Query psy17515
Match_columns 1061
No_of_seqs 635 out of 2924
Neff 6.8
Searched_HMMs 29240
Date Sat Aug 17 00:33:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 99.8 9.9E-20 3.4E-24 215.0 15.6 181 210-397 75-259 (464)
2 1q0p_A Complement factor B; VO 99.8 1.2E-18 4E-23 185.0 16.6 174 210-388 13-212 (223)
3 1ijb_A VON willebrand factor; 99.8 3.6E-18 1.2E-22 179.7 17.1 164 211-386 12-186 (202)
4 4hqf_A Thrombospondin-related 99.7 9.8E-18 3.4E-22 185.5 15.3 167 210-386 19-200 (281)
5 4hqo_A Sporozoite surface prot 99.7 6.5E-18 2.2E-22 185.6 13.5 169 210-386 16-197 (266)
6 3ibs_A Conserved hypothetical 99.7 7.9E-18 2.7E-22 178.3 11.7 161 210-388 9-205 (218)
7 3zqk_A VON willebrand factor; 99.7 1.8E-17 6.1E-22 174.0 13.7 162 210-387 19-185 (199)
8 1mf7_A Integrin alpha M; cell 99.7 1.2E-17 4.1E-22 174.0 11.3 166 211-386 4-180 (194)
9 2xgg_A Microneme protein 2; A/ 99.7 6.4E-17 2.2E-21 166.6 14.4 147 211-365 16-169 (178)
10 2b2x_A Integrin alpha-1; compu 99.7 1E-16 3.6E-21 171.0 16.4 165 210-386 20-202 (223)
11 1n3y_A Integrin alpha-X; alpha 99.7 3.4E-17 1.2E-21 170.7 11.0 166 210-386 7-184 (198)
12 1pt6_A Integrin alpha-1; cell 99.7 6.7E-17 2.3E-21 171.1 12.8 163 211-386 6-187 (213)
13 1atz_A VON willebrand factor; 99.7 2.6E-16 8.8E-21 163.4 16.5 164 211-384 4-173 (189)
14 2odp_A Complement C2; C3/C5 co 99.7 7.1E-17 2.4E-21 193.1 13.6 177 210-391 7-209 (509)
15 1mjn_A Integrin alpha-L; rossm 99.7 7.7E-17 2.6E-21 166.2 11.3 160 212-385 2-169 (179)
16 1v7p_C Integrin alpha-2; snake 99.7 1.8E-16 6.1E-21 166.2 14.1 163 211-386 5-186 (200)
17 2x31_A Magnesium-chelatase 60 99.7 2.8E-18 9.7E-23 177.9 0.1 157 210-380 3-173 (189)
18 3n2n_F Anthrax toxin receptor 99.7 4.1E-16 1.4E-20 160.6 16.3 159 210-384 5-173 (185)
19 1shu_X Anthrax toxin receptor 99.7 3.9E-16 1.3E-20 160.3 15.4 161 211-385 5-171 (182)
20 1rrk_A Complement factor B; BB 99.6 2.8E-16 9.6E-21 187.1 12.3 173 212-389 1-199 (497)
21 3hrz_D Complement factor B; se 99.6 5.2E-16 1.8E-20 193.8 13.7 176 210-390 241-442 (741)
22 3lif_A Putative diguanylate cy 99.5 3.4E-14 1.1E-18 153.5 15.2 150 392-596 93-247 (254)
23 3li9_A Hypothetical sensory tr 99.5 3.9E-14 1.3E-18 156.2 14.0 159 391-599 119-279 (291)
24 3lib_A Hypothetical sensory tr 99.5 4.2E-14 1.4E-18 155.8 13.0 157 391-597 118-276 (290)
25 3lic_A Sensor protein; PDC fol 99.5 9.8E-14 3.3E-18 151.1 12.0 151 392-588 111-264 (274)
26 4b4t_W RPN10, 26S proteasome r 99.5 1.1E-13 3.7E-18 150.9 12.0 146 214-373 5-163 (268)
27 3c8c_A Methyl-accepting chemot 99.5 4.7E-13 1.6E-17 141.6 15.5 151 392-600 87-238 (240)
28 2x5n_A SPRPN10, 26S proteasome 99.4 9.1E-13 3.1E-17 137.7 14.9 143 213-370 3-158 (192)
29 3k6s_A Integrin alpha-X; cell 99.4 1.8E-13 6.1E-18 176.5 9.7 166 210-385 128-304 (1095)
30 3lid_A Putative sensory BOX/gg 99.1 8.9E-11 3E-15 130.7 10.5 154 393-588 112-271 (295)
31 2ww8_A RRGA, cell WALL surface 99.1 1.8E-10 6.1E-15 144.9 12.5 122 209-334 221-393 (893)
32 3by9_A Sensor protein; histidi 99.1 5E-10 1.7E-14 120.5 14.1 84 393-499 100-184 (260)
33 4dah_A Sporulation kinase D; a 99.1 1.9E-10 6.4E-15 121.2 9.8 89 392-498 93-182 (217)
34 1jey_B KU80; double-strand DNA 99.0 1.2E-09 4E-14 132.3 12.7 141 212-358 7-170 (565)
35 1yvr_A RO autoantigen, 60-kDa 98.9 1.5E-09 5E-14 130.7 9.0 129 210-358 366-504 (538)
36 3rag_A Uncharacterized protein 98.8 3.5E-09 1.2E-13 112.9 6.8 94 210-311 132-229 (242)
37 1jey_A KU70; double-strand DNA 98.6 7.8E-08 2.7E-12 117.2 11.0 141 212-358 34-208 (609)
38 2nvo_A RO sixty-related protei 98.6 5.4E-08 1.8E-12 116.9 8.4 128 210-358 360-500 (535)
39 3e4o_A C4-dicarboxylate transp 98.3 3.1E-06 1.1E-10 94.5 12.7 85 393-500 141-226 (305)
40 2qhk_A Methyl-accepting chemot 98.1 5.2E-06 1.8E-10 84.8 9.3 109 463-598 49-160 (174)
41 2nut_A Protein transport prote 97.8 0.00014 4.8E-09 90.7 16.2 162 210-380 130-380 (769)
42 4exo_A Methyl-accepting chemot 97.6 0.00015 5.2E-09 71.8 9.2 103 463-587 42-145 (146)
43 2iue_A Pactolus I-domain; memb 97.6 7.6E-05 2.6E-09 78.4 7.3 110 211-333 2-118 (212)
44 1pcx_A Protein transport prote 97.4 0.00061 2.1E-08 85.4 12.4 162 210-380 185-412 (810)
45 3ub6_A Chemoreceptor TLPB; hom 97.3 0.00066 2.2E-08 69.8 9.2 100 465-588 55-158 (181)
46 1m2o_A SEC23, protein transpor 97.3 0.0029 9.9E-08 79.0 16.6 163 210-379 119-373 (768)
47 3rag_A Uncharacterized protein 96.9 0.00083 2.8E-08 71.7 5.8 64 319-385 9-80 (242)
48 1m2v_B SEC24, protein transpor 96.8 0.0031 1E-07 79.8 10.7 161 210-379 301-527 (926)
49 3fcs_B Integrin beta-3; beta p 96.7 0.00078 2.7E-08 82.6 4.4 124 205-332 104-255 (690)
50 3eh1_A Protein transport prote 96.6 0.0071 2.4E-07 75.1 11.7 158 210-379 158-375 (751)
51 3t3p_B Integrin beta-3; integr 96.4 0.0017 5.9E-08 75.5 4.7 125 205-333 104-256 (472)
52 3efo_B SEC24 related gene fami 96.4 0.017 5.6E-07 72.1 13.6 161 209-379 174-400 (770)
53 3eh2_A Protein transport prote 96.3 0.018 6.2E-07 71.7 12.9 161 209-379 170-396 (766)
54 3vi3_B Integrin beta-1; beta p 96.2 0.0043 1.5E-07 71.6 6.4 126 205-332 115-263 (454)
55 3lic_A Sensor protein; PDC fol 96.2 0.01 3.4E-07 63.7 8.7 103 637-765 117-227 (274)
56 3k6s_B Integrin beta-2; cell r 96.0 0.0035 1.2E-07 76.7 4.5 122 206-332 98-246 (687)
57 3v4v_B Integrin beta-7; cell a 96.0 0.0043 1.5E-07 72.4 4.9 123 205-332 125-274 (503)
58 3c8c_A Methyl-accepting chemot 96.0 0.013 4.3E-07 60.9 8.2 94 636-750 90-183 (240)
59 3lib_A Hypothetical sensory tr 95.8 0.013 4.6E-07 63.5 7.6 95 636-755 122-218 (290)
60 3li9_A Hypothetical sensory tr 95.6 0.015 5.1E-07 63.1 7.0 94 637-755 124-219 (291)
61 4dah_A Sporulation kinase D; a 95.4 0.039 1.3E-06 57.2 8.9 85 636-744 96-180 (217)
62 3lif_A Putative diguanylate cy 95.4 0.042 1.5E-06 58.2 9.4 105 636-763 96-201 (254)
63 3by9_A Sensor protein; histidi 95.1 0.11 3.9E-06 54.7 11.8 98 636-762 102-199 (260)
64 3e4o_A C4-dicarboxylate transp 94.8 0.17 5.7E-06 56.1 12.5 107 636-771 143-249 (305)
65 2bas_A YKUI protein; EAL domai 93.8 0.037 1.3E-06 64.4 4.5 57 392-469 366-427 (431)
66 3lid_A Putative sensory BOX/gg 92.8 0.17 5.8E-06 55.6 7.6 108 636-765 114-236 (295)
67 2bas_A YKUI protein; EAL domai 72.7 1.7 5.9E-05 50.3 3.1 56 636-704 369-427 (431)
68 3by8_A Sensor protein DCUS; hi 68.5 5.8 0.0002 38.2 5.4 38 430-473 103-140 (142)
69 1p0z_A Sensor kinase CITA; tra 56.3 7.6 0.00026 36.7 3.7 32 430-467 98-129 (131)
70 1p0z_A Sensor kinase CITA; tra 39.8 1.3E+02 0.0044 27.9 9.4 35 465-500 36-72 (131)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.81 E-value=9.9e-20 Score=214.96 Aligned_cols=181 Identities=16% Similarity=0.152 Sum_probs=151.5
Q ss_pred CCCceEEEEEccCCCCC--cchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 210 TSPKDIVILLDASSTLS--TKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~--g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
..|.+|+||||+||||. |.+++.+|+++..+++.|.++|+|+||.|++.+..+.|.. ..+.+++..+++.++.+|+.
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t-~~l~~~~~~~~~~l~~~I~~ 153 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTG-GQLLRADYQSRAAAKEAVGR 153 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSS-SSCEECSHHHHHHHHHHHHT
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCC-cccccCCHHHHHHHHHHHHc
Confidence 46899999999999999 9999999999999999999999999999999999877642 34778889999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH--HHHHHhhCCCCCCeeEEEEEecCCchhhhhh
Q psy17515 288 VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF--KEVFKHYNWPHMPVRLFSYLIGKSSNYAEMK 365 (1061)
Q Consensus 288 l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~--~~i~~~~n~~~~~VrIfTigIG~~~d~~~L~ 365 (1061)
+.+.|+|++..||..|+++|... +...+.|||||||.++.. ..+.........+++||+||||.+.+...|+
T Consensus 154 L~~~GgT~l~~aL~~A~~~l~~~------~~~~~~IILLTDG~~~~~~~~~l~~~~~a~~~~i~i~tiGiG~~~d~~~L~ 227 (464)
T 4fx5_A 154 LHANGGTAMGRWLAQAGRIFDTA------PSAIKHAILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELR 227 (464)
T ss_dssp CCCCSCCCHHHHHHHHHHHHTTC------TTSEEEEEEEESSCCTTSCHHHHHHHHHHHTTTCEEEEEEESSSSCHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHhcC------CCCCCEEEEEcCCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCccCHHHHH
Confidence 99999999999999999999762 235679999999999843 1222222212457999999999999999999
Q ss_pred hhhccCCccceeeeccccccceeeeeeeeccc
Q psy17515 366 QMACSNKGYFEFIKNTDRLRMKVFNYVLVMAR 397 (1061)
Q Consensus 366 ~IA~~ngG~y~~I~~~~dv~e~v~~y~d~lar 397 (1061)
.||..++|.|+.+.+.+++...+.+.+..+..
T Consensus 228 ~IA~~tgG~~~~v~d~~~L~~~f~~i~~~~~s 259 (464)
T 4fx5_A 228 KIADALLGTVGIIRDPATLAEDFREMTAKSMG 259 (464)
T ss_dssp HHHHHTTCCEEEESSGGGHHHHHHHHHHHHHT
T ss_pred HHHHhCCCEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999988877666554444433
No 2
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.78 E-value=1.2e-18 Score=184.97 Aligned_cols=174 Identities=13% Similarity=0.183 Sum_probs=131.3
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHh
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALA 286 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~ 286 (1061)
..|.||+||||+||||.+.+++.+|+++..+++.|. .+++|+||.|++.+...++ +......|++.++.+|+
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~-----~~~~~~~~~~~~~~~i~ 87 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-----VSEADSSNADWVTKQLN 87 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEEC-----TTSGGGGCHHHHHHHHH
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeec-----cccCCCCCHHHHHHHHH
Confidence 468999999999999999999999999999988764 5799999999999886543 22334456788999999
Q ss_pred cCCC-----CCCcchHHHHHHHHHHHHhcccCCC--CCCCceEEEEEeCCCCC---cHHH---HHHhh--------CCCC
Q psy17515 287 NVKG-----DNVANFTGALATAFEILHKYNRTNQ--GCQCNQAIMLVSSGPPS---AFKE---VFKHY--------NWPH 345 (1061)
Q Consensus 287 ~l~~-----~G~Tnl~~AL~~A~~~L~~~~~~~~--~~~~~~~IvLlTDG~~~---~~~~---i~~~~--------n~~~ 345 (1061)
.+.+ +|+|++..||..|.+.|........ .+...++|||||||.++ +... .++.. ....
T Consensus 88 ~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
T 1q0p_A 88 EINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPRE 167 (223)
T ss_dssp TCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCG
T ss_pred hcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhccc
Confidence 9974 6899999999999999885422110 12467899999999998 3333 22221 1245
Q ss_pred CCeeEEEEEecCCchhhhhhhhhccCCc--cceeeecccccccee
Q psy17515 346 MPVRLFSYLIGKSSNYAEMKQMACSNKG--YFEFIKNTDRLRMKV 388 (1061)
Q Consensus 346 ~~VrIfTigIG~~~d~~~L~~IA~~ngG--~y~~I~~~~dv~e~v 388 (1061)
.+|+||+||||.+.+...|+.||..++| .|+.+.+.+++...+
T Consensus 168 ~~i~i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~ 212 (223)
T 1q0p_A 168 DYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVF 212 (223)
T ss_dssp GGEEEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC--------
T ss_pred CCcEEEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHH
Confidence 6899999999999999999999999999 888887766665443
No 3
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.77 E-value=3.6e-18 Score=179.71 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=128.5
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
.|.||+||||+||||.+.+++.+|++++.+++.|. ++++|+||.|++.+...++ +.. ..+++.++++|+.
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~-----l~~--~~~~~~~~~~i~~ 84 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIG-----LKD--RKRPSELRRIASQ 84 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEEC-----TTC--CCCHHHHHHHHHT
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEe-----cCC--CCCHHHHHHHHHh
Confidence 48999999999999999999999999999999997 6799999999999876543 221 2357889999999
Q ss_pred CCCCCC--cchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH-----HHHHHhhCCCCCCeeEEEEEecCCch
Q psy17515 288 VKGDNV--ANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF-----KEVFKHYNWPHMPVRLFSYLIGKSSN 360 (1061)
Q Consensus 288 l~~~G~--Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~-----~~i~~~~n~~~~~VrIfTigIG~~~d 360 (1061)
+...|+ |+++.||..|.+.+... +..++..++|||||||.++.. .+..+.+. ..+|+||+||||.+++
T Consensus 85 l~~~gg~~T~~~~aL~~a~~~~~~~---~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~--~~gi~i~~igvG~~~~ 159 (202)
T 1ijb_A 85 VKYAGSQVASTSEVLKYTLFQIFSK---IDRPEASRIALLLMASQEPQRMSRNFVRYVQGLK--KKKVIVIPVGIGPHAN 159 (202)
T ss_dssp CCCCCBSCCCHHHHHHHHHHHTSSS---CSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHH--HTTEEEEEEEESTTSC
T ss_pred CcCCCCCcCcHHHHHHHHHHHHhcc---CCCCCCCeEEEEEccCCCCccchHHHHHHHHHHH--HCCCEEEEEecCCcCC
Confidence 976543 99999999998654321 112346789999999999743 22333333 4689999999999999
Q ss_pred hhhhhhhhcc-CCccceeeeccccccc
Q psy17515 361 YAEMKQMACS-NKGYFEFIKNTDRLRM 386 (1061)
Q Consensus 361 ~~~L~~IA~~-ngG~y~~I~~~~dv~e 386 (1061)
...|+.||.. ++|.++.+.+..++..
T Consensus 160 ~~~L~~iA~~~~~~~~~~~~~~~~L~~ 186 (202)
T 1ijb_A 160 LKQIRLIEKQAPENKAFVLSSVDELEQ 186 (202)
T ss_dssp HHHHHHHHHHCTTCCCEEESSGGGHHH
T ss_pred HHHHHHHhCCCCcccEEEeCCHHHHHH
Confidence 9999999984 5678778877666543
No 4
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.74 E-value=9.8e-18 Score=185.49 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=132.6
Q ss_pred CCCceEEEEEccCCCCCcchH-HHHHHHHHHHHHHcCC---CCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH
Q psy17515 210 TSPKDIVILLDASSTLSTKHR-NLARATINVILDTLGS---NDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL 285 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l-~~aK~a~~~iLdtL~~---~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I 285 (1061)
..+.||+||||.||||.+..+ +.+|.+++.+++.|.. +++|+||.|++.+..+++ +......|++.+..+|
T Consensus 19 ~~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~-----l~~~~~~~~~~l~~~i 93 (281)
T 4hqf_A 19 NDEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIR-----LHSDASKNKEKALIII 93 (281)
T ss_dssp CSCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEE-----ECSSCSSCHHHHHHHH
T ss_pred CCceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEE-----ccccCccCHHHHHHHH
Confidence 368999999999999999777 9999999999999986 899999999999886553 3333334677888888
Q ss_pred hcCC----CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHH---HHhhCCCCCCeeEEEEEecCC
Q psy17515 286 ANVK----GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEV---FKHYNWPHMPVRLFSYLIGKS 358 (1061)
Q Consensus 286 ~~l~----~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i---~~~~n~~~~~VrIfTigIG~~ 358 (1061)
+.+. ++|+|+++.||..|.+.|.... ..++..++|||||||.+++..++ .+.+. ..+|+||+||||.+
T Consensus 94 ~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~---~r~~~~~~iillTDG~~~d~~~~~~~~~~l~--~~gv~i~~igiG~~ 168 (281)
T 4hqf_A 94 KSLLSTNLPYGKTSLTDALLQVRKHLNDRI---NRENANQLVVILTDGIPDSIQDSLKESRKLS--DRGVKIAVFGIGQG 168 (281)
T ss_dssp HHHHHTTGGGCSCCHHHHHHHHHHHHHTSC---CCTTCEEEEEEEESSCCSCHHHHHHHHHHHH--HTTCEEEEEEESSS
T ss_pred HHHhhccCCCCCccHHHHHHHHHHHHHhcc---CCCCCCEEEEEEecCCCCCcHHHHHHHHHHH--HCCCEEEEEeCCCc
Confidence 8875 5899999999999998887642 12346789999999999975443 33232 45799999999999
Q ss_pred chhhhhhhhhccC--Cc--cceeeeccccccc
Q psy17515 359 SNYAEMKQMACSN--KG--YFEFIKNTDRLRM 386 (1061)
Q Consensus 359 ~d~~~L~~IA~~n--gG--~y~~I~~~~dv~e 386 (1061)
.+..+|+.||... +| .++.+.+..++..
T Consensus 169 ~~~~~L~~iA~~~~~~g~~~~~~~~~~~~L~~ 200 (281)
T 4hqf_A 169 INVAFNRFLVGCHPSDGKCNLYADSAWENVKN 200 (281)
T ss_dssp CCHHHHHHHTTSCSSSSCCTTEEEECGGGHHH
T ss_pred cCHHHHHhhhCCCCCCCCCceEEecchhhhhc
Confidence 9999999999763 44 6777777666543
No 5
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.74 E-value=6.5e-18 Score=185.58 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=133.3
Q ss_pred CCCceEEEEEccCCCCCcchH-HHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH
Q psy17515 210 TSPKDIVILLDASSTLSTKHR-NLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL 285 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l-~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I 285 (1061)
..|.||+||||.||||.+..+ +.+|.+++.+++.|. ++++|+||.|++.+..+++ +......+++.+..+|
T Consensus 16 ~~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~-----l~~~~~~~~~~~~~~i 90 (266)
T 4hqo_A 16 NEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIR-----LGSGQSIDKRQALSKV 90 (266)
T ss_dssp CCCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEEC-----TTSHHHHCHHHHHHHH
T ss_pred CCceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEe-----cCCCCccCHHHHHHHH
Confidence 578999999999999999998 599999999999998 7899999999999887654 3333334688899999
Q ss_pred hcC----CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCC-CCCCeeEEEEEecCCch
Q psy17515 286 ANV----KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNW-PHMPVRLFSYLIGKSSN 360 (1061)
Q Consensus 286 ~~l----~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~-~~~~VrIfTigIG~~~d 360 (1061)
+.+ .++|+|+++.||..|.++|.... ..++..++|||||||.+++..++.+..+. ...+|+||+||||.+.+
T Consensus 91 ~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~---~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~~~ 167 (266)
T 4hqo_A 91 TELRKTYTPYGTTSMTAALDEVQKHLNDRV---NREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGIN 167 (266)
T ss_dssp HHHHHHCCCCSCCCHHHHHHHHHHHHHTTC---SCTTSEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSSCC
T ss_pred HHhhhccCCCCCCCHHHHHHHHHHHHhhcc---ccCCCCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCcccC
Confidence 988 57899999999999998887631 12346789999999999965443222111 24579999999999999
Q ss_pred hhhhhhhhccC--C--ccceeeeccccccc
Q psy17515 361 YAEMKQMACSN--K--GYFEFIKNTDRLRM 386 (1061)
Q Consensus 361 ~~~L~~IA~~n--g--G~y~~I~~~~dv~e 386 (1061)
..+|+.||... + +.++.+.+..++.+
T Consensus 168 ~~~L~~iA~~~~~~g~~~~~~~~d~~~L~~ 197 (266)
T 4hqo_A 168 HQFNRLIAGCRPREPNCKFYSYADWNEAVA 197 (266)
T ss_dssp HHHHHHHHTCCTTCSSCTTEECSCHHHHHH
T ss_pred HHHHHHhhCCCCCCCCCCeEEecCHHHHHH
Confidence 99999999764 2 36666666555544
No 6
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=7.9e-18 Score=178.29 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=129.5
Q ss_pred CCCceEEEEEccCCCCCcc-----hHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHH
Q psy17515 210 TSPKDIVILLDASSTLSTK-----HRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAA 284 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~-----~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~ 284 (1061)
..+.+|+||||+||||.+. +++.||.++..+++.+. +|+|+||.|++.+..+.|. ..+...+..+
T Consensus 9 ~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~---------~~~~~~~~~~ 78 (218)
T 3ibs_A 9 RKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPI---------TSDYISAKMF 78 (218)
T ss_dssp -CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEE---------ESCHHHHHHH
T ss_pred cCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCC---------CCCHHHHHHH
Confidence 5789999999999999975 99999999999999986 8999999999998765541 1246677888
Q ss_pred HhcCCC----CCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH--HHHHHhhCCCCCCeeEEEEEecC-
Q psy17515 285 LANVKG----DNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF--KEVFKHYNWPHMPVRLFSYLIGK- 357 (1061)
Q Consensus 285 I~~l~~----~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~--~~i~~~~n~~~~~VrIfTigIG~- 357 (1061)
|+.+.+ .|+|++..||..|.+.+... +...+.|||||||.++.. .+..+... ..+|+||++|||.
T Consensus 79 l~~l~~~~~~~g~T~l~~al~~a~~~l~~~------~~~~~~ivllTDG~~~~~~~~~~~~~~~--~~~i~v~~igig~~ 150 (218)
T 3ibs_A 79 LESISPSLISKQGTAIGEAINLATRSFTPQ------EGVGRAIIVITDGENHEGGAVEAAKAAA--EKGIQVSVLGVGMP 150 (218)
T ss_dssp HHTCCGGGCCSCSCCHHHHHHHHHTTSCSC------SSCCEEEEEEECCTTCCSCHHHHHHHHH--TTTEEEEEEEESCT
T ss_pred HHhcCcccCCCCCCcHHHHHHHHHHHHhhC------CCCCcEEEEEcCCCCCCCcHHHHHHHHH--hcCCEEEEEEecCC
Confidence 888865 68999999999999877653 235679999999999854 44444444 4679999999998
Q ss_pred ------------------------CchhhhhhhhhccCCccceeeecccccccee
Q psy17515 358 ------------------------SSNYAEMKQMACSNKGYFEFIKNTDRLRMKV 388 (1061)
Q Consensus 358 ------------------------~~d~~~L~~IA~~ngG~y~~I~~~~dv~e~v 388 (1061)
..+...|+.||..++|.|+.+.+..+....+
T Consensus 151 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~ 205 (218)
T 3ibs_A 151 EGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAI 205 (218)
T ss_dssp TCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHH
T ss_pred CCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHH
Confidence 4677899999999999999988744433333
No 7
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.72 E-value=1.8e-17 Score=174.01 Aligned_cols=162 Identities=13% Similarity=0.187 Sum_probs=126.6
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHh
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALA 286 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~ 286 (1061)
..|.||+||||.||||.+.+++.+|++++.+++.| .++++|+||.|++.+...++ +. ...+++.+.++|+
T Consensus 19 ~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~-----l~--~~~~~~~~~~~i~ 91 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYP-----FS--EAQSKGDILQRLR 91 (199)
T ss_dssp CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEEC-----TT--SCCCHHHHHHHHH
T ss_pred CCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEe-----cC--CcCCHHHHHHHHH
Confidence 57899999999999999999999999999999999 48999999999999887554 21 2246788999999
Q ss_pred cCCCCC--CcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCCCCCCeeEEEEEecCCchhhhh
Q psy17515 287 NVKGDN--VANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEM 364 (1061)
Q Consensus 287 ~l~~~G--~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~~~~~VrIfTigIG~~~d~~~L 364 (1061)
.+...| +|+++.||..|.+.+..... +..++..++|||||||...+. ......+|+||+||||.+++..+|
T Consensus 92 ~l~~~gg~~T~~~~aL~~a~~~l~~~~~-g~r~~~~~~iillTDG~~~d~------v~~~~~~v~v~~iGiG~~~~~~~L 164 (199)
T 3zqk_A 92 EIRYQGGNRTNTGLALRYLSDHSFLVSQ-GDREQAPNLVYMVTGNPASDE------IKRLPGDIQVVPIGVGPNANVQEL 164 (199)
T ss_dssp HCCCCCCSCCCHHHHHHHCCCCCTCGGG-TCCTTSCEEEEEEECSCCSSC------CCCCCTTEEEEEEEESTTCCHHHH
T ss_pred hCcCCCCCcChHHHHHHHHHHHhhCccc-CCCCCCCeEEEEEeCCCCchH------HHHHhCCCEEEEEEcCCCCCHHHH
Confidence 997544 49999999999885432211 122346789999999987653 111346899999999999999999
Q ss_pred hhhhccCCccceeeeccccccce
Q psy17515 365 KQMACSNKGYFEFIKNTDRLRMK 387 (1061)
Q Consensus 365 ~~IA~~ngG~y~~I~~~~dv~e~ 387 (1061)
+.||. .++. +.+.+.+++...
T Consensus 165 ~~iA~-~~~~-~~~~~~~~L~~~ 185 (199)
T 3zqk_A 165 ERIGW-PNAP-ILIQDFETLPRE 185 (199)
T ss_dssp HHHHT-TSCC-EEESCTTTHHHH
T ss_pred HHHhC-CCce-EEeCCHHHHHHH
Confidence 99998 3333 367776665543
No 8
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.72 E-value=1.2e-17 Score=174.01 Aligned_cols=166 Identities=11% Similarity=0.163 Sum_probs=128.1
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC-CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~-~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
.|.||+||||+||||.+.+++.+|++++.+++.|. ++++|+|+.|++.+....+. . ...+++.+..+|+.+.
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l-~------~~~~~~~~~~~i~~l~ 76 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTF-K------EFQNNPNPRSLVKPIT 76 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECH-H------HHHHSCCHHHHHTTCC
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEec-C------CcCCHHHHHHHHHhCc
Confidence 57999999999999999999999999999999996 57899999999998765431 1 1134567889999997
Q ss_pred -CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC-cHH---HHHHhhCCCCCCeeEEEEEecCCch----
Q psy17515 290 -GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS-AFK---EVFKHYNWPHMPVRLFSYLIGKSSN---- 360 (1061)
Q Consensus 290 -~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~-~~~---~i~~~~n~~~~~VrIfTigIG~~~d---- 360 (1061)
.+|+|++..||..|.+.+..... +..++..++|||+|||.++ +.. +..+.+. ..+|+||++|||.+.+
T Consensus 77 ~~~g~T~~~~aL~~a~~~l~~~~~-~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~~--~~gi~v~~igvG~~~~~~~~ 153 (194)
T 1mf7_A 77 QLLGRTHTATGIRKVVRELFNITN-GARKNAFKILVVITDGEKFGDPLGYEDVIPEAD--REGVIRYVIGVGDAFRSEKS 153 (194)
T ss_dssp CCCSCBCHHHHHHHHHHTTTSGGG-TCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHH--HTTEEEEEEEESGGGCSHHH
T ss_pred CCCCCchHHHHHHHHHHHhcCccc-CCCCCCCeEEEEEcCCCCCCCchhhHHHHHHHH--HCCCEEEEEEeccccccccc
Confidence 48999999999999975533211 1123467899999999987 432 2333332 4579999999998864
Q ss_pred hhhhhhhhccC-Cccceeeeccccccc
Q psy17515 361 YAEMKQMACSN-KGYFEFIKNTDRLRM 386 (1061)
Q Consensus 361 ~~~L~~IA~~n-gG~y~~I~~~~dv~e 386 (1061)
...|+.||..+ +|.++.+.+.+++..
T Consensus 154 ~~~L~~iA~~~~~~~~~~~~~~~~l~~ 180 (194)
T 1mf7_A 154 RQELNTIASKPPRDHVFQVNNFEALKT 180 (194)
T ss_dssp HHHHHHHSCSSHHHHEEEESSGGGGGG
T ss_pred HHHHHHHhCCCCcccEEEeCCHHHHHH
Confidence 78999999986 477777877665543
No 9
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.71 E-value=6.4e-17 Score=166.61 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=110.0
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
.+.||+||||.||||.+.+++.+|+++..+++.|. ++++|+||.|++.+....+ +......+++.+.++|+.
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~-----l~~~~~~~~~~~~~~i~~ 90 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWD-----LQSPNAVDKQLAAHAVLD 90 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEEC-----TTSGGGSCHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEe-----CCCCCccCHHHHHHHHHh
Confidence 47999999999999999999999999999999996 3599999999999886554 222222378889999999
Q ss_pred CC-CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH---HHHhhCCCCCCeeEEEEEecCCchhhh
Q psy17515 288 VK-GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE---VFKHYNWPHMPVRLFSYLIGKSSNYAE 363 (1061)
Q Consensus 288 l~-~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~---i~~~~n~~~~~VrIfTigIG~~~d~~~ 363 (1061)
+. .+|+|++..||..|.+.+..... +..+...++|||+|||.++...+ ..+.+. ..+|+||++|||.+.+..+
T Consensus 91 l~~~~g~T~~~~aL~~a~~~l~~~~~-g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~--~~gi~v~~igvG~~~~~~~ 167 (178)
T 2xgg_A 91 MPYKKGSTNTSDGLKACKQILFTGSR-PGREHVPKLVIGMTDGESDSDFRTVRAAKEIR--ELGGIVTVLAVGHYVAAAL 167 (178)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHCCC-TTCTTSCEEEEEEESSCCCHHHHHSHHHHHHH--HTTCEEEEEECC-------
T ss_pred CCCCCCCccHHHHHHHHHHHhcCccc-CCCCCCCEEEEEEcCCCCCCCccHHHHHHHHH--HCCCEEEEEEcCCcCCHHH
Confidence 97 78899999999999998755322 11235678999999999997633 333333 4579999999999988887
Q ss_pred hh
Q psy17515 364 MK 365 (1061)
Q Consensus 364 L~ 365 (1061)
|+
T Consensus 168 l~ 169 (178)
T 2xgg_A 168 VP 169 (178)
T ss_dssp --
T ss_pred Hh
Confidence 75
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.70 E-value=1e-16 Score=170.98 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=128.2
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHh
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALA 286 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~ 286 (1061)
..+.||+||||+||||. .++.+|.++..+++.|. ++++|+||.|++.+....+ + ....++..+.++|+
T Consensus 20 ~~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~-----l--~~~~~~~~~~~~i~ 90 (223)
T 2b2x_A 20 STQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFN-----L--NKYSSTEEVLVAAN 90 (223)
T ss_dssp --CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEEC-----T--TTCCSHHHHHHHHT
T ss_pred CCcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEe-----c--CCCCCHHHHHHHHH
Confidence 35799999999999998 48999999999999985 7999999999999886554 2 12346788899999
Q ss_pred cCCCCC--CcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH---HHHHhhCCCCCCeeEEEEEecCCch-
Q psy17515 287 NVKGDN--VANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK---EVFKHYNWPHMPVRLFSYLIGKSSN- 360 (1061)
Q Consensus 287 ~l~~~G--~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~---~i~~~~n~~~~~VrIfTigIG~~~d- 360 (1061)
.+.+.| +|++..||..|.+.+..... +..+...++|||||||.++.+. +..+.+. ..+|+||++|+|.+.+
T Consensus 91 ~l~~~gG~~T~~~~aL~~a~~~l~~~~~-~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~--~~gi~v~~igvG~~~~~ 167 (223)
T 2b2x_A 91 KIVQRGGRQTMTALGIDTARKEAFTEAR-GARRGVKKVMVIVTDGESHDNYRLKQVIQDCE--DENIQRFSIAILGHYNR 167 (223)
T ss_dssp TCCCCCCSSCCHHHHHHHHHHTTSSGGG-TCCTTSEEEEEEEESSCCTTGGGHHHHHHHHH--TTTEEEEEEEECGGGC-
T ss_pred hhhccCCCCccHHHHHHHHHHHhcCccc-CCCCCCCeEEEEEcCCCCCCCccHHHHHHHHH--HCCCEEEEEEecCcccc
Confidence 987554 49999999999987432111 1123467899999999998753 3444443 5689999999998754
Q ss_pred --------hhhhhhhhcc-CCccceeeeccccccc
Q psy17515 361 --------YAEMKQMACS-NKGYFEFIKNTDRLRM 386 (1061)
Q Consensus 361 --------~~~L~~IA~~-ngG~y~~I~~~~dv~e 386 (1061)
...|+.||.. ++|.|+.+.+.+++..
T Consensus 168 ~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~ 202 (223)
T 2b2x_A 168 GNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVT 202 (223)
T ss_dssp --CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGG
T ss_pred ccccchhHHHHHHHHhCCCchhcEEEeCCHHHHHH
Confidence 4789999998 8899998887666654
No 11
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.70 E-value=3.4e-17 Score=170.74 Aligned_cols=166 Identities=13% Similarity=0.194 Sum_probs=128.4
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc-CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcC
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTL-GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANV 288 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL-~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l 288 (1061)
..|.||+||||+||||.+..+..++.+++.+++.| .++++|+|+.|++.+....+. . ...++..+.++|+.+
T Consensus 7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~-~------~~~~~~~~~~~i~~l 79 (198)
T 1n3y_A 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTF-E------EFRRSSNPLSLLASV 79 (198)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECH-H------HHHHCSSGGGGGTTC
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEec-C------ccCCHHHHHHHHhcC
Confidence 36799999999999999989999999999999999 699999999999998765431 1 123445677788887
Q ss_pred C-CCCCcchHHHHHHHHHH-HHhcccCCCCCCCceEEEEEeCCCCC-cH---HHHHHhhCCCCCCeeEEEEEecCCc---
Q psy17515 289 K-GDNVANFTGALATAFEI-LHKYNRTNQGCQCNQAIMLVSSGPPS-AF---KEVFKHYNWPHMPVRLFSYLIGKSS--- 359 (1061)
Q Consensus 289 ~-~~G~Tnl~~AL~~A~~~-L~~~~~~~~~~~~~~~IvLlTDG~~~-~~---~~i~~~~n~~~~~VrIfTigIG~~~--- 359 (1061)
. ++|+|++..||..|.+. +..... ..+...++|||+|||.++ +. .++.+... ..+|+||++|||.+.
T Consensus 80 ~~~~g~T~~~~al~~a~~~l~~~~~~--~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~--~~gi~i~~igvG~~~~~~ 155 (198)
T 1n3y_A 80 HQLQGFTYTATAIQNVVHRLFHASYG--ARRDAAKILIVITDGKKEGDSLDYKDVIPMAD--AAGIIRYAIGVGLAFQNR 155 (198)
T ss_dssp CCCCSCBCHHHHHHHHHTTTTSGGGT--CCTTSEEEEEEEESSCCBSCSSCHHHHHHHHH--HTTCEEEEEEESGGGGSS
T ss_pred cCCCCCchHHHHHHHHHHHHhCcccC--CCCCCceEEEEECCCCCCCCcccHHHHHHHHH--HCCCEEEEEEcccccccc
Confidence 5 67899999999999954 443221 123467899999999987 32 34444333 457999999999986
Q ss_pred -hhhhhhhhhccCCccc-eeeeccccccc
Q psy17515 360 -NYAEMKQMACSNKGYF-EFIKNTDRLRM 386 (1061)
Q Consensus 360 -d~~~L~~IA~~ngG~y-~~I~~~~dv~e 386 (1061)
+...|+.||..++|.| +.+.+.+++..
T Consensus 156 ~~~~~L~~iA~~~~g~~~~~~~~~~~l~~ 184 (198)
T 1n3y_A 156 NSWKELNDIASKPSQEHIFKVEDFDALKD 184 (198)
T ss_dssp TTHHHHHHHSCSSSGGGEEEESSGGGGGG
T ss_pred ccHHHHHHHHcCCCcccEEEeCCHHHHHH
Confidence 6899999999999987 66776665543
No 12
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.69 E-value=6.7e-17 Score=171.13 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=127.2
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
.|.||+||||+||||. .++.+|.++..+++.|. ++++|+||.|++.+....| + ....++..+.++|+.
T Consensus 6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~-----l--~~~~~~~~~~~~i~~ 76 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFN-----L--NKYSSTEEVLVAAKK 76 (213)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEEC-----T--TTCSSHHHHHHHHHT
T ss_pred CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEe-----c--cccCCHHHHHHHHHh
Confidence 4899999999999998 58999999999999885 7999999999999886554 2 123467888999999
Q ss_pred CCCC-C-CcchHHHHHHHHHHH-HhcccCCCCCCCceEEEEEeCCCCCcHH---HHHHhhCCCCCCeeEEEEEecCCch-
Q psy17515 288 VKGD-N-VANFTGALATAFEIL-HKYNRTNQGCQCNQAIMLVSSGPPSAFK---EVFKHYNWPHMPVRLFSYLIGKSSN- 360 (1061)
Q Consensus 288 l~~~-G-~Tnl~~AL~~A~~~L-~~~~~~~~~~~~~~~IvLlTDG~~~~~~---~i~~~~n~~~~~VrIfTigIG~~~d- 360 (1061)
+.+. | +|++..||..|.+.+ ..... ..+...++|||+|||.++... +..+.+. ..+|+||++|+|.+.+
T Consensus 77 l~~~~G~~T~~~~aL~~a~~~l~~~~~~--~r~~~~~~iillTDG~~~~~~~~~~~~~~~~--~~gi~i~~igig~~~~~ 152 (213)
T 1pt6_A 77 IVQRGGRQTMTALGTDTARKEAFTEARG--ARRGVKKVMVIVTDGESHDNHRLKKVIQDCE--DENIQRFSIAILGSYNR 152 (213)
T ss_dssp CCCCCCSSCCHHHHHHHHHHTTTSGGGT--CCTTCEEEEEEEESSCCSCSHHHHHHHHHHH--HTTEEEEEEEECHHHHH
T ss_pred ccCCCCCcccHHHHHHHHHHHhcCcccC--CCCCCCeEEEEEcCCCCCCCccHHHHHHHHH--HCCCEEEEEEecccccc
Confidence 9754 4 489999999999874 32211 123467899999999998753 2333333 4579999999998654
Q ss_pred --------hhhhhhhhcc-CCccceeeeccccccc
Q psy17515 361 --------YAEMKQMACS-NKGYFEFIKNTDRLRM 386 (1061)
Q Consensus 361 --------~~~L~~IA~~-ngG~y~~I~~~~dv~e 386 (1061)
...|+.||.. ++|.|+.+.+.+++..
T Consensus 153 ~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~ 187 (213)
T 1pt6_A 153 GNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVT 187 (213)
T ss_dssp TTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGG
T ss_pred ccccchhhHHHHHHHhCCCchhcEEEeCCHHHHHH
Confidence 4789999998 6788888887766654
No 13
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.69 E-value=2.6e-16 Score=163.35 Aligned_cols=164 Identities=15% Similarity=0.189 Sum_probs=127.7
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
.|.||+||||+||||.+.+++.+|+++..+++.|. .+++|+||.|++.+....|. . ...+++.+..+|+.
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l-----~--~~~~~~~~~~~i~~ 76 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPW-----N--VVPEKAHLLSLVDV 76 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECT-----T--CCCCHHHHHHHHHT
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEec-----C--CCCCHHHHHHHHHh
Confidence 58899999999999999999999999999999996 34899999999998865441 1 12467889999999
Q ss_pred CCC-CCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH-HHHHHhhCCCCCCeeEEEEEecCCchhhhhh
Q psy17515 288 VKG-DNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF-KEVFKHYNWPHMPVRLFSYLIGKSSNYAEMK 365 (1061)
Q Consensus 288 l~~-~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~-~~i~~~~n~~~~~VrIfTigIG~~~d~~~L~ 365 (1061)
+.. +|+|+++.||..|.+.+...... ..+...+.||+||||.+++. .+..+.+. ..+|+||++|+|.+.+...|+
T Consensus 77 l~~~~g~T~~~~aL~~a~~~l~~~~~g-~r~~~~~~vivltdg~~~~~~~~~~~~~~--~~gi~v~~igvG~~~~~~~L~ 153 (189)
T 1atz_A 77 MQREGGPSQIGDALGFAVRYLTSEMHG-ARPGASKAVVILVTDVSVDSVDAAADAAR--SNRVTVFPIGIGDRYDAAQLR 153 (189)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCCTT-CCTTSEEEEEEEECSCCSSCCHHHHHHHH--HTTEEEEEEEESSSSCHHHHH
T ss_pred CcCCCCcchHHHHHHHHHHHHhccccC-CCCCCCcEEEEEeCCCCCchHHHHHHHHH--HCCCEEEEEEcCCcCCHHHHH
Confidence 974 78999999999999988764321 12335667888998887643 33333333 457999999999999999999
Q ss_pred hhhccCCcc-ceeeeccccc
Q psy17515 366 QMACSNKGY-FEFIKNTDRL 384 (1061)
Q Consensus 366 ~IA~~ngG~-y~~I~~~~dv 384 (1061)
.||..+++. ++.+.+.+++
T Consensus 154 ~iA~~~~~~~~~~~~~~~~~ 173 (189)
T 1atz_A 154 ILAGPAGDSNVVKLQRIEDL 173 (189)
T ss_dssp HHTGGGGGGGCEEESSTTHH
T ss_pred HHHCCCcccCEEEecChhhH
Confidence 999988764 4455554443
No 14
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.69 E-value=7.1e-17 Score=193.06 Aligned_cols=177 Identities=18% Similarity=0.257 Sum_probs=139.3
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHh
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALA 286 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~ 286 (1061)
..+.||+||||.||||.+.+++.+|+++..+++.| .++|+|+||+|++++..++| +......+++.+..+|+
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~-----l~~~~~~~~~~~~~~l~ 81 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMS-----VLNDNSRDMTEVISSLE 81 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEEC-----TTSGGGGCHHHHHHHHH
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEe-----ccCCCCCCHHHHHHHHH
Confidence 46899999999999999999999999999999998 79999999999999887654 33333457899999999
Q ss_pred cCCCC-----CCcchHHHHHHHHHHHHhcccCCC-----CCCCceEEEEEeCCCCCcH---HHHHHhhC-------CCCC
Q psy17515 287 NVKGD-----NVANFTGALATAFEILHKYNRTNQ-----GCQCNQAIMLVSSGPPSAF---KEVFKHYN-------WPHM 346 (1061)
Q Consensus 287 ~l~~~-----G~Tnl~~AL~~A~~~L~~~~~~~~-----~~~~~~~IvLlTDG~~~~~---~~i~~~~n-------~~~~ 346 (1061)
.+.+. |+|++..||+.|.++|........ .....++|||||||.++.+ ....+... ....
T Consensus 82 ~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (509)
T 2odp_A 82 NANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRND 161 (509)
T ss_dssp TCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGG
T ss_pred hcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccC
Confidence 99754 899999999999999965432110 0124579999999988753 22222211 1256
Q ss_pred CeeEEEEEecCC-chhhhhhhhhccCCcc--ceeeeccccccceeeee
Q psy17515 347 PVRLFSYLIGKS-SNYAEMKQMACSNKGY--FEFIKNTDRLRMKVFNY 391 (1061)
Q Consensus 347 ~VrIfTigIG~~-~d~~~L~~IA~~ngG~--y~~I~~~~dv~e~v~~y 391 (1061)
+|+||+||||.+ .+..+|+.||..++|. ++.+.+.+++...+...
T Consensus 162 ~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i 209 (509)
T 2odp_A 162 YLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHM 209 (509)
T ss_dssp GEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhh
Confidence 899999999998 9999999999999997 77788777666554443
No 15
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.68 E-value=7.7e-17 Score=166.25 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=121.1
Q ss_pred CceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCC-CCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC-
Q psy17515 212 PKDIVILLDASSTLSTKHRNLARATINVILDTLGS-NDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK- 289 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~-~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~- 289 (1061)
|.||+||||.||||.+.+++.+|++++.+++.|.+ +++|+||.|++.+....| +.. ..+.+.+..+++.+.
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~-----l~~--~~~~~~~~~~~~~i~~ 74 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFD-----FSD--YVKRKDPDALLKHVKH 74 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEEC-----HHH--HHHHCCHHHHHTTCCC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEc-----Ccc--cCCHHHHHHHHHhccc
Confidence 78999999999999999999999999999999965 469999999999876543 111 123345666777775
Q ss_pred CCCCcchHHHHHHHHHH-HHhcccCCCCCCCceEEEEEeCCCCCcHHHHHHhhCCCCCCeeEEEEEecCCch----hhhh
Q psy17515 290 GDNVANFTGALATAFEI-LHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSN----YAEM 364 (1061)
Q Consensus 290 ~~G~Tnl~~AL~~A~~~-L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~i~~~~n~~~~~VrIfTigIG~~~d----~~~L 364 (1061)
..|+|+++.||..|.+. +..... ..++..++|||+|||.++...... ...+|+||++|||...+ ..+|
T Consensus 75 ~~g~T~~~~aL~~a~~~~~~~~~g--~r~~~~~~iillTDG~~~~~~~~~-----~~~~i~i~~igvG~~~~~~~~~~~L 147 (179)
T 1mjn_A 75 MLLLTNTFGAINYVATEVFREELG--ARPDATKVLIIITDGEATDSGNID-----AAKDIIRYIIGIGKHFQTKESQETL 147 (179)
T ss_dssp CCBCCCHHHHHHHHHHHTSSGGGT--CCTTSEEEEEEEESSCCSSCSCCG-----GGTTSEEEEEEESGGGCSHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHhcccccC--CCCCCCeEEEEEcCCCCCCCcchH-----HHCCCEEEEEEccccccccccHHHH
Confidence 36899999999999964 433221 123467899999999998653221 24579999999998755 4889
Q ss_pred hhhhccCCcc-ceeeecccccc
Q psy17515 365 KQMACSNKGY-FEFIKNTDRLR 385 (1061)
Q Consensus 365 ~~IA~~ngG~-y~~I~~~~dv~ 385 (1061)
+.||..++|. ++.+.+.+++.
T Consensus 148 ~~iA~~~~~~~~~~~~~~~~L~ 169 (179)
T 1mjn_A 148 HKFASKPASEFVKILDTFEKLK 169 (179)
T ss_dssp GGGSCSCHHHHEEEESSGGGSC
T ss_pred HHHhCCccHhcEEEeCCHHHHH
Confidence 9999998874 46666655543
No 16
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.68 E-value=1.8e-16 Score=166.21 Aligned_cols=163 Identities=15% Similarity=0.193 Sum_probs=124.8
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
.|.||+||||+||||. .++.+|.++..+++.|. ++++|+||.|++.+....| +. ...++..+.++|+.
T Consensus 5 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~-----l~--~~~~~~~~~~~i~~ 75 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFN-----LN--TYKTKEEMIVATSQ 75 (200)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEEC-----TT--TCSSHHHHHHHHHH
T ss_pred CcccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEe-----CC--CcCCHHHHHHHHHh
Confidence 4789999999999998 49999999999999996 6899999999999886544 22 22467889999999
Q ss_pred CCCC-C-CcchHHHHHHHHHH-HHhcccCCCCCCCceEEEEEeCCCCCcHH---HHHHhhCCCCCCeeEEEEEec-----
Q psy17515 288 VKGD-N-VANFTGALATAFEI-LHKYNRTNQGCQCNQAIMLVSSGPPSAFK---EVFKHYNWPHMPVRLFSYLIG----- 356 (1061)
Q Consensus 288 l~~~-G-~Tnl~~AL~~A~~~-L~~~~~~~~~~~~~~~IvLlTDG~~~~~~---~i~~~~n~~~~~VrIfTigIG----- 356 (1061)
+.+. | +|++..||..|.+. +..... ..+...++|||+|||.++... +..+.+. ..+|+||++|+|
T Consensus 76 l~~~~G~~T~~~~al~~a~~~~~~~~~g--~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~--~~gi~i~~igvg~~~~~ 151 (200)
T 1v7p_C 76 TSQYGGDLTNTFGAIQYARKYAYSAASG--GRRSATKVMVVVTDGESHDGSMLKAVIDQCN--HDNILRFGIAVLGYLNR 151 (200)
T ss_dssp CCCCCCSCCCHHHHHHHHHHHTTSGGGT--CCTTSEEEEEEEESSCCSCGGGHHHHHHHHH--HTTEEEEEEEECHHHHH
T ss_pred hhccCCCCCcHHHHHHHHHHhhcccccC--CCCCCCeEEEEEccCCCCCcccHHHHHHHHH--HCCCEEEEEEecccccc
Confidence 9764 4 59999999999986 443221 123467899999999998653 3333333 467999999995
Q ss_pred CCch----hhhhhhhhccCCccc-eeeeccccccc
Q psy17515 357 KSSN----YAEMKQMACSNKGYF-EFIKNTDRLRM 386 (1061)
Q Consensus 357 ~~~d----~~~L~~IA~~ngG~y-~~I~~~~dv~e 386 (1061)
.+.+ ...|+.||..++|.| +.+.+..++..
T Consensus 152 ~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~ 186 (200)
T 1v7p_C 152 NALDTKNLIKEIKAIASIPTERYFFNVSDEAALLE 186 (200)
T ss_dssp TTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHH
T ss_pred cccchhhHHHHHHHHhCCccHhcEEEcCCHHHHHH
Confidence 3344 567999999998865 56666665543
No 17
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.68 E-value=2.8e-18 Score=177.92 Aligned_cols=157 Identities=13% Similarity=0.157 Sum_probs=124.0
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc-CCCCEEEEEEEcC-ceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTL-GSNDFVNIFTFSD-VTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL-~~~D~v~Vv~Fs~-~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
..|.+|+||||+||||.|.+++.+|.++..+++.+ .++|+|+|+.|++ .+..+.| .+ .+...++.+|+.
T Consensus 3 ~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~--------~~-~~~~~~~~~i~~ 73 (189)
T 2x31_A 3 MSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQ--------PS-RSLTQTKRQLQG 73 (189)
T ss_dssp SSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTT--------TC-SCHHHHHHHHHH
T ss_pred CCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecC--------CC-CCHHHHHHHHhc
Confidence 46899999999999999999999999999999988 8999999999997 4443222 22 367889999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH-----------HHHhhC-CCCCCeeEEEEEe
Q psy17515 288 VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE-----------VFKHYN-WPHMPVRLFSYLI 355 (1061)
Q Consensus 288 l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~-----------i~~~~n-~~~~~VrIfTigI 355 (1061)
+.++|+|++..||..|++++..... ....+.|||+|||.++.+.. +.+... ....+|+||+||+
T Consensus 74 l~~~g~T~~~~al~~a~~~l~~~~~----~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~ 149 (189)
T 2x31_A 74 LPGGGGTPLASGMEMAMVTAKQARS----RGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDT 149 (189)
T ss_dssp CCCCBCCCCHHHHHHHHHHHHTCTT----TCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC----CCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEec
Confidence 9999999999999999999987432 23567999999999875311 000011 1345699999999
Q ss_pred cCCchhhhhhhhhccCCccceeeec
Q psy17515 356 GKSSNYAEMKQMACSNKGYFEFIKN 380 (1061)
Q Consensus 356 G~~~d~~~L~~IA~~ngG~y~~I~~ 380 (1061)
|.. +...|+.||..++|.|+++.+
T Consensus 150 g~~-~~~~L~~iA~~~~G~~~~~~~ 173 (189)
T 2x31_A 150 AMR-PNPALVDLARTMDAHYIALPR 173 (189)
T ss_dssp HHS-SCSSSCSTTTEEEESSTTTHH
T ss_pred CCC-CHHHHHHHHHhcCCeEEECCC
Confidence 976 777899999999999888754
No 18
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.68 E-value=4.1e-16 Score=160.57 Aligned_cols=159 Identities=14% Similarity=0.163 Sum_probs=118.1
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc-CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcC
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTL-GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANV 288 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL-~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l 288 (1061)
..|.||+||||+||||.+ .+...+.+++.++..| .++++|+||.|++.+....| +.. +++.++.+|+.+
T Consensus 5 ~~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~-----l~~----~~~~~~~~i~~l 74 (185)
T 3n2n_F 5 YGGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMK-----LTE----DREQIRQGLEEL 74 (185)
T ss_dssp BSEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEE-----EEC----CHHHHHHHHHHH
T ss_pred CCCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEec-----cCC----CHHHHHHHHHHH
Confidence 468999999999999987 4777777777777764 67899999999999887553 221 455666666655
Q ss_pred ---CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH-----HHHHhhCCCCCCeeEEEEEecCCch
Q psy17515 289 ---KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK-----EVFKHYNWPHMPVRLFSYLIGKSSN 360 (1061)
Q Consensus 289 ---~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~-----~i~~~~n~~~~~VrIfTigIG~~~d 360 (1061)
.++|+|++..||..|.+.+...... +....++|||+|||.++... +..+... ..+|+||++|+| +.+
T Consensus 75 ~~~~~~g~T~~~~al~~a~~~l~~~~~~--~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~--~~gi~i~~igvg-~~~ 149 (185)
T 3n2n_F 75 QKVLPGGDTYMHEGFERASEQIYYENRQ--GYRTASVIIALTDGELHEDLFFYSEREANRSR--DLGAIVYAVGVK-DFN 149 (185)
T ss_dssp HTCCCCSCCCHHHHHHHHHHHHHHHHTT--CBCEEEEEEEEECCCCCHHHHHHHHHHHHHHH--HTTEEEEEEECS-SCC
T ss_pred hhhcCCCCccHHHHHHHHHHHHhhcccc--CCCCCcEEEEEcCCCCCCCcccchHHHHHHHH--HCCCEEEEEEec-cCC
Confidence 4689999999999999987543322 12357899999999998654 2333332 457999999999 789
Q ss_pred hhhhhhhhccCCccceeeec-cccc
Q psy17515 361 YAEMKQMACSNKGYFEFIKN-TDRL 384 (1061)
Q Consensus 361 ~~~L~~IA~~ngG~y~~I~~-~~dv 384 (1061)
...|+.||... |.++.+.+ ..++
T Consensus 150 ~~~L~~iA~~~-~~~~~~~~~~~~L 173 (185)
T 3n2n_F 150 ETQLARIADSK-DHVFPVNDGFQAL 173 (185)
T ss_dssp HHHHTTTSSSG-GGEEEHHHHHHHH
T ss_pred HHHHHHHhCCC-CCeEEeccHHHHH
Confidence 99999999765 44445543 4443
No 19
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.67 E-value=3.9e-16 Score=160.33 Aligned_cols=161 Identities=13% Similarity=0.142 Sum_probs=117.2
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHH-cCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDT-LGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdt-L~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~ 289 (1061)
.|.||+||||+||||.+..+. .+..++.++.. +.++|+|+|+.|++.+....|. . .+......+.+.+..+.
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~-----~-~~~~~~~~~l~~l~~~~ 77 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPL-----T-GDRGKISKGLEDLKRVS 77 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEE-----E-CCHHHHHHHHHHHHTCC
T ss_pred CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECC-----C-CCHHHHHHHHHhcccCC
Confidence 589999999999999986553 34444444444 4589999999999998865542 1 23344444445555556
Q ss_pred CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH-----HHHhhCCCCCCeeEEEEEecCCchhhhh
Q psy17515 290 GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE-----VFKHYNWPHMPVRLFSYLIGKSSNYAEM 364 (1061)
Q Consensus 290 ~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~-----i~~~~n~~~~~VrIfTigIG~~~d~~~L 364 (1061)
+.|+|++..||..|.+.+..... ....+.|||+|||.++.... ..+.. ...+|+||++|+| +.+...|
T Consensus 78 ~~g~T~~~~al~~a~~~l~~~~~----~~~~~~iiliTDG~~~~~~~~~~~~~~~~~--~~~~i~i~~igvg-~~~~~~L 150 (182)
T 1shu_X 78 PVGETYIHEGLKLANEQIQKAGG----LKTSSIIIALTDGKLDGLVPSYAEKEAKIS--RSLGASVYCVGVL-DFEQAQL 150 (182)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHTG----GGSCEEEEEEECCCCCTTHHHHHHHHHHHH--HHTTCEEEEEECS-SCCHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhccC----CCCCeEEEEECCCCcCCCCchhHHHHHHHH--HhCCCEEEEEeCC-cCCHHHH
Confidence 88999999999999999987531 23567999999999875431 22222 2457999999999 5788899
Q ss_pred hhhhccCCccceeeecccccc
Q psy17515 365 KQMACSNKGYFEFIKNTDRLR 385 (1061)
Q Consensus 365 ~~IA~~ngG~y~~I~~~~dv~ 385 (1061)
+.||..++|.|....+..++.
T Consensus 151 ~~ia~~~~~~~~~~~~~~~L~ 171 (182)
T 1shu_X 151 ERIADSKEQVFPVKGGFQALK 171 (182)
T ss_dssp HHHSSSGGGEEESSSTTHHHH
T ss_pred HHHhCCCCceEEccCCHHHHH
Confidence 999999988877664544443
No 20
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.65 E-value=2.8e-16 Score=187.14 Aligned_cols=173 Identities=13% Similarity=0.195 Sum_probs=133.4
Q ss_pred CceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcC
Q psy17515 212 PKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANV 288 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l 288 (1061)
|.||+||||+||||.+.+++.+|+++..+++.|. .+++|+||+|++.+....+ +......+++.+.++|+.+
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l 75 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-----VSEADSSNADWVTKQLNEI 75 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEEC-----TTSGGGGCHHHHHHHHHHC
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeec-----cccccccCHHHHHHHHHhC
Confidence 5799999999999999999999999999999764 5899999999999876542 3333446788899999998
Q ss_pred C-----CCCCcchHHHHHHHHHHHHhccc--CCCCCCCceEEEEEeCCCCCc---HHHH---HHhh--------CCCCCC
Q psy17515 289 K-----GDNVANFTGALATAFEILHKYNR--TNQGCQCNQAIMLVSSGPPSA---FKEV---FKHY--------NWPHMP 347 (1061)
Q Consensus 289 ~-----~~G~Tnl~~AL~~A~~~L~~~~~--~~~~~~~~~~IvLlTDG~~~~---~~~i---~~~~--------n~~~~~ 347 (1061)
. .+|+|++..||..|.++|..... ........++|||||||.++. .... ++.. +....+
T Consensus 76 ~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (497)
T 1rrk_A 76 NYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDY 155 (497)
T ss_dssp CGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGG
T ss_pred cCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcC
Confidence 7 45799999999999999853221 111123567999999998874 2222 2222 112348
Q ss_pred eeEEEEEecCCchhhhhhhhhccCCc--cceeeeccccccceee
Q psy17515 348 VRLFSYLIGKSSNYAEMKQMACSNKG--YFEFIKNTDRLRMKVF 389 (1061)
Q Consensus 348 VrIfTigIG~~~d~~~L~~IA~~ngG--~y~~I~~~~dv~e~v~ 389 (1061)
|+||+||||.+.+...|+.||..++| .|+.+.+.+++...+.
T Consensus 156 i~v~~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~ 199 (497)
T 1rrk_A 156 LDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFY 199 (497)
T ss_dssp EEEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHH
T ss_pred eeEEEecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhh
Confidence 99999999999999999999999999 8888887777665443
No 21
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.64 E-value=5.2e-16 Score=193.84 Aligned_cols=176 Identities=13% Similarity=0.194 Sum_probs=137.3
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHh
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALA 286 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~ 286 (1061)
..+.||+||||.||||.+.+++.+|++++.+++.|. .+|+|+||+|++++..+++ +...+..+++.++++|+
T Consensus 241 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~-----l~~~~~~~~~~~~~~i~ 315 (741)
T 3hrz_D 241 SGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-----VSEADSSNADWVTKQLN 315 (741)
T ss_dssp TCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEEC-----TTSGGGGCHHHHHHHHT
T ss_pred CCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEe-----ecccCCcCHHHHHHHHH
Confidence 357899999999999999999999999999999886 5699999999999887654 33344567889999999
Q ss_pred cCC-----CCCCcchHHHHHHHHHHHHhcccC--CCCCCCceEEEEEeCCCCCcH---HHH---HHhh--------CCCC
Q psy17515 287 NVK-----GDNVANFTGALATAFEILHKYNRT--NQGCQCNQAIMLVSSGPPSAF---KEV---FKHY--------NWPH 345 (1061)
Q Consensus 287 ~l~-----~~G~Tnl~~AL~~A~~~L~~~~~~--~~~~~~~~~IvLlTDG~~~~~---~~i---~~~~--------n~~~ 345 (1061)
.+. ++|+|+++.||..|+++|...... .......++|||||||.++.+ ..+ +... ....
T Consensus 316 ~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~ 395 (741)
T 3hrz_D 316 EINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPRE 395 (741)
T ss_dssp TCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCG
T ss_pred hcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccc
Confidence 997 789999999999999998532211 112236789999999988742 221 1111 1245
Q ss_pred CCeeEEEEEecCCchhhhhhhhhccCCc--cceeeeccccccceeee
Q psy17515 346 MPVRLFSYLIGKSSNYAEMKQMACSNKG--YFEFIKNTDRLRMKVFN 390 (1061)
Q Consensus 346 ~~VrIfTigIG~~~d~~~L~~IA~~ngG--~y~~I~~~~dv~e~v~~ 390 (1061)
.+|+||+||||.+++...|+.||...+| .++.+.+.+++.+.+..
T Consensus 396 ~gi~i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~ 442 (741)
T 3hrz_D 396 DYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQ 442 (741)
T ss_dssp GGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHH
T ss_pred cCeeEEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHH
Confidence 6899999999999999999999999999 47777776666554433
No 22
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=99.55 E-value=3.4e-14 Score=153.48 Aligned_cols=150 Identities=15% Similarity=0.270 Sum_probs=116.7
Q ss_pred eeecccccccccc---cCCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHh
Q psy17515 392 VLVMARPLIMYQT---EHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQK 468 (1061)
Q Consensus 392 ~d~larp~~~~~~---~~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~ 468 (1061)
++...|+||+.+. .+.++|++||.+..+ ++++++++.||++.+ |+++||++++++++.|.+
T Consensus 93 ~~~~~r~~f~~a~~~~~~~~~is~p~~~~~~----------g~~~i~~~~pi~~~~------g~~~Gvl~~~i~l~~l~~ 156 (254)
T 3lif_A 93 LDNSDRSYFRYHRANDDHTLLITGPIQSRTS----------GVWVFVVSRRLETTD------GKFFGVVVATIESEYFST 156 (254)
T ss_dssp CBCTTSHHHHHHHHCCCCCCEEEEEEECTTT----------CCEEEEEEEEEECTT------CCEEEEEEEEECHHHHHH
T ss_pred CCcccHHHHHHHHhCCCCCeEECCceecCCC----------CcEEEEEEeeeeCCC------CCEeEEEEEEECHHHHHH
Confidence 4677899998765 367899999998765 589999999999753 899999999999999999
Q ss_pred hccCCccCCceEEEEEeCCCcEEEc-CCCCcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHH-hcCCCc
Q psy17515 469 LVPQYKLGPNGYSFVVNNNGRIIYH-PDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMI-DQKEGE 546 (1061)
Q Consensus 469 ll~~~klG~~GY~flVd~nG~VL~H-Pdl~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi-~~~~G~ 546 (1061)
++...++|.+||+||+|.+|.+|+| |+... ++. . .+ ..+.++++ .+++|.
T Consensus 157 ~~~~~~~~~~g~~~l~d~~G~ii~~~p~~~~-g~~----~------~~-----------------~~~~~~~~~~~~~g~ 208 (254)
T 3lif_A 157 FYKTFDLGPGGSISLLHSDGRLLIQWPSLQT-GRD----M------AN-----------------MVLFQKALPRSPDGY 208 (254)
T ss_dssp HHTTSCCCTTCEEEEEETTSBEEEEETTCCC-SCB----C------TT-----------------SHHHHTHHHHCSEEE
T ss_pred HHHhcCcCCCcEEEEEeCCCcEEEECCCCcc-CCC----c------cc-----------------chhHHhhhccCCceE
Confidence 9999999999999999999999999 87643 211 0 00 02234454 566666
Q ss_pred eeEEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcchhhhhchH
Q psy17515 547 TEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKE 596 (1061)
Q Consensus 547 ~~~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~~~~~~~~~ 596 (1061)
..+ ...++|.++ .++|.|++++||.|++.+|.++ ++++.
T Consensus 209 ~~~--~~~~~g~~~------~~~~~~i~~~~w~v~v~~~~~e---~~a~~ 247 (254)
T 3lif_A 209 YLT--VSPFDGLTK------YLAYRRVSRYPLVVTVARTEDS---VLSGW 247 (254)
T ss_dssp EEE--ECTTTCCEE------EEEEEECTTSSEEEEEEEECCC---CCCC-
T ss_pred EEe--ccCCCCceE------EEEEEEcCCCCEEEEEEcCHHH---HHHHH
Confidence 421 114577655 7899999999999999999998 55543
No 23
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=99.53 E-value=3.9e-14 Score=156.16 Aligned_cols=159 Identities=21% Similarity=0.344 Sum_probs=118.9
Q ss_pred eeeeccccccccccc-CCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhh
Q psy17515 391 YVLVMARPLIMYQTE-HPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKL 469 (1061)
Q Consensus 391 y~d~larp~~~~~~~-~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~l 469 (1061)
.++...|+||+.+.. +.++|++||.+ + +.++++++.||++. |+++||+++||+++.|.++
T Consensus 119 ~~d~~~~~w~~~a~~~~~~~~s~p~~~--~----------~~~~i~~~~pi~~~-------g~~~Gvl~~~i~l~~l~~~ 179 (291)
T 3li9_A 119 LVHYDSSDYYQLPKTTGKDTLTEPYFY--E----------GIFMVSYDSPIFKN-------GEFAGIAGVDVPLEYVDDV 179 (291)
T ss_dssp CCCTTTSHHHHHHHHHCSCEECCCEEE--T----------TEEEEEEEEEEEET-------TEEEEEEEEEEECHHHHHH
T ss_pred cCCCccchHHHHHHHhCCCEEEccEEe--C----------CEEEEEEEEEEEEC-------CEEEEEEEEEeeHHHHHHH
Confidence 356778999998654 78899999986 2 58999999999863 8999999999999999999
Q ss_pred ccCCccCCceEEEEEeCCCcEEEcCCC-CcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHHhcCCCcee
Q psy17515 470 VPQYKLGPNGYSFVVNNNGRIIYHPDF-RPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETE 548 (1061)
Q Consensus 470 l~~~klG~~GY~flVd~nG~VL~HPdl-~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi~~~~G~~~ 548 (1061)
+...+++.+||+||+|.+|.+|+||+. ..++ +.. +.++ ..+.+..+.+.|..+++|...
T Consensus 180 ~~~~~~~~~g~~~l~d~~G~ii~~~~~~~~~g----~~~-----~~~~-----------~~~~~~~~~~~~~~~~~g~~~ 239 (291)
T 3li9_A 180 ASSIRTFDTGYAFMVSNTGIFLSHPTQKNWIG----EKS-----LSDF-----------DVEEIKNAASDIREGIGGHVE 239 (291)
T ss_dssp HTTCCBTTTBEEEEECTTCBBSCCSSCGGGTT----TCB-----GGGS-----------SCHHHHHHHHHHHTTCCEEEE
T ss_pred HHhCCcCCCeEEEEEeCCCeEEEcCChhHhhC----ccc-----hhhc-----------cchHHHHHHHHHHcCCCceEE
Confidence 999999999999999999999999985 3332 111 1111 014455677788777777642
Q ss_pred EEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcchhhhhchHHHH
Q psy17515 549 FKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEI 599 (1061)
Q Consensus 549 ~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~~~~~~~~~~~I 599 (1061)
+ ....+|.++ .++|.|++.++|.|++.+|.++ ++++...+
T Consensus 240 ~--~~~~~g~~~------~~~~~~i~~~~W~l~~~~p~~~---i~~~~~~~ 279 (291)
T 3li9_A 240 I--KDPITGKTV------IMFYEPVKTGDFSFVLVVPKEE---MLAGVKDL 279 (291)
T ss_dssp E--ECTTTCCEE------EEEEEEETTTTEEEEEEEEHHH---HC------
T ss_pred E--eecCCCcEE------EEEEEEEecCCeEEEEEEcHHH---HHHHHHHH
Confidence 1 113466544 7899999999999999999988 66665544
No 24
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=99.52 E-value=4.2e-14 Score=155.82 Aligned_cols=157 Identities=20% Similarity=0.301 Sum_probs=120.5
Q ss_pred eeeeccccccccccc-CCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhh
Q psy17515 391 YVLVMARPLIMYQTE-HPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKL 469 (1061)
Q Consensus 391 y~d~larp~~~~~~~-~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~l 469 (1061)
.++...|+||+.+.. +.++|++||.+ + +.++++++.||++. |+++||+++||+++.|.++
T Consensus 118 ~~d~~~r~w~~~a~~~~~~~~s~p~~~--~----------~~~~i~~~~pi~~~-------g~~~Gvl~~~i~l~~l~~~ 178 (290)
T 3lib_A 118 LLHYDSSDYYQLPKATEKDVLTEPYFY--E----------GVFMVSYVSPIMKE-------GEFAGIGGVDVSLEYVDEV 178 (290)
T ss_dssp CSCTTTSHHHHHHHHHCSCEECCCEEE--T----------TEEEEEEEEEEEET-------TEEEEEEEEEEEHHHHHHH
T ss_pred cCCCCcchHHHHHHHcCCCEEEcCEEe--C----------CeEEEEEEEEEEEC-------CEEEEEEEEEEeHHHHHHH
Confidence 356778999998654 68899999986 2 48999999999853 8999999999999999999
Q ss_pred ccCCccCCceEEEEEeCCCcEEEcCCC-CcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHHhcCCCcee
Q psy17515 470 VPQYKLGPNGYSFVVNNNGRIIYHPDF-RPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETE 548 (1061)
Q Consensus 470 l~~~klG~~GY~flVd~nG~VL~HPdl-~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi~~~~G~~~ 548 (1061)
+...+++.+||+||+|.+|.||+||+. ..++ +... .++ ..+.+..+.+.|..+++|...
T Consensus 179 ~~~~~~~~~g~~~l~d~~G~ii~~~~~~~~~g----~~~~-----~~~-----------~~~~~~~~~~~~~~~~~g~~~ 238 (290)
T 3lib_A 179 VSKVRTFDTGYAFMVSNSGVILSHPTHKDWIG----KKDL-----YDF-----------GGEELEKASRDIKNGIGGHLE 238 (290)
T ss_dssp HHHCCBTTTBCEEEECTTCBBCCCSSCTTTTT----TCBT-----TTS-----------CCSHHHHHHHHHHTTCCEEEE
T ss_pred HHhCCcCCceEEEEEeCCCeEEEcCCchHhhc----ccch-----hhh-----------cChHHHHHHHHHHcCCCceEE
Confidence 999999999999999999999999984 3332 1110 110 013455677778777777642
Q ss_pred EEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcchhhhhchHH
Q psy17515 549 FKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEE 597 (1061)
Q Consensus 549 ~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~~~~~~~~~~ 597 (1061)
+ ....+|.++ .++|.|++.++|.|++.+|.++ ++++..
T Consensus 239 ~--~~~~~g~~~------~~~~~~i~~~~W~v~~~~p~~~---i~~~~~ 276 (290)
T 3lib_A 239 T--ADPTTGKTV------ILFYEPVETGDFAFVLVVPKEE---MLAGVA 276 (290)
T ss_dssp E--ECSSSCCEE------EEEEEEETTTTEEEEEEEEHHH---HHHHHH
T ss_pred E--eecCCCcEE------EEEEEEEecCCeEEEEEecHHH---HHHHHH
Confidence 1 113566544 7899999999999999999988 555544
No 25
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=99.48 E-value=9.8e-14 Score=151.08 Aligned_cols=151 Identities=16% Similarity=0.223 Sum_probs=113.5
Q ss_pred eeec--cccccccccc-CCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHh
Q psy17515 392 VLVM--ARPLIMYQTE-HPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQK 468 (1061)
Q Consensus 392 ~d~l--arp~~~~~~~-~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~ 468 (1061)
++.. .|+||+.+.. +.++||+||.+..++ +.++++++.||++. |+++||+++||+++.|.+
T Consensus 111 ~d~~~~~~~w~~~a~~~~~~~~s~~~~~~~~~---------~~~~i~~~~pi~~~-------g~~~Gv~~~~i~l~~l~~ 174 (274)
T 3lic_A 111 YDYTDGNWDWWSKAINQVGGYWSKAYFDEGAG---------NVLMITYAVPFGVQ-------PDYFGVTTVDLALDRLPE 174 (274)
T ss_dssp CCTTSSSCHHHHTTTTTSSCEECCCEECTTTT---------CSEEEEEEEEESCT-------TCCCEEEEEEEEGGGHHH
T ss_pred CCCCCCCCcHHHHHHhcCCCEEEeeEEcCCCC---------ceEEEEEEEEEccC-------CEEEEEEEEEEEHHHHHH
Confidence 4666 8999998664 678999999987542 36999999999862 889999999999999999
Q ss_pred hccCCccCCceEEEEEeCCCcEEEcCCCCcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHHhcCCCcee
Q psy17515 469 LVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETE 548 (1061)
Q Consensus 469 ll~~~klG~~GY~flVd~nG~VL~HPdl~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi~~~~G~~~ 548 (1061)
++. . .+||+||+|.+|.||+||+...+.. ++. .++. + ...+.+..+.+.|..+++|...
T Consensus 175 ~~~-~---~~g~~~l~d~~G~ii~~~~~~~~~~---~~~------~~~~--~------~~~~~~~~~~~~~~~~~~g~~~ 233 (274)
T 3lic_A 175 QLG-I---APSRLVVLDDQGRLIFHSDKEKVLA---ASS------SGWL--D------KQNIKNIAFATLLNDGQAGQAS 233 (274)
T ss_dssp HHT-S---CGGGEEEECTTSCEEECSSHHHHTC-------------CCS--C------TTSGGGHHHHHHHHHTCCEEEE
T ss_pred Hhc-c---CCceEEEECCCCCEEEeCCHHHhhc---cch------hhHh--h------cccccHHHHHHHHHcCCCccEE
Confidence 998 5 8899999999999999998654410 111 0100 0 0113445777888888887743
Q ss_pred EEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcc
Q psy17515 549 FKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGY 588 (1061)
Q Consensus 549 ~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~ 588 (1061)
+. ..+|.++ .++|+|+++++|.|++++|.++
T Consensus 234 ~~---~~~g~~~------~~~~~~i~~~~W~l~~~~p~~~ 264 (274)
T 3lic_A 234 FV---DDKGTVY------LASVAEVAKLKWRVVVMVPKHE 264 (274)
T ss_dssp EE---CTTCCEE------EEEEEECTTTCCEEEEEEEHHH
T ss_pred EE---cCCCCEE------EEEEEEeCCCCcEEEEEecHHH
Confidence 21 2266544 7899999999999999999988
No 26
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.1e-13 Score=150.90 Aligned_cols=146 Identities=13% Similarity=0.126 Sum_probs=114.4
Q ss_pred eEEEEEccCCCCCc-----chHHHHHHHHHHHHHH---cCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHH
Q psy17515 214 DIVILLDASSTLST-----KHRNLARATINVILDT---LGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAAL 285 (1061)
Q Consensus 214 dVVILlD~SGSM~g-----~~l~~aK~a~~~iLdt---L~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I 285 (1061)
-+|||||+|+||.. .|++.+|.+++.+++. +.+.|+|+||+|.+....+. .+ ...++..+..+|
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl-------~p-lT~D~~~il~aL 76 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL-------ST-FTAEFGKILAGL 76 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE-------EE-EESCHHHHHHHH
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec-------cC-CcchHHHHHHHh
Confidence 37999999999974 5899999999999985 46899999999987643321 11 124678899999
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH----HHHhhCCCCCCeeEEEEEecCC-ch
Q psy17515 286 ANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE----VFKHYNWPHMPVRLFSYLIGKS-SN 360 (1061)
Q Consensus 286 ~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~----i~~~~n~~~~~VrIfTigIG~~-~d 360 (1061)
+.+.++|+|++..||+.|+..|+.... ....+.||++|||..+..+. +.++.+ +.+|+|++|+||.+ .+
T Consensus 77 ~~l~~~G~T~l~~gL~~A~~aLk~~~~----k~~~~rIIlf~ds~~~~~~~~l~~lak~lk--k~gI~v~vIgFG~~~~n 150 (268)
T 4b4t_W 77 HDTQIEGKLHMATALQIAQLTLKHRQN----KVQHQRIVAFVCSPISDSRDELIRLAKTLK--KNNVAVDIINFGEIEQN 150 (268)
T ss_dssp TTCCCCSCCCHHHHHHHHHHHHHTCSC----TTSEEEEEEEECSCCSSCHHHHHHHHHHHH--HHTEEEEEEEESSCCSS
T ss_pred hhcCcCCCCChHHHHHHHHHHHHhccc----CCCceEEEEEECCCCCCCHHHHHHHHHHHH--HcCCEEEEEEeCCCccc
Confidence 999999999999999999999987543 23567899999987664332 223222 45799999999987 88
Q ss_pred hhhhhhhhccCCc
Q psy17515 361 YAEMKQMACSNKG 373 (1061)
Q Consensus 361 ~~~L~~IA~~ngG 373 (1061)
...|+.++...+|
T Consensus 151 ~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 151 TELLDEFIAAVNN 163 (268)
T ss_dssp CCHHHHHHHHHCS
T ss_pred hHHHHHHHHHhcC
Confidence 8889998776554
No 27
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=99.46 E-value=4.7e-13 Score=141.57 Aligned_cols=151 Identities=24% Similarity=0.355 Sum_probs=114.4
Q ss_pred eeecccccccccc-cCCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhhc
Q psy17515 392 VLVMARPLIMYQT-EHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLV 470 (1061)
Q Consensus 392 ~d~larp~~~~~~-~~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~ll 470 (1061)
++...++||+.+. .+..+|++||.+..+ +.++++++.||++.+ .|+++||+++|++++.|.+++
T Consensus 87 ~~~~~~~w~~~~~~~~~~~~s~~~~~~~~----------~~~~i~~~~pi~~~~-----~g~~~Gvl~~~i~~~~l~~~~ 151 (240)
T 3c8c_A 87 WDPRVRPWYKDAKNAGKLVITAPYADSAS----------GEILVSVATPVKDSA-----TGQFLGSIFYDVSLAELAELV 151 (240)
T ss_dssp CCGGGSHHHHHHHHHTSCEECCCEECTTT----------CCEEEEEEEEEECTT-----TCCEEEEEEEEECHHHHHHHH
T ss_pred CCcccChHHHHHHhcCCcEEeeceEcCCC----------CeEEEEEEEEEEECC-----CCeEEEEEEEEEEHHHHHHHH
Confidence 4666789998755 356899999998754 479999999998642 178999999999999999999
Q ss_pred cCCccCCceEEEEEeCCCcEEEcCCCCcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHHhcCCCceeEE
Q psy17515 471 PQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFK 550 (1061)
Q Consensus 471 ~~~klG~~GY~flVd~nG~VL~HPdl~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi~~~~G~~~~~ 550 (1061)
...++|.+||+||+|.+|.+|+||+...++ ++. .+ +...+ ..+.|..
T Consensus 152 ~~~~~~~~g~~~l~d~~G~ii~~~~~~~~~----~~~------~~-------------------~~~~~-~~~~g~~--- 198 (240)
T 3c8c_A 152 NEVKLFDAGYVFIVSEDGTTIAHPKKEFNG----KPM------SE-------------------FLGES-KINVDTH--- 198 (240)
T ss_dssp TCSCCTTSEEEEEEETTSBEEECSSGGGTT----SBT------HH-------------------HHSCC-SCCCSCE---
T ss_pred HhcccCCceEEEEEcCCCcEEEeCChhHhc----chH------HH-------------------HhHHh-hhhcCce---
Confidence 999999999999999999999999765431 211 11 00001 1123442
Q ss_pred EEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcchhhhhchHHHHH
Q psy17515 551 VKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIK 600 (1061)
Q Consensus 551 ~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~~~~~~~~~~~I~ 600 (1061)
.+..+|.++ .++|.|+++++|.+++++|.++ ++++...++
T Consensus 199 -~~~~~g~~~------~~~~~~~~~~~W~vv~~~p~~~---~~~~~~~~~ 238 (240)
T 3c8c_A 199 -QVIINGKPY------AVSFSDVEGEDWYVGVVIDEEI---AYAALDELR 238 (240)
T ss_dssp -EEEETTEEE------EEEEEECTTSSEEEEEEECHHH---HHHHHHHHH
T ss_pred -EEEECCEEE------EEEEEecCCCCeEEEEEeCHHH---HHHHHHHHh
Confidence 345577654 6789999999999999999988 777666654
No 28
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.43 E-value=9.1e-13 Score=137.67 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=108.1
Q ss_pred ceEEEEEccCCCCCc-----chHHHHHHHHHHHHHHc---CCCCEEEEEEEcCc-eeeeeccccccccccCHHhHHHHHH
Q psy17515 213 KDIVILLDASSTLST-----KHRNLARATINVILDTL---GSNDFVNIFTFSDV-TVELVPCYREMLVQATDENKRTLKA 283 (1061)
Q Consensus 213 kdVVILlD~SGSM~g-----~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~-~~~~~~c~~~~lv~at~~n~~~lk~ 283 (1061)
..++|+||.|+||.. .|++.+|.++..++..+ .++|+|+||+|+++ +..+.|. ..+...+..
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~pl---------T~d~~~i~~ 73 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTL---------TRDYGKFLS 73 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEE---------ESCHHHHHH
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCC---------CCCHHHHHH
Confidence 468999999999973 58999999999887654 68899999999984 6654332 145888999
Q ss_pred HHhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH---HHHhhCCCCCCeeEEEEEecCC-c
Q psy17515 284 ALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE---VFKHYNWPHMPVRLFSYLIGKS-S 359 (1061)
Q Consensus 284 ~I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~---i~~~~n~~~~~VrIfTigIG~~-~ 359 (1061)
+|+.+.+.|+|++..||..|.+.|++.... ....++|||++|+...+..+ ..+.. ...+|+|+++|+|.+ .
T Consensus 74 ~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~---~~~~riiil~~~~~~~~~~~~~~~a~~l--k~~gi~v~~Ig~G~~~~ 148 (192)
T 2x5n_A 74 AMHDLPVRGNAKFGDGIQIAQLALKHRENK---IQRQRIVAFVGSPIVEDEKNLIRLAKRM--KKNNVAIDIIHIGELQN 148 (192)
T ss_dssp HHTTCCCCSCCCHHHHHHHHHHHHHTCSCT---TSEEEEEEEECSCCSSCHHHHHHHHHHH--HHTTEEEEEEEESCC--
T ss_pred HHHcCCCCCCchHHHHHHHHHHHHHhcccc---CCCceEEEEEECCCCCCchhHHHHHHHH--HHCCCEEEEEEeCCCCc
Confidence 999999999999999999999999874321 12345677777766443433 23322 356799999999998 5
Q ss_pred hhhhhhhhhcc
Q psy17515 360 NYAEMKQMACS 370 (1061)
Q Consensus 360 d~~~L~~IA~~ 370 (1061)
+.. |+.+|..
T Consensus 149 ~~~-l~~la~~ 158 (192)
T 2x5n_A 149 ESA-LQHFIDA 158 (192)
T ss_dssp -CH-HHHHHHH
T ss_pred cHH-HHHHHHh
Confidence 556 9999887
No 29
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.41 E-value=1.8e-13 Score=176.49 Aligned_cols=166 Identities=13% Similarity=0.221 Sum_probs=126.7
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCC-CEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcC
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSN-DFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANV 288 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~-D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l 288 (1061)
..|.||+||||.||||.+.+++.+|++++.+++.|.++ ++|+||.|++.+...++ +. ...+++.+.++|+.+
T Consensus 128 ~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~-----lt--~~~~~~~l~~ai~~i 200 (1095)
T 3k6s_A 128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFT-----FE--EFRRSSNPLSLLASV 200 (1095)
T ss_dssp CCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEEC-----SH--HHHSCSCGGGGTTTC
T ss_pred CCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEec-----Cc--ccCCHHHHHHHHhhh
Confidence 34789999999999999999999999999999999865 89999999999886543 11 112445567778888
Q ss_pred -CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC-c---HHHHHHhhCCCCCCeeEEEEEecCC----c
Q psy17515 289 -KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS-A---FKEVFKHYNWPHMPVRLFSYLIGKS----S 359 (1061)
Q Consensus 289 -~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~-~---~~~i~~~~n~~~~~VrIfTigIG~~----~ 359 (1061)
..+|+|++..||..|.+.+..... +..+...++|||||||.++ + ..+..+... ..+|+||+||||.. .
T Consensus 201 ~~~gG~T~~g~AL~~a~~~lf~~~~-g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r--~~GI~i~aIGVG~~~~~~~ 277 (1095)
T 3k6s_A 201 HQLQGFTYTATAIQNVVHRLFHASY-GARRDAAKILIVITDGKKEGDSLDYKDVIPMAD--AAGIIRYAIGVGLAFQNRN 277 (1095)
T ss_dssp CCCCSCBCHHHHHHHHHTTTTSTTT-TCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHH--HHCEEECCEEBSSGGGSTT
T ss_pred hcccCCChHHHHHHHHHHhhccccc-cCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHH--HCCCEEEEEeccccccccc
Confidence 467899999999999886543221 1223467899999999994 2 234444333 35799999999987 5
Q ss_pred hhhhhhhhhccCCc-cceeeecccccc
Q psy17515 360 NYAEMKQMACSNKG-YFEFIKNTDRLR 385 (1061)
Q Consensus 360 d~~~L~~IA~~ngG-~y~~I~~~~dv~ 385 (1061)
+..+|+.||...+| .++.+.+.+++.
T Consensus 278 d~~eL~~IAs~p~g~~vf~v~d~~~L~ 304 (1095)
T 3k6s_A 278 SWKELNDIASKPSQEHIFKVEDFDALK 304 (1095)
T ss_dssp SSHHHHTTSCSSTTTSCCCBSCSGGGG
T ss_pred CHHHHHHHHcCCCCceEEEcCCHHHHH
Confidence 88999999998776 666666655544
No 30
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=99.14 E-value=8.9e-11 Score=130.72 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=104.9
Q ss_pred eeccccccccccc---CCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhh
Q psy17515 393 LVMARPLIMYQTE---HPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKL 469 (1061)
Q Consensus 393 d~larp~~~~~~~---~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~l 469 (1061)
+...||||+.+.. +.++.++++.+..++.+ +..++++++++.||++. |+++||++++++++.|.+.
T Consensus 112 n~~~R~yf~~a~~~~~~~~~~s~~~~~~~~g~~----~~~~~p~i~~a~pV~~~-------g~~~GVlv~~i~l~~l~~~ 180 (295)
T 3lid_A 112 DKSAREYFKYAQSLDNEQISAWGIELERDKGEL----VYPLSPSLRILMPISVN-------DVRQGYLVLNVDIEYLSSL 180 (295)
T ss_dssp BCTTSHHHHHHHHSCTTCCEECCCEECEETTEE----CSSCCEEEEEEEEEEET-------TEEEEEEEEEEEHHHHHHH
T ss_pred cchhhHHHHHHhcCCCCcEEEeCceecccCCcc----cCCCCCEEEEEEEEccC-------CeEEEEEEEEecHHHHHHH
Confidence 5667899987653 34555555544332211 12358999999999743 8999999999999999999
Q ss_pred ccCCccCCceEEEEEeCCCcEEEcCCCCcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHHhcCCCceeE
Q psy17515 470 VPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEF 549 (1061)
Q Consensus 470 l~~~klG~~GY~flVd~nG~VL~HPdl~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi~~~~G~~~~ 549 (1061)
+. .++|.+|++||+|.+|++|+||+....... +.+.-. + ....+....+.++|..+++|.+.
T Consensus 181 ~~-~~~~~~~~~~l~d~~G~~l~~~~~~~~~g~-~~~~~~-----~----------~~~~~~~p~~~~~i~~~~~G~~~- 242 (295)
T 3lid_A 181 LN-YSPVRDFHIELVKHKGFYIASPDESRLYGD-IIPERS-----Q----------FNFSNMYPDIWPRVVSEQAGYSY- 242 (295)
T ss_dssp HS-EETTTTEECEEEETTSBEEECSCGGGBTTT-TCGGGT-----T----------CBHHHHCTTTHHHHHTTCCEEEE-
T ss_pred Hh-hcccCCCcEEEEcCCCCEEecCCcccchhc-cccccc-----c----------cchhhhChHHHHHHhhCCCceEE-
Confidence 85 688999999999999999999986544211 100000 0 00011122456778887777631
Q ss_pred EEEEeeCCeEEEeeeeeEEEEEEe---CCCCeEEEEEEeCcc
Q psy17515 550 KVKLHYDEMRRVTSRRHRYFYHPI---EGTPYSLGLALPDGY 588 (1061)
Q Consensus 550 ~~~~~~dg~~rv~~~~~~y~y~pI---~~T~WsL~v~lp~~~ 588 (1061)
.+. +.++|.++ ++++|+|++++|+++
T Consensus 243 ------~~~-------~l~~f~~i~~~~~~~w~lvv~i~~~e 271 (295)
T 3lid_A 243 ------SGE-------HLIAFSSIKFVSNEPLHLIIDLSNEQ 271 (295)
T ss_dssp ------CSS-------EEEEEEEEECSSSSEEEEEEEEEHHH
T ss_pred ------eCC-------cEEEEEEeecCCCCceEEEEECCHHH
Confidence 221 25677766 999999999999988
No 31
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.11 E-value=1.8e-10 Score=144.88 Aligned_cols=122 Identities=21% Similarity=0.299 Sum_probs=91.4
Q ss_pred cCCCceEEEEEccCCCCCcc------hHHHHHHHHHHHHHHcC--CCCEEEEEEEcCceee-----eeccccc-------
Q psy17515 209 ATSPKDIVILLDASSTLSTK------HRNLARATINVILDTLG--SNDFVNIFTFSDVTVE-----LVPCYRE------- 268 (1061)
Q Consensus 209 a~~pkdVVILlD~SGSM~g~------~l~~aK~a~~~iLdtL~--~~D~v~Vv~Fs~~~~~-----~~~c~~~------- 268 (1061)
...|.|||||||+||||.+. |++.+|++++.+++.|. ++|+|+||.|++++.. +..|+.+
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n 300 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN 300 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence 35799999999999999986 47889999999999885 5999999999987632 2222211
Q ss_pred -c---------c---------c--ccCHHhHHHHHHHHhc----------CCCCCCcchHHHHHHHHHHHHhcccCCCCC
Q psy17515 269 -M---------L---------V--QATDENKRTLKAALAN----------VKGDNVANFTGALATAFEILHKYNRTNQGC 317 (1061)
Q Consensus 269 -~---------l---------v--~at~~n~~~lk~~I~~----------l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~ 317 (1061)
. + . ..+..++..++.+|.. +.+.|+|++..||..|.++|..... +
T Consensus 301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~----~ 376 (893)
T 2ww8_A 301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQAR----Q 376 (893)
T ss_dssp CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSC----S
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcc----c
Confidence 0 0 0 0123456777788875 3457999999999999999975321 2
Q ss_pred CCceEEEEEeCCCCCcH
Q psy17515 318 QCNQAIMLVSSGPPSAF 334 (1061)
Q Consensus 318 ~~~~~IvLlTDG~~~~~ 334 (1061)
...++|||||||.++..
T Consensus 377 ~~~kvIILLTDG~pt~~ 393 (893)
T 2ww8_A 377 NSQKVIFHITDGVPTMS 393 (893)
T ss_dssp SSEEEEEEEESSCCSEE
T ss_pred CCCeEEEEEcCCCCCcc
Confidence 35679999999999854
No 32
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=99.10 E-value=5e-10 Score=120.50 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=69.1
Q ss_pred eecccccccccccC-CccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhhcc
Q psy17515 393 LVMARPLIMYQTEH-PLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVP 471 (1061)
Q Consensus 393 d~larp~~~~~~~~-~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~ll~ 471 (1061)
+...||||+.+..+ ...|+ |.+..+ +.++++++.||++ +|+++||++++++++.|.+.+.
T Consensus 100 ~~~~r~~~~~a~~~~~~~~~--~~~~~~----------g~~~i~~~~pi~~-------~g~~~Gvv~~~i~l~~l~~~~~ 160 (260)
T 3by9_A 100 NFAWRPYFYLSIAGQKSQYF--ALGSTS----------GQRGYYYAYPVIY-------AAEILGVIVVKMDLSAIEQGWQ 160 (260)
T ss_dssp BCTTSHHHHHHTTTSCEEEE--EECTTT----------CCEEEEEEEEEEE-------TTEEEEEEEEEECSHHHHHTCC
T ss_pred ccccCHHHHHHHhCCCceEE--EEecCC----------CCEEEEEEEEEcc-------CCeEEEEEEEEEeHHHHHHHHh
Confidence 56678999876654 34554 766554 5799999999983 2889999999999999999887
Q ss_pred CCccCCceEEEEEeCCCcEEEcCCCCcc
Q psy17515 472 QYKLGPNGYSFVVNNNGRIIYHPDFRPL 499 (1061)
Q Consensus 472 ~~klG~~GY~flVd~nG~VL~HPdl~~~ 499 (1061)
+.+||+||+|.+|.||+||+...+
T Consensus 161 ----~~~g~~~l~d~~G~ii~~~~~~~~ 184 (260)
T 3by9_A 161 ----NKSSYFVATDDHQVVFMSSQPAWL 184 (260)
T ss_dssp ----CSSCEEEEECTTCBEEEESSGGGT
T ss_pred ----cCCCcEEEECCCCeEEEcCChHhc
Confidence 588999999999999999987655
No 33
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=99.09 E-value=1.9e-10 Score=121.21 Aligned_cols=89 Identities=21% Similarity=0.366 Sum_probs=77.9
Q ss_pred eeeccccccccccc-CCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhhc
Q psy17515 392 VLVMARPLIMYQTE-HPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLV 470 (1061)
Q Consensus 392 ~d~larp~~~~~~~-~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~ll 470 (1061)
++...|+||+.+.. +.++||+||.+..+ ++++++++.||++.+ |+++||+++|++++.|.+++
T Consensus 93 ~~~~~r~~f~~a~~~~~~~is~~~~~~~~----------g~~~i~ia~pi~~~~------g~~~Gvl~~~i~l~~l~~~~ 156 (217)
T 4dah_A 93 VNLADRSFFIKAKETKKTVISDSYSSRIT----------GQPIFTICVPVLDSK------RNVTDYLVAAIQIDYLKNLI 156 (217)
T ss_dssp CBCTTSHHHHHHHHHCSCEECCCEECTTT----------CSEEEEEEEEEECTT------SCEEEEEEEEEEHHHHHHHH
T ss_pred CCcchhHHHHHHHhcCCcEEeceEEcCCC----------CCEEEEEEEEEECCC------CCEEEEEEEEEcHHHHHHHH
Confidence 46778999998665 77899999998765 579999999999753 89999999999999999999
Q ss_pred cCCccCCceEEEEEeCCCcEEEcCCCCc
Q psy17515 471 PQYKLGPNGYSFVVNNNGRIIYHPDFRP 498 (1061)
Q Consensus 471 ~~~klG~~GY~flVd~nG~VL~HPdl~~ 498 (1061)
...++| ||+||+|.+|.+|+||+..+
T Consensus 157 ~~~~~g--g~~~l~d~~G~ii~~~~~~~ 182 (217)
T 4dah_A 157 NLLSPD--VYIEVVNQDGKMIFASGQAS 182 (217)
T ss_dssp HHHCTT--SCEEEEETTSCEEEEESCGG
T ss_pred HhcCCC--cEEEEEcCCCCEEEeCCCCC
Confidence 888887 99999999999999997643
No 34
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=98.99 E-value=1.2e-09 Score=132.29 Aligned_cols=141 Identities=12% Similarity=0.181 Sum_probs=97.3
Q ss_pred CceEEEEEccCCCCCc------chHHHHHHHHHHHHHH---cCCCCEEEEEEEcCceeeeecc-----cccc--ccccCH
Q psy17515 212 PKDIVILLDASSTLST------KHRNLARATINVILDT---LGSNDFVNIFTFSDVTVELVPC-----YREM--LVQATD 275 (1061)
Q Consensus 212 pkdVVILlD~SGSM~g------~~l~~aK~a~~~iLdt---L~~~D~v~Vv~Fs~~~~~~~~c-----~~~~--lv~at~ 275 (1061)
...+||+||+|+||.. .+|+.||+++..++.. .+++|+||||.|++++.. .|- |... +...+.
T Consensus 7 ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~-~plt~d~~y~~i~vl~~l~~ 85 (565)
T 1jey_B 7 KAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTD-NPLSGGDQYQNITVHRHLML 85 (565)
T ss_dssp CEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCB-STTCTTTCSTTEEEEEEEEC
T ss_pred ceEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCC-CccccccCCCceEEeecCCC
Confidence 3689999999999963 5899999999999994 689999999999987631 110 1110 111111
Q ss_pred HhHHHHHHHHhc-CCCC-CCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc----HHHHHHhhCCCCCCee
Q psy17515 276 ENKRTLKAALAN-VKGD-NVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA----FKEVFKHYNWPHMPVR 349 (1061)
Q Consensus 276 ~n~~~lk~~I~~-l~~~-G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~----~~~i~~~~n~~~~~Vr 349 (1061)
.+.+.+ ..|.. +.++ ++|++..||..|.++|.+..... ...++.|||||||..+. ..++.+.++ ..+|+
T Consensus 86 ~~~~~l-~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~--k~~~krIiLlTDg~~~~~~~~~~~~a~~l~--~~gI~ 160 (565)
T 1jey_B 86 PDFDLL-EDIESKIQPGSQQADFLDALIVSMDVIQHETIGK--KFEKRHIEIFTDLSSRFSKSQLDIIIHSLK--KCDIS 160 (565)
T ss_dssp CCHHHH-HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSS--CCSEEEEEEECCCCSCCCCTTHHHHHHHHH--HTTEE
T ss_pred CCHHHH-HHHHhhccCCCccccHHHHHHHHHHHHHHHhhcc--cccccEEEEEeCCCCCCCHHHHHHHHHHHH--hcCcE
Confidence 233333 34555 6655 68999999999999998752211 11357999999998773 233444333 56799
Q ss_pred EE-EEEecCC
Q psy17515 350 LF-SYLIGKS 358 (1061)
Q Consensus 350 If-TigIG~~ 358 (1061)
|+ ++|+|.+
T Consensus 161 i~~vig~g~~ 170 (565)
T 1jey_B 161 LQFFLPFSLG 170 (565)
T ss_dssp EEEEESSCCC
T ss_pred EEEEeccCCC
Confidence 99 9999865
No 35
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.91 E-value=1.5e-09 Score=130.75 Aligned_cols=129 Identities=11% Similarity=0.144 Sum_probs=88.9
Q ss_pred CCCceEEEEEccCCCCCc----chHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCH-HhHHHHHHH
Q psy17515 210 TSPKDIVILLDASSTLST----KHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATD-ENKRTLKAA 284 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g----~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~-~n~~~lk~~ 284 (1061)
..+.+++|+||+||||.+ .++..++.++...+..+..+|+|+||.|++.... + +.+. .++..+.+.
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~-~--------~~t~~~~l~~~l~~ 436 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLP-C--------PITVNMLLHEVVEK 436 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEEC-C--------SCCTTSCHHHHHHH
T ss_pred CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceE-c--------CCCCcccHHHHHHH
Confidence 468999999999999985 3455544444445566678999999999975321 1 1121 235556666
Q ss_pred HhcCCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH----HHHHHhhCC-CCCCeeEEEEEecCC
Q psy17515 285 LANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF----KEVFKHYNW-PHMPVRLFSYLIGKS 358 (1061)
Q Consensus 285 I~~l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~----~~i~~~~n~-~~~~VrIfTigIG~~ 358 (1061)
|..+ ++|+|+++.||..|.+. . .....|||||||..+.+ .+.++++.. .+.++++|+||+|..
T Consensus 437 l~~~-~~GgT~i~~aL~~a~~~----~------~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~ 504 (538)
T 1yvr_A 437 MSDI-TMGSTDCALPMLWAQKT----N------TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSN 504 (538)
T ss_dssp HTTC-CCSCCCTTHHHHHHHHT----T------CCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSS
T ss_pred HhcC-CCCCCcHHHHHHHHHhc----c------CCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCC
Confidence 6654 68999999999999764 1 12359999999988643 344444332 134688899999975
No 36
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.81 E-value=3.5e-09 Score=112.89 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=74.9
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeecccccccc-ccCHHhHHHHHHHH
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLV-QATDENKRTLKAAL 285 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv-~at~~n~~~lk~~I 285 (1061)
..|.+|+||||+||||. .++..+|.++..++..+. ..++|+||+|+++..... .++ +-+. +. .+...+
T Consensus 132 ~~~~~vvfLVDtSgSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~-----~ll~pfT~-~~-~~~~~l 203 (242)
T 3rag_A 132 EVALHLVVCLDTSASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEAT-----RLVQPFSS-EV-NVAALE 203 (242)
T ss_dssp HSCEEEEEEEECSGGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSC-----EEEEEEES-SC-CHHHHH
T ss_pred cCCCCEEEEEECcccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccce-----eecCCCCC-hH-HHHHHH
Confidence 47999999999999998 499999999999999875 579999999998752110 011 1111 22 567788
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHhcc
Q psy17515 286 ANVKGDNVANFTGALATAFEILHKYN 311 (1061)
Q Consensus 286 ~~l~~~G~Tnl~~AL~~A~~~L~~~~ 311 (1061)
..+.++|+|.++.||..|+++|++..
T Consensus 204 ~~L~agG~Tplg~AL~~A~~~~~~~~ 229 (242)
T 3rag_A 204 AELVARGGTPTGPAIDHAADLLLSHA 229 (242)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 88999999999999999999997643
No 37
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=98.61 E-value=7.8e-08 Score=117.22 Aligned_cols=141 Identities=11% Similarity=0.100 Sum_probs=96.4
Q ss_pred Cce-EEEEEccCCCCCc-------chHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeeeecccc-----ccccccCH
Q psy17515 212 PKD-IVILLDASSTLST-------KHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYR-----EMLVQATD 275 (1061)
Q Consensus 212 pkd-VVILlD~SGSM~g-------~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~~~c~~-----~~lv~at~ 275 (1061)
.|+ +||+||+|+||.. .+++.|+..+..++... +++|+||||.|+++....-.-+. ..|...+.
T Consensus 34 ~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~ 113 (609)
T 1jey_A 34 GRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA 113 (609)
T ss_dssp CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCH
T ss_pred CceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCH
Confidence 345 9999999999964 38999999999999873 68999999999998731000000 12333444
Q ss_pred HhHHHHHHHHh--------c-CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHH------H---H
Q psy17515 276 ENKRTLKAALA--------N-VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFK------E---V 337 (1061)
Q Consensus 276 ~n~~~lk~~I~--------~-l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~------~---i 337 (1061)
..++.+.+.++ . +..+++|++..||..|.++|..... ....+.|||||||....+. . +
T Consensus 114 ~~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~----k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~ 189 (609)
T 1jey_A 114 KRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQF----KMSHKRIMLFTNEDNPHGNDSAKASRARTK 189 (609)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSS----CEEEEEEEEEESCSCTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhch----hhcCCEEEEEcCCCCCCCCchHHHHHHHHH
Confidence 44444444332 1 1224689999999999999986421 1246899999999886322 1 2
Q ss_pred HHhhCCCCCCeeEEEEEecCC
Q psy17515 338 FKHYNWPHMPVRLFSYLIGKS 358 (1061)
Q Consensus 338 ~~~~n~~~~~VrIfTigIG~~ 358 (1061)
.+.+ ...+|+|++||||.+
T Consensus 190 a~~l--~~~gI~i~~igig~~ 208 (609)
T 1jey_A 190 AGDL--RDTGIFLDLMHLKKP 208 (609)
T ss_dssp HHHH--HHHTEEEEEEEBCCT
T ss_pred HHHH--HhcCcEEEEEecCCC
Confidence 2222 245799999999976
No 38
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.58 E-value=5.4e-08 Score=116.91 Aligned_cols=128 Identities=13% Similarity=0.083 Sum_probs=83.5
Q ss_pred CCCceEEEEEccCCCCCc-c-----hHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHH
Q psy17515 210 TSPKDIVILLDASSTLST-K-----HRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKA 283 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g-~-----~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~ 283 (1061)
..+.+++|+||+||||.+ . ++..+..++...+-.+..+|+++|+.|++....+ + + +.. ..+.+
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~-~-----~---~~~--~~l~~ 428 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPL-G-----I---TPR--DTLES 428 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEEC-C-----C---CTT--CCHHH
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEc-C-----C---Ccc--hhHHH
Confidence 567999999999999976 2 2443433444445556789999999999864321 1 1 111 22334
Q ss_pred HHhcCC--CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc----HHHHHHhhCCC-CCCeeEEEEEec
Q psy17515 284 ALANVK--GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA----FKEVFKHYNWP-HMPVRLFSYLIG 356 (1061)
Q Consensus 284 ~I~~l~--~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~----~~~i~~~~n~~-~~~VrIfTigIG 356 (1061)
.++.+. +.|+|++..+|..|.+. .. ....|||+|||..+. ..+.++++... ..+++|+++++|
T Consensus 429 ~l~~l~~~~~ggTdi~~~l~~a~~~----~~------~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~ 498 (535)
T 2nvo_A 429 AMQKAQSVSFGGTDCAQPILWAAQE----RL------DVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLT 498 (535)
T ss_dssp HHHHTCCSSBCCCCTTHHHHHHHHT----TC------CCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETT
T ss_pred HHHHHhhCCCCCccHHHHHHHHHHh----cC------CCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEecc
Confidence 444443 36899999998777432 11 234899999997764 33455555421 346999999999
Q ss_pred CC
Q psy17515 357 KS 358 (1061)
Q Consensus 357 ~~ 358 (1061)
..
T Consensus 499 ~~ 500 (535)
T 2nvo_A 499 AT 500 (535)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 39
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=98.29 E-value=3.1e-06 Score=94.47 Aligned_cols=85 Identities=11% Similarity=0.037 Sum_probs=66.6
Q ss_pred eecccccccccccCC-ccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhhcc
Q psy17515 393 LVMARPLIMYQTEHP-LYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVP 471 (1061)
Q Consensus 393 d~larp~~~~~~~~~-~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~ll~ 471 (1061)
+...||||+.+..+. ..+.. .+.. +++++++++.||++. |+++||++++++++.|.+.+.
T Consensus 141 d~~~R~yf~~Al~g~~~~~~~--~~~~----------tg~~~i~~a~PV~~~-------G~viGVv~v~i~l~~l~~~~~ 201 (305)
T 3e4o_A 141 DYAFRDYFRLAVRDGMAEHFA--MGTV----------SKRPGLYISRRVDGP-------GGPLGVIVAKLEFDGVEADWQ 201 (305)
T ss_dssp BCTTSHHHHHHHHHSEEEEEE--ECTT----------TCCEEEEEEEEEEET-------TEEEEEEEEEECCHHHHHHHH
T ss_pred CccccHHHHHHHhcCCcEEEE--EecC----------CCCEEEEEEEEEccC-------CeEEEEEEEEEcHHHHHHHHh
Confidence 556789998765433 22221 2333 368999999999864 899999999999999999875
Q ss_pred CCccCCceEEEEEeCCCcEEEcCCCCccc
Q psy17515 472 QYKLGPNGYSFVVNNNGRIIYHPDFRPLY 500 (1061)
Q Consensus 472 ~~klG~~GY~flVd~nG~VL~HPdl~~~~ 500 (1061)
+.+||+||+|.+|.||+||+....+
T Consensus 202 ----~~~g~~~l~D~~G~ii~~~~~~~~~ 226 (305)
T 3e4o_A 202 ----ASGKPAYVTDRRGIVLITSLPSWRF 226 (305)
T ss_dssp ----HHTSCEEEECTTCBEEEESSGGGTT
T ss_pred ----cCCceEEEEcCCCeEEEeCChhhcc
Confidence 4789999999999999999887663
No 40
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2, MCSG, protein structur initiative; 1.91A {Vibrio parahaemolyticus}
Probab=98.14 E-value=5.2e-06 Score=84.75 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=64.2
Q ss_pred hHHHHhhccCCccCCceEEEEEeCCCcEEEcCCC-CcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHHh
Q psy17515 463 IQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDF-RPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMID 541 (1061)
Q Consensus 463 L~~L~~ll~~~klG~~GY~flVd~nG~VL~HPdl-~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi~ 541 (1061)
++.+.+.+..+++|.+||+||+|.+|.+|+||.. ...++. .. ++.+ .+ + .+.+.++.+.. .
T Consensus 49 ~~~l~~~l~~~~~g~~GY~fi~d~~G~~i~hp~~~~l~Gk~----~~---~~~d-----~~-g----~~~~~~~~~~~-~ 110 (174)
T 2qhk_A 49 KQAAKEILKAMRFESDGYFFAYDSQGINTLHAIKPSLEGKN----LY---DLKD-----EN-G----VAVIAGLIDAS-Q 110 (174)
T ss_dssp HHHHHHHHHHCCSBTTBCCEEECTTSBEEEESSCGGGTTCB----CT---TCBC-----TT-C----CBHHHHHHHHH-H
T ss_pred HHHHHHHHHhcEECCCCEEEEEeCCCCEEEcCCChhhCCCc----cc---cccC-----Cc-h----hHHHHHHHHHH-h
Confidence 6788889999999999999999999999999943 333221 10 1111 00 0 01122332222 1
Q ss_pred cCCCceeEEEEEeeC--CeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcchhhhhchHHH
Q psy17515 542 QKEGETEFKVKLHYD--EMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEE 598 (1061)
Q Consensus 542 ~~~G~~~~~~~~~~d--g~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~~~~~~~~~~~ 598 (1061)
...|... |.+. |... ...+..++.++++++|.|+..+|.++ +.+....
T Consensus 111 ~~~G~~~----y~~~~p~~~~--~~~k~~~~~~~~~~~W~ig~g~~~dd---i~~~~~~ 160 (174)
T 2qhk_A 111 KGDGFLY----FSWHKPTINA--QAPKLGYAEYLQKWDWVLGTGIYIDD---IDQQVAM 160 (174)
T ss_dssp HSCSEEE----EEEEEGGGTE--EEEEEEEEEEEGGGTEEEEEEEECTT---TC-----
T ss_pred cCCeEEE----EEecCCCCCC--ccceEEEEEEeCCCCEEEEEcccHHH---HHHHHHH
Confidence 3345533 3222 1100 12356788999999999999999988 5554443
No 41
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=97.85 E-value=0.00014 Score=90.72 Aligned_cols=162 Identities=16% Similarity=0.173 Sum_probs=113.8
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeecccc--------------------cc
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYR--------------------EM 269 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~--------------------~~ 269 (1061)
+.|--++||||+|.+ ..+++.++++++..|+.|+++-+||+|+|++.++...--.. ..
T Consensus 130 p~pp~~vFvIDvS~~--a~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~m 207 (769)
T 2nut_A 130 QMPLIFLYVVDTCME--DEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEM 207 (769)
T ss_dssp CCCCEEEEEEECCSC--HHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred CCCCEEEEEEECCcc--HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHH
Confidence 467889999999987 55789999999999999999999999999998875210000 00
Q ss_pred c-cc------------------------cCHHhHHHHHHHHhcCCC---------CCCcchHHHHHHHHHHHHhcccCCC
Q psy17515 270 L-VQ------------------------ATDENKRTLKAALANVKG---------DNVANFTGALATAFEILHKYNRTNQ 315 (1061)
Q Consensus 270 l-v~------------------------at~~n~~~lk~~I~~l~~---------~G~Tnl~~AL~~A~~~L~~~~~~~~ 315 (1061)
+ +. .-.+.+..+.+.|+.|.. .+.+.++.||..|+.+|+.....
T Consensus 208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~-- 285 (769)
T 2nut_A 208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPN-- 285 (769)
T ss_dssp HC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCS--
T ss_pred hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccC--
Confidence 1 10 012345567777887754 45689999999999999863211
Q ss_pred CCCCceEEEEEeCCCCCcHHH----------------------------------HHHhhCCCCCCeeEEEEEecCC-ch
Q psy17515 316 GCQCNQAIMLVSSGPPSAFKE----------------------------------VFKHYNWPHMPVRLFSYLIGKS-SN 360 (1061)
Q Consensus 316 ~~~~~~~IvLlTDG~~~~~~~----------------------------------i~~~~n~~~~~VrIfTigIG~~-~d 360 (1061)
+.-.|++++.|.++.+.- ...+. ...+|.|..|+++.+ .+
T Consensus 286 ---~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~--~~~gi~VDlF~~~~~~vd 360 (769)
T 2nut_A 286 ---TGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRA--ATTGHVIDIYACALDQTG 360 (769)
T ss_dssp ---SCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHH--HHHTCEEEEEEECSSCCC
T ss_pred ---CCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHH--HHCCeEEEEEeccCCccC
Confidence 223688888888763210 00111 234677888888887 99
Q ss_pred hhhhhhhhccCCccceeeec
Q psy17515 361 YAEMKQMACSNKGYFEFIKN 380 (1061)
Q Consensus 361 ~~~L~~IA~~ngG~y~~I~~ 380 (1061)
...|+.++..+||.....++
T Consensus 361 la~l~~l~~~TGG~~~~~~~ 380 (769)
T 2nut_A 361 LLEMKCCPNLTGGYMVMGDS 380 (769)
T ss_dssp HHHHTHHHHHSSCCEEEESC
T ss_pred hHHHHHHhhcCCceEEEcCC
Confidence 99999999999997665543
No 42
>4exo_A Methyl-accepting chemotaxis protein; signaling protein, chemotaxis receptor, PAS domain, four HEL bundle; HET: MSE; 1.90A {Vibrio parahaemolyticus}
Probab=97.61 E-value=0.00015 Score=71.78 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=60.6
Q ss_pred hHHHHhhccCCccCCceEEEEEeCCCcEEEcCC-CCcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHHh
Q psy17515 463 IQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPD-FRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMID 541 (1061)
Q Consensus 463 L~~L~~ll~~~klG~~GY~flVd~nG~VL~HPd-l~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi~ 541 (1061)
.+.+.+.+..+++|.+||+||+|.+|.+|+||. ....+++ . .++.+ .+ + ...+.++.+.. .
T Consensus 42 ~~~~~~~l~~ir~g~~gY~fv~d~~G~~l~hp~~p~l~Gk~----~---~~~~d-----~~-G----~~~~~~~~~~a-~ 103 (146)
T 4exo_A 42 KQAAKEILKAMRFESDGYFFAYDSQGINTLHAIKPSLEGKN----L---YDLKD-----EN-G----VAVIAGLIDAS-Q 103 (146)
T ss_dssp HHHHHHHHHHCCSBTTBCCEEECTTSBEEEESSCGGGTTCB----C---TTCBC-----TT-C----CBHHHHHHHHH-H
T ss_pred HHHHHHHHHhCEECCCCEEEEEeCCCcEEEecCChhhcCCC----c---ccccC-----Cc-h----hHHHHHHHHHH-H
Confidence 467888899999999999999999999999994 3333222 1 11111 11 0 01222333222 2
Q ss_pred cCCCceeEEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCc
Q psy17515 542 QKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDG 587 (1061)
Q Consensus 542 ~~~G~~~~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~ 587 (1061)
...|...+. +...|... ...+..++.+++.++|.|+.-+..+
T Consensus 104 ~g~g~v~Y~--~~~p~~~~--~~~K~sy~~~~~~w~W~IgtG~y~d 145 (146)
T 4exo_A 104 KGDGFLYFS--WHKPTINA--QAPKLGYAEYLQKWDWVLGTGIYID 145 (146)
T ss_dssp HSCSEEEEE--EEEGGGTE--EEEEEEEEEEEGGGTEEEEEEEECC
T ss_pred cCCeEEEEE--eecCCCCc--ceeeEEEEEEeCCCCEEEEEeEecC
Confidence 234543322 22112111 1245778899999999999887654
No 43
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=97.61 E-value=7.6e-05 Score=78.44 Aligned_cols=110 Identities=10% Similarity=0.088 Sum_probs=74.4
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN 287 (1061)
Q Consensus 211 ~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~ 287 (1061)
.|.|++||+|.||||.+. ++..|..+..|++.| ..+-|+++..|-+.. |+ ... ....+...+++.|+.
T Consensus 2 ~pvDl~fl~D~S~SM~~d-i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~------~~-~~l-~lT~d~~~F~~~v~~ 72 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQGH-LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT------FQ-HIL-KLTADSSQFQRELRK 72 (212)
T ss_dssp CCEEEEEEEECCGGGTTT-HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC------EE-EEE-EEESCHHHHHHHHHT
T ss_pred CceEEEEEEeCCCcchhH-HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc------ce-ecC-CcCCCHHHHHHHHhh
Confidence 488999999999999864 677777777776554 577899999998772 22 122 234678899999999
Q ss_pred CCCCCCcc----hHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc
Q psy17515 288 VKGDNVAN----FTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA 333 (1061)
Q Consensus 288 l~~~G~Tn----l~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~ 333 (1061)
+..+|+-+ -..|+..|.-...+.. - ++ ..+.|||+||+.+-.
T Consensus 73 ~~vsg~~D~PE~g~dal~qa~~c~~~i~-W--r~-a~rllvl~TDa~~H~ 118 (212)
T 2iue_A 73 QLVSGKLATPKGQLDAVVQVAICLGEIG-W--RN-GTRFLVLVTDNDFHL 118 (212)
T ss_dssp CCCCCCSSSSBCHHHHHHHHHHCHHHHT-C--CS-SEEEEEEECSSCBCC
T ss_pred ccccCCCCCCchHHHHHHHHHHhhhhcc-c--CC-ccEEEEEECcCCccc
Confidence 98777533 3334444432111111 1 12 568999999997763
No 44
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=97.38 E-value=0.00061 Score=85.42 Aligned_cols=162 Identities=13% Similarity=0.160 Sum_probs=107.2
Q ss_pred CCCceEEEEEccCCCCCcc-hHHHHHHHHHHHHHHcCC---CCEEEEEEEcCceeeee--cccc---------c------
Q psy17515 210 TSPKDIVILLDASSTLSTK-HRNLARATINVILDTLGS---NDFVNIFTFSDVTVELV--PCYR---------E------ 268 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~-~l~~aK~a~~~iLdtL~~---~D~v~Vv~Fs~~~~~~~--~c~~---------~------ 268 (1061)
+.|--++||||+|.+.-.. -++.++++++..|+.|.+ +-+||+|+|++.++..- +... .
T Consensus 185 p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~d 264 (810)
T 1pcx_A 185 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD 264 (810)
T ss_dssp CCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCC
T ss_pred CCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccc
Confidence 4577899999999876433 378899999999999986 57999999999987531 1000 0
Q ss_pred ----------cccccCHHhHHHHHHHHhcCC------CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 269 ----------MLVQATDENKRTLKAALANVK------GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 269 ----------~lv~at~~n~~~lk~~I~~l~------~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
.+...-.+.+..+...|+.+. ..+.+.++.||+.|+.+|+.. .-.||+++.|.++
T Consensus 265 l~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~---------GGrI~~F~sg~pt 335 (810)
T 1pcx_A 265 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV---------GGKIIVVSGTLPN 335 (810)
T ss_dssp TTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT---------CEEEEEEESSCCC
T ss_pred cccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc---------CCEEEEEecCCCC
Confidence 011111123444455555442 245789999999999999752 1278899999887
Q ss_pred cHHH-------------------HHHhhCC---------CCCCeeEEEEEecCC-chhhhhhhhhccCCccceeeec
Q psy17515 333 AFKE-------------------VFKHYNW---------PHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIKN 380 (1061)
Q Consensus 333 ~~~~-------------------i~~~~n~---------~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~~ 380 (1061)
.+.- .+..... ...++.|-.|+++.+ .+...|..++..+||.....++
T Consensus 336 ~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~ 412 (810)
T 1pcx_A 336 LGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPG 412 (810)
T ss_dssp SSTTCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEET
T ss_pred CCCCcccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCC
Confidence 4210 1110000 134577777777777 9999999999999997655443
No 45
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=97.27 E-value=0.00066 Score=69.80 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=59.1
Q ss_pred HHHhhccCCccCCc-eEEEEEeCCCcEEEcCC-CCcccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHHHhc
Q psy17515 465 QIQKLVPQYKLGPN-GYSFVVNNNGRIIYHPD-FRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQ 542 (1061)
Q Consensus 465 ~L~~ll~~~klG~~-GY~flVd~nG~VL~HPd-l~~~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~mi~~ 542 (1061)
.+.+.+..+++|.+ ||.|++|.+|.+|+||. ....+++ . .|+.+ .+ + .+.+.++.+.. ..
T Consensus 55 ~a~~~l~~~r~g~~~gY~fv~d~~g~~l~hP~~p~l~Gk~----~---~~~~D-----~~-G----~~~~~~~~~~a-~~ 116 (181)
T 3ub6_A 55 MALDYFKRINDDKGMIYMVVVDKNGVVLFDPVNPKTVGQS----G---LDAQS-----VD-G----VYYVRGYLEAA-KK 116 (181)
T ss_dssp HHHHHHHHHHHTCSSCEEEEECTTCBEEECTTSGGGTTSB----C---TTCCC-----TT-S----CCHHHHHHHHH-HT
T ss_pred HHHHHHHhCccCCCCCEEEEEeCCCCEEEeCCChhhcCCc----c---ccccC-----CC-c----cHHHHHHHHHH-hc
Confidence 35667788889987 89999999999999994 3434322 1 11111 11 1 02223333332 22
Q ss_pred CCCceeEEEEEeeC--CeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcc
Q psy17515 543 KEGETEFKVKLHYD--EMRRVTSRRHRYFYHPIEGTPYSLGLALPDGY 588 (1061)
Q Consensus 543 ~~G~~~~~~~~~~d--g~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~ 588 (1061)
..|.. .|.+. |... ...+..++.+++.++|.|+..+..++
T Consensus 117 g~G~v----~Y~w~~p~~~~--~~~Klsyv~~~~~w~W~IgtG~y~dd 158 (181)
T 3ub6_A 117 GGGYT----YYKMPKYDGGV--PEKKFAYSHYDEVSQMVIAATSYYTD 158 (181)
T ss_dssp TSEEE----EEEECSSTTSC--CEEEEEEEEEETTTTEEEEEEEEHHH
T ss_pred CCcEE----EEEeccCCCCC--ccceEEEEEEECCCCEEEEEeeEHHH
Confidence 23332 23333 1111 12456777899999999999999887
No 46
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=97.26 E-value=0.0029 Score=78.95 Aligned_cols=163 Identities=21% Similarity=0.239 Sum_probs=110.5
Q ss_pred CCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeecccc--------------------cc
Q psy17515 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYR--------------------EM 269 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~--------------------~~ 269 (1061)
+.|--++||||+|.+. ..++.++++++..|+.|+++-+||+|+|++.++...--.. ..
T Consensus 119 ~~pp~~vFvIDvs~~~--~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~ 196 (768)
T 1m2o_A 119 TVPPIFFFVVDLTSET--ENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEM 196 (768)
T ss_dssp CSCCEEEEEEECCSCH--HHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHH
T ss_pred CCCCEEEEEEECCcCH--HHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHH
Confidence 4678899999999875 4689999999999999999999999999988764210000 00
Q ss_pred c------------------------------cccCHHhHHHHHHHHhcCCC---------CCCcchHHHHHHHHHHHHhc
Q psy17515 270 L------------------------------VQATDENKRTLKAALANVKG---------DNVANFTGALATAFEILHKY 310 (1061)
Q Consensus 270 l------------------------------v~at~~n~~~lk~~I~~l~~---------~G~Tnl~~AL~~A~~~L~~~ 310 (1061)
+ ...-.+.+..+.+.|++|.. ...+.++.||..|+.+|+..
T Consensus 197 l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~ 276 (768)
T 1m2o_A 197 LTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGC 276 (768)
T ss_dssp HHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhc
Confidence 1 00011234567777887754 23568999999999999853
Q ss_pred ccCCCCCCCceEEEEEeCCCCCcHHH----------------H-------HHh----hCC-----CCCCeeEEEEEecCC
Q psy17515 311 NRTNQGCQCNQAIMLVSSGPPSAFKE----------------V-------FKH----YNW-----PHMPVRLFSYLIGKS 358 (1061)
Q Consensus 311 ~~~~~~~~~~~~IvLlTDG~~~~~~~----------------i-------~~~----~n~-----~~~~VrIfTigIG~~ 358 (1061)
... +.-.||+++.|.++.+.- + +.. |+. ...++.|-.|.++.+
T Consensus 277 ~~~-----~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~ 351 (768)
T 1m2o_A 277 YKN-----IPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYD 351 (768)
T ss_dssp CTT-----SCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred cCC-----CCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCC
Confidence 211 223788899988763210 0 000 000 123566666777777
Q ss_pred -chhhhhhhhhccCCccceeee
Q psy17515 359 -SNYAEMKQMACSNKGYFEFIK 379 (1061)
Q Consensus 359 -~d~~~L~~IA~~ngG~y~~I~ 379 (1061)
.+...|..++..+||....-+
T Consensus 352 ~~dla~l~~l~~~TGG~v~~y~ 373 (768)
T 1m2o_A 352 QIGMSEMKQLTDSTGGVLLLTD 373 (768)
T ss_dssp CCSHHHHHHHHHHHTCCEEEES
T ss_pred ccChHHHhhHhhcCCceEEEcC
Confidence 999999999999999755544
No 47
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.90 E-value=0.00083 Score=71.66 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=47.0
Q ss_pred CceEEEEEeCCCCCc---HHHHHHhhCCCCCCeeEEEEEecCC-----chhhhhhhhhccCCccceeeecccccc
Q psy17515 319 CNQAIMLVSSGPPSA---FKEVFKHYNWPHMPVRLFSYLIGKS-----SNYAEMKQMACSNKGYFEFIKNTDRLR 385 (1061)
Q Consensus 319 ~~~~IvLlTDG~~~~---~~~i~~~~n~~~~~VrIfTigIG~~-----~d~~~L~~IA~~ngG~y~~I~~~~dv~ 385 (1061)
..++|||||||..+. +.+..+... ..+|+|||||||.. .+...|+.||..++|.|+.+.. .++.
T Consensus 9 ~~k~iillTDG~~~~g~~p~~aa~~a~--~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~-~~l~ 80 (242)
T 3rag_A 9 TIRQILVITDGCSNIGPDPVEAARRAH--RHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP-ADIS 80 (242)
T ss_dssp CEEEEEEEESSCCCSSSCHHHHHHHHH--HTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG-GGHH
T ss_pred CccEEEEEccCCCCCCCCHHHHHHHHH--HCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH-HHHH
Confidence 467999999999873 334333322 45799999999753 3457899999999999999753 4443
No 48
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=96.79 E-value=0.0031 Score=79.81 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=105.6
Q ss_pred CCCceEEEEEccCCCCCcc-hHHHHHHHHHHHHHHcCC---CCEEEEEEEcCceeeeeccc-------------------
Q psy17515 210 TSPKDIVILLDASSTLSTK-HRNLARATINVILDTLGS---NDFVNIFTFSDVTVELVPCY------------------- 266 (1061)
Q Consensus 210 ~~pkdVVILlD~SGSM~g~-~l~~aK~a~~~iLdtL~~---~D~v~Vv~Fs~~~~~~~~c~------------------- 266 (1061)
+.|--++||||+|.+.-.. -+..++++++..|+.|.+ +-+|++|+|++.++..--..
T Consensus 301 p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsd 380 (926)
T 1m2v_B 301 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD 380 (926)
T ss_dssp CCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECC
T ss_pred CCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhccccc
Confidence 3577899999999875333 377889999999999986 57999999999886531000
Q ss_pred --------cccccccCHHhHHHHHHHHhcCC------CCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 267 --------REMLVQATDENKRTLKAALANVK------GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 267 --------~~~lv~at~~n~~~lk~~I~~l~------~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
.+.+...-.+.+..+...|+.|. ....+.++.||+.|+.+|+.. .-.|++++.|.++
T Consensus 381 l~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~---------GGrI~~F~sg~Pt 451 (926)
T 1m2v_B 381 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV---------GGKIIVVSGTLPN 451 (926)
T ss_dssp CSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT---------CEEEEEEESSCCC
T ss_pred cccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh---------CCEEEEEecCCCC
Confidence 00111111233445555555442 245789999999999999852 1278888888876
Q ss_pred cHH----------------HHHHhhCC------------CCCCeeEEEEEecCC-chhhhhhhhhccCCccceeee
Q psy17515 333 AFK----------------EVFKHYNW------------PHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIK 379 (1061)
Q Consensus 333 ~~~----------------~i~~~~n~------------~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~ 379 (1061)
.+. +....+.. ...+|.|-.|.++.+ .+...|..++..+||......
T Consensus 452 ~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~ 527 (926)
T 1m2v_B 452 LGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYP 527 (926)
T ss_dssp SSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcC
Confidence 321 10000110 123566666666666 999999999999999755544
No 49
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.72 E-value=0.00078 Score=82.64 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=76.9
Q ss_pred eeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHH---HHcCCCCEEEEEEEcCceee-----------eeccc----
Q psy17515 205 FVEAATSPKDIVILLDASSTLSTKHRNLARATINVIL---DTLGSNDFVNIFTFSDVTVE-----------LVPCY---- 266 (1061)
Q Consensus 205 yi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iL---dtL~~~D~v~Vv~Fs~~~~~-----------~~~c~---- 266 (1061)
|.++...|.|+++|||.|+||.. .++.+|..+..|+ ..+..+-|+++..|.+.+.. --||.
T Consensus 104 ~~~~~~~pvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~ 182 (690)
T 3fcs_B 104 VRQVEDYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKT 182 (690)
T ss_dssp EECCBTCCEEEEEEEECSGGGHH-HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSS
T ss_pred EeccCCCCccEEEEecCCcchHH-HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCC
Confidence 34456789999999999999985 3444444444444 34578889999999986531 01331
Q ss_pred ------cccccccCHHhHHHHHHHHhcCCCCCCcch----HHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 267 ------REMLVQATDENKRTLKAALANVKGDNVANF----TGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 267 ------~~~lv~at~~n~~~lk~~I~~l~~~G~Tnl----~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
.-..+.....+...+++.|+.+..+|+-+. .+||..|.---.+. +-+.+..++|||+||..+.
T Consensus 183 ~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~i---gWr~~a~rllv~~TDa~~H 255 (690)
T 3fcs_B 183 TCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKI---GWRNDASHLLVFTTDAKTH 255 (690)
T ss_dssp CCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHH---TCCSSSEEEEEEEESSCBC
T ss_pred CCCCCccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhccccc---CCCCCceEEEEEECCCccc
Confidence 111122334688999999999987776433 23333332100111 1122367899999998776
No 50
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=96.58 E-value=0.0071 Score=75.12 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=104.9
Q ss_pred CCCceEEEEEccCCC-CCcchHHHHHHHHHHHHHHcCCCC--EEEEEEEcCceeeee---------------------cc
Q psy17515 210 TSPKDIVILLDASST-LSTKHRNLARATINVILDTLGSND--FVNIFTFSDVTVELV---------------------PC 265 (1061)
Q Consensus 210 ~~pkdVVILlD~SGS-M~g~~l~~aK~a~~~iLdtL~~~D--~v~Vv~Fs~~~~~~~---------------------~c 265 (1061)
+.|--.+||||+|-. +...-++.++++++..|+.|+++. +||+|+|++.++..- |.
T Consensus 158 p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~ 237 (751)
T 3eh1_A 158 PQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPT 237 (751)
T ss_dssp CCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCC
T ss_pred CCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCCC
Confidence 457889999999842 222347888999999999998866 999999999886421 11
Q ss_pred ccccccccCHHhHHHHHHHHhcCC---CC---CCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcHHH---
Q psy17515 266 YREMLVQATDENKRTLKAALANVK---GD---NVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKE--- 336 (1061)
Q Consensus 266 ~~~~lv~at~~n~~~lk~~I~~l~---~~---G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~~~--- 336 (1061)
-. .+...-.+.+..+...|+.+. +. ..+.++.||+.|+.+|+.. .-.||+++.|.++.+.-
T Consensus 238 ~~-~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~---------GGrI~~F~sg~pt~GpG~l~ 307 (751)
T 3eh1_A 238 PD-SLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT---------GGRVSVFQTQLPSLGAGLLQ 307 (751)
T ss_dssp GG-GTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT---------CEEEEEEECSCCCSSTTCCC
T ss_pred hh-hhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC---------CCEEEEEecCCCCCCCCccc
Confidence 11 111112234555555555552 22 3578999999999998752 12677788887774321
Q ss_pred --------------------------HHHhhCCCCCCeeEEEEEecCC-chhhhhhhhhccCCccceeee
Q psy17515 337 --------------------------VFKHYNWPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIK 379 (1061)
Q Consensus 337 --------------------------i~~~~n~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~ 379 (1061)
...+. ...+|.|-.|.++.+ .+...|..++..+||....-+
T Consensus 308 ~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~--~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~ 375 (751)
T 3eh1_A 308 SREDPNQRSSTKVVQHLGPATDFYKKLALDC--SGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYP 375 (751)
T ss_dssp CCCCSCGGGGSSSCTTCSCSCSHHHHHHHHH--HHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECT
T ss_pred cccccccCCCchhhhhhcchHHHHHHHHHHH--HhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeC
Confidence 00011 134677777777777 999999999999999755433
No 51
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=96.45 E-value=0.0017 Score=75.47 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=78.7
Q ss_pred eeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceee-----------eeccccc--
Q psy17515 205 FVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVE-----------LVPCYRE-- 268 (1061)
Q Consensus 205 yi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~-----------~~~c~~~-- 268 (1061)
|.++...|.|+++|+|.|+||.. .++..|.....|++.| ..+-|+++..|-+.+.. --||...
T Consensus 104 ~~~~~~ypvDLy~LmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~ 182 (472)
T 3t3p_B 104 VRQVEDYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKT 182 (472)
T ss_dssp EECCSSCCEEEEEEEECSGGGHH-HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTS
T ss_pred eecCCCCCceEEEEEccCcchHH-HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCccccc
Confidence 34566789999999999999975 5556666666665554 56779999999886420 1244210
Q ss_pred --------cccccCHHhHHHHHHHHhcCCCCCCcchH----HHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc
Q psy17515 269 --------MLVQATDENKRTLKAALANVKGDNVANFT----GALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA 333 (1061)
Q Consensus 269 --------~lv~at~~n~~~lk~~I~~l~~~G~Tnl~----~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~ 333 (1061)
..+..-..|...+.+.|..+..+|+-+.- +||..|.---++. +=+....+.|||+||..+-.
T Consensus 183 ~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~i---gWR~~a~rllV~~TDa~~H~ 256 (472)
T 3t3p_B 183 TCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKI---GWRNDASHLLVFTTDAKTHI 256 (472)
T ss_dssp CCCCCCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHH---TCCSSSEEEEEEEESSCBCC
T ss_pred CCCCCcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhc---CCCCCceEEEEEECCCCcCc
Confidence 01222346889999999999877764433 3333332100111 11123667999999987763
No 52
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=96.43 E-value=0.017 Score=72.09 Aligned_cols=161 Identities=15% Similarity=0.239 Sum_probs=105.2
Q ss_pred cCCCceEEEEEccCCC-CCcchHHHHHHHHHHHHHHcCCC-------CEEEEEEEcCceeee-------------e----
Q psy17515 209 ATSPKDIVILLDASST-LSTKHRNLARATINVILDTLGSN-------DFVNIFTFSDVTVEL-------------V---- 263 (1061)
Q Consensus 209 a~~pkdVVILlD~SGS-M~g~~l~~aK~a~~~iLdtL~~~-------D~v~Vv~Fs~~~~~~-------------~---- 263 (1061)
.+.|--.+||||+|-. +...-++.++++++..|+.|+++ -+||+|+|++.++.. +
T Consensus 174 ~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~ 253 (770)
T 3efo_B 174 PPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG 253 (770)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence 3567889999999853 43446899999999999999876 499999999987642 1
Q ss_pred ----ccccccccccCHHhHHHHHHHHhcC------CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC-
Q psy17515 264 ----PCYREMLVQATDENKRTLKAALANV------KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS- 332 (1061)
Q Consensus 264 ----~c~~~~lv~at~~n~~~lk~~I~~l------~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~- 332 (1061)
|...+.|+. -.+.+..+...|+.+ .....|.++.|++.|+..+...... -.|++++.|.|+
T Consensus 254 d~f~P~~~~~Lv~-l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~G-------GkI~~F~s~lP~t 325 (770)
T 3efo_B 254 EVFVPLLDGFLVN-YQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCP-------GKLFIFHSSLPTA 325 (770)
T ss_dssp SCCCCCSSSSSBC-TTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCC-------EEEEEEECSCCCS
T ss_pred cccCCCccceeee-HHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCC-------cEEEEEecCCCCc
Confidence 111111222 223344444444444 2345788999999999998753221 266777777555
Q ss_pred cHH-----------------------------HHHHhhCCCCCCeeEEEEEecCC-chhhhhhhhhccCCccceeee
Q psy17515 333 AFK-----------------------------EVFKHYNWPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIK 379 (1061)
Q Consensus 333 ~~~-----------------------------~i~~~~n~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~ 379 (1061)
.+. +...+. ...++.|-.|.++.+ .+...|..++..+||....-+
T Consensus 326 ~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~--~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~ 400 (770)
T 3efo_B 326 EAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDC--VAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYN 400 (770)
T ss_dssp SSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHH--HHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECT
T ss_pred CCCccccccccccccCCcchhhhhcchHHHHHHHHHHH--HHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEec
Confidence 111 011111 134567777777777 999999999999999755433
No 53
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=96.30 E-value=0.018 Score=71.71 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=105.1
Q ss_pred cCCCceEEEEEccCCC-CCcchHHHHHHHHHHHHHHcCCC-------CEEEEEEEcCceeeee-----------------
Q psy17515 209 ATSPKDIVILLDASST-LSTKHRNLARATINVILDTLGSN-------DFVNIFTFSDVTVELV----------------- 263 (1061)
Q Consensus 209 a~~pkdVVILlD~SGS-M~g~~l~~aK~a~~~iLdtL~~~-------D~v~Vv~Fs~~~~~~~----------------- 263 (1061)
.+.|--.+||||+|-. +...-++.++++++..|+.|+++ -+||+|+|++.++..-
T Consensus 170 ~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 170 FPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 4567889999999843 33345789999999999999865 5899999999876421
Q ss_pred ----ccccccccccCHHhHHHHHHHHhcC------CCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCc
Q psy17515 264 ----PCYREMLVQATDENKRTLKAALANV------KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA 333 (1061)
Q Consensus 264 ----~c~~~~lv~at~~n~~~lk~~I~~l------~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~ 333 (1061)
|...+.|+. -.+.+..+...|++| .....|.++.|++.|+..+.... +.-.||+++.|.|+.
T Consensus 250 d~f~P~~~~~lv~-l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~-------~GGkI~~F~s~lP~t 321 (766)
T 3eh2_A 250 DMFVPLLDGFLVN-VNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAE-------CAGKLFLFHTSLPIA 321 (766)
T ss_dssp TCCCCCCTTSSBC-TTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTT-------CCEEEEEEECSCCCS
T ss_pred hhccccccceeEe-HHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCC-------CCcEEEEEecCCCCc
Confidence 111112222 223344444444444 23457889999999999987642 222677777776652
Q ss_pred -HH-----------------------------HHHHhhCCCCCCeeEEEEEecCC-chhhhhhhhhccCCccceeee
Q psy17515 334 -FK-----------------------------EVFKHYNWPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIK 379 (1061)
Q Consensus 334 -~~-----------------------------~i~~~~n~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~ 379 (1061)
+. +...+. ...++.|-.|.++.+ .+...|..++..+||....-+
T Consensus 322 ~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~--~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~ 396 (766)
T 3eh2_A 322 EAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKEC--VAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYA 396 (766)
T ss_dssp SSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHH--HHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECT
T ss_pred CCCcccccccccccCCCcchhhhccchHHHHHHHHHHH--HhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeC
Confidence 21 000111 123566777777777 999999999999999755443
No 54
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=96.24 E-value=0.0043 Score=71.64 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=77.9
Q ss_pred eeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceee----------eeccccc---
Q psy17515 205 FVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVE----------LVPCYRE--- 268 (1061)
Q Consensus 205 yi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~----------~~~c~~~--- 268 (1061)
|.++...|.|+++|+|.|+||.. .++..|.....|++.| ..+-|+|+..|-+.+.. .-||...
T Consensus 115 ~~~~~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c 193 (454)
T 3vi3_B 115 FKRAEDYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNC 193 (454)
T ss_dssp EECCSCCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCC
T ss_pred EecCCCCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCC
Confidence 34556789999999999999975 5556666666666555 46789999999886321 0244210
Q ss_pred ------cccccCHHhHHHHHHHHhcCCCCCCcchHHH-HHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 269 ------MLVQATDENKRTLKAALANVKGDNVANFTGA-LATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 269 ------~lv~at~~n~~~lk~~I~~l~~~G~Tnl~~A-L~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
.-+..-..|...+.+.|+.+..+|+-+.-+| |..-++.+.-...-+=+. ..+.|||+||..+.
T Consensus 194 ~~~f~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~fH 263 (454)
T 3vi3_B 194 TTPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAGFH 263 (454)
T ss_dssp CCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBC
T ss_pred CCCcceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCCcC
Confidence 0122234678999999999988776443322 222122211000001122 66799999998776
No 55
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=96.19 E-value=0.01 Score=63.65 Aligned_cols=103 Identities=15% Similarity=0.095 Sum_probs=70.9
Q ss_pred chhhHHhhhhccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCCC
Q psy17515 637 DAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGP 716 (1061)
Q Consensus 637 ~~~wYkra~~~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~~ 716 (1061)
++.||++|+. .+..+++-||.+...+...+|+.+..|.- +| .+.+|+|+.++++.+.+.+. + .
T Consensus 117 ~~~w~~~a~~-----~~~~~~s~~~~~~~~~~~~~i~~~~pi~~--~g--~~~Gv~~~~i~l~~l~~~~~-~----~--- 179 (274)
T 3lic_A 117 NWDWWSKAIN-----QVGGYWSKAYFDEGAGNVLMITYAVPFGV--QP--DYFGVTTVDLALDRLPEQLG-I----A--- 179 (274)
T ss_dssp SCHHHHTTTT-----TSSCEECCCEECTTTTCSEEEEEEEEESC--TT--CCCEEEEEEEEGGGHHHHHT-S----C---
T ss_pred CCcHHHHHHh-----cCCCEEEeeEEcCCCCceEEEEEEEEEcc--CC--EEEEEEEEEEEHHHHHHHhc-c----C---
Confidence 6789999997 56677888887653222467788877764 33 36799999999999988765 4 1
Q ss_pred CCCCCCCCCCcceeEecCCceEEeccccccc-cccccccc-------HHHHHHhHhC
Q psy17515 717 GCKKTCASDDLDCYVLDNNGFIILSEKYEQT-GLFFGQAD-------GTIMDSLVQD 765 (1061)
Q Consensus 717 ~c~~~C~~~~~~CyliD~~G~iv~S~~~~~~-G~ffg~i~-------~~~m~~l~~~ 765 (1061)
.-..||+|++|-||++.+.+.+ |+-+.++. ..+...+.+.
T Consensus 180 ---------~g~~~l~d~~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (274)
T 3lic_A 180 ---------PSRLVVLDDQGRLIFHSDKEKVLAASSSGWLDKQNIKNIAFATLLNDG 227 (274)
T ss_dssp ---------GGGEEEECTTSCEEECSSHHHHTC----CCSCTTSGGGHHHHHHHHHT
T ss_pred ---------CceEEEECCCCCEEEeCCHHHhhccchhhHhhcccccHHHHHHHHHcC
Confidence 2358999999999999877655 66554433 3555555543
No 56
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=96.02 E-value=0.0035 Score=76.71 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=74.1
Q ss_pred eeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHH---HHcCCCCEEEEEEEcCceeee----------ecccc-----
Q psy17515 206 VEAATSPKDIVILLDASSTLSTKHRNLARATINVIL---DTLGSNDFVNIFTFSDVTVEL----------VPCYR----- 267 (1061)
Q Consensus 206 i~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iL---dtL~~~D~v~Vv~Fs~~~~~~----------~~c~~----- 267 (1061)
.++...|.|+++|||.|+||.. .++.+|..+..|+ ..+..+-|+++..|.+.+... -||..
T Consensus 98 ~~~~~ypvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c 176 (687)
T 3k6s_B 98 RRAKGYPIDLYYLMDLSYSMLD-DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKEC 176 (687)
T ss_dssp CCCCCCCCEEEEEEECSSTTHH-HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCC
T ss_pred eccCCCceeEEEEEcCCcchHH-HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCc
Confidence 3456789999999999999975 3344444444443 446788999999999854310 13311
Q ss_pred -----ccccccCHHhHHHHHHHHhcCCCCCCcchH----HHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 268 -----EMLVQATDENKRTLKAALANVKGDNVANFT----GALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 268 -----~~lv~at~~n~~~lk~~I~~l~~~G~Tnl~----~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
-..+.....+...+.+.|..+..+|+-+.- +||..|.---.+. .- +. ..++|||+||..+.
T Consensus 177 ~~~f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~i-gW--r~-a~rllV~~TDa~~H 246 (687)
T 3k6s_B 177 QPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEI-GW--RN-VTRLLVFATDDGFH 246 (687)
T ss_dssp CCCCSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHH-CC--CS-SCCEEEEECSSCCC
T ss_pred CCcccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhccccc-CC--cc-ceEEEEEECCCccc
Confidence 011222346788999999999877764433 3333322000111 11 12 56799999998876
No 57
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=96.01 E-value=0.0043 Score=72.40 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=77.7
Q ss_pred eeeccCCCceEEEEEccCCCCCcchHHHHHHHHHHHHHHc---CCCCEEEEEEEcCceee----------eeccccc---
Q psy17515 205 FVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVE----------LVPCYRE--- 268 (1061)
Q Consensus 205 yi~aa~~pkdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL---~~~D~v~Vv~Fs~~~~~----------~~~c~~~--- 268 (1061)
|.++...|.|+++|+|.|+||.. .++..|.....|++.| ..+-|+|+..|-+.+.. .-||...
T Consensus 125 ~~~~~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~ 203 (503)
T 3v4v_B 125 FLRAEGYPVDLYYLMDLSYSMKD-DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLER 203 (503)
T ss_dssp EECCSSCCEEEEEEEECSGGGHH-HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSC
T ss_pred EEccCCCceeEEEEEecCcchhh-HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCC
Confidence 44566799999999999999974 5666666666666655 46779999999886421 0134210
Q ss_pred -------cccccCHHhHHHHHHHHhcCCCCCCcchH----HHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCC
Q psy17515 269 -------MLVQATDENKRTLKAALANVKGDNVANFT----GALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332 (1061)
Q Consensus 269 -------~lv~at~~n~~~lk~~I~~l~~~G~Tnl~----~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~ 332 (1061)
.-+..-..|...+.+.|.....+|+-+.- +||..|.---++. .-+ . ..+.|||+||..+-
T Consensus 204 c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~I-gWR--~-a~rllV~~TDA~fH 274 (503)
T 3v4v_B 204 CQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQI-GWR--N-VSRLLVFTSDDTFH 274 (503)
T ss_dssp CCCCCSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHH-TCC--S-SEEEEEEEESSCBC
T ss_pred CCCCcceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhccccc-CCC--c-ceEEEEEECCCCcC
Confidence 00122345788999999999877764433 3333332100111 111 1 35799999998776
No 58
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=96.00 E-value=0.013 Score=60.95 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=67.5
Q ss_pred cchhhHHhhhhccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCC
Q psy17515 636 MDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAG 715 (1061)
Q Consensus 636 i~~~wYkra~~~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~ 715 (1061)
.++.||++|+. .+..+++-||.+... ...+|+.++.|.-.+.| .+.+|+++.++++.+.+.+.++.
T Consensus 90 ~~~~w~~~~~~-----~~~~~~s~~~~~~~~-~~~~i~~~~pi~~~~~g--~~~Gvl~~~i~~~~l~~~~~~~~------ 155 (240)
T 3c8c_A 90 RVRPWYKDAKN-----AGKLVITAPYADSAS-GEILVSVATPVKDSATG--QFLGSIFYDVSLAELAELVNEVK------ 155 (240)
T ss_dssp GGSHHHHHHHH-----HTSCEECCCEECTTT-CCEEEEEEEEEECTTTC--CEEEEEEEEECHHHHHHHHTCSC------
T ss_pred ccChHHHHHHh-----cCCcEEeeceEcCCC-CeEEEEEEEEEEECCCC--eEEEEEEEEEEHHHHHHHHHhcc------
Confidence 35789999996 466778888865422 24678888887642113 35799999999999988765542
Q ss_pred CCCCCCCCCCCcceeEecCCceEEecccccccccc
Q psy17515 716 PGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLF 750 (1061)
Q Consensus 716 ~~c~~~C~~~~~~CyliD~~G~iv~S~~~~~~G~f 750 (1061)
....-..||+|++|.||++.+.+.+|+-
T Consensus 156 -------~~~~g~~~l~d~~G~ii~~~~~~~~~~~ 183 (240)
T 3c8c_A 156 -------LFDAGYVFIVSEDGTTIAHPKKEFNGKP 183 (240)
T ss_dssp -------CTTSEEEEEEETTSBEEECSSGGGTTSB
T ss_pred -------cCCceEEEEEcCCCcEEEeCChhHhcch
Confidence 1223468999999999999877666654
No 59
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=95.81 E-value=0.013 Score=63.47 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=70.0
Q ss_pred cchhhHHhhhhccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCC
Q psy17515 636 MDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAG 715 (1061)
Q Consensus 636 i~~~wYkra~~~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~ 715 (1061)
.++.||++|++ .+..+++-||.+. ...+|+.+..|.. +| .+.+|+|+.++++.+.+.+.++..
T Consensus 122 ~~r~w~~~a~~-----~~~~~~s~p~~~~---~~~~i~~~~pi~~--~g--~~~Gvl~~~i~l~~l~~~~~~~~~----- 184 (290)
T 3lib_A 122 DSSDYYQLPKA-----TEKDVLTEPYFYE---GVFMVSYVSPIMK--EG--EFAGIGGVDVSLEYVDEVVSKVRT----- 184 (290)
T ss_dssp TTSHHHHHHHH-----HCSCEECCCEEET---TEEEEEEEEEEEE--TT--EEEEEEEEEEEHHHHHHHHHHCCB-----
T ss_pred CcchHHHHHHH-----cCCCEEEcCEEeC---CeEEEEEEEEEEE--CC--EEEEEEEEEEeHHHHHHHHHhCCc-----
Confidence 35689999998 3566788888652 2568888888873 34 367999999999999998877631
Q ss_pred CCCCCCCCCCCcceeEecCCceEEecccc-ccccc-cccccc
Q psy17515 716 PGCKKTCASDDLDCYVLDNNGFIILSEKY-EQTGL-FFGQAD 755 (1061)
Q Consensus 716 ~~c~~~C~~~~~~CyliD~~G~iv~S~~~-~~~G~-ffg~i~ 755 (1061)
...-..||+|++|-||++.+. ..+|+ -+.++.
T Consensus 185 --------~~~g~~~l~d~~G~ii~~~~~~~~~g~~~~~~~~ 218 (290)
T 3lib_A 185 --------FDTGYAFMVSNSGVILSHPTHKDWIGKKDLYDFG 218 (290)
T ss_dssp --------TTTBCEEEECTTCBBCCCSSCTTTTTTCBTTTSC
T ss_pred --------CCceEEEEEeCCCeEEEcCCchHhhcccchhhhc
Confidence 123468999999999999873 56673 455544
No 60
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=95.61 E-value=0.015 Score=63.15 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=69.0
Q ss_pred chhhHHhhhhccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCCC
Q psy17515 637 DAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGP 716 (1061)
Q Consensus 637 ~~~wYkra~~~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~~ 716 (1061)
++.||++|++. +..+++-||.+. ...+|+.+..|.. +| .+.+|+|+.++++.+.+.+.++..
T Consensus 124 ~~~w~~~a~~~-----~~~~~s~p~~~~---~~~~i~~~~pi~~--~g--~~~Gvl~~~i~l~~l~~~~~~~~~------ 185 (291)
T 3li9_A 124 SSDYYQLPKTT-----GKDTLTEPYFYE---GIFMVSYDSPIFK--NG--EFAGIAGVDVPLEYVDDVASSIRT------ 185 (291)
T ss_dssp TSHHHHHHHHH-----CSCEECCCEEET---TEEEEEEEEEEEE--TT--EEEEEEEEEEECHHHHHHHTTCCB------
T ss_pred cchHHHHHHHh-----CCCEEEccEEeC---CEEEEEEEEEEEE--CC--EEEEEEEEEeeHHHHHHHHHhCCc------
Confidence 46899999983 556778888652 2568888888873 34 367999999999999988766521
Q ss_pred CCCCCCCCCCcceeEecCCceEEeccc-cccccc-cccccc
Q psy17515 717 GCKKTCASDDLDCYVLDNNGFIILSEK-YEQTGL-FFGQAD 755 (1061)
Q Consensus 717 ~c~~~C~~~~~~CyliD~~G~iv~S~~-~~~~G~-ffg~i~ 755 (1061)
...-..||+|++|-||++.+ ...+|+ -+.++.
T Consensus 186 -------~~~g~~~l~d~~G~ii~~~~~~~~~g~~~~~~~~ 219 (291)
T 3li9_A 186 -------FDTGYAFMVSNTGIFLSHPTQKNWIGEKSLSDFD 219 (291)
T ss_dssp -------TTTBEEEEECTTCBBSCCSSCGGGTTTCBGGGSS
T ss_pred -------CCCeEEEEEeCCCeEEEcCChhHhhCccchhhcc
Confidence 12346899999999999987 356773 455554
No 61
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=95.37 E-value=0.039 Score=57.16 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=64.2
Q ss_pred cchhhHHhhhhccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCC
Q psy17515 636 MDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAG 715 (1061)
Q Consensus 636 i~~~wYkra~~~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~ 715 (1061)
.++.||++|+. .+..+++-||.+... ...+|+.+..|.-. +| ...+|+++.++++.|.+.+..+..
T Consensus 96 ~~r~~f~~a~~-----~~~~~is~~~~~~~~-g~~~i~ia~pi~~~-~g--~~~Gvl~~~i~l~~l~~~~~~~~~----- 161 (217)
T 4dah_A 96 ADRSFFIKAKE-----TKKTVISDSYSSRIT-GQPIFTICVPVLDS-KR--NVTDYLVAAIQIDYLKNLINLLSP----- 161 (217)
T ss_dssp TTSHHHHHHHH-----HCSCEECCCEECTTT-CSEEEEEEEEEECT-TS--CEEEEEEEEEEHHHHHHHHHHHCT-----
T ss_pred chhHHHHHHHh-----cCCcEEeceEEcCCC-CCEEEEEEEEEECC-CC--CEEEEEEEEEcHHHHHHHHHhcCC-----
Confidence 35689999997 466778888865432 25688888888743 33 367999999999999998887731
Q ss_pred CCCCCCCCCCCcceeEecCCceEEecccc
Q psy17515 716 PGCKKTCASDDLDCYVLDNNGFIILSEKY 744 (1061)
Q Consensus 716 ~~c~~~C~~~~~~CyliD~~G~iv~S~~~ 744 (1061)
.-..||+|.+|.||++.+.
T Consensus 162 ----------gg~~~l~d~~G~ii~~~~~ 180 (217)
T 4dah_A 162 ----------DVYIEVVNQDGKMIFASGQ 180 (217)
T ss_dssp ----------TSCEEEEETTSCEEEEESC
T ss_pred ----------CcEEEEEcCCCCEEEeCCC
Confidence 1358999999988888764
No 62
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=95.37 E-value=0.042 Score=58.19 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=72.2
Q ss_pred cchhhHHhhhhccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCC
Q psy17515 636 MDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAG 715 (1061)
Q Consensus 636 i~~~wYkra~~~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~ 715 (1061)
.++.||++|++.. .+..+++-||.+... ...+|+.++.|.-.+ | ...+|+++.++++.|.+.+..+..
T Consensus 96 ~~r~~f~~a~~~~---~~~~~is~p~~~~~~-g~~~i~~~~pi~~~~-g--~~~Gvl~~~i~l~~l~~~~~~~~~----- 163 (254)
T 3lif_A 96 SDRSYFRYHRAND---DHTLLITGPIQSRTS-GVWVFVVSRRLETTD-G--KFFGVVVATIESEYFSTFYKTFDL----- 163 (254)
T ss_dssp TTSHHHHHHHHCC---CCCCEEEEEEECTTT-CCEEEEEEEEEECTT-C--CEEEEEEEEECHHHHHHHHTTSCC-----
T ss_pred ccHHHHHHHHhCC---CCCeEECCceecCCC-CcEEEEEEeeeeCCC-C--CEeEEEEEEECHHHHHHHHHhcCc-----
Confidence 4568999999842 467788888866422 356888888887533 3 367999999999999987765521
Q ss_pred CCCCCCCCCCCcceeEecCCceEEec-ccccccccccccccHHHHHHhH
Q psy17515 716 PGCKKTCASDDLDCYVLDNNGFIILS-EKYEQTGLFFGQADGTIMDSLV 763 (1061)
Q Consensus 716 ~~c~~~C~~~~~~CyliD~~G~iv~S-~~~~~~G~ffg~i~~~~m~~l~ 763 (1061)
...-..+|+|.+|.||++ .+... |+-+. +..++..++
T Consensus 164 --------~~~g~~~l~d~~G~ii~~~p~~~~-g~~~~--~~~~~~~~~ 201 (254)
T 3lif_A 164 --------GPGGSISLLHSDGRLLIQWPSLQT-GRDMA--NMVLFQKAL 201 (254)
T ss_dssp --------CTTCEEEEEETTSBEEEEETTCCC-SCBCT--TSHHHHTHH
T ss_pred --------CCCcEEEEEeCCCcEEEECCCCcc-CCCcc--cchhHHhhh
Confidence 234568999999999998 44444 55443 234455544
No 63
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=95.12 E-value=0.11 Score=54.69 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=66.7
Q ss_pred cchhhHHhhhhccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCC
Q psy17515 636 MDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAG 715 (1061)
Q Consensus 636 i~~~wYkra~~~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~ 715 (1061)
.++.||++|+.. ++.. ++ +.+.. ....+|+.++.|. . +|+ ..+|+++.++++.+.+.+.
T Consensus 102 ~~r~~~~~a~~~----~~~~-~~--~~~~~-~g~~~i~~~~pi~-~-~g~--~~Gvv~~~i~l~~l~~~~~--------- 160 (260)
T 3by9_A 102 AWRPYFYLSIAG----QKSQ-YF--ALGST-SGQRGYYYAYPVI-Y-AAE--ILGVIVVKMDLSAIEQGWQ--------- 160 (260)
T ss_dssp TTSHHHHHHTTT----SCEE-EE--EECTT-TCCEEEEEEEEEE-E-TTE--EEEEEEEEECSHHHHHTCC---------
T ss_pred ccCHHHHHHHhC----CCce-EE--EEecC-CCCEEEEEEEEEc-c-CCe--EEEEEEEEEeHHHHHHHHh---------
Confidence 356899999973 2332 22 22221 2246888999998 3 343 6799999999987665432
Q ss_pred CCCCCCCCCCCcceeEecCCceEEecccccccccccccccHHHHHHh
Q psy17515 716 PGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSL 762 (1061)
Q Consensus 716 ~~c~~~C~~~~~~CyliD~~G~iv~S~~~~~~G~ffg~i~~~~m~~l 762 (1061)
...-.+||+|.+|.||++.+.+.+++-+..+.+.-...+
T Consensus 161 --------~~~g~~~l~d~~G~ii~~~~~~~~~~~~~~~~~~~~~~~ 199 (260)
T 3by9_A 161 --------NKSSYFVATDDHQVVFMSSQPAWLFHSVADLSPAQLNDI 199 (260)
T ss_dssp --------CSSCEEEEECTTCBEEEESSGGGTTCBSSCCCHHHHHHH
T ss_pred --------cCCCcEEEECCCCeEEEcCChHhcccccCCCCHHHHHHH
Confidence 123469999999999999988878777666666544444
No 64
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=94.84 E-value=0.17 Score=56.12 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=78.8
Q ss_pred cchhhHHhhhhccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCCC
Q psy17515 636 MDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAG 715 (1061)
Q Consensus 636 i~~~wYkra~~~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~~ 715 (1061)
.++.||++|+.. +..++.. ... .....+++.+..|.- +| .+++||++.++++.+.+.+...
T Consensus 143 ~~R~yf~~Al~g-----~~~~~~~-~~~--~tg~~~i~~a~PV~~--~G--~viGVv~v~i~l~~l~~~~~~~------- 203 (305)
T 3e4o_A 143 AFRDYFRLAVRD-----GMAEHFA-MGT--VSKRPGLYISRRVDG--PG--GPLGVIVAKLEFDGVEADWQAS------- 203 (305)
T ss_dssp TTSHHHHHHHHH-----SEEEEEE-ECT--TTCCEEEEEEEEEEE--TT--EEEEEEEEEECCHHHHHHHHHH-------
T ss_pred cccHHHHHHHhc-----CCcEEEE-Eec--CCCCEEEEEEEEEcc--CC--eEEEEEEEEEcHHHHHHHHhcC-------
Confidence 467899999984 3333322 111 122467888888863 34 3689999999999999877542
Q ss_pred CCCCCCCCCCCcceeEecCCceEEecccccccccccccccHHHHHHhHhCCcccee
Q psy17515 716 PGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRV 771 (1061)
Q Consensus 716 ~~c~~~C~~~~~~CyliD~~G~iv~S~~~~~~G~ffg~i~~~~m~~l~~~~if~~~ 771 (1061)
.-..||+|.+|.|+++.+.+-..+-+..+.+.....+....-|..-
T Consensus 204 ----------~g~~~l~D~~G~ii~~~~~~~~~~~l~~l~~~~~~~i~~~~qy~~~ 249 (305)
T 3e4o_A 204 ----------GKPAYVTDRRGIVLITSLPSWRFMTTKPIAEDRLAPIRESLQFGDA 249 (305)
T ss_dssp ----------TSCEEEECTTCBEEEESSGGGTTCBSSCCCHHHHHHHHHTTTTTTC
T ss_pred ----------CceEEEEcCCCeEEEeCChhhccccCCCCCHHHHHHHHHhhccccC
Confidence 1248999999999999998888888999999988888777665543
No 65
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=93.81 E-value=0.037 Score=64.43 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=47.6
Q ss_pred eeeccccccccccc-----CCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHH
Q psy17515 392 VLVMARPLIMYQTE-----HPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQI 466 (1061)
Q Consensus 392 ~d~larp~~~~~~~-----~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L 466 (1061)
++...||||+.++. ++.++|+||.|..+ +.+++|++.||+ . + .|+++|++++.|
T Consensus 366 ~n~s~Rpyf~~a~~~~~~~~~~~iS~pY~s~~t----------g~~~iTis~~i~-~-------~---~vl~~Di~l~~l 424 (431)
T 2bas_A 366 KNWSWRPYFLENIMRMRNLRKGFFSDLYSDLET----------GEMIRTFSYPMD-D-------Q---MYLFIDLPYSYL 424 (431)
T ss_dssp CBCTTSTTHHHHHHHHHHHCCCEECCCEECTTT----------CSEEEEEEEEET-T-------T---EEEEEEECHHHH
T ss_pred CCccccHHHHHHHhhcccCCceEECCcEEcccC----------CCcEEEEEEEec-C-------C---EEEEEECcHHHH
Confidence 47778999998755 77999999999986 589999999997 2 2 499999999887
Q ss_pred Hhh
Q psy17515 467 QKL 469 (1061)
Q Consensus 467 ~~l 469 (1061)
.+.
T Consensus 425 ~~~ 427 (431)
T 2bas_A 425 YEQ 427 (431)
T ss_dssp TTS
T ss_pred Hhh
Confidence 653
No 66
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=92.80 E-value=0.17 Score=55.62 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=70.1
Q ss_pred cchhhHHhhhhccCCCCCcEEEeccCCCCC------CCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhc
Q psy17515 636 MDAIWFKRAVDQHNIEPDSFVFSVPHNSGP------RGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINIT 709 (1061)
Q Consensus 636 i~~~wYkra~~~~~~~~~~~v~s~p~~~~~------~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t 709 (1061)
.++.||+.|+... ++.+..+ |+.... .....+|+.++.|+ . +|+ +.+|+++.++++.+.+.+. ..
T Consensus 114 ~~R~yf~~a~~~~---~~~~~~s-~~~~~~~~g~~~~~~~p~i~~a~pV~-~-~g~--~~GVlv~~i~l~~l~~~~~-~~ 184 (295)
T 3lid_A 114 SAREYFKYAQSLD---NEQISAW-GIELERDKGELVYPLSPSLRILMPIS-V-NDV--RQGYLVLNVDIEYLSSLLN-YS 184 (295)
T ss_dssp TTSHHHHHHHHSC---TTCCEEC-CCEECEETTEECSSCCEEEEEEEEEE-E-TTE--EEEEEEEEEEHHHHHHHHS-EE
T ss_pred hhhHHHHHHhcCC---CCcEEEe-CceecccCCcccCCCCCEEEEEEEEc-c-CCe--EEEEEEEEecHHHHHHHHh-hc
Confidence 4578999998742 4555444 443211 01246888999997 3 343 6799999999999988863 32
Q ss_pred ccCCCCCCCCCCCCCCCcceeEecCCceEEecccccc-ccccccc--------ccHHHHHHhHhC
Q psy17515 710 SACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQ-TGLFFGQ--------ADGTIMDSLVQD 765 (1061)
Q Consensus 710 ~~C~~~~~c~~~C~~~~~~CyliD~~G~iv~S~~~~~-~G~ffg~--------i~~~~m~~l~~~ 765 (1061)
. ...-.-||+|++|+++++.+.+. .|.-|++ ..|.+...|...
T Consensus 185 ~-------------~~~~~~~l~d~~G~~l~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~i~~~ 236 (295)
T 3lid_A 185 P-------------VRDFHIELVKHKGFYIASPDESRLYGDIIPERSQFNFSNMYPDIWPRVVSE 236 (295)
T ss_dssp T-------------TTTEECEEEETTSBEEECSCGGGBTTTTCGGGTTCBHHHHCTTTHHHHHTT
T ss_pred c-------------cCCCcEEEEcCCCCEEecCCcccchhcccccccccchhhhChHHHHHHhhC
Confidence 0 12345799999999999997644 3544443 235555655543
No 67
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=72.72 E-value=1.7 Score=50.29 Aligned_cols=56 Identities=13% Similarity=-0.074 Sum_probs=44.6
Q ss_pred cchhhHHhhhh---ccCCCCCcEEEeccCCCCCCCCCceEEEEEEEEeccCCcccceeEEEEEechhHHHHH
Q psy17515 636 MDAIWFKRAVD---QHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASH 704 (1061)
Q Consensus 636 i~~~wYkra~~---~~~~~~~~~v~s~p~~~~~~~~~~~vtaS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~ 704 (1061)
....||++|+. . ++..++|-||.+... ....||+|.+|. +++ |+|+.++++.+.+.
T Consensus 369 s~Rpyf~~a~~~~~~----~~~~~iS~pY~s~~t-g~~~iTis~~i~---~~~-----vl~~Di~l~~l~~~ 427 (431)
T 2bas_A 369 SWRPYFLENIMRMRN----LRKGFFSDLYSDLET-GEMIRTFSYPMD---DQM-----YLFIDLPYSYLYEQ 427 (431)
T ss_dssp TTSTTHHHHHHHHHH----HCCCEECCCEECTTT-CSEEEEEEEEET---TTE-----EEEEEECHHHHTTS
T ss_pred cccHHHHHHHhhccc----CCceEECCcEEcccC-CCcEEEEEEEec---CCE-----EEEEECcHHHHHhh
Confidence 45689999988 6 688889999988643 368999999987 232 89999999887653
No 68
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=68.48 E-value=5.8 Score=38.18 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=30.4
Q ss_pred CcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHHhhccCC
Q psy17515 430 GKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQY 473 (1061)
Q Consensus 430 ~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~~ll~~~ 473 (1061)
++..+.++.||++. +|+++||+++.++++.+.+.+..+
T Consensus 103 ~g~~~~~~~PV~~~------~g~viGvv~vg~~~~~~~~~~~~~ 140 (142)
T 3by8_A 103 LAQALRVFTPIYDE------NHKQIGVVAIGLELSRVTQQINDS 140 (142)
T ss_dssp SSCEEEEEEEEECT------TSCEEEEEEEEEEHHHHHHHHHC-
T ss_pred cEEEEEEEEeEEcC------CCCEEEEEEEeEEHHHHHHHHHHh
Confidence 35677778899964 289999999999999999877544
No 69
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=56.31 E-value=7.6 Score=36.71 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=26.5
Q ss_pred CcEEEEEEEEEeeCCcccccCCcEEEEEEEEechHHHH
Q psy17515 430 GKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQ 467 (1061)
Q Consensus 430 ~~lviTvs~PV~d~~~~~~~~g~llGVvg~DV~L~~L~ 467 (1061)
++..+..+.||++. +|+++||+++.++++.|.
T Consensus 98 ~g~~~~~~~PV~~~------~g~viGvv~vg~~l~~v~ 129 (131)
T 1p0z_A 98 LGSSLRGKSPIQDA------TGKVIGIVSVGYTIEQLE 129 (131)
T ss_dssp TEEEEEEEEEEECT------TCCEEEEEEEEEEGGGCC
T ss_pred ceeeEEEEEeEECC------CCCEEEEEEEEEEhHHhh
Confidence 46788888899974 289999999999998764
No 70
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=39.82 E-value=1.3e+02 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=24.1
Q ss_pred HHHhhccCCc--cCCceEEEEEeCCCcEEEcCCCCccc
Q psy17515 465 QIQKLVPQYK--LGPNGYSFVVNNNGRIIYHPDFRPLY 500 (1061)
Q Consensus 465 ~L~~ll~~~k--lG~~GY~flVd~nG~VL~HPdl~~~~ 500 (1061)
.++.++..++ .|. .|++++|.+|.+++||+...++
T Consensus 36 ~l~~~~~~~~~~~~~-~~i~v~d~~G~~~a~~~~~~iG 72 (131)
T 1p0z_A 36 RIKALIDPMRSFSDA-TYITVGDASGQRLYHVNPDEIG 72 (131)
T ss_dssp HHHHHHHHHHHHSCC-SEEEEEETTSBEEECSSGGGTT
T ss_pred HHHHHHHHHHHhcCC-CEEEEEcCCCcEEEecChhhCC
Confidence 3444444432 233 4999999999999999866554
Done!