RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17514
(159 letters)
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 114 bits (285), Expect = 2e-31
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 3 IKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANTLQ 62
+ + L FKSY ++ + F +I G NG+GKSN++D I FVLG++ +R+N L+
Sbjct: 3 LVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILK 62
Query: 63 ELIYKNGQAGVTKASVTLTFDNSDKKNCP--------IGYENDNTIVICRQISIPSNTRY 114
+LIY GV + +DN + + + + + R IS +T Y
Sbjct: 63 DLIY----RGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSY 118
Query: 115 MINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH 158
I+G +V+ K S + N+ + +FL+ QG V ++ P
Sbjct: 119 KIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPV 162
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 98.1 bits (243), Expect = 8e-26
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQV-KQVRAN 59
YI+ + L GFKSYG + + F + F AI G NG+GKSNI D I FVLG K +RA+
Sbjct: 2 PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRAS 61
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
+ +LI+ + + +++ +VI R++ + Y +NG
Sbjct: 62 RISDLIFAGSK--NEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGR 119
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKP 157
+ D+ ++ ++ + + +++QG +TK + M P
Sbjct: 120 RATRSEILDILTAAMISPDG-YNIVLQGDITKFIKMSP 156
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 96.6 bits (239), Expect = 2e-25
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQV-KQVRAN 59
M +K + L GFKS+G I F AI G NG+GKSNI+D I +V G Q K++RA+
Sbjct: 1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRAS 59
Query: 60 TLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGS 119
++I+ + + EN I + R++ Y +NGS
Sbjct: 60 EKFDMIFAGSEN---------LPPAGSAYVELVFEENGEEITVARELKRTGENTYYLNGS 110
Query: 120 SVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKVLNMKPH 158
V K + D F+ L V+ + ++ QG++ +++N P
Sbjct: 111 PVRLKDIRDRFAGTGLGVDF-YSIVGQGQIDRIVNASPE 148
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 70.6 bits (171), Expect = 1e-15
Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 4/142 (2%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLGIQVKQVRANT 60
M ++ + + F+S+ + +F N I G NG+GKS++LD I L +++
Sbjct: 1 MKLERVTVKNFRSHS-DTVV-EFKEGINLIIGQNGSGKSSLLDAILVGLYWP-LRIKDIK 57
Query: 61 LQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYMINGSS 120
E + + + I +++ + + +++ SS
Sbjct: 58 KDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRL-VGNEWKHVTEPSS 116
Query: 121 VNPKRVSDLFSSVNLNVNNPHF 142
+ N+ +N +
Sbjct: 117 KAISAFMEKLIPYNIFLNAIYI 138
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 64.3 bits (155), Expect = 8e-14
Identities = 19/154 (12%), Positives = 41/154 (26%), Gaps = 20/154 (12%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVL-GIQVKQVRAN 59
+S+ L + + D D ++G NG GKS + L N
Sbjct: 2 GKFRSLTLINWNGF-FARTF-DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 59
Query: 60 TLQELI-------YKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNT 112
T + +G+ L NS + +V+ ++ +
Sbjct: 60 TTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQ----------RVVVGVRLQQVAGR 109
Query: 113 RYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQ 146
++ + + L + +
Sbjct: 110 DRKVDIKPFAIQGLPMSVQPTQLVTETLNERQAR 143
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 55.2 bits (131), Expect = 2e-10
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1 MYIKSMVLDGFKSYGTRVEINDFDREFNAITGLNGTGKSNILDGICFVLG 50
M ++ + + F+S+ + +F N I G NG+GKS++LD I L
Sbjct: 1 MKLERVTVKNFRSHS-DTVV-EFKEGINLIIGQNGSGKSSLLDAILVGLY 48
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 31.8 bits (72), Expect = 0.027
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN 59
YG I D + + G NG GK+ L I ++ Q ++ N
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 30.7 bits (69), Expect = 0.048
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVR 57
K++G V D + EF G +G GKS +L I + I +
Sbjct: 8 KAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 30.3 bits (68), Expect = 0.071
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVR 57
K +G + + EF + G +G GK+ L I + Q+
Sbjct: 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 30.3 bits (68), Expect = 0.074
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGIC 46
K +G ++ + I G NG+GKS +++ I
Sbjct: 12 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 51
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 30.0 bits (67), Expect = 0.090
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGIC 46
K G + + E + G NG GK+ L I
Sbjct: 10 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS 49
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 29.4 bits (66), Expect = 0.13
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNIL 42
K YG + + +I G +G+GKS L
Sbjct: 10 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFL 45
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 29.4 bits (66), Expect = 0.13
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNIL 42
K +G +N + EF + G +G GK+ L
Sbjct: 14 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTL 49
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.9 bits (64), Expect = 0.21
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVR 57
+ + +++ E+ I G G GK+ L+ I ++
Sbjct: 9 RKWKNFS-LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 28.1 bits (62), Expect = 0.44
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 1 MYIKSMVLDGFKSYGT-RVEIN-DFDREFNAITGLNGTGKSNIL 42
M++K + K G R+ ++ + R++ + G G GKS L
Sbjct: 1 MFLK---VRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFL 41
>d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 268
Score = 28.0 bits (62), Expect = 0.45
Identities = 6/44 (13%), Positives = 10/44 (22%)
Query: 99 TIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHF 142
T+ + R+ G+ P S P
Sbjct: 130 TLSPHTSGAHGLLVRWCPTGTPTKPTTQVLHEVSSLSEGRTPQV 173
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 27.6 bits (61), Expect = 0.62
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 12 KSYGTRVEINDFD-----REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN 59
Y V + G NG GK+ +L I L ++ N
Sbjct: 10 VGYDKPV-LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.8 bits (59), Expect = 1.3
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 16/70 (22%)
Query: 12 KSYGTRVEI-NDFD-----REFNAITGLNGTGKSNIL----------DGICFVLGIQVKQ 55
+Y +I D A G +G GKS I G + G +
Sbjct: 9 FAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN 68
Query: 56 VRANTLQELI 65
+ + I
Sbjct: 69 ISLENWRSQI 78
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 1.9
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 29 AITGLNGTGKSNILDGICFVLGIQVKQVRANTLQELIYKNG 69
++G G+GKS I + + + G+ ++ L I
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGR 48
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.1 bits (56), Expect = 2.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 29 AITGLNGTGKSNILDGICFVLGIQVKQVR 57
ITG G GK+ ++ I LG +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFW 32
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.1 bits (56), Expect = 2.0
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 30 ITGLNGTGKSNILDGICFVLGIQVKQVR 57
+TG G GK+ ++ VL V
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 26.0 bits (57), Expect = 2.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 26 EFNAITGLNGTGKSNILDGIC 46
E AITG G+GK+++L I
Sbjct: 63 EMLAITGSTGSGKTSLLMLIL 83
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 25.5 bits (56), Expect = 2.7
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 26 EFNAITGLNGTGKSNIL----------DGICFVLGIQVKQVRANTLQELI 65
E A G++G GKS ++ G + G +K +L+ I
Sbjct: 45 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 94
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 23.5 bits (51), Expect = 2.9
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 83 DNSDKKNCPI 92
D SD+ +CP+
Sbjct: 30 DGSDEASCPV 39
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 25.2 bits (55), Expect = 3.9
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 26 EFNAITGLNGTGKSNILDGICFVLGIQVKQVR 57
+ A+ G +G+GKS I I I +
Sbjct: 42 KTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 24.9 bits (54), Expect = 4.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 EFNAITGLNGTGKSNILDGIC 46
E + G NG GKS +L +
Sbjct: 26 EILHLVGPNGAGKSTLLARMA 46
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 24.9 bits (53), Expect = 4.4
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 8/84 (9%)
Query: 29 AITGLNGTGKSNILDGICFVL---GIQVKQVRANTLQ-----ELIYKNGQAGVTKASVTL 80
+TG+ G G + L G+ K V ++ E + + + K
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 64
Query: 81 TFDNSDKKNCPIGYENDNTIVICR 104
I + V
Sbjct: 65 QKRIQKMAGRKIAEMAKESPVAVD 88
>d1tme1_ b.121.4.1 (1:) Theilovirus capsid proteins {Theiler's
murine encephalomyelitis virus, strain da [TaxId:
12124]}
Length = 256
Score = 24.9 bits (54), Expect = 4.8
Identities = 8/54 (14%), Positives = 20/54 (37%)
Query: 99 TIVICRQISIPSNTRYMINGSSVNPKRVSDLFSSVNLNVNNPHFLIMQGRVTKV 152
T+ ++ S R+ G+ + ++ NPH ++ T++
Sbjct: 130 TVSALGTDTVASVLRWAPTGAPADVTDQLIGYTPSLGETRNPHMWLVGAGNTQI 183
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.0 bits (54), Expect = 5.0
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 12 KSY--GTRVEINDFD-----REFNAITGLNGTGKSNIL 42
K + G V +++ + E I G +G GK+ +
Sbjct: 11 KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM 48
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 24.9 bits (54), Expect = 5.5
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 26 EFNAITGLNGTGKSNILDGICFVLGIQVKQVR 57
E I G +G+GKS + I + QV
Sbjct: 30 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 24.9 bits (54), Expect = 5.7
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 25/107 (23%)
Query: 12 KSYGTRVE---INDFD-----REFNAITGLNGTGKSNILDGIC----------FVLGIQV 53
+Y R + + E A+ G NG+GKS + + + G +
Sbjct: 19 FAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPL 78
Query: 54 KQVRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTI 100
Q L + GQ F S ++N G T+
Sbjct: 79 PQYEHRYLHRQVAAVGQE-------PQVFGRSLQENIAYGLTQKPTM 118
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 24.5 bits (53), Expect = 6.2
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 25 REFNAITGLNGTGKSNILDGICFVLGIQVKQVRAN 59
R + G TGK+NI + I + N
Sbjct: 104 RNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTN 138
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase,
C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 24.2 bits (52), Expect = 8.6
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 56 VRANTLQELIYKNGQAGVTKASVTLTFDNSDKKNCPIGYENDNTIVICRQISIPSNTRYM 115
VR T + ++ +AG T+ V ++ + + +I S+ R
Sbjct: 115 VRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEELIASSHSV-DEIRQE 173
Query: 116 INGSSVNPKRVSDLFSSVNLNVNNP 140
I +++ V L + ++
Sbjct: 174 IGADTLSFLSVEGLLKGIGRKYDDS 198
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.389
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 560,999
Number of extensions: 23931
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 40
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.4 bits)