BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17515
(1061 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LIA|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z2
pdb|3LIA|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z2
Length = 291
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 37/192 (19%)
Query: 394 VMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANL 453
V+ PL+ Y + Y+ GK +TL EG MVS +P+F +
Sbjct: 114 VIIEPLVHYDSSD--YYQLPKTTGK-DTLTEPYFYEGIFMVSYDSPIF-------KNGEF 163
Query: 454 LGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDL 513
G+A VDVP++ + + + GY+F+V+N G + HP + E+ + ++ D+
Sbjct: 164 AGIAGVDVPLEYVDDVASSIRTFDTGYAFMVSNTGIFLSHPTQKNWIGEK---SLSDFDV 220
Query: 514 SEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPI 573
E++ S++ +EG + H + +T + FY P+
Sbjct: 221 EEIKNAASDI-------------------REG-----IGGHVEIKDPITGKTVIMFYEPV 256
Query: 574 EGTPYSLGLALP 585
+ +S L +P
Sbjct: 257 KTGDFSFVLVVP 268
>pdb|3LI8|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z2
pdb|3LI9|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z2
Length = 291
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 37/192 (19%)
Query: 394 VMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANL 453
V+ PL+ Y + Y+ GK +TL EG VS +P+F +
Sbjct: 114 VIIEPLVHYDSSD--YYQLPKTTGK-DTLTEPYFYEGIFXVSYDSPIF-------KNGEF 163
Query: 454 LGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDL 513
G+A VDVP++ + + + GY+F V+N G + HP + E+ + ++ D+
Sbjct: 164 AGIAGVDVPLEYVDDVASSIRTFDTGYAFXVSNTGIFLSHPTQKNWIGEK---SLSDFDV 220
Query: 514 SEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPI 573
E++ S++ +EG + H + +T + FY P+
Sbjct: 221 EEIKNAASDI-------------------REG-----IGGHVEIKDPITGKTVIXFYEPV 256
Query: 574 EGTPYSLGLALP 585
+ +S L +P
Sbjct: 257 KTGDFSFVLVVP 268
>pdb|3C8C|A Chain A, Crystal Structure Of Mcp_n And Cache Domains Of Methyl-
Accepting Chemotaxis Protein From Vibrio Cholerae
pdb|3C8C|B Chain B, Crystal Structure Of Mcp_n And Cache Domains Of Methyl-
Accepting Chemotaxis Protein From Vibrio Cholerae
Length = 240
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 407 PLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQI 466
P Y + G T +D G+++VSV+TPV D + LG DV + ++
Sbjct: 93 PWYKDAKNAGKLVITAPYADSASGEILVSVATPVKD-----SATGQFLGSIFYDVSLAEL 147
Query: 467 QKLVPQYKLGPNGYSFVVNNNGRIIYHP 494
+LV + KL GY F+V+ +G I HP
Sbjct: 148 AELVNEVKLFDAGYVFIVSEDGTTIAHP 175
>pdb|3LIB|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|E Chain E, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|F Chain F, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|G Chain G, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|H Chain H, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|I Chain I, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
pdb|3LIB|J Chain J, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Mmhk1s-Z3
Length = 290
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 429 EGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNG 488
EG MVS +P+ + G+ VDV ++ + ++V + + GY+F+V+N+G
Sbjct: 145 EGVFMVSYVSPIM-------KEGEFAGIGGVDVSLEYVDEVVSKVRTFDTGYAFMVSNSG 197
Query: 489 RIIYHP 494
I+ HP
Sbjct: 198 VILSHP 203
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 558 MRRVTSRRHRYFYHPIEGTPYSLGLALPDGYG--LYEVLKE----EEIKLSA----VNAT 607
+ RV + R PI GT GL PDG+G + EVLK+ E+K ++ A
Sbjct: 214 IERVKATLPRLGELPIGGTAVGTGLNAPDGFGAKVVEVLKQSTGLSELKTASDSFEAQAA 273
Query: 608 RSGLIRWKEHVGSVPGSGAEFAEQNR 633
R GL+ + ++ S + A R
Sbjct: 274 RDGLVEGSGALKTIAASLTKIANDIR 299
>pdb|1QUA|A Chain A, Crystal Structure Of Acutolysin-c, A Hemorrhagic Toxin
From The Snake Venom Of Agkistrodon Acutus, At 2.2 A
Resolution
Length = 197
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 36/144 (25%)
Query: 231 NLARATINVILDTLG-----SNDFVNIFTFSDVTVELVPCYRE--MLVQATDENKRTLKA 283
N +++N+++ G + D + + + S T++L +RE +L + +++N + L A
Sbjct: 40 NAIYSSLNLVITLSGIEMWSAADLITVQSSSRNTLKLFASWRETDLLKRTSNDNAQLLTA 99
Query: 284 ALANVKGDNVA-----------------------NFTGALATAFEILHK--YNRTNQGCQ 318
N G+ V A+ A E+ H N GC
Sbjct: 100 T--NFNGNTVGLAYLKTMCNSKYSVGLIQDHSAIPLLMAVTMAHELGHNLGMNHDGAGCS 157
Query: 319 CNQAIM--LVSSGPPSAFKEVFKH 340
C IM ++SSGP +F + KH
Sbjct: 158 CATCIMAPVLSSGPAKSFSDCSKH 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,190,450
Number of Sequences: 62578
Number of extensions: 1296586
Number of successful extensions: 3148
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3143
Number of HSP's gapped (non-prelim): 10
length of query: 1061
length of database: 14,973,337
effective HSP length: 109
effective length of query: 952
effective length of database: 8,152,335
effective search space: 7761022920
effective search space used: 7761022920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)