RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17515
(1061 letters)
>gnl|CDD|238740 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium channel like:
Voltage-gated calcium channels are a complex of five
proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
alpha 2 and delta subunits result from proteolytic
processing of a single gene product and carries at its
N-terminus the VWA and cache domains, The alpha 2 delta
gene family has orthologues in D. melanogaster and C.
elegans but none have been detected in aither A.
thaliana or yeast. The exact biochemical function of the
VWA domain is not known but the alpha 2 delta complex
has been shown to regulate various functional properties
of the channel complex.
Length = 190
Score = 211 bits (539), Expect = 6e-63
Identities = 90/190 (47%), Positives = 128/190 (67%), Gaps = 7/190 (3%)
Query: 200 RSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVT 259
R+ +W+++AATSPKDIVILLD S +++ + +LA+ T++ ILDTL NDF NI TFS+
Sbjct: 1 RNRSWYIQAATSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEV 60
Query: 260 VELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHK---YNRTNQG 316
+VPC+ + LVQAT NK+ LK AL ++ +AN+T AL AF +L K N +
Sbjct: 61 NPVVPCFNDTLVQATTSNKKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSR 120
Query: 317 CQCNQAIMLVSSGPPSAFKEVFKHYNWPH---MPVRLFSYLIGKSS-NYAEMKQMACSNK 372
QCNQAIML++ G P +KE+F YNW +PVR+F+YLIG+ + E++ MAC NK
Sbjct: 121 SQCNQAIMLITDGVPENYKEIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMACENK 180
Query: 373 GYFEFIKNTD 382
GY+ I++ D
Sbjct: 181 GYYSHIQSLD 190
>gnl|CDD|219821 pfam08399, VWA_N, VWA N-terminal. This domain is found at the
N-terminus of proteins containing von Willebrand factor
type A (VWA, pfam00092) and Cache (pfam02743) domains.
It has been found in vertebrates, Drosophila and C.
elegans but has not yet been identified in other
eukaryotes. It is probably involved in the function of
some voltage-dependent calcium channel subunits.
Length = 123
Score = 112 bits (283), Expect = 3e-29
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 84 NVKYLDSRKLLHI----PIHEKPTSANEMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPD 139
N +Y +++ + + + E E+ + + HF+ VNTS SSV LP +
Sbjct: 18 NFQYYNAKYINELDSDGNLAELGDCCRELLLEEDPHFNNLPVNTSVSSVQLPTNVYNR-S 76
Query: 140 EQILNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKW 186
+ILNA+ WSE LD VF +N+E+DPSL+WQYFGS GF R YPA KW
Sbjct: 77 PEILNALNWSEALDSVFADNFESDPSLTWQYFGSATGFFRYYPATKW 123
>gnl|CDD|217211 pfam02743, Cache_1, Cache domain.
Length = 81
Score = 86.2 bits (214), Expect = 2e-20
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 426 DVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVN 485
D G ++++++ PV+D+ +LLGV +DV ++ + K+ KLG GY+F+V+
Sbjct: 7 DASTGDMVITIAQPVYDRDG------DLLGVIGIDVSLEDLLKITKSIKLGKTGYAFIVD 60
Query: 486 NNGRIIYHPDFRPLYVERLKP 506
NNG+++ HP+ +P+
Sbjct: 61 NNGKVLAHPNHQPVTKLLGDW 81
>gnl|CDD|238738 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin
inhibitor (ITI): ITI is a glycoprotein composed of three
polypeptides- two heavy chains and one light chain
(bikunin). Bikunin confers the protease-inhibitor
function while the heavy chains are involved in
rendering stability to the extracellular matrix by
binding to hyaluronic acid. The heavy chains carry the
VWA domain with a conserved MIDAS motif. Although the
exact role of the VWA domains remains unknown, it has
been speculated to be involved in mediating
protein-protein interactions with the components of the
extracellular matrix.
Length = 171
Score = 71.9 bits (177), Expect = 2e-14
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 19/182 (10%)
Query: 212 PKDIVILLDASSTLS-TKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREML 270
PK++V ++D S ++S TK + + L L D+ NI FSD E P
Sbjct: 2 PKEVVFVIDTSGSMSGTKIEQ-TKEALLTALKDLPPGDYFNIIGFSDTVEEFSPS----S 56
Query: 271 VQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSG- 329
V AT EN + ++ N AL A E+L+ + I+L++ G
Sbjct: 57 VSATAENVAAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQ------IILLTDGE 110
Query: 330 ---PPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRM 386
K V + + RLF++ IG N ++++A +G I TD +
Sbjct: 111 VTNESQILKNVREALSGRI---RLFTFGIGSDVNTYLLERLAREGRGIARRIYETDDIES 167
Query: 387 KV 388
++
Sbjct: 168 QL 169
>gnl|CDD|238743 cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Willebrand factor type
A (vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Membes of this subgroup belong to Zinc-finger
family as they are found fused to RING finger domains.
The MIDAS motif is not conserved in all the members of
this family. The function of vWA domains however is not
known.
Length = 155
Score = 65.5 bits (160), Expect = 2e-12
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 214 DIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQA 273
D+V +LD S +++ L + + ++ +LG D ++I TFS L P L +
Sbjct: 2 DLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSP-----LRRM 56
Query: 274 TDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSA 333
T + KR+ K + ++ N G L A ++L + N +IML+S G +
Sbjct: 57 TAKGKRSAKRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPV----ASIMLLSDGQDNH 112
Query: 334 FKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIK 379
V + N P+ + ++ +G S + A + +A G F ++K
Sbjct: 113 GAVVLRADN---APIPIHTFGLGASHDPALLAFIAEITGGTFSYVK 155
>gnl|CDD|222367 pfam13768, VWA_3, von Willebrand factor type A domain.
Length = 156
Score = 63.6 bits (155), Expect = 1e-11
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 213 KDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQ 272
D+VIL+D SS++S + NL + ++ IL +L D N+ F L P R +
Sbjct: 1 GDVVILVDVSSSMSGEPINLVKDALSAILRSLPPRDKFNVVLFGTEPRPLFPGGRAVSSS 60
Query: 273 ATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPS 332
E + +K + G N+ GAL A R + + ++L+S G PS
Sbjct: 61 HLQELLQFIKTLEPPLGGTNLL---GALKLAM-------RALKSPGIIRHVLLLSDGSPS 110
Query: 333 AFKEVFKHYNWPHM-PVRLFSYLIGKSSNYAEMKQMACSNKGYFEF 377
+R+F+Y +G + + ++++A + G +EF
Sbjct: 111 DNPSRTSQLIRQAPRHIRIFAYGLGPTLSPDMLQELAEAGGGSYEF 156
>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain. VWA
domains in extracellular eukaryotic proteins mediate
adhesion via metal ion-dependent adhesion sites (MIDAS).
Intracellular VWA domains and homologues in prokaryotes
have recently been identified. The proposed VWA domains
in integrin beta subunits have recently been
substantiated using sequence-based methods.
Length = 175
Score = 62.5 bits (152), Expect = 4e-11
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 214 DIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYREML 270
D+V LLD S ++ LA+ + +++ L D V + TFSD L P
Sbjct: 1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDS-- 58
Query: 271 VQATDENKRTLKAALANV--KGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSS 328
+K L ALA++ K N AL A E L + ++ + ++L++
Sbjct: 59 -----RSKDALLEALASLSYKLGGGTNLGAALQYALENLFSKSAGSRR-GAPKVVILITD 112
Query: 329 G----PPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEF 377
G P + K V++F +G + E+K++A + G + F
Sbjct: 113 GESNDGPKDLLKAAK--ELKRSGVKVFVVGVGNDVDEEELKKLASAPGGVYVF 163
>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is
made up of approximately 200 amino acid residues folded
into a classic a/b para-rossmann type of fold. The vWA
domain, since its discovery, has drawn great interest
because of its widespread occurrence and its involvement
in a wide variety of important cellular functions. These
include basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains.
Length = 161
Score = 56.8 bits (137), Expect = 3e-09
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 18/171 (10%)
Query: 214 DIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYREML 270
DIV LLD S ++ + + A+ + ++ +L D V + TF ++P
Sbjct: 2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLP------ 55
Query: 271 VQATDENKRTLKAALANVKGDNVA--NFTGALATAFEILHKYNRTNQGCQCNQAIMLVSS 328
TD +K L A+ +K N AL A E+L R N + I+L++
Sbjct: 56 -LTTDTDKADLLEAIDALKKGLGGGTNIGAALRLALELLKSAKRPNAR----RVIILLTD 110
Query: 329 GPPSAFKEVFKHY--NWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEF 377
G P+ E+ + + +++ IG +N E+K++A G F
Sbjct: 111 GEPNDGPELLAEAARELRKLGITVYTIGIGDDANEDELKEIADKTTGGAVF 161
>gnl|CDD|234353 TIGR03788, marine_srt_targ, marine proteobacterial sortase target
protein. Members of this protein family are restricted
to the Proteobacteria. Each contains a C-terminal
sortase-recognition motif, transmembrane domain, and
basic residues cluster at the the C-terminus, and is
encoded adjacent to a sortase gene. This protein is
frequently the only sortase target in its genome, which
is as unusual its occurrence in Gram-negative rather
than Gram-positive genomes. Many bacteria with this
system are marine. In addition to the LPXTG signal,
members carry a vault protein inter-alpha-trypsin
inhibitor domain (pfam08487) and a von Willebrand factor
type A domain (pfam00092).
Length = 596
Score = 49.3 bits (118), Expect = 9e-06
Identities = 44/199 (22%), Positives = 85/199 (42%), Gaps = 15/199 (7%)
Query: 205 FVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVP 264
A P+++V ++D S +++ + A++ + + LD L D NI F L P
Sbjct: 264 AAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLLFP 323
Query: 265 CYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCN---Q 321
+ V AT N + +A ++ D GAL+ A + G + + +
Sbjct: 324 ----VPVPATAHNLARARQFVAGLQADGGTEMAGALSAAL--------RDDGPESSGALR 371
Query: 322 AIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNT 381
++ ++ G +F+ RLF+ IG + N M++ A +G F FI +T
Sbjct: 372 QVVFLTDGAVGNEDALFQLIRTKLGDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGST 431
Query: 382 DRLRMKVFNYVLVMARPLI 400
D ++ K+ + +P +
Sbjct: 432 DEVQRKMSQLFAKLEQPAL 450
>gnl|CDD|215711 pfam00092, VWA, von Willebrand factor type A domain.
Length = 178
Score = 44.7 bits (106), Expect = 6e-05
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 17/126 (13%)
Query: 214 DIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYREML 270
DIV LLD S ++ + + I +++ L V + +S L
Sbjct: 1 DIVFLLDGSGSIGEANFEKVKEFIKKLVERLDIGPDGTRVGLVQYSSDVTTEFS-----L 55
Query: 271 VQATDENKRTLKAALANVKGDNVANFTG-ALATAFEIL---HKYNRTNQGCQCNQAIMLV 326
++ L A N+ TG AL A E L +R N + ++L+
Sbjct: 56 NDYKSKDDL-LSAVSKNIYYLGGGTNTGKALKYALENLFSSSAGSRPNA----PKVVILL 110
Query: 327 SSGPPS 332
+ G +
Sbjct: 111 TDGKSN 116
>gnl|CDD|117050 pfam08473, VGCC_alpha2, Neuronal voltage-dependent calcium channel
alpha 2acd. This eukaryotic domain has been found in
the neuronal voltage-dependent calcium channel (VGCC)
alpha 2a, 2c, and 2d subunits. It is also found in other
calcium channel alpha-2 delta subunits to the N-terminus
of a Cache domain (pfam02743).
Length = 94
Score = 42.0 bits (98), Expect = 9e-05
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 529 NSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGY 588
+ + +D+R+ MID + GE F + + R + Y + P+ YSL L LPD Y
Sbjct: 7 DDIKVDIRNKMIDGERGEIRFHTLMKSQDERYIDKGFRTYTWSPVNDADYSLALVLPD-Y 65
Query: 589 GLYEV 593
+
Sbjct: 66 SFSYI 70
>gnl|CDD|222192 pfam13519, VWA_2, von Willebrand factor type A domain.
Length = 172
Score = 43.1 bits (102), Expect = 2e-04
Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 30/184 (16%)
Query: 214 DIVILLDAS-STLST----KHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYRE 268
D+VI+LD S S +T A+A I +L L D V + F+
Sbjct: 1 DLVIVLDVSGSMNATDLKPSRLTRAKAAIADLLARLP-GDRVGLIAFAG---------SA 50
Query: 269 MLVQATDENKRTLKAALANVKGDNVA----NFTGALATAFEILHKYNRTNQGCQCNQAIM 324
LV +++ L AAL + + N ALA A +L + AI+
Sbjct: 51 YLVLPLTDDRAALAAALPALSPRIMPGGGTNLAAALALALRLLAGAG------GGSGAIV 104
Query: 325 LVSSG-PPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAE-MKQMACSNKG-YFEFIKNT 381
L++ G + E VR++ +G + ++++A + G Y + +
Sbjct: 105 LITDGEDTPSLLEAASALK--QAGVRVYVLGVGTDEGAEDALQRLAKATGGRYVDATADA 162
Query: 382 DRLR 385
L
Sbjct: 163 ADLD 166
>gnl|CDD|238727 cd01450, vWFA_subfamily_ECM, Von Willebrand factor type A (vWA)
domain was originally found in the blood coagulation
protein von Willebrand factor (vWF). Typically, the vWA
domain is made up of approximately 200 amino acid
residues folded into a classic a/b para-rossmann type of
fold. The vWA domain, since its discovery, has drawn
great interest because of its widespread occurrence and
its involvement in a wide variety of important cellular
functions. These include basal membrane formation, cell
migration, cell differentiation, adhesion, haemostasis,
signaling, chromosomal stability, malignant
transformation and in immune defenses In integrins
these domains form heterodimers while in vWF it forms
multimers. There are different interaction surfaces of
this domain as seen by the various molecules it
complexes with. Ligand binding in most cases is mediated
by the presence of a metal ion dependent adhesion site
termed as the MIDAS motif that is a characteristic
feature of most, if not all A domains .
Length = 161
Score = 36.9 bits (86), Expect = 0.018
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 214 DIVILLDASSTLSTKHRNLARATI-NVI--LDTLGSNDFVNIFTFSD-VTVELVPCYREM 269
DIV LLD S ++ ++ + I ++ LD V + +SD V VE
Sbjct: 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSL----- 56
Query: 270 LVQATDENKRTLKAALANVK--GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVS 327
++K L A+ N+K G N AL A E L ++ +N + I++++
Sbjct: 57 ---NDYKSKDDLLKAVKNLKYLGGGGTNTGKALQYALEQL--FSESNARENVPKVIIVLT 111
Query: 328 SGPPS 332
G
Sbjct: 112 DGRSD 116
>gnl|CDD|217954 pfam04191, PEMT, Phospholipid methyltransferase. The S. cerevisiae
phospholipid methyltransferase (EC:2.1.1.16) has a broad
substrate specificity of unsaturated phospholipids.
Length = 106
Score = 33.7 bits (78), Expect = 0.11
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 746 QTGLFFGQADGTIMDSLVQDGIYKRV--PMY 774
G F+G G +MD LV G Y+ + PMY
Sbjct: 26 IFGTFYGDFFGILMDELVTGGPYRYLRNPMY 56
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 35.4 bits (81), Expect = 0.18
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 859 TEAPVYSDYDQNYDTDQSFPESDMDGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNE 918
E+ V + +QN DT S +S+ D D E D ++ + K+QP
Sbjct: 95 QESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQP---------- 144
Query: 919 TPPPPTITSTSPPTKTTKTSPPRLHARTCQKRADLFILQPGRLNNSGLFNPPFSV 973
+ ++TS TK S L A + D + Q G + GL P V
Sbjct: 145 GVSTSSGSTTSGTDLNTKQSQTGLGASGSHAQQDPAVSQSGVVGVPGLGVPGVGV 199
>gnl|CDD|234208 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain.
Members of this family are bacterial domains that
include a region related to the von Willebrand factor
type A (VWFA) domain (pfam00092). These domains are
restricted to, and have undergone a large paralogous
family expansion in, the Acidobacteria, including
Solibacter usitatus and Acidobacterium capsulatum ATCC
51196.
Length = 296
Score = 34.6 bits (80), Expect = 0.23
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 189 DGVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDT-LGSN 247
DG P Q + FR P + +++D S + + ARA L T L N
Sbjct: 37 DGKP-QTIASFR----RETDL--PLTVGLVIDTSGS-MRNDLDRARAAAIRFLKTVLRPN 88
Query: 248 DFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289
D V + TF+ +L T + R L+AAL +K
Sbjct: 89 DRVFVVTFNTRL--------RLLQDFTS-DPRLLEAALNRLK 121
>gnl|CDD|214995 smart01049, Cache_2, Cache is an extracellular domain that is
predicted to have a role in small-molecule recognition
in a wide range of proteins. Members include the animal
dihydropyridine-sensitive voltage-gated Ca2+ channel;
alpha-2delta subunit, and various bacterial chemotaxis
receptors. The name Cache comes from CAlcium channels
and CHEmotaxis receptors. This domain consists of an
N-terminal part with three predicted strands and an
alpha-helix, and a C-terminal part with a strand dyad
followed by a relatively unstructured region. The
N-terminal portion of the (unpermuted) Cache domain
contains three predicted strands that could form a sheet
analogous to that present in the core of the PAS domain
structure. Cache domains are particularly widespread in
bacteria, with Vibrio cholerae. The animal calcium
channel alpha-2delta subunits might have acquired a part
of their extracellular domains from a bacterial source.
The Cache domain appears to have arisen from the GAF-PAS
fold despite their divergent functions.
Length = 91
Score = 31.5 bits (72), Expect = 0.44
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 444 RNYTTRAANLL---------GVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHP 494
+N A +++ G + Q + + + G +GY FV +++G ++ HP
Sbjct: 10 KNLVEIAVSIVEAYYAQAAAGKLTEEEAQAQAKAALRALRYGGDGYFFVYDSDGVMLMHP 69
Query: 495 DFRPLYVERLKPNYNNVDLSEVE 517
KP +LS+++
Sbjct: 70 ---------AKPELEGKNLSDLK 83
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 33.0 bits (75), Expect = 0.81
Identities = 26/93 (27%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 872 DTDQSFPESDMDGDGDESMDLEAAM--DETMSEVTKSQPIDPPPIADNET-------PPP 922
D D SFP SD + + DE D+E + D+ + T PPP
Sbjct: 224 DIDPSFPTSDPEDEEDELDDVEEVIESDDHFFLDLDGERGRRRRKRSPRTSPKRFRSPPP 283
Query: 923 -------PTITSTSPPTKTTKTSPPRLHARTCQ 948
P SPP SPP LHA
Sbjct: 284 RKARGRSPRRLIRSPPPPGRLRSPPPLHASDSP 316
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 32.4 bits (74), Expect = 0.93
Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 874 DQSFPESDMD------GDGDESMDLEAAMDETMSE-VTKSQPIDPPPIADNETPPPPTIT 926
D F + +MD G G D E + T S K P D T T T
Sbjct: 41 DDEFIDDEMDDEYSGSGSGATPSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKT 100
Query: 927 STSPPTKTTKTSPPRLHART 946
S + T T T+ P
Sbjct: 101 SPTVSTTVTTTTSPSETDTE 120
>gnl|CDD|178744 PLN03205, PLN03205, ATR interacting protein; Provisional.
Length = 652
Score = 32.8 bits (74), Expect = 1.0
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 883 DGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNETPPPPTITSTSPPTKTTKT--SPP 940
D D D+ + ++ ++ + + PPP P PP T+P TK + + P
Sbjct: 6 DEDEDDFIKAIDIIEAIEAKADMYRLL-PPPSLPTFLPAPPVSEMTTPSTKISSSLSHPM 64
Query: 941 RLHARTCQKRADLFILQP 958
+L + QKR + + P
Sbjct: 65 QLQSSAGQKRDQIQVPDP 82
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 32.5 bits (74), Expect = 1.4
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 879 ESDMDGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNETPPPPTITSTSPPTKTTKTS 938
E+D DGD + +++E + + T S+ P T T+ T T
Sbjct: 693 EAD-DGDNTDRVNVEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTE 751
Query: 939 PP 940
Sbjct: 752 ET 753
>gnl|CDD|206330 pfam14161, FAM110_N, Centrosome-associated N terminus. This is the
N-terminus of a family of proteins that colocalise with
the centrosome/microtubule organisation centre in
interphase and at the spindle poles in mitosis.
Length = 108
Score = 30.3 bits (68), Expect = 1.7
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 904 TKSQPIDPPPIADNETPPPPTITSTSPPTKTTKTSPPRLHARTCQKRADL 953
K +P+ PP + P P SP T K SP + KRA+L
Sbjct: 60 AKQEPVKPPVLRKPLFSPGPKRAGLSP---TRKASPNNAKTESGAKRANL 106
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 31.9 bits (73), Expect = 1.8
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 212 PKDIVILLDASST---LSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYRE 268
P+D IL+ + L++ N R L LG + T D++ +L P R+
Sbjct: 176 PEDYEILVFDTGVKRELASSEYNERRQECEEALKILGKKSSKEV-TEEDLS-KLPPLLRK 233
Query: 269 MLVQATDENKRTLKAALANVKGD 291
EN+R LK A +GD
Sbjct: 234 RAGYVLRENERVLKVRDALKEGD 256
>gnl|CDD|237964 PRK15426, PRK15426, putative diguanylate cyclase YedQ; Provisional.
Length = 570
Score = 31.9 bits (73), Expect = 2.0
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 406 HPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQ 465
+ W + P D + V+ S PV NY GV A+D+P++
Sbjct: 219 RGVRWFTSQP---------DDASNTEPQVTASVPVDAG-NY------WYGVLAMDIPVRS 262
Query: 466 IQK-LVPQYKLGPNGYSFVVNNNGRII 491
+Q+ L +G + +++ R++
Sbjct: 263 LQQFLRNAIDKDLDGEYQLYDSHLRLL 289
>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase. Aspartate kinase
catalyzes a first step in the biosynthesis from Asp of
Lys (and its precursor diaminopimelate), Met, and Thr.
In E. coli, a distinct isozyme is inhibited by each of
the three amino acid products. The Met-sensitive (I) and
Thr-sensitive (II) forms are bifunctional enzymes fused
to homoserine dehydrogenases and form homotetramers,
while the Lys-sensitive form (III) is a monofunctional
homodimer.The Lys-sensitive enzyme of Bacillus subtilis
resembles the E. coli form but is an alpha 2/beta 2
heterotetramer, where the beta subunit is translated
from an in-phase alternative initiator at Met-246. This
may be a feature of a number of closely related forms,
including a paralog from B. subtilis [Amino acid
biosynthesis, Aspartate family].
Length = 441
Score = 31.6 bits (72), Expect = 2.5
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 13/114 (11%)
Query: 209 ATSPKDIVILLDASST-------LSTKHRNLARATINVILDTLGSNDFVNIFTFS----D 257
S + S L+ LA A INV L T S++ FT D
Sbjct: 295 GLSLDRNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDAD 354
Query: 258 VTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYN 311
L+ + ++ E ++ L A ++ G + + G + FE L +
Sbjct: 355 QAKTLLKSELNLSALSSVEVEKGL--AKVSLVGAGMKSAPGVASKIFEALAQNG 406
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 31.3 bits (71), Expect = 2.6
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 906 SQPIDPPPIADNETPPPPTITSTSPPTKTTKTSPPRL 942
+QP P PP ++ PP K K+S P L
Sbjct: 169 AQPAPSAP-----ASSPPPTPASPPPAKAPKSSHPPL 200
>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region.
Length = 57
Score = 28.2 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 906 SQPIDPPPIADNETPPPPTITSTSPPTKTTKTSPP 940
P P ++PPPP S PP K+ PP
Sbjct: 22 KSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPP 56
>gnl|CDD|226533 COG4047, COG4047, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 243
Score = 30.6 bits (69), Expect = 4.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 513 LSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETE-FKVKLHYDEMRRVTSRRHRY-FY 570
L + + EVY D + LL L + +E +T F VK+ R V R Y F
Sbjct: 110 LETLTEENIEVYYEDMSLLLEALARALGADRESKTVVFSVKMFGYAARIVLGRFRPYPFE 169
Query: 571 HPI 573
PI
Sbjct: 170 IPI 172
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 30.4 bits (69), Expect = 4.4
Identities = 9/81 (11%), Positives = 19/81 (23%), Gaps = 8/81 (9%)
Query: 866 DYDQNYDTDQSFPESDMDGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNETPPPPTI 925
+ T+ D D + + + S + P + P
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPP--------SSSPGVPSFPSPPEDPSSPSDS 210
Query: 926 TSTSPPTKTTKTSPPRLHART 946
+ P+ +PP
Sbjct: 211 SLPPAPSSFQSDTPPPSPESP 231
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 30.4 bits (69), Expect = 5.3
Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 22/120 (18%)
Query: 865 SDYDQNYDTDQSFPESDMDGDGDESMDLE---AAMDETMSEVTKSQPIDPPPIADNETPP 921
D ++N + D+ E D G E + M PP P
Sbjct: 158 QDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQSVPAQQAPPNPQQPMPS 217
Query: 922 PPTITSTS--------PPTKTTKTSPPRLHARTCQKRA-----------DLFILQPGRLN 962
+ ++TS + P R+ A T A LF P R
Sbjct: 218 ASSESATSKSASTSRESSPQPQSPPPRRVPAPTVDSTAKEAEQITYQAKRLFQEYPERSK 277
>gnl|CDD|214760 smart00644, Ami_2, Ami_2 domain.
Length = 126
Score = 28.9 bits (65), Expect = 5.6
Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 13/125 (10%)
Query: 553 LHYDEMRRVTSRRH-RYFYHP-IEGTPYSLGLALPDGYGL-YEVLKEEEIKLSAVNATRS 609
+H+ + RY + + Y L G G Y+ + + A A
Sbjct: 8 IHHTANSNASCANEARYMQNNHMNDIGYH---FLVGGDGRVYQGVGWNYVAWHAGGAHTP 64
Query: 610 GL----IRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSVPHNSGP 665
G I E +GS FAE A+D + + + + PD V H
Sbjct: 65 GYNDISIGI-EFIGSFDSDDEPFAEALYAALDLLA--KLLKGAGLPPDGRYRIVGHRDVA 121
Query: 666 RGEKP 670
E P
Sbjct: 122 PTEDP 126
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 30.4 bits (68), Expect = 6.0
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 898 ETMSEVTKSQPIDPPP----IADNETPPPPTITSTSPPTKTTKTSPPRLHARTCQKRADL 953
+T S S+ + IA +T P S P T
Sbjct: 349 KTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQ 408
Query: 954 FILQPGRLNNSGLFNPPFSVQKIP 977
F PG ++ +P S P
Sbjct: 409 FCGDPGLVSPYNPQSPGTSYGPEP 432
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 30.2 bits (68), Expect = 6.0
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 KNMIDIKIN--TVMRILESAEQAA--LSQKSDSSSNVKYLDSRKLLHIPIHEK 101
K ID+ N + RI E+AE+A LS +S + YLD K L I I +
Sbjct: 242 KYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRR 294
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 30.5 bits (69), Expect = 6.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 912 PPIADNETPPPPTITSTSPPTKTTKTSPPRL 942
P+ + TPPP +PP T S P+L
Sbjct: 401 EPVRETATPPPVPPRPVAPPVPHTPESAPKL 431
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 30.0 bits (67), Expect = 6.4
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 884 GDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNE-TPPPPTITSTSPPTKTTKTSP 939
GD E + E+ + T + P P + T PP + T+ P T+P
Sbjct: 178 GDNGEEGEEESVTEAEAEGTTVAGPTTTSPNGGFQPTTPPQEVYGTTDPPFGKVTTP 234
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 30.1 bits (68), Expect = 6.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 912 PPIADNETPPPPTITSTSPPTKTTK 936
PPI + P PP + S + P
Sbjct: 83 PPITEEMRPEPPVLESAAGPHTIIN 107
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 30.1 bits (68), Expect = 7.2
Identities = 14/71 (19%), Positives = 18/71 (25%), Gaps = 2/71 (2%)
Query: 878 PESDMDGDGDESMDLEAAMDETMSEVTKSQPID--PPPIADNETPPPPTITSTSPPTKTT 935
ES S A+ S PPP +PPP S +
Sbjct: 82 NESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPV 141
Query: 936 KTSPPRLHART 946
+ P A
Sbjct: 142 GSPGPPPAASP 152
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 30.2 bits (67), Expect = 8.0
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 8/112 (7%)
Query: 830 KWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDTDQSFPESDMDGDGDES 889
W+ R PQ++S D ++ DA + +P PE D +
Sbjct: 233 NWVWTRELEPQDDSEDDYVIP----DAEIISSPTLEVTAPKEVEQPLQPEP---VDEETV 285
Query: 890 MDLEAAMDETMSEVTKSQPIDPP-PIADNETPPPPTITSTSPPTKTTKTSPP 940
+ +A + ++ +++P P + P T PT T ++ P
Sbjct: 286 AETKAEEEPQPTQTVETKPTSAPESTVEENLPEINQPTQAVQPTSETISTTP 337
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 29.8 bits (67), Expect = 8.8
Identities = 21/101 (20%), Positives = 27/101 (26%), Gaps = 15/101 (14%)
Query: 878 PESDMDGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNETPPPP---TITSTSPPTKT 934
P S DGDE S + P P PPP + +
Sbjct: 14 PRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSNGDRHGGYQP 73
Query: 935 TKTSPPRLHARTCQKRADLFILQPGRLNNSGLFNPPFSVQK 975
P L+A L GL PP+S +
Sbjct: 74 LGQQDPSLYAG----------LGQN--GGGGLPPPPYSPRD 102
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.9 bits (68), Expect = 8.9
Identities = 12/55 (21%), Positives = 15/55 (27%)
Query: 904 TKSQPIDPPPIADNETPPPPTITSTSPPTKTTKTSPPRLHARTCQKRADLFILQP 958
+ S PP PPP PT T P T + + Q
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 29.5 bits (66), Expect = 9.3
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 881 DMDGDGDESMDLEAAMDETM--SEVTKSQPIDPPPIADNETPPPPTITSTSPPTKTTKTS 938
D + + A D S +QP AD PP + STS +
Sbjct: 73 AAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEAS--STSATDEAATDP 130
Query: 939 PPRLHART 946
P AR
Sbjct: 131 PATAAARD 138
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.0 bits (67), Expect = 9.8
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 855 DAMVTEAPVYSDYDQNYDTDQSFPESDMDGDG--------DESMDLEAAMDETMS--EVT 904
D + + D Q+ +D + + M+ DG +ES + DE + EV
Sbjct: 4035 DPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVP 4094
Query: 905 KSQPIDPPPIADNET 919
+ Q ID P D ++
Sbjct: 4095 EDQAIDNHPKMDAKS 4109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.403
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 54,207,867
Number of extensions: 5344146
Number of successful extensions: 5186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5124
Number of HSP's successfully gapped: 55
Length of query: 1061
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 954
Effective length of database: 6,191,724
Effective search space: 5906904696
Effective search space used: 5906904696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)