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|++.+|+++||++|.+.. .+++.++++|+|||||||||||+||++.+... ...+.....++++.+ .....|.+
T Consensus 1 M~i~~l~l~nF~~~~~~~--i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~-~~~~~~~~~~~~~~~----~~~~~v~~ 73 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTV--VEFKEGINLIIGQNGSGKSSLLDAILVGLYWP-LRIKDIKKDEFTKVG----ARDTYIDL 73 (339)
T ss_dssp CEEEEEEEEEETTEEEEE--EECCSEEEEEECCTTSSHHHHHHHHHHHHHCS-CCCTTCCHHHHBCTT----CSEEEEEE
T ss_pred CeEEEEEEEcccCccCeE--EcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC-cccCcCCHHHHhcCC----CCeEEEEE
Confidence 889999999999998754 35778999999999999999999997766432 122222223433322 24567888
Q ss_pred EEEcC
Q psy17514 81 TFDNS 85 (159)
Q Consensus 81 v~q~~ 85 (159)
+|+..
T Consensus 74 ~~~~~ 78 (339)
T 3qkt_A 74 IFEKD 78 (339)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88764
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.39 E-value=1.1e-12 Score=101.64 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=72.1
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|++..|+++||+.|.+.. ..++.++++|+|||||||||||++|++++.+.++. ++++.+. ....|..
T Consensus 38 m~l~~L~i~nf~~l~~v~--l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~~~~~-------~~i~~g~----~~~~v~~ 104 (415)
T 4aby_A 38 PRLSRLEIRNLATITQLE--LELGGGFCAFTGETGAGKSIIVDALGLLLGGRANH-------DLIRSGE----KELLVTG 104 (415)
T ss_dssp CCCCEEEEEEETTEEEEE--EECCSSEEEEEESHHHHHHHHTHHHHHHTTCCCCG-------GGBCTTC----SEEEEEE
T ss_pred cEeeeehhccccceeeEE--EecCCCcEEEECCCCCCHHHHHHHHHHHhCCCccH-------HHhcCCC----CeEEEEE
Confidence 667789999997776554 34665599999999999999999999999876432 2222122 3455666
Q ss_pred EE-EcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHh
Q psy17514 81 TF-DNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSS 132 (159)
Q Consensus 81 v~-q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (159)
.| +.++ .....+.+.+..+....+++++.+.....+.++...
T Consensus 105 ~~~~~~~----------~~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~ 147 (415)
T 4aby_A 105 FWGDGDE----------SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQG 147 (415)
T ss_dssp EC------------------CEEEEEEETTSCEEEEETTEEECHHHHHHHHTT
T ss_pred EEEecCC----------CceEEEEEEEecCCceEEEECCEECCHHHHHHHHhh
Confidence 66 3321 122456666666666678889988776556655543
No 70
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.39 E-value=7.4e-13 Score=105.45 Aligned_cols=110 Identities=19% Similarity=0.278 Sum_probs=78.1
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|++..|+++||+.|.+.. .+++.++++|+|+|||||||||++|++++...+. .++++.+. ..+.|..
T Consensus 38 M~l~~L~i~nf~~~~~~~--l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~-------~~~i~~g~----~~a~v~~ 104 (517)
T 4ad8_A 38 PRLSRLEIRNLATITQLE--LELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN-------HDLIRSGE----KELLVTG 104 (517)
T ss_dssp CCCCEEEEESBTTBSCEE--EECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC-------GGGBCTTC----SEEEEEE
T ss_pred ceeeeeecccccceeeEE--EecCCCeEEEEcCCCCCHHHHHHHHHHHhcCCcH-------HHHhcCCC----CcEEEEE
Confidence 778899999999998755 3577789999999999999999999999876521 12332222 3567887
Q ss_pred EE-EcCCCCCCCCCccCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhc
Q psy17514 81 TF-DNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSV 133 (159)
Q Consensus 81 v~-q~~~~~~~~~~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (159)
+| ...+ ...+.+.+.+...+++.+++|+.+.....+.++...+
T Consensus 105 ~f~~~~~----------~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~l 148 (517)
T 4ad8_A 105 FWGDGDE----------SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGR 148 (517)
T ss_dssp EC------------------CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTT
T ss_pred EEEecCC----------CCeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhhh
Confidence 77 5421 1234677777776667789999888776677766543
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.36 E-value=2.9e-13 Score=104.85 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=69.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEEEE
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQI 106 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~~i 106 (159)
+++|+||||||||||+++|+|+..|+.|++.+.+ .+.. + .++++|.+ .++.+++.+++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t---------~--~~~v~q~~----------~~~~ltv~D~~ 128 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVT---------M--ERHPYKHP----------NIPNVVFWDLP 128 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC--------------C--CCEEEECS----------SCTTEEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecc---------e--eEEecccc----------ccCCeeehHhh
Confidence 9999999999999999999999999999998877 2210 1 15688873 45678999987
Q ss_pred EcCCceEEEECCEEeCHHHHHHHHHhcCccc-CCCeeEEeC---h---hHhHhhcC
Q psy17514 107 SIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-NNPHFLIMQ---G---RVTKVLNM 155 (159)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~l~~q---~---~ia~~l~~ 155 (159)
.++. ...++.++++.+++.. +....+++. + .+|+++..
T Consensus 129 g~~~-----------~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 129 GIGS-----------TNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp CGGG-----------SSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH
T ss_pred cccc-----------hHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHh
Confidence 6642 1235778899888875 322235552 2 88888876
No 72
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.2e-16 Score=123.02 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=73.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCccc-c-hhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVK-Q-VRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVI 102 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~-i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv 102 (159)
|++++|+||||||||||+++|+|+..++.| + +++++ + .++.+++++|.... +.+++.+++
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg--~----------~~~~i~~vpq~~~l------~~~~~~~tv 199 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL--D----------PQQPIFTVPGCISA------TPISDILDA 199 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC--C----------TTSCSSSCSSCCEE------EECCSCCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC--C----------ccCCeeeeccchhh------cccccccch
Confidence 799999999999999999999999999999 8 88876 1 12346777776310 012334466
Q ss_pred EEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc-CCCeeEEe-Ch---hHhHh--hcCCCC
Q psy17514 103 CRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV-NNPHFLIM-QG---RVTKV--LNMKPH 158 (159)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~l~~-q~---~ia~~--l~~~p~ 158 (159)
.+|+ ++... . .+. ...+++.++++.+++.. ..+..||+ |+ ++|++ |+.+|+
T Consensus 200 ~eni-~~~~~--~-~~~-~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~ 257 (460)
T 2npi_A 200 QLPT-WGQSL--T-SGA-TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQ 257 (460)
T ss_dssp TCTT-CSCBC--B-SSC-CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhh-ccccc--c-cCc-chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcc
Confidence 6666 54321 0 111 11234556778888865 23667777 33 88888 888774
No 73
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.33 E-value=5.3e-14 Score=99.81 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=69.0
Q ss_pred eeecCCeeeecCC-CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCC
Q psy17514 12 KSYGTRVEINDFD-REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNC 90 (159)
Q Consensus 12 ~~~~~~~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 90 (159)
++|+++.+|+++. +++++|+|||||||||||++|+|+ .|++|+|.... + . ... ...++.+++++|++
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~---~-~-~~~-~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRII---L-T-RPA-VEAGEKLGFLPGTL----- 75 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEE---E-E-ECS-CCTTCCCCSSCC-------
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEE---e-c-CCc-hhhhcceEEecCCH-----
Confidence 5677777788776 899999999999999999999999 99999985321 0 0 110 11234577877763
Q ss_pred CCCccCCCeEEEEEEE-EcCCceEEEECCEEeCHHHHHHHHHhcCcccCCCeeEEe--Ch-hHhHhhcCCCC
Q psy17514 91 PIGYENDNTIVICRQI-SIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIM--QG-RVTKVLNMKPH 158 (159)
Q Consensus 91 ~~~~~~~~~~tv~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~--q~-~ia~~l~~~p~ 158 (159)
.+|+ .+.......... ....+++.++++. ++ + |+ +|||+|+.+|+
T Consensus 76 ------------~enl~~~~~~~~~~~~~-~~~~~~~~~~l~~-gl---------Gq~qrv~lAraL~~~p~ 124 (208)
T 3b85_A 76 ------------NEKIDPYLRPLHDALRD-MVEPEVIPKLMEA-GI---------VEVAPLAYMRGRTLNDA 124 (208)
T ss_dssp ----------------CTTTHHHHHHHTT-TSCTTHHHHHHHT-TS---------EEEEEGGGGTTCCBCSE
T ss_pred ------------HHHHHHHHHHHHHHHHH-hccHHHHHHHHHh-CC---------chHHHHHHHHHHhcCCC
Confidence 3444 221000000001 0123467777777 55 6 33 99999999985
No 74
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.32 E-value=3.7e-14 Score=106.35 Aligned_cols=101 Identities=12% Similarity=-0.002 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICR 104 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv~~ 104 (159)
+++++|+||||||||||+++|++++.|..|. ..+++++|++ .+++. |+.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------------------~~v~~v~qd~---------~~~~~-t~~e 139 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHH--------------------PRVDLVTTDG---------FLYPN-AELQ 139 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTC--------------------CCEEEEEGGG---------GBCCH-HHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCC--------------------CeEEEEecCc---------cCCcc-cHHH
Confidence 6899999999999999999999999876331 3488999984 35565 7777
Q ss_pred EEEcCCceEEEECCEEeCHHHHHHHHHhcCccc--CCCeeEEe-Ch---hHhHhhcCCCC
Q psy17514 105 QISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV--NNPHFLIM-QG---RVTKVLNMKPH 158 (159)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~l~~-q~---~ia~~l~~~p~ 158 (159)
|+.+... +. .......+.+.++++.++-.. ..+..+|+ |+ .+|++++.+|+
T Consensus 140 ~~~~~~~--~g-~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ 196 (312)
T 3aez_A 140 RRNLMHR--KG-FPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPD 196 (312)
T ss_dssp HTTCTTC--TT-SGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred HHHHHHh--cC-CChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCC
Confidence 7654211 00 011223466778888776221 23556666 43 78888888875
No 75
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.32 E-value=8.1e-14 Score=104.01 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh---hhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCC---C----c
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA---NTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPI---G----Y 94 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~---~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~---~----~ 94 (159)
+++++|+|||||||||||++|+|+..|+.|++.+ .| +++.. .. .....+.+++++|.|+...... . +
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g-~~~t~-~~-~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~ 245 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRG-RHTTT-TA-QLLKFDFGGYVVDTPGFANLEINDIEPEELK 245 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC--------------CCC-SC-CEEECTTSCEEESSCSSTTCCCCSSCHHHHG
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCC-CCcee-ee-EEEEcCCCCEEEECcCCCccCCCcCCHHHHH
Confidence 6899999999999999999999999999999988 55 33211 11 1111124789999875322111 0 2
Q ss_pred cCCCeEEEEEEEEcCCceEEEECCEEeCHHHHHHHHHhcCcc
Q psy17514 95 ENDNTIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLN 136 (159)
Q Consensus 95 ~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 136 (159)
.+++++++ +|+.++.. . .......++.++++.++|.
T Consensus 246 ~l~~~~~~-~n~~~~~~---~--~~~e~~~~v~~~l~~~~L~ 281 (301)
T 1u0l_A 246 HYFKEFGD-KQCFFSDC---N--HVDEPECGVKEAVENGEIA 281 (301)
T ss_dssp GGSTTSSS-CCCSSTTC---C--SSSCSSCHHHHHHHHTSSC
T ss_pred HHHHhccc-ccCcCCCC---c--CCCCCCcHHHHHHHcCCCC
Confidence 46888899 99988632 1 1223346789999999995
No 76
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.30 E-value=9.4e-12 Score=94.85 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=53.9
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEE
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTL 80 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~ 80 (159)
|.+..|++.||+.|.+.. ..++.++++|+|||||||||||++|+++.... .+.....++++.+. ....|..
T Consensus 4 M~i~~L~l~~~~~~~~~~--~~~~~g~~~i~G~nG~GKttll~ai~~~~~g~---~R~~~~~~lI~~g~----~~~~V~~ 74 (359)
T 2o5v_A 4 VRLSALSTLNYRNLAPGT--LNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ---TDAPRIEQLIQAGE----TEAYVRA 74 (359)
T ss_dssp CCEEEEEEESBTTCCSEE--EECCSEEEEEECCTTSSHHHHHHHHHHHHHSC---CCCSSGGGGBCTTC----SCEEEEE
T ss_pred cEEeEEEEeCccceeeeE--EEEcCCeEEEECCCCCChhHHHHHHHHhccCC---CCCCCHHHHhccCC----CcEEEEE
Confidence 678899999998886644 35666699999999999999999999886432 33333345554333 2456777
Q ss_pred EEEc
Q psy17514 81 TFDN 84 (159)
Q Consensus 81 v~q~ 84 (159)
.++.
T Consensus 75 ~~~~ 78 (359)
T 2o5v_A 75 DLQQ 78 (359)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6765
No 77
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.25 E-value=3.1e-13 Score=96.53 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhCC--cccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEE
Q psy17514 24 DREFNAITGLNGTGKSNILDGICFVLGI--QVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIV 101 (159)
Q Consensus 24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~t 101 (159)
.+++++|+||||||||||+++|+++.+| ..|.+.+.+. .. ....+..++|+||.+ ..|+.++
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr------~~-~~~e~~gi~y~fq~~---------~~f~~~~ 78 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR------QP-RPGEVHGEHYFFVNH---------DEFKEMI 78 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECS------CC-CTTCCBTTTBEECCH---------HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCC------CC-CcccccCceEEECCH---------HHHHHHH
Confidence 3889999999999999999999999986 5777777651 11 111235688999874 3455555
Q ss_pred E----EEEEEcCCc
Q psy17514 102 I----CRQISIPSN 111 (159)
Q Consensus 102 v----~~~i~~~~~ 111 (159)
+ .+++.+.+.
T Consensus 79 ~~~~f~E~~~~~~~ 92 (219)
T 1s96_A 79 SRDAFLEHAEVFGN 92 (219)
T ss_dssp HTTCEEEEEEETTE
T ss_pred hcCHHHHHHHHHhc
Confidence 5 788877543
No 78
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=3.8e-12 Score=98.73 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=54.6
Q ss_pred EEEeCeeeecCCeeeecCC-----CCe--EEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEE
Q psy17514 6 MVLDGFKSYGTRVEINDFD-----REF--NAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASV 78 (159)
Q Consensus 6 l~l~~~~~~~~~~~l~~~~-----~~~--~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i 78 (159)
|++.+-+.|++.+ +.+++ |++ ++|+||||||||||+++|+|+. +.+ .++.. .. ....+..+
T Consensus 17 l~~~~~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g-~~~~~-~~-~~~~~~~i 84 (427)
T 2qag_B 17 VPLAGHVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEG-EPATH-TQ-PGVQLQSN 84 (427)
T ss_dssp CCCCCCC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C---------CC-SSCEEEEE
T ss_pred EEEeeEEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccC-CcCCC-CC-ccceEeeE
Confidence 4555556777665 66665 788 9999999999999999999873 112 11111 11 12245689
Q ss_pred EEEEEcCCCCCCCCCccCCCeEEEEEEEEcCC
Q psy17514 79 TLTFDNSDKKNCPIGYENDNTIVICRQISIPS 110 (159)
Q Consensus 79 ~~v~q~~~~~~~~~~~~~~~~~tv~~~i~~~~ 110 (159)
++++|.+ .+++.+|+.+++.++.
T Consensus 85 ~~v~Q~~---------~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 85 TYDLQES---------NVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEC-----------CEEEEEEEEEECCCC
T ss_pred EEEeecC---------ccccccchhhhhhhhh
Confidence 9999985 4567899999998864
No 79
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.20 E-value=9.4e-13 Score=98.29 Aligned_cols=111 Identities=12% Similarity=0.104 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh---hhHHHHHHhhCCCceeE-EEEEEEEEcCCCCCCCCCccCCCeE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA---NTLQELIYKNGQAGVTK-ASVTLTFDNSDKKNCPIGYENDNTI 100 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~---~~~~~~~~~~~~~~~~~-~~i~~v~q~~~~~~~~~~~~~~~~~ 100 (159)
+++++|+||||||||||+++|. +..|+.|+|+. .| ++.. ....... ..+++++|.|+... +.+++++
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G-~~~t---~~~~~~~~~~~g~v~d~pg~~~----~~l~~~l 235 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERG-RHTT---TGVRLIPFGKGSFVGDTPGFSK----VEATMFV 235 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC----------CC---CCEEEEEETTTEEEESSCCCSS----CCGGGTS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCC-CCce---eeEEEEEcCCCcEEEECcCcCc----CcccccC
Confidence 6899999999999999999999 99999999988 55 2211 1111111 14799999875321 1233556
Q ss_pred EEEEEE--EcCCceE--EEEC---CEEeCHHHHHHHHHhcCccc----CCCeeEEe
Q psy17514 101 VICRQI--SIPSNTR--YMIN---GSSVNPKRVSDLFSSVNLNV----NNPHFLIM 145 (159)
Q Consensus 101 tv~~~i--~~~~~~~--~~~~---~~~~~~~~~~~~l~~~~l~~----~~~~~l~~ 145 (159)
|+ +++ .++.... ++.. ........+.++++.++|.. .++..+++
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~ 290 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKV 290 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTC
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 77 776 3331000 0011 12233467899999999974 34555655
No 80
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.19 E-value=1.2e-11 Score=94.48 Aligned_cols=49 Identities=24% Similarity=0.399 Sum_probs=42.4
Q ss_pred CeEEEEEEeCeeeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 1 m~~~~l~l~~~~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
|.+..|+++||.+|.+.. .+++.++++|+|||||||||||++|++++..
T Consensus 1 M~~~~l~~~~f~~~~~~~--i~~~~g~~~i~G~NGaGKTTll~ai~~al~g 49 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVD--IEFQSGITVVEGPNGAGKSSLFEAISFALFG 49 (365)
T ss_dssp CEEEEEEEEEETTEEEEE--EECCSEEEEEECCTTSSHHHHHHHHHHHHHS
T ss_pred CeeEEEEEeCccCccceE--EecCCCeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 888999999998887754 3566679999999999999999999998754
No 81
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.16 E-value=1.2e-11 Score=92.30 Aligned_cols=84 Identities=11% Similarity=0.200 Sum_probs=35.2
Q ss_pred eCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHH-hCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcCC
Q psy17514 9 DGF-KSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFV-LGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNSD 86 (159)
Q Consensus 9 ~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 86 (159)
+|+ +.|+.+.++.+++..+ +|+||||||||||++.|++. +.+.+| +.+.+ .++.. . .....+++++|..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g-~~~~~--t---~~~~~~~~~~q~~- 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFLTDLYPERV-ISGAA-EKIER--T---VQIEASTVEIEER- 72 (301)
T ss_dssp ----------------CEEE-EEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---
T ss_pred CCCcceECCEEEEcCCCEEE-EEECCCCCCHHHHHHHHhCCCccCCCC-cccCC-cccCC--c---ceEeeEEEEecCC-
Confidence 477 8898888888888777 99999999999999999987 777777 65554 22211 0 1134577888764
Q ss_pred CCCCCCCccCCCeEEEEEEEEcC
Q psy17514 87 KKNCPIGYENDNTIVICRQISIP 109 (159)
Q Consensus 87 ~~~~~~~~~~~~~~tv~~~i~~~ 109 (159)
.....+++.++..++
T Consensus 73 --------~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 73 --------GVKLRLTVVDTPGYG 87 (301)
T ss_dssp ---------CCEEEEEEEEC---
T ss_pred --------CcccCcchhhhhhhh
Confidence 345678999998775
No 82
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=1e-11 Score=96.38 Aligned_cols=87 Identities=9% Similarity=0.105 Sum_probs=53.6
Q ss_pred EEEEeCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHhCCccc--chhhhhHHHHHHhhCCCceeEEEEEEE
Q psy17514 5 SMVLDGF-KSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVK--QVRANTLQELIYKNGQAGVTKASVTLT 81 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g--~i~~~~~~~~~~~~~~~~~~~~~i~~v 81 (159)
.|.++|+ +.|+...++.+++..+ +|+|+||||||||+++|+|...+..| .+.... .. ......++++
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I-~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~-------~~--t~~~~~i~~v 80 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL-MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI-------KK--TVQVEQSKVL 80 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE-EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------------CCEEEEEECC
T ss_pred cEEEEecceeECCEEEecCCCEEE-EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCC-------cc--ceeeeeEEEE
Confidence 4889999 9999888889888777 99999999999999999998875443 221111 11 1124568888
Q ss_pred EEcCCCCCCCCCccCCCeEEEEEEEEcCC
Q psy17514 82 FDNSDKKNCPIGYENDNTIVICRQISIPS 110 (159)
Q Consensus 82 ~q~~~~~~~~~~~~~~~~~tv~~~i~~~~ 110 (159)
+|.+ .++..+++.+++.++.
T Consensus 81 ~q~~---------~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 81 IKEG---------GVQLLLTIVDTPGFGD 100 (418)
T ss_dssp ---------------CEEEEEEECC----
T ss_pred EecC---------Ccccceeeeechhhhh
Confidence 8864 3566789999988753
No 83
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.16 E-value=2.4e-11 Score=95.63 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
.++++|+|||||||||||++|+|++.|++|+|.+.|
T Consensus 29 ~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 29 ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp SSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred cceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 489999999999999999999999999999999987
No 84
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.13 E-value=4e-12 Score=99.29 Aligned_cols=80 Identities=15% Similarity=0.005 Sum_probs=57.0
Q ss_pred EEEeCe-eeec-CCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHH--HHHHhhCC---Ccee
Q psy17514 6 MVLDGF-KSYG-TRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ--ELIYKNGQ---AGVT 74 (159)
Q Consensus 6 l~l~~~-~~~~-~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~--~~~~~~~~---~~~~ 74 (159)
++++++ +.|+ +..+|+++- |++++|+||||||||||+++|+++..++.|.+.+.|.+ ++...... ....
T Consensus 132 l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l 211 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGR 211 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHH
T ss_pred eEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccccc
Confidence 456778 7886 455555442 68999999999999999999999999999988887731 33221100 0113
Q ss_pred EEEEEEEEEcC
Q psy17514 75 KASVTLTFDNS 85 (159)
Q Consensus 75 ~~~i~~v~q~~ 85 (159)
++.+++++|.+
T Consensus 212 ~r~i~~v~q~~ 222 (438)
T 2dpy_A 212 ARSVVIAAPAD 222 (438)
T ss_dssp HTEEEEEECTT
T ss_pred CceEEEEECCC
Confidence 56799999963
No 85
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.12 E-value=6.5e-13 Score=101.04 Aligned_cols=107 Identities=10% Similarity=-0.027 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC-Ccccchhhh-hHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG-IQVKQVRAN-TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVI 102 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~-~~~g~i~~~-~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~tv 102 (159)
+++++|+||||||||||+++|.|... +..|++... | .... ......+++++|++ .+++..++
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G-~g~~------tt~~~~i~~v~q~~---------~l~dtpgv 278 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSG-LGQH------TTTAARLYHFPHGG---------DVIDSPGV 278 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------------CCCEEEECTTSC---------EEEECHHH
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCC-CCcc------ceEEEEEEEECCCC---------EecCcccH
Confidence 68999999999999999999999999 999999875 4 2211 11345677777653 23333344
Q ss_pred EEEEEcCCceEEEECCEEeCHHHHHHHHHhcCccc---CCCeeEEeCh---hHhHhhc
Q psy17514 103 CRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNV---NNPHFLIMQG---RVTKVLN 154 (159)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~l~~q~---~ia~~l~ 154 (159)
.++ +.. .. ........+.++++.+++.. ..+..+++|. +||+++.
T Consensus 279 ~e~---~l~---~l-~~~e~~~~~~e~l~~~gl~~f~~~~~~~lSG~~~r~ala~gli 329 (358)
T 2rcn_A 279 REF---GLW---HL-EPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAI 329 (358)
T ss_dssp HTC---CCC---CC-CHHHHHHTSGGGGGGTTCSSSTTCCSSSCTTCHHHHHHHHTSS
T ss_pred HHh---hhc---CC-CHHHHHHHHHHHHHHcCCchhcCCCcccCCHHHHHHHHHhcCC
Confidence 332 110 00 11111234567778888865 3455666543 6665543
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.11 E-value=1.6e-11 Score=86.72 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=36.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS 85 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 85 (159)
+++++|+||||||||||+++|+|+++...+.+...+ ... ....+..++++||++
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~------~~~-~~~~~~~i~~~~q~~ 73 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATT------RAP-RPGEVDGVDYHFIDP 73 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEES------SCC-CTTCCBTTTBEECCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccc------cCC-cccccCCCeeEecCH
Confidence 799999999999999999999999852222211111 011 111245688999874
No 87
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.07 E-value=3.3e-11 Score=84.14 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=41.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS 85 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 85 (159)
+++++|+||||||||||+++|++++. ++| +.+++. +. .+....++.+++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~-~~----~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGF-YT----EEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEE-EC----CEEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCE-ec----chhHhhhceEEEEEEec
Confidence 57899999999999999999999999 888 887762 11 11111356789999974
No 88
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.06 E-value=5.8e-12 Score=93.97 Aligned_cols=49 Identities=16% Similarity=0.082 Sum_probs=40.1
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
|+++|+ +.|+ ..+|++++ +++++|+||||||||||+++|+|++ .|+|..
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS 156 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence 456778 7776 55666665 7899999999999999999999998 677743
No 89
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.04 E-value=5.2e-12 Score=103.41 Aligned_cols=29 Identities=28% Similarity=0.627 Sum_probs=24.1
Q ss_pred eeeecCC-----CCeEEEEcCCCCcHHHHHHHHH
Q psy17514 18 VEINDFD-----REFNAITGLNGTGKSNILDGIC 46 (159)
Q Consensus 18 ~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~ 46 (159)
.+|+++| +++++|+||||||||||+++|.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3466665 7999999999999999998764
No 90
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.03 E-value=1.1e-10 Score=83.16 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=38.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS 85 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 85 (159)
+++++|+||||||||||+++|++++ | |.+.+ + .++.. .......+..++++||++
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g-~~~~~-~~~~~~~~~~i~~~~~~~ 77 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-S-VSCTT-RKKREKEKEGVDYYFIDK 77 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-C-CCEEC-SCCCSSCCBTTTBEECCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-e-ecccC-CCCCcccccCCeEEECCH
Confidence 7899999999999999999999998 5 78877 4 22111 011111235678888874
No 91
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.03 E-value=1.7e-12 Score=105.17 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=41.4
Q ss_pred EEEEeCe-eeecCC--eeee------------cCCCCeEEEEcCCCCcHHHHHHHHHHHhCC-cccchhhhhHHHHH-Hh
Q psy17514 5 SMVLDGF-KSYGTR--VEIN------------DFDREFNAITGLNGTGKSNILDGICFVLGI-QVKQVRANTLQELI-YK 67 (159)
Q Consensus 5 ~l~l~~~-~~~~~~--~~l~------------~~~~~~~~liG~NGaGKSTLl~~i~~~~~~-~~g~i~~~~~~~~~-~~ 67 (159)
.++++|+ ..|+.. ++++ +++-..++|+|||||||||||++|+|+..| ++|.+.+.+ .++. ..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g-~~i~~~~ 88 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP-LVLKLKK 88 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSC-EEEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcC-EEEEEec
Confidence 4678888 788642 2222 233456999999999999999999999888 799998887 2321 11
Q ss_pred hCCCceeEEEEEEEEEcC
Q psy17514 68 NGQAGVTKASVTLTFDNS 85 (159)
Q Consensus 68 ~~~~~~~~~~i~~v~q~~ 85 (159)
.......+..++++||++
T Consensus 89 ~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 89 LVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp CSSSSCCEEEESCC---C
T ss_pred CCccccceeEEeeecccc
Confidence 111223578899999975
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.00 E-value=4.4e-11 Score=90.84 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=44.8
Q ss_pred EEEeCe-eeec-CCeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 6 MVLDGF-KSYG-TRVEINDFD----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 6 l~l~~~-~~~~-~~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
++.+++ +.|+ +..+++++- |++++|+||||||||||+++|+++..|+.|.+.+.|
T Consensus 46 i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 46 LLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp TTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred eeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 566788 8887 555555442 789999999999999999999999999988776654
No 93
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.96 E-value=3.5e-10 Score=81.77 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=33.5
Q ss_pred cCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEc
Q psy17514 15 GTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDN 84 (159)
Q Consensus 15 ~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 84 (159)
++..+|.+++ +++++|+||||||||||+++|++++ |.+.++. .++.+++++|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~-------------~~~~i~~v~~d 67 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQ-------------RQRKVVILSQD 67 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCG-------------GGCSEEEEEGG
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccc-------------cCCceEEEeCC
Confidence 4556777777 5689999999999999999999987 4444430 23458889887
No 94
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.95 E-value=1.5e-11 Score=93.08 Aligned_cols=55 Identities=22% Similarity=0.152 Sum_probs=45.3
Q ss_pred EEEeCe-eeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 6 MVLDGF-KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
|+++++ +.|+...++.+++ +++++|+|+||||||||+++|++++.|+.|++.+.+
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 566777 7776555666555 679999999999999999999999999888887765
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.94 E-value=1.8e-10 Score=84.23 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=36.4
Q ss_pred eeecCC---CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhh
Q psy17514 19 EINDFD---REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANT 60 (159)
Q Consensus 19 ~l~~~~---~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~ 60 (159)
+|.+++ +++++|+||||||||||+++|++++.|+ +|+|.+.+
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 445554 7899999999999999999999999987 89988766
No 96
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.94 E-value=6.6e-10 Score=76.15 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCcHHHHHH------------HHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILD------------GICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~------------~i~~~~~~~~g~i~~~~ 60 (159)
+++++|+||||||||||++ .+.++..++.|...+.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~ 56 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTG 56 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHH
T ss_pred CEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHH
Confidence 7899999999999999999 88888888877776654
No 97
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.90 E-value=7.8e-10 Score=76.67 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++|+||||||||||+++|+++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999999987
No 98
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.90 E-value=4e-10 Score=84.05 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh---CCCce-eEEEEEEEEEcCCCCCCCCCccCCCeE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN---GQAGV-TKASVTLTFDNSDKKNCPIGYENDNTI 100 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~---~~~~~-~~~~i~~v~q~~~~~~~~~~~~~~~~~ 100 (159)
+++++|+|||||||||+++.|++++.++.|++.+.+. +..+.. +...+ .+..|++++|++. ..++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~-d~~r~~a~~ql~~~~~~~~i~~v~q~~~--------~~~~~~ 170 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG-DTFRAAASDQLEIWAERTGCEIVVAEGD--------KAKAAT 170 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC-CCSCHHHHHHHHHHHHHHTCEEECCC----------CCCHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee-cccchhHHHHHHHHHHhcCceEEEecCC--------ccCHHH
Confidence 6899999999999999999999999999999887662 211000 00000 1345889998742 044555
Q ss_pred EEEEEEEc
Q psy17514 101 VICRQISI 108 (159)
Q Consensus 101 tv~~~i~~ 108 (159)
++.+++.+
T Consensus 171 ~v~e~l~~ 178 (302)
T 3b9q_A 171 VLSKAVKR 178 (302)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.90 E-value=5.7e-10 Score=83.26 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 24 DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
.+++++|+||||||||||++.|++++.|+.|++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3789999999999999999999999999999988766
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.89 E-value=3e-10 Score=90.58 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=44.0
Q ss_pred EEEeCe-eeecCCeeeecCC------CCeEEEEcCCCCcHHHHHHH--HHHHhCCcccchhhhh
Q psy17514 6 MVLDGF-KSYGTRVEINDFD------REFNAITGLNGTGKSNILDG--ICFVLGIQVKQVRANT 60 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~------~~~~~liG~NGaGKSTLl~~--i~~~~~~~~g~i~~~~ 60 (159)
++.+++ +...+..+|++++ +++++|+||||||||||+++ ++|+++|..|.+++.+
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 555667 4344666777776 47899999999999999999 7899998889998876
No 101
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.87 E-value=5.2e-10 Score=84.42 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+++++|+||||||||||+++|+++++|+.|.+.+.+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 789999999999999999999999999999998877
No 102
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.85 E-value=2.3e-10 Score=80.31 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=29.9
Q ss_pred EEEEeCe-eeecCCeeeecCC---CCeEEEEcCCCCcHHHHHHHHHHHh-----CCcccchh
Q psy17514 5 SMVLDGF-KSYGTRVEINDFD---REFNAITGLNGTGKSNILDGICFVL-----GIQVKQVR 57 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~---~~~~~liG~NGaGKSTLl~~i~~~~-----~~~~g~i~ 57 (159)
.|+++|+ +.|+. .++.++. +..++|+|+||||||||+++|++.. .|+.|..+
T Consensus 3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~ 63 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63 (210)
T ss_dssp --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence 4889999 88963 4555554 5679999999999999999998876 45555443
No 103
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.85 E-value=1e-09 Score=77.34 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC---cccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI---QVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~---~~g~i~~~~ 60 (159)
+++++|+||||||||||+++|++++.+ ..|.+..++
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 789999999999999999999999975 356555443
No 104
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.85 E-value=1.5e-09 Score=81.07 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC--Ccccchhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG--IQVKQVRA 58 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~--~~~g~i~~ 58 (159)
+++++|+||||||||||+++|++++. |++|++.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 57999999999999999999999998 88888776
No 105
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.83 E-value=2.1e-09 Score=75.38 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++|+||||||||||+++|.++++
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 57899999999999999999999875
No 106
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.83 E-value=7.1e-10 Score=82.77 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh---hhHHHHHHhhCCCceeEEEEEEEEEcCCCCCCCCCccCCCeEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA---NTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIV 101 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~---~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~t 101 (159)
+++++|+||||+|||||+++|.|...+..|++.. .| +.... .....+..+++++|.|+-..+. + .+++
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G-~~tt~---~~~~~~~~~g~v~dtpg~~~~~----l-~~lt 243 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRG-KHTTR---HVELIHTSGGLVADTPGFSSLE----F-TDIE 243 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--------------------CC---CCCEEEETTEEEESSCSCSSCC----C-TTCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCC-ccccc---HHHHhhcCCEEEecCCCccccc----c-ccCC
Confidence 7899999999999999999999999999999987 44 22211 1111111268999987532111 1 1356
Q ss_pred EEEEEE--cCCc----eEEEECC---EEeCHHHHHHHHHhcCccc
Q psy17514 102 ICRQIS--IPSN----TRYMING---SSVNPKRVSDLFSSVNLNV 137 (159)
Q Consensus 102 v~~~i~--~~~~----~~~~~~~---~~~~~~~~~~~l~~~~l~~ 137 (159)
+ +++. ++.. ..++..+ ..+....+.++++.++|..
T Consensus 244 ~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 244 E-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp H-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred H-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 6 6662 2200 0011111 1223357889999999964
No 107
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.82 E-value=1.1e-09 Score=83.47 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhh---CCCce-eEEEEEEEEEcCCCCCCCCCccCCCeE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKN---GQAGV-TKASVTLTFDNSDKKNCPIGYENDNTI 100 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~---~~~~~-~~~~i~~v~q~~~~~~~~~~~~~~~~~ 100 (159)
+++++|+|||||||||+++.|++++.++.|++.+.+. +..+.. +...+ .+..|++++|++. ..++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~-D~~r~~a~eql~~~~~r~~i~~v~q~~~--------~~~p~~ 227 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG-DTFRAAASDQLEIWAERTGCEIVVAEGD--------KAKAAT 227 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC-CCSCHHHHHHHHHHHHHHTCEEECCSSS--------SCCHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc-cccccchhHHHHHHHHhcCeEEEEeccc--------ccChhh
Confidence 6899999999999999999999999999999887652 211000 00000 1345889998742 034445
Q ss_pred EEEEEEEc
Q psy17514 101 VICRQISI 108 (159)
Q Consensus 101 tv~~~i~~ 108 (159)
++.+++.+
T Consensus 228 tv~e~l~~ 235 (359)
T 2og2_A 228 VLSKAVKR 235 (359)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 56666543
No 108
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.82 E-value=1.2e-09 Score=83.33 Aligned_cols=73 Identities=12% Similarity=0.240 Sum_probs=47.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEE-EcCCCCCCCCCccCCCeEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTF-DNSDKKNCPIGYENDNTIVIC 103 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~-q~~~~~~~~~~~~~~~~~tv~ 103 (159)
+++++|+||||||||||+++|+++++|+.|.|.+.+..++ . ....+..+++++ |++.. ..+...|+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~----~-~~~~~~~v~~v~~q~~~~-------~~~~~~t~~ 242 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL----F-LPDHPNHVHLFYPSEAKE-------EENAPVTAA 242 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC----C-CTTCSSEEEEECC-----------------CCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc----C-ccccCCEEEEeecCcccc-------ccccccCHH
Confidence 7899999999999999999999999999999988762111 1 111345788998 66421 012344666
Q ss_pred EEEEcC
Q psy17514 104 RQISIP 109 (159)
Q Consensus 104 ~~i~~~ 109 (159)
+++...
T Consensus 243 ~~i~~~ 248 (361)
T 2gza_A 243 TLLRSC 248 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.82 E-value=1.5e-09 Score=75.17 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQEL 64 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~ 64 (159)
+++++|+||||||||||+++|++. +..|.+.+++ +++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~-d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHS-DDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECT-THH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcc-cch
Confidence 678999999999999999999987 5677777776 344
No 110
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.80 E-value=1.3e-09 Score=82.16 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+++++|+|||||||||+++.|++++.++.|++.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 789999999999999999999999999999887765
No 111
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.80 E-value=2.9e-09 Score=74.46 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++++|+||||||||||+++|+++++
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999999964
No 112
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.79 E-value=2e-09 Score=77.31 Aligned_cols=54 Identities=17% Similarity=0.017 Sum_probs=34.6
Q ss_pred EEEEeCe-eeecCCe-eee-cCC-CCeEEEEcCCCCcHHHHHHHHH--HHhCCcccchhh
Q psy17514 5 SMVLDGF-KSYGTRV-EIN-DFD-REFNAITGLNGTGKSNILDGIC--FVLGIQVKQVRA 58 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~-~l~-~~~-~~~~~liG~NGaGKSTLl~~i~--~~~~~~~g~i~~ 58 (159)
.++++++ ..+.... ++. .+. +++++|+||||||||||+++|+ ++..+..+.+++
T Consensus 6 ~~~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~ 65 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp --CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred ccccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4566666 4554432 221 222 7899999999999999999999 664444444444
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.78 E-value=2.9e-09 Score=81.22 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcc----cchhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQV----KQVRAN 59 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~----g~i~~~ 59 (159)
++.++|+||||||||||+++|+|++.|+. |++++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 56899999999999999999999999998 877653
No 114
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.77 E-value=3.1e-09 Score=75.42 Aligned_cols=27 Identities=15% Similarity=0.423 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+++++|+||||||||||+++|++...+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 689999999999999999999997655
No 115
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.77 E-value=1.3e-09 Score=83.55 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=39.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchhhhhHHHHHHhhCCCceeEEEEEEEEE
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVRANTLQELIYKNGQAGVTKASVTLTFD 83 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q 83 (159)
+++++|+||||||||||+++|.+++.+. .|.|...+ +++ ....+..+++++|
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e-~~~------e~~~~~~~~~v~Q 188 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE-DPI------EYVFKHKKSIVNQ 188 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE-SSC------CSCCCCSSSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec-ccH------hhhhccCceEEEe
Confidence 6799999999999999999999999887 78886554 111 1112345677887
No 116
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.77 E-value=1.9e-09 Score=77.88 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH---HHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGIC---FVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~---~~~~~~~g~i~~~~ 60 (159)
+++++|+||||||||||+++|+ |+..++.|++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~ 65 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN 65 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence 6899999999999999999999 88888888887654
No 117
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.75 E-value=4.6e-09 Score=72.52 Aligned_cols=51 Identities=25% Similarity=0.192 Sum_probs=32.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHhhCCCceeEEEEEEEEEcC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNGQAGVTKASVTLTFDNS 85 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 85 (159)
.++|+||||||||||+++|+|++. +.+.|. +. . .......+..+++++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~-~~-~-~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGF-WT-E-EVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEE-EE-E-EEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCE-Eh-h-hhccccccceeEEEeecC
Confidence 478999999999999999999985 334331 00 0 000001345688998874
No 118
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.75 E-value=2.4e-09 Score=84.33 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=42.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhhHHHHHHh---hC-CCceeEEEEEEEEEcC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYK---NG-QAGVTKASVTLTFDNS 85 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~~~~~~~~---~~-~~~~~~~~i~~v~q~~ 85 (159)
+++++|+|+||||||||++.|++++.++.|+|.+.+. +..+. .+ .....+..|++++|..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~-D~~r~aa~eQL~~~~~r~~I~vV~Q~~ 356 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG-DTFRAAAVEQLQVWGQRNNIPVIAQHT 356 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC-CTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC-cccchhhHHHHHHHHHhcCceEEeccc
Confidence 6799999999999999999999999998898887541 11100 00 0000244688999874
No 119
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.74 E-value=4.1e-09 Score=81.85 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=33.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+++++|+|||||||||||++|.+++.+..|.|...+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 689999999999999999999999999989888766
No 120
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.74 E-value=3.5e-09 Score=75.70 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH-HHh
Q psy17514 25 REFNAITGLNGTGKSNILDGIC-FVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~-~~~ 49 (159)
+++++|+||||||||||+++|+ +++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999999 998
No 121
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.71 E-value=2.7e-09 Score=73.27 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCCc---ccchhhhh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGIQ---VKQVRANT 60 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~~---~g~i~~~~ 60 (159)
++++|+|+||||||||++.|.+++.++ .|.|.+++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 578999999999999999999999887 89998877
No 122
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.71 E-value=2.8e-09 Score=74.65 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch--hhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV--RANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i--~~~~ 60 (159)
+++++|+|||||||||+.++|++.+. ..|.+ ++++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 68999999999999999999999886 45655 5554
No 123
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.70 E-value=7.3e-09 Score=72.84 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+++++|+||||||||||+++|++++++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999998763
No 124
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.70 E-value=1.1e-08 Score=70.57 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=25.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 23 FDREFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 23 ~~~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.+++++|+||||||||||+++|.+..++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 34789999999999999999999998763
No 125
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.67 E-value=8.2e-09 Score=71.41 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+++++|+||||||||||+++|++ +..|.+++++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~ 34 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEG 34 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcc
Confidence 35789999999999999999987 3445555554
No 126
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.62 E-value=1.1e-08 Score=81.37 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
++.++|+|||||||||||++|+++++|+.|.+.+.+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 678999999999999999999999999988887765
No 127
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.61 E-value=2.2e-08 Score=70.03 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+++++|+|||||||||++++|++.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999999999887
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.60 E-value=1.3e-08 Score=76.32 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh--------CCcccchhhhh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL--------GIQVKQVRANT 60 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~--------~~~~g~i~~~~ 60 (159)
++++|+|+|||||||||+.|.+.. .++.|++.+++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg 47 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD 47 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccH
Confidence 478999999999999999999986 67889988876
No 129
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.58 E-value=1.6e-08 Score=77.05 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc-ccchh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ-VKQVR 57 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~-~g~i~ 57 (159)
+++++|+|||||||||||++|.+++.+. .|.+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~ 156 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL 156 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE
Confidence 5799999999999999999999999887 45543
No 130
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.57 E-value=1.4e-08 Score=73.64 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH---HHhCCcccchh
Q psy17514 25 REFNAITGLNGTGKSNILDGIC---FVLGIQVKQVR 57 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~---~~~~~~~g~i~ 57 (159)
+.+++|+|||||||||++++|+ |+..++.|.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 5799999999999999999999 88888888887
No 131
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.56 E-value=3.7e-08 Score=68.80 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVK 54 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g 54 (159)
+++++|+|||||||||++++|++.+.|+.|
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 679999999999999999999998866544
No 132
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.55 E-value=2.7e-08 Score=82.44 Aligned_cols=40 Identities=33% Similarity=0.366 Sum_probs=31.8
Q ss_pred CeeeecCC--CCeEEEEcCCCCcHHHHHHHHHHHhC-Ccccch
Q psy17514 17 RVEINDFD--REFNAITGLNGTGKSNILDGICFVLG-IQVKQV 56 (159)
Q Consensus 17 ~~~l~~~~--~~~~~liG~NGaGKSTLl~~i~~~~~-~~~g~i 56 (159)
..++.+++ +++++|+|||||||||||++|+|+.. +..|.+
T Consensus 566 ~~vl~disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 566 EFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp CCCCEEEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEeeeccCCCcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 44555555 68999999999999999999999864 555654
No 133
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.53 E-value=2.6e-08 Score=83.84 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCccc----CCCeeEEe---Ch-hHhHhhcCCC
Q psy17514 124 KRVSDLFSSVNLNV----NNPHFLIM---QG-RVTKVLNMKP 157 (159)
Q Consensus 124 ~~~~~~l~~~~l~~----~~~~~l~~---q~-~ia~~l~~~p 157 (159)
.+..++|+.++|.. ..+.+||+ |+ +||++|+.+|
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCC
Confidence 45667888999964 35668888 33 9999999877
No 134
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.53 E-value=4.8e-08 Score=83.21 Aligned_cols=45 Identities=29% Similarity=0.337 Sum_probs=32.9
Q ss_pred EEEEeC-----e-eee-cCCeeeecCC------------CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 5 SMVLDG-----F-KSY-GTRVEINDFD------------REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 5 ~l~l~~-----~-~~~-~~~~~l~~~~------------~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.|++++ + +.| ++..++.+++ +++++|+|||||||||||++| |++.
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 378888 7 777 5555666554 379999999999999999999 8765
No 135
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.51 E-value=6.5e-09 Score=78.39 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=48.3
Q ss_pred EEEeCe-eeecCCeeeecCC------------CCeEEEEcCCCCcHHHHHHHHHHHh----CCcccchhhhhHHHHHHhh
Q psy17514 6 MVLDGF-KSYGTRVEINDFD------------REFNAITGLNGTGKSNILDGICFVL----GIQVKQVRANTLQELIYKN 68 (159)
Q Consensus 6 l~l~~~-~~~~~~~~l~~~~------------~~~~~liG~NGaGKSTLl~~i~~~~----~~~~g~i~~~~~~~~~~~~ 68 (159)
++.++| ..|++..++.+++ .+.++|+||||+|||||+++|++.+ .+.+|.+...+ .++....
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~-~~l~~~~ 97 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ-GDMAAIL 97 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH-HHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH-HHHHHHH
Confidence 445566 5666554444433 1678999999999999999999998 56677776554 3332111
Q ss_pred CCCceeEEEEEEEEEc
Q psy17514 69 GQAGVTKASVTLTFDN 84 (159)
Q Consensus 69 ~~~~~~~~~i~~v~q~ 84 (159)
.. ..+..|.++.|.
T Consensus 98 ~~--~~~~~v~~iDE~ 111 (334)
T 1in4_A 98 TS--LERGDVLFIDEI 111 (334)
T ss_dssp HH--CCTTCEEEEETG
T ss_pred HH--ccCCCEEEEcch
Confidence 00 012357777765
No 136
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.50 E-value=4e-08 Score=72.67 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCccc-ch
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVK-QV 56 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i 56 (159)
+++++|+||||||||||++.|++...+..| .+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v 67 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 689999999999999999999999987766 44
No 137
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.50 E-value=9.6e-08 Score=66.89 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=26.0
Q ss_pred eecCCCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 20 INDFDREFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 20 l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+....+.+++|+||||||||||++.|....+
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445689999999999999999999998865
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.49 E-value=7.3e-08 Score=67.85 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.+++|+||||||||||++.|+..+++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 789999999999999999999998865
No 139
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.47 E-value=4.9e-08 Score=69.14 Aligned_cols=34 Identities=24% Similarity=-0.007 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
+++++|+||||||||||++.|++...+..|.+.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~ 56 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6899999999999999999999887666565544
No 140
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.46 E-value=5.3e-08 Score=68.17 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV 56 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i 56 (159)
+.+++|+|+|||||||++++|++.+.+..|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 57899999999999999999999886655544
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.46 E-value=5.7e-08 Score=66.66 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVK 54 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g 54 (159)
++.++|+||||+|||||+++|++.+.+..|
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 688999999999999999999999876555
No 142
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.45 E-value=1.3e-07 Score=64.23 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.+++|+|+|||||||++++|++.+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467899999999999999999998764
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.43 E-value=7.9e-08 Score=64.38 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=27.7
Q ss_pred eecCCCCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 20 INDFDREFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 20 l~~~~~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+..+.++.++|+||||+|||||+++|++...+
T Consensus 31 l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 31 LRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44446789999999999999999999998865
No 144
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.39 E-value=7.5e-08 Score=69.89 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=29.6
Q ss_pred EEEEeCe--eee-cCCeeeecCC--------CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 5 SMVLDGF--KSY-GTRVEINDFD--------REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 5 ~l~l~~~--~~~-~~~~~l~~~~--------~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
.|+++|+ ++| ++..+|++++ +++++|+|++||||||+.++|+..+..
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4778886 567 5666777765 578999999999999999999986654
No 145
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.39 E-value=1.9e-07 Score=70.09 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+||||||||||+++|.+++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 899999999999999999999987
No 146
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.39 E-value=1.2e-07 Score=75.89 Aligned_cols=36 Identities=25% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCccc-chh-hhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVK-QVR-ANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g-~i~-~~~ 60 (159)
+++++|+|+||||||||+++|++.+.+..| .+. +++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 678999999999999999999999988775 564 555
No 147
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.37 E-value=1.4e-07 Score=65.37 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
.++|+|+||||||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998754
No 148
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.37 E-value=1.9e-07 Score=63.66 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++++|+|+|||||||+.++|++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 67899999999999999999998763
No 149
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.37 E-value=1.8e-07 Score=77.96 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=27.0
Q ss_pred CeeeecCC----CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 17 RVEINDFD----REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 17 ~~~l~~~~----~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
..++.+++ +++++|+|||||||||||++|+++.
T Consensus 595 ~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34445544 6799999999999999999999975
No 150
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.36 E-value=7.7e-08 Score=68.76 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
+++++|+|+|||||||++++|++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999999987
No 151
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.34 E-value=1.8e-07 Score=78.86 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=26.5
Q ss_pred CeeeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 17 RVEINDFD-----REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 17 ~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
..++.+++ +++++|+|||||||||||++|+++.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 34555554 6899999999999999999997653
No 152
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.32 E-value=2.7e-07 Score=65.82 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HhCC-----cccchhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICF--VLGI-----QVKQVRAN 59 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~--~~~~-----~~g~i~~~ 59 (159)
+++++|+||||||||||+..|++ ++++ ..+.+++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 68999999999999999999999 4544 34455554
No 153
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.30 E-value=2.6e-07 Score=65.42 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=28.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh---CCcccchhh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL---GIQVKQVRA 58 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~---~~~~g~i~~ 58 (159)
.+++|+||+||||||+.+.|++.+ .++.|.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 478999999999999999999887 456777665
No 154
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.30 E-value=3.2e-07 Score=67.35 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 28 NAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
++|+||||||||||+++|++.+.+. .+.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~--~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN--FISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE--EEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC--EEEEEc
Confidence 8999999999999999999998763 444433
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.29 E-value=9.4e-08 Score=70.09 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 28 NAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
++|+||||+|||||+++|++.+. .+.+.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 106 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence 78999999999999999999876 55666555
No 156
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.25 E-value=4.5e-07 Score=68.82 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh--CCcc----cc-hhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL--GIQV----KQ-VRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~--~~~~----g~-i~~~~ 60 (159)
++++.|+||||||||||+..+++.. +|+. |. +++++
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 6799999999999999999999997 5555 45 55544
No 157
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.23 E-value=4.5e-07 Score=69.78 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH------------HhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICF------------VLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~------------~~~~~~g~i~~~~ 60 (159)
+..++|+|+||||||||+++|++ ...|..|.+.+.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 57899999999999999999999 4456777776654
No 158
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.22 E-value=5.6e-07 Score=76.04 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~ 47 (159)
+++++|+|||||||||+|++|++
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999943
No 159
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.18 E-value=5.4e-07 Score=67.20 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
+++++|+|+|||||||++..|++.+.+..+.+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~l 137 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 137 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEE
Confidence 5799999999999999999999999877666544
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.18 E-value=8.4e-07 Score=65.87 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVK 54 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g 54 (159)
+++++|+|+||+||||++..|++.+.++.|
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999887555
No 161
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.16 E-value=3.6e-07 Score=76.37 Aligned_cols=42 Identities=24% Similarity=0.523 Sum_probs=32.2
Q ss_pred EEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHH-HHHHhC
Q psy17514 5 SMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDG-ICFVLG 50 (159)
Q Consensus 5 ~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~-i~~~~~ 50 (159)
.|+++|+.. .+|++++ |++++|+|+||||||||++. |++++.
T Consensus 502 ~L~v~~l~~----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~ 549 (842)
T 2vf7_A 502 WLELNGVTR----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALA 549 (842)
T ss_dssp EEEEEEEEE----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred eEEEEeeee----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 367777722 1356665 79999999999999999997 787763
No 162
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=1.6e-06 Score=60.42 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=23.7
Q ss_pred eeecCC-----CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 19 EINDFD-----REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 19 ~l~~~~-----~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
++++++ +.+++|+|++||||||+.+.|+..+..
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 445555 468999999999999999999977643
No 163
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=1.1e-06 Score=66.28 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH-HhCCcccchhhhh
Q psy17514 28 NAITGLNGTGKSNILDGICF-VLGIQVKQVRANT 60 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~-~~~~~~g~i~~~~ 60 (159)
+.|+||||+||||++++|++ +.++..|.+.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 88999999999999999999 7788888887766
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.13 E-value=1.7e-06 Score=62.35 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=32.2
Q ss_pred eecCCeeeecCCCC---eEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 13 SYGTRVEINDFDRE---FNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 13 ~~~~~~~l~~~~~~---~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
.|....++.+++.. -++|+||||+|||||+++|++.+. .+.+.+.+
T Consensus 34 ~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 34443444554422 278999999999999999999876 45565554
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.12 E-value=1.5e-06 Score=60.34 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 28 NAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
++|+|+||||||||++.+++...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999998753
No 166
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.11 E-value=1.1e-06 Score=66.66 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV 56 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i 56 (159)
+.+++|+|++|||||||+++|.+.+.+..+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 56889999999999999999999876654443
No 167
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.07 E-value=2.4e-06 Score=62.58 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++++|+||||||||||+..+++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999998654
No 168
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.04 E-value=2.1e-06 Score=59.91 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
+++|+|+|||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999987
No 169
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.02 E-value=3.1e-06 Score=58.93 Aligned_cols=21 Identities=29% Similarity=0.214 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 579999999999999999998
No 170
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.01 E-value=3.6e-06 Score=59.00 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~ 47 (159)
+++++|+||||||||||+..|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999998
No 171
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.01 E-value=1.9e-06 Score=72.91 Aligned_cols=36 Identities=25% Similarity=0.591 Sum_probs=27.5
Q ss_pred EEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHH
Q psy17514 6 MVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGI 45 (159)
Q Consensus 6 l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i 45 (159)
|+++++.. .+|++++ |++++|+|+||||||||+++|
T Consensus 648 L~v~~l~~----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 648 LTVVGARE----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp EEEEEECS----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred EEEecCcc----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 66666621 1345555 799999999999999999985
No 172
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.00 E-value=2e-06 Score=63.79 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 24 DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
.+++++|+|+||+||||++..|++.+.+..|.+.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l 131 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 36799999999999999999999999877666544
No 173
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.99 E-value=3.3e-06 Score=67.64 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~~ 60 (159)
+..++|+||||+|||||+++|++.+.+..+.+...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 678999999999999999999999988777776655
No 174
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.99 E-value=4.6e-06 Score=63.89 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++++|+||||||||||+++|++...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 67999999999999999999998764
No 175
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.98 E-value=2.7e-06 Score=65.71 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHH--HHHhCCc
Q psy17514 25 REFNAITGLNGTGKSNILDGI--CFVLGIQ 52 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i--~~~~~~~ 52 (159)
++++.|+||||||||||+..| .++++++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~ 207 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLD 207 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcc
Confidence 689999999999999999955 4555543
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.97 E-value=4.5e-06 Score=56.97 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++|+|++||||||+.++|+..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67889999999999999999998763
No 177
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.97 E-value=3.8e-06 Score=66.96 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
+++++|+||||||||||++.+++...+.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 6899999999999999999999987664
No 178
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.97 E-value=2.9e-06 Score=59.29 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+.+++|+|++||||||+.+.|++.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999875
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.96 E-value=3e-06 Score=63.56 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN 59 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~~ 59 (159)
+++++|+|+||+||||++..|++.+.+..+.+.+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999999999998777766553
No 180
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.95 E-value=5.7e-06 Score=57.77 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 24 DREFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 24 ~~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.+.+++|+||+||||||+.+.|...++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 367899999999999999999987764
No 181
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.95 E-value=2.1e-06 Score=72.49 Aligned_cols=38 Identities=24% Similarity=0.511 Sum_probs=28.4
Q ss_pred EEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHHHHHHH
Q psy17514 5 SMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGIC 46 (159)
Q Consensus 5 ~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTLl~~i~ 46 (159)
.|+++++.. ..|++++ |++++|+|+||||||||+++|.
T Consensus 629 ~L~v~~l~~----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 629 WLEVVGARE----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEEEECS----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEEecCcc----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 366666621 2355555 7999999999999999999853
No 182
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.94 E-value=3.4e-06 Score=59.24 Aligned_cols=30 Identities=23% Similarity=0.168 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVK 54 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g 54 (159)
+.+++|+|++||||||+.+.|+..+.+..|
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 678999999999999999999988774444
No 183
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.93 E-value=6.1e-06 Score=57.41 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..+++|+|++||||||+.+.|+..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988764
No 184
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.92 E-value=4.1e-06 Score=61.96 Aligned_cols=27 Identities=30% Similarity=0.143 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.+++|+|++|||||||.+.|..++.+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 568999999999999999999998865
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.90 E-value=1.7e-06 Score=67.03 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++.++|+|+|||||||||++|++..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 4678999999999999999998874
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.87 E-value=5.8e-06 Score=62.43 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQV 53 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~ 53 (159)
+.+++|+|++|+|||||++.|++.+.+..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~ 84 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREG 84 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999998875443
No 187
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.86 E-value=6.1e-06 Score=56.67 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQ 55 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~ 55 (159)
+.+++|+|++||||||+.+.|+..+....+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~ 43 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYR 43 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 6788999999999999999999887654333
No 188
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.84 E-value=2.9e-06 Score=68.71 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQV 53 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~ 53 (159)
++.++|+||||+|||||+++|++++.+..
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 57899999999999999999999998764
No 189
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.83 E-value=1.3e-05 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.+++|+|++|||||||++.|...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999988754
No 190
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.82 E-value=7.9e-06 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998643
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=3.3e-06 Score=63.52 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=24.0
Q ss_pred CCe--EEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 25 REF--NAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 25 ~~~--~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
+++ +.|+||+|+||||+++++++.+.+.
T Consensus 44 g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 445 8999999999999999999987544
No 192
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.80 E-value=1.5e-05 Score=53.65 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+++|+|++||||||+.+.|+..+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6789999999999999999877643
No 193
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.78 E-value=1.7e-06 Score=65.94 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=29.5
Q ss_pred EEEEeCe-eeecCCeeeecCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 5 SMVLDGF-KSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 5 ~l~l~~~-~~~~~~~~l~~~~~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.+.+.++ +.|..+.+..+++.. ++|+|++|+|||||++.|.+..
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~-I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFT-LMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEEC-EEECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCeeecCCCCEE-EEEEcCCCCCHHHHHHHHhCCC
Confidence 3566777 666665555544333 4899999999999999987653
No 194
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.76 E-value=1.4e-05 Score=55.36 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.++|+||+|||||||++.|.--
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999998644
No 195
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.74 E-value=1.4e-05 Score=54.46 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 196
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.73 E-value=1.5e-05 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
..++|+|++|+|||||++.+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457999999999999999998753
No 197
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.71 E-value=1.5e-05 Score=59.11 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
..+++|+|++|+|||||+++|.+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4578999999999999999998753
No 198
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.70 E-value=1.8e-05 Score=56.37 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHH-HHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGI-CFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i-~~~~ 49 (159)
+++++|+||||+|||||+..+ ..+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999996555 4443
No 199
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.70 E-value=2.6e-05 Score=55.62 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.+++|.|++||||||+++.|+..+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 568899999999999999999988764
No 200
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.70 E-value=1.4e-05 Score=62.29 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-++|+|+||+|||||++.|.+...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 578999999999999999998753
No 201
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.69 E-value=1.2e-05 Score=61.22 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++|+|++|||||||+++|++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999998754
No 202
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.66 E-value=3.6e-05 Score=52.18 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.++.|+|++||||||+.+.|+-.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999987664
No 203
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.66 E-value=2.5e-05 Score=59.25 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=25.6
Q ss_pred eeeecCC--CCeEEEEcCCCCcHHHHHHHHHHH--hCCccc
Q psy17514 18 VEINDFD--REFNAITGLNGTGKSNILDGICFV--LGIQVK 54 (159)
Q Consensus 18 ~~l~~~~--~~~~~liG~NGaGKSTLl~~i~~~--~~~~~g 54 (159)
.+|.+++ .-.++|+|++||||||||++|.|. ++...|
T Consensus 25 ~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~ 65 (360)
T 3t34_A 25 SALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (360)
T ss_dssp CCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS
T ss_pred cccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC
Confidence 3455554 347899999999999999999994 344444
No 204
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.66 E-value=1.5e-05 Score=54.40 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|++|+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999874
No 205
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.65 E-value=3.9e-05 Score=54.74 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++|+|++||||||+.+.|+..++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998654
No 206
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.65 E-value=3.4e-05 Score=55.82 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+||+|||||||-+.|+.-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 578999999999999999987654
No 207
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.64 E-value=3.6e-05 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999987654
No 208
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.62 E-value=4e-05 Score=52.94 Aligned_cols=23 Identities=43% Similarity=0.361 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999999854
No 209
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.62 E-value=3.1e-05 Score=51.95 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGI 45 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i 45 (159)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999999
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.61 E-value=3.8e-05 Score=55.30 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-+.|+||+|+|||||+++|++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998875
No 211
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.60 E-value=1.9e-05 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987764
No 212
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.60 E-value=4.6e-05 Score=51.93 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.+++|+|++|||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4689999999999999999987764
No 213
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.59 E-value=2.6e-05 Score=59.27 Aligned_cols=31 Identities=13% Similarity=-0.014 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQ 55 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~ 55 (159)
++++.|+||+|+|||||+..++....+..|.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~ 91 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGV 91 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence 4689999999999999999998876554443
No 214
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.59 E-value=3.7e-05 Score=52.49 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+.+++|+|++||||||+.+.|+-.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998544
No 215
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.58 E-value=3.1e-05 Score=60.15 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 24 DREFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 24 ~~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
.+.+++++|+||+||||++..|++.+.+..+.+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 36789999999999999999999999876555433
No 216
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.57 E-value=3.3e-05 Score=55.09 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
-++|+|++|+|||||+++|.+....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 3689999999999999999976543
No 217
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.56 E-value=5.3e-05 Score=54.25 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-+++|+||+||||||+.+.|+..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999986654
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.56 E-value=2.5e-05 Score=57.97 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV 56 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i 56 (159)
+.+++++|+||+||||++..|++.+.+..+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 56899999999999999999999886654444
No 219
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.55 E-value=4.7e-05 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~ 47 (159)
-+++|+|++||||||+.+.|+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 220
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.53 E-value=5.2e-05 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
+++|+|++||||||+.+.|+-
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 678999999999999999986
No 221
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.53 E-value=5.9e-05 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+-+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999976443
No 222
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.52 E-value=3.2e-05 Score=59.50 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
+..++|+|+||+|||||+++|++.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999999987
No 223
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.51 E-value=4.2e-05 Score=55.71 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.++|+|++|||||||+++|++...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 368999999999999999987643
No 224
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.49 E-value=4.5e-05 Score=55.06 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.++.|+|++||||||+.+.|+..+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56789999999999999999988764
No 225
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.47 E-value=8.8e-05 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+|++||||||+.+.|+..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999988665
No 226
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.46 E-value=7.1e-05 Score=51.28 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++|+|++||||||+.+.|+-.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34789999999999999999976543
No 227
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.46 E-value=7.3e-05 Score=51.08 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+|+.||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999976554
No 228
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.45 E-value=8.3e-05 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++|+|++||||||+.+.|+-.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999985543
No 229
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.44 E-value=6.4e-05 Score=55.40 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+.++.|+||+||||||+.+.|.--+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999997544
No 230
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=8.9e-05 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
+..++|+|++||||||+.+.|+-.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999999876
No 231
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.43 E-value=6.6e-05 Score=57.52 Aligned_cols=34 Identities=21% Similarity=0.043 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccchhh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRA 58 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i~~ 58 (159)
...++|+|++||||||+++.|........+.+.+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 4567999999999999999998876555555443
No 232
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.43 E-value=8.2e-05 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 347899999999999999999864
No 233
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.42 E-value=0.00013 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
...++|+|++||||||+.+.|+-.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678999999999999999986654
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.41 E-value=4.7e-05 Score=59.27 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCcccch
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQV 56 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~~g~i 56 (159)
+.+++++|++|+||||++..|+..+....+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 56899999999999999999998886554443
No 235
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.41 E-value=9.3e-05 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++|+|+.|+|||||++.+.+-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.40 E-value=9.1e-05 Score=58.70 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 28 NAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.|+||||+|||||+++|++...
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999875
No 237
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.39 E-value=9.9e-05 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998765
No 238
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.34 E-value=0.00013 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 589999999999999999864
No 239
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.34 E-value=0.00011 Score=50.82 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
..+.|.||+|+|||||+++|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 567899999999999999998876543
No 240
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.32 E-value=0.00014 Score=53.64 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCCccc
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGIQVK 54 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~~~g 54 (159)
..+.|+||+|+||||+.++|+..+....+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 46889999999999999999998755433
No 241
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.32 E-value=0.00014 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6899999999999999998643
No 242
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.32 E-value=0.00015 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+-+++|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998654
No 243
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.32 E-value=0.00014 Score=47.88 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999864
No 244
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.30 E-value=0.00015 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998764
No 245
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.30 E-value=0.00017 Score=54.76 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.6
Q ss_pred CCe--EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REF--NAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~--~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
++. ++|+|++||||||+.++|+..+.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 445 88999999999999999998764
No 246
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.30 E-value=0.00015 Score=48.11 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 589999999999999999864
No 247
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.29 E-value=0.00016 Score=48.14 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 5899999999999999998653
No 248
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.29 E-value=0.00015 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
-++|+|++|+|||||++.+.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999986
No 249
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.29 E-value=0.00016 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 589999999999999999864
No 250
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.29 E-value=0.00016 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 5899999999999999998654
No 251
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=0.00016 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997643
No 252
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.00016 Score=49.46 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-+++|+|+.||||||+.+.|+-.+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999998875443
No 253
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.28 E-value=0.00016 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6899999999999999988643
No 254
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.28 E-value=0.00011 Score=53.81 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.++|+|++|+|||||++.+++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3689999999999999999875
No 255
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.28 E-value=0.00021 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
-+++|.|+.||||||+.+.|+-.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999876543
No 256
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.27 E-value=0.0002 Score=52.88 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+..+.|+||+|+|||||.++|+..+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45688999999999999999998765
No 257
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.27 E-value=0.0002 Score=49.05 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+-+++|+|+.||||||+.+.|+-.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999986543
No 258
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.27 E-value=0.00017 Score=48.35 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 589999999999999999764
No 259
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.27 E-value=0.00017 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 589999999999999999863
No 260
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.26 E-value=0.00018 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
+-+++|+|+.||||||+.+.|+-.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 567899999999999999999754
No 261
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.26 E-value=0.00017 Score=48.37 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999865
No 262
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.26 E-value=0.00021 Score=48.05 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+|+.||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999986544
No 263
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.25 E-value=0.00022 Score=58.45 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC--cccch
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI--QVKQV 56 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~--~~g~i 56 (159)
+..++|+|++|+|||||++.|.+...+ ..|++
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 457899999999999999999988765 45665
No 264
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.25 E-value=0.00024 Score=53.77 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
.+.|+||+|+|||||+++++..+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 78999999999999999999887543
No 265
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.24 E-value=0.00015 Score=48.17 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|+.|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58999999999999999976
No 266
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.24 E-value=0.00014 Score=48.69 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 689999999999999998753
No 267
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.23 E-value=0.00019 Score=49.02 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997654
No 268
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.23 E-value=0.0002 Score=48.94 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998743
No 269
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.23 E-value=0.00021 Score=47.42 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 589999999999999999863
No 270
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.22 E-value=0.00015 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.158 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|++|+|||||+++|.+..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998653
No 271
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.22 E-value=0.0002 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.++|+|+.||||||+.+.|+--+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 368999999999999999965443
No 272
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.22 E-value=0.00021 Score=47.51 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 10 i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999753
No 273
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.22 E-value=0.00018 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 274
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.21 E-value=0.00016 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
--++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999753
No 275
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.21 E-value=0.00023 Score=49.53 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
+-+++|+|+.||||||+.+.|+-.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999754
No 276
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.21 E-value=0.00021 Score=48.43 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 14 i~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999864
No 277
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.21 E-value=0.00017 Score=60.38 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
+..+.|+||+|+|||||+++|++.++..
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 4568999999999999999999987643
No 278
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.21 E-value=0.00021 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 5899999999999999998643
No 279
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.21 E-value=0.00016 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57899999999999999997653
No 280
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.21 E-value=0.00026 Score=48.61 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+-+++|+|+.||||||+.+.|+-.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999986554
No 281
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.20 E-value=0.00017 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999764
No 282
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00021 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+-+++|+|+.||||||+.+.|+--+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998544
No 283
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.20 E-value=0.00022 Score=47.72 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999754
No 284
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.20 E-value=0.00029 Score=49.59 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+..+.|.||+|+|||||+++++..+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999987654
No 285
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.20 E-value=0.00022 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6899999999999999998763
No 286
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.19 E-value=0.00025 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-+++|+|+.||||||+.+.|+--+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999986554
No 287
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.19 E-value=0.00028 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.+++|+|+.||||||+.+.|+-.+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999976543
No 288
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.19 E-value=0.00023 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 28 NAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
++|+|+.|+|||||++.+.+...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 58999999999999998887543
No 289
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.19 E-value=0.00018 Score=54.49 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++++.|.||+|+|||||+..++...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999987776543
No 290
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.19 E-value=0.00017 Score=48.02 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|+.|+|||||++.+.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58999999999999999864
No 291
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.19 E-value=0.00024 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 5899999999999999997643
No 292
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.19 E-value=0.00025 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+..+.|+||+|+|||||++.++..+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999988763
No 293
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.17 E-value=0.00025 Score=48.28 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4689999999999999999864
No 294
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.17 E-value=0.00025 Score=47.82 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3689999999999999999864
No 295
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.17 E-value=0.00019 Score=54.67 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.++|+|.+|+|||||+++|++.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999983
No 296
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00025 Score=47.61 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 5899999999999999997654
No 297
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.17 E-value=0.00017 Score=48.88 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 589999999999999998764
No 298
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.17 E-value=0.00018 Score=49.72 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
-++|+|++|+|||||++.+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999864
No 299
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.17 E-value=0.00025 Score=49.09 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
..+++|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999987544
No 300
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.16 E-value=0.00024 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++|+|+.||||||+.+.|+--+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999996544
No 301
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.16 E-value=0.00032 Score=46.90 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.++|+|+.||||||+.+.|+-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987543
No 302
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.16 E-value=0.00023 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++|+|++||||||+.+.|+-.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999975543
No 303
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.16 E-value=0.00018 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.++++|+|+.|+|||||++.|.+-
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 478999999999999999999874
No 304
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.16 E-value=0.00027 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998654
No 305
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.15 E-value=0.00026 Score=47.85 Aligned_cols=22 Identities=32% Similarity=0.293 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 5899999999999999997643
No 306
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.15 E-value=0.00025 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|++|+|||||+++|++..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999874
No 307
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.15 E-value=0.00023 Score=47.15 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 58999999999999998853
No 308
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.15 E-value=0.00021 Score=52.99 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
..++|+|++|+|||||++.+.+-
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 309
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.15 E-value=0.00026 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998754
No 310
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.15 E-value=0.00027 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999877654
No 311
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.14 E-value=0.00043 Score=54.98 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=23.2
Q ss_pred eeeecCC-CCeEEEEcCCCCcHHHHHHHHHH
Q psy17514 18 VEINDFD-REFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 18 ~~l~~~~-~~~~~liG~NGaGKSTLl~~i~~ 47 (159)
++..++. +....|.|++||||||+|++|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3333443 46789999999999999999865
No 312
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.14 E-value=0.00014 Score=55.07 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.-.++|+|++|+|||||++.+++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998654
No 313
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.13 E-value=0.00016 Score=48.81 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGIC 46 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~ 46 (159)
-++|+|++|+|||||++.+.
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999886
No 314
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.13 E-value=0.00029 Score=47.38 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 315
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.13 E-value=0.00028 Score=47.86 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999864
No 316
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.13 E-value=0.00034 Score=47.62 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+|+.||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999976543
No 317
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.13 E-value=0.00024 Score=47.60 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 689999999999999998754
No 318
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.13 E-value=0.00029 Score=48.43 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999998764
No 319
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.12 E-value=0.00028 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.107 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997554
No 320
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.12 E-value=0.0003 Score=51.53 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..-+.|.||+|+||||+.++++..+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999998764
No 321
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.0003 Score=48.15 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998643
No 322
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.12 E-value=0.0003 Score=47.86 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998653
No 323
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.11 E-value=0.0003 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 11 i~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHcC
Confidence 689999999999999999873
No 324
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.11 E-value=0.0003 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 6899999999999999998653
No 325
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.11 E-value=0.00027 Score=47.39 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|+.|+|||||++.+.+
T Consensus 12 i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999864
No 326
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.11 E-value=0.00031 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 6899999999999999998643
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.11 E-value=0.0003 Score=48.63 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+-+++|+|+.||||||+.+.|+-.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999986543
No 328
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.10 E-value=0.00034 Score=51.99 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..+.|.||+|+|||||+++|+..+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999998763
No 329
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.10 E-value=0.00024 Score=51.43 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.++|+|..|||||||++.+.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3689999999999999999875
No 330
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.09 E-value=0.00038 Score=49.48 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGIC 46 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~ 46 (159)
++.+++.||+||||||++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 6889999999999999887664
No 331
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.09 E-value=0.00034 Score=47.23 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 589999999999999999854
No 332
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.09 E-value=0.00033 Score=48.12 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|++|+|||||++.+.+.
T Consensus 9 v~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999864
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.08 E-value=0.00031 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.+++|+|++||||||+.+.|+-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999865
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.08 E-value=0.0004 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-+++|+|+.||||||+-+.|+-.+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999999987544
No 335
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.08 E-value=0.00034 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-+++|+|+.||||||+.+.|.-.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 467999999999999999998663
No 336
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.08 E-value=0.00034 Score=48.22 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 27 i~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999998754
No 337
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.08 E-value=0.00035 Score=47.11 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 589999999999999998754
No 338
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.08 E-value=0.00032 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
..+.|.||+|+|||||+++|+..+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999876
No 339
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.07 E-value=0.00034 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999987643
No 340
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.00036 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-.++|+|+.|+|||||++.+..-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998764
No 341
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.07 E-value=0.00026 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.++|+|+.|+|||||++.|.+-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 342
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.07 E-value=0.00036 Score=47.01 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 9 i~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 689999999999999998743
No 343
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.07 E-value=0.00036 Score=47.51 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998764
No 344
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.06 E-value=0.00037 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999864
No 345
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.05 E-value=0.00019 Score=52.33 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|++|+|||||+++|.+
T Consensus 11 I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999999864
No 346
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00038 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 6899999999999999998765
No 347
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.05 E-value=0.00034 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~ 47 (159)
-+++|+|+.||||||+.+.|.-
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 348
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.05 E-value=0.00038 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999998643
No 349
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.04 E-value=0.00021 Score=52.78 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-+++|.|++||||||+.+.|.-.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999876543
No 350
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.03 E-value=0.00053 Score=46.22 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
...+.|+||.|+||||+++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998765
No 351
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.03 E-value=0.00042 Score=46.61 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 11 i~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998754
No 352
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.03 E-value=0.00041 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998643
No 353
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.03 E-value=0.00041 Score=47.39 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 354
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.03 E-value=0.0005 Score=48.27 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-+++|+|+.||||||+.+.|+-.+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999976554
No 355
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.02 E-value=0.00041 Score=47.98 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999998643
No 356
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.02 E-value=0.00042 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3689999999999999999764
No 357
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.00042 Score=47.51 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 31 i~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999864
No 358
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.00042 Score=47.10 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999998653
No 359
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.01 E-value=0.00037 Score=54.92 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 28 NAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.|+||+|+|||||+++|++...
T Consensus 52 vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67999999999999999998764
No 360
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.01 E-value=0.00032 Score=51.23 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++|+|..|||||||++++.+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998753
No 361
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.01 E-value=0.0004 Score=51.03 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
++.|+|++||||||+.+.|+-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999985
No 362
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.01 E-value=0.00033 Score=50.73 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+++..
T Consensus 8 I~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 8 VALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 6899999999999999998743
No 363
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.01 E-value=0.00044 Score=48.30 Aligned_cols=26 Identities=31% Similarity=0.176 Sum_probs=21.5
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy17514 22 DFDREFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 22 ~~~~~~~~liG~NGaGKSTLl~~i~~ 47 (159)
.+.+..++|+||+|+|||||...|.-
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHHHHHHT
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHH
Confidence 34467789999999999999888763
No 364
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.00 E-value=0.00049 Score=51.88 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+||+|||||||...|+-.+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 689999999999999999987765
No 365
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.00 E-value=0.0006 Score=45.70 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..+++|+|+.||||||+-+.|+-.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999986543
No 366
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.99 E-value=0.00045 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 367
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.99 E-value=0.00053 Score=47.90 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..+.|.||.|+|||||++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999986653
No 368
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.99 E-value=0.00045 Score=47.84 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3689999999999999999864
No 369
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.98 E-value=0.00046 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 28 NAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
++|+|+.||||||+.+.|+-.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999976543
No 370
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.98 E-value=0.00034 Score=51.70 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 24 DREFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 24 ~~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+.-.++|+|+.|+|||||+++|.|..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 34568999999999999999998764
No 371
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.98 E-value=0.00038 Score=47.87 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999998754
No 372
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.97 E-value=0.00046 Score=49.44 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+-+++|+|+.||||||+.+.|+--+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999997543
No 373
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.97 E-value=0.00031 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998753
No 374
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.96 E-value=0.0004 Score=47.15 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
-++|+|+.|+|||||++.+.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999984
No 375
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.96 E-value=0.00051 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.198 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 36899999999999999987643
No 376
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.95 E-value=0.00036 Score=46.84 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999864
No 377
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.95 E-value=0.00053 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998654
No 378
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.94 E-value=0.00037 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999998643
No 379
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.93 E-value=0.00037 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999854
No 380
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.93 E-value=0.00055 Score=47.15 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6899999999999999998643
No 381
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.93 E-value=0.00052 Score=47.31 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|+.|+|||||++.+.+
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 58999999999999999864
No 382
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.92 E-value=0.00019 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-.++|+|+.|+|||||++.|.+-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 35789999999999999999765
No 383
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.00063 Score=49.47 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
.-+.|.||+|+|||||.++++..+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45789999999999999999987643
No 384
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.91 E-value=0.00037 Score=49.10 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998754
No 385
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.90 E-value=0.00044 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
--++|+|..|+|||||+++|.+..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 468999999999999999998764
No 386
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.89 E-value=0.00062 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999865
No 387
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.00064 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.+.|.||+|+||||++++++..+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 388
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.89 E-value=0.00074 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
|+..+|+||+|+|||||+..|+...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 6889999999999999999998765
No 389
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.88 E-value=0.0007 Score=50.73 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+||+|||||||-..|+.-+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 678999999999999999987654
No 390
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.88 E-value=0.00056 Score=46.78 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|+.|+|||||++.+.+
T Consensus 29 i~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999864
No 391
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.87 E-value=0.00061 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.+++|+||+|||||||...|+--+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 3678999999999999999876543
No 392
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.87 E-value=0.0005 Score=49.74 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++|+|+.|+|||||++++.+-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998643
No 393
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.87 E-value=0.00049 Score=47.23 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
-++|+|+.|+|||||++.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999997765
No 394
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.87 E-value=0.00052 Score=46.20 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
...+.|+||.|+||||+++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999998765
No 395
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.85 E-value=0.00074 Score=47.29 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-.++|+|..|+|||||+..+..-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999999988664
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.84 E-value=0.0007 Score=47.49 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-.++|+|+.||||||+.+.|+--+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999976553
No 397
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.84 E-value=0.00035 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=8.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998753
No 398
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.84 E-value=0.00083 Score=46.93 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-+++|+|+.||||||+.+.|+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999987654
No 399
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.84 E-value=0.00066 Score=47.31 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
-++|+|+.|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 368999999999999999874
No 400
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.83 E-value=0.00056 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++++|+.|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998643
No 401
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.83 E-value=0.00068 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999998753
No 402
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.83 E-value=0.00074 Score=46.59 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 32 i~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 689999999999999998754
No 403
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.82 E-value=0.00086 Score=48.00 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.-+.|.||.|+||||+.++++..+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467999999999999999988764
No 404
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.81 E-value=0.00074 Score=46.33 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
-++|+|+.|+|||||++.+.+
T Consensus 22 ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999874
No 405
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.81 E-value=0.00063 Score=52.66 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
..+++|+|++||||||+.+.|+--+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999986433
No 406
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00078 Score=47.22 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 16 i~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 589999999999999999864
No 407
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.80 E-value=0.00055 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999987654
No 408
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.80 E-value=0.0008 Score=44.19 Aligned_cols=25 Identities=16% Similarity=-0.045 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
..-+.|.||.|+|||++.++|+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3457899999999999999998754
No 409
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.79 E-value=0.00072 Score=46.15 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
-++|+|+.|+|||||++.+.+
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999864
No 410
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.79 E-value=0.00078 Score=50.20 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..+++|+||+|||||||...|+--+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 34789999999999999999986654
No 411
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.79 E-value=0.00084 Score=46.44 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+..-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3689999999999999988753
No 412
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.78 E-value=0.0011 Score=47.46 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+-+++|.|++||||||+.+.|.-.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999987654
No 413
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.78 E-value=0.00075 Score=46.24 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
-++|+|+.|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999853
No 414
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.77 E-value=0.00083 Score=47.32 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+-+++|.|+.||||||+.+.|.-.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5578999999999999999987654
No 415
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.77 E-value=0.00063 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.++++|.+|+|||||++.|.+-..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred heEEeCCCCCCHHHHHHHHhcccc
Confidence 678999999999999999986543
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.76 E-value=0.00087 Score=47.53 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+-.++|+|+.||||||+.+.|+--+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999986554
No 417
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.76 E-value=0.00091 Score=46.67 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3689999999999999998764
No 418
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.00066 Score=47.63 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|++|+|||||++.+.+
T Consensus 40 VvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999874
No 419
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.74 E-value=0.00073 Score=52.84 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
++++.|.|++|+|||||+..++....+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998876544
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.73 E-value=0.0011 Score=46.76 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+-+++|.|+.||||||+.+.|.-.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5578999999999999999987655
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.73 E-value=0.00081 Score=47.88 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+-+++|.|+.||||||+.+.|.-.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999986544
No 422
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.72 E-value=0.0011 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-+++|+|+.|+|||||+..|+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998765
No 423
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.71 E-value=0.001 Score=46.03 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 12 i~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998754
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.69 E-value=0.001 Score=50.11 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.+++|+||.|||||||-..|+--+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3789999999999999999886554
No 425
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.68 E-value=0.001 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.+.|.||.|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998654
No 426
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.66 E-value=0.00054 Score=49.43 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 28 NAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.|.||+|+|||+|.++|+....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 56899999999999999998654
No 427
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.65 E-value=0.00069 Score=46.00 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGIC 46 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~ 46 (159)
-++|+|+.|+|||||++.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999884
No 428
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.64 E-value=0.0011 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
++++.|.||+|+|||||+..++..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999988875
No 429
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.64 E-value=0.00035 Score=48.01 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=3.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
-++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999998765
No 430
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.62 E-value=0.0016 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCcHHHHH-HHHHHH
Q psy17514 25 REFNAITGLNGTGKSNIL-DGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl-~~i~~~ 48 (159)
+.+.+++||.|+||||++ +.+..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999997 554433
No 431
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.59 E-value=0.0016 Score=44.51 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=20.3
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHH
Q psy17514 22 DFDREFNAITGLNGTGKSNILDGIC 46 (159)
Q Consensus 22 ~~~~~~~~liG~NGaGKSTLl~~i~ 46 (159)
.+.+.-+.|.|++|+||||+...+.
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHH
Confidence 3456678899999999999977765
No 432
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.59 E-value=0.0012 Score=51.37 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.+++|+|++|+||||+...|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 433
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.58 E-value=0.0014 Score=46.73 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 367899999999999999998665
No 434
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.58 E-value=0.0014 Score=46.34 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..++.|+||.||||+|.-+.|+--+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 35789999999999999998875543
No 435
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.58 E-value=0.0015 Score=50.95 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+.+++++|++|+||||++..|+..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999987654
No 436
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.57 E-value=0.0021 Score=45.35 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+-+++|.|+.||||||+.+.|.-.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56889999999999999999987765
No 437
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.56 E-value=0.0013 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+++|+||+|+|||||...|+--+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 678999999999999999876554
No 438
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.56 E-value=0.00033 Score=48.80 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|+.|+|||||++.+.+
T Consensus 14 i~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999998864
No 439
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.56 E-value=0.0015 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.-+.|.||.|+|||++.++++..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999988766
No 440
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.54 E-value=0.0016 Score=45.62 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+++|+||.||||+|.-+.|+--+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4679999999999999998866543
No 441
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.53 E-value=0.0014 Score=47.38 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
-+.|.||.|+|||+|.++++....
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 467899999999999999987654
No 442
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.53 E-value=0.0017 Score=47.73 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
-.+.|.||.|+|||+|.++|+..+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35667799999999999999987753
No 443
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.51 E-value=0.0016 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+-+++|.|+.||||||+.+.|.-.+
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999987544
No 444
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.51 E-value=0.00086 Score=56.12 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+..+.|+||+|+|||||.++|++.+..
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 456789999999999999999998754
No 445
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.51 E-value=0.0017 Score=47.45 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.-+.|.||.|+|||++.++++..+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345789999999999999999987743
No 446
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.49 E-value=0.0016 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+..+.|.||.|+||||+++.++..+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998765
No 447
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.49 E-value=0.002 Score=48.14 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
++++.|.||+|+|||||...++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 578999999999999999988765
No 448
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.49 E-value=0.002 Score=48.09 Aligned_cols=25 Identities=28% Similarity=0.089 Sum_probs=21.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Q psy17514 23 FDREFNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 23 ~~~~~~~liG~NGaGKSTLl~~i~~ 47 (159)
+.+.-+.|+|++|+||||+...+..
T Consensus 142 ~~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 142 VYGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4466789999999999999888875
No 449
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.49 E-value=0.00079 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.-.++|+|++|+|||||++.|.+-
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 357899999999999999999763
No 450
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.48 E-value=0.0015 Score=55.24 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=25.1
Q ss_pred EEEEEeCeeeecCCeeeecCC-----CCeEEEEcCCCCcHHHH
Q psy17514 4 KSMVLDGFKSYGTRVEINDFD-----REFNAITGLNGTGKSNI 41 (159)
Q Consensus 4 ~~l~l~~~~~~~~~~~l~~~~-----~~~~~liG~NGaGKSTL 41 (159)
..|++++-+.++= ++++ ..+++|+|.||||||||
T Consensus 2 ~~i~i~gar~hNL----kni~~~ip~~~l~v~tG~SGSGKSsL 40 (916)
T 3pih_A 2 NEIVVKGARVHNL----KNITVRIPKNRLVVITGVSGSGKSSL 40 (916)
T ss_dssp CEEEEESBCSTTC----CSBCCEEETTSEEEEEESTTSSSHHH
T ss_pred CcEEEeCcccccc----CcceeccCCCcEEEEECCCCCcHHHH
Confidence 3467777654432 3343 68999999999999998
No 451
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.44 E-value=0.0021 Score=50.20 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
-+.|.||+|+|||||.++|+..+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 37899999999999999999887654
No 452
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.41 E-value=0.0018 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|+.|+|||||++.|.+-.
T Consensus 227 V~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
No 453
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.41 E-value=0.0013 Score=45.87 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHH-HHHH
Q psy17514 28 NAITGLNGTGKSNILDG-ICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~-i~~~ 48 (159)
++|+|+.|+|||||++. +.+-
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999998 5544
No 454
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.40 E-value=0.0022 Score=47.88 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.-+.|.||.|+|||+|.++++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 457899999999999999999876
No 455
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.39 E-value=0.0022 Score=48.48 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..-+.|.||+|+|||++.++|+..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45678999999999999999998764
No 456
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.38 E-value=0.0024 Score=47.52 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
-+.|.||.|+|||+|.++++.....
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCC
Confidence 4789999999999999999877643
No 457
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.38 E-value=0.0028 Score=47.04 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.-+.|.||.|+|||+|+.+|+..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999987655
No 458
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.37 E-value=0.0015 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy17514 28 NAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~ 49 (159)
++|+|..++|||||+++|++..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 6899999999999999998653
No 459
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.36 E-value=0.0029 Score=47.57 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
..+.|.||.|+|||++.++++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999988763
No 460
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.35 E-value=0.0028 Score=47.19 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
.+.|.||.|+|||++.++|+.....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999877643
No 461
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.34 E-value=0.0024 Score=48.23 Aligned_cols=25 Identities=32% Similarity=0.218 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.-+.|.||.|+|||||.++|+..+.
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999987764
No 462
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.34 E-value=0.0019 Score=47.42 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++|+|.+|+|||||+++|.+..
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEecCCCchHHHHHHHhcCc
Confidence 47899999999999999998643
No 463
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.33 E-value=0.00061 Score=46.95 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~ 47 (159)
++|+|+.|+|||||++.+.+
T Consensus 33 i~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 33 CVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 68999999999999988864
No 464
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.32 E-value=0.0011 Score=47.97 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+-+++|.|+.||||||+.+.|+-.+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999887554
No 465
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.31 E-value=0.0025 Score=44.56 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.+++|-|+-||||||+.+.|.-.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999998665
No 466
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.29 E-value=0.0024 Score=47.49 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
+.-+.|.||.|+|||+|.++++..+...
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4567899999999999999999877543
No 467
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.28 E-value=0.0029 Score=49.73 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
+...+|+|++|+|||||++.|..-..
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhh
Confidence 57889999999999999998876543
No 468
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0029 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 28 NAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.|.||.|+|||+|.++|+.-+..
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999987653
No 469
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.27 E-value=0.0025 Score=45.83 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..-+.|.||.|+|||++.++|+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45678999999999999999987754
No 470
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.27 E-value=0.0027 Score=53.34 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCcHHHHH
Q psy17514 25 REFNAITGLNGTGKSNIL 42 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl 42 (159)
+.+++|+|.||||||||.
T Consensus 36 ~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 36 DALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp SSEEEEESSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 689999999999999995
No 471
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.25 E-value=0.0029 Score=47.99 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
...+.|+||.|+||||+.++|+..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999998764
No 472
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.25 E-value=0.0011 Score=50.07 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.-.++|+|..++|||||+++|.|..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999998754
No 473
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.24 E-value=0.0032 Score=49.15 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
..-+.|+||.|+||||+.++|+..+..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 345789999999999999999988754
No 474
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.22 E-value=0.0033 Score=47.49 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
-+.|.||.|+|||+|.++++..+..
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3689999999999999999987653
No 475
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.0037 Score=47.12 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+..+.|.||.|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998765
No 476
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.18 E-value=0.0029 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.471 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.-+.|+||+|+|||++.++|+..+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999876
No 477
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.18 E-value=0.0014 Score=42.91 Aligned_cols=25 Identities=12% Similarity=-0.118 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.-+.|.||.|+|||++.++|+....
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 4477999999999999999875443
No 478
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.17 E-value=0.0035 Score=52.26 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
++.++|+||+||||||++.++.+....
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~~~ 135 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFDEM 135 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 578999999999999998888655433
No 479
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.16 E-value=0.0025 Score=51.12 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
-.++|+|..|+|||||+++|.+..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999998753
No 480
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.15 E-value=0.0042 Score=44.39 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 25 REFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.-+++++|+-|+||||++..|+..+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998554
No 481
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0037 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 28 NAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.|.||.|+|||+|.++|++-...
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEECcCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999987653
No 482
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0037 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 28 NAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
+.|.||.|+|||+|.++|+.-...
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 578999999999999999987654
No 483
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.14 E-value=0.0025 Score=47.17 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~ 48 (159)
++|+|+.|+|||||++.+.+-
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 589999999999999997653
No 484
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.13 E-value=0.0038 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.+++|+|++|+||||++..|+..+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998554
No 485
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.09 E-value=0.0036 Score=47.66 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 26 EFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
..++++|.+|+|||||+++|.+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 35899999999999999999987
No 486
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.09 E-value=0.003 Score=46.61 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
..+.|.||.|+||||+.++++..+.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999987653
No 487
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.06 E-value=0.0034 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 27 FNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.+.|.||.|+||||+..+|+..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987764
No 488
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.06 E-value=0.0028 Score=48.68 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~ 48 (159)
.++++|+.|+|||||+++|.+.
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4689999999999999999874
No 489
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.04 E-value=0.0025 Score=47.55 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLG 50 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~ 50 (159)
.-+.|.||.|+|||++.++++..+.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 3478999999999999999998775
No 490
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.04 E-value=0.0019 Score=50.13 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=0.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy17514 27 FNAITGLNGTGKSNILDGICF 47 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~ 47 (159)
.++|+|++|+|||||++.|.+
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
No 491
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.04 E-value=0.0038 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
++++.|.|++|+|||||...++.-
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999888753
No 492
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.99 E-value=0.0048 Score=42.79 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
+++|-|.-||||||..+.|+--+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999987554
No 493
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0048 Score=47.54 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCc
Q psy17514 28 NAITGLNGTGKSNILDGICFVLGIQ 52 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~~~~~~~ 52 (159)
+.|.||.|+|||.|.+++++-....
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 5789999999999999999877543
No 494
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.99 E-value=0.00063 Score=46.76 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy17514 28 NAITGLNGTGKSNILDGIC 46 (159)
Q Consensus 28 ~~liG~NGaGKSTLl~~i~ 46 (159)
++|+|+.|+|||||++.+.
T Consensus 36 i~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEECCTTSCCTTTTTSSB
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5899999999999998875
No 495
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.97 E-value=0.0059 Score=45.83 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhCC
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVLGI 51 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~~~ 51 (159)
..+.|.||.|+||||++++++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999877643
No 496
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.97 E-value=0.0044 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 26 EFNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 26 ~~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.-+.|.||.|+|||+|.++|+..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 346799999999999999999876
No 497
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.96 E-value=0.0048 Score=45.72 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
+.++.|.||.|+|||||++.+..-
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 468899999999999999988654
No 498
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.96 E-value=0.0034 Score=51.71 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q psy17514 27 FNAITGLNGTGKSNILDGICFVL 49 (159)
Q Consensus 27 ~~~liG~NGaGKSTLl~~i~~~~ 49 (159)
.++|+|+.|+|||||+++|.|-.
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 499
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.94 E-value=0.0048 Score=52.44 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=23.5
Q ss_pred EEEEeCeeeecCCeeeecCC-CCeEEEEcCCCCcHHHH
Q psy17514 5 SMVLDGFKSYGTRVEINDFD-REFNAITGLNGTGKSNI 41 (159)
Q Consensus 5 ~l~l~~~~~~~~~~~l~~~~-~~~~~liG~NGaGKSTL 41 (159)
.|.+++-+.++=+.+=.++. ..+++|+|.||||||||
T Consensus 23 ~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSL 60 (972)
T 2r6f_A 23 KIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSL 60 (972)
T ss_dssp EEEEEEECSSSCCSEEEEEETTSEEEEEESTTSSHHHH
T ss_pred eEEEeccccccCCceeeeccCCcEEEEECCCCCCHHHH
Confidence 45666554433222111111 68999999999999999
No 500
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.94 E-value=0.0056 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q psy17514 25 REFNAITGLNGTGKSNILDGICFV 48 (159)
Q Consensus 25 ~~~~~liG~NGaGKSTLl~~i~~~ 48 (159)
++++.|.|++|+|||||+..++.-
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999998877643
Done!