RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17515
(1061 letters)
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 50.7 bits (120), Expect = 1e-07
Identities = 20/178 (11%), Positives = 49/178 (27%), Gaps = 8/178 (4%)
Query: 208 AATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYR 267
+ D+ +LD S +++ + + + ++ FS ++P
Sbjct: 1 SCRRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTG 60
Query: 268 EMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVS 327
+ L V L A E + K
Sbjct: 61 DR------GKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKL 114
Query: 328 SGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLR 385
G ++ E + + ++ + A+++++A S + F L+
Sbjct: 115 DGLVPSYAEK-EAKISRSLGASVYCVGVL-DFEQAQLERIADSKEQVFPVKGGFQALK 170
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 49.5 bits (117), Expect = 3e-07
Identities = 22/177 (12%), Positives = 59/177 (33%), Gaps = 12/177 (6%)
Query: 212 PKDIVILLDASSTLSTKHRNLARATINVILDTL---GSNDFVNIFTFSDVTVELVPCYRE 268
P D+++LLD SS+ + + ++ + V++ + +T VP
Sbjct: 2 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVV 61
Query: 269 MLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSS 328
K L + + ++ + + G ++A++++ +
Sbjct: 62 P-------EKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVT 114
Query: 329 GPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMA-CSNKGYFEFIKNTDRL 384
+ V +F IG + A+++ +A + ++ + L
Sbjct: 115 DVSVDSVDAA-ADAARSNRVTVFPIGIGDRYDAAQLRILAGPAGDSNVVKLQRIEDL 170
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 209
Score = 45.4 bits (106), Expect = 1e-05
Identities = 26/203 (12%), Positives = 69/203 (33%), Gaps = 32/203 (15%)
Query: 214 DIVILLDASSTLSTKHRNLARATINVILDTLGS---NDFVNIFTFSDVTVELVPCYREML 270
+I ++LD S ++ + A+ ++ +++ + S + T++ V
Sbjct: 3 NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS---- 58
Query: 271 VQATDENKRTLKAALANVKGDNVANFTG-----ALATAFEIL--HKYNRTNQGCQCNQAI 323
+A N + L + ++ +G AL + ++ + I
Sbjct: 59 -EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVI 117
Query: 324 MLVS------SGPPSAFKEVFKHYNWPHMPVRL--------FSYLIGKSSNYAEMKQMAC 369
+L++ G P + + + + + + +G N + +A
Sbjct: 118 ILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177
Query: 370 S--NKGYFEFIKNTDRLRMKVFN 390
N+ + +K+ + L VF
Sbjct: 178 KKDNEQHVFKVKDMENLE-DVFY 199
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 202
Score = 43.7 bits (102), Expect = 4e-05
Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 23/199 (11%)
Query: 192 PPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVN 251
PP LHDF S D+V LLD SS LS + +A + +++ L +
Sbjct: 3 PP--LHDFYCSR--------LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQ--- 49
Query: 252 IFTFSDVTVELVPCYREMLVQA---TDENKRTLKAALANVKGDNVANFTGALATAFEILH 308
V V +V + + L+ + VK + + + +
Sbjct: 50 ----KWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQ 105
Query: 309 KYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHY--NWPHMPVRLFSYLIGKSSNYAEMKQ 366
+++ ++ A++L++S P F Y V + IG +N +++
Sbjct: 106 IFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRL 165
Query: 367 MA-CSNKGYFEFIKNTDRL 384
+ + + + + D L
Sbjct: 166 IEKQAPENKAFVLSSVDEL 184
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1
alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 39.2 bits (90), Expect = 0.001
Identities = 17/183 (9%), Positives = 54/183 (29%), Gaps = 13/183 (7%)
Query: 210 TSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREM 269
DI L+D S ++ + ++ +++ L + + ++ +R
Sbjct: 3 QEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSL------MQYSEEFRIH 56
Query: 270 LVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSG 329
+N ++ + + T + +++++ G
Sbjct: 57 FTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDG 116
Query: 330 PPSAFKEVFKHYNWPHMPVRLFSYLIGKSS------NYAEMKQMA-CSNKGYFEFIKNTD 382
++ + Y+IG + E+ +A + + + N +
Sbjct: 117 EKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFE 176
Query: 383 RLR 385
L+
Sbjct: 177 ALK 179
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
associated antigen-1, LFA-1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 36.4 bits (83), Expect = 0.007
Identities = 19/178 (10%), Positives = 55/178 (30%), Gaps = 16/178 (8%)
Query: 212 PKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDF-VNIFTFSDVTVELVPCYREML 270
D+V L D S +L + ++ + + FS +
Sbjct: 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYV- 60
Query: 271 VQATDENKRTLKAALANVKGDNVANFTG-ALATAFEILHKYNRTNQGCQCN--QAIMLVS 327
++ A L +VK + T A+ + R G + + + +++++
Sbjct: 61 ------KRKDPDALLKHVKHMLLLTNTFGAINYV---ATEVFREELGARPDATKVLIIIT 111
Query: 328 SGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMA-CSNKGYFEFIKNTDRL 384
G + + + + + + + + + A + + + ++L
Sbjct: 112 DGEATDSGNIDAAKDIIRYIIGIGKH-FQTKESQETLHKFASKPASEFVKILDTFEKL 168
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 189
Score = 35.4 bits (80), Expect = 0.020
Identities = 23/183 (12%), Positives = 63/183 (34%), Gaps = 17/183 (9%)
Query: 212 PKDIVILLDASSTLSTKHRNLARATINVILDTLG-SNDFVNIFTFSDVTVELVPCYREML 270
+DIV L+D S ++S+++ + ++ + ++ FS ++
Sbjct: 2 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFS-------NKFQTHF 54
Query: 271 VQATDENKRTLKAALANVKGDNVANFTG-ALATAFEILHKYNRTNQGCQCNQAIML---V 326
+ LA+V +T A+ L + + I++
Sbjct: 55 TFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGK 114
Query: 327 SSGPPSAFKEV---FKHYNWPHMPVRLFSYLIGKSSNYAEMKQMA-CSNKGYFEFIKNTD 382
G +K+V + + + +++ E+ +A ++ + +++ D
Sbjct: 115 KEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNR-NSWKELNDIASKPSQEHIFKVEDFD 173
Query: 383 RLR 385
L+
Sbjct: 174 ALK 176
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 31.8 bits (71), Expect = 0.32
Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 28/189 (14%)
Query: 214 DIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFS--DVTVELVPCYREMLV 271
DIVI+LD S+ S + A + ND + V +V +
Sbjct: 3 DIVIVLDGSN--SIYPWDSVTAFL---------NDLLKRMDIGPKQTQVGIVQYGENVTH 51
Query: 272 QA---TDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQG-CQCNQAIMLVS 327
+ + + A + AL T + + +++V+
Sbjct: 52 EFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVT 111
Query: 328 SGPPSAFKEVFKHYNWPHMP-VRLFSYLIGKSSNYA---------EMKQMA-CSNKGYFE 376
G + K ++ FS I S N E+K +A + +F
Sbjct: 112 DGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFF 171
Query: 377 FIKNTDRLR 385
+ + L
Sbjct: 172 NVSDELALV 180
>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans
[TaxId: 266]}
Length = 147
Score = 28.3 bits (62), Expect = 3.2
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 569 FYHPIEGTPYSLGLALPDG 587
F++ I+G+P + A+ +G
Sbjct: 4 FFNIIDGSPLNFDDAMEEG 22
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide
isomerase/thioredoxin TTHA0593 {Thermus thermophilus
[TaxId: 274]}
Length = 187
Score = 28.3 bits (62), Expect = 3.2
Identities = 19/159 (11%), Positives = 38/159 (23%), Gaps = 10/159 (6%)
Query: 764 QDGIYKRVPMYDNQGVCEDSKANDSD-SARLLKVRVYCEYNYADDHNFQSPEEQVLHFLA 822
G R+ + + N + V Y F
Sbjct: 20 PRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYP 79
Query: 823 RSIQPGWKWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDTDQSFPESDM 882
+ D++ + + A+ T D + ++
Sbjct: 80 EDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPK 139
Query: 883 DGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNETPP 921
D +S DLEAA++ + + + E P
Sbjct: 140 DPSKVQSHDLEAAIE----ALLRGEEPPL-----KEAPA 169
>d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 190
Score = 27.7 bits (61), Expect = 5.0
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 742 EKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGVCEDSKANDSDSARLLKVRVYCE 801
G+ F ++G + D I++ + +C D D L K + E
Sbjct: 121 GPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPD---LKVDLGVLGKQQFDLE 177
Query: 802 YNYADDH 808
+
Sbjct: 178 NKFKPFT 184
>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase
{Lingulodinium polyedrum [TaxId: 160621]}
Length = 351
Score = 27.6 bits (61), Expect = 8.5
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 66 ILESAEQAALSQKSDSSSNVKYLDSRKLLHIPIHEKPTSANEMYFQVNRHFDQCAVNTS 124
I S QAA +++ S + ++ K++ H + MY ++N+ D C V+ S
Sbjct: 164 ITVSGGQAAFIKEAIKSGMLGAAEANKIVADTDHHQ---TGGMYLRINQFGDVCTVDAS 219
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 26.8 bits (59), Expect = 9.8
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 214 DIVILLDASS---TLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYR 267
D+ +L L + + +A ++ + +V+ V V++VPCY+
Sbjct: 61 DVFLLFPEEFSKEELRERGLEIGKAVLDSYEIRYAEHPYVH-GVVKGVEVDVVPCYK 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.403
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,996,530
Number of extensions: 191599
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 17
Length of query: 1061
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 966
Effective length of database: 1,103,246
Effective search space: 1065735636
Effective search space used: 1065735636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)