RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17515
(1061 letters)
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, blood
clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Length = 464
Score = 90.1 bits (223), Expect = 7e-19
Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 16/195 (8%)
Query: 201 SSAWFVEAATSPKDIVILLDAS---STLSTKHRNLARATINVILDTLGSNDFVNIFTFSD 257
++++ A+ S VI++D S TK A+ V +DTL F + ++
Sbjct: 66 AASYGAPASGSENVEVIIIDCSGSMDYPRTK-MMAAKEATKVAIDTLTDGAFFAVVAGTE 124
Query: 258 VTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKY-NRTNQG 316
+ P L++A +++ K A+ + + LA A I +
Sbjct: 125 GARVVYPT-GGQLLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKH- 182
Query: 317 CQCNQAIMLVSSGPPSA--FKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGY 374
+L++ G + ++ + IG+ E++++A + G
Sbjct: 183 ------AILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIADALLGT 236
Query: 375 FEFIKNTDRLRMKVF 389
I++ L + F
Sbjct: 237 VGIIRDPATLA-EDF 250
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; HET: BTB; 1.70A {Methanosarcina
mazei} PDB: 3li8_A* 3lia_A*
Length = 291
Score = 87.0 bits (215), Expect = 9e-19
Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 45/184 (24%)
Query: 429 EGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNG 488
EG MVS +P+F G+A VDVP++ + + + GY+F+V+N G
Sbjct: 146 EGIFMVSYDSPIFKN-------GEFAGIAGVDVPLEYVDDVASSIRTFDTGYAFMVSNTG 198
Query: 489 RIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETE 548
+ HP + + + + + + D+ + G E
Sbjct: 199 IFLSHPT-------------------QKNWIGEKSLSDFDVEEIKNAASDIREGIGGHVE 239
Query: 549 FKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATR 608
K + T + FY P++ +S L +P +EE+ L+ V R
Sbjct: 240 IKDPI--------TGKTVIMFYEPVKTGDFSFVLVVP----------KEEM-LAGVKDLR 280
Query: 609 SGLI 612
L+
Sbjct: 281 DRLL 284
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; 2.99A {Methanosarcina mazei}
Length = 290
Score = 85.9 bits (212), Expect = 2e-18
Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 45/184 (24%)
Query: 429 EGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNG 488
EG MVS +P+ + G+ VDV ++ + ++V + + GY+F+V+N+G
Sbjct: 145 EGVFMVSYVSPIMKEGE-------FAGIGGVDVSLEYVDEVVSKVRTFDTGYAFMVSNSG 197
Query: 489 RIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETE 548
I+ HP + + + + L D+ + G E
Sbjct: 198 VILSHPTHK-------------------DWIGKKDLYDFGGEELEKASRDIKNGIGGHLE 238
Query: 549 FKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATR 608
T + FY P+E ++ L +P +EE+ L+ V R
Sbjct: 239 TADP--------TTGKTVILFYEPVETGDFAFVLVVP----------KEEM-LAGVADLR 279
Query: 609 SGLI 612
L+
Sbjct: 280 ERLL 283
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown
function, uncharacterized protein; 1.50A {Vibrio
cholerae o1 biovar eltor str}
Length = 240
Score = 78.8 bits (194), Expect = 2e-16
Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 45/160 (28%)
Query: 426 DVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVN 485
D G+++VSV+TPV D LG DV + ++ +LV + KL GY F+V+
Sbjct: 112 DSASGEILVSVATPVKDSAT-----GQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVS 166
Query: 486 NNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEG 545
+G I HP +N +SE
Sbjct: 167 EDGTTIAHPK----------KEFNGKPMSEFL--------------------GESKINVD 196
Query: 546 ETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALP 585
+ + + + + +EG + +G+ +
Sbjct: 197 THQVIIN----------GKPYAVSFSDVEGEDWYVGVVID 226
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding,
phosphopr transferase, transmembrane; 2.30A {Shewanella
oneidensis}
Length = 274
Score = 72.0 bits (176), Expect = 8e-14
Identities = 18/154 (11%), Positives = 48/154 (31%), Gaps = 37/154 (24%)
Query: 432 LMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRII 491
LM++ + P + + GV VD+ + ++ + + V+++ GR+I
Sbjct: 145 LMITYAVPFGVQ-------PDYFGVTTVDLALDRLPEQLG----IAPSRLVVLDDQGRLI 193
Query: 492 YHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFKV 551
+H D + ++ + N + + D + G+ F
Sbjct: 194 FHSD------KEKVLAASSSGWLD-----------KQNIKNIAFATLLNDGQAGQASFV- 235
Query: 552 KLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALP 585
+ + + + + +P
Sbjct: 236 --------DDKGTVYLASVAEVAKLKWRVVVMVP 261
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.2 bits (174), Expect = 2e-12
Identities = 84/574 (14%), Positives = 160/574 (27%), Gaps = 227/574 (39%)
Query: 12 LWEFGRHFTNVNEIQRKYQDRDATVVRKDGLVLIRELAAEVKNMIDIKINTVMRILESAE 71
L EF + N+I LAA++ D + ++++
Sbjct: 88 LTEFENCYLEGNDIH--------------------ALAAKLLQENDTTLVKTKELIKN-- 125
Query: 72 QAALSQKSDSSSNVKYLDSRKLLHIPIHEKPTSA---------------------NEMYF 110
Y+ +R + P +K SA + YF
Sbjct: 126 ---------------YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 111 -------QVNRHFDQCAVNTSYSSVLLPEALAKDPDE------QILNAIKWSEHLDPVFL 157
Q + S + L L + + Q LN ++W L
Sbjct: 171 EELRDLYQTYHVLVGDLIKFS-AETLSE--LIRTTLDAEKVFTQGLNILEW--------L 219
Query: 158 NNYETDPSLSWQYFGSTLGFLRRYPAMKWP---------------VDGVPPQDLHDFRSS 202
N P +L P P + G P +L +
Sbjct: 220 ENPSNTPDKD---------YLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 203 AWFVEAATSPKDIV--ILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIF------- 253
A + +V + + + + + ++ +A + L F
Sbjct: 270 -----ATGHSQGLVTAVAIAETDSWESFFVSVRKA-----ITVL--------FFIGVRCY 311
Query: 254 -TFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKY-N 311
+ + ++ +++ + EN + + + ++ E + Y N
Sbjct: 312 EAYPNTSLP------PSILEDSLENNEGVPSPMLSISN-----------LTQEQVQDYVN 354
Query: 312 RTNQGCQCNQAI---------MLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYA 362
+TN + + LV SGPP + L G +
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQS--------------------LYGLNLTLR 394
Query: 363 EMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLYWSSVYPGGKTNTL 422
+ K A S I ++R ++K N L +A P H L
Sbjct: 395 KAK--APSGLDQSR-IPFSER-KLKFSNRFLPVASPF------HSHLLVPASD------L 438
Query: 423 LASDVKEGKLMVSVS---TPVFDKRNYTTRAANLLGVAAVDVP--IQQIQKL------VP 471
+ D+ + + + PV+D T ++L ++ + I +L
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYD----TFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 472 QYK------LGPNGYSFV---VNNN--G---RII 491
Q+K GP G S + + N G R+I
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 46.6 bits (110), Expect = 5e-05
Identities = 83/515 (16%), Positives = 152/515 (29%), Gaps = 157/515 (30%)
Query: 601 LSAVNATRS-----GLIRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSF 655
+ A +TR G + EHV VP + A Q + + F
Sbjct: 1 MDAY-STRPLTLSHGSL---EHVLLVPTASFFIASQLQ-------------------EQF 37
Query: 656 VFSVPHNSG-------PRGEKPLVT-----ASHAVFIEDKGHRAPAMVVGLQ-FQHSALA 702
+P + P LV S V G + + L F++ L
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 703 SHFIN-ITSACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLF----------- 750
+ I+ + + + + Y+ +K + LF
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 751 --F-GQADGTI---MDSLVQDGIYKRVPMYDNQGVCEDSKANDSDS-ARLLKVRVYCEYN 803
F GQ G + L +D +Y+ Y + D +++ + L++ + E
Sbjct: 158 AIFGGQ--GNTDDYFEEL-RD-LYQ---TY--HVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 804 YADDHNFQS--------PEE----------------QVLHFLARSIQPGWKWMSLRPRSP 839
+ N P++ Q+ H++ + G+ LR
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL- 267
Query: 840 QENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDT------------DQSFP--------- 878
Q LV + E + + + +++P
Sbjct: 268 ---KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 879 -ESDMDGDGDES-MDLEAAMDETMSEVTKSQPIDPPPIADNETPPPPTITSTS---PPTK 933
+S + +G S M L + + T +V ++ N P S
Sbjct: 325 EDSLENNEGVPSPM-L-SISNLTQEQVQDY--VN----KTNSHLPAGKQVEISLVNGAKN 376
Query: 934 TTKTSPPR-LHARTCQKRADLFILQPGRLNNSGLFNPPFSVQKI-----------P-HSN 980
+ PP+ L+ R P L+ S + PFS +K+ P HS+
Sbjct: 377 LVVSGPPQSLYGLNLTLRK---AKAPSGLDQSRI---PFSERKLKFSNRFLPVASPFHSH 430
Query: 981 LILLVVDTLCP-CGSKALSIEAQ----PVPD--DG 1008
L++ D + +S A+ PV D DG
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Score = 38.1 bits (88), Expect = 0.017
Identities = 47/244 (19%), Positives = 76/244 (31%), Gaps = 96/244 (39%)
Query: 479 GYS---FVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDL 535
G+S V+NN + H F +R++ NY+
Sbjct: 1658 GFSILDIVINNPVNLTIH--FGGEKGKRIRENYS-------------------------- 1689
Query: 536 RHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEG----TPYS---LGLALPDGY 588
MI + + + K + + E+ ++ F +G T ++ L L
Sbjct: 1690 --AMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSE-KGLLSATQFTQPALTLM---EK 1741
Query: 589 GLYEVLKEE-EIKLSAVNATRSGLIRWKEHVGSVPGSGAEFAEQNRRAM----DAIWFKR 643
+E LK + I A A G H S+ G E+A A+ D + +
Sbjct: 1742 AAFEDLKSKGLIPADATFA---G------H--SL-G---EYA-----ALASLADVMSIES 1781
Query: 644 AVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMV------VGLQFQ 697
V+ VF RG T AV ++ G M+ V F
Sbjct: 1782 LVE--------VVFY-------RGM----TMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 698 HSAL 701
AL
Sbjct: 1823 QEAL 1826
Score = 37.7 bits (87), Expect = 0.028
Identities = 52/260 (20%), Positives = 81/260 (31%), Gaps = 94/260 (36%)
Query: 315 QGCQCNQAIM---LVSSGPPSAFKEVF----KH----YNWP------HMPVRLFSYLIGK 357
QG Q Q M L + A ++V+ H Y + + PV L + G+
Sbjct: 1624 QGSQE-QG-MGMDLYKTSK--AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 358 SS-----NYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHP---LY 409
NY+ M FE I + K+F + + L
Sbjct: 1680 KGKRIRENYSAMI---------FETIVDGKLKTEKIFKEINEHSTSYTF---RSEKGLLS 1727
Query: 410 WSSVYPGGKT-NT----LLAS-----DVKEGKLMVSVSTPVFDKRNYTTRAANL-LG--- 455
T T L D+K L+ + + F A LG
Sbjct: 1728 --------ATQFTQPALTLMEKAAFEDLKSKGLIPADA--TF---------AGHSLGEYA 1768
Query: 456 --VAAVDV-PIQQ-----------IQKLVPQYKLGPNGYSFVVNNNGRII--YHPDFRPL 499
+ DV I+ +Q VP+ +LG + Y + N GR+ + +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 500 YVERLKPNYNNVDLSEVEIV 519
VER+ + VEIV
Sbjct: 1829 VVERVGKRTGWL----VEIV 1844
Score = 32.3 bits (73), Expect = 1.1
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 25/108 (23%)
Query: 725 DDLDCYVLDNNGF----IILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGVC 780
+ D + D GF I+++ T F G+ I ++ Y + +++
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN------YSAM-IFET---I 1696
Query: 781 EDSKANDSDSARLLKVRVYCEYNY-ADDHNFQSPEEQVLHFLARSIQP 827
D +L +++ E N + + F+S + +L + QP
Sbjct: 1697 VD--------GKLKTEKIFKEINEHSTSYTFRSEKG-LL-SATQFTQP 1734
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 5e-10
Identities = 98/665 (14%), Positives = 192/665 (28%), Gaps = 184/665 (27%)
Query: 20 TNVNEIQRKYQD----------RDATVVRKDGLVLIREL--AAEVKNMIDIK--INTVMR 65
E Q +Y+D + KD + + + E+ ++I K ++ +R
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 66 ---ILESAEQAALSQKSDSSSNVKYLDSRKLLHIPIHEK---PTSANEMY-FQVNRHFDQ 118
L S ++ + + + + Y K L PI + P+ MY Q +R ++
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINY----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 119 CAVNTSYS-----SVL-LPEALAKDPDEQILNAI-------KWSEHLDPVFLNNYETDPS 165
V Y+ L L +AL + + + I K + +Y+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTW--VALDVCLSYKVQCK 179
Query: 166 LSWQYFGSTLGFLRRYPAMKWPVDGVPP-QDLHDFRSSAWFVEAATSPKDIVILLDASST 224
+ ++ F L P + Q L W + S + + +
Sbjct: 180 MDFKIFWLNLKNCNS------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 225 LST--KHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLK 282
L K + + +L + + N F S C ++L+ T K+
Sbjct: 234 LRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLS--------C--KILL--TTRFKQVTD 279
Query: 283 AALANVKG-----DNVANFTGALATAFEILHKYNRTN------QGCQCN-QAIMLVSSGP 330
A + T +L KY + N + + ++
Sbjct: 280 FLSAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---- 333
Query: 331 PSAFKEVFKHY-NWPHMPVRLFSYLIGKSSNY---AEMKQMACSNKGYFEFIKNTDRLRM 386
+ ++ + NW H+ + +I S N AE ++M +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM------FDRLS-------- 379
Query: 387 KVFNY-VLVMARPLIMYQTEHPLYWSSVYPGG--------KTNTLLASDVKEGKLMVSVS 437
VF + L L W V +L+ KE +S+
Sbjct: 380 -VFPPSAHIPTILL-------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIP 429
Query: 438 TPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYK---------LGPN---GYSFVVN 485
+ + + L A+ + +V Y L P Y +
Sbjct: 430 SIYLELK------VKLENEYALH------RSIVDHYNIPKTFDSDDLIPPYLDQYFY--- 474
Query: 486 NNGRIIYH----------PDFRPLYVERLKPNYNNVDLS--EVEIVDSEV---YPRDNNS 530
I +H FR ++ +D E +I +
Sbjct: 475 --SHIGHHLKNIEHPERMTLFRMVF----------LDFRFLEQKIRHDSTAWNASGSILN 522
Query: 531 LLLDLRH--DMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLAL-PDG 587
L L+ I + + E V D + ++ Y + L +AL +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL------LRIALMAED 576
Query: 588 YGLYE 592
++E
Sbjct: 577 EAIFE 581
Score = 61.0 bits (147), Expect = 2e-09
Identities = 100/692 (14%), Positives = 201/692 (29%), Gaps = 216/692 (31%)
Query: 265 CYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIM 324
Y+++L D + K +V + ++ + EI H + +
Sbjct: 17 QYKDILSVFEDAFVDNF-----DCK--DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 325 LVSSGPPSAFKEVF-----KHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIK 379
+ S ++ +Y + P++ E +Q + + Y E
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIK------------TEQRQPSMMTRMYIEQ-- 115
Query: 380 NTDRLRMKVFNYVLVMA-----RPLIMYQTEHPLY------WSSVY--PG-GKTNTLLAS 425
R +++N V A R + L + G GKT +
Sbjct: 116 -----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALD 169
Query: 426 DVKEGKLMVSVSTPVF--DKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFV 483
K+ + +F + +N + + ++ +QKL Y++ PN S
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNS----------PETVLEMLQKL--LYQIDPNWTS-- 215
Query: 484 VNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLL-LDLRHDMIDQ 542
R + +K +++ ++ S+ Y N LL L ++ +
Sbjct: 216 -------------RSDHSSNIKLRIHSIQAELRRLLKSKPYE---NCLLVLL---NVQNA 256
Query: 543 KEGETEFKVK---LHYDEMRRVTSR-------------RHRYFYHPIEG--TPYSLGL-- 582
K F + L +T+R H H L
Sbjct: 257 KAWNA-FNLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 583 --------ALPDGYGLYEVLKEEEIKLSAVNA-TRSGLIRWKEHVGSVPGSGAEFAEQNR 633
LP EVL +LS + R GL W + N
Sbjct: 309 KYLDCRPQDLPR-----EVLTTNPRRLSIIAESIRDGLATWDN-----------WKHVNC 352
Query: 634 RAMDAIWFKRAVDQHNIEPDSF--------VFSVPHNSGPRGEK-PLVTASHAVFIEDKG 684
+ I + +++ +EP + VF P P + S + D
Sbjct: 353 DKLTTI-IESSLN--VLEPAEYRKMFDRLSVF-------PPSAHIPTILLS--LIWFDVI 400
Query: 685 HRAPAMVVGLQFQHSALASHFINITSACTAGPGC----KKTCASDD------LDCYVLDN 734
+VV ++S + T + P K ++ +D Y +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYALHRSIVDHYNI-- 455
Query: 735 NGFIILSEKYEQTGLFFGQADGTI-------MDSLVQDGIYKRVPM-YDN-----QGVCE 781
+ ++ L D + ++ M + + Q +
Sbjct: 456 ------PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 782 DSKANDSDSAR---LLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGWKWMSLRPRS 838
DS A ++ + L +++ Y Y +D ++ +L FL
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL---------------PK 554
Query: 839 PQEN---SSDKSLVQSLVFDAMVTE-APVYSD 866
+EN S L++ A++ E ++ +
Sbjct: 555 IEENLICSKYTDLLRI----ALMAEDEAIFEE 582
Score = 46.8 bits (110), Expect = 4e-05
Identities = 53/379 (13%), Positives = 110/379 (29%), Gaps = 124/379 (32%)
Query: 725 DDLDCY-VLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGVCEDS 783
D+ DC V D I+ E+ D I S
Sbjct: 31 DNFDCKDVQDMPKSILSKEEI--------------------DHIIM-------------S 57
Query: 784 KANDSDSARLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGWKWM--SLRPRSPQE 841
K S + RL + EE V F+ ++ +K++ ++ Q
Sbjct: 58 KDAVSGTLRLFWTLL------------SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 842 NSSDKSLVQSLVFDAMVTEAPVYSDYD----QNYDTDQSF-----PESD-----MDGDGD 887
+ + ++ D + + V++ Y+ Q Y + P + + G G
Sbjct: 106 SMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 888 ESMDLEAAMDE-------------TMSEVTKSQP-----------IDPPPIADNETPPPP 923
+ L+ + + + IDP + ++
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 924 TITSTSPPTKTTKTSPPRLHARTCQKRADLFILQPGRLNNSGLFNPPFSVQ-KIPHSNLI 982
+ + + RL + L +L + N+ +N F++ KI L+
Sbjct: 224 KL-----RIHSIQAELRRLLKSKPYENC-LLVLL--NVQNAKAWN-AFNLSCKI----LL 270
Query: 983 L----LVVDTLCPCGSKALSIEAQPVPDDGCKLSETHHMYRRKPNKCVNYHPEEI--EIK 1036
V D L + +S++ E + K ++ P+++ E+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDH---HSMTLTPDEVKSLLL----KYLDCRPQDLPREVL 323
Query: 1037 QCGSGSRFHLSFPLLLAIL 1055
P L+I+
Sbjct: 324 TTN---------PRRLSII 333
Score = 44.1 bits (103), Expect = 3e-04
Identities = 59/424 (13%), Positives = 110/424 (25%), Gaps = 143/424 (33%)
Query: 519 VDSEVYPRD--NNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRV-TSRRHRYFY---HP 572
+D E +L +D F K D + + + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVD------NFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 573 IEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATRSGLI-RWKEHVGSVPGSGAEFAEQ 631
+ GT L + + EE + L+ K EQ
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSPIKT-------------EQ 102
Query: 632 NRRAMDAIWFKRAVDQ-HNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAM 690
+ +M + D+ +N D+ VF+ +N R + +E + PA
Sbjct: 103 RQPSMMTRMYIEQRDRLYN---DNQVFA-KYNV-SRLQP--YLKLRQALLELR----PAK 151
Query: 691 VVGLQFQHSALASHFINITSACTAG-PGCKKTC-ASDDL-DCYVLDNNGFIILSEKYEQT 747
V + G G KT A D V F
Sbjct: 152 NVLID-------------------GVLGSGKTWVALDVCLSYKVQCKMDF---------- 182
Query: 748 GLF---FGQ--ADGTIMDSLVQDGIYKRVPMYDNQG--------VCEDSKANDSDSARLL 794
+F + T+++ L Q +Y+ P + ++ +A RLL
Sbjct: 183 KIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLL 238
Query: 795 KVRVY----------CEYNYADDHNFQSP------------------------------- 813
K + Y + N
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 814 -EEQVLHFLARSIQPGWKWMSLRPRS-PQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNY 871
++V L K++ RP+ P+E + S+ + + D ++
Sbjct: 299 TPDEVKSLLL-------KYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHV 350
Query: 872 DTDQ 875
+ D+
Sbjct: 351 NCDK 354
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural
genomics, midwest CEN structural genomics (MCSG),
PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis}
PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Length = 217
Score = 56.2 bits (135), Expect = 7e-09
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 408 LYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQ 467
S Y T G+ + ++ PV D + N+ + I ++
Sbjct: 110 TVISDSYSSRIT----------GQPIFTICVPVLDSKR------NVTDYLVAAIQIDYLK 153
Query: 468 KLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVER 503
L+ L P+ Y VVN +G++I+ ++
Sbjct: 154 NLINL--LSPDVYIEVVNQDGKMIFASGQASHAEDQ 187
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A
domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Length = 223
Score = 44.1 bits (104), Expect = 8e-05
Identities = 26/207 (12%), Positives = 71/207 (34%), Gaps = 32/207 (15%)
Query: 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDF---VNIFTFSDVTVELVPCY 266
+ +I ++LD S ++ + A+ ++ +++ + S + T++ V
Sbjct: 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-- 70
Query: 267 REMLVQATDENKRTLKAALANVKGDNVANFTG-----ALATAFEILHKYNRTNQGCQCN- 320
+ +A N + L + ++ +G AL + ++ +
Sbjct: 71 ---VSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRT 127
Query: 321 -QAIMLV------SSGPPSAFKEVFKHYNWPHMP--------VRLFSYLIGKSSNYAEMK 365
I+L+ G P + + + + ++ + +G N +
Sbjct: 128 RHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNIN 187
Query: 366 QMACS--NKGYFEFIKNTDRLRMKVFN 390
+A N+ + +K+ + L VF
Sbjct: 188 ALASKKDNEQHVFKVKDMENLE-DVFY 213
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 42.4 bits (100), Expect = 2e-04
Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 22/182 (12%)
Query: 211 SPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREML 270
D+ +LD S +++ + + + ++ FS ++P
Sbjct: 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT---- 60
Query: 271 VQATDENKRTLKAALANVKGDNVANFT---GALATAFEILHKYNRTNQGCQCNQAIMLVS 327
++ + L ++K + T L A E + K + I+ ++
Sbjct: 61 -----GDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKT----SSIIIALT 111
Query: 328 SGPPSAFKEVFKHYNWPHMPVRLFS---YLIG-KSSNYAEMKQMACSNKGYFEFIKNTDR 383
G V + R Y +G A+++++A S + F
Sbjct: 112 DGKLDG--LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQA 169
Query: 384 LR 385
L+
Sbjct: 170 LK 171
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold,
signaling protein; HET: CIT; 2.70A {Rhodopseudomonas
palustris}
Length = 254
Score = 39.5 bits (92), Expect = 0.003
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 430 GKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGR 489
G + VS + GV + + + LGP G +++++GR
Sbjct: 124 GVWVFVVSRRLETTDG------KFFGVVVATIESEYFSTFYKTFDLGPGGSISLLHSDGR 177
Query: 490 IIYHPDFRP 498
++
Sbjct: 178 LLIQWPSLQ 186
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling
protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A
2p7j_A*
Length = 295
Score = 38.7 bits (89), Expect = 0.007
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 427 VKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNN 486
V + + P+ G ++V I+ + L+ Y + + +V +
Sbjct: 145 VYPLSPSLRILMPISVN-------DVRQGYLVLNVDIEYLSSLL-NYSPVRDFHIELVKH 196
Query: 487 NGRIIYHPDFRPLYVERLKPN 507
G I PD LY + +
Sbjct: 197 KGFYIASPDESRLYGDIIPER 217
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 35.7 bits (82), Expect = 0.091
Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 15/126 (11%)
Query: 214 DIVILLDASSTLSTKHRNLARATINVILDTLGSNDF---VNIFTFSDVTVELVPCYREML 270
+I ++LD S ++ + A+ + +++ + S + T++ V +
Sbjct: 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-----V 57
Query: 271 VQATDENKRTLKAALANVKGDNVANFTG-----ALATAFE--ILHKYNRTNQGCQCNQAI 323
+A N + L + ++ +G AL + + I
Sbjct: 58 SEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVI 117
Query: 324 MLVSSG 329
+L++ G
Sbjct: 118 ILMTDG 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.20
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 16/35 (45%)
Query: 464 QQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRP 498
Q ++KL KL Y D P
Sbjct: 20 QALKKLQASLKL----------------YADDSAP 38
Score = 31.1 bits (69), Expect = 0.88
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 972 SVQKIPHSNLILLVVDTLCPCGSKALSIEAQ 1002
+++K+ ++L L D+ P AL+I+A
Sbjct: 21 ALKKL-QASLKLYADDS-AP----ALAIKAT 45
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 32.1 bits (72), Expect = 0.22
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 904 TKSQPIDPPPIADNETPPPPTITSTSPPTKTTKTSPP 940
T + P PP A +P PP + PP + P
Sbjct: 61 TPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPV 97
Score = 29.4 bits (65), Expect = 2.1
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 911 PPPIADNETPPPPTITSTSPPTKTTKTSPPRLH 943
P P AD +PPPP SPP PP H
Sbjct: 77 PSPPADGGSPPPPA-DGGSPPVDGGSPPPPSTH 108
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens}
Length = 185
Score = 30.5 bits (69), Expect = 1.9
Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 20/183 (10%)
Query: 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREM 269
D+ +LD S ++ + + + ++ FS L+
Sbjct: 5 YGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKL---- 60
Query: 270 LVQATDENKRTLKAALANVKGDNVANFT---GALATAFEILHKYNRTNQGCQCNQAIMLV 326
E++ ++ L ++ T A E ++ NR I+ +
Sbjct: 61 -----TEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTA--SVIIAL 113
Query: 327 SSGPPSAFKEVFKHYNWPHMPVRLFS---YLIG-KSSNYAEMKQMACSNKGYFEFIKNTD 382
+ G +++F + R Y +G K N ++ ++A S F
Sbjct: 114 TDG--ELHEDLFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIADSKDHVFPVNDGFQ 171
Query: 383 RLR 385
L+
Sbjct: 172 ALQ 174
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 30.4 bits (67), Expect = 2.4
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 906 SQPIDPPPIADNETPPPPTITSTSPPTKTTKTSPPR 941
+ +PP +D+E +T PP +PPR
Sbjct: 152 TSTWEPPVSSDDEASSQSKPLATQPPVLALSNAPPR 187
>4exo_A Methyl-accepting chemotaxis protein; signaling protein, chemotaxis
receptor, PAS domain, four HEL bundle; HET: MSE; 1.90A
{Vibrio parahaemolyticus}
Length = 146
Score = 29.2 bits (66), Expect = 3.5
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 444 RNYTTRAANLLGVAAVDVP----IQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPL 499
+ Y + Q ++++ + +GY F ++ G H
Sbjct: 19 KAYMMMGVTAIKPLYDSDVNGSNKQAAKEILKAMRFESDGYFFAYDSQGINTLHA----- 73
Query: 500 YVERLKPNYNNVDLSEVE 517
+KP+ +L +++
Sbjct: 74 ----IKPSLEGKNLYDLK 87
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 29.7 bits (67), Expect = 3.9
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDF-VNIFTFSDVTVELVPCYRE 268
+DIV L+D S ++S+++ + ++ ++ FS+
Sbjct: 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFT---- 62
Query: 269 MLVQATDENKRTLKAALANVKGDNVANFTG-ALATAFEIL 307
+ + LA+V +T A+ L
Sbjct: 63 -FEEFR--RSSNPLSLLASVHQLQGFTYTATAIQNVVHRL 99
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal
transduction, multi-domai protein, transferase; 2.60A
{Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3
PDB: 2ch4_A* 3ur1_A
Length = 379
Score = 30.2 bits (69), Expect = 3.9
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 1033 IEIK-QCGSGSRFHLSFPLLLAIL 1055
+ I+ + G++ + PL LAI+
Sbjct: 229 MGIESEKDKGTKVTIRLPLTLAII 252
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 29.6 bits (67), Expect = 3.9
Identities = 32/168 (19%), Positives = 65/168 (38%), Gaps = 20/168 (11%)
Query: 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLG-SNDF--VNIFTFSDVTVELVPCY 266
+ D+V LLD SS LS + +A + +++ L S + V + + D
Sbjct: 11 SRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDG-------S 63
Query: 267 REMLVQATDENKRTLKAALANVK--GDNVANFTGAL-ATAFEILHKYNRTNQGCQCNQAI 323
+ + L+ + VK G VA+ + L T F+I K +R ++
Sbjct: 64 HAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEA----SRIA 119
Query: 324 MLVSSG--PPSAFKEVFKHYNWPHMP-VRLFSYLIGKSSNYAEMKQMA 368
+L+ + P + ++ V + IG +N +++ +
Sbjct: 120 LLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIE 167
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2,
MCSG, protein structur initiative; 1.91A {Vibrio
parahaemolyticus}
Length = 174
Score = 29.3 bits (66), Expect = 4.1
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 464 QQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVE 517
Q ++++ + +GY F ++ G H +KP+ +L +++
Sbjct: 50 QAAKEILKAMRFESDGYFFAYDSQGINTLHA---------IKPSLEGKNLYDLK 94
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 29.9 bits (67), Expect = 4.9
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 879 ESDMDGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADN-ETPPPPTITSTSPPTKTTK 936
D D +G L A E + K++ ID P + + P P +
Sbjct: 519 SGDQD-NGI----LTNAAHEGLKRRIKNKVIDMTPFYLDSDEELPTYTEPAEPQCEACN 572
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 28.7 bits (63), Expect = 8.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 902 EVTKSQPIDPPPIADNETPPPPTITSTSPPTKTTKTSP 939
V + I+ PIA PT +++ PT T +P
Sbjct: 165 FVIQPGEINSAPIATATPTTKPTAFASTMPTVTLTPTP 202
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 29.2 bits (65), Expect = 8.4
Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 214 DIVILLDASSTLSTKHRNLARATINVILDTLGSNDF---VNIFTFSDVTVELVPCYREML 270
++ +LLDAS ++S + + + ++++D + S + V I TF+ L+ +
Sbjct: 11 NLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMS-----V 65
Query: 271 VQATDENKRTLKAALANVKGDNVANFTG 298
+ + + ++L N + N TG
Sbjct: 66 LNDNSRDMTEVISSLENANYKDHENGTG 93
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 29.0 bits (65), Expect = 9.9
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 489 RIIYHPDFRPLYVERLKPNYNN 510
+ HP ++ L V + N++N
Sbjct: 152 HVFIHPGWKLLAVPEGRTNFDN 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.403
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,394,379
Number of extensions: 1007251
Number of successful extensions: 2408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2362
Number of HSP's successfully gapped: 42
Length of query: 1061
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 958
Effective length of database: 3,825,930
Effective search space: 3665240940
Effective search space used: 3665240940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)