Query psy17515
Match_columns 1061
No_of_seqs 635 out of 2924
Neff 6.8
Searched_HMMs 46136
Date Sat Aug 17 00:33:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2353|consensus 100.0 5E-144 1E-148 1330.0 51.2 938 2-1054 6-1090(1104)
2 PF08399 VWA_N: VWA N-terminal 100.0 9.7E-31 2.1E-35 252.3 6.8 116 70-186 1-123 (123)
3 cd01463 vWA_VGCC_like VWA Volt 100.0 1.3E-28 2.7E-33 259.1 20.4 182 200-381 1-189 (190)
4 PF13768 VWA_3: von Willebrand 99.9 4.6E-22 9.9E-27 202.1 16.4 152 213-376 1-154 (155)
5 cd01461 vWA_interalpha_trypsin 99.9 9E-21 2E-25 194.9 17.1 167 212-388 2-169 (171)
6 cd01466 vWA_C3HC4_type VWA C3H 99.8 1.9E-20 4.2E-25 190.7 17.1 154 213-378 1-154 (155)
7 TIGR03788 marine_srt_targ mari 99.8 2.1E-20 4.5E-25 229.2 16.3 184 209-401 268-451 (596)
8 cd01456 vWA_ywmD_type VWA ywmD 99.8 8.2E-19 1.8E-23 187.1 16.1 164 209-380 17-202 (206)
9 cd01465 vWA_subgroup VWA subgr 99.8 1.6E-18 3.4E-23 178.2 17.5 162 214-386 2-168 (170)
10 cd01470 vWA_complement_factors 99.8 1.8E-18 4E-23 183.2 15.7 167 214-385 2-194 (198)
11 cd01480 vWA_collagen_alpha_1-V 99.7 2.6E-17 5.7E-22 172.7 16.6 155 211-378 1-170 (186)
12 cd01472 vWA_collagen von Wille 99.7 2.9E-17 6.3E-22 168.6 16.1 155 213-378 1-160 (164)
13 TIGR00868 hCaCC calcium-activa 99.7 9.9E-17 2.2E-21 197.8 17.2 170 202-384 294-466 (863)
14 PRK13685 hypothetical protein; 99.7 1.2E-16 2.7E-21 182.0 16.2 165 211-386 87-281 (326)
15 cd01464 vWA_subfamily VWA subf 99.7 3.3E-16 7.1E-21 162.8 14.5 147 212-370 3-160 (176)
16 cd01471 vWA_micronemal_protein 99.7 6.4E-16 1.4E-20 161.9 13.9 150 213-371 1-161 (186)
17 cd01451 vWA_Magnesium_chelatas 99.7 1.6E-15 3.6E-20 158.0 15.8 154 215-382 3-168 (178)
18 cd01474 vWA_ATR ATR (Anthrax T 99.6 2.8E-15 6.1E-20 157.2 15.0 161 211-383 3-169 (185)
19 cd01477 vWA_F09G8-8_type VWA F 99.6 8.5E-15 1.8E-19 154.4 17.1 151 209-369 16-183 (193)
20 cd01475 vWA_Matrilin VWA_Matri 99.6 6.8E-15 1.5E-19 159.1 15.1 165 211-385 1-173 (224)
21 cd01453 vWA_transcription_fact 99.6 6.3E-15 1.4E-19 154.3 14.0 159 213-388 4-175 (183)
22 cd01482 vWA_collagen_alphaI-XI 99.6 1.3E-14 2.8E-19 149.1 15.6 150 213-373 1-155 (164)
23 cd01469 vWA_integrins_alpha_su 99.6 1.8E-14 4E-19 150.1 16.1 159 214-382 2-172 (177)
24 cd01467 vWA_BatA_type VWA BatA 99.6 3.3E-14 7.2E-19 147.8 18.0 154 212-383 2-179 (180)
25 PF13519 VWA_2: von Willebrand 99.6 3.1E-15 6.8E-20 152.8 9.9 155 214-386 1-167 (172)
26 cd01450 vWFA_subfamily_ECM Von 99.6 2.3E-14 5E-19 145.0 15.9 149 214-374 2-158 (161)
27 cd01462 VWA_YIEM_type VWA YIEM 99.6 1.9E-14 4.1E-19 145.8 14.3 142 213-368 1-145 (152)
28 cd01473 vWA_CTRP CTRP for CS 99.6 3.8E-14 8.3E-19 149.6 15.3 147 214-370 2-161 (192)
29 cd01476 VWA_integrin_invertebr 99.6 5.8E-14 1.3E-18 143.7 16.1 153 214-375 2-161 (163)
30 TIGR03436 acidobact_VWFA VWFA- 99.5 3.5E-14 7.5E-19 159.9 14.3 163 211-389 52-248 (296)
31 cd01454 vWA_norD_type norD typ 99.5 1.9E-13 4.1E-18 141.8 15.0 142 214-368 2-166 (174)
32 smart00327 VWA von Willebrand 99.5 6.1E-13 1.3E-17 136.5 16.9 156 212-377 1-164 (177)
33 PF00092 VWA: von Willebrand f 99.5 9.5E-14 2.1E-18 143.1 9.9 162 214-385 1-172 (178)
34 cd01481 vWA_collagen_alpha3-VI 99.5 6.7E-13 1.5E-17 136.8 16.0 150 213-372 1-157 (165)
35 PF02743 Cache_1: Cache domain 99.5 9E-14 1.9E-18 125.9 8.4 75 410-500 1-75 (81)
36 PRK13406 bchD magnesium chelat 99.5 4.3E-13 9.2E-18 162.3 16.2 158 210-381 399-570 (584)
37 PTZ00441 sporozoite surface pr 99.5 4.1E-13 8.9E-18 158.2 14.1 169 210-388 40-223 (576)
38 TIGR02031 BchD-ChlD magnesium 99.4 2.3E-12 5E-17 157.3 16.2 157 211-382 406-584 (589)
39 COG1240 ChlD Mg-chelatase subu 99.4 4.3E-12 9.4E-17 135.2 14.4 164 210-384 76-250 (261)
40 cd01455 vWA_F11C1-5a_type Von 99.4 6.8E-12 1.5E-16 130.3 14.5 162 213-387 1-181 (191)
41 cd01457 vWA_ORF176_type VWA OR 99.4 6.3E-12 1.4E-16 133.5 14.5 148 212-370 2-165 (199)
42 cd00198 vWFA Von Willebrand fa 99.4 1.7E-11 3.6E-16 122.5 16.3 146 213-371 1-155 (161)
43 PRK15426 putative diguanylate 99.3 4E-11 8.6E-16 147.0 18.0 150 391-597 199-355 (570)
44 COG4245 TerY Uncharacterized p 99.3 2.5E-11 5.5E-16 122.6 12.7 150 214-375 5-166 (207)
45 TIGR02442 Cob-chelat-sub cobal 99.3 6.3E-11 1.4E-15 146.3 16.4 156 210-378 463-632 (633)
46 cd01452 VWA_26S_proteasome_sub 99.2 3.1E-10 6.7E-15 118.6 14.9 145 214-370 5-160 (187)
47 PF08473 VGCC_alpha2: Neuronal 99.2 7.8E-11 1.7E-15 105.1 7.2 70 532-602 10-81 (94)
48 COG2425 Uncharacterized protei 99.1 6.4E-10 1.4E-14 128.4 12.3 144 193-358 261-407 (437)
49 PRK10997 yieM hypothetical pro 98.9 7.4E-09 1.6E-13 121.9 14.7 137 209-360 320-460 (487)
50 cd01460 vWA_midasin VWA_Midasi 98.9 9.4E-09 2E-13 113.0 14.2 146 202-358 48-205 (266)
51 cd01458 vWA_ku Ku70/Ku80 N-ter 98.8 3.9E-08 8.4E-13 106.1 13.7 142 213-358 2-173 (218)
52 PF10138 vWA-TerF-like: vWA fo 98.8 1.5E-07 3.3E-12 98.5 17.1 143 214-369 3-154 (200)
53 PF11775 CobT_C: Cobalamin bio 98.2 1.2E-05 2.7E-10 84.9 11.3 139 213-358 13-188 (219)
54 PF09967 DUF2201: VWA-like dom 98.1 8.4E-06 1.8E-10 80.4 8.4 94 215-333 1-96 (126)
55 PF05762 VWA_CoxE: VWA domain 98.1 8.8E-06 1.9E-10 88.2 8.5 107 210-333 55-163 (222)
56 COG2304 Uncharacterized protei 97.9 0.00022 4.7E-09 83.6 16.2 164 205-379 30-199 (399)
57 TIGR01651 CobT cobaltochelatas 97.8 0.00013 2.7E-09 87.2 12.0 133 213-358 393-568 (600)
58 cd01468 trunk_domain trunk dom 97.8 0.00062 1.4E-08 74.6 16.8 159 211-379 2-222 (239)
59 COG4867 Uncharacterized protei 97.7 0.00022 4.8E-09 80.3 11.7 144 210-377 461-632 (652)
60 PF04056 Ssl1: Ssl1-like; Int 97.7 0.00024 5.1E-09 74.8 10.4 154 218-388 1-169 (193)
61 cd01459 vWA_copine_like VWA Co 97.6 0.00096 2.1E-08 73.5 15.1 154 211-369 30-206 (254)
62 PRK15347 two component system 97.6 0.00028 6.2E-09 91.7 11.7 85 389-497 149-236 (921)
63 PF04811 Sec23_trunk: Sec23/Se 97.5 0.00028 6.1E-09 77.5 9.1 160 211-380 2-225 (243)
64 cd01478 Sec23-like Sec23-like: 97.5 0.0038 8.3E-08 69.6 18.0 163 211-380 2-255 (267)
65 cd01479 Sec24-like Sec24-like: 97.5 0.001 2.2E-08 73.2 12.7 159 211-379 2-219 (244)
66 KOG3768|consensus 97.4 0.00057 1.2E-08 79.8 9.4 159 215-385 4-218 (888)
67 KOG2353|consensus 97.3 0.00017 3.7E-09 92.5 4.0 169 793-991 622-806 (1104)
68 PF04285 DUF444: Protein of un 97.2 0.0018 3.9E-08 75.7 10.7 119 194-333 227-349 (421)
69 PF03731 Ku_N: Ku70/Ku80 N-ter 97.1 0.0021 4.5E-08 69.6 10.2 139 215-355 2-172 (224)
70 PF11443 DUF2828: Domain of un 97.1 0.0024 5.3E-08 76.6 10.5 110 211-332 339-449 (534)
71 PRK05325 hypothetical protein; 97.0 0.0032 6.8E-08 73.1 10.5 119 194-333 203-325 (401)
72 TIGR02877 spore_yhbH sporulati 96.9 0.0042 9E-08 71.0 9.8 120 193-333 182-305 (371)
73 KOG2807|consensus 96.9 0.0043 9.3E-08 68.3 9.3 158 212-386 60-230 (378)
74 PLN00162 transport protein sec 96.9 0.022 4.8E-07 72.4 17.0 169 205-380 117-376 (761)
75 PF07002 Copine: Copine; Inte 96.7 0.016 3.4E-07 58.7 11.2 126 228-356 11-146 (146)
76 PF06707 DUF1194: Protein of u 96.6 0.019 4.2E-07 60.9 12.0 136 213-358 4-157 (205)
77 COG4548 NorD Nitric oxide redu 96.6 0.0027 5.8E-08 74.2 6.0 135 213-358 447-601 (637)
78 KOG1327|consensus 96.4 0.032 7E-07 66.4 13.1 155 211-369 284-463 (529)
79 COG2718 Uncharacterized conser 96.3 0.02 4.3E-07 64.9 10.3 120 193-334 227-350 (423)
80 COG4547 CobT Cobalamin biosynt 96.3 0.0084 1.8E-07 68.8 7.2 139 215-360 416-591 (620)
81 PF11265 Med25_VWA: Mediator c 95.9 0.075 1.6E-06 57.3 11.7 118 210-332 11-151 (226)
82 PF02743 Cache_1: Cache domain 95.8 0.019 4E-07 51.8 5.9 75 658-749 2-76 (81)
83 smart00187 INB Integrin beta s 95.6 0.063 1.4E-06 62.7 10.4 126 205-332 92-242 (423)
84 KOG2884|consensus 95.4 0.2 4.4E-06 52.8 12.1 134 212-358 3-147 (259)
85 COG3552 CoxE Protein containin 95.2 0.038 8.2E-07 62.7 6.7 112 206-334 212-326 (395)
86 COG5148 RPN10 26S proteasome r 95.2 0.29 6.2E-06 50.5 12.2 142 212-364 3-153 (243)
87 TIGR00627 tfb4 transcription f 95.1 0.14 3E-06 57.4 10.6 172 213-388 3-217 (279)
88 TIGR00578 ku70 ATP-dependent D 94.9 0.14 3E-06 63.5 11.3 141 213-357 11-183 (584)
89 PF03850 Tfb4: Transcription f 94.6 0.4 8.8E-06 53.7 12.9 173 213-386 2-213 (276)
90 PTZ00395 Sec24-related protein 94.5 0.2 4.4E-06 65.0 11.3 158 210-377 950-1177(1560)
91 COG3864 Uncharacterized protei 94.3 0.16 3.5E-06 56.2 8.6 94 214-334 263-357 (396)
92 PRK15426 putative diguanylate 94.0 0.33 7.2E-06 59.8 11.8 93 635-745 202-295 (570)
93 KOG1985|consensus 93.9 0.7 1.5E-05 57.4 13.7 157 209-374 291-504 (887)
94 COG1721 Uncharacterized conser 93.9 0.35 7.5E-06 57.6 11.1 107 210-332 222-335 (416)
95 TIGR03785 marine_sort_HK prote 92.7 0.44 9.6E-06 60.6 10.2 40 452-492 247-286 (703)
96 PF08269 Cache_2: Cache domain 91.3 0.15 3.2E-06 47.5 2.7 34 463-496 41-74 (95)
97 KOG1984|consensus 90.7 1.6 3.5E-05 54.5 11.2 102 209-311 414-546 (1007)
98 COG5151 SSL1 RNA polymerase II 90.2 0.98 2.1E-05 49.9 8.0 157 212-384 87-259 (421)
99 PF00362 Integrin_beta: Integr 89.7 0.39 8.4E-06 57.2 4.9 125 206-332 96-245 (426)
100 COG5242 TFB4 RNA polymerase II 89.5 14 0.00031 39.5 15.4 175 202-383 11-217 (296)
101 KOG4465|consensus 89.4 0.37 8.1E-06 54.0 4.1 139 184-342 400-546 (598)
102 COG4191 Signal transduction hi 86.7 1.2 2.6E-05 54.0 6.3 59 430-500 154-213 (603)
103 COG4564 Signal transduction hi 86.0 1.5 3.3E-05 49.3 6.3 102 464-588 80-183 (459)
104 KOG1986|consensus 85.3 24 0.00051 43.8 16.1 162 211-380 120-363 (745)
105 PRK10841 hybrid sensory kinase 84.3 7.4 0.00016 51.3 12.7 68 403-494 165-234 (924)
106 PF10388 YkuI_C: EAL-domain as 80.0 1.9 4.1E-05 44.7 3.9 54 393-467 102-160 (166)
107 KOG2487|consensus 77.8 26 0.00057 38.7 11.7 168 211-383 22-230 (314)
108 COG5028 Vesicle coat complex C 75.0 43 0.00093 42.1 13.7 156 209-374 273-480 (861)
109 KOG1226|consensus 74.6 7 0.00015 48.7 7.1 128 205-332 125-274 (783)
110 COG5271 MDN1 AAA ATPase contai 74.0 20 0.00042 48.9 10.8 177 211-401 4391-4574(4600)
111 KOG2326|consensus 68.2 59 0.0013 39.9 12.5 141 213-358 5-167 (669)
112 PRK11086 sensory histidine kin 57.4 26 0.00056 42.5 7.6 37 464-500 79-116 (542)
113 PF14827 Cache_3: Sensory doma 55.8 44 0.00095 32.2 7.4 26 477-502 38-63 (116)
114 COG4191 Signal transduction hi 48.3 94 0.002 38.4 9.9 114 637-779 131-246 (603)
115 PF01882 DUF58: Protein of unk 46.0 34 0.00073 30.9 4.6 42 210-251 38-85 (86)
116 PF14827 Cache_3: Sensory doma 36.0 49 0.0011 31.9 4.3 30 430-465 86-115 (116)
117 KOG0071|consensus 34.5 1.5E+02 0.0033 30.1 7.2 95 200-309 73-175 (180)
118 TIGR02921 PEP_integral PEP-CTE 31.6 97 0.0021 38.0 6.3 57 319-377 727-787 (952)
119 PF06667 PspB: Phage shock pro 24.2 91 0.002 28.2 3.5 28 40-68 39-66 (75)
120 PRK09458 pspB phage shock prot 24.0 96 0.0021 27.9 3.5 29 40-69 39-67 (75)
121 PF08348 PAS_6: YheO-like PAS 20.7 2.6E+02 0.0055 27.4 6.2 35 429-469 78-112 (118)
No 1
>KOG2353|consensus
Probab=100.00 E-value=5.1e-144 Score=1330.01 Aligned_cols=938 Identities=38% Similarity=0.638 Sum_probs=796.2
Q ss_pred hhhHHHHHHHHHHHHHhhcCHHHHHHHhcc--cCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q psy17515 2 KNWALKFGIDLWEFGRHFTNVNEIQRKYQD--RDATVVRKDGLVLIRELAAEVKNMIDIKINTVMRILESAEQAALSQKS 79 (1061)
Q Consensus 2 ~~wa~~~~~~l~~~~~~~~~~~~l~~~y~~--~~~~~~~~dg~~lv~~~a~~~~~~l~~k~~av~~l~~~ae~~~~~~~~ 79 (1061)
+.||.++...+..+.+...|...+..+|+. ..+..++.|+..+++..+.+++.+|..|.+++.|++.+||+....|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~e~~~~~~se~~~r~~~~ae~~~~~~~~ 85 (1104)
T KOG2353|consen 6 PSIASKLRKISVTLLRTFSGVEQFAIAQFSYNKLADNEKQNPRNLVQEVKNDLELLLSVKSEALRRLARSAEAVSLRHEN 85 (1104)
T ss_pred HHHHHHHHhhhccchhhhhhhhhhHHHHHHHHhhhhhhccCcchhhhhhhcchhHHHHHhHHHHHHHHHHHHHHHhhhhh
Confidence 579999999999999999999999999888 458889999999999999999999999999999999999999988865
Q ss_pred ---CCCCCceeeccccc-cCCCCCCC-CCCCC--ccccccCCCCCccccccceeeeeeCCCCCCCCCHHHHhhhccccch
Q psy17515 80 ---DSSSNVKYLDSRKL-LHIPIHEK-PTSAN--EMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQILNAIKWSEHL 152 (1061)
Q Consensus 80 ---~~~~~~~y~~~~~~-~~~~~~~~-~~~~~--~~~l~~~~~F~~~~Vn~~~s~v~vpt~v~~~~~~~v~~~i~ws~~L 152 (1061)
+....+.|+.++.- ....++.. .+.++ .+.|+++.||+++|||++.|+||||+++ |+++|+|++++.||++|
T Consensus 86 ~~d~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~pV~~s~ssVhipt~~-y~~~~~vl~~~~WS~~l 164 (1104)
T KOG2353|consen 86 RVDPQSKYFVYYLAKEDAEDEDEDQEDWELGKRASMILEPDDHFYNTPVNTSHSSVHIPTNI-YDRSPDVLNAIDWSEHL 164 (1104)
T ss_pred hccccccceeEecccccccccchhhhhhhhhhcccccccchhhhccCceeeeecceeccccc-cccCHHHHhhcccccch
Confidence 55566777766532 11222222 22233 4899999999999999999999999999 99999999999999999
Q ss_pred HHHHhhhccCCCCccccccccCCcccccCCCCCCCCC-CCCCCccccccCccceeeccCCCceEEEEEccCCCCCcchHH
Q psy17515 153 DPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKWPVD-GVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRN 231 (1061)
Q Consensus 153 d~~F~~n~~~dp~l~wQyfgS~~G~~r~yPa~~w~~~-~~~~~~~yD~R~R~Wyi~aa~~pkdVVILlD~SGSM~g~~l~ 231 (1061)
|.+|++|+++||+|.||||||++|++|+|||.+|.++ ..+.+++||||+|+||+++|++||||+||+|+||||+|.+++
T Consensus 165 d~vf~~N~~~dP~l~wQ~Fgs~tG~~R~yPa~~W~~~~~~~~idl~D~R~r~Wyi~aAt~pKdiviLlD~SgSm~g~~~~ 244 (1104)
T KOG2353|consen 165 DFVFRDNRESDPTLSWQYFGSATGLLRYYPAAAWFDNNTDNSIDLYDCRNRSWYIQAATSPKDIVILLDVSGSMSGLRLD 244 (1104)
T ss_pred hHHHhhccccCchhhHHHhhhhhhhhhhCCCccCccCCCCCcceeeecccccccccccCCccceEEEEeccccccchhhH
Confidence 9999999999999999999999999999999999975 456899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcc
Q psy17515 232 LARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYN 311 (1061)
Q Consensus 232 ~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~ 311 (1061)
+||.++..||++|+++|+|+|++|++++..++||+.++++|||..|++.++++|+.+.+.|.|++..||++||++|.+.+
T Consensus 245 lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n 324 (1104)
T KOG2353|consen 245 LAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYN 324 (1104)
T ss_pred HHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCC---CceEEEEEeCCCCCcHHHHHHhhCCCCCCeeEEEEEecCC-chhhhhhhhhccCCccceeeeccccccce
Q psy17515 312 RTNQGCQ---CNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIKNTDRLRMK 387 (1061)
Q Consensus 312 ~~~~~~~---~~~~IvLlTDG~~~~~~~i~~~~n~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~~~~dv~e~ 387 (1061)
.++.++. |+++|||+|||.+++..++|+++||..++||||||.||.+ ++...++||||.|+|+|.+|.+.+++++.
T Consensus 325 ~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn~~~~~Vrvftflig~~~~~~~~~~wmac~n~gyy~~I~~~~~v~~~ 404 (1104)
T KOG2353|consen 325 DSRANTQRSPCNQAIMLITDGVDENAKEIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQWMACANKGYYVHIISIADVREN 404 (1104)
T ss_pred cccccccccccceeeEEeecCCcccHHHHHHhhccCCCceEEEEEEecccccccccchhhhhhCCCceEeccchhhcChH
Confidence 7665444 9999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred eeeeeeecccccccc-cccCCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccc-----cCCcEEEEEEEEe
Q psy17515 388 VFNYVLVMARPLIMY-QTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTT-----RAANLLGVAAVDV 461 (1061)
Q Consensus 388 v~~y~d~larp~~~~-~~~~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~-----~~g~llGVvg~DV 461 (1061)
.+.|.++++||++.. ..+++++||.+|.+... .+++++++.||++...... ++..++||+|+||
T Consensus 405 ~~~y~~vlsRp~vl~~~~~~pv~wt~vy~~~~~----------~~~i~~~~~pv~~~~~~~~~~~~~~~~~~lgV~~~dv 474 (1104)
T KOG2353|consen 405 VLEYLDVLSRPLVLQGEEAHPVTWTQVYTDLLY----------LGLIVTVSLPVFNRTQRHVRVQNTSNQLLLGVVGTDV 474 (1104)
T ss_pred hhhhhhhhccceeecccccCCceeeehhhhhcc----------CcceEecccCcccchhhhhhhcccccceEEEEEeccc
Confidence 999999999999998 78899999999998753 5679999999998754332 3455999999999
Q ss_pred chHHHHhhccCCccCCceEEEEEeCCCcEEEcCCCCc--ccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHH
Q psy17515 462 PIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRP--LYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDM 539 (1061)
Q Consensus 462 ~L~~L~~ll~~~klG~~GY~flVd~nG~VL~HPdl~~--~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~m 539 (1061)
|+++|.++++.+++|.+||.|++|+||++|+||++++ .....++|+|.+.|+.++|..+ ...+.++|.+|
T Consensus 475 pv~ei~k~~~~~~lg~~gy~f~vd~nG~vl~HP~l~~~~~~~~~~~p~y~~~d~~ele~~e--------~~~~~~ir~~m 546 (1104)
T KOG2353|consen 475 PVKEIKKLTPPYKLGLNGYFFAVDNNGYVLLHPQLRPPPETTKKLKPNYLSFDLTELEHPE--------QDSLVEIRNAM 546 (1104)
T ss_pred CHHHHhhcCCccccCCCceEEEecCCccEEecCcccCCCcCCcccccccccchhHhhcccc--------hhhhHHHHHhh
Confidence 9999999999999999999999999999999999984 3333378999999999998652 24567999999
Q ss_pred HhcCCCceeEEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcchhhhhchHH----------------------
Q psy17515 540 IDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEE---------------------- 597 (1061)
Q Consensus 540 i~~~~G~~~~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~~~~~~~~~~---------------------- 597 (1061)
++.++|...+.++++++.++||....+.|+|+||++|+++|++++|.....+......
T Consensus 547 i~~~~~~~~~~~~~~~d~~~~v~~~~~~Y~~t~i~~t~f~L~iv~p~y~~~~~~~~~~~~~h~~~~~~~~~~~~w~lhp~ 626 (1104)
T KOG2353|consen 547 IDSDEGEKNFRVKFHYDDERRVSEYTRDYYWTPINDTPFTLGIVLPGYGFIKNNVKRDEGRHQKDNMFDLFIDNWKLHPD 626 (1104)
T ss_pred ccCCCCceeeeeEEEeeccccccccccCccccccCCCCceeeeecCceeeeccCcchhhceeecccccchhhhceeeccc
Confidence 9999988899999999999999999999999999999999999999322111000000
Q ss_pred --------------HHHHh-------------------------------------------------------------
Q psy17515 598 --------------EIKLS------------------------------------------------------------- 602 (1061)
Q Consensus 598 --------------~I~~~------------------------------------------------------------- 602 (1061)
++...
T Consensus 627 ~~~~~~~~~~~~e~~l~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~li~~a~~t~~~~~~~~~~~~~~~ 706 (1104)
T KOG2353|consen 627 WRYCEGHTFGTPEAKLQNYLKQSGSDPTLQWDKDQLNEGMLKDVPDAYFCNAYLAQLLIFDARVTNELVGNATFSSDEEK 706 (1104)
T ss_pred ccccccccccchHHHHHhhhhhccCCCcccchhHHHhhccccccccchHHHHHHHHHHHhhhhhhhccccceeccchhhh
Confidence 00000
Q ss_pred -------hhhccccchHHHHhhhccCCCCchhhhhhhhcccchhhHHhhhhccCCCCCcEEEeccCCCCC---CCCCceE
Q psy17515 603 -------AVNATRSGLIRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSVPHNSGP---RGEKPLV 672 (1061)
Q Consensus 603 -------~f~atrsgL~r~~~~~~~~~gdl~~f~~~~~~~i~~~wYkra~~~~~~~~~~~v~s~p~~~~~---~~~~~~v 672 (1061)
.|++|.+||+||+.+.+.+.-+..+|...+.+ ++.|||||++|+ .++|||++||+++. .+...+|
T Consensus 707 ~~~~~~~~fv~t~~gltr~~~~~~~~~h~~~~f~~d~~~--~~~~ykr~~~~~---~~~fv~~v~f~~~~~~~~n~~~~v 781 (1104)
T KOG2353|consen 707 NGYLVAHPFVATYSGLTRWQVFLKSAEHKEEHFNTDHFR--DPTWYKRASLQH---HGDFVYSVPFNDGLMDILNNVVGV 781 (1104)
T ss_pred cCeeeeeeeeecccccccccccccccccccccccccccC--CchHHHHhhhcc---cccEEEeeecCCChHHHhcCccce
Confidence 68899999999998888772223377777777 899999999998 66699999999987 6778899
Q ss_pred EEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCC-CCC-CCCCCCCCCcceeEecCCceEEec-cccccccc
Q psy17515 673 TASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTA-GPG-CKKTCASDDLDCYVLDNNGFIILS-EKYEQTGL 749 (1061)
Q Consensus 673 taS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~-~~~-c~~~C~~~~~~CyliD~~G~iv~S-~~~~~~G~ 749 (1061)
++|+||++..+|+.+.+||||+|+++++|.+.||++|++|.+ .++ |...|.+++++||++|+|||+++| ..-.++|+
T Consensus 782 ~~s~~v~~~~~g~na~~AVvg~q~~~~af~~~f~~~tr~c~~~~~~~c~c~c~~e~~~c~~~d~ngf~~~s~~~~~~~g~ 861 (1104)
T KOG2353|consen 782 EASTAVEALIRGKNAFAAVVGVQCDLEAFDEKFWTATRQCPNCLDGPCWCECPDEVLDCYIIDNNGFVIISGGKSHQTGR 861 (1104)
T ss_pred eehhhhHhhccCcccceeeEeeecchhHHHHHhhhhhhcCCcccCCccceecCCcCceeEEecCCceEEeccccccCCcc
Confidence 999999999999999999999999999999999999999976 445 888999999999999999999999 66689999
Q ss_pred ccccccHHHHHHhHhCCccceecceeccccccCCCCCCcchhhhhheeeeeeecccCCCCCCChHHHHHHHHHhccCCCC
Q psy17515 750 FFGQADGTIMDSLVQDGIYKRVPMYDNQGVCEDSKANDSDSARLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGW 829 (1061)
Q Consensus 750 ffg~i~~~~m~~l~~~~if~~~~~~DyQa~C~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 829 (1061)
|||+|||.+|.+||++++|+++++|||||+|++...+..+|+.++.=. |- +.. .-+.||.-..+++++
T Consensus 862 ffg~id~~lm~~lv~~~~~~r~T~yDyQavC~~~~~~~~ga~~~l~P~--~~-~~l--~~~~~~w~~~~~~~~------- 929 (1104)
T KOG2353|consen 862 FFGEIDPALMRSLVNNRCYTRVTSYDYQAVCEACKVDSDGAAHVLAPQ--CF-AIL--RALYTKWLPKMNALA------- 929 (1104)
T ss_pred cccccCHHHHHHHhhcceeeeeehhhhhhhcccccCCCcccccccCcc--hh-HHH--HHhhhhHHHHHHHHH-------
Confidence 999999999999999999999999999999999999999888632100 10 000 000011100133332
Q ss_pred cccccCCCCCCCCCchHHHHHHhhhheeeccCCcccccccCCCCCCCCCCCCCCCCCCCcchhhhhhhcccccccccCCC
Q psy17515 830 KWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDTDQSFPESDMDGDGDESMDLEAAMDETMSEVTKSQPI 909 (1061)
Q Consensus 830 ~w~~~~~~~~~~~~cd~~l~q~l~~da~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1061)
|. ++|...- |- ..|.....++ .+++
T Consensus 930 -~~---------------~~q~~~~-~~---~~~~p~~~~~-------------------~~v~---------------- 954 (1104)
T KOG2353|consen 930 -WE---------------LLQISQC-AY---SDWYPSGGEA-------------------ESVE---------------- 954 (1104)
T ss_pred -HH---------------HHHHHhh-hh---ccccccccCc-------------------eeee----------------
Confidence 32 3443321 00 0121111000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeeeeecCC-c-----ccc-CCC--CCCCeeeeecCCCc
Q psy17515 910 DPPPIADNETPPPPTITSTSPPTKTTKTSPPRLHARTCQKRADLFILQPG-R-----LNN-SGL--FNPPFSVQKIPHSN 980 (1061)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cd~~~~~y~~~~~-~-----~~~-~~~--c~r~f~~~~i~~sN 980 (1061)
.. +-++.|++ ...+|||+++++|+++++ + +.+ |+. |+|+|+||+||+||
T Consensus 955 -------~~---------~~~~~~h~------~~~~pc~~q~~~y~~~~~~~~~~~~~~~~c~~~~csr~f~~~~ip~tn 1012 (1104)
T KOG2353|consen 955 -------IN---------AIYAKKHK------THLYPCDMQYTAYVLQNDRNNPDNGNLDLCHASACSRKFVAQPIPNTN 1012 (1104)
T ss_pred -------cc---------cccccccc------CCCCcCccccceeeecccccccccccccccccccccceeEEeecCCCc
Confidence 00 01121211 246899999999999999 4 566 999 99999999999999
Q ss_pred eEEEEEec-CCCCCCC-cCccccccC--CC-CCC-cccccCCCCCCCCCccccCCcccccccccCCcccccccHHHHHHH
Q psy17515 981 LILLVVDT-LCPCGSK-ALSIEAQPV--PD-DGC-KLSETHHMYRRKPNKCVNYHPEEIEIKQCGSGSRFHLSFPLLLAI 1054 (1061)
Q Consensus 981 L~lvvv~~-~c~~~~~-~l~~~p~~~--~~-~~C-~~~~~~~~~Rrrp~~C~~~h~~e~~~~~cg~~~~~~~~~~~~~~~ 1054 (1061)
|+|+|+|. .|+|++. ++.++|+|. ++ .+| +. ..+++||||++|+++|++|+.+.+||+++.+.+|++++|++
T Consensus 1013 l~~~v~d~~~c~cs~~~~~~~~p~e~~~~~~~~C~~~--~~~~~rrrpd~c~~~~~~e~~~~~cg~~~s~~~s~~~~l~~ 1090 (1104)
T KOG2353|consen 1013 LSLVVVDRPSCPCSSHGPLTIEPQEPQYNESEKCETV--KSQRYRRRPDSCHDFHIEESIASDCGRASSLNPSLGLLLLI 1090 (1104)
T ss_pred eeEEEEecCCCcccccccccccCcCcccccccchhhh--hhhhhccCCcccccCCCCchhhhhcCCccccCCCccceeee
Confidence 99999999 8999997 799999998 55 899 55 35999999999999999999888999999999999998876
No 2
>PF08399 VWA_N: VWA N-terminal; InterPro: IPR013608 This domain is found at the N terminus of proteins containing von Willebrand factor type A (VWA, IPR002035 from INTERPRO) and Cache (IPR004010 from INTERPRO) domains. It has been found in vertebrates, Drosophila melanogaster (Fruit fly) and Caenorhabditis elegans but has not yet been identified in other eukaryotes. It is probably involved in the function of some voltage-dependent calcium channel subunits [].
Probab=99.96 E-value=9.7e-31 Score=252.28 Aligned_cols=116 Identities=41% Similarity=0.743 Sum_probs=106.4
Q ss_pred HHHHHHccCC---CCCCCceeeccccccCCCCCCC-CC---CCCccccccCCCCCccccccceeeeeeCCCCCCCCCHHH
Q psy17515 70 AEQAALSQKS---DSSSNVKYLDSRKLLHIPIHEK-PT---SANEMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQI 142 (1061)
Q Consensus 70 ae~~~~~~~~---~~~~~~~y~~~~~~~~~~~~~~-~~---~~~~~~l~~~~~F~~~~Vn~~~s~v~vpt~v~~~~~~~v 142 (1061)
||++++.|++ ....+++|||||+++....++. .+ ..+.++|++|+||++++||++.||||||++| |+++++|
T Consensus 1 AE~~~~~~~~~~~~~~~~~~yynak~~~~~~~~~~~~~~~~~~~~~~l~~d~~F~~i~Vn~~~S~VhiPt~V-y~~~~~v 79 (123)
T PF08399_consen 1 AEKAQEAHNWNEDVKNNNFQYYNAKYINDPTSDGNESEIQDCCRKMMLEPDSHFYNIPVNTSQSAVHIPTNV-YDRDPDV 79 (123)
T ss_pred CcchhhhcccccchhhcCCEEEecccccccCCCccccchhhccccccceeCcCcCCcccccccceEEccCCc-ccccHHH
Confidence 6888888988 4567799999999999877654 22 2378999999999999999999999999999 9999999
Q ss_pred HhhhccccchHHHHhhhccCCCCccccccccCCcccccCCCCCC
Q psy17515 143 LNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKW 186 (1061)
Q Consensus 143 ~~~i~ws~~Ld~~F~~n~~~dp~l~wQyfgS~~G~~r~yPa~~w 186 (1061)
+++|+||++||++|++|+++||+|+||||||++|++|+|||++|
T Consensus 80 l~~i~ws~~Ld~~f~~N~~~dp~l~WQYFgS~~G~~r~yPa~~W 123 (123)
T PF08399_consen 80 LNAINWSEALDDVFRENYESDPTLKWQYFGSSTGFFRQYPASKW 123 (123)
T ss_pred HhhccccHHHHHHHHHHhhcCCCceEEEEEcccCceeeccCCCC
Confidence 99999999999999999999999999999999999999999998
No 3
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.96 E-value=1.3e-28 Score=259.15 Aligned_cols=182 Identities=48% Similarity=0.865 Sum_probs=162.9
Q ss_pred cCccceeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHH
Q psy17515 200 RSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKR 279 (1061)
Q Consensus 200 R~R~Wyi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~ 279 (1061)
|.||||++++..|++|+||||+||||.+.+++.+|+++..+++.|.++|+|+|+.|++.+..++||+++.+.+++..|++
T Consensus 1 ~~~~~~~~~~~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~ 80 (190)
T cd01463 1 RNRSWYIQAATSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKK 80 (190)
T ss_pred CCCcceeecccCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHHHHHhcc---cCCCCCCCceEEEEEeCCCCCcHHHHHHhhCCC---CCCeeEEEE
Q psy17515 280 TLKAALANVKGDNVANFTGALATAFEILHKYN---RTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWP---HMPVRLFSY 353 (1061)
Q Consensus 280 ~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~---~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~~---~~~VrIfTi 353 (1061)
.+..+|+.+.+.|+|++..||..|++.+.... .....+...+.|||||||.++...+++.++++. ..+|+||||
T Consensus 81 ~~~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~v~i~ti 160 (190)
T cd01463 81 VLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWDKNSEIPVRVFTY 160 (190)
T ss_pred HHHHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhcccccCCCcEEEEEE
Confidence 99999999999999999999999999998732 111223467799999999999888877776642 347999999
Q ss_pred EecCCc-hhhhhhhhhccCCccceeeecc
Q psy17515 354 LIGKSS-NYAEMKQMACSNKGYFEFIKNT 381 (1061)
Q Consensus 354 gIG~~~-d~~~L~~IA~~ngG~y~~I~~~ 381 (1061)
|||.+. +..+|+.||..++|+|.++.++
T Consensus 161 giG~~~~d~~~L~~lA~~~~G~~~~i~~~ 189 (190)
T cd01463 161 LIGREVTDRREIQWMACENKGYYSHIQSL 189 (190)
T ss_pred ecCCccccchHHHHHHhhcCCeEEEcccC
Confidence 999994 9999999999999999998763
No 4
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.88 E-value=4.6e-22 Score=202.14 Aligned_cols=152 Identities=28% Similarity=0.474 Sum_probs=133.8
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCCC-C
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKG-D 291 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~-~ 291 (1061)
++||||||+||||.|.+ +.+|++++.++++|+++|+|+|+.|++.+..+.| .+++++..+++.+.++|..+.+ .
T Consensus 1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~----~~~~~~~~~~~~a~~~I~~~~~~~ 75 (155)
T PF13768_consen 1 ADVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFP----GLVPATEENRQEALQWIKSLEANS 75 (155)
T ss_pred CeEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcch----hHHHHhHHHHHHHHHHHHHhcccC
Confidence 48999999999999999 9999999999999999999999999998776544 5788899999999999999998 9
Q ss_pred CCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC-cHHHHHHhhCCCCCCeeEEEEEecCCchhhhhhhhhcc
Q psy17515 292 NVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS-AFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACS 370 (1061)
Q Consensus 292 G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~-~~~~i~~~~n~~~~~VrIfTigIG~~~d~~~L~~IA~~ 370 (1061)
|+|++..||+.|++.+ ..+.+.+.|||+|||.+. ...++++..++...+++||||++|.+.+..+|+.||+.
T Consensus 76 G~t~l~~aL~~a~~~~-------~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~~~~~i~~~~~g~~~~~~~L~~LA~~ 148 (155)
T PF13768_consen 76 GGTDLLAALRAALALL-------QRPGCVRAIILLTDGQPVSGEEEILDLVRRARGHIRIFTFGIGSDADADFLRELARA 148 (155)
T ss_pred CCccHHHHHHHHHHhc-------ccCCCccEEEEEEeccCCCCHHHHHHHHHhcCCCceEEEEEECChhHHHHHHHHHHc
Confidence 9999999999999876 123477899999999974 34456666654457899999999999999999999999
Q ss_pred CCccce
Q psy17515 371 NKGYFE 376 (1061)
Q Consensus 371 ngG~y~ 376 (1061)
++|+|.
T Consensus 149 ~~G~~~ 154 (155)
T PF13768_consen 149 TGGSFH 154 (155)
T ss_pred CCCEEE
Confidence 999985
No 5
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.85 E-value=9e-21 Score=194.89 Aligned_cols=167 Identities=25% Similarity=0.372 Sum_probs=142.4
Q ss_pred CceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCCCC
Q psy17515 212 PKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGD 291 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~~ 291 (1061)
|++++||||+||||.|.+++.+|+++..++..|+++|+|+|+.|++++..+.++ ....+..++..+.+.+..+.++
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~ 77 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPS----SVSATAENVAAAIEYVNRLQAL 77 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCc----ceeCCHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999999999999999999999997765432 2234567788889999999999
Q ss_pred CCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCC-CCCCeeEEEEEecCCchhhhhhhhhcc
Q psy17515 292 NVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNW-PHMPVRLFSYLIGKSSNYAEMKQMACS 370 (1061)
Q Consensus 292 G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~-~~~~VrIfTigIG~~~d~~~L~~IA~~ 370 (1061)
|+|++..||..|++.+... ..+.+.||++|||..+...++.+..+. ...+++||++++|.+.+...|+.||+.
T Consensus 78 g~T~l~~al~~a~~~l~~~------~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~~~~~l~~ia~~ 151 (171)
T cd01461 78 GGTNMNDALEAALELLNSS------PGSVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSDVNTYLLERLARE 151 (171)
T ss_pred CCcCHHHHHHHHHHhhccC------CCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCccCHHHHHHHHHc
Confidence 9999999999999988651 235679999999998877665554443 234899999999998888999999999
Q ss_pred CCccceeeecccccccee
Q psy17515 371 NKGYFEFIKNTDRLRMKV 388 (1061)
Q Consensus 371 ngG~y~~I~~~~dv~e~v 388 (1061)
++|.|.++.+.+++.+++
T Consensus 152 ~gG~~~~~~~~~~~~~~~ 169 (171)
T cd01461 152 GRGIARRIYETDDIESQL 169 (171)
T ss_pred CCCeEEEecChHHHHHHh
Confidence 999999999998887765
No 6
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.85 E-value=1.9e-20 Score=190.65 Aligned_cols=154 Identities=25% Similarity=0.406 Sum_probs=131.5
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCCCCC
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDN 292 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~~G 292 (1061)
+|++||||+||||.+.|++.+|+++..+++.|.++|+|+|+.|+++++.+.| +.+.+..+++.+.++|..+.++|
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~g 75 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSP-----LRRMTAKGKRSAKRVVDGLQAGG 75 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCC-----CcccCHHHHHHHHHHHHhccCCC
Confidence 4899999999999999999999999999999999999999999998876543 44556678889999999999999
Q ss_pred CcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCCCCCCeeEEEEEecCCchhhhhhhhhccCC
Q psy17515 293 VANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNK 372 (1061)
Q Consensus 293 ~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~~~~~VrIfTigIG~~~d~~~L~~IA~~ng 372 (1061)
+|++..||..|++.+..... ....+.|||+|||.++.+...+. ....+++||+||||.+.+...|+++|+.++
T Consensus 76 ~T~~~~al~~a~~~~~~~~~----~~~~~~iillTDG~~~~~~~~~~---~~~~~v~v~~igig~~~~~~~l~~iA~~t~ 148 (155)
T cd01466 76 GTNVVGGLKKALKVLGDRRQ----KNPVASIMLLSDGQDNHGAVVLR---ADNAPIPIHTFGLGASHDPALLAFIAEITG 148 (155)
T ss_pred CccHHHHHHHHHHHHhhccc----CCCceEEEEEcCCCCCcchhhhc---ccCCCceEEEEecCCCCCHHHHHHHHhccC
Confidence 99999999999999875322 23457999999999987532222 245689999999999999999999999999
Q ss_pred ccceee
Q psy17515 373 GYFEFI 378 (1061)
Q Consensus 373 G~y~~I 378 (1061)
|.|+++
T Consensus 149 G~~~~~ 154 (155)
T cd01466 149 GTFSYV 154 (155)
T ss_pred ceEEEe
Confidence 998876
No 7
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.83 E-value=2.1e-20 Score=229.23 Aligned_cols=184 Identities=23% Similarity=0.337 Sum_probs=157.0
Q ss_pred cCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcC
Q psy17515 209 ATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANV 288 (1061)
Q Consensus 209 a~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l 288 (1061)
...|++++||||+||||.|.+++.||.++..+|..|.++|+|+|+.|++++..+.+ ..+.++..|++.+..+|+.+
T Consensus 268 ~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~~~----~~~~~~~~~~~~a~~~i~~l 343 (596)
T TIGR03788 268 QVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLLFP----VPVPATAHNLARARQFVAGL 343 (596)
T ss_pred cCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEecc----ccccCCHHHHHHHHHHHhhC
Confidence 35789999999999999999999999999999999999999999999999886543 46678889999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCCCCCCeeEEEEEecCCchhhhhhhhh
Q psy17515 289 KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMA 368 (1061)
Q Consensus 289 ~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~~~~~VrIfTigIG~~~d~~~L~~IA 368 (1061)
.++|+|++..||+.|++..... .....+.|||||||...+..++++.......+++|||+|||.+.+..+|+.||
T Consensus 344 ~a~GgT~l~~aL~~a~~~~~~~-----~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 344 QADGGTEMAGALSAALRDDGPE-----SSGALRQVVFLTDGAVGNEDALFQLIRTKLGDSRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred CCCCCccHHHHHHHHHHhhccc-----CCCceeEEEEEeCCCCCCHHHHHHHHHHhcCCceEEEEEeCCCcCHHHHHHHH
Confidence 9999999999999999863221 22356789999999987766665544433456899999999999999999999
Q ss_pred ccCCccceeeeccccccceeeeeeeeccccccc
Q psy17515 369 CSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIM 401 (1061)
Q Consensus 369 ~~ngG~y~~I~~~~dv~e~v~~y~d~larp~~~ 401 (1061)
..++|.|.++.+.+++.+.+.+++..+..|...
T Consensus 419 ~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~ 451 (596)
T TIGR03788 419 QFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALT 451 (596)
T ss_pred HcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEE
Confidence 999999999999888888888887877777654
No 8
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.79 E-value=8.2e-19 Score=187.06 Aligned_cols=164 Identities=20% Similarity=0.285 Sum_probs=128.0
Q ss_pred cCCCceEEEEEccCCCCC------cchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceee------eec-ccc-ccccccC
Q psy17515 209 ATSPKDIVILLDASSTLS------TKHRNLARATINVILDTLGSNDFVNIFTFSDVTVE------LVP-CYR-EMLVQAT 274 (1061)
Q Consensus 209 a~~pkdVVILlD~SGSM~------g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~------~~~-c~~-~~lv~at 274 (1061)
...|.+++||||+||||. +.|++.+|.++..+++.|.++|+|+|+.|++.... ++| |.. ..+....
T Consensus 17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~ 96 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFP 96 (206)
T ss_pred cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCCC
Confidence 357999999999999998 57999999999999999999999999999996431 111 111 0011111
Q ss_pred HHhHHHHHHHHhcCC-CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH---HHHHHhhCC---CCCC
Q psy17515 275 DENKRTLKAALANVK-GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF---KEVFKHYNW---PHMP 347 (1061)
Q Consensus 275 ~~n~~~lk~~I~~l~-~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~---~~i~~~~n~---~~~~ 347 (1061)
..+++.+.+.|+.+. +.|+|++..||+.|.+.+. . ...+.|||||||.++.. .+.+.++.. +..+
T Consensus 97 ~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~----~----~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~ 168 (206)
T cd01456 97 SAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD----P----GRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPP 168 (206)
T ss_pred cccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC----C----CCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCC
Confidence 258899999999998 9999999999999999885 1 12369999999999864 333333331 2368
Q ss_pred eeEEEEEecCCchhhhhhhhhccCCccc-eeeec
Q psy17515 348 VRLFSYLIGKSSNYAEMKQMACSNKGYF-EFIKN 380 (1061)
Q Consensus 348 VrIfTigIG~~~d~~~L~~IA~~ngG~y-~~I~~ 380 (1061)
|+||+|+||.+.+...|++||..++|.| +...+
T Consensus 169 i~i~~igiG~~~~~~~l~~iA~~tgG~~~~~~~~ 202 (206)
T cd01456 169 IKVNVIDFGGDADRAELEAIAEATGGTYAYNQSD 202 (206)
T ss_pred ceEEEEEecCcccHHHHHHHHHhcCCeEeccccc
Confidence 9999999999999999999999999998 55443
No 9
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.79 E-value=1.6e-18 Score=178.25 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=132.7
Q ss_pred eEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCCCCCC
Q psy17515 214 DIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNV 293 (1061)
Q Consensus 214 dVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~~G~ 293 (1061)
+++||||+||||.+.+++.+|+++..++..|.++|+|+|+.|+++...+++.. ...+.+.+.+.|..+.+.|+
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~g~ 74 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPAT-------PVRDKAAILAAIDRLTAGGS 74 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCc-------ccchHHHHHHHHHcCCCCCC
Confidence 68999999999999999999999999999999999999999999877654421 11356888899999999999
Q ss_pred cchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH----HHHHHhhCC-CCCCeeEEEEEecCCchhhhhhhhh
Q psy17515 294 ANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF----KEVFKHYNW-PHMPVRLFSYLIGKSSNYAEMKQMA 368 (1061)
Q Consensus 294 Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~----~~i~~~~n~-~~~~VrIfTigIG~~~d~~~L~~IA 368 (1061)
|++..||..|++.+.+... +.+.+.|||+|||.++.+ +.+.+..+. ...+++||+++||.+.+...|++||
T Consensus 75 T~~~~al~~a~~~~~~~~~----~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia 150 (170)
T cd01465 75 TAGGAGIQLGYQEAQKHFV----PGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIA 150 (170)
T ss_pred CCHHHHHHHHHHHHHhhcC----CCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHH
Confidence 9999999999999876432 124468999999998743 222222221 3568999999999889999999999
Q ss_pred ccCCccceeeeccccccc
Q psy17515 369 CSNKGYFEFIKNTDRLRM 386 (1061)
Q Consensus 369 ~~ngG~y~~I~~~~dv~e 386 (1061)
..++|.|+++.+.+++.+
T Consensus 151 ~~~~g~~~~~~~~~~~~~ 168 (170)
T cd01465 151 DAGNGNTAYIDNLAEARK 168 (170)
T ss_pred hcCCceEEEeCCHHHHHh
Confidence 999999999998877653
No 10
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.78 E-value=1.8e-18 Score=183.17 Aligned_cols=167 Identities=17% Similarity=0.258 Sum_probs=128.7
Q ss_pred eEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC-
Q psy17515 214 DIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK- 289 (1061)
Q Consensus 214 dVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~- 289 (1061)
||+||||+||||.+.+++.+|.++..+++.|. .+|+|+||+|++++..++| +......++..+..+|..+.
T Consensus 2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 76 (198)
T cd01470 2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVS-----IRDFNSNDADDVIKRLEDFNY 76 (198)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEe-----cccCCCCCHHHHHHHHHhCCc
Confidence 79999999999999999999999999999986 4899999999999887654 33344556788899998885
Q ss_pred ----CCCCcchHHHHHHHHHHHHhcccCC--CCCCCceEEEEEeCCCCCcH---HHH---HHhh-C-------CCCCCee
Q psy17515 290 ----GDNVANFTGALATAFEILHKYNRTN--QGCQCNQAIMLVSSGPPSAF---KEV---FKHY-N-------WPHMPVR 349 (1061)
Q Consensus 290 ----~~G~Tnl~~AL~~A~~~L~~~~~~~--~~~~~~~~IvLlTDG~~~~~---~~i---~~~~-n-------~~~~~Vr 349 (1061)
..|+|++..||..|++.+....... ......++|||||||.++.+ ... ++.. . ....+|+
T Consensus 77 ~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (198)
T cd01470 77 DDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLD 156 (198)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhccee
Confidence 3578999999999998875322111 11234578999999998742 222 2211 1 1345799
Q ss_pred EEEEEecCCchhhhhhhhhccCCc--cceeeecccccc
Q psy17515 350 LFSYLIGKSSNYAEMKQMACSNKG--YFEFIKNTDRLR 385 (1061)
Q Consensus 350 IfTigIG~~~d~~~L~~IA~~ngG--~y~~I~~~~dv~ 385 (1061)
||+||+|.+.+..+|+.||..++| +++.+.+.+++.
T Consensus 157 i~~iGvG~~~~~~~L~~iA~~~~g~~~~f~~~~~~~l~ 194 (198)
T cd01470 157 VYVFGVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQ 194 (198)
T ss_pred EEEEecCcccCHHHHHHHhcCCCCCceEEEeCCHHHHH
Confidence 999999999999999999999998 567777665554
No 11
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.74 E-value=2.6e-17 Score=172.72 Aligned_cols=155 Identities=18% Similarity=0.272 Sum_probs=124.9
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc---------CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHH
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTL---------GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTL 281 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL---------~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~l 281 (1061)
+|.||+||||+||||.+.+++.+|++++.+++.| ..+++|+||.|++++....+ +... ..+++.+
T Consensus 1 c~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~-----l~~~-~~~~~~l 74 (186)
T cd01480 1 GPVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAG-----FLRD-IRNYTSL 74 (186)
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEe-----cccc-cCCHHHH
Confidence 5899999999999999999999999999999998 34689999999999876443 1111 3578999
Q ss_pred HHHHhcCC-CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH-----HHHHHhhCCCCCCeeEEEEEe
Q psy17515 282 KAALANVK-GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF-----KEVFKHYNWPHMPVRLFSYLI 355 (1061)
Q Consensus 282 k~~I~~l~-~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~-----~~i~~~~n~~~~~VrIfTigI 355 (1061)
.++|+++. .+|+|+++.||..|.+.+... ..+...++|||+|||.++.. .+..+.++ ..+|.||++|+
T Consensus 75 ~~~i~~l~~~gg~T~~~~AL~~a~~~l~~~----~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~--~~gi~i~~vgi 148 (186)
T cd01480 75 KEAVDNLEYIGGGTFTDCALKYATEQLLEG----SHQKENKFLLVITDGHSDGSPDGGIEKAVNEAD--HLGIKIFFVAV 148 (186)
T ss_pred HHHHHhCccCCCCccHHHHHHHHHHHHhcc----CCCCCceEEEEEeCCCcCCCcchhHHHHHHHHH--HCCCEEEEEec
Confidence 99999996 588999999999999998762 12347889999999987422 22333333 56899999999
Q ss_pred cCCchhhhhhhhhccCCccceee
Q psy17515 356 GKSSNYAEMKQMACSNKGYFEFI 378 (1061)
Q Consensus 356 G~~~d~~~L~~IA~~ngG~y~~I 378 (1061)
|. .+...|+.||+..++.|+..
T Consensus 149 g~-~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 149 GS-QNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred Cc-cchHHHHHHHcCCcchhhhc
Confidence 99 88889999999999975443
No 12
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.74 E-value=2.9e-17 Score=168.57 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=124.5
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
+||+||||+||||.+.+++.+|++++.++..|. .+++++||.|++++..+.+.. ...+.+.+.+.|+.+.
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~-------~~~~~~~~~~~l~~l~ 73 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLN-------TYRSKDDVLEAVKNLR 73 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecC-------CCCCHHHHHHHHHhCc
Confidence 589999999999999999999999999999986 567999999999988755421 1356788888999997
Q ss_pred C-CCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH-HHHhhCCCCCCeeEEEEEecCCchhhhhhhh
Q psy17515 290 G-DNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE-VFKHYNWPHMPVRLFSYLIGKSSNYAEMKQM 367 (1061)
Q Consensus 290 ~-~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~-i~~~~n~~~~~VrIfTigIG~~~d~~~L~~I 367 (1061)
. +|+|+++.||..|.+.+.... .+....+.++|||+|||.++.... ....+. ..+|+||++|+|.. +...|++|
T Consensus 74 ~~~g~T~~~~al~~a~~~l~~~~-~~~~~~~~~~iiliTDG~~~~~~~~~~~~l~--~~gv~i~~ig~g~~-~~~~L~~i 149 (164)
T cd01472 74 YIGGGTNTGKALKYVRENLFTEA-SGSREGVPKVLVVITDGKSQDDVEEPAVELK--QAGIEVFAVGVKNA-DEEELKQI 149 (164)
T ss_pred CCCCCchHHHHHHHHHHHhCCcc-cCCCCCCCEEEEEEcCCCCCchHHHHHHHHH--HCCCEEEEEECCcC-CHHHHHHH
Confidence 6 678999999999999987643 112345788999999998875432 222222 46799999999986 88999999
Q ss_pred hccCCccceee
Q psy17515 368 ACSNKGYFEFI 378 (1061)
Q Consensus 368 A~~ngG~y~~I 378 (1061)
|+.++|.|...
T Consensus 150 a~~~~~~~~~~ 160 (164)
T cd01472 150 ASDPKELYVFN 160 (164)
T ss_pred HCCCchheEEe
Confidence 99999876554
No 13
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.71 E-value=9.9e-17 Score=197.77 Aligned_cols=170 Identities=16% Similarity=0.275 Sum_probs=134.1
Q ss_pred ccceeeccCCCceEEEEEccCCCCCc-chHHHHHHHHHHHH-HHcCCCCEEEEEEEcCceeeeeccccccccccCHH-hH
Q psy17515 202 SAWFVEAATSPKDIVILLDASSTLST-KHRNLARATINVIL-DTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDE-NK 278 (1061)
Q Consensus 202 R~Wyi~aa~~pkdVVILlD~SGSM~g-~~l~~aK~a~~~iL-dtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~-n~ 278 (1061)
.|+|......+++|+||||+||||.+ .++..+|+|++.++ +.+.++|+++||.|++.+..+. .+++.+.. .+
T Consensus 294 ~P~Fs~lq~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~-----pLt~Its~~dr 368 (863)
T TIGR00868 294 PPTFSLLKIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKN-----ELIQITSSAER 368 (863)
T ss_pred CCceeecccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEee-----ccccCCcHHHH
Confidence 36666666677889999999999987 68999999998764 6688999999999999987543 36665554 45
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCCCCCCeeEEEEEecCC
Q psy17515 279 RTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKS 358 (1061)
Q Consensus 279 ~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~~~~~VrIfTigIG~~ 358 (1061)
+.+...+. +.++|+|++..||..|+++|.+.... ...+.|||||||.++...+.+.... +.+|+|||||+|.+
T Consensus 369 ~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~----~~~~~IILLTDGedn~~~~~l~~lk--~~gVtI~TIg~G~d 441 (863)
T TIGR00868 369 DALTANLP-TAASGGTSICSGLKAAFQVIKKSYQS----TDGSEIVLLTDGEDNTISSCFEEVK--QSGAIIHTIALGPS 441 (863)
T ss_pred HHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccc----cCCCEEEEEeCCCCCCHHHHHHHHH--HcCCEEEEEEeCCC
Confidence 55555554 56899999999999999999875421 2456999999999987766665443 46899999999998
Q ss_pred chhhhhhhhhccCCccceeeeccccc
Q psy17515 359 SNYAEMKQMACSNKGYFEFIKNTDRL 384 (1061)
Q Consensus 359 ~d~~~L~~IA~~ngG~y~~I~~~~dv 384 (1061)
.+. .|+.||..+||.|+++.+.+++
T Consensus 442 ad~-~L~~IA~~TGG~~f~asd~~dl 466 (863)
T TIGR00868 442 AAK-ELEELSDMTGGLRFYASDQADN 466 (863)
T ss_pred hHH-HHHHHHHhcCCEEEEeCCHHHH
Confidence 765 5899999999999888765544
No 14
>PRK13685 hypothetical protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=182.03 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=131.4
Q ss_pred CCceEEEEEccCCCCCc-----chHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH
Q psy17515 211 SPKDIVILLDASSTLST-----KHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL 285 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g-----~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I 285 (1061)
.+.+++|+||+||||.+ +|++.||+++..+++.+.++|++++|.|++++..+.| ...+.+.+..+|
T Consensus 87 ~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p---------~t~d~~~l~~~l 157 (326)
T PRK13685 87 NRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVS---------PTTNREATKNAI 157 (326)
T ss_pred CCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCC---------CCCCHHHHHHHH
Confidence 46789999999999986 5899999999999999999999999999999775432 235788999999
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHhccc--CCCCCCCceEEEEEeCCCCCcHH---------HHHHhhCCCCCCeeEEEEE
Q psy17515 286 ANVKGDNVANFTGALATAFEILHKYNR--TNQGCQCNQAIMLVSSGPPSAFK---------EVFKHYNWPHMPVRLFSYL 354 (1061)
Q Consensus 286 ~~l~~~G~Tnl~~AL~~A~~~L~~~~~--~~~~~~~~~~IvLlTDG~~~~~~---------~i~~~~n~~~~~VrIfTig 354 (1061)
+.+.++|+|+++.|+..|++.+.+... .+......+.|||+|||..+.+. +..+.. .+.+|+|||+|
T Consensus 158 ~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a--~~~gi~i~~Ig 235 (326)
T PRK13685 158 DKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTA--KDQGVPISTIS 235 (326)
T ss_pred HhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHH--HHcCCeEEEEE
Confidence 999999999999999999999875311 00011234589999999987531 222222 35689999999
Q ss_pred ecCC--------------chhhhhhhhhccCCccceeeeccccccc
Q psy17515 355 IGKS--------------SNYAEMKQMACSNKGYFEFIKNTDRLRM 386 (1061)
Q Consensus 355 IG~~--------------~d~~~L~~IA~~ngG~y~~I~~~~dv~e 386 (1061)
||.+ .+...|+.+|..++|.|+++.+.+++..
T Consensus 236 ~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~~~L~~ 281 (326)
T PRK13685 236 FGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASLEELRA 281 (326)
T ss_pred ECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCHHHHHH
Confidence 9974 3678899999999999999888666543
No 15
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.68 E-value=3.3e-16 Score=162.84 Aligned_cols=147 Identities=15% Similarity=0.226 Sum_probs=111.6
Q ss_pred CceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCC------CCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH
Q psy17515 212 PKDIVILLDASSTLSTKHRNLARATINVILDTLGS------NDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL 285 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~------~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I 285 (1061)
..+|+||||+||||.|.++..+|+++..+++.|.+ +++|+||.|+++++.+.|+.. . .+ ..+
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~-----~--~~-----~~~ 70 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTP-----L--ES-----FQP 70 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCcc-----H--Hh-----cCC
Confidence 46799999999999999999999999999999864 569999999999887655311 1 01 124
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHhcccCC---CCCCCceEEEEEeCCCCCcHHH-HHHhhCC-CCCCeeEEEEEecCCch
Q psy17515 286 ANVKGDNVANFTGALATAFEILHKYNRTN---QGCQCNQAIMLVSSGPPSAFKE-VFKHYNW-PHMPVRLFSYLIGKSSN 360 (1061)
Q Consensus 286 ~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~---~~~~~~~~IvLlTDG~~~~~~~-i~~~~n~-~~~~VrIfTigIG~~~d 360 (1061)
..+.++|+|++..||..|++.|....... ......+.|||||||.+++... ..+.+.. ...+++|++||||.+.+
T Consensus 71 ~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~~ 150 (176)
T cd01464 71 PRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKAD 150 (176)
T ss_pred CcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccccC
Confidence 56678899999999999999997643211 1122456899999999986433 2222221 23479999999999999
Q ss_pred hhhhhhhhcc
Q psy17515 361 YAEMKQMACS 370 (1061)
Q Consensus 361 ~~~L~~IA~~ 370 (1061)
.++|+.||..
T Consensus 151 ~~~L~~ia~~ 160 (176)
T cd01464 151 LDTLKQITEG 160 (176)
T ss_pred HHHHHHHHCC
Confidence 9999999864
No 16
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.66 E-value=6.4e-16 Score=161.92 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=114.6
Q ss_pred ceEEEEEccCCCCCcch-HHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHH---HHHHH
Q psy17515 213 KDIVILLDASSTLSTKH-RNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRT---LKAAL 285 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~-l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~---lk~~I 285 (1061)
.||+||||+||||.+.. +..+|.++..+++.+. ++.+|+||+|++.+..+++. ......+++. +.+.+
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l-----~~~~~~~~~~~~~~i~~l 75 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRL-----SSPNSTNKDLALNAIRAL 75 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEEC-----CCccccchHHHHHHHHHH
Confidence 38999999999999987 9999999999999885 56799999999998876542 2222234444 33333
Q ss_pred hcC-CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH---HHHhhCCCCCCeeEEEEEecCCchh
Q psy17515 286 ANV-KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE---VFKHYNWPHMPVRLFSYLIGKSSNY 361 (1061)
Q Consensus 286 ~~l-~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~---i~~~~n~~~~~VrIfTigIG~~~d~ 361 (1061)
..+ .++|+|++..||..|.+.+...+. ..+...+.|||+|||.++.... ..+++. ..+|.|++||||.+.+.
T Consensus 76 ~~~~~~~G~T~l~~aL~~a~~~l~~~~~--~r~~~~~~villTDG~~~~~~~~~~~a~~l~--~~gv~v~~igiG~~~d~ 151 (186)
T cd01471 76 LSLYYPNGSTNTTSALLVVEKHLFDTRG--NRENAPQLVIIMTDGIPDSKFRTLKEARKLR--ERGVIIAVLGVGQGVNH 151 (186)
T ss_pred HhCcCCCCCccHHHHHHHHHHHhhccCC--CcccCceEEEEEccCCCCCCcchhHHHHHHH--HCCCEEEEEEeehhhCH
Confidence 333 478899999999999999986421 1234678999999999986543 233332 45799999999999999
Q ss_pred hhhhhhhccC
Q psy17515 362 AEMKQMACSN 371 (1061)
Q Consensus 362 ~~L~~IA~~n 371 (1061)
.+|+.||...
T Consensus 152 ~~l~~ia~~~ 161 (186)
T cd01471 152 EENRSLVGCD 161 (186)
T ss_pred HHHHHhcCCC
Confidence 9999998765
No 17
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.65 E-value=1.6e-15 Score=158.01 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=120.2
Q ss_pred EEEEEccCCCCCcc-hHHHHHHHHHHHHH-HcCCCCEEEEEEEcCc-eeeeeccccccccccCHHhHHHHHHHHhcCCCC
Q psy17515 215 IVILLDASSTLSTK-HRNLARATINVILD-TLGSNDFVNIFTFSDV-TVELVPCYREMLVQATDENKRTLKAALANVKGD 291 (1061)
Q Consensus 215 VVILlD~SGSM~g~-~l~~aK~a~~~iLd-tL~~~D~v~Vv~Fs~~-~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~~ 291 (1061)
|+||||+||||.+. +++.+|.++..++. .+.++|+|+|+.|+++ +...+| .+ .+++.+...|+.+.++
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~--------~t-~~~~~~~~~l~~l~~~ 73 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLP--------PT-RSVELAKRRLARLPTG 73 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeC--------CC-CCHHHHHHHHHhCCCC
Confidence 78999999999986 99999999999986 5678999999999875 443322 22 4567788999999999
Q ss_pred CCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH--------HHHHhhCCCCCCeeEEEEEecCC-chhh
Q psy17515 292 NVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK--------EVFKHYNWPHMPVRLFSYLIGKS-SNYA 362 (1061)
Q Consensus 292 G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~--------~i~~~~n~~~~~VrIfTigIG~~-~d~~ 362 (1061)
|+|++..||..|++.+..... .....+.|||||||.++.+. +..+++ ...+|.|+++++|.+ .+..
T Consensus 74 G~T~l~~aL~~a~~~l~~~~~---~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l--~~~gi~v~~I~~~~~~~~~~ 148 (178)
T cd01451 74 GGTPLAAGLLAAYELAAEQAR---DPGQRPLIVVITDGRANVGPDPTADRALAAARKL--RARGISALVIDTEGRPVRRG 148 (178)
T ss_pred CCCcHHHHHHHHHHHHHHHhc---CCCCceEEEEECCCCCCCCCCchhHHHHHHHHHH--HhcCCcEEEEeCCCCccCcc
Confidence 999999999999999832111 11235799999999988421 112222 355799999999876 6788
Q ss_pred hhhhhhccCCccceeeeccc
Q psy17515 363 EMKQMACSNKGYFEFIKNTD 382 (1061)
Q Consensus 363 ~L~~IA~~ngG~y~~I~~~~ 382 (1061)
.|+.||..++|.|+++.+..
T Consensus 149 ~l~~iA~~tgG~~~~~~d~~ 168 (178)
T cd01451 149 LAKDLARALGGQYVRLPDLS 168 (178)
T ss_pred HHHHHHHHcCCeEEEcCcCC
Confidence 99999999999999987654
No 18
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.63 E-value=2.8e-15 Score=157.20 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=110.7
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc-CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTL-GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL-~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
.+.||+||||+||||.+.. ..+++.++.+++.+ .++++|+||+|++++..++| +.... .......+.|..+.
T Consensus 3 ~~~Dvv~llD~SgSm~~~~-~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~-----l~~~~-~~~~~~l~~l~~~~ 75 (185)
T cd01474 3 GHFDLYFVLDKSGSVAANW-IEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILP-----LTDDS-SAIIKGLEVLKKVT 75 (185)
T ss_pred CceeEEEEEeCcCchhhhH-HHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEe-----ccccH-HHHHHHHHHHhccC
Confidence 4789999999999999743 33456677777665 46899999999999887654 21111 12222233466777
Q ss_pred CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC--cHH---HHHHhhCCCCCCeeEEEEEecCCchhhhh
Q psy17515 290 GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS--AFK---EVFKHYNWPHMPVRLFSYLIGKSSNYAEM 364 (1061)
Q Consensus 290 ~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~--~~~---~i~~~~n~~~~~VrIfTigIG~~~d~~~L 364 (1061)
++|+|+++.||+.|.+.+......++ ...++|||+|||.++ ... ...+... ..+|.||++|+ .+++..+|
T Consensus 76 ~~g~T~~~~aL~~a~~~l~~~~~~~r--~~~~~villTDG~~~~~~~~~~~~~a~~l~--~~gv~i~~vgv-~~~~~~~L 150 (185)
T cd01474 76 PSGQTYIHEGLENANEQIFNRNGGGR--ETVSVIIALTDGQLLLNGHKYPEHEAKLSR--KLGAIVYCVGV-TDFLKSQL 150 (185)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccCCC--CCCeEEEEEcCCCcCCCCCcchHHHHHHHH--HcCCEEEEEee-chhhHHHH
Confidence 88999999999999998864322211 133799999999984 221 2222222 46799999999 45788899
Q ss_pred hhhhccCCccceeeecccc
Q psy17515 365 KQMACSNKGYFEFIKNTDR 383 (1061)
Q Consensus 365 ~~IA~~ngG~y~~I~~~~d 383 (1061)
+.||...++.|....+..+
T Consensus 151 ~~iA~~~~~~f~~~~~~~~ 169 (185)
T cd01474 151 INIADSKEYVFPVTSGFQA 169 (185)
T ss_pred HHHhCCCCeeEecCccHHH
Confidence 9999887655534444333
No 19
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.62 E-value=8.5e-15 Score=154.44 Aligned_cols=151 Identities=13% Similarity=0.168 Sum_probs=112.1
Q ss_pred cCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCC---------CCEEEEEEEcCceeeeeccccccccccCHHhHH
Q psy17515 209 ATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGS---------NDFVNIFTFSDVTVELVPCYREMLVQATDENKR 279 (1061)
Q Consensus 209 a~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~---------~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~ 279 (1061)
...+.|||||||.|+||...+++.+|+.+..++..+.. ++||+||.|+++++...| |. +..+++
T Consensus 16 ~~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~-----L~--d~~~~~ 88 (193)
T cd01477 16 KNLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVAD-----LN--DLQSFD 88 (193)
T ss_pred ccceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEe-----cc--cccCHH
Confidence 35689999999999999989999999999998887654 479999999999887554 22 223455
Q ss_pred HHHHHHh----cCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc----HHHHHHhhCCCCCCeeEE
Q psy17515 280 TLKAALA----NVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA----FKEVFKHYNWPHMPVRLF 351 (1061)
Q Consensus 280 ~lk~~I~----~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~----~~~i~~~~n~~~~~VrIf 351 (1061)
.+.++|+ .+...|+|++..||..|.++|..... +.+++..++|||||||..+. .....+++. +.+|.||
T Consensus 89 ~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~-~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~--~~GI~i~ 165 (193)
T cd01477 89 DLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKR-TSRENYKKVVIVFASDYNDEGSNDPRPIAARLK--STGIAII 165 (193)
T ss_pred HHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhc-cccCCCCeEEEEEecCccCCCCCCHHHHHHHHH--HCCCEEE
Confidence 6666666 34466899999999999999986421 12234678999999975432 233343333 5689999
Q ss_pred EEEecCCchhhhhhhhhc
Q psy17515 352 SYLIGKSSNYAEMKQMAC 369 (1061)
Q Consensus 352 TigIG~~~d~~~L~~IA~ 369 (1061)
|+|||.++|...|++|+.
T Consensus 166 tVGiG~~~d~~~~~~L~~ 183 (193)
T cd01477 166 TVAFTQDESSNLLDKLGK 183 (193)
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 999999877555555544
No 20
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.61 E-value=6.8e-15 Score=159.10 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=123.7
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
.|.||+||||+||||.+.+++.+|.+++.+++.|. +.++|+||.|+++++..++ +.. ..++..+.++|+.
T Consensus 1 ~~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~-----l~~--~~~~~~l~~~i~~ 73 (224)
T cd01475 1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFP-----LGR--FKSKADLKRAVRR 73 (224)
T ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEec-----ccc--cCCHHHHHHHHHh
Confidence 37899999999999999999999999999999985 4679999999999886543 221 2356778888888
Q ss_pred CCC-CCCcchHHHHHHHHHHHHhc-ccCCCC-CCCceEEEEEeCCCCCcHH-HHHHhhCCCCCCeeEEEEEecCCchhhh
Q psy17515 288 VKG-DNVANFTGALATAFEILHKY-NRTNQG-CQCNQAIMLVSSGPPSAFK-EVFKHYNWPHMPVRLFSYLIGKSSNYAE 363 (1061)
Q Consensus 288 l~~-~G~Tnl~~AL~~A~~~L~~~-~~~~~~-~~~~~~IvLlTDG~~~~~~-~i~~~~n~~~~~VrIfTigIG~~~d~~~ 363 (1061)
+.. +|+|+++.||..|.+.+... ...+.+ .+..++|||+|||.+.+.. +..+.+. ..+|+||++|+|. .+...
T Consensus 74 i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~~~~~a~~lk--~~gv~i~~VgvG~-~~~~~ 150 (224)
T cd01475 74 MEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKAR--ALGIEMFAVGVGR-ADEEE 150 (224)
T ss_pred CcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcccHHHHHHHHH--HCCcEEEEEeCCc-CCHHH
Confidence 864 57899999999998764432 111111 1236899999999887532 3333333 4579999999997 57889
Q ss_pred hhhhhccCCc-cceeeecccccc
Q psy17515 364 MKQMACSNKG-YFEFIKNTDRLR 385 (1061)
Q Consensus 364 L~~IA~~ngG-~y~~I~~~~dv~ 385 (1061)
|+.||...++ .++.+.+..++.
T Consensus 151 L~~ias~~~~~~~f~~~~~~~l~ 173 (224)
T cd01475 151 LREIASEPLADHVFYVEDFSTIE 173 (224)
T ss_pred HHHHhCCCcHhcEEEeCCHHHHH
Confidence 9999987654 566666655544
No 21
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.60 E-value=6.3e-15 Score=154.34 Aligned_cols=159 Identities=13% Similarity=0.220 Sum_probs=121.7
Q ss_pred ceEEEEEccCCCCCc-----chHHHHHHHHHHHHHHc---CCCCEEEEEEE-cCceeeeeccccccccccCHHhHHHHHH
Q psy17515 213 KDIVILLDASSTLST-----KHRNLARATINVILDTL---GSNDFVNIFTF-SDVTVELVPCYREMLVQATDENKRTLKA 283 (1061)
Q Consensus 213 kdVVILlD~SGSM~g-----~~l~~aK~a~~~iLdtL---~~~D~v~Vv~F-s~~~~~~~~c~~~~lv~at~~n~~~lk~ 283 (1061)
+|++|+||.|+||.. +|++.||.++..+++.+ .++|+++||+| ++.+..+.|+.. +.+.+..
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~---------D~~~~~~ 74 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTG---------NPRKHIQ 74 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCC---------CHHHHHH
Confidence 689999999999985 69999999999999865 68899999999 788877666533 2345666
Q ss_pred HHhcC-CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH---HHHHhhCCCCCCeeEEEEEecCCc
Q psy17515 284 ALANV-KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK---EVFKHYNWPHMPVRLFSYLIGKSS 359 (1061)
Q Consensus 284 ~I~~l-~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~---~i~~~~n~~~~~VrIfTigIG~~~ 359 (1061)
.+..+ .+.|+|++..||..|++.|+..... ...++|||+|||...+.. ++.+++. +.+|+|+++|||.+
T Consensus 75 ~L~~~~~~~G~t~l~~aL~~A~~~l~~~~~~----~~~~iiil~sd~~~~~~~~~~~~~~~l~--~~~I~v~~IgiG~~- 147 (183)
T cd01453 75 ALKTARECSGEPSLQNGLEMALESLKHMPSH----GSREVLIIFSSLSTCDPGNIYETIDKLK--KENIRVSVIGLSAE- 147 (183)
T ss_pred HhhcccCCCCchhHHHHHHHHHHHHhcCCcc----CceEEEEEEcCCCcCChhhHHHHHHHHH--HcCcEEEEEEechH-
Confidence 66655 5678899999999999999753211 124588889998866433 3333333 45799999999964
Q ss_pred hhhhhhhhhccCCccceeeecccccccee
Q psy17515 360 NYAEMKQMACSNKGYFEFIKNTDRLRMKV 388 (1061)
Q Consensus 360 d~~~L~~IA~~ngG~y~~I~~~~dv~e~v 388 (1061)
...|++||..+||.|+.+.+..++.+.+
T Consensus 148 -~~~L~~ia~~tgG~~~~~~~~~~l~~~~ 175 (183)
T cd01453 148 -MHICKEICKATNGTYKVILDETHLKELL 175 (183)
T ss_pred -HHHHHHHHHHhCCeeEeeCCHHHHHHHH
Confidence 4589999999999999988766665433
No 22
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.60 E-value=1.3e-14 Score=149.13 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=117.2
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
.||+||||.||||.+.++..+|.+++.+++.|. ++++|+||.|++++....+ +. ...+.+.+.+.|+.+.
T Consensus 1 ~Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~-----l~--~~~~~~~l~~~l~~~~ 73 (164)
T cd01482 1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFD-----LN--AYTSKEDVLAAIKNLP 73 (164)
T ss_pred CCEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEe-----cC--CCCCHHHHHHHHHhCc
Confidence 389999999999999999999999999999874 6799999999999876543 21 2245678889999886
Q ss_pred -CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH-HHHHHhhCCCCCCeeEEEEEecCCchhhhhhhh
Q psy17515 290 -GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF-KEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQM 367 (1061)
Q Consensus 290 -~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~-~~i~~~~n~~~~~VrIfTigIG~~~d~~~L~~I 367 (1061)
++|+|+++.||..|.+.+..... +......++|||+|||.++.. .++.+.+. ..+|.||++|+|. ++...|+.|
T Consensus 74 ~~~g~T~~~~aL~~a~~~~~~~~~-~~r~~~~k~iillTDG~~~~~~~~~a~~lk--~~gi~i~~ig~g~-~~~~~L~~i 149 (164)
T cd01482 74 YKGGNTRTGKALTHVREKNFTPDA-GARPGVPKVVILITDGKSQDDVELPARVLR--NLGVNVFAVGVKD-ADESELKMI 149 (164)
T ss_pred CCCCCChHHHHHHHHHHHhccccc-CCCCCCCEEEEEEcCCCCCchHHHHHHHHH--HCCCEEEEEecCc-CCHHHHHHH
Confidence 67899999999999876544221 123346789999999999754 23333333 4689999999987 568889999
Q ss_pred hccCCc
Q psy17515 368 ACSNKG 373 (1061)
Q Consensus 368 A~~ngG 373 (1061)
|.....
T Consensus 150 a~~~~~ 155 (164)
T cd01482 150 ASKPSE 155 (164)
T ss_pred hCCCch
Confidence 988654
No 23
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.59 E-value=1.8e-14 Score=150.06 Aligned_cols=159 Identities=12% Similarity=0.162 Sum_probs=121.8
Q ss_pred eEEEEEccCCCCCcchHHHHHHHHHHHHHHcCC---CCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC-
Q psy17515 214 DIVILLDASSTLSTKHRNLARATINVILDTLGS---NDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK- 289 (1061)
Q Consensus 214 dVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~---~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~- 289 (1061)
||+||||.||||.+..++.+|..++.+++.|.. +.+|+||.|+++++..++ +. ...+...+.++|+.+.
T Consensus 2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~-l~------~~~~~~~~~~~i~~~~~ 74 (177)
T cd01469 2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFT-LN------EYRTKEEPLSLVKHISQ 74 (177)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEe-cC------ccCCHHHHHHHHHhCcc
Confidence 899999999999999999999999999999874 689999999999876543 22 1234566778888874
Q ss_pred CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH---HHHHhhCCCCCCeeEEEEEecCCch----hh
Q psy17515 290 GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK---EVFKHYNWPHMPVRLFSYLIGKSSN----YA 362 (1061)
Q Consensus 290 ~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~---~i~~~~n~~~~~VrIfTigIG~~~d----~~ 362 (1061)
.+|+|+++.||..|.+.+..... +..+...+++||+|||..+... ++.+..+ ..+|.||++|+|...+ ..
T Consensus 75 ~~g~T~~~~AL~~a~~~l~~~~~-g~R~~~~kv~illTDG~~~~~~~~~~~~~~~k--~~gv~v~~Vgvg~~~~~~~~~~ 151 (177)
T cd01469 75 LLGLTNTATAIQYVVTELFSESN-GARKDATKVLVVITDGESHDDPLLKDVIPQAE--REGIIRYAIGVGGHFQRENSRE 151 (177)
T ss_pred CCCCccHHHHHHHHHHHhcCccc-CCCCCCCeEEEEEeCCCCCCccccHHHHHHHH--HCCcEEEEEEecccccccccHH
Confidence 56789999999999988743221 1233578899999999998643 3333332 4689999999998743 68
Q ss_pred hhhhhhccCCc-cceeeeccc
Q psy17515 363 EMKQMACSNKG-YFEFIKNTD 382 (1061)
Q Consensus 363 ~L~~IA~~ngG-~y~~I~~~~ 382 (1061)
+|+.||+..++ .++.+.+..
T Consensus 152 ~L~~ias~p~~~h~f~~~~~~ 172 (177)
T cd01469 152 ELKTIASKPPEEHFFNVTDFA 172 (177)
T ss_pred HHHHHhcCCcHHhEEEecCHH
Confidence 99999998765 455565543
No 24
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.59 E-value=3.3e-14 Score=147.81 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=116.7
Q ss_pred CceEEEEEccCCCCCc------chHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH
Q psy17515 212 PKDIVILLDASSTLST------KHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL 285 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g------~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I 285 (1061)
..|++|+||+|+||.+ .+++.||.++..++.. .++|+|+|+.|++.+..+.+ .+ .+...+.+.+
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~-~~~~~v~lv~f~~~~~~~~~--------~~-~~~~~~~~~l 71 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDR-RENDRIGLVVFAGAAFTQAP--------LT-LDRESLKELL 71 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEEEcCCeeeccC--------CC-ccHHHHHHHH
Confidence 5689999999999974 3689999999988876 47999999999998764332 11 2334445555
Q ss_pred hcC---CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH----HHHHhhCCCCCCeeEEEEEecC-
Q psy17515 286 ANV---KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK----EVFKHYNWPHMPVRLFSYLIGK- 357 (1061)
Q Consensus 286 ~~l---~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~----~i~~~~n~~~~~VrIfTigIG~- 357 (1061)
+.+ .+.|+|++..||..|++.+..... ..+.|||+|||.++.+. +..+.. ...+|+||+++||.
T Consensus 72 ~~l~~~~~~g~T~l~~al~~a~~~l~~~~~------~~~~iiliTDG~~~~g~~~~~~~~~~~--~~~gi~i~~i~ig~~ 143 (180)
T cd01467 72 EDIKIGLAGQGTAIGDAIGLAIKRLKNSEA------KERVIVLLTDGENNAGEIDPATAAELA--KNKGVRIYTIGVGKS 143 (180)
T ss_pred HHhhhcccCCCCcHHHHHHHHHHHHHhcCC------CCCEEEEEeCCCCCCCCCCHHHHHHHH--HHCCCEEEEEEecCC
Confidence 554 367899999999999999876421 34699999999887432 222222 24579999999998
Q ss_pred ----------CchhhhhhhhhccCCccceeeecccc
Q psy17515 358 ----------SSNYAEMKQMACSNKGYFEFIKNTDR 383 (1061)
Q Consensus 358 ----------~~d~~~L~~IA~~ngG~y~~I~~~~d 383 (1061)
+.+...|+.+|..++|.|+.+.+..+
T Consensus 144 ~~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~~~~~ 179 (180)
T cd01467 144 GSGPKPDGSTILDEDSLVEIADKTGGRIFRALDGFE 179 (180)
T ss_pred CCCcCCCCcccCCHHHHHHHHHhcCCEEEEecCccc
Confidence 46788999999999999988876543
No 25
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.59 E-value=3.1e-15 Score=152.76 Aligned_cols=155 Identities=25% Similarity=0.390 Sum_probs=118.1
Q ss_pred eEEEEEccCCCCCcc-----hHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcC
Q psy17515 214 DIVILLDASSTLSTK-----HRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANV 288 (1061)
Q Consensus 214 dVVILlD~SGSM~g~-----~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l 288 (1061)
||+||||.||||.+. +++.+|.++..+++.++ +|+|+|+.|++......+ + ..+...+++.+.++
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~f~~~~~~~~~-----~----t~~~~~~~~~l~~~ 70 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GDRVGLVSFSDSSRTLSP-----L----TSDKDELKNALNKL 70 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TSEEEEEEESTSCEEEEE-----E----ESSHHHHHHHHHTH
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CCEEEEEEeccccccccc-----c----cccHHHHHHHhhcc
Confidence 799999999999976 79999999999999985 889999999998654332 1 14677778888777
Q ss_pred C----CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH-HHHHHhhCCCCCCeeEEEEEecCCch-hh
Q psy17515 289 K----GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF-KEVFKHYNWPHMPVRLFSYLIGKSSN-YA 362 (1061)
Q Consensus 289 ~----~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~-~~i~~~~n~~~~~VrIfTigIG~~~d-~~ 362 (1061)
. +.|+|++..|+..|.++|.... ...+.|||+|||.++.. .+.++.+. ..+|+||++++|.+.. ..
T Consensus 71 ~~~~~~~~~t~~~~al~~a~~~~~~~~------~~~~~iv~iTDG~~~~~~~~~~~~~~--~~~i~i~~v~~~~~~~~~~ 142 (172)
T PF13519_consen 71 SPQGMPGGGTNLYDALQEAAKMLASSD------NRRRAIVLITDGEDNSSDIEAAKALK--QQGITIYTVGIGSDSDANE 142 (172)
T ss_dssp HHHG--SSS--HHHHHHHHHHHHHC-S------SEEEEEEEEES-TTHCHHHHHHHHHH--CTTEEEEEEEES-TT-EHH
T ss_pred cccccCccCCcHHHHHHHHHHHHHhCC------CCceEEEEecCCCCCcchhHHHHHHH--HcCCeEEEEEECCCccHHH
Confidence 5 4689999999999999998653 25679999999988742 23444443 5679999999999844 58
Q ss_pred hhhhhhccCCccceee-eccccccc
Q psy17515 363 EMKQMACSNKGYFEFI-KNTDRLRM 386 (1061)
Q Consensus 363 ~L~~IA~~ngG~y~~I-~~~~dv~e 386 (1061)
.|+++|..++|.|+.+ .+.+++..
T Consensus 143 ~l~~la~~tgG~~~~~~~~~~~l~~ 167 (172)
T PF13519_consen 143 FLQRLAEATGGRYFHVDNDPEDLDD 167 (172)
T ss_dssp HHHHHHHHTEEEEEEE-SSSHHHHH
T ss_pred HHHHHHHhcCCEEEEecCCHHHHHH
Confidence 9999999999999998 46555543
No 26
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.59 E-value=2.3e-14 Score=145.02 Aligned_cols=149 Identities=21% Similarity=0.260 Sum_probs=119.8
Q ss_pred eEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCCC
Q psy17515 214 DIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKG 290 (1061)
Q Consensus 214 dVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~ 290 (1061)
||+||||+||||.+.+++.++.++..++..+. ++++++|+.|++.+...++.... .+.+.+.+.|+.+..
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~ 74 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDY-------KSKDDLLKAVKNLKY 74 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCC-------CCHHHHHHHHHhccc
Confidence 79999999999999899999999999999987 48999999999987765543321 157788888988854
Q ss_pred -CC-CcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH---HHHHHhhCCCCCCeeEEEEEecCCchhhhhh
Q psy17515 291 -DN-VANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF---KEVFKHYNWPHMPVRLFSYLIGKSSNYAEMK 365 (1061)
Q Consensus 291 -~G-~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~---~~i~~~~n~~~~~VrIfTigIG~~~d~~~L~ 365 (1061)
.| +|++..||..|++.+..... ......++|||+|||.++.. .+.++++. +.+++|++|++|. .+...|+
T Consensus 75 ~~~~~t~~~~al~~a~~~~~~~~~--~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~--~~~v~v~~i~~g~-~~~~~l~ 149 (161)
T cd01450 75 LGGGGTNTGKALQYALEQLFSESN--ARENVPKVIIVLTDGRSDDGGDPKEAAAKLK--DEGIKVFVVGVGP-ADEEELR 149 (161)
T ss_pred CCCCCccHHHHHHHHHHHhccccc--ccCCCCeEEEEECCCCCCCCcchHHHHHHHH--HCCCEEEEEeccc-cCHHHHH
Confidence 33 89999999999999886542 12346789999999999864 34555444 4579999999998 7889999
Q ss_pred hhhccCCcc
Q psy17515 366 QMACSNKGY 374 (1061)
Q Consensus 366 ~IA~~ngG~ 374 (1061)
.+|...++.
T Consensus 150 ~la~~~~~~ 158 (161)
T cd01450 150 EIASCPSER 158 (161)
T ss_pred HHhCCCCCC
Confidence 999887443
No 27
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.58 E-value=1.9e-14 Score=145.75 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=108.0
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCCCC
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGD 291 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~~ 291 (1061)
++|+|+||+||||.+.++..++.++..++..+. .+|+|+|+.|+++... . ......+...+.+.+..+.++
T Consensus 1 ~~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~-~-------~~~~~~~~~~~~~~l~~~~~~ 72 (152)
T cd01462 1 GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQT-K-------IVDKTDDLEEPVEFLSGVQLG 72 (152)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceE-E-------ecCCcccHHHHHHHHhcCCCC
Confidence 589999999999999999999999999998877 4899999999988321 1 112345677788888888889
Q ss_pred CCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCC-CCcHHHHHHhhCC-CCCCeeEEEEEecCCchhhhhhhhh
Q psy17515 292 NVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGP-PSAFKEVFKHYNW-PHMPVRLFSYLIGKSSNYAEMKQMA 368 (1061)
Q Consensus 292 G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~-~~~~~~i~~~~n~-~~~~VrIfTigIG~~~d~~~L~~IA 368 (1061)
|+|++..||..+++.+..... ....||+||||. .....+.++..+. ...+++|+++|+|.+.+...++-.|
T Consensus 73 ggT~l~~al~~a~~~l~~~~~------~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~ 145 (152)
T cd01462 73 GGTDINKALRYALELIERRDP------RKADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDHGNPGYDRISA 145 (152)
T ss_pred CCcCHHHHHHHHHHHHHhcCC------CCceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCCCCchHHHHhh
Confidence 999999999999999876421 235999999995 4444444321111 3457999999999987766554333
No 28
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.56 E-value=3.8e-14 Score=149.58 Aligned_cols=147 Identities=18% Similarity=0.282 Sum_probs=112.9
Q ss_pred eEEEEEccCCCCCcchHH-HHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 214 DIVILLDASSTLSTKHRN-LARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 214 dVVILlD~SGSM~g~~l~-~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
||+||||.|+||....+. .+|..++.+++.|. .+++|+||.|++.++...| +......++..+.++|+.+.
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~-----~~~~~~~~~~~l~~~i~~l~ 76 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVP-----FSDEERYDKNELLKKINDLK 76 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEe-----cCcccccCHHHHHHHHHHHH
Confidence 899999999999988787 48999999999986 5689999999999876554 22333345677777777663
Q ss_pred ----CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH-----HHHHhhCCCCCCeeEEEEEecCCch
Q psy17515 290 ----GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK-----EVFKHYNWPHMPVRLFSYLIGKSSN 360 (1061)
Q Consensus 290 ----~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~-----~i~~~~n~~~~~VrIfTigIG~~~d 360 (1061)
.+|+|+++.||++|.+.+..... ..+...+++||||||..+... +..+.+ .+.+|.||++|||.. +
T Consensus 77 ~~~~~~g~T~~~~AL~~a~~~~~~~~~--~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~l--k~~gV~i~~vGiG~~-~ 151 (192)
T cd01473 77 NSYRSGGETYIVEALKYGLKNYTKHGN--RRKDAPKVTMLFTDGNDTSASKKELQDISLLY--KEENVKLLVVGVGAA-S 151 (192)
T ss_pred hccCCCCcCcHHHHHHHHHHHhccCCC--CcccCCeEEEEEecCCCCCcchhhHHHHHHHH--HHCCCEEEEEEeccc-c
Confidence 47899999999999998865422 123357899999999998632 222223 356899999999984 6
Q ss_pred hhhhhhhhcc
Q psy17515 361 YAEMKQMACS 370 (1061)
Q Consensus 361 ~~~L~~IA~~ 370 (1061)
..+|+.||..
T Consensus 152 ~~el~~ia~~ 161 (192)
T cd01473 152 ENKLKLLAGC 161 (192)
T ss_pred HHHHHHhcCC
Confidence 6789999875
No 29
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.56 E-value=5.8e-14 Score=143.70 Aligned_cols=153 Identities=14% Similarity=0.204 Sum_probs=114.3
Q ss_pred eEEEEEccCCCCCcchHHHHHHHHHHHHHHcCC---CCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCCC
Q psy17515 214 DIVILLDASSTLSTKHRNLARATINVILDTLGS---NDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKG 290 (1061)
Q Consensus 214 dVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~---~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~ 290 (1061)
|++||||+||||.+ ++..+|.+++.++..|.. .++|+||.|+++....+. + .+. ...++..+.+.|+.+..
T Consensus 2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~-~--~l~--~~~~~~~l~~~i~~l~~ 75 (163)
T cd01476 2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVR-F--NLP--KHNDGEELLEKVDNLRF 75 (163)
T ss_pred CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEE-e--cCC--CCCCHHHHHHHHHhCcc
Confidence 79999999999987 688899999999999875 899999999995332111 0 111 12356788999999974
Q ss_pred -CCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH-HHHHhhCCCCCCeeEEEEEecCC--chhhhhhh
Q psy17515 291 -DNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK-EVFKHYNWPHMPVRLFSYLIGKS--SNYAEMKQ 366 (1061)
Q Consensus 291 -~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~-~i~~~~n~~~~~VrIfTigIG~~--~d~~~L~~ 366 (1061)
+|+|++..||..|.+++.+... ..+...++|||+|||.++... ...+.+. ...+|.||++++|+. .+...|+.
T Consensus 76 ~gg~T~l~~aL~~a~~~l~~~~~--~r~~~~~~villTDG~~~~~~~~~~~~l~-~~~~v~v~~vg~g~~~~~~~~~L~~ 152 (163)
T cd01476 76 IGGTTATGAAIEVALQQLDPSEG--RREGIPKVVVVLTDGRSHDDPEKQARILR-AVPNIETFAVGTGDPGTVDTEELHS 152 (163)
T ss_pred CCCCccHHHHHHHHHHHhccccC--CCCCCCeEEEEECCCCCCCchHHHHHHHh-hcCCCEEEEEECCCccccCHHHHHH
Confidence 6789999999999999863221 122345799999999887542 2333333 136799999999998 89999999
Q ss_pred hhccCCccc
Q psy17515 367 MACSNKGYF 375 (1061)
Q Consensus 367 IA~~ngG~y 375 (1061)
||......|
T Consensus 153 ia~~~~~~~ 161 (163)
T cd01476 153 ITGNEDHIF 161 (163)
T ss_pred HhCCCcccc
Confidence 987666544
No 30
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.55 E-value=3.5e-14 Score=159.94 Aligned_cols=163 Identities=21% Similarity=0.220 Sum_probs=124.4
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHH-cCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDT-LGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdt-L~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
.|.+++||||+||||.+ ++..+++++..+++. +.++|+++|+.|++++..+.+ ...+...+.++|+.+.
T Consensus 52 ~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~---------~t~~~~~l~~~l~~l~ 121 (296)
T TIGR03436 52 LPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQD---------FTSDPRLLEAALNRLK 121 (296)
T ss_pred CCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeec---------CCCCHHHHHHHHHhcc
Confidence 58999999999999986 688999999999987 889999999999998765432 1245788999999987
Q ss_pred C---------------CCCcchHHHHHHHH-HHHHhcccCCCCCCCceEEEEEeCCCCCcHH----HHHHhhCCCCCCee
Q psy17515 290 G---------------DNVANFTGALATAF-EILHKYNRTNQGCQCNQAIMLVSSGPPSAFK----EVFKHYNWPHMPVR 349 (1061)
Q Consensus 290 ~---------------~G~Tnl~~AL~~A~-~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~----~i~~~~n~~~~~Vr 349 (1061)
+ .|+|++..|+..|. +++.+..... ...++||+||||..+... ++++..+ ..+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~---p~rk~iIllTDG~~~~~~~~~~~~~~~~~--~~~v~ 196 (296)
T TIGR03436 122 PPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGI---PGRKALIVISDGGDNRSRDTLERAIDAAQ--RADVA 196 (296)
T ss_pred CCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCC---CCCeEEEEEecCCCcchHHHHHHHHHHHH--HcCCE
Confidence 6 79999999987664 5554432211 134689999999987543 3444333 45799
Q ss_pred EEEEEecCC-------------chhhhhhhhhccCCccceeeeccccccceee
Q psy17515 350 LFSYLIGKS-------------SNYAEMKQMACSNKGYFEFIKNTDRLRMKVF 389 (1061)
Q Consensus 350 IfTigIG~~-------------~d~~~L~~IA~~ngG~y~~I~~~~dv~e~v~ 389 (1061)
||+|++|.. .+.+.|+.||..+||.++.+ +..++...+.
T Consensus 197 vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~~~~l~~~f~ 248 (296)
T TIGR03436 197 IYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-NSNDLDGAFA 248 (296)
T ss_pred EEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecc-cCccHHHHHH
Confidence 999999842 24678999999999998877 6555554443
No 31
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.51 E-value=1.9e-13 Score=141.82 Aligned_cols=142 Identities=15% Similarity=0.252 Sum_probs=105.6
Q ss_pred eEEEEEccCCCCCc-chHHHHHHHHHHHHHHcCC-CCEEEEEEEcCce--eeeeccccccccc---cCHHhHHHHHHHHh
Q psy17515 214 DIVILLDASSTLST-KHRNLARATINVILDTLGS-NDFVNIFTFSDVT--VELVPCYREMLVQ---ATDENKRTLKAALA 286 (1061)
Q Consensus 214 dVVILlD~SGSM~g-~~l~~aK~a~~~iLdtL~~-~D~v~Vv~Fs~~~--~~~~~c~~~~lv~---at~~n~~~lk~~I~ 286 (1061)
.|+||||+||||.+ .+++.||+++..+++.|.. +|+++|+.|++.+ .... .++. .+......+...|.
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~ 76 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERV-----RWIKIKDFDESLHERARKRLA 76 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccce-----EEEEecCcccccchhHHHHHH
Confidence 47899999999998 6999999999999999985 9999999999874 1100 1111 11111245778888
Q ss_pred cCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH----------HH---HHhhCCCCCCeeEEEE
Q psy17515 287 NVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK----------EV---FKHYNWPHMPVRLFSY 353 (1061)
Q Consensus 287 ~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~----------~i---~~~~n~~~~~VrIfTi 353 (1061)
.+.++|+|++..||..|.+.+.... ...++|||||||.++... +. .+.. ...+|++|++
T Consensus 77 ~~~~~g~T~~~~al~~a~~~l~~~~------~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gi~v~~i 148 (174)
T cd01454 77 ALSPGGNTRDGAAIRHAAERLLARP------EKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEA--RKLGIEVFGI 148 (174)
T ss_pred ccCCCCCCcHHHHHHHHHHHHhcCC------CcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHH--HhCCcEEEEE
Confidence 9999999999999999999998642 235699999999998531 22 2222 2458999999
Q ss_pred EecCCch---hhhhhhhh
Q psy17515 354 LIGKSSN---YAEMKQMA 368 (1061)
Q Consensus 354 gIG~~~d---~~~L~~IA 368 (1061)
|||.+.. .+.++.|-
T Consensus 149 gig~~~~~~~~~~~~~~~ 166 (174)
T cd01454 149 TIDRDATTVDKEYLKNIF 166 (174)
T ss_pred EecCccccchHHHHHHhh
Confidence 9999864 55555543
No 32
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.49 E-value=6.1e-13 Score=136.47 Aligned_cols=156 Identities=26% Similarity=0.385 Sum_probs=126.1
Q ss_pred CceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCC---CCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcC
Q psy17515 212 PKDIVILLDASSTLSTKHRNLARATINVILDTLGS---NDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANV 288 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~---~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l 288 (1061)
|.+|+||||+|+||.+.+++.++.++..++..+.. +++++|+.|++......+ + ....+...+...+..+
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~-----~--~~~~~~~~~~~~i~~~ 73 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFP-----L--NDSRSKDALLEALASL 73 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEc-----c--cccCCHHHHHHHHHhc
Confidence 68999999999999999999999999999999986 999999999998765432 1 1345678899999999
Q ss_pred C--CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc---HHHHHHhhCCCCCCeeEEEEEecCCchhhh
Q psy17515 289 K--GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA---FKEVFKHYNWPHMPVRLFSYLIGKSSNYAE 363 (1061)
Q Consensus 289 ~--~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~---~~~i~~~~n~~~~~VrIfTigIG~~~d~~~ 363 (1061)
. ..|.|++..||..|.+.+....... ..+..+.|+++|||.+.. ..+.++..+ ..+|.|+++++|.+.+...
T Consensus 74 ~~~~~~~~~~~~al~~~~~~~~~~~~~~-~~~~~~~iviitDg~~~~~~~~~~~~~~~~--~~~i~i~~i~~~~~~~~~~ 150 (177)
T smart00327 74 SYKLGGGTNLGAALQYALENLFSKSAGS-RRGAPKVLILITDGESNDGGDLLKAAKELK--RSGVKVFVVGVGNDVDEEE 150 (177)
T ss_pred CCCCCCCchHHHHHHHHHHHhcCcCCCC-CCCCCeEEEEEcCCCCCCCccHHHHHHHHH--HCCCEEEEEEccCccCHHH
Confidence 8 4889999999999999986332211 122367999999999995 344555444 3459999999998778899
Q ss_pred hhhhhccCCcccee
Q psy17515 364 MKQMACSNKGYFEF 377 (1061)
Q Consensus 364 L~~IA~~ngG~y~~ 377 (1061)
|+.+++.++|.|..
T Consensus 151 l~~~~~~~~~~~~~ 164 (177)
T smart00327 151 LKKLASAPGGVYVF 164 (177)
T ss_pred HHHHhCCCcceEEe
Confidence 99999999998765
No 33
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.48 E-value=9.5e-14 Score=143.12 Aligned_cols=162 Identities=22% Similarity=0.315 Sum_probs=117.4
Q ss_pred eEEEEEccCCCCCcchHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH-hcC-
Q psy17515 214 DIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL-ANV- 288 (1061)
Q Consensus 214 dVVILlD~SGSM~g~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I-~~l- 288 (1061)
||+||||.|+||.+.+++.+|+++..+++.| ..+++|+|++|++.+....+ + ....+...+...+ ..+
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~-----~--~~~~~~~~~~~~i~~~~~ 73 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFS-----L--TDYQSKNDLLNAINDSIP 73 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEE-----T--TSHSSHHHHHHHHHTTGG
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccc-----c--cccccccccccccccccc
Confidence 7999999999999999999999999999976 47889999999999886442 1 1223456667766 555
Q ss_pred CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH---HHHhhCCCCCCeeEEEEEecCCchhhhhh
Q psy17515 289 KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE---VFKHYNWPHMPVRLFSYLIGKSSNYAEMK 365 (1061)
Q Consensus 289 ~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~---i~~~~n~~~~~VrIfTigIG~~~d~~~L~ 365 (1061)
..+|+|+++.||..|.+.+..... +.++...++||++|||.+..... ...... ...+|.++++|+ ..++...|+
T Consensus 74 ~~~g~t~~~~aL~~a~~~l~~~~~-~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~-~~~~i~~~~ig~-~~~~~~~l~ 150 (178)
T PF00092_consen 74 SSGGGTNLGAALKFAREQLFSSNN-GGRPNSPKVIILITDGNSNDSDSPSEEAANLK-KSNGIKVIAIGI-DNADNEELR 150 (178)
T ss_dssp CCBSSB-HHHHHHHHHHHTTSGGG-TTGTTSEEEEEEEESSSSSSHSGHHHHHHHHH-HHCTEEEEEEEE-SCCHHHHHH
T ss_pred ccchhhhHHHHHhhhhhccccccc-ccccccccceEEEEeecccCCcchHHHHHHHH-HhcCcEEEEEec-CcCCHHHHH
Confidence 577899999999999999887522 22345788999999999997632 111111 113566666666 358999999
Q ss_pred hhhccC--Cccceeeecccccc
Q psy17515 366 QMACSN--KGYFEFIKNTDRLR 385 (1061)
Q Consensus 366 ~IA~~n--gG~y~~I~~~~dv~ 385 (1061)
.||... .+.+..+.+..++.
T Consensus 151 ~la~~~~~~~~~~~~~~~~~l~ 172 (178)
T PF00092_consen 151 ELASCPTSEGHVFYLADFSDLS 172 (178)
T ss_dssp HHSHSSTCHHHEEEESSHHHHH
T ss_pred HHhCCCCCCCcEEEcCCHHHHH
Confidence 999654 35666676655554
No 34
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.48 E-value=6.7e-13 Score=136.80 Aligned_cols=150 Identities=21% Similarity=0.209 Sum_probs=115.0
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
+||+||||.|+||....++.+|+.++.+++.|. .+.+|+||.|+++++..++ +- ...+++.+.++|+.+.
T Consensus 1 ~DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~-----l~--~~~~~~~l~~~i~~i~ 73 (165)
T cd01481 1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFY-----LN--THSTKADVLGAVRRLR 73 (165)
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEe-----cc--ccCCHHHHHHHHHhcc
Confidence 589999999999998999999999999999986 4579999999999875432 21 2336788999999996
Q ss_pred CC-C-CcchHHHHHHHHHHHHhcc-cCCCCCCCceEEEEEeCCCCCcHHH-HHHhhCCCCCCeeEEEEEecCCchhhhhh
Q psy17515 290 GD-N-VANFTGALATAFEILHKYN-RTNQGCQCNQAIMLVSSGPPSAFKE-VFKHYNWPHMPVRLFSYLIGKSSNYAEMK 365 (1061)
Q Consensus 290 ~~-G-~Tnl~~AL~~A~~~L~~~~-~~~~~~~~~~~IvLlTDG~~~~~~~-i~~~~n~~~~~VrIfTigIG~~~d~~~L~ 365 (1061)
.. | +|+++.||..+.+.+.... ..+..++..+++|++|||...+... ..+.+. ..+|.||++|+| ..+..+|+
T Consensus 74 ~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~~~~a~~lr--~~gv~i~~vG~~-~~~~~eL~ 150 (165)
T cd01481 74 LRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDVERPAVALK--RAGIVPFAIGAR-NADLAELQ 150 (165)
T ss_pred cCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchHHHHHHHHH--HCCcEEEEEeCC-cCCHHHHH
Confidence 54 4 5899999999987654432 2222245678999999999886432 222232 457999999998 37889999
Q ss_pred hhhccCC
Q psy17515 366 QMACSNK 372 (1061)
Q Consensus 366 ~IA~~ng 372 (1061)
.||....
T Consensus 151 ~ias~p~ 157 (165)
T cd01481 151 QIAFDPS 157 (165)
T ss_pred HHhCCCc
Confidence 9998763
No 35
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=99.48 E-value=9e-14 Score=125.85 Aligned_cols=75 Identities=35% Similarity=0.816 Sum_probs=66.3
Q ss_pred ccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhhccCCccCCceEEEEEeCCCc
Q psy17515 410 WSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGR 489 (1061)
Q Consensus 410 wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~ll~~~klG~~GY~flVd~nG~ 489 (1061)
||+||.|..+ +.++++++.||++.+ |+++||+++|++++.|.+++..+++|.+||+||+|++|+
T Consensus 1 ~s~py~~~~~----------~~~vi~~s~pi~~~~------g~~~Gvv~~di~l~~l~~~i~~~~~~~~g~~~ivd~~G~ 64 (81)
T PF02743_consen 1 WSEPYVDAAT----------GQPVITISVPIYDDD------GKIIGVVGIDISLDQLSEIISNIKFGNNGYAFIVDKNGT 64 (81)
T ss_dssp E---EEETTT----------TEEEEEEEEEEEETT------TEEEEEEEEEEEHHHHHHHHTTSBBTTTBEEEEEETTSB
T ss_pred CCcCEEeCCC----------CcEEEEEEEEEECCC------CCEEEEEEEEeccceeeeEEEeeEECCCEEEEEEECCCC
Confidence 8999999875 599999999999853 899999999999999999999999999999999999999
Q ss_pred EEEcCCCCccc
Q psy17515 490 IIYHPDFRPLY 500 (1061)
Q Consensus 490 VL~HPdl~~~~ 500 (1061)
+|+||+.+.+.
T Consensus 65 ii~hp~~~~i~ 75 (81)
T PF02743_consen 65 IIAHPDKDLIN 75 (81)
T ss_dssp BCE-SSGGCTT
T ss_pred EEEeCChHHhc
Confidence 99999988773
No 36
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.47 E-value=4.3e-13 Score=162.32 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=125.0
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHH-cCCCCEEEEEEEcCc-eeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDT-LGSNDFVNIFTFSDV-TVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdt-L~~~D~v~Vv~Fs~~-~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
..+..++||||+||||.+.+|..+|.++..+|+. +.+.|+|+||.|++. +..++| .+ .+...++..|+.
T Consensus 399 ~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lp--------pT-~~~~~~~~~L~~ 469 (584)
T PRK13406 399 RSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLP--------PT-RSLVRAKRSLAG 469 (584)
T ss_pred cCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcC--------CC-cCHHHHHHHHhc
Confidence 4578999999999999999999999999999855 689999999999765 554433 22 377888999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH-----------HHHHHhh-CCCCCCeeEEEEEe
Q psy17515 288 VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF-----------KEVFKHY-NWPHMPVRLFSYLI 355 (1061)
Q Consensus 288 l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~-----------~~i~~~~-n~~~~~VrIfTigI 355 (1061)
+.++|+|++..||..|++++...... +..+.|||||||..+.+ .+..... .....+|.+++|.+
T Consensus 470 l~~gGgTpL~~gL~~A~~~l~~~~~~----~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~ 545 (584)
T PRK13406 470 LPGGGGTPLAAGLDAAAALALQVRRK----GMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDT 545 (584)
T ss_pred CCCCCCChHHHHHHHHHHHHHHhccC----CCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEec
Confidence 99999999999999999998875432 24579999999999853 1111111 11345799999999
Q ss_pred cCCchhhhhhhhhccCCccceeeecc
Q psy17515 356 GKSSNYAEMKQMACSNKGYFEFIKNT 381 (1061)
Q Consensus 356 G~~~d~~~L~~IA~~ngG~y~~I~~~ 381 (1061)
|... ...++.||...+|.|+.+...
T Consensus 546 g~~~-~~~~~~LA~~~gg~y~~l~~~ 570 (584)
T PRK13406 546 SPRP-QPQARALAEAMGARYLPLPRA 570 (584)
T ss_pred CCCC-cHHHHHHHHhcCCeEEECCCC
Confidence 8654 457899999999999988753
No 37
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.46 E-value=4.1e-13 Score=158.17 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=120.7
Q ss_pred CCCceEEEEEccCCCCCcch-HHHHHHHHHHHHHHcC-CCC--EEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH
Q psy17515 210 TSPKDIVILLDASSTLSTKH-RNLARATINVILDTLG-SND--FVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL 285 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~-l~~aK~a~~~iLdtL~-~~D--~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I 285 (1061)
....||+||||+||||+-.. ++.||.++..|+..|. ..| +|+|+.|++.++.+++ +......+++.+..+|
T Consensus 40 ~~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfp-----L~s~~s~Dk~~aL~~I 114 (576)
T PTZ00441 40 NEEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIR-----LGSGASKDKEQALIIV 114 (576)
T ss_pred cCCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEe-----cCCCccccHHHHHHHH
Confidence 35789999999999997544 4899999999999996 344 4556999999887654 2222223445555555
Q ss_pred hc----CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHH---HHhhCCCCCCeeEEEEEecCC
Q psy17515 286 AN----VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEV---FKHYNWPHMPVRLFSYLIGKS 358 (1061)
Q Consensus 286 ~~----l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i---~~~~n~~~~~VrIfTigIG~~ 358 (1061)
.. +.++|+|++..||..|.+.+.... ......++|||||||.++...+. .+++. ..+|.||+||||.+
T Consensus 115 ~sL~~~~~pgGgTnig~AL~~Aae~L~sr~---~R~nvpKVVILLTDG~sns~~dvleaAq~LR--~~GVeI~vIGVG~g 189 (576)
T PTZ00441 115 KSLRKTYLPYGKTNMTDALLEVRKHLNDRV---NRENAIQLVILMTDGIPNSKYRALEESRKLK--DRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHhhccCCCCccHHHHHHHHHHHHhhcc---cccCCceEEEEEecCCCCCcccHHHHHHHHH--HCCCEEEEEEeCCC
Confidence 43 457899999999999998887532 12235689999999998654332 33333 56899999999999
Q ss_pred chhhhhhhhh-c---cCCccceeeecccccccee
Q psy17515 359 SNYAEMKQMA-C---SNKGYFEFIKNTDRLRMKV 388 (1061)
Q Consensus 359 ~d~~~L~~IA-~---~ngG~y~~I~~~~dv~e~v 388 (1061)
.+..+|+.|| | .+++.|+...+..++...+
T Consensus 190 ~n~e~LrlIAgC~p~~g~c~~Y~vadf~eL~~iv 223 (576)
T PTZ00441 190 INHQFNRLLAGCRPREGKCKFYSDADWEEAKNLI 223 (576)
T ss_pred cCHHHHHHHhccCCCCCCCceEEeCCHHHHHHHH
Confidence 9999999888 3 3455666665555444333
No 38
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.41 E-value=2.3e-12 Score=157.33 Aligned_cols=157 Identities=15% Similarity=0.227 Sum_probs=124.1
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHH-cCCCCEEEEEEEcCce-eeeeccccccccccCHHhHHHHHHHHhcC
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDT-LGSNDFVNIFTFSDVT-VELVPCYREMLVQATDENKRTLKAALANV 288 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdt-L~~~D~v~Vv~Fs~~~-~~~~~c~~~~lv~at~~n~~~lk~~I~~l 288 (1061)
....++||||+||||.+.++..+|.++..++.. +...|+|+||+|++.. ..++| . ..++..++..|..+
T Consensus 406 ~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp--------~-t~~~~~~~~~L~~l 476 (589)
T TIGR02031 406 SGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLP--------P-SRSVEQAKRRLDVL 476 (589)
T ss_pred cCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECC--------C-CCCHHHHHHHHhcC
Confidence 456789999999999999999999999999875 4689999999998764 33322 2 23677788899999
Q ss_pred CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH----------------HHH---HHhhCCCCCCee
Q psy17515 289 KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF----------------KEV---FKHYNWPHMPVR 349 (1061)
Q Consensus 289 ~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~----------------~~i---~~~~n~~~~~Vr 349 (1061)
.++|+|++..||..|++.+.+.... ...+.|||||||..+.+ +++ .+++ ...+|.
T Consensus 477 ~~gGgTpL~~gL~~A~~~~~~~~~~----~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~gi~ 550 (589)
T TIGR02031 477 PGGGGTPLAAGLAAAFQTALQARSS----GGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKI--REAGMP 550 (589)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhccc----CCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHH--HhcCCe
Confidence 9999999999999999999865322 24569999999999732 111 1222 356789
Q ss_pred EEEEEecCC-chhhhhhhhhccCCccceeeeccc
Q psy17515 350 LFSYLIGKS-SNYAEMKQMACSNKGYFEFIKNTD 382 (1061)
Q Consensus 350 IfTigIG~~-~d~~~L~~IA~~ngG~y~~I~~~~ 382 (1061)
+++|++|.. ....+++.||...+|.|+.+.+..
T Consensus 551 ~~vid~~~~~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 551 ALVIDTAMRFVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred EEEEeCCCCCccchHHHHHHHhcCCcEEeCCCCC
Confidence 999999877 556789999999999999987643
No 39
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.38 E-value=4.3e-12 Score=135.21 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=127.3
Q ss_pred CCCceEEEEEccCCCCCcc-hHHHHHHHHHHHHH-HcCCCCEEEEEEEcC-ceeeeeccccccccccCHHhHHHHHHHHh
Q psy17515 210 TSPKDIVILLDASSTLSTK-HRNLARATINVILD-TLGSNDFVNIFTFSD-VTVELVPCYREMLVQATDENKRTLKAALA 286 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~-~l~~aK~a~~~iLd-tL~~~D~v~Vv~Fs~-~~~~~~~c~~~~lv~at~~n~~~lk~~I~ 286 (1061)
...-.|||+||+||||.+. ++..||-++..+|. .-...|+|+||.|.. +++.++| ...+.+.+.++|.
T Consensus 76 r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~---------pT~sv~~~~~~L~ 146 (261)
T COG1240 76 RAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLP---------PTSSVELAERALE 146 (261)
T ss_pred CcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeC---------CcccHHHHHHHHH
Confidence 3567789999999999997 89999999998875 467899999999994 5443332 3467899999999
Q ss_pred cCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH------HHHHhh-CCCCCCeeEEEEEecCC-
Q psy17515 287 NVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK------EVFKHY-NWPHMPVRLFSYLIGKS- 358 (1061)
Q Consensus 287 ~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~------~i~~~~-n~~~~~VrIfTigIG~~- 358 (1061)
.+.++|.|.+..||..|++++.+.... ++...+++|+||||.++.+. +.+... .....++.+.++.....
T Consensus 147 ~l~~GG~TPL~~aL~~a~ev~~r~~r~--~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 147 RLPTGGKTPLADALRQAYEVLAREKRR--GPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHhhcc--CCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 999999999999999999999987643 34567799999999998432 222111 11345666666666655
Q ss_pred chhhhhhhhhccCCccceeeeccccc
Q psy17515 359 SNYAEMKQMACSNKGYFEFIKNTDRL 384 (1061)
Q Consensus 359 ~d~~~L~~IA~~ngG~y~~I~~~~dv 384 (1061)
......+.||..-+|.|.+++++.+.
T Consensus 225 ~~~g~~~~iA~~~Gg~~~~L~~l~~~ 250 (261)
T COG1240 225 VRLGLAEEIARASGGEYYHLDDLSDD 250 (261)
T ss_pred ccccHHHHHHHHhCCeEEecccccch
Confidence 55667899999999999999876543
No 40
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.37 E-value=6.8e-12 Score=130.31 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=109.8
Q ss_pred ceEEEEEccCCCCC------c---chHHHHHHHHHHHHH--HcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHH
Q psy17515 213 KDIVILLDASSTLS------T---KHRNLARATINVILD--TLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTL 281 (1061)
Q Consensus 213 kdVVILlD~SGSM~------g---~~l~~aK~a~~~iLd--tL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~l 281 (1061)
|.++|+||.||||. | .+++.+|..+..+.+ .=..+|+++ |++.....-|-.-+.......+..+.+
T Consensus 1 ~~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l 77 (191)
T cd01455 1 KRLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETL 77 (191)
T ss_pred CceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHH
Confidence 67999999999992 2 478888888777763 335789999 444433211100011011112234677
Q ss_pred HHHHhcCC---CCCCcchHHHHHHHHHHHH-hcccCCCCCCCceEEEEEeCCCCCcH----HHHHHhhCCCCCCeeEEEE
Q psy17515 282 KAALANVK---GDNVANFTGALATAFEILH-KYNRTNQGCQCNQAIMLVSSGPPSAF----KEVFKHYNWPHMPVRLFSY 353 (1061)
Q Consensus 282 k~~I~~l~---~~G~Tnl~~AL~~A~~~L~-~~~~~~~~~~~~~~IvLlTDG~~~~~----~~i~~~~n~~~~~VrIfTi 353 (1061)
...++..+ ++.+|. .||..|.+.|+ +... ..++|||||||..+.+ .++-.+.. ...+|+||||
T Consensus 78 ~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~a------~~kvvILLTDG~n~~~~i~P~~aAa~lA-~~~gV~iytI 148 (191)
T cd01455 78 KMMHAHSQFCWSGDHTV--EATEFAIKELAAKEDF------DEAIVIVLSDANLERYGIQPKKLADALA-REPNVNAFVI 148 (191)
T ss_pred HHHHHhcccCccCccHH--HHHHHHHHHHHhcCcC------CCcEEEEEeCCCcCCCCCChHHHHHHHH-HhCCCEEEEE
Confidence 77777775 334566 99999999997 5322 3579999999998743 22222223 4568999999
Q ss_pred EecCCchhhhhhhhhccCCccceeeeccccccce
Q psy17515 354 LIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMK 387 (1061)
Q Consensus 354 gIG~~~d~~~L~~IA~~ngG~y~~I~~~~dv~e~ 387 (1061)
|||.. +.+.|+.+|..++|.|++..+.+++.+.
T Consensus 149 giG~~-d~~~l~~iA~~tgG~~F~A~d~~~L~~i 181 (191)
T cd01455 149 FIGSL-SDEADQLQRELPAGKAFVCMDTSELPHI 181 (191)
T ss_pred EecCC-CHHHHHHHHhCCCCcEEEeCCHHHHHHH
Confidence 99984 5567999999999999999887766543
No 41
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.37 E-value=6.3e-12 Score=133.51 Aligned_cols=148 Identities=15% Similarity=0.243 Sum_probs=109.7
Q ss_pred CceEEEEEccCCCCCcc-------hHHHHHHHHHHHHHHcC--CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHH
Q psy17515 212 PKDIVILLDASSTLSTK-------HRNLARATINVILDTLG--SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLK 282 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g~-------~l~~aK~a~~~iLdtL~--~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk 282 (1061)
++|++|+||.||||... |++.||+++..++..+. +.|.++++.|++..... .+.+ ++.+.
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~--------~~~~---~~~v~ 70 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRY--------DNVN---SSKVD 70 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcccc--------CCcC---HHHHH
Confidence 68999999999999853 79999999999998875 57889999998875432 1222 67777
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH---H-HHhhCC--CCCCeeEEEEEec
Q psy17515 283 AALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE---V-FKHYNW--PHMPVRLFSYLIG 356 (1061)
Q Consensus 283 ~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~---i-~~~~n~--~~~~VrIfTigIG 356 (1061)
+.+.++.+.|+|++..+|..|++.+.......+.......||+||||.++.... + .+..+. ...++.|.+++||
T Consensus 71 ~~~~~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG 150 (199)
T cd01457 71 QLFAENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIG 150 (199)
T ss_pred HHHhcCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeC
Confidence 888888899999999999999865544322111111257999999999986533 2 222111 2247999999999
Q ss_pred CC-chhhhhhhhhcc
Q psy17515 357 KS-SNYAEMKQMACS 370 (1061)
Q Consensus 357 ~~-~d~~~L~~IA~~ 370 (1061)
.+ .+..+|+.++..
T Consensus 151 ~~~~~~~~L~~ld~~ 165 (199)
T cd01457 151 RDPAATAFLKALDDQ 165 (199)
T ss_pred CcHHHHHHHHHHhHH
Confidence 98 788889888753
No 42
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.36 E-value=1.7e-11 Score=122.52 Aligned_cols=146 Identities=25% Similarity=0.406 Sum_probs=116.3
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCC---CCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVILDTLGS---NDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~---~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
.+++|+||.|+||...++..++.++..++..+.. .++++|+.|++....+.+. . ...+.+.+.+.++.+.
T Consensus 1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~ 73 (161)
T cd00198 1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPL-----T--TDTDKADLLEAIDALK 73 (161)
T ss_pred CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecc-----c--ccCCHHHHHHHHHhcc
Confidence 3789999999999778999999999999999986 8999999999876554321 1 1135677778888886
Q ss_pred --CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH----HHHHhhCCCCCCeeEEEEEecCCchhhh
Q psy17515 290 --GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK----EVFKHYNWPHMPVRLFSYLIGKSSNYAE 363 (1061)
Q Consensus 290 --~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~----~i~~~~n~~~~~VrIfTigIG~~~d~~~ 363 (1061)
..|+|++..||..|.+.+.... .....+.||++|||..+... +.++.+. ..+|+|+.+++|.+.+...
T Consensus 74 ~~~~~~t~~~~al~~~~~~~~~~~----~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~--~~~v~v~~v~~g~~~~~~~ 147 (161)
T cd00198 74 KGLGGGTNIGAALRLALELLKSAK----RPNARRVIILLTDGEPNDGPELLAEAARELR--KLGITVYTIGIGDDANEDE 147 (161)
T ss_pred cCCCCCccHHHHHHHHHHHhcccC----CCCCceEEEEEeCCCCCCCcchhHHHHHHHH--HcCCEEEEEEcCCCCCHHH
Confidence 6789999999999999987653 12356799999999998642 3455444 3479999999999877888
Q ss_pred hhhhhccC
Q psy17515 364 MKQMACSN 371 (1061)
Q Consensus 364 L~~IA~~n 371 (1061)
|+.++..+
T Consensus 148 l~~l~~~~ 155 (161)
T cd00198 148 LKEIADKT 155 (161)
T ss_pred HHHHhccc
Confidence 99998876
No 43
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=99.30 E-value=4e-11 Score=146.99 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=108.6
Q ss_pred eeeeccccccccccc-----CCccccccc-cCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechH
Q psy17515 391 YVLVMARPLIMYQTE-----HPLYWSSVY-PGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQ 464 (1061)
Q Consensus 391 y~d~larp~~~~~~~-----~~~~wT~pY-~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~ 464 (1061)
.|+...||||+.+.. +.+.|+.|| .|..+ ++++++++.||++. |+++||+|+|++++
T Consensus 199 ~~d~~~r~WY~~a~~~~~~~~~~~~~~~~~~d~~t----------g~~vit~s~pv~~~-------g~~~GVv~~di~l~ 261 (570)
T PRK15426 199 YYQYVTQPWFIGQSQRRNPGRGVRWFTSQPDDASN----------TEPQVTASVPVDAG-------NYWYGVLAMDIPVR 261 (570)
T ss_pred cCCcccChHHHhhhhhcCCCCCeeEecCCcccccC----------CCeEEEEEEEEccC-------CeEEEEEEEEecHH
Confidence 368899999997532 245699998 66654 68999999999753 78999999999999
Q ss_pred HHHhhccCCc-cCCceEEEEEeCCCcEEEcCCCCcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHHhcC
Q psy17515 465 QIQKLVPQYK-LGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQK 543 (1061)
Q Consensus 465 ~L~~ll~~~k-lG~~GY~flVd~nG~VL~HPdl~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi~~~ 543 (1061)
.|.+.+.... +|.+||+||+|.+|.+|+||+..... ...+ .. .....+.+.+..++
T Consensus 262 ~l~~~l~~~~~~~~~g~~~Lvd~~G~iia~~~~~~~~----~~~~-----~~--------------~~~~~~~~~~~~~~ 318 (570)
T PRK15426 262 SLQQFLRNAIDKDLDGEYQLYDSHLRLLTSSAPGVRT----GNIF-----DP--------------RELALLARAMEHDT 318 (570)
T ss_pred HHHHHHHHhhccCCCcEEEEEcCCCcEEEecCccccc----cccc-----Cc--------------chhhHHHHHHhcCC
Confidence 9999998764 79999999999999999999654321 1000 00 01123344555555
Q ss_pred CCceeEEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcchhhhhchHH
Q psy17515 544 EGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEE 597 (1061)
Q Consensus 544 ~G~~~~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~~~~~~~~~~ 597 (1061)
.|.. ++.. +.++|.++++++|.+++++|..+ .++...
T Consensus 319 ~g~~--------~~~~------~~~~~~~i~~~~W~lv~~v~~~e---~~~~~~ 355 (570)
T PRK15426 319 RGGI--------RMGS------RYVSWERLDHFDGVLVRVHTLRE---GVRGDF 355 (570)
T ss_pred CCcc--------cccc------ceEEEEEcCCCCeEEEEEeehHH---HHHHHH
Confidence 5542 1211 25678999999999999999887 554443
No 44
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.29 E-value=2.5e-11 Score=122.57 Aligned_cols=150 Identities=16% Similarity=0.257 Sum_probs=109.1
Q ss_pred eEEEEEccCCCCCcchHHHHHHHHHHHHHHcCC------CCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 214 DIVILLDASSTLSTKHRNLARATINVILDTLGS------NDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 214 dVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~------~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
-+++|||+||||.|.+++.....++.++++|.. .-.++||+|++.++..+| ++.+. | =..-.
T Consensus 5 P~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p-----f~~~~--n-----F~~p~ 72 (207)
T COG4245 5 PCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP-----FTDAA--N-----FNPPI 72 (207)
T ss_pred CEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec-----hhhHh--h-----cCCCc
Confidence 478999999999999999999999999999974 447999999998887655 21111 1 01113
Q ss_pred CCCCCCcchHHHHHHHHHHHHhcccC---CCCCCCceEEEEEeCCCCCcHHH--HHHhhCCCCCCeeEEEEEecCC-chh
Q psy17515 288 VKGDNVANFTGALATAFEILHKYNRT---NQGCQCNQAIMLVSSGPPSAFKE--VFKHYNWPHMPVRLFSYLIGKS-SNY 361 (1061)
Q Consensus 288 l~~~G~Tnl~~AL~~A~~~L~~~~~~---~~~~~~~~~IvLlTDG~~~~~~~--i~~~~n~~~~~VrIfTigIG~~-~d~ 361 (1061)
|.+.|+|.+++||..|.+++.+..+. .......+.++|+|||.|++.-. +...........+|-.+++|.+ ++.
T Consensus 73 L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad~ 152 (207)
T COG4245 73 LTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQGERRAKSVAAFSVGVQGADN 152 (207)
T ss_pred eecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhhcccccceEEEEEeccccccc
Confidence 46789999999999999999876321 11223678999999999976422 2221221334466777888888 999
Q ss_pred hhhhhhhccCCccc
Q psy17515 362 AEMKQMACSNKGYF 375 (1061)
Q Consensus 362 ~~L~~IA~~ngG~y 375 (1061)
..|++++..-+-.+
T Consensus 153 ~~L~qit~~V~~~~ 166 (207)
T COG4245 153 KTLNQITEKVRQFL 166 (207)
T ss_pred HHHHHHHHhhcccc
Confidence 99999986655443
No 45
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.25 E-value=6.3e-11 Score=146.33 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=118.6
Q ss_pred CCCceEEEEEccCCCCCc-chHHHHHHHHHHHHH-HcCCCCEEEEEEEcCc-eeeeeccccccccccCHHhHHHHHHHHh
Q psy17515 210 TSPKDIVILLDASSTLST-KHRNLARATINVILD-TLGSNDFVNIFTFSDV-TVELVPCYREMLVQATDENKRTLKAALA 286 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g-~~l~~aK~a~~~iLd-tL~~~D~v~Vv~Fs~~-~~~~~~c~~~~lv~at~~n~~~lk~~I~ 286 (1061)
.....++||||+||||.+ .++..||.++..++. .+..+|+|+||.|++. +..++| .+ .+...+...|.
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p--------~t-~~~~~~~~~L~ 533 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLP--------PT-SSVELAARRLE 533 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcC--------CC-CCHHHHHHHHH
Confidence 456789999999999987 499999999998875 5678999999999864 443332 22 45677788999
Q ss_pred cCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH-------HHHH---HhhCCCCCCeeEEEEEec
Q psy17515 287 NVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF-------KEVF---KHYNWPHMPVRLFSYLIG 356 (1061)
Q Consensus 287 ~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~-------~~i~---~~~n~~~~~VrIfTigIG 356 (1061)
.+.++|+|++..||..|.+.+...... .......|||||||..+.. .++. +++ ...+|.+++|..+
T Consensus 534 ~l~~gG~Tpl~~aL~~A~~~l~~~~~~--~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l--~~~~i~~~vIdt~ 609 (633)
T TIGR02442 534 ELPTGGRTPLAAGLLKAAEVLSNELLR--DDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKL--AARGILFVVIDTE 609 (633)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHhhcc--CCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHH--HhcCCeEEEEeCC
Confidence 999999999999999999999853211 1235679999999999752 1221 122 2446777777776
Q ss_pred CC-chhhhhhhhhccCCccceee
Q psy17515 357 KS-SNYAEMKQMACSNKGYFEFI 378 (1061)
Q Consensus 357 ~~-~d~~~L~~IA~~ngG~y~~I 378 (1061)
.. .....++.||...+|.|+.+
T Consensus 610 ~~~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 610 SGFVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred CCCcchhHHHHHHHhhCCeEEec
Confidence 55 56788999999999998765
No 46
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.18 E-value=3.1e-10 Score=118.59 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=107.9
Q ss_pred eEEEEEccCCCCCc-----chHHHHHHHHHHHHHH---cCCCCEEEEEEEcC-ceeeeeccccccccccCHHhHHHHHHH
Q psy17515 214 DIVILLDASSTLST-----KHRNLARATINVILDT---LGSNDFVNIFTFSD-VTVELVPCYREMLVQATDENKRTLKAA 284 (1061)
Q Consensus 214 dVVILlD~SGSM~g-----~~l~~aK~a~~~iLdt---L~~~D~v~Vv~Fs~-~~~~~~~c~~~~lv~at~~n~~~lk~~ 284 (1061)
-++|+||.|.||.. .|++.+|.++..++.. ..+.+++|||.|.+ .+..+.|. ..+...++.+
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~pl---------T~D~~~~~~~ 75 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTL---------TNDQGKILSK 75 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECC---------CCCHHHHHHH
Confidence 46899999999974 5999999999988632 35788999999999 66544332 2457889999
Q ss_pred HhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCC-CCCCeeEEEEEecCC-chhh
Q psy17515 285 LANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNW-PHMPVRLFSYLIGKS-SNYA 362 (1061)
Q Consensus 285 I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~-~~~~VrIfTigIG~~-~d~~ 362 (1061)
|+.+.++|+|++..||+.|...|+.....+ ...++|++++++...+..++.+.... .+.+|+|++|+||.. .+.+
T Consensus 76 L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~---~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~ 152 (187)
T cd01452 76 LHDVQPKGKANFITGIQIAQLALKHRQNKN---QKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTE 152 (187)
T ss_pred HHhCCCCCcchHHHHHHHHHHHHhcCCCcC---CcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHH
Confidence 999999999999999999999998643221 13467788887766655443322221 356899999999988 6667
Q ss_pred hhhhhhcc
Q psy17515 363 EMKQMACS 370 (1061)
Q Consensus 363 ~L~~IA~~ 370 (1061)
.|+.+..+
T Consensus 153 ~l~~~~~~ 160 (187)
T cd01452 153 KLTAFIDA 160 (187)
T ss_pred HHHHHHHH
Confidence 77666443
No 47
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=99.15 E-value=7.8e-11 Score=105.08 Aligned_cols=70 Identities=31% Similarity=0.604 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCCceeEEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcchhhhhch--HHHHHHh
Q psy17515 532 LLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLK--EEEIKLS 602 (1061)
Q Consensus 532 l~~lr~~mi~~~~G~~~~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~~~~~~~~--~~~I~~~ 602 (1061)
..++|++||++++|..++.+++++++++|+..+.++|+|+||.+|+|+|++++|. +|.|++++ .+.|.+.
T Consensus 10 K~EiRr~MIDg~~Ge~~i~tlvks~DeRYId~~~RtYtw~PI~gT~ySLaLVLP~-Ys~~~i~A~l~d~i~q~ 81 (94)
T PF08473_consen 10 KEEIRRDMIDGRSGEKTIRTLVKSQDERYIDEVNRTYTWTPINGTDYSLALVLPS-YSMYYIQANLSDTILQA 81 (94)
T ss_pred HHHHHHHhhCCCCCcEEEEEEEeeccceeeeeeceeEEEeccCCCcceeEEEcCC-CccceeecccchHHHHH
Confidence 4799999999999999999999999999999999999999999999999999998 88999988 4455544
No 48
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.07 E-value=6.4e-10 Score=128.35 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=110.9
Q ss_pred CCccccccCccceeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHH-cCCCCEEEEEEEcCceeeeecccccccc
Q psy17515 193 PQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDT-LGSNDFVNIFTFSDVTVELVPCYREMLV 271 (1061)
Q Consensus 193 ~~~~yD~R~R~Wyi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdt-L~~~D~v~Vv~Fs~~~~~~~~c~~~~lv 271 (1061)
++..|+-+...| ..|++|||+||||.|.+...||..+..+... |.+|-++.++.|++.+..+ -+
T Consensus 261 kLl~Yr~~gk~~--------GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~-------el 325 (437)
T COG2425 261 KLLTYRLQGKSE--------GPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEY-------EL 325 (437)
T ss_pred cchhhhhhcCCC--------CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceee-------ee
Confidence 566788887777 8899999999999999999999988888764 6788899999999954322 11
Q ss_pred ccCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCC--CCCCee
Q psy17515 272 QATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNW--PHMPVR 349 (1061)
Q Consensus 272 ~at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~--~~~~Vr 349 (1061)
.....+.+++.+++....++| |++..||..|++.+++.... +--||+||||......+.+.+.+. ...+.+
T Consensus 326 ~~k~~~~~e~i~fL~~~f~GG-TD~~~~l~~al~~~k~~~~~------~adiv~ITDg~~~~~~~~~~~v~e~~k~~~~r 398 (437)
T COG2425 326 YEKKIDIEELIEFLSYVFGGG-TDITKALRSALEDLKSRELF------KADIVVITDGEDERLDDFLRKVKELKKRRNAR 398 (437)
T ss_pred cCCccCHHHHHHHHhhhcCCC-CChHHHHHHHHHHhhccccc------CCCEEEEeccHhhhhhHHHHHHHHHHHHhhce
Confidence 122347888888888887766 99999999999998875432 237899999999977333322221 356799
Q ss_pred EEEEEecCC
Q psy17515 350 LFSYLIGKS 358 (1061)
Q Consensus 350 IfTigIG~~ 358 (1061)
++++.||..
T Consensus 399 l~aV~I~~~ 407 (437)
T COG2425 399 LHAVLIGGY 407 (437)
T ss_pred EEEEEecCC
Confidence 999999974
No 49
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.95 E-value=7.4e-09 Score=121.92 Aligned_cols=137 Identities=12% Similarity=0.118 Sum_probs=102.1
Q ss_pred cCCCceEEEEEccCCCCCcchHHHHHHHHHHHHH-HcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 209 ATSPKDIVILLDASSTLSTKHRNLARATINVILD-TLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 209 a~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLd-tL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
......|+|+||+||||.|.+...||..+..+.. .+.++|+++++.|++.+... .+ ....++..+.+++..
T Consensus 320 ~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~------~l--~~~~gl~~ll~fL~~ 391 (487)
T PRK10997 320 EQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTY------EL--TGPDGLEQAIRFLSQ 391 (487)
T ss_pred CCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceee------cc--CCccCHHHHHHHHHH
Confidence 4567899999999999999998999987776655 67899999999999975531 11 123466777777765
Q ss_pred CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc-HHHHHHhhCC--CCCCeeEEEEEecCCch
Q psy17515 288 VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA-FKEVFKHYNW--PHMPVRLFSYLIGKSSN 360 (1061)
Q Consensus 288 l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~-~~~i~~~~n~--~~~~VrIfTigIG~~~d 360 (1061)
. .+|+|++..+|..|++.+.+... .+-.||+|||+.... .++.++..+. ...+.|+|++.||...+
T Consensus 392 ~-f~GGTDl~~aL~~al~~l~~~~~------r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~ 460 (487)
T PRK10997 392 S-FRGGTDLAPCLRAIIEKMQGREW------FDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGK 460 (487)
T ss_pred h-cCCCCcHHHHHHHHHHHHccccc------CCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCC
Confidence 4 58999999999999999876432 234899999997654 3443333322 34689999999996533
No 50
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=98.94 E-value=9.4e-09 Score=113.05 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=98.9
Q ss_pred ccceeecc--CCCceEEEEEccCCCCCcc-----hHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccC
Q psy17515 202 SAWFVEAA--TSPKDIVILLDASSTLSTK-----HRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQAT 274 (1061)
Q Consensus 202 R~Wyi~aa--~~pkdVVILlD~SGSM~g~-----~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at 274 (1061)
+=|..... ...-+|+|+||.|.||... +++ ||..+..+++.|. .|+|+|+.|++++..+.|- . ..
T Consensus 48 kIwlRRtkpskr~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le-~g~vgVv~Fg~~~~~v~Pl-t----~d- 119 (266)
T cd01460 48 KIWLRRTKPAKRDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLE-VGQLGVCSFGEDVQILHPF-D----EQ- 119 (266)
T ss_pred ceEEEeccCCccCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCc-CCcEEEEEeCCCceEeCCC-C----CC-
Confidence 34544443 3567999999999999753 455 7777777777664 6999999999998866552 1 11
Q ss_pred HHhHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCC--CCcHHH--HHHhhCCCCCCee
Q psy17515 275 DENKRTLKAALANV-KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGP--PSAFKE--VFKHYNWPHMPVR 349 (1061)
Q Consensus 275 ~~n~~~lk~~I~~l-~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~--~~~~~~--i~~~~n~~~~~Vr 349 (1061)
-.. +...+.++.+ ...++|++..||..|.+.|.+.+....+....++|||+|||. .+.+.. ..+++ ...+|.
T Consensus 120 ~~~-~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a--~e~~i~ 196 (266)
T cd01460 120 FSS-QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREA--REQNVF 196 (266)
T ss_pred chh-hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHH--HHcCCe
Confidence 111 4444555554 345799999999999999987642211111358999999999 554332 23333 356799
Q ss_pred EEEEEecCC
Q psy17515 350 LFSYLIGKS 358 (1061)
Q Consensus 350 IfTigIG~~ 358 (1061)
|+.++|-..
T Consensus 197 l~~I~ld~~ 205 (266)
T cd01460 197 VVFIIIDNP 205 (266)
T ss_pred EEEEEEcCC
Confidence 999988764
No 51
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=98.82 E-value=3.9e-08 Score=106.07 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=96.4
Q ss_pred ceEEEEEccCCCCC----c---chHHHHHHHHHHHHHH---cCCCCEEEEEEEcCceeeeeccccc-----cccccCHHh
Q psy17515 213 KDIVILLDASSTLS----T---KHRNLARATINVILDT---LGSNDFVNIFTFSDVTVELVPCYRE-----MLVQATDEN 277 (1061)
Q Consensus 213 kdVVILlD~SGSM~----g---~~l~~aK~a~~~iLdt---L~~~D~v~Vv~Fs~~~~~~~~c~~~-----~lv~at~~n 277 (1061)
..++|+||+|.||. | .+++.|+.++..++.. -.++|+||||.|+++......-|.. .+...+...
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~ 81 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAER 81 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHH
Confidence 35889999999994 2 6899999999999998 4899999999999875321101111 122333344
Q ss_pred HHHHHHHHhcCC--------CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH------HHHHHhhCC
Q psy17515 278 KRTLKAALANVK--------GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF------KEVFKHYNW 343 (1061)
Q Consensus 278 ~~~lk~~I~~l~--------~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~------~~i~~~~n~ 343 (1061)
.+.+.+.+..-. ..++|++..||..|.++|..... ....+.|+|||||....+ .++......
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~----~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~ 157 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKK----KKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAED 157 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccc----cccccEEEEECCCCCCCCCCHHHHHHHHHHHHH
Confidence 455554443221 24689999999999999987221 125679999999987631 222221211
Q ss_pred -CCCCeeEEEEEecCC
Q psy17515 344 -PHMPVRLFSYLIGKS 358 (1061)
Q Consensus 344 -~~~~VrIfTigIG~~ 358 (1061)
...+|.|++|++|.+
T Consensus 158 l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 158 LKDKGIELELFPLSSP 173 (218)
T ss_pred HHhCCcEEEEEecCCC
Confidence 345899999999976
No 52
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=98.81 E-value=1.5e-07 Score=98.50 Aligned_cols=143 Identities=13% Similarity=0.183 Sum_probs=99.0
Q ss_pred eEEEEEccCCCCCcc----hHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHh-c-
Q psy17515 214 DIVILLDASSTLSTK----HRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALA-N- 287 (1061)
Q Consensus 214 dVVILlD~SGSM~g~----~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~-~- 287 (1061)
.|.+|||.||||++. ..+.+.+-+..+-..|.++-.+-|+.|+++.+. +-..+..|.+...+.+. +
T Consensus 3 rV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~--------~~~vt~~~~~~~v~~~~~~~ 74 (200)
T PF10138_consen 3 RVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDR--------LPDVTLDNYEGYVDELHAGL 74 (200)
T ss_pred EEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCc--------CCCcCHHHHHHHHHHHhccc
Confidence 588999999999974 233333333444456788888999999998663 44556666554443332 2
Q ss_pred --CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCC-CCCCeeEEEEEecCCchhhhh
Q psy17515 288 --VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNW-PHMPVRLFSYLIGKSSNYAEM 364 (1061)
Q Consensus 288 --l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~-~~~~VrIfTigIG~~~d~~~L 364 (1061)
+...|+|++..+++.+.+........ .....|+++|||.+.+..++-+.... +..+|-.-=+|||.+. ..+|
T Consensus 75 ~~~~~~G~t~y~~vm~~v~~~y~~~~~~----~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~-f~fL 149 (200)
T PF10138_consen 75 PDWGRMGGTNYAPVMEDVLDHYFKREPS----DAPALVLFITDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSN-FGFL 149 (200)
T ss_pred cccCCCCCcchHHHHHHHHHHHhhcCCC----CCCeEEEEEecCCccchHHHHHHHHhccCCCeeEEEEEecCCc-chHH
Confidence 24458899999999998887754321 23458999999999976553332221 4667887789999864 7899
Q ss_pred hhhhc
Q psy17515 365 KQMAC 369 (1061)
Q Consensus 365 ~~IA~ 369 (1061)
+++..
T Consensus 150 ~kLD~ 154 (200)
T PF10138_consen 150 EKLDD 154 (200)
T ss_pred HHhhc
Confidence 99988
No 53
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=98.17 E-value=1.2e-05 Score=84.95 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=83.4
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcCceeeeec---cccccccccCHHhHHHHHHH----
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSDVTVELVP---CYREMLVQATDENKRTLKAA---- 284 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~~~~~~~---c~~~~lv~at~~n~~~lk~~---- 284 (1061)
--|-||||+||||.|.++.+|...+-.+.++|. -+-.+-|+.|.+.+-.-.+ -|...=-+..+.-...+...
T Consensus 13 ~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~vyk~ 92 (219)
T PF11775_consen 13 TVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIVYKD 92 (219)
T ss_pred eEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHHHHh
Confidence 345699999999999999999888888888876 4778889999887310000 00000001111111111111
Q ss_pred -----------HhcCC---CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH---------------H
Q psy17515 285 -----------LANVK---GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF---------------K 335 (1061)
Q Consensus 285 -----------I~~l~---~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~---------------~ 335 (1061)
+..|- ....--=++||..|.+.|.+..+ ..+++|+||||.|.+. .
T Consensus 93 a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e------~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr 166 (219)
T PF11775_consen 93 ADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPE------QRKILIVISDGAPADDSTLSANDGDYLDAHLR 166 (219)
T ss_pred cCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCc------cceEEEEEeCCCcCcccccccCChHHHHHHHH
Confidence 11111 11111224778888777766433 4569999999999832 1
Q ss_pred HHHHhhCCCCCCeeEEEEEecCC
Q psy17515 336 EVFKHYNWPHMPVRLFSYLIGKS 358 (1061)
Q Consensus 336 ~i~~~~n~~~~~VrIfTigIG~~ 358 (1061)
.+++++. ...+|.+..+|||.|
T Consensus 167 ~vi~~ie-~~~~Vel~aiGIg~D 188 (219)
T PF11775_consen 167 QVIAEIE-TRSDVELIAIGIGHD 188 (219)
T ss_pred HHHHHHh-ccCCcEEEEEEcCCC
Confidence 2344433 456799999999986
No 54
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=98.12 E-value=8.4e-06 Score=80.39 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=67.8
Q ss_pred EEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc--CCCCC
Q psy17515 215 IVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN--VKGDN 292 (1061)
Q Consensus 215 VVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~--l~~~G 292 (1061)
|+++||+||||+...+......+..|+..+ +.++.|+.|...++.... +.. ....+.. +..+|
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~-----~~~--------~~~~~~~~~~~GgG 65 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQV-----FRS--------LEDELRDIKLKGGG 65 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeE-----Eec--------ccccccccccCCCC
Confidence 579999999999988888888888888887 556999999998875321 111 1222222 35678
Q ss_pred CcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc
Q psy17515 293 VANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA 333 (1061)
Q Consensus 293 ~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~ 333 (1061)
||++..+++.+.+. . .....+|++|||....
T Consensus 66 GTdf~pvf~~~~~~----~------~~~~~vi~fTDg~~~~ 96 (126)
T PF09967_consen 66 GTDFRPVFEYLEEN----R------PRPSVVIYFTDGEGWP 96 (126)
T ss_pred CCcchHHHHHHHhc----C------CCCCEEEEEeCCCCCC
Confidence 99999999887542 1 1234788999998754
No 55
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.08 E-value=8.8e-06 Score=88.15 Aligned_cols=107 Identities=19% Similarity=0.278 Sum_probs=66.6
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHh--c
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALA--N 287 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~--~ 287 (1061)
..|..+|+|+|+||||.+..- .+...+..+...+. ++.++.|++++..+-+ .+....+ .+.+ ..+. .
T Consensus 55 ~~~~~lvvl~DvSGSM~~~s~-~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~----~l~~~~~--~~~l-~~~~~~~ 123 (222)
T PF05762_consen 55 RKPRRLVVLCDVSGSMAGYSE-FMLAFLYALQRQFR---RVRVFVFSTRLTEVTP----LLRRRDP--EEAL-ARLSALV 123 (222)
T ss_pred CCCccEEEEEeCCCChHHHHH-HHHHHHHHHHHhCC---CEEEEEEeeehhhhhh----hhccCCH--HHHH-HHHHhhc
Confidence 356699999999999987321 22233444444444 8999999998765432 1211111 1222 2222 1
Q ss_pred CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc
Q psy17515 288 VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA 333 (1061)
Q Consensus 288 l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~ 333 (1061)
..-+|||+++.||..+.+.+....- ....+|++|||..++
T Consensus 124 ~~~~GgTdi~~aL~~~~~~~~~~~~------~~t~vvIiSDg~~~~ 163 (222)
T PF05762_consen 124 QSFGGGTDIGQALREFLRQYARPDL------RRTTVVIISDGWDTN 163 (222)
T ss_pred cCCCCccHHHHHHHHHHHHhhcccc------cCcEEEEEecccccC
Confidence 2367999999999999887763211 234899999995443
No 56
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.89 E-value=0.00022 Score=83.61 Aligned_cols=164 Identities=19% Similarity=0.276 Sum_probs=127.8
Q ss_pred eeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHH
Q psy17515 205 FVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAA 284 (1061)
Q Consensus 205 yi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~ 284 (1061)
.-.....+.+..+++|+||||.+..+..++.+...++..+.+.|.+.+++|.......++ .+ ...|+..+..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~ 102 (399)
T COG2304 30 IDLDLLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIP------PT-GATNKESITAA 102 (399)
T ss_pred cccccccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecC------cc-cccCHHHHHHH
Confidence 333346799999999999999997899999999999999999999999999986544322 11 23578899999
Q ss_pred Hhc-CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH----HHHHHhhCC-CCCCeeEEEEEecCC
Q psy17515 285 LAN-VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF----KEVFKHYNW-PHMPVRLFSYLIGKS 358 (1061)
Q Consensus 285 I~~-l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~----~~i~~~~n~-~~~~VrIfTigIG~~ 358 (1061)
|+. +.+.|.|....++..+++.+...... .....+.+.|||..+.+ ......... ...++.+.++|+|.+
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~ 178 (399)
T COG2304 103 IDQSLQAGGATAVEASLSLAVELAAKALPR----GTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDD 178 (399)
T ss_pred HhhhhccccccHHHHHHHHHHHHhhhcCCc----cceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEecccc
Confidence 999 78999999999999999988875432 24458899999888643 222221121 456899999999999
Q ss_pred chhhhhhhhhccCCccceeee
Q psy17515 359 SNYAEMKQMACSNKGYFEFIK 379 (1061)
Q Consensus 359 ~d~~~L~~IA~~ngG~y~~I~ 379 (1061)
.+..++..++....|.+..+.
T Consensus 179 ~n~~~~~~~~~~~~g~l~~~~ 199 (399)
T COG2304 179 VNEDELTGIAAAANGNLAFIY 199 (399)
T ss_pred cchhhhhhhhhccCccccccc
Confidence 888888888888877665554
No 57
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.80 E-value=0.00013 Score=87.19 Aligned_cols=133 Identities=19% Similarity=0.260 Sum_probs=84.1
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcCceeeeeccccccc-----c----ccCHHhHHHHH
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSDVTVELVPCYREML-----V----QATDENKRTLK 282 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~~~~~~~c~~~~l-----v----~at~~n~~~lk 282 (1061)
--|-||||+||||.|.+..+|+..+-.|-++|. -+-.+-|+.|++.+ |++.. + +..|.-.+.+.
T Consensus 393 ~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~a------w~gg~~re~w~~~g~p~~PgRlN~l~ 466 (600)
T TIGR01651 393 TVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRA------WKGGQSREKWLKAGKPAAPGRLNDLR 466 (600)
T ss_pred cEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccc------cccccchHHHHhcCCCCCCcccchhh
Confidence 445699999999999999999887777777776 46788999999763 11110 0 11111111111
Q ss_pred HHH--hcCCC------CCCcch----------HHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH----------
Q psy17515 283 AAL--ANVKG------DNVANF----------TGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF---------- 334 (1061)
Q Consensus 283 ~~I--~~l~~------~G~Tnl----------~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~---------- 334 (1061)
..| +.-.+ ..+..+ +.||..|.+.|....+ ..+++|+||||.|.+.
T Consensus 467 hiiyk~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e------~rKiL~ViSDG~P~D~~TlsvN~~~~ 540 (600)
T TIGR01651 467 HIIYKSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPE------QRRILMMISDGAPVDDSTLSVNPGNY 540 (600)
T ss_pred hhhhhccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcc------cceEEEEEeCCCcCCccccccCchhH
Confidence 111 00000 111122 6889998888877533 4679999999999842
Q ss_pred -----HHHHHhhCCCCCCeeEEEEEecCC
Q psy17515 335 -----KEVFKHYNWPHMPVRLFSYLIGKS 358 (1061)
Q Consensus 335 -----~~i~~~~n~~~~~VrIfTigIG~~ 358 (1061)
..+++.+. ...+|.++.+|||.+
T Consensus 541 l~~hLr~vi~~~e-~~~~vel~aigIg~D 568 (600)
T TIGR01651 541 LERHLRAVIEEIE-TRSPVELLAIGIGHD 568 (600)
T ss_pred HHHHHHHHHHHHh-ccCCceEEEeecccc
Confidence 13455444 445899999999987
No 58
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=97.80 E-value=0.00062 Score=74.64 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=110.1
Q ss_pred CCceEEEEEccCCC-CCcchHHHHHHHHHHHHHHcC--CCCEEEEEEEcCceeeee---------------------ccc
Q psy17515 211 SPKDIVILLDASST-LSTKHRNLARATINVILDTLG--SNDFVNIFTFSDVTVELV---------------------PCY 266 (1061)
Q Consensus 211 ~pkdVVILlD~SGS-M~g~~l~~aK~a~~~iLdtL~--~~D~v~Vv~Fs~~~~~~~---------------------~c~ 266 (1061)
.|..++||||+|.. ....-++.++++++..|+.|+ ++-+|+||+|++.++..- |.-
T Consensus 2 ~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~ 81 (239)
T cd01468 2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLP 81 (239)
T ss_pred CCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCc
Confidence 47788999999984 445568999999999999999 999999999998775421 100
Q ss_pred cccccccCHHhHHHHHHHHhcCCCC--------CCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH--
Q psy17515 267 REMLVQATDENKRTLKAALANVKGD--------NVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE-- 336 (1061)
Q Consensus 267 ~~~lv~at~~n~~~lk~~I~~l~~~--------G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~-- 336 (1061)
.+.++. -.+.+..+.+.++.+... ....++.||+.|..+|+.... .-.|++++.|.++.+.-
T Consensus 82 ~~~l~~-~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~-------gGkI~~f~sg~pt~GpG~l 153 (239)
T cd01468 82 DRFLVP-LSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFA-------GGRIIVFQGGLPTVGPGKL 153 (239)
T ss_pred Cceeee-HHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCC-------CceEEEEECCCCCCCCCcc
Confidence 111111 124456666677766321 247899999999999998631 12677888888873211
Q ss_pred ---------------------------HHHhhCCCCCCeeEEEEEecCC-chhhhhhhhhccCCccceeee
Q psy17515 337 ---------------------------VFKHYNWPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIK 379 (1061)
Q Consensus 337 ---------------------------i~~~~n~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~ 379 (1061)
+..+. ...+|.|..|..+.+ .+...|..++..+||...+-+
T Consensus 154 ~~~~~~~~~~~~~e~~~~~~a~~fY~~la~~~--~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~ 222 (239)
T cd01468 154 KSREDKEPIRSHDEAQLLKPATKFYKSLAKEC--VKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYD 222 (239)
T ss_pred ccCcccccCCCccchhcccccHHHHHHHHHHH--HHcCeEEEEEeccccccCHHHhhhhhhcCCceEEEeC
Confidence 11111 235677777777777 899999999999999765544
No 59
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.73 E-value=0.00022 Score=80.33 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=103.8
Q ss_pred CCCceEEEEEccCCCCC--c--chHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH
Q psy17515 210 TSPKDIVILLDASSTLS--T--KHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL 285 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~--g--~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I 285 (1061)
.+...++++||+|-||- | .+++..--|+..++.|--++|-+.+|.|+..+..+ + .. .+
T Consensus 461 rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v-~-------------v~----eL 522 (652)
T COG4867 461 RTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTV-T-------------AA----EL 522 (652)
T ss_pred hcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhccc-C-------------HH----HH
Confidence 45677889999999996 3 24555555666778888899999999999987753 1 11 12
Q ss_pred hcCCC--CCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH-----------------HHHHhh----C
Q psy17515 286 ANVKG--DNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK-----------------EVFKHY----N 342 (1061)
Q Consensus 286 ~~l~~--~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~-----------------~i~~~~----n 342 (1061)
..+.+ .-+||+..||..|-..|+.... ..+.|+++|||.|+... .++... +
T Consensus 523 t~l~~v~eqgTNlhhaL~LA~r~l~Rh~~------~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~d~ 596 (652)
T COG4867 523 TGLAGVYEQGTNLHHALALAGRHLRRHAG------AQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGFDD 596 (652)
T ss_pred hcCCCccccccchHHHHHHHHHHHHhCcc------cCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHHHH
Confidence 22332 3479999999999999887543 45689999999998321 111111 1
Q ss_pred CCCCCeeEEEEEecCC-chhhhhhhhhccCCcccee
Q psy17515 343 WPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEF 377 (1061)
Q Consensus 343 ~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~ 377 (1061)
....++.|.+|-+|.+ -=..+++.+|...+|....
T Consensus 597 ~~r~G~q~t~FrLg~DpgL~~Fv~qva~rv~G~vv~ 632 (652)
T COG4867 597 MARLGAQVTIFRLGSDPGLARFIDQVARRVQGRVVV 632 (652)
T ss_pred HHhccceeeEEeecCCHhHHHHHHHHHHHhCCeEEe
Confidence 1356889999999999 5567999999999997554
No 60
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=97.67 E-value=0.00024 Score=74.79 Aligned_cols=154 Identities=12% Similarity=0.186 Sum_probs=105.0
Q ss_pred EEccCCCCCc-----chHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc--
Q psy17515 218 LLDASSTLST-----KHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN-- 287 (1061)
Q Consensus 218 LlD~SGSM~g-----~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~-- 287 (1061)
+||.|.+|.. +|+..++.++..++..+ .|=-+++|+...+..-..+. .+ ..|.+...+++..
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls----~l----sgn~~~h~~~L~~~~ 72 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLS----EL----SGNPQEHIEALKKLR 72 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEee----ec----CCCHHHHHHHHHHhc
Confidence 5899999974 58888888888888775 46679999999886443221 11 2344444444444
Q ss_pred -CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC----cHHHHHHhhCCCCCCeeEEEEEecCCchhh
Q psy17515 288 -VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS----AFKEVFKHYNWPHMPVRLFSYLIGKSSNYA 362 (1061)
Q Consensus 288 -l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~----~~~~i~~~~n~~~~~VrIfTigIG~~~d~~ 362 (1061)
..+.|...+..||+.|...|+.... ...+-|+++.-+..+ +..+.++... ..+|||-.|+++. ...
T Consensus 73 ~~~~~G~~SLqN~Le~A~~~L~~~p~-----~~srEIlvi~gSl~t~Dp~di~~ti~~l~--~~~IrvsvI~laa--Ev~ 143 (193)
T PF04056_consen 73 KLEPSGEPSLQNGLEMARSSLKHMPS-----HGSREILVIFGSLTTCDPGDIHETIESLK--KENIRVSVISLAA--EVY 143 (193)
T ss_pred cCCCCCChhHHHHHHHHHHHHhhCcc-----ccceEEEEEEeecccCCchhHHHHHHHHH--HcCCEEEEEEEhH--HHH
Confidence 4688999999999999999986532 123455554422222 2223344333 4579999999996 455
Q ss_pred hhhhhhccCCccceeeecccccccee
Q psy17515 363 EMKQMACSNKGYFEFIKNTDRLRMKV 388 (1061)
Q Consensus 363 ~L~~IA~~ngG~y~~I~~~~dv~e~v 388 (1061)
.++.|+..++|.|..+-+...+.+.+
T Consensus 144 I~k~i~~~T~G~y~V~lde~H~~~lL 169 (193)
T PF04056_consen 144 ICKKICKETGGTYGVILDEDHFKELL 169 (193)
T ss_pred HHHHHHHhhCCEEEEecCHHHHHHHH
Confidence 88999999999998887755554443
No 61
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=97.64 E-value=0.00096 Score=73.47 Aligned_cols=154 Identities=15% Similarity=0.261 Sum_probs=107.8
Q ss_pred CCceEEEEEccCCCCC---------------cchHHHHHHHHHHHHHHcCCCCEEEEEEEcCcee---eeecccc----c
Q psy17515 211 SPKDIVILLDASSTLS---------------TKHRNLARATINVILDTLGSNDFVNIFTFSDVTV---ELVPCYR----E 268 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~---------------g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~---~~~~c~~----~ 268 (1061)
..-++++-||-++|=. .+..+.|..++-.++..+..+-.+-++.|+.... .+.+||. +
T Consensus 30 ~~~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~ 109 (254)
T cd01459 30 LESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSES 109 (254)
T ss_pred CeeeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCC
Confidence 4559999999999853 1456888888889999999999999999998643 2344542 0
Q ss_pred cccccCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCC-CCCC
Q psy17515 269 MLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNW-PHMP 347 (1061)
Q Consensus 269 ~lv~at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~-~~~~ 347 (1061)
.-++.-..-++.-+..+.++...|.|++...++.|.+..++.... ....++++||||..++..+..+.... +..+
T Consensus 110 p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~----~~Y~VLLIiTDG~i~D~~~t~~aIv~AS~~P 185 (254)
T cd01459 110 PECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQ----SKYHILLIITDGEITDMNETIKAIVEASKYP 185 (254)
T ss_pred CcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCC----CceEEEEEECCCCcccHHHHHHHHHHHhcCC
Confidence 111111122344445666778889999999999999887764321 13557999999999987664443322 4568
Q ss_pred eeEEEEEecCCchhhhhhhhhc
Q psy17515 348 VRLFSYLIGKSSNYAEMKQMAC 369 (1061)
Q Consensus 348 VrIfTigIG~~~d~~~L~~IA~ 369 (1061)
+.|-.+|||. .+...|+.+..
T Consensus 186 lSIiiVGVGd-~~F~~M~~LD~ 206 (254)
T cd01459 186 LSIVIVGVGD-GPFDAMERLDD 206 (254)
T ss_pred eEEEEEEeCC-CChHHHHHhcC
Confidence 8888889986 57778887765
No 62
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.58 E-value=0.00028 Score=91.73 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=59.0
Q ss_pred eeeeeecccccccccc---cCCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHH
Q psy17515 389 FNYVLVMARPLIMYQT---EHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQ 465 (1061)
Q Consensus 389 ~~y~d~larp~~~~~~---~~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~ 465 (1061)
.+||+...++|++... .+..+|++||.+..+ + .+++.++.+. +| |++|+++.++.
T Consensus 149 ~~y~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~-----------~--~~v~~~~~~~------~~---~~~gv~v~l~~ 206 (921)
T PRK15347 149 SDYLTLRPLELKQLPLQPTHNGIYWGKPEYIPGG-----------G--WHVSVAVADK------QG---VLVGFTVKLND 206 (921)
T ss_pred hHHHHHHHHHHHhcccCCCCCCcEecccEEecCC-----------C--eEEEEeeecC------CC---ceEEEEEEhhh
Confidence 3455666677776532 245789999987643 3 3344445433 13 67777999999
Q ss_pred HHhhccCCccCCceEEEEEeCCCcEEEcCCCC
Q psy17515 466 IQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFR 497 (1061)
Q Consensus 466 L~~ll~~~klG~~GY~flVd~nG~VL~HPdl~ 497 (1061)
+.... .+++.+||+|++|++|.+++|++..
T Consensus 207 l~~~~--~~~~~~~~~~l~d~~G~vi~~~~~~ 236 (921)
T PRK15347 207 LISYN--HPVLDDDINLWLDQNGELLPFSTIP 236 (921)
T ss_pred hhhcc--CcCCCcceEEEECCCCCEeccCCCC
Confidence 87654 4556889999999999999998653
No 63
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=97.53 E-value=0.00028 Score=77.50 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=98.4
Q ss_pred CCceEEEEEccCCC-CCcchHHHHHHHHHHHHHHcC--CCCEEEEEEEcCceeeee---------------------ccc
Q psy17515 211 SPKDIVILLDASST-LSTKHRNLARATINVILDTLG--SNDFVNIFTFSDVTVELV---------------------PCY 266 (1061)
Q Consensus 211 ~pkdVVILlD~SGS-M~g~~l~~aK~a~~~iLdtL~--~~D~v~Vv~Fs~~~~~~~---------------------~c~ 266 (1061)
.|-..+||||+|.. +...-++.++++++.+|+.|+ ++.+|+||+|++.++... |+-
T Consensus 2 ~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~ 81 (243)
T PF04811_consen 2 QPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLP 81 (243)
T ss_dssp S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTS
T ss_pred CCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCc
Confidence 46778999999853 445678999999999999999 999999999999876431 222
Q ss_pred cccccccCHHhHHHHHHHHhcC---CC-----CCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH---
Q psy17515 267 REMLVQATDENKRTLKAALANV---KG-----DNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK--- 335 (1061)
Q Consensus 267 ~~~lv~at~~n~~~lk~~I~~l---~~-----~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~--- 335 (1061)
.+-++.. .+.+..+.+.|+.+ .+ .....++.||+.|..+|+..... -.|++++-|.++.+.
T Consensus 82 ~~llv~~-~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~g-------GkI~~F~s~~pt~G~Gg~ 153 (243)
T PF04811_consen 82 DGLLVPL-SECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTG-------GKILVFTSGPPTYGPGGS 153 (243)
T ss_dssp SSSSEET-TTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS--------EEEEEEESS---SSSTTS
T ss_pred ccEEEEh-HHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccC-------CEEEEEeccCCCCCCCce
Confidence 2222222 23334444444443 22 23578999999999999954322 266677777665332
Q ss_pred ----------------------------HHHHhhCCCCCCeeEEEEEecCC-chhhhhhhhhccCCccceeeec
Q psy17515 336 ----------------------------EVFKHYNWPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIKN 380 (1061)
Q Consensus 336 ----------------------------~i~~~~n~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~~ 380 (1061)
+...+. ...+|.|..|..+.+ .+...|..++..+||...+-++
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~--~~~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~ 225 (243)
T PF04811_consen 154 LKKREDSSHYDTEKEKALLLPPANEFYKKLAEEC--SKQGISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPN 225 (243)
T ss_dssp S-SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHH--HHCTEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETT
T ss_pred ecccccccccccccchhhhccccchHHHHHHHHH--HhcCCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCC
Confidence 011111 245677787888887 8999999999999997665543
No 64
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=97.52 E-value=0.0038 Score=69.56 Aligned_cols=163 Identities=19% Similarity=0.234 Sum_probs=107.4
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeec----c-----ccc-------------
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVP----C-----YRE------------- 268 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~----c-----~~~------------- 268 (1061)
.|-..+||||+|- ....++.+|+++...|+.|+++.+|++|+|++.++...- | |++
T Consensus 2 ~pp~~vFviDvs~--~~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~~~~l 79 (267)
T cd01478 2 SPPVFLFVVDTCM--DEEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDML 79 (267)
T ss_pred CCCEEEEEEECcc--CHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHHHHHh
Confidence 4677899999975 566799999999999999999999999999999865321 1 110
Q ss_pred ---------------------------cccccCHHhHHHHHHHHhcCCCC---------CCcchHHHHHHHHHHHHhccc
Q psy17515 269 ---------------------------MLVQATDENKRTLKAALANVKGD---------NVANFTGALATAFEILHKYNR 312 (1061)
Q Consensus 269 ---------------------------~lv~at~~n~~~lk~~I~~l~~~---------G~Tnl~~AL~~A~~~L~~~~~ 312 (1061)
.++..-.+.+..+...|++|.+. ....++.||..|..+|+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~~ 159 (267)
T cd01478 80 GLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFP 159 (267)
T ss_pred ccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhcC
Confidence 11111123455666777777432 246899999999999985321
Q ss_pred CCCCCCCceEEEEEeCCCCCcHHH-----------------------HH----HhhCC-----CCCCeeEEEEEecCC-c
Q psy17515 313 TNQGCQCNQAIMLVSSGPPSAFKE-----------------------VF----KHYNW-----PHMPVRLFSYLIGKS-S 359 (1061)
Q Consensus 313 ~~~~~~~~~~IvLlTDG~~~~~~~-----------------------i~----~~~n~-----~~~~VrIfTigIG~~-~ 359 (1061)
. ..-.|++++-|.++.+.- .+ +-|+. ...+|.|-.|..+.+ .
T Consensus 160 ~-----~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~v 234 (267)
T cd01478 160 N-----TGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQV 234 (267)
T ss_pred C-----CCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEecccccc
Confidence 1 122677777776653210 00 00000 134555555566666 8
Q ss_pred hhhhhhhhhccCCccceeeec
Q psy17515 360 NYAEMKQMACSNKGYFEFIKN 380 (1061)
Q Consensus 360 d~~~L~~IA~~ngG~y~~I~~ 380 (1061)
+..+|+.++..+||....-++
T Consensus 235 glaem~~l~~~TGG~v~~~~~ 255 (267)
T cd01478 235 GLLEMKVLVNSTGGHVVLSDS 255 (267)
T ss_pred CHHHHHHHHHhcCcEEEEeCC
Confidence 999999999999997665543
No 65
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=97.49 E-value=0.001 Score=73.24 Aligned_cols=159 Identities=18% Similarity=0.227 Sum_probs=106.6
Q ss_pred CCceEEEEEccCCCCC-cchHHHHHHHHHHHHHHcCCC---CEEEEEEEcCceeeee---------------------cc
Q psy17515 211 SPKDIVILLDASSTLS-TKHRNLARATINVILDTLGSN---DFVNIFTFSDVTVELV---------------------PC 265 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~-g~~l~~aK~a~~~iLdtL~~~---D~v~Vv~Fs~~~~~~~---------------------~c 265 (1061)
.|-..+||||+|-.=- ..-++.++++++..|+.++++ -+|+||+|++.++... |.
T Consensus 2 ~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~ 81 (244)
T cd01479 2 QPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPL 81 (244)
T ss_pred CCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCC
Confidence 5778999999975322 224799999999999999977 8999999999875421 11
Q ss_pred ccccccccCHHhHHHHHHHHhcCC------CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHH-
Q psy17515 266 YREMLVQATDENKRTLKAALANVK------GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVF- 338 (1061)
Q Consensus 266 ~~~~lv~at~~n~~~lk~~I~~l~------~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~- 338 (1061)
.++.++ .-.+.++.+.+.|+++. ......++.||+.|..+|+..- -.|++++.|.++.+.-.+
T Consensus 82 ~~~~lv-~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~G---------GkIi~f~s~~pt~GpG~l~ 151 (244)
T cd01479 82 PDGLLV-NLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETG---------GKIIVFQSSLPTLGAGKLK 151 (244)
T ss_pred Ccceee-cHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcC---------CEEEEEeCCCCCcCCcccc
Confidence 111122 12345666667777662 2236789999999999999421 167777778777331100
Q ss_pred ---------------------HhhCC-----CCCCeeEEEEEecCC-chhhhhhhhhccCCccceeee
Q psy17515 339 ---------------------KHYNW-----PHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIK 379 (1061)
Q Consensus 339 ---------------------~~~n~-----~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~ 379 (1061)
.-|+. ...+|.|..|....+ .+...|..++..+||...+-.
T Consensus 152 ~~~~~~~~~~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~ 219 (244)
T cd01479 152 SREDPKLLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYP 219 (244)
T ss_pred cCccccccCchhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcCceEEEEC
Confidence 00000 244666777777766 889999999999999755544
No 66
>KOG3768|consensus
Probab=97.39 E-value=0.00057 Score=79.81 Aligned_cols=159 Identities=19% Similarity=0.323 Sum_probs=102.4
Q ss_pred EEEEEccCCCCCc------chHHHHHHHHHHHHHHc-----CCCCEEEEEEEcCceeee-eccccccccccCHHhHHHHH
Q psy17515 215 IVILLDASSTLST------KHRNLARATINVILDTL-----GSNDFVNIFTFSDVTVEL-VPCYREMLVQATDENKRTLK 282 (1061)
Q Consensus 215 VVILlD~SGSM~g------~~l~~aK~a~~~iLdtL-----~~~D~v~Vv~Fs~~~~~~-~~c~~~~lv~at~~n~~~lk 282 (1061)
++||||+||||.. .-+++||.|+.+++..- .-+||+-+++|..-...+ +.| ..+-..+.
T Consensus 4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~---------~~~~a~~~ 74 (888)
T KOG3768|consen 4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVAC---------EKLGAVVI 74 (888)
T ss_pred EEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHH---------hhcccHHH
Confidence 6799999999985 35899999999998754 258999999998775432 222 23445667
Q ss_pred HHHhcCCCCC-CcchHHHHHHHHHHHHhccc-C-----CCCC----CCceEEEEEeCCCCCcHH-----H----------
Q psy17515 283 AALANVKGDN-VANFTGALATAFEILHKYNR-T-----NQGC----QCNQAIMLVSSGPPSAFK-----E---------- 336 (1061)
Q Consensus 283 ~~I~~l~~~G-~Tnl~~AL~~A~~~L~~~~~-~-----~~~~----~~~~~IvLlTDG~~~~~~-----~---------- 336 (1061)
+.|.++.+.+ .+-...+..+||++|.-.+- + +++. ....+||+||||.--.+. +
T Consensus 75 ~eik~l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~p 154 (888)
T KOG3768|consen 75 EEIKKLHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFP 154 (888)
T ss_pred HHHHhhcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEeccCCCCC
Confidence 7788887665 55677788889999975431 1 1111 134689999999443221 1
Q ss_pred ----HHHhhCCCCCCeeEEEEEec--------------CCchhhhhhhhhccCCccceeeecccccc
Q psy17515 337 ----VFKHYNWPHMPVRLFSYLIG--------------KSSNYAEMKQMACSNKGYFEFIKNTDRLR 385 (1061)
Q Consensus 337 ----i~~~~n~~~~~VrIfTigIG--------------~~~d~~~L~~IA~~ngG~y~~I~~~~dv~ 385 (1061)
.-+.++|.+ |+||+-+- -+.|...++.|...+||.-+.+-++..+.
T Consensus 155 Gse~TkepFRWDQ---rlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~Spr~ln 218 (888)
T KOG3768|consen 155 GSEMTKEPFRWDQ---RLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVVSPRQLN 218 (888)
T ss_pred ccccccccchhhh---hhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeeeeCHHHHH
Confidence 111233422 34554442 11344568888889999876666554443
No 67
>KOG2353|consensus
Probab=97.28 E-value=0.00017 Score=92.47 Aligned_cols=169 Identities=25% Similarity=0.263 Sum_probs=106.0
Q ss_pred hhh-eeeeeeecccCCCCCCChHHHHHHHHH-hccCCCCcccccCC--CC----CCCCCchHHHHHHhhhheeeccCCcc
Q psy17515 793 LLK-VRVYCEYNYADDHNFQSPEEQVLHFLA-RSIQPGWKWMSLRP--RS----PQENSSDKSLVQSLVFDAMVTEAPVY 864 (1061)
Q Consensus 793 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~w~~~~~--~~----~~~~~cd~~l~q~l~~da~~t~~~~~ 864 (1061)
-+| .|.||.+ |.|.+||+++.+++. -...|.+.|...+. .. +..-+||+.|+|.|+|||.+|...-.
T Consensus 622 ~lhp~~~~~~~-----~~~~~~e~~l~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~li~~a~~t~~~~~ 696 (1104)
T KOG2353|consen 622 KLHPDWRYCEG-----HTFGTPEAKLQNYLKQSGSDPTLQWDKDQLNEGMLKDVPDAYFCNAYLAQLLIFDARVTNELVG 696 (1104)
T ss_pred eeccccccccc-----ccccchHHHHHhhhhhccCCCcccchhHHHhhccccccccchHHHHHHHHHHHhhhhhhhcccc
Confidence 444 8999984 899999999999883 16678877753322 11 22235999999999999999874210
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCcchhhhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17515 865 SDYDQNYDTDQSFPESDMDGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNETPPPPTITSTSPPTKTTKTSPPRLHA 944 (1061)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1061)
.++ + ..+++ +..+.+...|+++++|++||+.+.....-+.++.-+ ...- -|+-. ..
T Consensus 697 ------~~~---~-~~~~~---~~~~~~~~~fv~t~~gltr~~~~~~~~~h~~~~f~~-d~~~--~~~~y--------kr 752 (1104)
T KOG2353|consen 697 ------NAT---F-SSDEE---KNGYLVAHPFVATYSGLTRWQVFLKSAEHKEEHFNT-DHFR--DPTWY--------KR 752 (1104)
T ss_pred ------cee---c-cchhh---hcCeeeeeeeeecccccccccccccccccccccccc-cccC--CchHH--------HH
Confidence 011 1 11111 334789999999999999999877765544332111 0000 01000 14
Q ss_pred CCccceeeeeeecCCc-------cccCCC-CCCCeeeeecCCCceEEEEEecCCC
Q psy17515 945 RTCQKRADLFILQPGR-------LNNSGL-FNPPFSVQKIPHSNLILLVVDTLCP 991 (1061)
Q Consensus 945 ~~Cd~~~~~y~~~~~~-------~~~~~~-c~r~f~~~~i~~sNL~lvvv~~~c~ 991 (1061)
..|+.-.+ |++.-.. ..+|.. |.=-++...|+.+|+..-||...|.
T Consensus 753 ~~~~~~~~-fv~~v~f~~~~~~~~n~~~~v~~s~~v~~~~~g~na~~AVvg~q~~ 806 (1104)
T KOG2353|consen 753 ASLQHHGD-FVYSVPFNDGLMDILNNVVGVEASTAVEALIRGKNAFAAVVGVQCD 806 (1104)
T ss_pred hhhccccc-EEEeeecCCChHHHhcCccceeehhhhHhhccCcccceeeEeeecc
Confidence 56777665 4443322 344543 4445666779999999999986543
No 68
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=97.19 E-value=0.0018 Score=75.67 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=83.8
Q ss_pred CccccccCccceeeccCCCceEE-EEEccCCCCCcchHHHHHHHHHHHHHHcCC-CCEEEE--EEEcCceeeeecccccc
Q psy17515 194 QDLHDFRSSAWFVEAATSPKDIV-ILLDASSTLSTKHRNLARATINVILDTLGS-NDFVNI--FTFSDVTVELVPCYREM 269 (1061)
Q Consensus 194 ~~~yD~R~R~Wyi~aa~~pkdVV-ILlD~SGSM~g~~l~~aK~a~~~iLdtL~~-~D~v~V--v~Fs~~~~~~~~c~~~~ 269 (1061)
++-.|.|.|.|-..-.+...-|| +++|+||||...+..+||...--|..=|.. =+.|-| |...+.+..+.
T Consensus 227 i~~~DlRyr~~~~~~~p~s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~EVd------ 300 (421)
T PF04285_consen 227 IDPEDLRYRRWEEVPKPESNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAKEVD------ 300 (421)
T ss_pred CCccccccccCccccCCcCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceEEec------
Confidence 56689999999877666555555 689999999999999999988777655542 233444 44445544431
Q ss_pred ccccCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc
Q psy17515 270 LVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA 333 (1061)
Q Consensus 270 lv~at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~ 333 (1061)
- +..=....+|||-+..|++.|.+++.+.... +.-|-...-+|||..-.
T Consensus 301 --------E----e~FF~~~esGGT~vSSA~~l~~~ii~erypp---~~wNiY~~~~SDGDN~~ 349 (421)
T PF04285_consen 301 --------E----EEFFHSRESGGTRVSSAYELALEIIEERYPP---SDWNIYVFHASDGDNWS 349 (421)
T ss_pred --------H----HHhcccCCCCCeEehHHHHHHHHHHHhhCCh---hhceeeeEEcccCcccc
Confidence 0 1111234679999999999999999974332 23677888899998864
No 69
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=97.14 E-value=0.0021 Score=69.61 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=78.3
Q ss_pred EEEEEccCCCCCc------chHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeee---eccccc-----cccccCHHh
Q psy17515 215 IVILLDASSTLST------KHRNLARATINVILDTL---GSNDFVNIFTFSDVTVEL---VPCYRE-----MLVQATDEN 277 (1061)
Q Consensus 215 VVILlD~SGSM~g------~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~---~~c~~~-----~lv~at~~n 277 (1061)
++||||+|.||.. ..++.|.+++..++... ++.|.||||.|+.+...- ...|++ .+-+++...
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~~ 81 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAER 81 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHHH
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHHH
Confidence 7899999999972 26889999998887764 577999999999765532 222321 233333334
Q ss_pred HHHHHHHHhc-------CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc-----HHHHHHh--hC-
Q psy17515 278 KRTLKAALAN-------VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA-----FKEVFKH--YN- 342 (1061)
Q Consensus 278 ~~~lk~~I~~-------l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~-----~~~i~~~--~n- 342 (1061)
++.+.+.+.. .......++..||..|..+|.+.... .....+.|+|+||+..-. ...++++ ..
T Consensus 82 l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~--~k~~~krI~l~Td~d~p~~~~~~~~~~~~~l~~~D 159 (224)
T PF03731_consen 82 LKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCK--KKKNKKRIFLFTDNDGPHEDDDELERIIQKLKAKD 159 (224)
T ss_dssp HHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTT--S-ECEEEEEEEES-SSTTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhc--ccCCCcEEEEEeCCCCCCCCHHHHHHHHHhhcccc
Confidence 4444433332 11234578999999999999862111 123567999999876654 2234333 11
Q ss_pred CCCCCeeEEEEEe
Q psy17515 343 WPHMPVRLFSYLI 355 (1061)
Q Consensus 343 ~~~~~VrIfTigI 355 (1061)
....+|.+-.+.|
T Consensus 160 l~~~~i~~~~~~l 172 (224)
T PF03731_consen 160 LQDNGIEIELFFL 172 (224)
T ss_dssp HHHHTEEEEEEEC
T ss_pred chhcCcceeEeec
Confidence 1244577777777
No 70
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=97.06 E-value=0.0024 Score=76.63 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=78.9
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCE-EEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDF-VNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~-v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
+-.+.+.|.|+||||.|.+++.|..-. -++..+..+-+ =.+|+|+++++. +..+..++.+-.+.+..+.
T Consensus 339 ~l~n~iav~DvSGSM~~~pm~vaiaLg-ll~ae~~~~pf~~~~ITFs~~P~~---------~~i~g~~l~ekv~~~~~~~ 408 (534)
T PF11443_consen 339 SLENCIAVCDVSGSMSGPPMDVAIALG-LLIAELNKGPFKGRFITFSENPQL---------HKIKGDTLREKVRFIRRMD 408 (534)
T ss_pred CccceEEEEecCCccCccHHHHHHHHH-HHHHHhcccccCCeEEeecCCceE---------EEecCCCHHHHHHHHHhCC
Confidence 347999999999999999888887544 44555565544 458999999653 3334446666677777777
Q ss_pred CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 290 GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 290 ~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
-++.||+.++|...++...+.+-. ...-.+.|++|||=+.+
T Consensus 409 wg~nTn~~aVFdlIL~~Av~~~l~--~e~M~k~lfV~SDMeFD 449 (534)
T PF11443_consen 409 WGMNTNFQAVFDLILETAVKNKLK--QEDMPKRLFVFSDMEFD 449 (534)
T ss_pred cccCCcHHHHHHHHHHHHHHcCCC--hHHCCceEEEEeccccc
Confidence 788999999998877776554322 22356789999986655
No 71
>PRK05325 hypothetical protein; Provisional
Probab=97.02 E-value=0.0032 Score=73.11 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=83.4
Q ss_pred CccccccCccceeeccCCCceEE-EEEccCCCCCcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcCc--eeeeecccccc
Q psy17515 194 QDLHDFRSSAWFVEAATSPKDIV-ILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSDV--TVELVPCYREM 269 (1061)
Q Consensus 194 ~~~yD~R~R~Wyi~aa~~pkdVV-ILlD~SGSM~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~--~~~~~~c~~~~ 269 (1061)
++.+|.|.|.|-....+...-|| +|+|+||||.+.+..+||...--|-.=|. .=++|-|+--.++ +..+.
T Consensus 203 ~d~~DlRYr~~~~~~~p~s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~AkEVd------ 276 (401)
T PRK05325 203 IDPFDLRYRNWEKVPKPESQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAKEVD------ 276 (401)
T ss_pred CCcccccccccccccCccCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceeEcC------
Confidence 45579999999887776666655 68999999999999999998766644443 2355555544433 33321
Q ss_pred ccccCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc
Q psy17515 270 LVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA 333 (1061)
Q Consensus 270 lv~at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~ 333 (1061)
. + ..=....+|||-+..|++.|.+++++.... +.-|-...-.|||..-.
T Consensus 277 -----E---e----eFF~~~esGGT~vSSA~~l~~eIi~~rYpp---~~wNIY~f~aSDGDNw~ 325 (401)
T PRK05325 277 -----E---E----EFFYSRESGGTIVSSAYKLALEIIEERYPP---AEWNIYAFQASDGDNWS 325 (401)
T ss_pred -----H---H----HccccCCCCCeEehHHHHHHHHHHHhhCCH---hHCeeEEEEcccCCCcC
Confidence 0 1 111234679999999999999999975432 23677888899998864
No 72
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=96.88 E-value=0.0042 Score=70.97 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=83.7
Q ss_pred CCccccccCccceeeccCCCceEE-EEEccCCCCCcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcCc--eeeeeccccc
Q psy17515 193 PQDLHDFRSSAWFVEAATSPKDIV-ILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSDV--TVELVPCYRE 268 (1061)
Q Consensus 193 ~~~~yD~R~R~Wyi~aa~~pkdVV-ILlD~SGSM~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~--~~~~~~c~~~ 268 (1061)
.++-.|.|.|.|-....+..+.|| .|+|+||||...+..+||...--|-.=|. .=.+|-|+--.+. ++.+
T Consensus 182 Pi~~~DlRYr~~~~~~~P~s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~AkEV------ 255 (371)
T TIGR02877 182 PITKEDLRYKTWKENEKPESNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAKEV------ 255 (371)
T ss_pred CCCcccccccccccccCccCcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeEEc------
Confidence 356689999999887776555555 68999999999999999998776644444 2345555554443 3322
Q ss_pred cccccCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc
Q psy17515 269 MLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA 333 (1061)
Q Consensus 269 ~lv~at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~ 333 (1061)
+ -++ .=....+|||-+..|++.|.+++++.... +.-|-...-+|||..-.
T Consensus 256 -----d---Eee----FF~~~EsGGT~vSSA~~l~~eII~~rYpp---~~wNIY~f~aSDGDNw~ 305 (371)
T TIGR02877 256 -----T---EEE----FFHKGESGGTYCSSGYKKALEIIDERYNP---ARYNIYAFHFSDGDNLT 305 (371)
T ss_pred -----C---HHH----hcccCCCCCeEehHHHHHHHHHHHhhCCh---hhCeeEEEEcccCCCcc
Confidence 1 011 11234679999999999999999975432 23677778899998864
No 73
>KOG2807|consensus
Probab=96.87 E-value=0.0043 Score=68.35 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=106.2
Q ss_pred CceEEEEEccCCCCCc-----chHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHH
Q psy17515 212 PKDIVILLDASSTLST-----KHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKA 283 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g-----~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~ 283 (1061)
=++++|+||.|.+|.. .++....+.+..++..+= |=.+++||.--+.... .+++. ..|.+.-..
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~-------~lt~l-tgnp~~hI~ 131 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKAD-------RLTDL-TGNPRIHIH 131 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhh-------HHHHh-cCCHHHHHH
Confidence 4789999999999975 467777777777777653 4458898887655321 23322 246666666
Q ss_pred HHhcCC-CCCCcchHHHHHHHHHHHHhcccCCCCCCCce-EEEEEeC---CCCCcHHHHHHhhCCCCCCeeEEEEEecCC
Q psy17515 284 ALANVK-GDNVANFTGALATAFEILHKYNRTNQGCQCNQ-AIMLVSS---GPPSAFKEVFKHYNWPHMPVRLFSYLIGKS 358 (1061)
Q Consensus 284 ~I~~l~-~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~-~IvLlTD---G~~~~~~~i~~~~n~~~~~VrIfTigIG~~ 358 (1061)
++..+. ..|.-.+..||+.|.+.|+....- +.+ ++|+++- -.|.+.-+.+++.. ..+||+..||+..
T Consensus 132 aL~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H-----~sREVLii~sslsT~DPgdi~~tI~~lk--~~kIRvsvIgLsa- 203 (378)
T KOG2807|consen 132 ALKGLTECSGDFSLQNALELAREVLKHMPGH-----VSREVLIIFSSLSTCDPGDIYETIDKLK--AYKIRVSVIGLSA- 203 (378)
T ss_pred HHhcccccCCChHHHHHHHHHHHHhcCCCcc-----cceEEEEEEeeecccCcccHHHHHHHHH--hhCeEEEEEeech-
Confidence 777665 788889999999999999876321 212 3344332 33334444555444 4568998888874
Q ss_pred chhhhhhhhhccCCccceeeeccccccc
Q psy17515 359 SNYAEMKQMACSNKGYFEFIKNTDRLRM 386 (1061)
Q Consensus 359 ~d~~~L~~IA~~ngG~y~~I~~~~dv~e 386 (1061)
....-+.|+.+++|.|..+-+...+.+
T Consensus 204 -Ev~icK~l~kaT~G~Y~V~lDe~Hlke 230 (378)
T KOG2807|consen 204 -EVFICKELCKATGGRYSVALDEGHLKE 230 (378)
T ss_pred -hHHHHHHHHHhhCCeEEEEeCHHHHHH
Confidence 445668899999999988776555443
No 74
>PLN00162 transport protein sec23; Provisional
Probab=96.85 E-value=0.022 Score=72.45 Aligned_cols=169 Identities=19% Similarity=0.197 Sum_probs=109.3
Q ss_pred eeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeec----c-----ccc-------
Q psy17515 205 FVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVP----C-----YRE------- 268 (1061)
Q Consensus 205 yi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~----c-----~~~------- 268 (1061)
|....+.|--++||||+| +....++..|.++...|+.|+++.+||+|+|++.++...- | |++
T Consensus 117 ~~~~~~~pp~fvFvID~s--~~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~ 194 (761)
T PLN00162 117 GSGGAPSPPVFVFVVDTC--MIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKD 194 (761)
T ss_pred CCCCCCCCcEEEEEEecc--hhHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHH
Confidence 333445678999999998 5667899999999999999999999999999998864210 1 100
Q ss_pred ---------------------------------cccccCHHhHHHHHHHHhcCCC------CC---CcchHHHHHHHHHH
Q psy17515 269 ---------------------------------MLVQATDENKRTLKAALANVKG------DN---VANFTGALATAFEI 306 (1061)
Q Consensus 269 ---------------------------------~lv~at~~n~~~lk~~I~~l~~------~G---~Tnl~~AL~~A~~~ 306 (1061)
.+...-.+....+...|+.|.. .| ...++.||..|..+
T Consensus 195 ~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~l 274 (761)
T PLN00162 195 QILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGL 274 (761)
T ss_pred HHHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHH
Confidence 0110111223445556666532 22 46799999999999
Q ss_pred HHhcccCCCCCCCceEEEEEeCCCCCcHHH---------H------HH------------hhC-----CCCCCeeEEEEE
Q psy17515 307 LHKYNRTNQGCQCNQAIMLVSSGPPSAFKE---------V------FK------------HYN-----WPHMPVRLFSYL 354 (1061)
Q Consensus 307 L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~---------i------~~------------~~n-----~~~~~VrIfTig 354 (1061)
|+.... +..-.||+++-|.++.+.- . +. -|+ ....++.|-.|.
T Consensus 275 L~~~~~-----~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~ 349 (761)
T PLN00162 275 LGACVP-----GTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFA 349 (761)
T ss_pred HhhccC-----CCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEE
Confidence 985421 1223677777787763210 0 00 000 013456666666
Q ss_pred ecCC-chhhhhhhhhccCCccceeeec
Q psy17515 355 IGKS-SNYAEMKQMACSNKGYFEFIKN 380 (1061)
Q Consensus 355 IG~~-~d~~~L~~IA~~ngG~y~~I~~ 380 (1061)
.+.+ .+..+|+.++..+||....-++
T Consensus 350 ~s~dqvglaem~~l~~~TGG~v~~~~s 376 (761)
T PLN00162 350 CSLDQVGVAEMKVAVERTGGLVVLAES 376 (761)
T ss_pred ccccccCHHHHhhhHhhcCcEEEEeCC
Confidence 6666 9999999999999997655443
No 75
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=96.68 E-value=0.016 Score=58.74 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHHHcCCCCEEEEEEEcCcee---eeecccccccccc------CHHhHHHHHHHHhcCCCCCCcchHH
Q psy17515 228 KHRNLARATINVILDTLGSNDFVNIFTFSDVTV---ELVPCYREMLVQA------TDENKRTLKAALANVKGDNVANFTG 298 (1061)
Q Consensus 228 ~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~---~~~~c~~~~lv~a------t~~n~~~lk~~I~~l~~~G~Tnl~~ 298 (1061)
+..+.|..++-.+|.....+-.|-+..|+.... .+-.||.=..-.. -..=++.-++.+.+++..|.|++..
T Consensus 11 N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fap 90 (146)
T PF07002_consen 11 NPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFAP 90 (146)
T ss_pred CHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHHH
Confidence 567899999999999999999999999998643 2334554111111 1123556667777888899999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhC-CCCCCeeEEEEEec
Q psy17515 299 ALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYN-WPHMPVRLFSYLIG 356 (1061)
Q Consensus 299 AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n-~~~~~VrIfTigIG 356 (1061)
-++.|.+..++.. +....-.++++||||..++.++..+... .+..++.|..+|||
T Consensus 91 iI~~a~~~a~~~~---~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 91 IINHAAKIAKQSN---QNGQQYFILLILTDGQITDMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred HHHHHHHHHhhhc---cCCceEEEEEEecccccccHHHHHHHHHHHccCCeEEEEEEeC
Confidence 9999999887621 1233556999999999998876444332 24678999999988
No 76
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=96.65 E-value=0.019 Score=60.93 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=93.3
Q ss_pred ceEEEEEccCCCCCcchHHHHHHHHHHHH------HHcC----CCCEEEEEEEcCc--eeeeeccccccccccCHHhHHH
Q psy17515 213 KDIVILLDASSTLSTKHRNLARATINVIL------DTLG----SNDFVNIFTFSDV--TVELVPCYREMLVQATDENKRT 280 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~~l~~aK~a~~~iL------dtL~----~~D~v~Vv~Fs~~--~~~~~~c~~~~lv~at~~n~~~ 280 (1061)
..+|+.||+||||....+.+-++.....| +.+. ..-.|+++.+++. ...++| |. .-.++...+.
T Consensus 4 laLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~-Wt---~i~~~~da~a 79 (205)
T PF06707_consen 4 LALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVP-WT---RIDSPADAEA 79 (205)
T ss_pred ceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeC-CE---EeCCHHHHHH
Confidence 46889999999999877666666554443 2332 2346788888873 333444 33 3346677888
Q ss_pred HHHHHhcCC--CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH----HHHhhCCCCCCeeEEEEE
Q psy17515 281 LKAALANVK--GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE----VFKHYNWPHMPVRLFSYL 354 (1061)
Q Consensus 281 lk~~I~~l~--~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~----i~~~~n~~~~~VrIfTig 354 (1061)
+-..|.... ..+.|.++.||..|..+|.+.... ...++|=+-.||..+.+.. .-... ...+|.|..+.
T Consensus 80 ~A~~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~----~~RrVIDvSGDG~~N~G~~p~~~ard~~--~~~GitINgL~ 153 (205)
T PF06707_consen 80 FAARLRAAPRRFGGRTAIGSALDFAAALLAQNPFE----CWRRVIDVSGDGPNNQGPRPVTSARDAA--VAAGITINGLA 153 (205)
T ss_pred HHHHHHhCCCCCCCCchHHHHHHHHHHHHHhCCCC----CceEEEEECCCCCCCCCCCccHHHHHHH--HHCCeEEeeeE
Confidence 888888873 456799999999999999975321 2345777888999987622 11111 24589999999
Q ss_pred ecCC
Q psy17515 355 IGKS 358 (1061)
Q Consensus 355 IG~~ 358 (1061)
|+..
T Consensus 154 I~~~ 157 (205)
T PF06707_consen 154 ILDD 157 (205)
T ss_pred ecCC
Confidence 9976
No 77
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0027 Score=74.24 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=91.1
Q ss_pred ceEEEEEccCCCCCcc------hHHHHHHHHHHHHHHcC-CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH
Q psy17515 213 KDIVILLDASSTLSTK------HRNLARATINVILDTLG-SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL 285 (1061)
Q Consensus 213 kdVVILlD~SGSM~g~------~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I 285 (1061)
.-+.||+|+|-||... -+.+-++|++.+-..+. -+|...+..|.+..+.++- |+ .+..-...--....-.|
T Consensus 447 la~TLLvD~S~St~a~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vr-i~-tvk~FDes~~~~~~~RI 524 (637)
T COG4548 447 LAFTLLVDVSASTDAKMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVR-IN-TVKDFDESMGETVGPRI 524 (637)
T ss_pred ceeEEEeecccchHHHhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCccee-ee-eeeccccccccccchhh
Confidence 3456899999999741 24566666665543333 3677888888887665221 11 12222222234556678
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH------------H-HHHhhCCCCCCeeEEE
Q psy17515 286 ANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK------------E-VFKHYNWPHMPVRLFS 352 (1061)
Q Consensus 286 ~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~------------~-i~~~~n~~~~~VrIfT 352 (1061)
..|+|+-.|.++.|+..|-+.|.... +..+.+|++|||.|++.. + +++ . ...+|.||.
T Consensus 525 mALePg~ytR~G~AIR~As~kL~~rp------q~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~e-a--Rk~Gi~VF~ 595 (637)
T COG4548 525 MALEPGYYTRDGAAIRHASAKLMERP------QRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIE-A--RKSGIEVFN 595 (637)
T ss_pred eecCccccccccHHHHHHHHHHhcCc------ccceEEEEecCCCcccccccccccchhhHHHHHHH-H--HhcCceEEE
Confidence 88999999999999999998887643 467799999999999532 1 222 1 356899999
Q ss_pred EEecCC
Q psy17515 353 YLIGKS 358 (1061)
Q Consensus 353 igIG~~ 358 (1061)
+-+..+
T Consensus 596 Vtld~e 601 (637)
T COG4548 596 VTLDRE 601 (637)
T ss_pred EEecch
Confidence 999877
No 78
>KOG1327|consensus
Probab=96.40 E-value=0.032 Score=66.43 Aligned_cols=155 Identities=12% Similarity=0.185 Sum_probs=111.8
Q ss_pred CCceEEEEEccCCCCC---------------cchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceee---eeccccccccc
Q psy17515 211 SPKDIVILLDASSTLS---------------TKHRNLARATINVILDTLGSNDFVNIFTFSDVTVE---LVPCYREMLVQ 272 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~---------------g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~---~~~c~~~~lv~ 272 (1061)
...+..+-||-+.|-. -+..+.|..++-.+|....++-+|-...|+..... +.-||.=.+.+
T Consensus 284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~ 363 (529)
T KOG1327|consen 284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP 363 (529)
T ss_pred ceeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCC
Confidence 4578899999999832 23678899999999999999999999999988322 22222211222
Q ss_pred cCH------HhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhC-CCC
Q psy17515 273 ATD------ENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYN-WPH 345 (1061)
Q Consensus 273 at~------~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n-~~~ 345 (1061)
.++ .-.+.-++.+-+++..|.|++..-+..|.+..++... ....--++++||||..++..+..+... ..+
T Consensus 364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~---~~~qY~VLlIitDG~vTdm~~T~~AIV~AS~ 440 (529)
T KOG1327|consen 364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGN---TAGQYHVLLIITDGVVTDMKETRDAIVSASD 440 (529)
T ss_pred CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhcc---CCcceEEEEEEeCCccccHHHHHHHHHhhcc
Confidence 222 2355666677788899999999999999998877643 223556999999999999876554433 357
Q ss_pred CCeeEEEEEecCCchhhhhhhhhc
Q psy17515 346 MPVRLFSYLIGKSSNYAEMKQMAC 369 (1061)
Q Consensus 346 ~~VrIfTigIG~~~d~~~L~~IA~ 369 (1061)
.+..|..+|+| +.+.+.|+.+-.
T Consensus 441 lPlSIIiVGVG-d~df~~M~~lD~ 463 (529)
T KOG1327|consen 441 LPLSIIIVGVG-DADFDMMRELDG 463 (529)
T ss_pred CCeEEEEEEeC-CCCHHHHHHhhc
Confidence 78899999999 567777776643
No 79
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.02 Score=64.92 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=79.7
Q ss_pred CCccccccCccceeeccCCCceEE-EEEccCCCCCcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcC--ceeeeeccccc
Q psy17515 193 PQDLHDFRSSAWFVEAATSPKDIV-ILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSD--VTVELVPCYRE 268 (1061)
Q Consensus 193 ~~~~yD~R~R~Wyi~aa~~pkdVV-ILlD~SGSM~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~--~~~~~~~c~~~ 268 (1061)
-++ +|.|++.|-....+..+-|| -|+|+||||......+||...--|--=|. .=+.|-|+--.+ .+..+..
T Consensus 227 f~d-~DlRf~~~~~~p~pes~AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~EVdE---- 301 (423)
T COG2718 227 FID-EDLRYKRYEKVPKPESNAVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAKEVDE---- 301 (423)
T ss_pred ccc-cchhccCCccccCCccceEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCcceecch----
Confidence 455 89999999887776556555 47999999999999999987654432333 334455554443 3333210
Q ss_pred cccccCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH
Q psy17515 269 MLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF 334 (1061)
Q Consensus 269 ~lv~at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~ 334 (1061)
..+ =..+.+|||-+..||+.+.+++++.... ..-|....-.+||..-..
T Consensus 302 ----------~dF----F~~~esGGTivSSAl~~m~evi~ErYp~---aeWNIY~fqaSDGDN~~d 350 (423)
T COG2718 302 ----------TDF----FYSQESGGTIVSSALKLMLEVIKERYPP---AEWNIYAFQASDGDNWAD 350 (423)
T ss_pred ----------hhc----eeecCCCCeEeHHHHHHHHHHHHhhCCh---hheeeeeeeecCCccccC
Confidence 000 0124579999999999999999984332 235556667899987643
No 80
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=96.30 E-value=0.0084 Score=68.79 Aligned_cols=139 Identities=18% Similarity=0.238 Sum_probs=84.7
Q ss_pred EEEEEccCCCCCcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcCceeeeecc---ccccccccCHHhHHHHHHHHhc---
Q psy17515 215 IVILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSDVTVELVPC---YREMLVQATDENKRTLKAALAN--- 287 (1061)
Q Consensus 215 VVILlD~SGSM~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~~~~~~~c---~~~~lv~at~~n~~~lk~~I~~--- 287 (1061)
|-+|||.||||.|.++.+|-..+-.|-++|. -+-.+-|+.|.+.+-.=.+. |-..=.++.+.-...+...|..
T Consensus 416 VtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhiiyksAd 495 (620)
T COG4547 416 VTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHIIYKSAD 495 (620)
T ss_pred heeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHHHhccC
Confidence 4589999999999999999999999999996 67888888888753100000 0001112222222222222211
Q ss_pred ------------CCCCC--Ccch-HHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH---------------HHH
Q psy17515 288 ------------VKGDN--VANF-TGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF---------------KEV 337 (1061)
Q Consensus 288 ------------l~~~G--~Tnl-~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~---------------~~i 337 (1061)
+-..| --|+ +.||-.|-+.|-... ...+++|+|+||.|-+. ..+
T Consensus 496 aPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRp------EqrkIlmmiSDGAPvddstlsvnpGnylerHLRaV 569 (620)
T COG4547 496 APWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRP------EQRKILMMISDGAPVDDSTLSVNPGNYLERHLRAV 569 (620)
T ss_pred CHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcCh------hhceEEEEecCCCcccccccccCCchHHHHHHHHH
Confidence 11111 0122 356666666665432 24569999999998642 125
Q ss_pred HHhhCCCCCCeeEEEEEecCCch
Q psy17515 338 FKHYNWPHMPVRLFSYLIGKSSN 360 (1061)
Q Consensus 338 ~~~~n~~~~~VrIfTigIG~~~d 360 (1061)
++++. ...+|-+.+||||.++.
T Consensus 570 ieeIE-trSpveLlAIGighDvt 591 (620)
T COG4547 570 IEEIE-TRSPVELLAIGIGHDVT 591 (620)
T ss_pred HHHHh-cCCchhheeeecccccc
Confidence 55554 45689999999998743
No 81
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=95.90 E-value=0.075 Score=57.31 Aligned_cols=118 Identities=18% Similarity=0.356 Sum_probs=83.5
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCC-------------CCEEEEEEEcCceeeeeccccccccccC--
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLGS-------------NDFVNIFTFSDVTVELVPCYREMLVQAT-- 274 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~-------------~D~v~Vv~Fs~~~~~~~~c~~~~lv~at-- 274 (1061)
..-++||||||.+..|+..=-.+-.+-+.-+++.|.. +-.++||.|++. +|+.+.+++-.
T Consensus 11 ~~~~~vVfvvEgTAalgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~-----d~~~~~~v~~~g~ 85 (226)
T PF11265_consen 11 PPQAQVVFVVEGTAALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTA-----DCYPEPIVQRSGP 85 (226)
T ss_pred CccceEEEEEecchhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEecc-----CCCcccceeccCC
Confidence 4679999999999999865445555566666665542 245899999876 45555555443
Q ss_pred HHhHHHHHHHHhcCCCCC-C----cchHHHHHHHHHHHHhcccCCC---CCCCceEEEEEeCCCCC
Q psy17515 275 DENKRTLKAALANVKGDN-V----ANFTGALATAFEILHKYNRTNQ---GCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 275 ~~n~~~lk~~I~~l~~~G-~----Tnl~~AL~~A~~~L~~~~~~~~---~~~~~~~IvLlTDG~~~ 332 (1061)
..+...+.++|++++..| | +.+.+||..|+.++......++ .....+..||++--.|.
T Consensus 86 T~~~~~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~ 151 (226)
T PF11265_consen 86 TSSPQKFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPY 151 (226)
T ss_pred cCCHHHHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCc
Confidence 257889999999997443 2 5689999999999986543321 12356888999987665
No 82
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=95.82 E-value=0.019 Score=51.77 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=54.7
Q ss_pred eccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCCCCCCCCCCCCCcceeEecCCce
Q psy17515 658 SVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGPGCKKTCASDDLDCYVLDNNGF 737 (1061)
Q Consensus 658 s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~~~c~~~C~~~~~~CyliD~~G~ 737 (1061)
|-||.+.. ....+||+|++|+-.+ ....+|+|+.+.++.+.+.+.++.. ...-.+||+|++|.
T Consensus 2 s~py~~~~-~~~~vi~~s~pi~~~~---g~~~Gvv~~di~l~~l~~~i~~~~~-------------~~~g~~~ivd~~G~ 64 (81)
T PF02743_consen 2 SEPYVDAA-TGQPVITISVPIYDDD---GKIIGVVGIDISLDQLSEIISNIKF-------------GNNGYAFIVDKNGT 64 (81)
T ss_dssp ---EEETT-TTEEEEEEEEEEEETT---TEEEEEEEEEEEHHHHHHHHTTSBB-------------TTTBEEEEEETTSB
T ss_pred CcCEEeCC-CCcEEEEEEEEEECCC---CCEEEEEEEEeccceeeeEEEeeEE-------------CCCEEEEEEECCCC
Confidence 34565543 3467999999999732 3458999999999999998877641 23457999999999
Q ss_pred EEeccccccccc
Q psy17515 738 IILSEKYEQTGL 749 (1061)
Q Consensus 738 iv~S~~~~~~G~ 749 (1061)
+|++.+.+.+++
T Consensus 65 ii~hp~~~~i~~ 76 (81)
T PF02743_consen 65 IIAHPDKDLINK 76 (81)
T ss_dssp BCE-SSGGCTTS
T ss_pred EEEeCChHHhcc
Confidence 999998876654
No 83
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=95.59 E-value=0.063 Score=62.67 Aligned_cols=126 Identities=12% Similarity=0.135 Sum_probs=77.2
Q ss_pred eeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHH---HHHcCCCCEEEEEEEcCceee----------eeccccc---
Q psy17515 205 FVEAATSPKDIVILLDASSTLSTKHRNLARATINVI---LDTLGSNDFVNIFTFSDVTVE----------LVPCYRE--- 268 (1061)
Q Consensus 205 yi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~i---LdtL~~~D~v~Vv~Fs~~~~~----------~~~c~~~--- 268 (1061)
|.++...|.|+.+|+|.|+||.. .++..|.....| |..+..+-++|+-+|-+.+.. .-||...
T Consensus 92 ~~~a~~yPvDLYyLMDlS~SM~d-dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~ 170 (423)
T smart00187 92 VRQAEDYPVDLYYLMDLSYSMKD-DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLT 170 (423)
T ss_pred EEecccCccceEEEEeCCccHHH-HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCC
Confidence 45566789999999999999985 444445554555 445668889999888876431 1244210
Q ss_pred --------cccccCHHhHHHHHHHHhcCCCCCCcchHH-HHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 269 --------MLVQATDENKRTLKAALANVKGDNVANFTG-ALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 269 --------~lv~at~~n~~~lk~~I~~l~~~G~Tnl~~-AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
+... -..|...+.+.|.....+|+-+.-+ ||..-++..-=...-+=+.+..+.+|+.||+...
T Consensus 171 c~p~f~f~~~L~-LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH 242 (423)
T smart00187 171 CEPPYGFKHVLS-LTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFH 242 (423)
T ss_pred cCCCcceeeecc-CCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCCcc
Confidence 1222 2357889999999988776554332 2322222221001111123467899999998776
No 84
>KOG2884|consensus
Probab=95.39 E-value=0.2 Score=52.81 Aligned_cols=134 Identities=17% Similarity=0.230 Sum_probs=93.8
Q ss_pred CceEEEEEccCCCCCc-----chHHHHHHHHHHHHHH-c--CCCCEEEEEEEcC-ceeeeeccccccccccCHHhHHHHH
Q psy17515 212 PKDIVILLDASSTLST-----KHRNLARATINVILDT-L--GSNDFVNIFTFSD-VTVELVPCYREMLVQATDENKRTLK 282 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g-----~~l~~aK~a~~~iLdt-L--~~~D~v~Vv~Fs~-~~~~~~~c~~~~lv~at~~n~~~lk 282 (1061)
+-..+|+||.|--|.. .|+..-|+++..+... + .+.-.|+|++..+ .++.+. ........+.
T Consensus 3 lEatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLs---------T~T~d~gkil 73 (259)
T KOG2884|consen 3 LEATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLS---------TLTSDRGKIL 73 (259)
T ss_pred cceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeee---------eccccchHHH
Confidence 3457899999999963 5899999999988764 3 3567899999988 444321 1123457788
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC-cHHHHHHh-hCCCCCCeeEEEEEecCC
Q psy17515 283 AALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS-AFKEVFKH-YNWPHMPVRLFSYLIGKS 358 (1061)
Q Consensus 283 ~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~-~~~~i~~~-~n~~~~~VrIfTigIG~~ 358 (1061)
..+..+.+.|..++..||+-|.-.|+..... +..+.||++--.... ...+.+.. +.....+|.|-.+-||..
T Consensus 74 s~lh~i~~~g~~~~~~~i~iA~lalkhRqnk----~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~ 147 (259)
T KOG2884|consen 74 SKLHGIQPHGKANFMTGIQIAQLALKHRQNK----NQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEA 147 (259)
T ss_pred HHhcCCCcCCcccHHHHHHHHHHHHHhhcCC----CcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEeccc
Confidence 9999999999999999999998888875433 333445444433222 33333332 222466899999999987
No 85
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.20 E-value=0.038 Score=62.66 Aligned_cols=112 Identities=17% Similarity=0.220 Sum_probs=60.9
Q ss_pred eeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHH
Q psy17515 206 VEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAA 284 (1061)
Q Consensus 206 i~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~ 284 (1061)
.+.-..+..+|+|+|+||||++.. .+-. .++..|. .-.++-+..|++....+-. ... ......+.+.
T Consensus 212 ~~pr~~~~~lvvL~DVSGSm~~ys-~~~L----~l~hAl~q~~~R~~~F~F~TRLt~vT~-----~l~--~rD~~~Al~~ 279 (395)
T COG3552 212 RRPRRRKPPLVVLCDVSGSMSGYS-RIFL----HLLHALRQQRSRVHVFLFGTRLTRVTH-----MLR--ERDLEDALRR 279 (395)
T ss_pred cCCccCCCCeEEEEecccchhhhH-HHHH----HHHHHHHhcccceeEEEeechHHHHHH-----Hhc--cCCHHHHHHH
Confidence 333457889999999999999732 1111 1122221 2455668899987543211 111 1223333333
Q ss_pred HhcC-C-CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH
Q psy17515 285 LANV-K-GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF 334 (1061)
Q Consensus 285 I~~l-~-~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~ 334 (1061)
+..- . -.|||.++.++.. | ......+. -...-+|+++|||...+.
T Consensus 280 ~~a~v~dw~ggTrig~tl~a-F---~~~~~~~~-L~~gA~VlilsDg~drd~ 326 (395)
T COG3552 280 LSAQVKDWDGGTRIGNTLAA-F---LRRWHGNV-LSGGAVVLILSDGLDRDD 326 (395)
T ss_pred HHhhcccccCCcchhHHHHH-H---Hccccccc-cCCceEEEEEecccccCC
Confidence 3322 2 3689999998843 2 22211110 012348999999998754
No 86
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.29 Score=50.48 Aligned_cols=142 Identities=13% Similarity=0.207 Sum_probs=97.2
Q ss_pred CceEEEEEccCCCCC-c----chHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHH
Q psy17515 212 PKDIVILLDASSTLS-T----KHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKA 283 (1061)
Q Consensus 212 pkdVVILlD~SGSM~-g----~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~ 283 (1061)
+-.+|+|||.|--|. | .|++.-|+++..|+..- ++..-+|++.-...... ...........++.
T Consensus 3 lEatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~--------vlsT~T~~~gkilt 74 (243)
T COG5148 3 LEATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPN--------VLSTPTKQRGKILT 74 (243)
T ss_pred cceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcc--------hhccchhhhhHHHH
Confidence 456799999998775 3 58999999999998763 24556888887655322 22222345678899
Q ss_pred HHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhC-CCCCCeeEEEEEecCCchhh
Q psy17515 284 ALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYN-WPHMPVRLFSYLIGKSSNYA 362 (1061)
Q Consensus 284 ~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n-~~~~~VrIfTigIG~~~d~~ 362 (1061)
++..+.-.|+.++..+|..|.-.|+......+ ..+++.++-.-..+...+.++... ....+|.|-.+-+|.-.+..
T Consensus 75 ~lhd~~~~g~a~~~~~lqiaql~lkhR~nk~q---~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~n~~ 151 (243)
T COG5148 75 FLHDIRLHGGADIMRCLQIAQLILKHRDNKGQ---RQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAANMA 151 (243)
T ss_pred HhccccccCcchHHHHHHHHHHHHhcccCCcc---ceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhhhhh
Confidence 99999999999999999999988887654322 233444554444444455444322 24567999999999765544
Q ss_pred hh
Q psy17515 363 EM 364 (1061)
Q Consensus 363 ~L 364 (1061)
.|
T Consensus 152 ~l 153 (243)
T COG5148 152 GL 153 (243)
T ss_pred HH
Confidence 33
No 87
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.06 E-value=0.14 Score=57.36 Aligned_cols=172 Identities=16% Similarity=0.212 Sum_probs=101.5
Q ss_pred ceEEEEEccCCCCCc--------chHHHHHHHHHHHHHH---cCCCCEEEEEEEcCc-eeeeecccccc---c-------
Q psy17515 213 KDIVILLDASSTLST--------KHRNLARATINVILDT---LGSNDFVNIFTFSDV-TVELVPCYREM---L------- 270 (1061)
Q Consensus 213 kdVVILlD~SGSM~g--------~~l~~aK~a~~~iLdt---L~~~D~v~Vv~Fs~~-~~~~~~c~~~~---l------- 270 (1061)
-=+++|||++.--+| ..+..+.+++..+++. +...-+|+||+..+. .+.+.|--... .
T Consensus 3 slL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~ 82 (279)
T TIGR00627 3 SLLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKR 82 (279)
T ss_pred cEEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCcccccccccccccc
Confidence 346788888765442 2455555555555553 567888999887643 33343321000 0
Q ss_pred c---------ccCHHhHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHhcccCC-CCCCCceEEEEEeCCCCCcHHH
Q psy17515 271 V---------QATDENKRTLKAALANVK----GDNVANFTGALATAFEILHKYNRTN-QGCQCNQAIMLVSSGPPSAFKE 336 (1061)
Q Consensus 271 v---------~at~~n~~~lk~~I~~l~----~~G~Tnl~~AL~~A~~~L~~~~~~~-~~~~~~~~IvLlTDG~~~~~~~ 336 (1061)
. .....-.+.+++.++... ..+.+.+..||..|+-.+.+..... ........|++++-+... ..+
T Consensus 83 ~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~~~-~~q 161 (279)
T TIGR00627 83 LRELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITPDM-ALQ 161 (279)
T ss_pred ccchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCCCc-hHH
Confidence 0 000011344445554432 2256789999999998887653221 122345566666654333 222
Q ss_pred -------HHHhhCCCCCCeeEEEEEecCCchhhhhhhhhccCCccceeeecccccccee
Q psy17515 337 -------VFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKV 388 (1061)
Q Consensus 337 -------i~~~~n~~~~~VrIfTigIG~~~d~~~L~~IA~~ngG~y~~I~~~~dv~e~v 388 (1061)
++. . ...+|+|-+++++.+.+..+||+++..+||.|..+.+...+.+-+
T Consensus 162 Yi~~mn~Ifa-a--qk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q~L 217 (279)
T TIGR00627 162 YIPLMNCIFS-A--QKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQYL 217 (279)
T ss_pred HHHHHHHHHH-H--HHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHHHH
Confidence 222 1 356799999999876668899999999999999887766554443
No 88
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=94.94 E-value=0.14 Score=63.47 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=87.6
Q ss_pred ceEEEEEccCCCCCc--------chHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeeeeccccc-----cccccCHH
Q psy17515 213 KDIVILLDASSTLST--------KHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYRE-----MLVQATDE 276 (1061)
Q Consensus 213 kdVVILlD~SGSM~g--------~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~~~c~~~-----~lv~at~~ 276 (1061)
--|+||||+|-||.. .++..|..++..++... +++|-|||+.|+++...--.+|++ .|-..+.+
T Consensus 11 eailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a~ 90 (584)
T TIGR00578 11 DSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAK 90 (584)
T ss_pred eEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCHH
Confidence 458899999999974 46888888888888764 589999999999864321112221 23344444
Q ss_pred hHHHHHHHHhcCC--------CCC-CcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH-----HH-HHHhh
Q psy17515 277 NKRTLKAALANVK--------GDN-VANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF-----KE-VFKHY 341 (1061)
Q Consensus 277 n~~~lk~~I~~l~--------~~G-~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~-----~~-i~~~~ 341 (1061)
.++.+.+.+..-. ..+ ...+..||-.|.++|.+... ...++.|+|+||-..-.. .+ +....
T Consensus 91 ~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~----k~~~kRI~lfTd~D~P~~~~~~~~~~a~~~a 166 (584)
T TIGR00578 91 RILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQF----RMSHKRIMLFTNEDNPHGNDSAKASRARTKA 166 (584)
T ss_pred HHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcch----hhcCcEEEEECCCCCCCCCchhHHHHHHHHH
Confidence 5555555443200 111 13789999999999986321 124679999999644321 11 11111
Q ss_pred CC-CCCCeeEEEEEecC
Q psy17515 342 NW-PHMPVRLFSYLIGK 357 (1061)
Q Consensus 342 n~-~~~~VrIfTigIG~ 357 (1061)
+. .+.+|.|-.|.|..
T Consensus 167 ~dl~~~gi~ielf~l~~ 183 (584)
T TIGR00578 167 GDLRDTGIFLDLMHLKK 183 (584)
T ss_pred HHHHhcCeEEEEEecCC
Confidence 11 35577777776654
No 89
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=94.62 E-value=0.4 Score=53.73 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=100.7
Q ss_pred ceEEEEEccCCCCCc-----chHHHHHHHHHHHHHH---cCCCCEEEEEEEcCc-eeeeeccccc------ccccc---C
Q psy17515 213 KDIVILLDASSTLST-----KHRNLARATINVILDT---LGSNDFVNIFTFSDV-TVELVPCYRE------MLVQA---T 274 (1061)
Q Consensus 213 kdVVILlD~SGSM~g-----~~l~~aK~a~~~iLdt---L~~~D~v~Vv~Fs~~-~~~~~~c~~~------~lv~a---t 274 (1061)
-=++||||++-.-++ ..+..+.+++..+++. ++..-+|.||+.+.. .+.+.|.... .-+.. .
T Consensus 2 SLLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~ 81 (276)
T PF03850_consen 2 SLLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSD 81 (276)
T ss_pred cEEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCcccccccc
Confidence 346788898865554 2466666666666664 567788999887654 3444443220 00000 0
Q ss_pred -----------HHhHHHHHHHHhcCCCCC----CcchHHHHHHHHHHHHhcccCCC--CCCCceEEEEEeCCCCCcHHH-
Q psy17515 275 -----------DENKRTLKAALANVKGDN----VANFTGALATAFEILHKYNRTNQ--GCQCNQAIMLVSSGPPSAFKE- 336 (1061)
Q Consensus 275 -----------~~n~~~lk~~I~~l~~~G----~Tnl~~AL~~A~~~L~~~~~~~~--~~~~~~~IvLlTDG~~~~~~~- 336 (1061)
..-.+.+++.++.....+ .+.+..||..|+-.+.+...... +......|+++.-|.++...+
T Consensus 82 ~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QY 161 (276)
T PF03850_consen 82 SNKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQY 161 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHH
Confidence 001233444444432211 27899999999988887643321 123333444423333333322
Q ss_pred --HHH-hhCCCCCCeeEEEEEecCCchhhhhhhhhccCCccceeeeccccccc
Q psy17515 337 --VFK-HYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRM 386 (1061)
Q Consensus 337 --i~~-~~n~~~~~VrIfTigIG~~~d~~~L~~IA~~ngG~y~~I~~~~dv~e 386 (1061)
++. -+...+.+|.|-++.+|. .+..+|++.+..++|.|..+...+.+.+
T Consensus 162 i~~MN~iFaAqk~~v~IDv~~L~~-~~s~fLqQa~d~T~G~y~~~~~~~~l~q 213 (276)
T PF03850_consen 162 IPLMNCIFAAQKQKVPIDVCKLGG-KDSTFLQQASDITGGIYLKVSKPEGLLQ 213 (276)
T ss_pred HHHHHHHHHHhcCCceeEEEEecC-CchHHHHHHHHHhCceeeccCccccHHH
Confidence 111 112245689999999998 6778999999999999999887555443
No 90
>PTZ00395 Sec24-related protein; Provisional
Probab=94.53 E-value=0.2 Score=64.97 Aligned_cols=158 Identities=13% Similarity=0.179 Sum_probs=96.1
Q ss_pred CCCceEEEEEccCCCC-CcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcCceeee-------------------------
Q psy17515 210 TSPKDIVILLDASSTL-STKHRNLARATINVILDTLG-SNDFVNIFTFSDVTVEL------------------------- 262 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM-~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~~~~~------------------------- 262 (1061)
..|-..+||||+|-.= ...-+..+.++++..|+.+. +..+|+||+|++..+..
T Consensus 950 p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQML 1029 (1560)
T PTZ00395 950 MLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQVI 1029 (1560)
T ss_pred CCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceEE
Confidence 4678999999998643 33345788888888888886 56799999999887431
Q ss_pred ---------eccc-cccccccCHHhHHHHHHHHhcCC------CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEE
Q psy17515 263 ---------VPCY-REMLVQATDENKRTLKAALANVK------GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLV 326 (1061)
Q Consensus 263 ---------~~c~-~~~lv~at~~n~~~lk~~I~~l~------~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLl 326 (1061)
+|+- .+.|| ...+.++.+...|+.|. ...+..++.||+.|+.+|+..... -+++++.
T Consensus 1030 VVSDLDDPFLPlP~ddLLV-nL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGG------GKIiVF~ 1102 (1560)
T PTZ00395 1030 VMSDVDDPFLPLPLEDLFF-GCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGL------GSICMFY 1102 (1560)
T ss_pred eecCCccCcCCCCccCeee-chHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCC------ceEEEEE
Confidence 1211 11122 12244555666665552 234678999999999999975321 2244444
Q ss_pred eCCCCCcHH------------------------HHHHhhCCCCCCeeEEEEEecCC-ch--hhhhhhhhccCCcccee
Q psy17515 327 SSGPPSAFK------------------------EVFKHYNWPHMPVRLFSYLIGKS-SN--YAEMKQMACSNKGYFEF 377 (1061)
Q Consensus 327 TDG~~~~~~------------------------~i~~~~n~~~~~VrIfTigIG~~-~d--~~~L~~IA~~ngG~y~~ 377 (1061)
+ ..|+.+. ...... ....|.|-.|.++.. .+ ...|..++..++|..++
T Consensus 1103 S-SLPniGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~EC--sk~qISVDLFLfSsqYvDVDVATLg~Lsr~TGGqlyy 1177 (1560)
T PTZ00395 1103 T-TTPNCGIGAIKELKKDLQENFLEVKQKIFYDSLLLDL--YAFNISVDIFIISSNNVRVCVPSLQYVAQNTGGKILF 1177 (1560)
T ss_pred c-CCCCCCCCcccccccccccccccccchHHHHHHHHHH--HhcCCceEEEEccCcccccccccccchhcccceeEEE
Confidence 4 4443211 011111 233455555556554 43 57788999999995433
No 91
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.34 E-value=0.16 Score=56.20 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=59.4
Q ss_pred eEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHh-cCCCCC
Q psy17515 214 DIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALA-NVKGDN 292 (1061)
Q Consensus 214 dVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~-~l~~~G 292 (1061)
.++++||+||||...-++.+..-+..|+ -.++-...++.-.+.+... |+ +-.. +.+. .+..+|
T Consensus 263 ~i~vaVDtSGS~~d~ei~a~~~Ei~~Il--~~~~~eltli~~D~~v~~~---~~--~r~g---------~~~~~~~~ggG 326 (396)
T COG3864 263 KIVVAVDTSGSMTDAEIDAAMTEIFDIL--KNKNYELTLIECDNIVRRM---YR--VRKG---------RDMKKKLDGGG 326 (396)
T ss_pred heEEEEecCCCccHHHHHHHHHHHHHHH--hCCCcEEEEEEecchhhhh---hc--cCCc---------ccCCcccCCCC
Confidence 4789999999999877777777666666 2367777777776665431 11 0000 0111 133566
Q ss_pred CcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH
Q psy17515 293 VANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF 334 (1061)
Q Consensus 293 ~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~ 334 (1061)
+|++..+++ .|++.... -..|++|||.-+.+
T Consensus 327 ~Tdf~Pvfe----ylek~~~~-------~~lIyfTDG~gd~p 357 (396)
T COG3864 327 GTDFSPVFE----YLEKNRME-------CFLIYFTDGMGDQP 357 (396)
T ss_pred CccccHHHH----HHHhhccc-------ceEEEEccCCCCcc
Confidence 799988764 45553321 27889999988754
No 92
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=94.01 E-value=0.33 Score=59.82 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=63.7
Q ss_pred ccchhhHHhhhhccCCCCCcEEEeccC-CCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCC
Q psy17515 635 AMDAIWFKRAVDQHNIEPDSFVFSVPH-NSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACT 713 (1061)
Q Consensus 635 ~i~~~wYkra~~~~~~~~~~~v~s~p~-~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~ 713 (1061)
+..++||+.|+..... .+..+++.|| .+.. ....+||++..|.- +| ...+|+|+.+.++.+.+.+.+....
T Consensus 202 ~~~r~WY~~a~~~~~~-~~~~~~~~~~~~d~~-tg~~vit~s~pv~~--~g--~~~GVv~~di~l~~l~~~l~~~~~~-- 273 (570)
T PRK15426 202 YVTQPWFIGQSQRRNP-GRGVRWFTSQPDDAS-NTEPQVTASVPVDA--GN--YWYGVLAMDIPVRSLQQFLRNAIDK-- 273 (570)
T ss_pred cccChHHHhhhhhcCC-CCCeeEecCCccccc-CCCeEEEEEEEEcc--CC--eEEEEEEEEecHHHHHHHHHHhhcc--
Confidence 3456899999863211 2355567776 4432 33568888888853 33 3579999999999999988766310
Q ss_pred CCCCCCCCCCCCCcceeEecCCceEEeccccc
Q psy17515 714 AGPGCKKTCASDDLDCYVLDNNGFIILSEKYE 745 (1061)
Q Consensus 714 ~~~~c~~~C~~~~~~CyliD~~G~iv~S~~~~ 745 (1061)
..+-..||+|++|.+|++.+.+
T Consensus 274 ----------~~~g~~~Lvd~~G~iia~~~~~ 295 (570)
T PRK15426 274 ----------DLDGEYQLYDSHLRLLTSSAPG 295 (570)
T ss_pred ----------CCCcEEEEEcCCCcEEEecCcc
Confidence 1234579999999999997653
No 93
>KOG1985|consensus
Probab=93.93 E-value=0.7 Score=57.38 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=100.2
Q ss_pred cCCCceEEEEEccCCCCCc-chHHHHHHHHHHHHHHcC--CCCEEEEEEEcCceeeee--c------------------c
Q psy17515 209 ATSPKDIVILLDASSTLST-KHRNLARATINVILDTLG--SNDFVNIFTFSDVTVELV--P------------------C 265 (1061)
Q Consensus 209 a~~pkdVVILlD~SGSM~g-~~l~~aK~a~~~iLdtL~--~~D~v~Vv~Fs~~~~~~~--~------------------c 265 (1061)
.+.|.-.+||||+|-|-.. .-++.++.++..-||.|+ +..+|++|+|++..+..- . .
T Consensus 291 ~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~flp 370 (887)
T KOG1985|consen 291 PPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFLP 370 (887)
T ss_pred CCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccccccC
Confidence 4578899999999976544 467999999999999998 667899999999876421 0 0
Q ss_pred ccccccccCHHhHHHHHHHHhcC---C---CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH----
Q psy17515 266 YREMLVQATDENKRTLKAALANV---K---GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK---- 335 (1061)
Q Consensus 266 ~~~~lv~at~~n~~~lk~~I~~l---~---~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~---- 335 (1061)
..+.++-.-.+-|+.+...|+.+ . ..-+.+++.||+.||+++...-. +++++ .-+.++-+.
T Consensus 371 ~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG--------ri~vf-~s~lPnlG~G~L~ 441 (887)
T KOG1985|consen 371 MPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG--------RISVF-QSTLPNLGAGKLK 441 (887)
T ss_pred CchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC--------eEEEE-eccCCCCCccccc
Confidence 00111111111122233333333 1 23467899999999999987521 24444 334444221
Q ss_pred -----------HHH----------HhhC--CCCCCeeEEEEEecCC-chhhhhhhhhccCCcc
Q psy17515 336 -----------EVF----------KHYN--WPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGY 374 (1061)
Q Consensus 336 -----------~i~----------~~~n--~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~ 374 (1061)
+.. +++. -.+..|.|--|.+..+ .|..-|.-|+.-++|.
T Consensus 442 ~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~ 504 (887)
T KOG1985|consen 442 PREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQ 504 (887)
T ss_pred cccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCce
Confidence 100 0110 1456788888889888 8889999999999994
No 94
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=93.88 E-value=0.35 Score=57.63 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=69.5
Q ss_pred CCCceEEEEEccCCCCCc-----chHHHHHHHHHHH-HHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHH
Q psy17515 210 TSPKDIVILLDASSTLST-----KHRNLARATINVI-LDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKA 283 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g-----~~l~~aK~a~~~i-LdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~ 283 (1061)
...++|+|++|.|.||.. .+++.|..++..+ ...+..+|+|++..|++.....++ .....+....+.+
T Consensus 222 er~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~------p~~G~~~l~~~l~ 295 (416)
T COG1721 222 ERGRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIP------PSRGRRHLARILK 295 (416)
T ss_pred hcCceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeC------CCcchHHHHHHHH
Confidence 357999999999999984 6888888877766 456779999999999976432222 1122345666667
Q ss_pred HHhcCCCCCC-cchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 284 ALANVKGDNV-ANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 284 ~I~~l~~~G~-Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
.+..+.+.+. ++...++.. ...+. ...+.++++||=...
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~-~~~l~---------~~~~~~~~~~~l~~~ 335 (416)
T COG1721 296 ALALLRPAPEETDYIRRVSK-LDFLP---------PRRPLVILITDLARH 335 (416)
T ss_pred HhhccCCCCcchhHHHHhhh-hhccC---------cccceEEEeehhhcc
Confidence 7777765544 444444222 11111 234478888886654
No 95
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=92.73 E-value=0.44 Score=60.59 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=35.1
Q ss_pred cEEEEEEEEechHHHHhhccCCccCCceEEEEEeCCCcEEE
Q psy17515 452 NLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIY 492 (1061)
Q Consensus 452 ~llGVvg~DV~L~~L~~ll~~~klG~~GY~flVd~nG~VL~ 492 (1061)
.+.+...+.+|.+.|.+.+..++. .+||+|++|++|.+|+
T Consensus 247 ~~~~~~~~~~~~~~i~~ii~~l~~-~~~y~~v~d~~g~vla 286 (703)
T TIGR03785 247 DVEKLGTVLVPSPEIENILKGMSH-TGSRIWVVDQHARVLA 286 (703)
T ss_pred cccccCcccCCCHHHHHHHhcCCC-cCceEEEECCCCcEEe
Confidence 456666677999999999999999 5699999999999999
No 96
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=91.25 E-value=0.15 Score=47.52 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=24.0
Q ss_pred hHHHHhhccCCccCCceEEEEEeCCCcEEEcCCC
Q psy17515 463 IQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDF 496 (1061)
Q Consensus 463 L~~L~~ll~~~klG~~GY~flVd~nG~VL~HPdl 496 (1061)
-..+.+.+..+.+|.+||.|+.|.+|.+|+||..
T Consensus 41 ~~~a~~~l~~~r~~~~gY~fi~d~~g~~l~hp~~ 74 (95)
T PF08269_consen 41 QQQAREALRALRYGGDGYFFIYDMDGVVLAHPSN 74 (95)
T ss_dssp HHHHHHHHHH--SBTTB--EEE-TTSBEEEESS-
T ss_pred HHHHHHHHhccccCCCCeEEEEeCCCeEEEcCCC
Confidence 3456677788888999999999999999999963
No 97
>KOG1984|consensus
Probab=90.67 E-value=1.6 Score=54.51 Aligned_cols=102 Identities=23% Similarity=0.315 Sum_probs=70.3
Q ss_pred cCCCceEEEEEccCCCCCcc-hHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeee---------------------e
Q psy17515 209 ATSPKDIVILLDASSTLSTK-HRNLARATINVILDTLG---SNDFVNIFTFSDVTVEL---------------------V 263 (1061)
Q Consensus 209 a~~pkdVVILlD~SGSM~g~-~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~---------------------~ 263 (1061)
...|-..||+||+|-.-..+ -..++-++++.+|+.|. ++-+|+|++|++.++.+ +
T Consensus 414 ~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfv 493 (1007)
T KOG1984|consen 414 PPKPPAFVFMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFV 493 (1007)
T ss_pred CCCCceEEEEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeeccccccc
Confidence 56788999999998654333 34677788888888876 57899999999988632 2
Q ss_pred ccccccccccCHHhHHHHHHHHhcC---C-CCC--CcchHHHHHHHHHHHHhcc
Q psy17515 264 PCYREMLVQATDENKRTLKAALANV---K-GDN--VANFTGALATAFEILHKYN 311 (1061)
Q Consensus 264 ~c~~~~lv~at~~n~~~lk~~I~~l---~-~~G--~Tnl~~AL~~A~~~L~~~~ 311 (1061)
|...+.+|+ ..+.++.++..|+.+ - ..+ .|-++.||+.|+..|+...
T Consensus 494 Pf~~g~~V~-~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~ 546 (1007)
T KOG1984|consen 494 PFLDGLFVN-PNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD 546 (1007)
T ss_pred ccccCeecc-chHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC
Confidence 322333333 234455556555555 2 223 5789999999999998764
No 98
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=90.23 E-value=0.98 Score=49.92 Aligned_cols=157 Identities=14% Similarity=0.190 Sum_probs=85.8
Q ss_pred CceEEEEEccCCCCCcc-----hHH-HHHHHHHHHHHHcCC--CCEEEEEEEcCceeeeeccccccccccCHHhHHHHHH
Q psy17515 212 PKDIVILLDASSTLSTK-----HRN-LARATINVILDTLGS--NDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKA 283 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g~-----~l~-~aK~a~~~iLdtL~~--~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~ 283 (1061)
-++++++||+|.+|... +.. +.|-|...+.+-++. =.+.+|+..-+... .++..-..|.+....
T Consensus 87 iRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a--------~~~s~~~gnpq~hi~ 158 (421)
T COG5151 87 IRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCA--------KYTSSMDGNPQAHIG 158 (421)
T ss_pred hheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHH--------HHhhhcCCCHHHHHH
Confidence 37899999999999864 333 333333344444443 34677776544311 122222346666666
Q ss_pred HHhcC-CCCCCcchHHHHHHH-HHHHHhcccCCCCCCCceEEEEEeC--CCCCcHHHHHHhhCCCCCCeeEEEEEecCCc
Q psy17515 284 ALANV-KGDNVANFTGALATA-FEILHKYNRTNQGCQCNQAIMLVSS--GPPSAFKEVFKHYNWPHMPVRLFSYLIGKSS 359 (1061)
Q Consensus 284 ~I~~l-~~~G~Tnl~~AL~~A-~~~L~~~~~~~~~~~~~~~IvLlTD--G~~~~~~~i~~~~n~~~~~VrIfTigIG~~~ 359 (1061)
++.++ ...|.-.+..||+.| .+++...... .....||+-+- -.|.+.-+.+.++. ..+|||..+|+-.+
T Consensus 159 ~lkS~rd~~gnfSLqNaLEmar~~l~~~~~H~----trEvLiifgS~st~DPgdi~~tid~Lv--~~~IrV~~igL~ae- 231 (421)
T COG5151 159 QLKSKRDCSGNFSLQNALEMARIELMKNTMHG----TREVLIIFGSTSTRDPGDIAETIDKLV--AYNIRVHFIGLCAE- 231 (421)
T ss_pred HhhcccccCCChhHHhHHHHhhhhhccccccc----ceEEEEEEeecccCCCccHHHHHHHHH--hhceEEEEEeehhH-
Confidence 66666 478888899999998 4444433221 12223333221 22223334444443 34588888888754
Q ss_pred hhhhhhhhhccC----Cccceeeeccccc
Q psy17515 360 NYAEMKQMACSN----KGYFEFIKNTDRL 384 (1061)
Q Consensus 360 d~~~L~~IA~~n----gG~y~~I~~~~dv 384 (1061)
...-+.|..++ .|.|..+-+...+
T Consensus 232 -vaicKeickaTn~~~e~~y~v~vde~Hl 259 (421)
T COG5151 232 -VAICKEICKATNSSTEGRYYVPVDEGHL 259 (421)
T ss_pred -HHHHHHHHhhcCcCcCceeEeeecHHHH
Confidence 33445554444 6667665554433
No 99
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=89.74 E-value=0.39 Score=57.16 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=63.1
Q ss_pred eeccCCCceEEEEEccCCCCCcch--HHHHHHHHHHHHHHcCCCCEEEEEEEcCceeee----------eccccc-----
Q psy17515 206 VEAATSPKDIVILLDASSTLSTKH--RNLARATINVILDTLGSNDFVNIFTFSDVTVEL----------VPCYRE----- 268 (1061)
Q Consensus 206 i~aa~~pkdVVILlD~SGSM~g~~--l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~----------~~c~~~----- 268 (1061)
.++...|.|+.+|+|.|+||.... +...-..+..-|..+..+-++|.=+|-+++... -||...
T Consensus 96 ~~a~~yPvDLYyLmDlS~Sm~ddl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~ 175 (426)
T PF00362_consen 96 RPAEDYPVDLYYLMDLSYSMKDDLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQ 175 (426)
T ss_dssp EBSSS--EEEEEEEE-SGGGHHHHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B
T ss_pred eeccccceeEEEEeechhhhhhhHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhhcCcccccCCCCC
Confidence 345678999999999999998632 211112233345567788899999998875321 133110
Q ss_pred -----cccccCHHhHHHHHHHHhcCCCCCCcch-HHHHHHHHHHH--HhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 269 -----MLVQATDENKRTLKAALANVKGDNVANF-TGALATAFEIL--HKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 269 -----~lv~at~~n~~~lk~~I~~l~~~G~Tnl-~~AL~~A~~~L--~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
.-+..-..|..++.+.|++..-+|.-+- ..+|...++.. .+.- +=+....++||+.||+...
T Consensus 176 ~~~~f~~~l~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~i--gWr~~a~~llv~~TD~~fH 245 (426)
T PF00362_consen 176 PPFSFRHVLSLTDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEI--GWRNEARRLLVFSTDAGFH 245 (426)
T ss_dssp ---SEEEEEEEES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHH--T--STSEEEEEEEESS-B-
T ss_pred CCeeeEEeecccchHHHHHHhhhhccccCCCCCCccccchheeeeeccccc--CcccCceEEEEEEcCCccc
Confidence 0011122578899999998865543221 11222222211 1111 1113467899999998765
No 100
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=89.51 E-value=14 Score=39.52 Aligned_cols=175 Identities=13% Similarity=0.160 Sum_probs=97.8
Q ss_pred ccceeeccCCCceEEEEEccCCCCC------cchHHHHHHHHHHHHHH---cCCCCEEEEE-EEcCceeeeecccccccc
Q psy17515 202 SAWFVEAATSPKDIVILLDASSTLS------TKHRNLARATINVILDT---LGSNDFVNIF-TFSDVTVELVPCYREMLV 271 (1061)
Q Consensus 202 R~Wyi~aa~~pkdVVILlD~SGSM~------g~~l~~aK~a~~~iLdt---L~~~D~v~Vv-~Fs~~~~~~~~c~~~~lv 271 (1061)
|+|-+... +|.=++++||.-.--. |. .....+.+--+|+. +..+.+|+|+ .|+....++.|--...+-
T Consensus 11 ~s~~vtee-spslL~viid~~p~~W~~~~ek~~-~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k 88 (296)
T COG5242 11 RSKQVTEE-SPSLLFVIIDLEPENWELTTEKGS-RDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALK 88 (296)
T ss_pred hhcccccc-CCceEEEEEecChhhccccccccc-HHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhh
Confidence 45655433 4666777777644322 22 33333444444443 4677888877 467777776553221111
Q ss_pred c-----------------cCHHhHHHHHHHHhcCC-CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeC-CCCC
Q psy17515 272 Q-----------------ATDENKRTLKAALANVK-GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSS-GPPS 332 (1061)
Q Consensus 272 ~-----------------at~~n~~~lk~~I~~l~-~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTD-G~~~ 332 (1061)
- .+...+.++.+.+..-. .+.-++++.|+..|+.......+. .+-.. .|+++|= |.+.
T Consensus 89 ~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~~k~sqr~~v~gams~glay~n~~~~e--~slkS-riliftlsG~d~ 165 (296)
T COG5242 89 ASESENTRNSDMYRRFRNVDETDITEIYRLIEHPHKNSQRYDVGGAMSLGLAYCNHRDEE--TSLKS-RILIFTLSGRDR 165 (296)
T ss_pred hhcccCccchhhhhhhcccchHHHHHHHHHHhCcccccceeehhhhhhhhHHHHhhhccc--ccccc-eEEEEEecCchh
Confidence 1 11112444555554442 233578889999988887765433 22234 4444554 6333
Q ss_pred cHHH--HHH-hhCCCCCCeeEEEEEecCCchhhhhhhhhccCCccceeeecccc
Q psy17515 333 AFKE--VFK-HYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDR 383 (1061)
Q Consensus 333 ~~~~--i~~-~~n~~~~~VrIfTigIG~~~d~~~L~~IA~~ngG~y~~I~~~~d 383 (1061)
..+- .+. .+.....+++|-.+.||.. ..+|++-+.++||-|..+++.+-
T Consensus 166 ~~qYip~mnCiF~Aqk~~ipI~v~~i~g~--s~fl~Q~~daTgG~Yl~ve~~eG 217 (296)
T COG5242 166 KDQYIPYMNCIFAAQKFGIPISVFSIFGN--SKFLLQCCDATGGDYLTVEDTEG 217 (296)
T ss_pred hhhhchhhhheeehhhcCCceEEEEecCc--cHHHHHHhhccCCeeEeecCchh
Confidence 2211 000 1112456788888888865 56888999999999999987543
No 101
>KOG4465|consensus
Probab=89.38 E-value=0.37 Score=54.02 Aligned_cols=139 Identities=21% Similarity=0.211 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCccccccCccceeeccCCCceEEEEEccCCCCCc----chHHHHHHHHHHHHHHcCCCCEEEEEEEcCce
Q psy17515 184 MKWPVDGVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLST----KHRNLARATINVILDTLGSNDFVNIFTFSDVT 259 (1061)
Q Consensus 184 ~~w~~~~~~~~~~yD~R~R~Wyi~aa~~pkdVVILlD~SGSM~g----~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~ 259 (1061)
..|.++. .-|+..|..+-.-|..+.+..|...+.+|+||||.. ..+...-.|+..-+-.|...--+-+|+|.++.
T Consensus 400 l~wepde-~i~dalda~fykaf~na~ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnead~~~vaf~d~l 478 (598)
T KOG4465|consen 400 LKWEPDE-EICDALDAAFYKAFKNAEPTGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEADSRCVAFCDEL 478 (598)
T ss_pred cccCCcH-HHHHHHHHHHHHHhccCCCCCceEEEEEecchhhhhhhhccccchHHHHhhhheeeeccccceeEEEecccc
Confidence 3576642 135666655555577777888999999999999974 33433222222223345555567789999885
Q ss_pred eeeeccccccccccCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH----H
Q psy17515 260 VELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF----K 335 (1061)
Q Consensus 260 ~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~----~ 335 (1061)
.. .|..+ .-.+.+...+++++.+ |+|+-+..+.-|-+ + ....-+.|++||...-.+ -
T Consensus 479 te-~pftk-------d~kigqv~~~~nni~~-g~tdcglpm~wa~e-----n-----nlk~dvfii~tdndt~ageihp~ 539 (598)
T KOG4465|consen 479 TE-CPFTK-------DMKIGQVLDAMNNIDA-GGTDCGLPMIWAQE-----N-----NLKADVFIIFTDNDTFAGEIHPA 539 (598)
T ss_pred cc-CCCcc-------cccHHHHHHHHhcCCC-CCCccCCceeehhh-----c-----CCCccEEEEEecCcccccccCHH
Confidence 43 12111 1246778888888875 56665555544422 1 112348889999776543 3
Q ss_pred HHHHhhC
Q psy17515 336 EVFKHYN 342 (1061)
Q Consensus 336 ~i~~~~n 342 (1061)
+.+.+|.
T Consensus 540 ~aik~yr 546 (598)
T KOG4465|consen 540 EAIKEYR 546 (598)
T ss_pred HHHHHHH
Confidence 4566665
No 102
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=86.70 E-value=1.2 Score=54.01 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=48.0
Q ss_pred CcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhhccCCccCCce-EEEEEeCCCcEEEcCCCCccc
Q psy17515 430 GKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNG-YSFVVNNNGRIIYHPDFRPLY 500 (1061)
Q Consensus 430 ~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~ll~~~klG~~G-Y~flVd~nG~VL~HPdl~~~~ 500 (1061)
+++-..++.||++. |.++||+++-|+++.|..... ..| .+|+.|.+|.|++.......+
T Consensus 154 ~~pGyy~a~pV~~~-------~~ilGvivvKvdl~~lE~~W~-----~s~~~vlv~D~~GvvflSS~p~Wr~ 213 (603)
T COG4191 154 GRPGYYLAAPVDDG-------GGILGVIVVKVDLDRLEAQWQ-----ASGELVLVTDENGVVFLSSVPAWRF 213 (603)
T ss_pred CCCceeEeeeeccC-------CceeEEEEEEEehHHHHHHHh-----cCCceEEEECCCceEEEeCCHHhhh
Confidence 56667899999875 679999999999999998764 344 789999999999987655443
No 103
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=85.96 E-value=1.5 Score=49.28 Aligned_cols=102 Identities=16% Similarity=0.258 Sum_probs=60.4
Q ss_pred HHHHhhccCCccCCceEEEEEeCCCcEEEcCCCCcc-cccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHH-Hh
Q psy17515 464 QQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPL-YVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDM-ID 541 (1061)
Q Consensus 464 ~~L~~ll~~~klG~~GY~flVd~nG~VL~HPdl~~~-~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~m-i~ 541 (1061)
++.+..+.++.+|.+||.|+.|-+|.=++||-.... +. |-.++.+ .+. + .+..++ .+
T Consensus 80 ~evk~iLt~ldyG~DGYFF~YD~~G~NlvHPrQpelvG~-------nlw~L~D-----~rG-----d----~~Iq~Li~k 138 (459)
T COG4564 80 QEVKAILTNLDYGSDGYFFVYDYQGTNLVHPRQPELVGQ-------NLWQLTD-----PRG-----D----RVIQALIAK 138 (459)
T ss_pred HHHHHHHhhcccCCCceEEEEecCCccccCCCCcccccc-------chhhccC-----CCc-----C----hHHHHHHHH
Confidence 467778899999999999999999999999954332 21 2222322 111 1 222333 33
Q ss_pred cCCCceeEEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcc
Q psy17515 542 QKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGY 588 (1061)
Q Consensus 542 ~~~G~~~~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~ 588 (1061)
.++|..- +.|..+.-.--....+.-+-.+++.+.|.++.-+.-++
T Consensus 139 Aq~GGG~--~qYlWeKPSs~e~v~KLsyaa~ldkW~WMiGTGlYldD 183 (459)
T COG4564 139 AQEGGGL--HQYLWEKPSSHETVDKLSYAAGLDKWEWMIGTGLYLDD 183 (459)
T ss_pred HHhCCCe--EEEeecCCCcccchhhhccccCccccceeeecceehHh
Confidence 3444322 23333321100011245566899999999998887776
No 104
>KOG1986|consensus
Probab=85.28 E-value=24 Score=43.83 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=100.7
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeee----cccccccccc-------------
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELV----PCYREMLVQA------------- 273 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~----~c~~~~lv~a------------- 273 (1061)
.|.-+++|||+= |....++..|.++...|+.|+++-.||+|+|+..++... .|-+..+...
T Consensus 120 ~ppvf~fVvDtc--~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~~~L 197 (745)
T KOG1986|consen 120 SPPVFVFVVDTC--MDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLLDLL 197 (745)
T ss_pred CCceEEEEEeec--cChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHHHHh
Confidence 466778999975 667899999999999999999999999999999887532 1211111111
Q ss_pred ----------------------CHHhHHHHHHHHhcCCC------CCC---cchHHHHHHHHHHHHhcccCCCCCCCceE
Q psy17515 274 ----------------------TDENKRTLKAALANVKG------DNV---ANFTGALATAFEILHKYNRTNQGCQCNQA 322 (1061)
Q Consensus 274 ----------------------t~~n~~~lk~~I~~l~~------~G~---Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~ 322 (1061)
..+-...+.+.++.|.+ .|- -..+.||..|..+|.... ++....
T Consensus 198 ~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c~-----p~~g~r 272 (745)
T KOG1986|consen 198 GLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGCF-----PNTGAR 272 (745)
T ss_pred cCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhcccC-----CCCcce
Confidence 11112333444444432 221 346677777777776543 235568
Q ss_pred EEEEeCCCCCcHH----------------------------------HHHHhhCCCCCCeeEEEEEecCCchhhhhhhhh
Q psy17515 323 IMLVSSGPPSAFK----------------------------------EVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMA 368 (1061)
Q Consensus 323 IvLlTDG~~~~~~----------------------------------~i~~~~n~~~~~VrIfTigIG~~~d~~~L~~IA 368 (1061)
||+++-|-.+.+. ...++......-+-||+-++-. ....+|+.++
T Consensus 273 Iv~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~ghvlDifa~~lDQ-vGi~EMk~l~ 351 (745)
T KOG1986|consen 273 IVLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQGHVLDIFAAALDQ-VGILEMKPLV 351 (745)
T ss_pred EEEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCCceEeeeeeeccc-cchHHHHHHh
Confidence 9999988555210 0112222233445566554432 7778999999
Q ss_pred ccCCccceeeec
Q psy17515 369 CSNKGYFEFIKN 380 (1061)
Q Consensus 369 ~~ngG~y~~I~~ 380 (1061)
..+||.....++
T Consensus 352 ~~TGG~lvl~ds 363 (745)
T KOG1986|consen 352 ESTGGVLVLGDS 363 (745)
T ss_pred hcCCcEEEEecc
Confidence 999998655443
No 105
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=84.30 E-value=7.4 Score=51.26 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=48.1
Q ss_pred cccCCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEE--EechHHHHhhccCCccCCceE
Q psy17515 403 QTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAV--DVPIQQIQKLVPQYKLGPNGY 480 (1061)
Q Consensus 403 ~~~~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~--DV~L~~L~~ll~~~klG~~GY 480 (1061)
.....++|-.|+.+..+ + .+.+..|+++. |...|++|+ +++++.+. ..-. ..+-
T Consensus 165 ~~~~~~~w~~~~~~~~~----------~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~--~~~~ 220 (924)
T PRK10841 165 DKGSNLYWISPGARPGV----------G--YFYALTPVYLA-------NRLQALLGIEQTIRLENFF---TPGT--LPMG 220 (924)
T ss_pred cccCCeEEeCCCCCCCC----------c--EEEEEEEEecC-------CCceEEEEEEecccHHhhc---cccC--CCCc
Confidence 34457899999987654 2 48899999976 689999994 45454444 2222 2233
Q ss_pred EEEEeCCCcEEEcC
Q psy17515 481 SFVVNNNGRIIYHP 494 (1061)
Q Consensus 481 ~flVd~nG~VL~HP 494 (1061)
.+|+|.+|.+++|.
T Consensus 221 ~~~~~~~~~~~~~~ 234 (924)
T PRK10841 221 VTLLDENGHPLLSL 234 (924)
T ss_pred eEEECCCCCEEecC
Confidence 78999999999974
No 106
>PF10388 YkuI_C: EAL-domain associated signalling protein domain; InterPro: IPR018842 In most cases this highly conserved region of the YkuI protein lies immediately downstream of the EAL (diguanylate cyclase/phosphodiesterase) domain IPR001633 from INTERPRO so that together they form a monomer which dimerises for its enzymatic action. This region contains three alpha helices and five beta strands and forms C-terminal half of the structure. ; PDB: 3BY9_A 2BAS_B 2W27_A.
Probab=80.04 E-value=1.9 Score=44.74 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=34.4
Q ss_pred eecccccccccc-----cCCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHH
Q psy17515 393 LVMARPLIMYQT-----EHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQ 467 (1061)
Q Consensus 393 d~larp~~~~~~-----~~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~ 467 (1061)
+--.|||+.++. .+..+.|+||.|..+ +.++.|++.|+.+. .++-+||+.+.|-
T Consensus 102 NWSwRPYF~~~i~~~~~~~~~~~S~~Y~di~t----------~~~~~T~S~pl~~~-----------~~LfiDi~~~~l~ 160 (166)
T PF10388_consen 102 NWSWRPYFLENIAKMRNERRGILSDPYRDIAT----------GELCRTFSYPLDNE-----------RYLFIDISYSYLY 160 (166)
T ss_dssp B-TTSCCHHHHCCCCHHH-S-EE---EE-TTT-----------SEEEEEEEEETTT-----------EEEEEEE-HHHHC
T ss_pred CCcccHHHHHHHHHHhhcCCeEECCceEeccC----------CCEEEEEEEEecCC-----------cEEEEEecHHHhh
Confidence 455688887642 356799999999987 58999999999542 5667799987763
No 107
>KOG2487|consensus
Probab=77.80 E-value=26 Score=38.69 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=95.0
Q ss_pred CCceEEEEEccCCCCCc--------chHHHHHHHHHHHHHH---cCCCCEEEEEEEcCcee-eeec----cccc---c--
Q psy17515 211 SPKDIVILLDASSTLST--------KHRNLARATINVILDT---LGSNDFVNIFTFSDVTV-ELVP----CYRE---M-- 269 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g--------~~l~~aK~a~~~iLdt---L~~~D~v~Vv~Fs~~~~-~~~~----c~~~---~-- 269 (1061)
.|.=+++|||.+.--.| ..+....+++-.+++. ++.+-+|.|++...+.. .+.| |-.+ .
T Consensus 22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 57778899999883222 2455555666666654 45788999998855443 3333 1000 0
Q ss_pred -----------ccccCHHhHHHHHHHHhcCCC--CC-CcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH
Q psy17515 270 -----------LVQATDENKRTLKAALANVKG--DN-VANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK 335 (1061)
Q Consensus 270 -----------lv~at~~n~~~lk~~I~~l~~--~G-~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~ 335 (1061)
+..++..-.+++++.+..-.. .| -|-+..|+..|+--............-...|++||=+.....+
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~q 181 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRALQ 181 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHHhh
Confidence 001111113444555443321 12 3555555555554444333221112233467777775554332
Q ss_pred H------HHHhhCCCCCCeeEEEEEecCCchhhhhhhhhccCCccceeeecccc
Q psy17515 336 E------VFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDR 383 (1061)
Q Consensus 336 ~------i~~~~n~~~~~VrIfTigIG~~~d~~~L~~IA~~ngG~y~~I~~~~d 383 (1061)
- +|.. ...+++|-.+.+|.+ ..+|++-+..+||-|.++..+.-
T Consensus 182 yi~~MNciFaA---qKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~g 230 (314)
T KOG2487|consen 182 YIPYMNCIFAA---QKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDG 230 (314)
T ss_pred hhhHHHHHHHH---HhcCceeEEEEecCC--chHHHHHHhhcCCeeEecCCcch
Confidence 1 2322 356799999999987 67899999999999999886543
No 108
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=75.05 E-value=43 Score=42.13 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=85.5
Q ss_pred cCCCceEEEEEccCCC-CCcchHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeeee--------------------c
Q psy17515 209 ATSPKDIVILLDASST-LSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELV--------------------P 264 (1061)
Q Consensus 209 a~~pkdVVILlD~SGS-M~g~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~~--------------------~ 264 (1061)
...|...||+||+|-. |...-...+..+++..|+.+ .++-+++||.|++..+.+- |
T Consensus 273 ~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~~~vsdld~pFlP 352 (861)
T COG5028 273 QPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQMLIVSDLDEPFLP 352 (861)
T ss_pred cCCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCccceeeeccccccccc
Confidence 4679999999999853 22223344445555555544 3677999999999886531 1
Q ss_pred cccccccccCH---HhHHHHHHHHhcCC-CCC--CcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeC------CCCC
Q psy17515 265 CYREMLVQATD---ENKRTLKAALANVK-GDN--VANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSS------GPPS 332 (1061)
Q Consensus 265 c~~~~lv~at~---~n~~~lk~~I~~l~-~~G--~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTD------G~~~ 332 (1061)
...+.++..-. .+++.|.+.+..+. ..+ .-.++.||+.|..++.... -++|++++- |...
T Consensus 353 f~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~~G--------Gkii~~~stlPn~G~Gkl~ 424 (861)
T COG5028 353 FPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTG--------GKIIVFLSTLPNMGIGKLQ 424 (861)
T ss_pred CCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhccC--------ceEEEEeecCCCccccccc
Confidence 11111221111 13334555555553 233 3478999999988776532 236666632 2221
Q ss_pred ----c-----------HHHHHHhhCCCCCCeeEEEEEecCC-chhhhhhhhhccCCcc
Q psy17515 333 ----A-----------FKEVFKHYNWPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGY 374 (1061)
Q Consensus 333 ----~-----------~~~i~~~~n~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~ 374 (1061)
. .++.-.++. ..+|.|-.|....+ .|...|-.++.-++|.
T Consensus 425 ~r~d~e~~ll~c~d~fYk~~a~e~~--k~gIsvd~Flt~~~yidvaTls~l~~~T~G~ 480 (861)
T COG5028 425 LREDKESSLLSCKDSFYKEFAIECS--KVGISVDLFLTSEDYIDVATLSHLCRYTGGQ 480 (861)
T ss_pred ccccchhhhccccchHHHHHHHHHH--HhcceEEEEeccccccchhhhcchhhccCcc
Confidence 0 011111222 23444544555555 6667777777788884
No 109
>KOG1226|consensus
Probab=74.58 E-value=7 Score=48.75 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=72.6
Q ss_pred eeeccCCCceEEEEEccCCCCCcc--hHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeee----------ecccc-----
Q psy17515 205 FVEAATSPKDIVILLDASSTLSTK--HRNLARATINVILDTLGSNDFVNIFTFSDVTVEL----------VPCYR----- 267 (1061)
Q Consensus 205 yi~aa~~pkdVVILlD~SGSM~g~--~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~----------~~c~~----- 267 (1061)
|.+|...|.|+..|+|-|-||... +++..=+-+..-+..|..+-++|.=.|-+.+... -||-.
T Consensus 125 ~r~a~~yPVDLYyLMDlS~SM~DDl~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK~v~P~i~~~pekl~npc~~~~~C~ 204 (783)
T KOG1226|consen 125 VRQAEDYPVDLYYLMDLSYSMKDDLENLKSLGTDLAREMRKLTSNFRLGFGSFVDKTVSPYISTTPEKLRNPCPNYKNCA 204 (783)
T ss_pred EeeccCCCeeEEEEeecchhhhhhHHHHHHHHHHHHHHHHHHhccCCccccchhccccccccccCcHHhcCCCCCcccCC
Confidence 556778999999999999999974 4444445555557777888888877776654321 12211
Q ss_pred ----ccccccCHHhHHHHHHHHhcCCCCCCcch-HHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 268 ----EMLVQATDENKRTLKAALANVKGDNVANF-TGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 268 ----~~lv~at~~n~~~lk~~I~~l~~~G~Tnl-~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
=.-+-....|...+.+.+.+-+-.|.-+- ..||...++...=...-+=.....+.+||.||...-
T Consensus 205 ppfgfkhvLsLT~~~~~F~~~V~~q~ISgNlDaPEGGfDAimQaavC~~~IGWR~~a~~lLVF~td~~~H 274 (783)
T KOG1226|consen 205 PPFGFKHVLSLTNDAEEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEKIGWRNDATRLLVFSTDAGFH 274 (783)
T ss_pred CCcccceeeecCCChHHHHHHHhhceeccCCCCCCchHHHHHhhhhccccccccccceeEEEEEcCccee
Confidence 00111223567788888876654442211 112322222211111111122356789999998765
No 110
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=73.99 E-value=20 Score=48.88 Aligned_cols=177 Identities=14% Similarity=0.216 Sum_probs=94.0
Q ss_pred CCceEEEEEccCCCCCcch-HHHHHHHHHHHHHHcC--CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 211 SPKDIVILLDASSTLSTKH-RNLARATINVILDTLG--SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~-l~~aK~a~~~iLdtL~--~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
+.-.|+|-||-|.||+..+ -.+|-+++.-+-.+|+ +--.++|+.|+.....+.| |...+. .+. -.+....
T Consensus 4391 r~yqvmisiddsksmses~~~~la~etl~lvtkals~le~g~iav~kfge~~~~lh~-fdkqfs---~es---g~~~f~~ 4463 (4600)
T COG5271 4391 RTYQVMISIDDSKSMSESGSTVLALETLALVTKALSLLEVGQIAVMKFGEQPELLHP-FDKQFS---SES---GVQMFSH 4463 (4600)
T ss_pred ceeEEEEEecccccccccCceeeehHHHHHHHHHHHHHhhccEEEEecCCChhhhCc-hhhhhc---chH---HHHHHHh
Confidence 3457899999999999753 3445555444444443 5667999999999876655 222221 111 1122222
Q ss_pred CC-CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHH---HhhCCCCCCeeEEEEEecCCchhhh
Q psy17515 288 VK-GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVF---KHYNWPHMPVRLFSYLIGKSSNYAE 363 (1061)
Q Consensus 288 l~-~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~---~~~n~~~~~VrIfTigIG~~~d~~~ 363 (1061)
+. ....||..+-.....+.+..++... .....|.=|+|+||.-++.+.+- ++.+ ..+-..||.|.=|-.+....
T Consensus 4464 f~feqs~tnv~~l~~~s~k~f~~a~t~~-h~d~~qleiiisdgicedhdsi~kllrra~-e~kvmivfvild~v~t~~si 4541 (4600)
T COG5271 4464 FTFEQSNTNVLALADASMKCFNYANTAS-HHDIRQLEIIISDGICEDHDSIRKLLRRAQ-EEKVMIVFVILDNVNTQKSI 4541 (4600)
T ss_pred hchhcccccHHHHHHHHHHHHHHhhhhc-ccchheeEEEeecCcccchHHHHHHHHHhh-hcceEEEEEEecCCccchhh
Confidence 32 2345776655555556665544321 22355678899999999876643 3333 33334556555444333332
Q ss_pred hhhhhccCCccceeeeccccccceeeeeeeeccccccc
Q psy17515 364 MKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIM 401 (1061)
Q Consensus 364 L~~IA~~ngG~y~~I~~~~dv~e~v~~y~d~larp~~~ 401 (1061)
| .| .+-+| .....+...-+++.|.|..+-.+|.
T Consensus 4542 l-di---~kv~y-~~~e~g~~~lki~~yid~f~fd~yl 4574 (4600)
T COG5271 4542 L-DI---KKVYY-DTKEDGTMDLKIQPYIDEFAFDYYL 4574 (4600)
T ss_pred h-hh---Hhhcc-ccccCCCcceeeeechhcccceeEE
Confidence 2 11 11122 2222233334555666655555544
No 111
>KOG2326|consensus
Probab=68.24 E-value=59 Score=39.86 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=77.4
Q ss_pred ceEEEEEccCCCCCc------chHHHHHHHHHHHHHH--c--CCCCEEEEEEEcCceee----------eeccccccccc
Q psy17515 213 KDIVILLDASSTLST------KHRNLARATINVILDT--L--GSNDFVNIFTFSDVTVE----------LVPCYREMLVQ 272 (1061)
Q Consensus 213 kdVVILlD~SGSM~g------~~l~~aK~a~~~iLdt--L--~~~D~v~Vv~Fs~~~~~----------~~~c~~~~lv~ 272 (1061)
+-.++++|++.+|+- ..++.|+.++..+|.. + +..|-|+++.|+-++.. -+.|...-..+
T Consensus 5 e~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~~tp 84 (669)
T KOG2326|consen 5 ESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPVTTP 84 (669)
T ss_pred cceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecccch
Confidence 445556699999974 3689999999877653 2 36799999999866542 12332222222
Q ss_pred cCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHH--HHhhCCCCCCeeE
Q psy17515 273 ATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEV--FKHYNWPHMPVRL 350 (1061)
Q Consensus 273 at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i--~~~~n~~~~~VrI 350 (1061)
+...-...++..++.=. -..++..||-..+.++.+...-+. ....+.|++.++|..+...+. ++.. .+..|-+
T Consensus 85 af~~l~k~~~~~~qqns--~q~Df~gal~vs~dL~~qhe~~~k-~~~kr~Il~~~~l~~dfsd~~~ive~l--~~~didL 159 (669)
T KOG2326|consen 85 AFIGLIKRLKQYCQQNS--HQSDFEGALSVSQDLLVQHEDIKK-QFQKRKILKQIVLFTDFSDDLFIVEDL--TDEDIDL 159 (669)
T ss_pred hhHHHHHHHHHhcCCCc--cccchhhhHHHHHHHHHHHHhccc-hhhceEEEEeecccccchhhHHHHHHH--hhcCcce
Confidence 22222222222222211 135688888888887665432211 112334444455544444443 2222 3456777
Q ss_pred EEEEecCC
Q psy17515 351 FSYLIGKS 358 (1061)
Q Consensus 351 fTigIG~~ 358 (1061)
-++|+..+
T Consensus 160 ~~~gldf~ 167 (669)
T KOG2326|consen 160 LTEGLDFR 167 (669)
T ss_pred eEeeccCC
Confidence 77777643
No 112
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=57.37 E-value=26 Score=42.54 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=26.8
Q ss_pred HHHHhhccCCcc-CCceEEEEEeCCCcEEEcCCCCccc
Q psy17515 464 QQIQKLVPQYKL-GPNGYSFVVNNNGRIIYHPDFRPLY 500 (1061)
Q Consensus 464 ~~L~~ll~~~kl-G~~GY~flVd~nG~VL~HPdl~~~~ 500 (1061)
..+++++..++. +..+|+|++|.+|..++||+.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~y~~v~d~~g~~~~h~~~~~iG 116 (542)
T PRK11086 79 SGIQTYAEAVRKRNDLLFIVVTDMQGIRYSHPNPQKIG 116 (542)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEcCCCCEEECCChHHcC
Confidence 344555555544 5668999999999999999766553
No 113
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=55.76 E-value=44 Score=32.22 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCcEEEcCCCCccccc
Q psy17515 477 PNGYSFVVNNNGRIIYHPDFRPLYVE 502 (1061)
Q Consensus 477 ~~GY~flVd~nG~VL~HPdl~~~~~~ 502 (1061)
.--|++|+|.+|.+++||+.+.+++.
T Consensus 38 ~~~~i~v~D~~g~~l~~s~~~~iG~~ 63 (116)
T PF14827_consen 38 DIDYIVVTDRDGIVLAHSDPERIGDR 63 (116)
T ss_dssp T-SEEEEECTTSBECE-SSCCCTTSB
T ss_pred CCeEEEEEcCCCCEEEcCChHHcCCc
Confidence 34699999999999999988887543
No 114
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=48.30 E-value=94 Score=38.40 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=75.8
Q ss_pred chhhHHhhhhccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCCC
Q psy17515 637 DAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGP 716 (1061)
Q Consensus 637 ~~~wYkra~~~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~~ 716 (1061)
+..+|+.|+... .+.| |.+=..++ ..++. .|+.|..+ +. |.+|+.+|++++.+...+.+.
T Consensus 131 fRpYf~~Am~gg---~~r~-yalGtts~--~pGyy--~a~pV~~~--~~--ilGvivvKvdl~~lE~~W~~s-------- 190 (603)
T COG4191 131 FRPYFQDAMAGG---SGRF-YALGTTSG--RPGYY--LAAPVDDG--GG--ILGVIVVKVDLDRLEAQWQAS-------- 190 (603)
T ss_pred cHHHHHHHHhcC---Ccee-EeeccccC--CCcee--EeeeeccC--Cc--eeEEEEEEEehHHHHHHHhcC--------
Confidence 557888898742 2222 33322222 12333 45556644 22 889999999999998875443
Q ss_pred CCCCCCCCCCcceeEecCCceEEecccccccccccccccHHHHHHhHhCCccc--eecceecccc
Q psy17515 717 GCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYK--RVPMYDNQGV 779 (1061)
Q Consensus 717 ~c~~~C~~~~~~CyliD~~G~iv~S~~~~~~G~ffg~i~~~~m~~l~~~~if~--~~~~~DyQa~ 779 (1061)
..--|+.|++|-|++|.+.+=..+-..-+.+.-+..+-..-=|- .+..+.+|..
T Consensus 191 ---------~~~vlv~D~~GvvflSS~p~Wr~~~l~pls~~~~~~~~~s~qy~~~~l~plp~q~~ 246 (603)
T COG4191 191 ---------GELVLVTDENGVVFLSSVPAWRFKALEPLSAARRARLEASRQYGDAPLEPLPLQRG 246 (603)
T ss_pred ---------CceEEEECCCceEEEeCCHHhhhcCCCCCCHHHHHHHHhhccCCCCCCCcCCcccc
Confidence 23468999999999999987788888888888887776554343 2345556553
No 115
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=46.05 E-value=34 Score=30.93 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=31.9
Q ss_pred CCCceEEEEEccCCCCCc-----chHHHHHHHHHHHHHHc-CCCCEEE
Q psy17515 210 TSPKDIVILLDASSTLST-----KHRNLARATINVILDTL-GSNDFVN 251 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g-----~~l~~aK~a~~~iLdtL-~~~D~v~ 251 (1061)
....+++|++|.+++|.. ..++.+...+..++..+ ..++.|+
T Consensus 38 ~~~~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~g~~v~ 85 (86)
T PF01882_consen 38 ERSQPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQGDPVG 85 (86)
T ss_pred ccCCcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 456899999999999985 67788877777776654 4566654
No 116
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=36.01 E-value=49 Score=31.88 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=24.0
Q ss_pred CcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHH
Q psy17515 430 GKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQ 465 (1061)
Q Consensus 430 ~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~ 465 (1061)
++..+....||+|.+ |+++|++.+-++++.
T Consensus 86 ~~~~~~~~~PV~d~~------g~viG~V~VG~~~~~ 115 (116)
T PF14827_consen 86 GGPSLRAFAPVYDSD------GKVIGVVSVGVSLDS 115 (116)
T ss_dssp TCEEEEEEEEEE-TT------S-EEEEEEEEEEHHC
T ss_pred CceEEEEEEeeECCC------CcEEEEEEEEEEcCC
Confidence 578999999999753 899999999888764
No 117
>KOG0071|consensus
Probab=34.52 E-value=1.5e+02 Score=30.07 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=55.2
Q ss_pred cCccceeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHH
Q psy17515 200 RSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKR 279 (1061)
Q Consensus 200 R~R~Wyi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~ 279 (1061)
+.||....--+...-++||+|.+.| .+++.|+.-+..++..-.-.+-+-+| +.+.-. +..| ...+
T Consensus 73 ~iRplWrhYy~gtqglIFV~Dsa~~---dr~eeAr~ELh~ii~~~em~~~~~Lv-lANkQD---------lp~A--~~pq 137 (180)
T KOG0071|consen 73 KIRPLWRHYYTGTQGLIFVVDSADR---DRIEEARNELHRIINDREMRDAIILI-LANKQD---------LPDA--MKPQ 137 (180)
T ss_pred hhhHHHHhhccCCceEEEEEeccch---hhHHHHHHHHHHHhCCHhhhcceEEE-EecCcc---------cccc--cCHH
Confidence 3455444333467889999999987 79999999999998654333333333 333311 1111 1234
Q ss_pred HHHHHHhcCCCC--------CCcchHHHHHHHHHHHHh
Q psy17515 280 TLKAALANVKGD--------NVANFTGALATAFEILHK 309 (1061)
Q Consensus 280 ~lk~~I~~l~~~--------G~Tnl~~AL~~A~~~L~~ 309 (1061)
++++.+.--... ....-+.||..++..|.+
T Consensus 138 ei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsn 175 (180)
T KOG0071|consen 138 EIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSN 175 (180)
T ss_pred HHHHHhccccccCCccEeeccccccchhHHHHHHHHHh
Confidence 455544322211 134566788888887765
No 118
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=31.56 E-value=97 Score=37.98 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=36.7
Q ss_pred CceEEEEEeCCCCCcHHHHHHhhCCCCCCeeEEEEEecCC----chhhhhhhhhccCCcccee
Q psy17515 319 CNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKS----SNYAEMKQMACSNKGYFEF 377 (1061)
Q Consensus 319 ~~~~IvLlTDG~~~~~~~i~~~~n~~~~~VrIfTigIG~~----~d~~~L~~IA~~ngG~y~~ 377 (1061)
..-+++|+||...-..+..+... +.....+.-+.+|.. ++-..++.+-...||....
T Consensus 727 ~ydav~llsd~gsyel~~~~~~~--~~~~~p~wlvhlg~tl~~ay~d~~i~~l~~s~ggva~~ 787 (952)
T TIGR02921 727 AYDAVLLLSDAGSYELEKNFKLK--AAQMAPLWLVHLGETLAGAYHDGIIDLLKDSGGGVALD 787 (952)
T ss_pred ccceEEEeccCcchhhhhccccc--cCCCCceEEEecCccccccccchHHHHHHhcCCCeEee
Confidence 44589999998776654443321 345567788888874 4445566666777776443
No 119
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.17 E-value=91 Score=28.15 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17515 40 DGLVLIRELAAEVKNMIDIKINTVMRILE 68 (1061)
Q Consensus 40 dg~~lv~~~a~~~~~~l~~k~~av~~l~~ 68 (1061)
+..+.++++++..++ |+.|++++++|.+
T Consensus 39 ~d~~~L~~L~~~a~r-m~eRI~tLE~ILd 66 (75)
T PF06667_consen 39 EDEQRLQELYEQAER-MEERIETLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 347788999988877 7899999999985
No 120
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.98 E-value=96 Score=27.94 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17515 40 DGLVLIRELAAEVKNMIDIKINTVMRILES 69 (1061)
Q Consensus 40 dg~~lv~~~a~~~~~~l~~k~~av~~l~~~ 69 (1061)
+..++++++++..++ |+.|++++++|.++
T Consensus 39 ~d~~~L~~L~~~A~r-m~~RI~tLE~ILDa 67 (75)
T PRK09458 39 EEQQRLAQLTEKAER-MRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHcc
Confidence 456788888888776 78999999999874
No 121
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=20.70 E-value=2.6e+02 Score=27.43 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=29.4
Q ss_pred CCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhh
Q psy17515 429 EGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKL 469 (1061)
Q Consensus 429 ~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~l 469 (1061)
.|+.+-+.+..+++.+ |+++|++++.++++.+.+.
T Consensus 78 ~Gk~lrSsT~~Ird~~------g~~iG~LCIN~D~s~~~~~ 112 (118)
T PF08348_consen 78 DGKILRSSTFFIRDEN------GKLIGALCINFDISALEQA 112 (118)
T ss_pred CCCEEEEEEEEEECCC------CCEEEEEEEEeccHHHHHH
Confidence 3688889999998863 8999999999998887654
Done!