BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17516
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50533|SMC2_XENLA Structural maintenance of chromosomes protein 2 OS=Xenopus laevis
GN=smc2 PE=1 SV=1
Length = 1203
Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/175 (70%), Positives = 145/175 (82%)
Query: 90 MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAG 149
M +K IVE+D++K+L IEELD+KK AL AW KVN DFGSIFS LLPG+ A L+PP G
Sbjct: 1003 MKRKRIVENDKSKILTTIEELDQKKNEALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEG 1062
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
+ +LDGLE VA G WKE+L ELSGGQRSLVALSL+LAMLLFKPAP+YILDEVDAALDL
Sbjct: 1063 QSVLDGLEFKVALGNTWKENLTELSGGQRSLVALSLILAMLLFKPAPIYILDEVDAALDL 1122
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTVNRKN 264
SHTQNIGQML+ HF+ SQFI+VSLK+GMF+NANV+F+TKFVDG S V R +N
Sbjct: 1123 SHTQNIGQMLRTHFRHSQFIVVSLKDGMFNNANVLFKTKFVDGVSTVARFAQNQN 1177
>sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens
GN=SMC2 PE=1 SV=2
Length = 1197
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 124/175 (70%), Positives = 144/175 (82%)
Query: 90 MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAG 149
M KK IVE+D++K+L IE+LD+KK AL AW KVN DFGSIFS LLPG+ A L+PP G
Sbjct: 1002 MKKKRIVENDKSKILTTIEDLDQKKNQALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEG 1061
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
+ +LDGLE VA G WKE+L ELSGGQRSLVALSL+L+MLLFKPAP+YILDEVDAALDL
Sbjct: 1062 QTVLDGLEFKVALGNTWKENLTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDL 1121
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTVNRKN 264
SHTQNIGQML+ HF SQFI+VSLKEGMF+NANV+F+TKFVDG S V R +N
Sbjct: 1122 SHTQNIGQMLRTHFTHSQFIVVSLKEGMFNNANVLFKTKFVDGVSTVARFTQCQN 1176
>sp|Q8CG48|SMC2_MOUSE Structural maintenance of chromosomes protein 2 OS=Mus musculus
GN=Smc2 PE=1 SV=2
Length = 1191
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/169 (72%), Positives = 142/169 (84%)
Query: 90 MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAG 149
M KK IVE+D++K+L IE+LD+KK AL AW KVN DFGSIFS LLPG+ A L+PP G
Sbjct: 1002 MKKKRIVENDKSKILATIEDLDQKKNQALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEG 1061
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
+ +LDGLE VA G WKE+L ELSGGQRSLVALSL+L+MLLFKPAP+YILDEVDAALDL
Sbjct: 1062 QTVLDGLEFKVALGNTWKENLTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDL 1121
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTR 258
SHTQNIGQML+ HF SQFI+VSLKEGMF+NANV+F+TKFVDG S V R
Sbjct: 1122 SHTQNIGQMLRTHFTHSQFIVVSLKEGMFNNANVLFKTKFVDGVSTVAR 1170
>sp|Q9SN90|SMC22_ARATH Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis
thaliana GN=SMC2-2 PE=2 SV=1
Length = 1171
Score = 252 bits (643), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/175 (73%), Positives = 152/175 (86%)
Query: 90 MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAG 149
MTKK+I+E+D++K+ KVIEELDEKKK L+ W+KVN DFGSIFS LLPG+ +KL PP G
Sbjct: 997 MTKKNIIETDKSKIKKVIEELDEKKKETLKVTWVKVNQDFGSIFSTLLPGTMSKLEPPEG 1056
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
LDGLEV VAFG +WK+SL ELSGGQRSL+ALSL+LA+LLFKPAP+YILDEVDAALDL
Sbjct: 1057 GTFLDGLEVRVAFGDVWKQSLSELSGGQRSLLALSLILALLLFKPAPIYILDEVDAALDL 1116
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTVNRKN 264
SHTQNIG+M+K HF SQFI+VSLKEGMFSNA+V+FRTKFVDG S V RTV +++
Sbjct: 1117 SHTQNIGRMIKSHFPHSQFIVVSLKEGMFSNADVLFRTKFVDGVSTVQRTVTKQS 1171
>sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis
thaliana GN=SMC2-1 PE=2 SV=2
Length = 1175
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/174 (71%), Positives = 150/174 (86%)
Query: 90 MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAG 149
++KK+ +E+D++K+ KVIEELDEKKK L+ W+KVN DFGSIFS LLPG+ AKL PP
Sbjct: 1000 ISKKNTIENDKSKITKVIEELDEKKKETLKVTWVKVNQDFGSIFSTLLPGTMAKLEPPED 1059
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
+ LDGLEV VAFG +WK+SL ELSGGQRSL+ALSL+LA+LLFKPAPLYILDEVDAALDL
Sbjct: 1060 GNFLDGLEVRVAFGKVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDL 1119
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTVNRK 263
SHTQNIG+M++ HF SQFI+VSLKEGMF+NANV+FRTKFVDG S V RTV ++
Sbjct: 1120 SHTQNIGRMIRAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVTKQ 1173
>sp|Q54PK4|SMC2_DICDI Structural maintenance of chromosomes protein 2 OS=Dictyostelium
discoideum GN=smc2 PE=3 SV=1
Length = 1184
Score = 241 bits (615), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/174 (70%), Positives = 146/174 (83%)
Query: 87 MEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSP 146
E M KK I+E+D++K+ VI ELDEKK +LR W KVN DFGSIFS LLPG+ AKL P
Sbjct: 999 QELMEKKKIIENDKSKIEHVIRELDEKKNESLRTTWKKVNKDFGSIFSTLLPGTSAKLEP 1058
Query: 147 PAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206
P G++ L GLEV VAFG +WKE+L ELSGGQ+SL+ALSL+L++LLFKPAP+YILDE+DAA
Sbjct: 1059 PEGQNELFGLEVKVAFGDVWKETLSELSGGQKSLLALSLILSLLLFKPAPMYILDEIDAA 1118
Query: 207 LDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTV 260
LDLSHTQNIG MLK+HF +SQFI+VSLKEGMF+NANV+F TKF+DG S V RTV
Sbjct: 1119 LDLSHTQNIGMMLKQHFTSSQFIVVSLKEGMFTNANVLFETKFIDGVSKVHRTV 1172
>sp|Q90988|SMC2_CHICK Structural maintenance of chromosomes protein 2 OS=Gallus gallus
GN=SMC2 PE=2 SV=1
Length = 1189
Score = 230 bits (587), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 119/171 (69%), Positives = 140/171 (81%)
Query: 90 MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAG 149
M KK +VE+D+ K+L IEELD KK AL AW KVN DFGSIFS+LLPG++A L P
Sbjct: 1002 MKKKRMVENDKIKILATIEELDRKKNKALHIAWEKVNKDFGSIFSMLLPGAKAMLVPSKK 1061
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
++ILDGLE V G +WKE+L ELSGGQRSL ALSL+LA+LLFKPAP+YILDEVDAALDL
Sbjct: 1062 QNILDGLEFRVGLGDIWKENLTELSGGQRSLAALSLILAILLFKPAPIYILDEVDAALDL 1121
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTV 260
SHTQNIGQML HFK SQF++VSLK+GMF+NANV++RTKFVDG S V+R
Sbjct: 1122 SHTQNIGQMLHAHFKQSQFLVVSLKDGMFNNANVLYRTKFVDGISTVSRHC 1172
>sp|P38989|SMC2_YEAST Structural maintenance of chromosomes protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC2 PE=1 SV=1
Length = 1170
Score = 217 bits (553), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 102/162 (62%), Positives = 127/162 (78%)
Query: 96 VESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDG 155
+E D+ K+ + I +L+E K+ L + W KV DFG+IF+ LLP S AKL P GKD+ G
Sbjct: 1007 IEKDKMKIQETISKLNEYKRETLVKTWEKVTLDFGNIFADLLPNSFAKLVPCEGKDVTQG 1066
Query: 156 LEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI 215
LEV V G +WKESL ELSGGQRSL+ALSL++A+L F+PAP+YILDEVDAALDLSHTQNI
Sbjct: 1067 LEVKVKLGNIWKESLIELSGGQRSLIALSLIMALLQFRPAPMYILDEVDAALDLSHTQNI 1126
Query: 216 GQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVT 257
G ++K FK SQFI+VSLKEGMF+NAN +FRT+F DG S V+
Sbjct: 1127 GHLIKTRFKGSQFIVVSLKEGMFANANRVFRTRFQDGTSVVS 1168
>sp|Q09591|MIX1_CAEEL Mitotic chromosome and X-chromosome-associated protein mix-1
OS=Caenorhabditis elegans GN=mix-1 PE=1 SV=2
Length = 1244
Score = 217 bits (553), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 126/168 (75%)
Query: 91 TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGK 150
K+ + D L K I LD+KK L A VN DFG IF+ LLP + A L PP GK
Sbjct: 1018 NKRERITEDFNMLKKTIATLDKKKVDELIRAHESVNKDFGQIFNCLLPDAHASLVPPEGK 1077
Query: 151 DILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210
+ +GLEV V+FGG+ K+SL ELSGGQRSLVALSL+LAML FKPAPLYILDEVDAALDLS
Sbjct: 1078 TVCEGLEVKVSFGGVVKDSLHELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLS 1137
Query: 211 HTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTR 258
HT NIG M+K HF +QFIIVSLK+GMFSNA+V+F+T+F DG+S TR
Sbjct: 1138 HTANIGMMIKTHFHHNQFIIVSLKQGMFSNADVLFQTRFADGHSTCTR 1185
>sp|P41003|SMC2_SCHPO Structural maintenance of chromosomes protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut14 PE=1 SV=2
Length = 1172
Score = 210 bits (535), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 126/161 (78%)
Query: 96 VESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDG 155
+ D+ K+ ++ +D K+ AL + W +VN+ FG IF LLPG+ A+L PP K+ DG
Sbjct: 1009 IHRDKKKIQDTVKSIDRFKRSALEKTWREVNSSFGEIFDELLPGNSAELQPPENKEFTDG 1068
Query: 156 LEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI 215
LE++V G +WK+SL ELSGGQRSLVAL+L++++L +KPAP+YILDE+DAALDLSHTQNI
Sbjct: 1069 LEIHVKIGSIWKDSLAELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLSHTQNI 1128
Query: 216 GQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNV 256
G+++K FK SQFIIVSLKEGMF+NAN +F +F+DG+S V
Sbjct: 1129 GRLIKTKFKGSQFIIVSLKEGMFTNANRLFHVRFMDGSSVV 1169
>sp|Q8IED2|SMC2_PLAF7 Structural maintenance of chromosomes protein 2 OS=Plasmodium
falciparum (isolate 3D7) GN=MAL13P1.96 PE=3 SV=1
Length = 1218
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 128/169 (75%), Gaps = 1/169 (0%)
Query: 90 MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAG 149
+TKKS VE D+ K+ +VI +LD KK +L + ++N F +IFS LL +QAKLS G
Sbjct: 1019 VTKKSQVEEDKKKIQEVIADLDVKKSESLLAMYQQINEYFQAIFSTLLNNAQAKLSIVDG 1078
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
D+ +G+E+ +AF WKESL ELSGGQRSL+ALSL+LA+L + P+YILDE+DAALDL
Sbjct: 1079 -DLANGIEMKIAFNNNWKESLTELSGGQRSLLALSLILALLKVRTVPMYILDEIDAALDL 1137
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTR 258
+HTQNIG M++ F SQFIIVSLKEGMFS+A+V+F+ +F+DG S V R
Sbjct: 1138 NHTQNIGDMIRTQFPHSQFIIVSLKEGMFSHADVLFKMRFIDGISTVNR 1186
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 100/172 (58%), Gaps = 1/172 (0%)
Query: 87 MEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSP 146
+E +K+ +E+++ +++ I E++++KK + ++ +F IF+ L PG A+L
Sbjct: 982 LELKSKREKLEAEKESIIEFINEIEKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLIL 1041
Query: 147 PAGKDILDG-LEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205
+D G LE+ G + + +SGG+++L AL+ V A+ FKPAP Y+ DE+DA
Sbjct: 1042 ENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDA 1101
Query: 206 ALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVT 257
LD ++ + + ++K K SQFI+++L++ M +NA+ I DG S V
Sbjct: 1102 HLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVSKVV 1153
>sp|Q59037|SMC_METJA Chromosome partition protein Smc OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=smc PE=3 SV=2
Length = 1169
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Query: 88 EAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPP 147
E + K+ E D K L+++EEL+ KKK E + KV +F ++ + G KLS
Sbjct: 997 ELIEKRKEYERDEKKYLQLMEELENKKKEVFMEVFNKVAKNFEEVYKEI--GGIGKLSLE 1054
Query: 148 AGKDILDG-LEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206
K+ +G + ++ + G SL +SGG++SL AL+ + A+ P+P Y+LDEVDAA
Sbjct: 1055 NEKNPFEGGILIDASPRGKKLLSLDAMSGGEKSLTALAFLFAIQRLNPSPFYVLDEVDAA 1114
Query: 207 LDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVT 257
LD+ + I M+K K SQFI++S +E M S A+V++ +G S V
Sbjct: 1115 LDVKNVSLIADMIKNASKDSQFIVISHREQMVSKADVVYGVYMENGLSKVV 1165
>sp|B8CW13|SMC_HALOH Chromosome partition protein Smc OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=smc PE=3 SV=1
Length = 1185
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Query: 103 LLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD-GLEVNVA 161
+ KVI+E++E EA+LKVN +F + F L G QA L +++L+ G+E+
Sbjct: 1020 ITKVIQEIEETMSSLFHEAFLKVNGEFNNTFKELFNGGQASLKLTEPENLLETGVEIVAQ 1079
Query: 162 FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
G + L +SGG+R+L A++LV A L P+P YILDE+DA LD ++ + +K
Sbjct: 1080 PPGKQLKKLSLMSGGERALTAIALVFAFLKVNPSPFYILDEIDAPLDDANVTRFARYIKE 1139
Query: 222 HFKTSQFIIVSLKEGMFSNANVIF 245
+ + +QF+IV+ ++ M + A I+
Sbjct: 1140 YSRFAQFLIVTHRKNMMAEAETIY 1163
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 87/141 (61%), Gaps = 1/141 (0%)
Query: 105 KVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDG-LEVNVAFG 163
K+IEE + KK+ EA+ ++N IFS L PG +A++ +D G +++ V
Sbjct: 989 KLIEETENKKRKVFLEAFNQINKSLKRIFSFLSPGGKAQMFLDNPEDPFSGGVQLTVKPR 1048
Query: 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF 223
G + L +SGG+++L ALSL+ A+ +KP+P Y DEVDA LD + + +G++++
Sbjct: 1049 GKDVQYLEAMSGGEKTLAALSLIFALQEYKPSPFYYFDEVDAHLDEVNAKKVGELIREKS 1108
Query: 224 KTSQFIIVSLKEGMFSNANVI 244
K +QFI+V+L+E + S A+ I
Sbjct: 1109 KEAQFIVVTLREVVTSFADKI 1129
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Query: 103 LLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDIL-DGLEVNVA 161
L +VIEE+DE+ + ++++ + F +F L G +A+L D+L G+E+
Sbjct: 1018 LFQVIEEMDEEMTKRFNDTFVQIRSHFDQVFRSLFGGGRAELRLTDPNDLLHSGVEIIAQ 1077
Query: 162 FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
G ++L LSGG+R+L A++L+ ++L +P P +LDEV+AALD ++ Q LK+
Sbjct: 1078 PPGKKLQNLNLLSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKK 1137
Query: 222 HFKTSQFIIVSLKEGMFSNANVIF 245
+ +QFI+++ ++G A+V++
Sbjct: 1138 YSSDTQFIVITHRKGTMEEADVLY 1161
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc PE=3
SV=1
Length = 1199
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 3/159 (1%)
Query: 88 EAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPP 147
E K+ E + K L++I E+ ++KK + + +V ++ I+ + G KLS
Sbjct: 1027 ELFGKRKEYEQEEGKYLQLISEVQKRKKETFMKTYDRVAENYEQIYGEI--GGNGKLSLE 1084
Query: 148 AGKDILDG-LEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206
+D G L ++ + ++L +SGG++SL AL+ + A+ P+P Y+LDEVDAA
Sbjct: 1085 NEEDPFSGGLLIDASPMNKQLQNLDVMSGGEKSLTALAFLFAIQRLNPSPFYVLDEVDAA 1144
Query: 207 LDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245
LD + IG M+ K SQFI++S +E M S +NV++
Sbjct: 1145 LDTKNASLIGDMISNASKESQFIVISHREQMISKSNVMY 1183
>sp|Q552D9|SMC3_DICDI Structural maintenance of chromosome protein 3 OS=Dictyostelium
discoideum GN=smc3 PE=3 SV=1
Length = 1437
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 32/204 (15%)
Query: 81 TLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGS 140
T + S+EA + + ES+ A + +I+ LD KK A+ + V +F +F L+PG
Sbjct: 985 TNQYNSLEAR-RDELYESN-ASIQLLIKTLDNKKDEAIARTFSGVAKNFTQVFKELIPGG 1042
Query: 141 QAKL----------------------SPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQ 177
AKL P G G+ + V+FG G S+ +LSGGQ
Sbjct: 1043 SAKLVMKRQMDEDEGEGEDPKEWADGETPKGLLTFTGIGIQVSFGEGHEPCSMRQLSGGQ 1102
Query: 178 RSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM 237
++LVAL+L+ A+ PAP Y+LDE+DAALD ++ + +M+++H + QFI +
Sbjct: 1103 KTLVALALIFALQRTDPAPFYLLDEIDAALDHNYRVAVSKMIRKHSREIQFIATTFGPEF 1162
Query: 238 FSNAN----VIFR---TKFVDGNS 254
+AN V+F +K V G++
Sbjct: 1163 VMDANQNWIVVFNKGGSKLVPGST 1186
>sp|B9E1H0|SMC_CLOK1 Chromosome partition protein Smc OS=Clostridium kluyveri (strain NBRC
12016) GN=smc PE=3 SV=1
Length = 1185
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 103/179 (57%), Gaps = 6/179 (3%)
Query: 69 VKVGAM--VKAPLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126
V +GA+ K + + F+S + K+ +++S + +L KVI+ + EK K +E ++K+
Sbjct: 994 VNLGAIEEYKNLQKKITFLSSQ---KEDLIKS-KQELKKVIDAMTEKMKGVFKENFVKLK 1049
Query: 127 TDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLV 186
+F F L G A L G ++ +++ V G +++ +SGG++ L A++L+
Sbjct: 1050 KNFNDTFRELFKGGSADLVLTKGDELTGNIDITVQPPGKKLQNINLMSGGEKGLSAIALL 1109
Query: 187 LAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245
AML KP P ILDE++A+LD ++ + L++ + +QFI+++ ++G ++V++
Sbjct: 1110 FAMLKIKPTPFCILDEIEASLDDANVLRYAEFLRKFSRDTQFIVITHRKGTMEVSDVLY 1168
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 89 AMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPA 148
A + +V+S R +++ +I+E+DE+ + +N +F + + ++ +L+
Sbjct: 997 ARERDDVVKS-RKQVMDLIQEIDERIHEDFHTTYQNINENFNKMCDETIRNTEGRLNIIN 1055
Query: 149 GKDILD-GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207
+D + G+E+ V F K+ L LSGG++S+VA++ ++A+ ++KP+P LDE++AAL
Sbjct: 1056 PEDFENCGIEIFVKFKNKKKQPLSLLSGGEKSMVAIAFIMAIFMYKPSPFTFLDEIEAAL 1115
Query: 208 DLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245
D +T+N+ L+ SQFI+++ + ++ IF
Sbjct: 1116 DEKNTKNLLGKLRDFTDKSQFILITHNKETMKESDSIF 1153
>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4 OS=Caenorhabditis
elegans GN=smc-4 PE=1 SV=1
Length = 1549
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 131 SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF-----GGLWKESLGELSGGQRSLVALSL 185
++F +L G AKL D D ++F WK+ + LSGG+++L +L+L
Sbjct: 1235 AVFKMLTDGGDAKLE---YIDKDDPFRQGISFMVRPAKKAWKQ-IQFLSGGEKTLSSLAL 1290
Query: 186 VLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245
+ A+ +F+P P Y++DE+DAALD + I Q +++ + +QFII+SL+ MF AN +
Sbjct: 1291 IFALHMFRPTPFYVMDEIDAALDYRNVSIIAQYVRQKTENAQFIIISLRNNMFELANRLV 1350
Query: 246 RTKFVDGNSNVTRTV 260
VDG TR V
Sbjct: 1351 GIYKVDG---CTRNV 1362
>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1 SV=1
Length = 1230
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 130/284 (45%), Gaps = 41/284 (14%)
Query: 20 LERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLF----ISMKKYLGSMSSFSVKVGAMV 75
+E+T+ KK L R EE Q ++ + P L+ I+ + L ++ + ++ +
Sbjct: 933 VEKTMIKKTTLVTRREELQQRIREIGLLPEDALVNDFSDITSDQLLQRLNDMNTEISGLK 992
Query: 76 KAPLRTLLFISMEAMTKKSIVES----DRAK--LLKVIEELDEKKKIALREAWLKVNTDF 129
R +K + E D +K + +I +L ++K A+ + KV+ +F
Sbjct: 993 NVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIVKLKQQKVNAVDSTFQKVSENF 1052
Query: 130 GSIFSLLLPGSQAKL-------------------------SPPAGKD---ILDGLEVNVA 161
++F L+P AKL GKD + G+ ++V+
Sbjct: 1053 EAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAESNESQNGKDSEIMYTGVSISVS 1112
Query: 162 FGGLWKESLG--ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
F E L +LSGGQ+++ A++L+LA+ + PA Y+ DE+DAALD + + +L
Sbjct: 1113 FNSKQNEQLHVEQLSGGQKTVCAIALILAIQMVDPASFYLFDEIDAALDKQYRTAVATLL 1172
Query: 220 KRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTVNRK 263
K K +QFI + + M A+ FR K+ + S V VNR+
Sbjct: 1173 KELSKNAQFICTTFRTDMLQVADKFFRVKYENKISTVIE-VNRE 1215
>sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes protein 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm3 PE=1 SV=1
Length = 1194
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 123/286 (43%), Gaps = 49/286 (17%)
Query: 4 HEVTRKYQKLKEQRDKL-ERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLG 62
HEV + EQ K+ ER K++ L R +E K+ ++ P + + KY+
Sbjct: 897 HEVATRI----EQDAKINERNAAKRSLLLARKKECNEKIKSLGVLPEEAFI-----KYVS 947
Query: 63 SMSSFSVKVGAMVKAPLRTLLFISMEAMTKKSIVESDRAKLLKVIEEL------------ 110
+ S+ VK + L+ ++ +A + + R LL EEL
Sbjct: 948 TSSNAIVKKLHKINEALKDYGSVNKKAYEQFNNFTKQRDSLLARREELRRSQESISELTT 1007
Query: 111 --DEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKL--------------------SPPA 148
D++K A+ + +V F IF L+P + +L P+
Sbjct: 1008 VLDQRKDEAIERTFKQVAKSFSEIFVKLVPAGRGELVMNRRSELSQSIEQDISMDIDTPS 1067
Query: 149 GKDILD---GLEVNVAFGGLWKESLG--ELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203
K +D G+ + V+F E L +LSGGQ+SL AL+L+ A+ PAP ILDE
Sbjct: 1068 QKSSIDNYTGISIRVSFNSKDDEQLNINQLSGGQKSLCALTLIFAIQRCDPAPFNILDEC 1127
Query: 204 DAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKF 249
DA LD + I M+K KTSQFI + + M A+ + F
Sbjct: 1128 DANLDAQYRSAIAAMVKEMSKTSQFICTTFRPEMVKVADNFYGVMF 1173
>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis
GN=smc3 PE=1 SV=2
Length = 1209
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 100 RAKLLKVIEELDE--------------KKKIALREAWLKVNTDFGSIFSLLLPGSQAKLS 145
+ KL+K EELD +K A++ + +V+ +F +F L+PG +A L
Sbjct: 997 KEKLIKRQEELDRGHKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLV 1056
Query: 146 PPAGK---------------------DILDGLEVNVAFGGLWKE--SLGELSGGQRSLVA 182
G D G+ + V+F G E + +LSGGQ+SLVA
Sbjct: 1057 MKKGDVEGSQSQDEGEGSTQSSVPSVDQFTGVGIRVSFTGKQAEMREMQQLSGGQKSLVA 1116
Query: 183 LSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNAN 242
L+L+ A+ PAP Y+ DE+D ALD H + + M+ +QFI + + + +A+
Sbjct: 1117 LALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELASHAQFITTTFRPELLESAD 1176
Query: 243 VIFRTKFVDGNSNV 256
+ KF + S++
Sbjct: 1177 KFYGVKFRNKVSHI 1190
>sp|Q24U48|SMC_DESHY Chromosome partition protein Smc OS=Desulfitobacterium hafniense
(strain Y51) GN=smc PE=3 SV=1
Length = 1198
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 92 KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKD 151
+K +E L ++I ELD+ E ++ VN F +F L G A+L +
Sbjct: 1017 QKQDLEEANESLQQLIAELDKTMSERFEEGFIAVNEAFKVVFKELFNGGYAELRLVDPTN 1076
Query: 152 ILD-GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210
+LD G+E+ G + L LSGG+R+L A+ L+ A+L KP+P +LDE++A+LD +
Sbjct: 1077 LLDTGVEIIAQPPGKKPQLLSLLSGGERALTAIGLLFALLKVKPSPFCVLDEIEASLDDA 1136
Query: 211 HTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245
+ Q + R ++QF+++S ++G A+V++
Sbjct: 1137 NVSRFAQYIHRLSDSTQFLVISHRKGTMEAADVLY 1171
>sp|Q7NG51|SMC_GLOVI Chromosome partition protein Smc OS=Gloeobacter violaceus (strain PCC
7421) GN=smc PE=3 SV=1
Length = 1165
Score = 82.4 bits (202), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 84/155 (54%)
Query: 88 EAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPP 147
E K + ++ +R++LL IE+ D K+ A +A+ VNT F S+F+ L G
Sbjct: 986 ELSEKLATLQRERSELLLRIEDCDTLKRSAFMQAFDAVNTHFQSLFAELSDGDGHLALED 1045
Query: 148 AGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207
GL + G L +SGG++SL ALS + A+ ++P+P Y DEVD L
Sbjct: 1046 PDNPFAGGLTLVAHPRGKQVRRLEAMSGGEKSLTALSFIFALQRYRPSPFYAFDEVDMFL 1105
Query: 208 DLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNAN 242
D ++ + + +M+++ ++QF++VSL+ M A+
Sbjct: 1106 DGANVERLAKMVRQQANSTQFLVVSLRRPMIERAD 1140
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 21/163 (12%)
Query: 109 ELDEKKKIALREAWLKVNT---DFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-- 163
+ DE +K L E NT ++ ++ G A+L D LD V F
Sbjct: 1074 QYDELRKRRLDEFMAGFNTISLKLKEMYQMITLGGDAELELV---DSLDPFSEGVVFSVR 1130
Query: 164 ---GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
WK ++ LSGG+++L +L+LV A+ +KP PLY++DE+DAALD + +G +K
Sbjct: 1131 PPKKSWK-NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVK 1189
Query: 221 RHFKTSQFIIVSLKEGMFSNANV---IFRTKFVDGNSNVTRTV 260
K +QFII+SL+ MF A+ I++T N T+++
Sbjct: 1190 DRTKDAQFIIISLRNNMFELADRLVGIYKT------DNCTKSI 1226
>sp|C4ZJU1|SMC_THASP Chromosome partition protein Smc OS=Thauera sp. (strain MZ1T) GN=smc
PE=3 SV=2
Length = 1208
Score = 81.3 bits (199), Expect = 6e-15, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 13/185 (7%)
Query: 56 SMKKYLGSMSSFSVKVGAMVKAPLRTLLFISMEAMTKKSIVESDRAKLLKVIEEL----- 110
++++ + ++ ++GA+ A L L A +K +++ LL+ I+ L
Sbjct: 987 TLQREVARLAREIAELGAVNMAALDEL----TTASERKGYLDAQTEDLLQAIDTLEDAIR 1042
Query: 111 --DEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD-GLEVNVAFGGLWK 167
D + + L++ + VN FG++F L G +A+L G++ILD G+++ G
Sbjct: 1043 RIDRETREQLQDTYNTVNRQFGALFPQLFGGGRAELVL-TGEEILDAGIQIVAQPPGKKN 1101
Query: 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQ 227
S+ LSGG+++L A++LV +M PAP +LDEVDA LD ++T+ M+KR +Q
Sbjct: 1102 ASIHLLSGGEKALTAIALVFSMFQLNPAPFCMLDEVDAPLDDTNTERYANMVKRMSAQTQ 1161
Query: 228 FIIVS 232
FI +S
Sbjct: 1162 FIFIS 1166
>sp|Q9CW03|SMC3_MOUSE Structural maintenance of chromosomes protein 3 OS=Mus musculus
GN=Smc3 PE=1 SV=2
Length = 1217
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 45/202 (22%)
Query: 100 RAKLLKVIEELDE--------------KKKIALREAWLKVNTDFGSIFSLLLPGSQAKLS 145
+ KL+K EELD +K A++ + +V+ +F +F L+PG +A L
Sbjct: 997 KEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLV 1056
Query: 146 PPAGK-----------------------------DILDGLEVNVAFGGLWKE--SLGELS 174
G D G+ + V+F G E + +LS
Sbjct: 1057 MKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLS 1116
Query: 175 GGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK 234
GGQ+SLVAL+L+ A+ PAP Y+ DE+D ALD H + + M+ +QFI + +
Sbjct: 1117 GGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFR 1176
Query: 235 EGMFSNANVIFRTKFVDGNSNV 256
+ +A+ + KF + S++
Sbjct: 1177 PELLESADKFYGVKFRNKVSHI 1198
>sp|Q5R4K5|SMC3_PONAB Structural maintenance of chromosomes protein 3 OS=Pongo abelii
GN=SMC3 PE=2 SV=1
Length = 1217
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 45/202 (22%)
Query: 100 RAKLLKVIEELDE--------------KKKIALREAWLKVNTDFGSIFSLLLPGSQAKLS 145
+ KL+K EELD +K A++ + +V+ +F +F L+PG +A L
Sbjct: 997 KEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLV 1056
Query: 146 PPAGK-----------------------------DILDGLEVNVAFGGLWKE--SLGELS 174
G D G+ + V+F G E + +LS
Sbjct: 1057 MKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLS 1116
Query: 175 GGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK 234
GGQ+SLVAL+L+ A+ PAP Y+ DE+D ALD H + + M+ +QFI + +
Sbjct: 1117 GGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFR 1176
Query: 235 EGMFSNANVIFRTKFVDGNSNV 256
+ +A+ + KF + S++
Sbjct: 1177 PELLESADKFYGVKFRNKVSHI 1198
>sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens
GN=SMC3 PE=1 SV=2
Length = 1217
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 45/202 (22%)
Query: 100 RAKLLKVIEELDE--------------KKKIALREAWLKVNTDFGSIFSLLLPGSQAKLS 145
+ KL+K EELD +K A++ + +V+ +F +F L+PG +A L
Sbjct: 997 KEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLV 1056
Query: 146 PPAGK-----------------------------DILDGLEVNVAFGGLWKE--SLGELS 174
G D G+ + V+F G E + +LS
Sbjct: 1057 MKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLS 1116
Query: 175 GGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK 234
GGQ+SLVAL+L+ A+ PAP Y+ DE+D ALD H + + M+ +QFI + +
Sbjct: 1117 GGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFR 1176
Query: 235 EGMFSNANVIFRTKFVDGNSNV 256
+ +A+ + KF + S++
Sbjct: 1177 PELLESADKFYGVKFRNKVSHI 1198
>sp|P41004|SMC4_SCHPO Structural maintenance of chromosomes protein 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut3 PE=1 SV=2
Length = 1324
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 88 EAMTKKSIVESD---RAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKL 144
EA + S +S+ R L KV+ +L ++ + ++ ++ ++ G A+L
Sbjct: 1141 EAEKRDSDYQSELQKRTDLKKVVTDLQSQRLDEFMYGFGIISMKLKEMYQIITMGGNAEL 1200
Query: 145 SPPAGKDILDGLEVNVAFGGL-----WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199
D LD V F + WK ++ LSGG+++L +L+LV A+ +KP PLY+
Sbjct: 1201 ELV---DSLDPFSEGVLFSVMPPKKSWK-NISNLSGGEKTLSSLALVFALHNYKPTPLYV 1256
Query: 200 LDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF 238
+DE+DAALD + + +K K +QFI++SL+ MF
Sbjct: 1257 MDEIDAALDFKNVSIVANYIKERTKNAQFIVISLRSNMF 1295
>sp|O97594|SMC3_BOVIN Structural maintenance of chromosomes protein 3 OS=Bos taurus GN=SMC3
PE=1 SV=1
Length = 1218
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 46/203 (22%)
Query: 100 RAKLLKVIEELDE--------------KKKIALREAWLKVNTDFGSIFSLLLPGSQAKL- 144
+ KL+K EELD +K A++ + +V+ +F +F L+PG +A L
Sbjct: 997 KEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLV 1056
Query: 145 -------------------------SPPAGK----DILDGLEVNVAFGGLWKE--SLGEL 173
S P D G+ + V+F G E + +L
Sbjct: 1057 MKKRRXERQSGLRMKEKGVVKGERGSGPQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQL 1116
Query: 174 SGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSL 233
SGGQ+SLVAL+L+ A+ PAP Y+ DE+D ALD H + + M+ +QFI +
Sbjct: 1117 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTF 1176
Query: 234 KEGMFSNANVIFRTKFVDGNSNV 256
+ + +A+ + KF + S++
Sbjct: 1177 RPELLESADKFYGVKFRNKVSHI 1199
>sp|Q3JR19|SMC_BURP1 Chromosome partition protein Smc OS=Burkholderia pseudomallei (strain
1710b) GN=smc PE=3 SV=2
Length = 1170
Score = 78.2 bits (191), Expect = 5e-14, Method: Composition-based stats.
Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 15/236 (6%)
Query: 8 RKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMK-KYL-GSMS 65
R Q L+++ +L+ ++ A+++ Q + +A LK L MK YL G ++
Sbjct: 900 RSLQPLRDRITELQLK-EQAARMTGEQFAEQLATAEVDEAALKEKLMPDMKPSYLQGEVT 958
Query: 66 SFSVKVGAMVKAPLRTLLFISMEAMTKKSI-VESDRAKLLKVIEEL-------DEKKKIA 117
+ + A+ P+ + A +++ + +++ A L IE L D++ +
Sbjct: 959 RINNAINAL--GPVNMAALDELAAASERKVFLDAQSADLTNAIETLEDAIRKIDQETRAL 1016
Query: 118 LREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD-GLEVNVAFGGLWKESLGELSGG 176
L+ + +VN F +F L G QAKL G +ILD G++V G ++ LSGG
Sbjct: 1017 LQATFDEVNRHFSDLFPRLFGGGQAKLIM-TGDEILDAGVQVMAQPPGKKNATIHLLSGG 1075
Query: 177 QRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
+++L A +LV AM PAP +LDEVDA LD ++T+ +++ +QF+ +S
Sbjct: 1076 EKALTATALVFAMFQLNPAPFCLLDEVDAPLDDANTERFANLVRAMSDKTQFLFIS 1131
>sp|Q73VM3|SMC_MYCPA Chromosome partition protein Smc OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=smc PE=3 SV=2
Length = 1196
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 91 TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGK 150
T+ V++ R LL V++E+D + EA+ V +F +F +L PG + +L
Sbjct: 1013 TQLEDVKAARKDLLGVVDEVDARILQVFSEAYTDVEREFSDVFGVLFPGGEGRLRLTDPS 1072
Query: 151 DILD-GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
++L G+EV G L LSGG+++L A+++++A+ +P+P YI+DEV+AALD
Sbjct: 1073 NMLTTGIEVEARPPGKKITRLSLLSGGEKALTAVAMLVAIFRARPSPFYIMDEVEAALDD 1132
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245
++ + + + + SQ II++ ++ A+ ++
Sbjct: 1133 TNLRRLISLFELLRARSQLIIITHQKPTMEVADALY 1168
>sp|Q88WJ9|SMC_LACPL Chromosome partition protein Smc OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=smc PE=3 SV=1
Length = 1185
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Query: 103 LLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDIL-DGLEVNVA 161
LL+ + +LD + A+ +V ++F +IF + G +A+L + +L G+++
Sbjct: 1017 LLQTMADLDTTVATRFKTAFDQVASEFSTIFEQMFGGGKAELILTDPEHLLTSGVDIMAQ 1076
Query: 162 FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
G + L LSGG+R+L A++L+ A+L +P P ILDE +AALD ++ Q L
Sbjct: 1077 PPGKKFQRLSLLSGGERALTAITLLFAILAVRPVPFSILDEAEAALDDANVDRFSQYLND 1136
Query: 222 HFKTSQFIIVSLKEGMFSNANVIF 245
+QF+I++ ++G +A+V++
Sbjct: 1137 FQTGTQFVIITHRKGTMMHADVLY 1160
>sp|Q920F6|SMC1B_MOUSE Structural maintenance of chromosomes protein 1B OS=Mus musculus
GN=Smc1b PE=1 SV=1
Length = 1248
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 108 EELDEKKKIALREAWLKVNTDFGSIFSLLL--PGSQAKLSPPAGKD-ILDGLEVNVAFGG 164
E++ ++ A + + ++ I+ L +QA LSP ++ LDG+ N G
Sbjct: 1055 EQVKRRRYDAFSQCFEHISVSIDQIYKKLCRNNSAQAFLSPENPEEPYLDGISYNCVAPG 1114
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK 224
+ LSGG++ + AL+L+ A+ F+PAP ++LDEVDAALD ++ + +K +
Sbjct: 1115 KRFMPMDNLSGGEKCVAALALLFAVHSFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQSQ 1174
Query: 225 TS-QFIIVSLKEGMFSNANVIF 245
Q II+SLKE +S A+ +
Sbjct: 1175 EQFQMIIISLKEEFYSKADALI 1196
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1 SV=1
Length = 1418
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 151 DILDGLEVNVAFGGL-----WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205
D LD V F + W+ ++ LSGG+++L +L+LV A+ +KP PLY++DE+DA
Sbjct: 1297 DSLDPFSEGVTFSVMPPKKSWR-NITNLSGGEKTLSSLALVFALHKYKPTPLYVMDEIDA 1355
Query: 206 ALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF 238
ALD + + +K K +QFI++SL+ MF
Sbjct: 1356 ALDFRNVSIVANYIKERTKNAQFIVISLRNNMF 1388
>sp|A9BZW2|SMC_DELAS Chromosome partition protein Smc OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=smc PE=3 SV=2
Length = 1175
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 103 LLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD-GLEVNVA 161
L I ++D + + L + VN FG +F L G QAKL G +ILD G++V
Sbjct: 1006 LEDAIRKIDAETRELLSGTFETVNGHFGRMFPELFGGGQAKL-VITGDEILDSGVQVIAQ 1064
Query: 162 FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
G +++ LSGG+++L A++LV A+ PAP +LDEVDA LD ++T+ +++
Sbjct: 1065 PPGKKNQTIHLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVAS 1124
Query: 222 HFKTSQFIIVS 232
K++QF+ +S
Sbjct: 1125 MSKSTQFLFIS 1135
>sp|Q00737|SUDA_EMENI Chromosome segregation protein sudA OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=sudA PE=2 SV=3
Length = 1215
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 119/278 (42%), Gaps = 51/278 (18%)
Query: 14 KEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFI---SMKKYLGSMSSFSVK 70
K QR ++E+++ KKA L+ K A A ++ L + + KY + S+ VK
Sbjct: 923 KHQR-RMEKSMQKKAALT--------KQAAECAANIRDLGVLPDEAFTKYKNTDSNTVVK 973
Query: 71 VGAMVKAPLRTLLFISMEAMTKKSIVESDRAKLLKVIEELD--------------EKKKI 116
V L+ ++ +A + + R L EELD +K
Sbjct: 974 KLHKVNEALKKYAHVNKKAFEQYNNFTKQRETLTSRREELDASQKSIDDLISVLDHRKDE 1033
Query: 117 ALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD---------------------G 155
A+ + +V+ +F +IF L+P + +L D G
Sbjct: 1034 AIERTFKQVSREFATIFEKLVPAGRGRLIIQRKTDRTQRAEDDLESEDEEAKHSVENYVG 1093
Query: 156 LEVNVAFGGLW--KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
+ ++V+F ++ + +LSGGQ+SL AL+LV A+ PAP Y+ DE+DA LD +
Sbjct: 1094 VGISVSFNSKHDDQQRIQQLSGGQKSLCALALVFAIQACDPAPFYLFDEIDANLDAQYRT 1153
Query: 214 NIGQMLKRHFKTS--QFIIVSLKEGMFSNANVIFRTKF 249
+ QMLK ++ QFI + + M A + F
Sbjct: 1154 AVAQMLKTISDSTNGQFICTTFRPEMLHVAEKCYGVSF 1191
>sp|Q9CBT5|SMC_MYCLE Chromosome partition protein Smc OS=Mycobacterium leprae (strain TN)
GN=smc PE=3 SV=1
Length = 1203
Score = 76.6 bits (187), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 91 TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGK 150
T+ V+ R LL V+ E+D + +A++ V +F +F+ L PG + +L
Sbjct: 1018 TQLEDVKGARKDLLDVVAEVDARILQVFSDAFVDVEREFRGVFTSLFPGGEGRLRLTDPD 1077
Query: 151 DILD-GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
D+L G+EV G L LSGG++SL+A+++++A+ +P+P YI+DEV+AALD
Sbjct: 1078 DMLTTGIEVEARPSGKKVSRLSLLSGGEKSLIAVAMLVAIFKARPSPFYIMDEVEAALDD 1137
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245
+ + + ++ SQ II++ ++ A+ ++
Sbjct: 1138 VNLCRLIGVFEQLRGQSQLIIITHQKPTMEVADTLY 1173
>sp|Q7ZAK1|SMC_THEEB Chromosome partition protein Smc OS=Thermosynechococcus elongatus
(strain BP-1) GN=smc PE=3 SV=1
Length = 1168
Score = 76.3 bits (186), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 87/159 (54%), Gaps = 10/159 (6%)
Query: 88 EAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGS-----QA 142
E K +++ ++R ++L IE + + REA+ +N +F +IF+ L G ++
Sbjct: 990 ELQEKLAVLAAERTEILLRIENFTTLRHQSFREAFDAINANFQTIFATLSDGDGYLQLES 1049
Query: 143 KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202
P AG GL + G + L +SGG++SL ALS + A+ ++P+P Y DE
Sbjct: 1050 PEDPFAG-----GLNLVAHPKGKPVQRLASMSGGEKSLTALSFIFALQRYRPSPFYAFDE 1104
Query: 203 VDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNA 241
VD LD ++ + + +M+++ + +QFI+VSL+ M A
Sbjct: 1105 VDMFLDGANVERLAKMIQQQSQQAQFIVVSLRRPMIEAA 1143
>sp|Q10970|SMC_MYCTU Chromosome partition protein Smc OS=Mycobacterium tuberculosis GN=smc
PE=3 SV=2
Length = 1205
Score = 76.3 bits (186), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 91 TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGK 150
T+ V++ R LL V+ ++D + +A++ V +F +F+ L PG + +L
Sbjct: 1020 TQLEDVKAARKDLLGVVADVDARILQVFNDAFVDVEREFRGVFTALFPGGEGRLRLTEPD 1079
Query: 151 DILD-GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
D+L G+EV G L LSGG+++L A+++++A+ +P+P YI+DEV+AALD
Sbjct: 1080 DMLTTGIEVEARPPGKKITRLSLLSGGEKALTAVAMLVAIFRARPSPFYIMDEVEAALDD 1139
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245
+ + + + ++ + SQ II++ ++ A+ ++
Sbjct: 1140 VNLRRLLSLFEQLREQSQIIIITHQKPTMEVADALY 1175
>sp|P48996|DPY27_CAEEL Chromosome condensation protein dpy-27 OS=Caenorhabditis elegans
GN=dpy-27 PE=1 SV=1
Length = 1469
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 166 WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT 225
WK + LSGG+++L +L V AM ++P PLY++DE+DAALDL++ I +K +T
Sbjct: 1239 WK-LIENLSGGEKTLASLCFVFAMHHYRPTPLYVMDEIDAALDLNNVSLIANYIKHSERT 1297
Query: 226 --SQFIIVSLKEGMFSNANVIFRTKFVDGNS 254
+QFII+SL+ MF N + +DG +
Sbjct: 1298 RNAQFIIISLRNQMFEVGNRLLGIYKIDGKT 1328
>sp|Q5N0D2|SMC_SYNP6 Chromosome partition protein Smc OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=smc PE=3 SV=2
Length = 1195
Score = 75.5 bits (184), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 82/154 (53%)
Query: 88 EAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPP 147
E K + +E++R +LL IE ++ A E++ ++ +F IF+ L G +
Sbjct: 1020 ELSEKLTTIEAERTELLLRIENFTTLRRRAFMESFEAIDRNFQEIFAHLSDGDGSLQLDN 1079
Query: 148 AGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207
GL + G L +SGG++SL ALS + A+ ++P+P Y LDEVD+ L
Sbjct: 1080 PEDPFSSGLNLIAHPKGKPVRRLASMSGGEKSLTALSFIFALQRYRPSPFYALDEVDSFL 1139
Query: 208 DLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNA 241
D ++ + + +++++ + +QFI+VS + M A
Sbjct: 1140 DGANVERLARVIRQQAQAAQFIVVSHRRPMIEAA 1173
>sp|Q54LV0|SMC4_DICDI Structural maintenance of chromosomes protein 4 OS=Dictyostelium
discoideum GN=smc4 PE=3 SV=1
Length = 1415
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 18/173 (10%)
Query: 96 VESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDG 155
+E +R L K E L + + + + I+ ++ G A+L D D
Sbjct: 1212 IEKERDNLSKRYESLRKNRLDEFMAGFTIITMKLKEIYQMITLGGDAELEII---DREDP 1268
Query: 156 LEVNVAFG-----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210
+ ++F WK ++ LSGG+++L +L+LV A+ +KP LY++DE+DAALD
Sbjct: 1269 FQEGISFSVRPPKKSWK-NISNLSGGEKTLSSLALVFALHHYKPNALYVMDEIDAALDFK 1327
Query: 211 HTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANV---IFRTKFVDGNSNVTRTV 260
+ I +K K +QFII+SL+ MF A+ I++T N T++V
Sbjct: 1328 NVSIIANYIKERTKNAQFIIISLRNYMFELADRLVGIYKT------DNCTKSV 1374
>sp|P97690|SMC3_RAT Structural maintenance of chromosomes protein 3 OS=Rattus norvegicus
GN=Smc3 PE=1 SV=1
Length = 1191
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 45/188 (23%)
Query: 100 RAKLLKVIEELDE--------------KKKIALREAWLKVNTDFGSIFSLLLPGSQAKLS 145
+ KL+K EELD +K A++ + +V+ +F +F L+PG++A L
Sbjct: 997 KEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGAKATLV 1056
Query: 146 PPAGK-----------------------------DILDGLEVNVAFGGLWKE--SLGELS 174
G D G+ + V+F G E + +LS
Sbjct: 1057 MKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLS 1116
Query: 175 GGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK 234
GGQ+SLVAL+L+ A+ PAP Y+ DE+D ALD H + + M+ +QFI + +
Sbjct: 1117 GGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFR 1176
Query: 235 EGMFSNAN 242
+ +A+
Sbjct: 1177 PELLESAD 1184
>sp|Q1INB1|SMC_KORVE Chromosome partition protein Smc OS=Koribacter versatilis (strain
Ellin345) GN=smc PE=3 SV=1
Length = 1308
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 88 EAMTKKSIVESDRAKLLKVIE-------ELDEKKKIALREAWLKVNTDFGSIFSLLLPGS 140
E + +E+ R LL IE E+D+ K+ EA+ +N +FG F L G
Sbjct: 1117 ETAQRHEFLETQRKDLLDSIENTQNTIKEIDQITKVKFDEAFAAINENFGKAFKKLFGGG 1176
Query: 141 QA--KLSPPAGKDILD----GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKP 194
Q KL+ D L+ G++V + G +++ LSGG+++L A SL++ + + P
Sbjct: 1177 QGFMKLT-----DELNSSDSGIDVIASPPGKKLQNVLLLSGGEKTLTAFSLLVGIFQYAP 1231
Query: 195 APLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245
+P ILDEVDA LD ++ +++K +QFI+++ + + A V++
Sbjct: 1232 SPFCILDEVDAPLDETNVARFNELVKEMSMQTQFILITHSKRTMATAPVMY 1282
>sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1 SV=1
Length = 1225
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTS-QFIIV 231
LSGG++++ AL+L+ A+ ++P+P ++LDEVDAALD+++ Q I ++RH QFI++
Sbjct: 1129 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVI 1188
Query: 232 SLKEGMFSNANVI 244
SLK MF ++ +
Sbjct: 1189 SLKNTMFEKSDAL 1201
>sp|P41508|SMC_MYCHR Chromosome partition protein Smc OS=Mycoplasma hyorhinis GN=smc
PE=1 SV=2
Length = 979
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 99/180 (55%), Gaps = 15/180 (8%)
Query: 75 VKAPLRTLLFISMEAMT-----------KKSIVE---SDRAKLLKVIEELDEKKKIALRE 120
+K L+ L +++EA+T KK +E + ++K+ + I +LD+ E
Sbjct: 765 LKKELKELGNVNLEAITEFEEVNQRYQEKKQYIEELTTAKSKIEEAISDLDKIIINKTTE 824
Query: 121 AWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD-GLEVNVAFGGLWKESLGELSGGQRS 179
VN +F +F + G +A++ DIL+ G+E++ G ++L SGG+++
Sbjct: 825 IVNLVNNEFNMVFQKMFGGGKAEIHFTDKNDILNSGVEISAQPPGKTIKNLRLFSGGEKA 884
Query: 180 LVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFS 239
++A+SL+ A+L +P PL ILDEV+AALD S+ + LK + +QF+I++ + G S
Sbjct: 885 IIAISLLFAILKARPIPLCILDEVEAALDESNVIRYVEFLKLLKENTQFLIITHRSGTMS 944
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,463,847
Number of Sequences: 539616
Number of extensions: 3268541
Number of successful extensions: 14373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 624
Number of HSP's that attempted gapping in prelim test: 13886
Number of HSP's gapped (non-prelim): 906
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)