Query psy17516
Match_columns 264
No_of_seqs 402 out of 3347
Neff 6.9
Searched_HMMs 46136
Date Sat Aug 17 00:34:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1136 SalX ABC-type antimicr 100.0 2E-42 4.2E-47 303.1 6.0 192 32-253 4-219 (226)
2 COG1126 GlnQ ABC-type polar am 100.0 4.3E-41 9.3E-46 290.1 6.8 191 30-257 3-217 (240)
3 COG1196 Smc Chromosome segrega 100.0 7.7E-39 1.7E-43 337.0 17.5 209 5-261 946-1156(1163)
4 KOG0933|consensus 100.0 3.8E-38 8.3E-43 312.8 14.2 215 2-263 959-1173(1174)
5 COG1135 AbcC ABC-type metal io 100.0 3E-38 6.5E-43 284.6 7.4 185 61-256 21-222 (339)
6 COG2884 FtsE Predicted ATPase 100.0 9.9E-37 2.1E-41 258.4 8.1 193 30-256 2-217 (223)
7 COG3638 ABC-type phosphate/pho 100.0 5.3E-36 1.1E-40 261.4 6.2 200 29-255 3-227 (258)
8 COG4181 Predicted ABC-type tra 100.0 4E-35 8.7E-40 245.4 10.2 196 29-254 6-224 (228)
9 COG1125 OpuBA ABC-type proline 100.0 2.8E-34 6E-39 253.1 8.2 188 30-255 2-215 (309)
10 TIGR02169 SMC_prok_A chromosom 100.0 4.5E-33 9.8E-38 291.5 18.2 209 3-260 953-1163(1164)
11 COG1120 FepC ABC-type cobalami 100.0 1.4E-34 3E-39 258.1 5.3 183 59-255 15-218 (258)
12 COG1127 Ttg2A ABC-type transpo 100.0 7.6E-34 1.7E-38 248.4 8.6 194 28-256 7-226 (263)
13 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-33 3E-38 248.5 9.3 164 61-248 18-205 (248)
14 COG1124 DppF ABC-type dipeptid 100.0 5.7E-34 1.2E-38 249.7 2.1 192 30-254 4-220 (252)
15 COG3842 PotA ABC-type spermidi 100.0 2.7E-33 5.9E-38 259.5 1.8 187 29-255 5-216 (352)
16 COG3839 MalK ABC-type sugar tr 100.0 6.4E-33 1.4E-37 255.8 2.9 188 28-255 2-213 (338)
17 TIGR02314 ABC_MetN D-methionin 100.0 1E-31 2.2E-36 250.1 8.7 178 60-255 19-220 (343)
18 COG4175 ProV ABC-type proline/ 100.0 4E-31 8.7E-36 239.0 11.5 177 61-254 43-243 (386)
19 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.6E-32 2.1E-36 239.0 6.9 188 30-247 5-212 (254)
20 COG1118 CysA ABC-type sulfate/ 100.0 2.2E-31 4.8E-36 239.9 8.8 176 62-257 18-219 (345)
21 COG4598 HisP ABC-type histidin 100.0 1.1E-30 2.4E-35 220.4 11.6 202 29-254 6-230 (256)
22 KOG0964|consensus 100.0 8.5E-31 1.8E-35 259.9 12.6 211 2-260 950-1185(1200)
23 TIGR00960 3a0501s02 Type II (G 100.0 9.4E-31 2E-35 227.6 10.4 183 60-253 17-215 (216)
24 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.3E-30 2.8E-35 226.8 9.9 183 60-253 18-217 (218)
25 COG1122 CbiO ABC-type cobalt t 100.0 2.6E-31 5.6E-36 235.3 5.5 182 60-254 18-217 (235)
26 TIGR01186 proV glycine betaine 100.0 1.5E-30 3.3E-35 243.8 9.8 178 60-254 7-208 (363)
27 cd03261 ABC_Org_Solvent_Resist 100.0 2.1E-30 4.6E-35 228.2 9.2 184 60-254 14-215 (235)
28 PRK11650 ugpC glycerol-3-phosp 100.0 3.2E-31 6.9E-36 248.0 4.1 173 60-255 18-214 (356)
29 PRK11432 fbpC ferric transport 100.0 3E-31 6.4E-36 247.8 3.8 190 26-255 3-216 (351)
30 cd03235 ABC_Metallic_Cations A 100.0 2.9E-30 6.4E-35 224.0 9.5 179 60-253 13-209 (213)
31 PRK11022 dppD dipeptide transp 100.0 6.4E-31 1.4E-35 243.3 5.0 196 29-254 3-232 (326)
32 COG3840 ThiQ ABC-type thiamine 100.0 6.1E-30 1.3E-34 216.0 10.3 181 64-257 17-211 (231)
33 cd03225 ABC_cobalt_CbiO_domain 100.0 1.8E-30 3.9E-35 224.8 7.0 179 60-252 15-210 (211)
34 TIGR02211 LolD_lipo_ex lipopro 100.0 5.4E-30 1.2E-34 223.3 10.0 183 60-253 19-218 (221)
35 COG0444 DppD ABC-type dipeptid 100.0 1.2E-30 2.7E-35 236.9 6.1 176 62-254 21-232 (316)
36 TIGR02673 FtsE cell division A 100.0 4.3E-30 9.3E-35 222.9 8.8 182 60-252 16-213 (214)
37 PRK11153 metN DL-methionine tr 100.0 5E-30 1.1E-34 238.8 9.8 185 60-255 19-220 (343)
38 TIGR02315 ABC_phnC phosphonate 100.0 1.7E-29 3.7E-34 223.2 12.5 184 60-254 16-224 (243)
39 PRK11629 lolD lipoprotein tran 100.0 9.2E-30 2E-34 224.1 10.5 184 60-254 23-223 (233)
40 cd03292 ABC_FtsE_transporter F 100.0 5.7E-30 1.2E-34 222.0 9.0 183 60-253 15-213 (214)
41 cd03256 ABC_PhnC_transporter A 100.0 1.7E-29 3.7E-34 222.7 11.8 184 60-254 15-223 (241)
42 cd03259 ABC_Carb_Solutes_like 100.0 1.2E-30 2.5E-35 226.5 4.2 183 60-254 14-209 (213)
43 cd03226 ABC_cobalt_CbiO_domain 100.0 5.9E-30 1.3E-34 221.0 8.3 178 60-253 14-203 (205)
44 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.4E-29 5.3E-34 226.5 11.8 197 31-255 26-240 (269)
45 PRK10584 putative ABC transpor 100.0 1.9E-29 4.1E-34 221.1 10.7 183 61-254 25-224 (228)
46 TIGR03415 ABC_choXWV_ATP choli 100.0 1.7E-29 3.6E-34 238.1 11.0 183 60-255 38-244 (382)
47 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.7E-30 3.7E-35 229.1 3.7 185 60-255 15-211 (236)
48 TIGR03265 PhnT2 putative 2-ami 100.0 1.9E-30 4E-35 242.6 3.9 172 61-255 19-214 (353)
49 COG1117 PstB ABC-type phosphat 100.0 2.7E-30 5.8E-35 222.8 4.4 190 29-244 7-218 (253)
50 cd03214 ABC_Iron-Siderophores_ 100.0 1.3E-29 2.8E-34 215.2 8.5 153 60-254 13-176 (180)
51 PRK15079 oligopeptide ABC tran 100.0 2E-29 4.3E-34 233.8 10.5 176 61-254 36-240 (331)
52 cd03219 ABC_Mj1267_LivG_branch 100.0 5.7E-30 1.2E-34 225.3 6.4 182 60-254 14-221 (236)
53 PRK10908 cell division protein 100.0 2.9E-29 6.2E-34 219.2 10.4 183 60-253 16-214 (222)
54 TIGR02168 SMC_prok_B chromosom 100.0 4.9E-29 1.1E-33 260.4 14.0 202 7-260 964-1178(1179)
55 PRK13650 cbiO cobalt transport 100.0 3.5E-29 7.6E-34 226.7 11.0 182 60-255 21-219 (279)
56 PRK11308 dppF dipeptide transp 100.0 2.8E-29 6.1E-34 232.4 10.5 177 60-254 29-233 (327)
57 PRK11000 maltose/maltodextrin 100.0 2.7E-30 5.8E-35 242.8 3.7 184 60-255 17-213 (369)
58 cd03258 ABC_MetN_methionine_tr 100.0 1E-29 2.2E-34 223.4 6.9 185 60-255 19-220 (233)
59 PRK11831 putative ABC transpor 100.0 4.2E-30 9.2E-35 231.3 4.5 198 29-254 7-222 (269)
60 PRK10070 glycine betaine trans 100.0 3.6E-29 7.7E-34 237.2 11.0 192 29-254 28-243 (400)
61 TIGR03608 L_ocin_972_ABC putat 100.0 2E-29 4.2E-34 217.4 8.0 178 60-246 12-205 (206)
62 PRK13537 nodulation ABC transp 100.0 2.9E-30 6.3E-35 236.9 2.5 195 28-254 6-216 (306)
63 PRK09452 potA putrescine/sperm 100.0 3.2E-29 6.9E-34 235.9 9.5 188 29-256 14-225 (375)
64 PRK15093 antimicrobial peptide 100.0 1.2E-29 2.5E-34 235.1 6.2 195 30-254 4-237 (330)
65 cd03266 ABC_NatA_sodium_export 100.0 2.1E-29 4.5E-34 219.2 7.3 180 60-254 19-214 (218)
66 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-29 2.3E-34 224.5 5.5 185 60-255 16-221 (242)
67 COG1123 ATPase components of v 100.0 1.4E-29 2.9E-34 244.6 6.5 196 29-254 5-233 (539)
68 PRK11607 potG putrescine trans 100.0 6.1E-30 1.3E-34 241.0 3.9 186 29-254 19-228 (377)
69 TIGR01288 nodI ATP-binding ABC 100.0 4.1E-30 8.8E-35 235.3 2.6 180 60-254 18-213 (303)
70 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-28 2.5E-33 215.9 11.7 183 60-254 14-218 (227)
71 PRK09473 oppD oligopeptide tra 100.0 6.3E-29 1.4E-33 230.4 10.5 196 29-254 12-240 (330)
72 PRK13647 cbiO cobalt transport 100.0 4.7E-29 1E-33 225.3 9.4 185 60-255 19-217 (274)
73 PRK13637 cbiO cobalt transport 100.0 3.6E-29 7.9E-34 227.5 8.6 184 60-255 21-224 (287)
74 cd03263 ABC_subfamily_A The AB 100.0 2.7E-29 5.9E-34 218.8 7.4 180 60-254 16-210 (220)
75 cd03218 ABC_YhbG The ABC trans 100.0 7.9E-29 1.7E-33 217.5 10.1 184 60-254 14-211 (232)
76 cd03257 ABC_NikE_OppD_transpor 100.0 7.1E-29 1.5E-33 216.8 9.7 184 60-254 19-224 (228)
77 cd03293 ABC_NrtD_SsuB_transpor 100.0 6.3E-29 1.4E-33 216.8 9.3 179 60-254 18-212 (220)
78 TIGR03258 PhnT 2-aminoethylpho 100.0 4.9E-29 1.1E-33 233.7 9.2 173 60-255 19-218 (362)
79 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-29 2.6E-34 240.6 5.1 186 59-255 16-218 (402)
80 cd03265 ABC_DrrA DrrA is the A 100.0 2.6E-29 5.6E-34 219.2 6.6 184 60-254 14-210 (220)
81 cd03264 ABC_drug_resistance_li 100.0 5.3E-29 1.1E-33 215.8 8.2 179 60-254 14-207 (211)
82 PRK11264 putative amino-acid A 100.0 3E-29 6.5E-34 222.6 6.8 184 60-254 17-222 (250)
83 TIGR01188 drrA daunorubicin re 100.0 4.5E-29 9.9E-34 228.3 8.1 180 60-254 7-202 (302)
84 PRK13638 cbiO cobalt transport 100.0 1.9E-29 4.2E-34 227.1 5.4 183 60-254 15-214 (271)
85 TIGR02769 nickel_nikE nickel i 100.0 1.6E-28 3.4E-33 220.5 10.9 185 59-254 24-229 (265)
86 TIGR01978 sufC FeS assembly AT 100.0 3.7E-29 8.1E-34 220.8 6.7 184 60-254 14-223 (243)
87 PRK10895 lipopolysaccharide AB 100.0 2.4E-29 5.2E-34 222.3 5.4 182 60-254 17-215 (241)
88 PRK13548 hmuV hemin importer A 100.0 2.9E-29 6.2E-34 224.6 5.9 187 60-254 16-219 (258)
89 PRK13646 cbiO cobalt transport 100.0 1.4E-28 3.1E-33 223.4 10.5 185 60-255 21-225 (286)
90 PRK14273 phosphate ABC transpo 100.0 2.3E-29 5E-34 224.2 5.2 184 60-255 21-228 (254)
91 PRK13632 cbiO cobalt transport 100.0 1.9E-29 4E-34 227.4 4.6 183 59-255 22-221 (271)
92 cd03268 ABC_BcrA_bacitracin_re 100.0 6.3E-29 1.4E-33 214.9 7.6 176 60-254 14-204 (208)
93 PRK13651 cobalt transporter AT 100.0 1.5E-28 3.2E-33 225.5 10.5 188 61-254 22-243 (305)
94 cd03224 ABC_TM1139_LivF_branch 100.0 2.3E-29 5.1E-34 219.3 4.6 183 60-254 14-210 (222)
95 cd03301 ABC_MalK_N The N-termi 100.0 4.1E-29 8.9E-34 216.6 6.1 183 60-254 14-209 (213)
96 PRK09493 glnQ glutamine ABC tr 100.0 3.6E-29 7.8E-34 221.1 5.7 183 60-254 15-214 (240)
97 PRK13643 cbiO cobalt transport 100.0 1.6E-28 3.4E-33 223.4 10.0 185 60-255 20-223 (288)
98 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-28 3.1E-33 213.0 9.2 182 60-253 14-212 (213)
99 PRK13634 cbiO cobalt transport 100.0 1.8E-28 3.9E-33 223.2 9.9 184 61-255 22-225 (290)
100 cd03296 ABC_CysA_sulfate_impor 100.0 5.1E-29 1.1E-33 220.1 6.1 183 60-254 16-215 (239)
101 cd03269 ABC_putative_ATPase Th 100.0 7.9E-29 1.7E-33 214.6 7.1 181 60-254 14-206 (210)
102 PRK11231 fecE iron-dicitrate t 100.0 5.3E-29 1.2E-33 222.2 6.2 186 59-255 15-217 (255)
103 cd03245 ABCC_bacteriocin_expor 100.0 2.6E-28 5.6E-33 212.6 10.3 176 60-254 18-216 (220)
104 PRK14242 phosphate transporter 100.0 3.5E-29 7.6E-34 222.8 4.8 184 60-255 20-227 (253)
105 PRK13631 cbiO cobalt transport 100.0 2.7E-28 5.8E-33 225.3 10.7 209 28-255 20-255 (320)
106 PRK13536 nodulation factor exp 100.0 1.7E-29 3.8E-34 234.9 2.8 195 29-255 41-251 (340)
107 COG2274 SunT ABC-type bacterio 100.0 1.2E-28 2.5E-33 247.2 8.7 195 30-254 472-685 (709)
108 PRK14269 phosphate ABC transpo 100.0 9.2E-29 2E-33 219.5 7.1 181 60-254 16-219 (246)
109 COG1123 ATPase components of v 100.0 1.2E-28 2.7E-33 237.9 8.5 200 26-254 277-508 (539)
110 PRK11701 phnK phosphonate C-P 100.0 1.1E-28 2.4E-33 220.4 7.7 202 30-254 7-230 (258)
111 TIGR00972 3a0107s01c2 phosphat 100.0 1.6E-28 3.4E-33 218.0 8.4 183 60-254 15-221 (247)
112 PRK13635 cbiO cobalt transport 100.0 2.5E-28 5.4E-33 221.2 9.8 185 59-254 20-218 (279)
113 TIGR02982 heterocyst_DevA ABC 100.0 2.8E-28 6E-33 212.9 9.7 183 60-253 19-218 (220)
114 PRK10851 sulfate/thiosulfate t 100.0 9.6E-29 2.1E-33 231.0 7.1 184 60-255 16-216 (353)
115 COG4988 CydD ABC-type transpor 100.0 3.2E-28 6.8E-33 234.8 10.7 188 32-254 323-532 (559)
116 PRK10619 histidine/lysine/argi 100.0 8.2E-29 1.8E-33 221.2 6.1 184 60-254 19-230 (257)
117 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.5E-28 5.4E-33 216.1 9.0 184 60-254 15-214 (242)
118 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.3E-28 5E-33 211.8 8.6 179 64-254 16-207 (211)
119 PRK14267 phosphate ABC transpo 99.9 4.3E-29 9.4E-34 222.2 4.1 182 60-255 18-227 (253)
120 PRK09984 phosphonate/organopho 99.9 8.7E-29 1.9E-33 221.6 5.9 184 60-254 18-231 (262)
121 PRK13644 cbiO cobalt transport 99.9 2.2E-28 4.7E-33 220.9 8.3 183 60-255 16-214 (274)
122 PRK11614 livF leucine/isoleuci 99.9 3E-29 6.4E-34 221.2 2.6 181 59-254 18-215 (237)
123 PRK11247 ssuB aliphatic sulfon 99.9 2.9E-28 6.2E-33 218.6 8.9 189 28-254 11-212 (257)
124 PRK10575 iron-hydroxamate tran 99.9 6.1E-28 1.3E-32 216.7 10.4 181 60-254 25-226 (265)
125 PRK11124 artP arginine transpo 99.9 5.6E-28 1.2E-32 213.7 10.0 184 60-254 16-219 (242)
126 PRK10762 D-ribose transporter 99.9 8.6E-29 1.9E-33 240.6 5.3 196 29-254 4-219 (501)
127 PRK13641 cbiO cobalt transport 99.9 4.6E-28 9.9E-33 220.2 9.6 184 60-254 21-223 (287)
128 PRK11248 tauB taurine transpor 99.9 4.7E-28 1E-32 216.7 9.4 175 60-247 15-202 (255)
129 PRK13640 cbiO cobalt transport 99.9 6.1E-28 1.3E-32 218.9 10.3 182 60-255 21-222 (282)
130 TIGR02203 MsbA_lipidA lipid A 99.9 8.7E-28 1.9E-32 236.1 12.2 179 59-255 345-546 (571)
131 TIGR01184 ntrCD nitrate transp 99.9 2.8E-28 6.1E-33 214.6 7.8 177 63-254 2-193 (230)
132 COG1131 CcmA ABC-type multidru 99.9 3.7E-28 7.9E-33 221.9 8.8 188 31-256 6-217 (293)
133 TIGR02323 CP_lyasePhnK phospho 99.9 2.3E-28 5E-33 217.5 7.2 188 60-254 17-227 (253)
134 PRK13549 xylose transporter AT 99.9 1E-28 2.2E-33 240.4 5.2 196 29-254 5-221 (506)
135 TIGR03005 ectoine_ehuA ectoine 99.9 5.5E-28 1.2E-32 215.1 9.6 184 60-254 14-225 (252)
136 PRK10938 putative molybdenum t 99.9 2.9E-28 6.4E-33 236.1 8.5 174 60-254 17-213 (490)
137 PRK14247 phosphate ABC transpo 99.9 4.6E-28 9.9E-33 215.2 8.8 181 60-254 17-223 (250)
138 PRK13636 cbiO cobalt transport 99.9 5.2E-28 1.1E-32 219.4 9.3 183 60-254 20-220 (283)
139 TIGR02324 CP_lyasePhnL phospho 99.9 1E-27 2.2E-32 209.5 10.7 183 60-248 22-223 (224)
140 PRK11300 livG leucine/isoleuci 99.9 5.4E-28 1.2E-32 215.2 9.0 184 60-254 19-232 (255)
141 TIGR03873 F420-0_ABC_ATP propo 99.9 2.2E-28 4.8E-33 218.3 6.4 185 59-254 14-215 (256)
142 PRK10253 iron-enterobactin tra 99.9 1E-27 2.2E-32 215.3 10.7 185 59-254 20-222 (265)
143 cd03248 ABCC_TAP TAP, the Tran 99.9 7E-28 1.5E-32 210.8 9.4 182 60-253 28-225 (226)
144 PRK14250 phosphate ABC transpo 99.9 1.4E-27 3E-32 211.5 11.4 178 60-254 17-210 (241)
145 PRK09700 D-allose transporter 99.9 1.4E-28 3E-33 239.5 5.4 196 29-254 5-223 (510)
146 PRK13633 cobalt transporter AT 99.9 5.5E-28 1.2E-32 218.9 8.9 183 60-255 24-223 (280)
147 TIGR01166 cbiO cobalt transpor 99.9 4E-28 8.6E-33 207.3 7.3 169 59-237 5-189 (190)
148 PRK13648 cbiO cobalt transport 99.9 1.2E-27 2.6E-32 215.2 10.7 182 60-255 23-221 (269)
149 COG4987 CydC ABC-type transpor 99.9 1.4E-27 3.1E-32 228.0 11.7 192 29-254 336-550 (573)
150 PRK13649 cbiO cobalt transport 99.9 8.2E-28 1.8E-32 217.4 9.6 184 60-254 21-223 (280)
151 PRK15439 autoinducer 2 ABC tra 99.9 1.9E-28 4.1E-33 238.8 5.8 189 29-254 11-218 (510)
152 PRK11174 cysteine/glutathione 99.9 7E-28 1.5E-32 237.9 9.9 177 59-254 363-561 (588)
153 TIGR03269 met_CoM_red_A2 methy 99.9 4.5E-28 9.8E-33 236.4 8.2 189 60-254 14-247 (520)
154 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.3E-27 2.8E-32 209.8 10.3 187 30-254 23-220 (224)
155 PRK14261 phosphate ABC transpo 99.9 1E-28 2.3E-33 219.9 3.2 202 25-255 2-227 (253)
156 PRK11144 modC molybdate transp 99.9 4.1E-28 8.8E-33 226.7 7.3 174 64-255 16-208 (352)
157 PRK15134 microcin C ABC transp 99.9 1.3E-27 2.8E-32 233.8 11.1 184 60-254 23-235 (529)
158 PRK14259 phosphate ABC transpo 99.9 1.4E-28 3E-33 221.6 4.0 193 28-251 12-228 (269)
159 TIGR03522 GldA_ABC_ATP gliding 99.9 4.6E-28 1E-32 221.6 7.4 175 59-255 15-211 (301)
160 PRK09580 sufC cysteine desulfu 99.9 3.8E-28 8.2E-33 215.2 6.6 182 60-254 15-224 (248)
161 PRK15134 microcin C ABC transp 99.9 7.1E-28 1.5E-32 235.6 9.1 184 60-254 300-504 (529)
162 PRK11176 lipid transporter ATP 99.9 1.9E-27 4.1E-32 234.5 12.2 179 59-255 356-557 (582)
163 PRK13642 cbiO cobalt transport 99.9 9.5E-28 2.1E-32 217.0 9.2 181 60-254 21-218 (277)
164 PRK10744 pstB phosphate transp 99.9 9.6E-28 2.1E-32 214.8 9.1 184 60-255 27-234 (260)
165 PRK13652 cbiO cobalt transport 99.9 9.3E-28 2E-32 217.0 9.1 182 60-255 18-217 (277)
166 PRK10261 glutathione transport 99.9 9.6E-28 2.1E-32 239.1 10.1 176 61-254 339-542 (623)
167 PRK14248 phosphate ABC transpo 99.9 1.4E-28 3E-33 221.1 3.7 197 29-254 21-241 (268)
168 TIGR03410 urea_trans_UrtE urea 99.9 1.3E-27 2.9E-32 209.6 9.7 180 60-254 14-210 (230)
169 PRK14251 phosphate ABC transpo 99.9 1.6E-28 3.5E-33 218.2 3.9 184 60-255 18-225 (251)
170 cd03252 ABCC_Hemolysin The ABC 99.9 1.6E-27 3.4E-32 210.1 10.0 180 60-254 16-214 (237)
171 PRK13547 hmuV hemin importer A 99.9 6.9E-28 1.5E-32 217.8 7.7 188 60-254 15-233 (272)
172 PRK13639 cbiO cobalt transport 99.9 1.5E-27 3.2E-32 215.6 9.8 184 60-255 16-216 (275)
173 PRK14268 phosphate ABC transpo 99.9 7.4E-28 1.6E-32 215.3 7.8 183 60-254 26-231 (258)
174 PRK14241 phosphate transporter 99.9 1.6E-28 3.4E-33 219.5 3.4 178 60-247 18-220 (258)
175 PRK14245 phosphate ABC transpo 99.9 2E-27 4.4E-32 211.3 10.5 183 60-254 17-223 (250)
176 PRK10790 putative multidrug tr 99.9 2E-27 4.4E-32 234.9 11.6 178 59-256 354-554 (592)
177 PRK03695 vitamin B12-transport 99.9 2.5E-27 5.4E-32 211.0 10.7 187 61-254 11-211 (248)
178 COG4608 AppF ABC-type oligopep 99.9 4E-28 8.7E-33 216.3 5.5 172 29-254 4-188 (268)
179 PRK14274 phosphate ABC transpo 99.9 2.3E-28 4.9E-33 218.6 3.8 199 27-254 10-232 (259)
180 PRK14235 phosphate transporter 99.9 1.2E-27 2.7E-32 215.1 8.5 183 60-254 33-240 (267)
181 PRK10247 putative ABC transpor 99.9 1.4E-27 3.1E-32 209.4 8.6 182 60-254 21-217 (225)
182 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2E-27 4.3E-32 238.9 10.7 175 59-255 466-663 (686)
183 TIGR02770 nickel_nikD nickel i 99.9 1.2E-27 2.6E-32 210.4 7.9 181 62-254 2-204 (230)
184 PRK14255 phosphate ABC transpo 99.9 3.1E-28 6.6E-33 216.6 4.1 185 59-255 18-226 (252)
185 cd03267 ABC_NatA_like Similar 99.9 8.1E-28 1.8E-32 212.5 6.7 180 60-254 35-232 (236)
186 PRK10771 thiQ thiamine transpo 99.9 1.7E-27 3.6E-32 209.6 8.7 179 64-254 17-208 (232)
187 PRK14244 phosphate ABC transpo 99.9 6.6E-28 1.4E-32 214.5 6.2 183 60-254 19-226 (251)
188 TIGR03375 type_I_sec_LssB type 99.9 3.2E-27 7E-32 237.6 11.9 178 59-255 478-678 (694)
189 PRK10982 galactose/methyl gala 99.9 1E-27 2.2E-32 232.5 7.7 182 60-254 12-212 (491)
190 PRK11288 araG L-arabinose tran 99.9 5.2E-28 1.1E-32 235.1 5.6 182 60-254 18-218 (501)
191 cd03251 ABCC_MsbA MsbA is an e 99.9 3.3E-27 7.2E-32 207.4 10.1 180 60-254 16-214 (234)
192 PRK14270 phosphate ABC transpo 99.9 3E-28 6.4E-33 216.7 3.4 183 60-254 18-224 (251)
193 PRK14262 phosphate ABC transpo 99.9 6.2E-28 1.3E-32 214.4 5.3 185 59-255 16-224 (250)
194 COG4161 ArtP ABC-type arginine 99.9 3E-27 6.5E-32 196.8 9.0 178 61-254 17-219 (242)
195 TIGR01277 thiQ thiamine ABC tr 99.9 1.8E-27 3.9E-32 206.8 8.0 180 63-254 15-207 (213)
196 COG4619 ABC-type uncharacteriz 99.9 5.7E-27 1.2E-31 195.9 10.5 179 59-253 16-211 (223)
197 PRK13657 cyclic beta-1,2-gluca 99.9 5.9E-27 1.3E-31 231.6 12.6 179 59-256 348-549 (588)
198 PRK10419 nikE nickel transport 99.9 3.1E-27 6.6E-32 212.7 9.5 185 59-254 25-230 (268)
199 TIGR02142 modC_ABC molybdenum 99.9 1.4E-27 3.1E-32 223.1 7.5 179 64-254 15-210 (354)
200 TIGR03740 galliderm_ABC gallid 99.9 8.7E-28 1.9E-32 210.0 5.6 179 59-254 13-202 (223)
201 PRK14256 phosphate ABC transpo 99.9 2.2E-27 4.9E-32 211.2 8.3 184 60-255 18-226 (252)
202 PRK15112 antimicrobial peptide 99.9 2.1E-27 4.4E-32 213.6 8.1 181 60-254 27-228 (267)
203 PRK13645 cbiO cobalt transport 99.9 2.1E-27 4.6E-32 215.8 8.3 185 61-254 26-229 (289)
204 cd03231 ABC_CcmA_heme_exporter 99.9 3.5E-27 7.5E-32 203.6 9.0 169 60-246 14-197 (201)
205 cd03297 ABC_ModC_molybdenum_tr 99.9 3.1E-27 6.8E-32 205.3 8.7 172 64-254 16-210 (214)
206 cd03254 ABCC_Glucan_exporter_l 99.9 6.2E-27 1.3E-31 205.1 10.5 180 60-254 17-215 (229)
207 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4.8E-27 1E-31 207.1 9.8 180 60-254 17-215 (238)
208 TIGR02633 xylG D-xylose ABC tr 99.9 8.2E-28 1.8E-32 233.5 5.3 182 60-254 15-219 (500)
209 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 5.8E-27 1.3E-31 236.2 11.7 176 59-255 492-690 (710)
210 COG0411 LivG ABC-type branched 99.9 5.3E-28 1.2E-32 212.2 3.6 198 28-253 3-227 (250)
211 PRK14249 phosphate ABC transpo 99.9 5.9E-28 1.3E-32 214.8 3.8 184 60-255 18-225 (251)
212 cd03244 ABCC_MRP_domain2 Domai 99.9 7.4E-27 1.6E-31 203.6 10.7 175 60-254 18-215 (221)
213 PRK14272 phosphate ABC transpo 99.9 5.9E-28 1.3E-32 214.6 3.8 185 59-255 17-226 (252)
214 PRK09544 znuC high-affinity zi 99.9 1.2E-27 2.6E-32 213.8 5.7 163 60-247 18-194 (251)
215 PRK11160 cysteine/glutathione 99.9 9E-27 1.9E-31 230.0 12.5 177 60-255 354-552 (574)
216 PRK14253 phosphate ABC transpo 99.9 3.5E-27 7.5E-32 209.5 8.5 183 59-255 16-223 (249)
217 PRK09700 D-allose transporter 99.9 6.3E-27 1.4E-31 227.9 10.9 181 61-254 278-487 (510)
218 CHL00131 ycf16 sulfate ABC tra 99.9 3.6E-27 7.7E-32 209.6 8.2 182 60-254 21-230 (252)
219 PRK13538 cytochrome c biogenes 99.9 3E-27 6.5E-32 204.3 7.3 169 60-243 15-197 (204)
220 PRK14265 phosphate ABC transpo 99.9 1.2E-27 2.6E-32 216.1 4.5 192 29-247 20-233 (274)
221 PRK13549 xylose transporter AT 99.9 5.6E-27 1.2E-31 228.2 9.5 181 61-254 277-483 (506)
222 PRK14271 phosphate ABC transpo 99.9 1.2E-27 2.7E-32 216.3 4.5 196 29-254 21-240 (276)
223 PRK14260 phosphate ABC transpo 99.9 9.5E-28 2.1E-32 214.7 3.7 178 60-247 21-222 (259)
224 PRK14239 phosphate transporter 99.9 6.4E-27 1.4E-31 207.9 9.0 184 60-255 19-226 (252)
225 PRK14240 phosphate transporter 99.9 7E-27 1.5E-31 207.6 9.2 184 60-255 17-224 (250)
226 PRK13539 cytochrome c biogenes 99.9 1.4E-27 3.1E-32 206.9 4.6 169 60-247 16-198 (207)
227 PRK13543 cytochrome c biogenes 99.9 1E-27 2.3E-32 208.7 3.7 174 60-247 25-210 (214)
228 PRK13540 cytochrome c biogenes 99.9 5.2E-27 1.1E-31 202.2 7.9 168 60-244 15-196 (200)
229 PRK14238 phosphate transporter 99.9 2.1E-27 4.6E-32 214.1 5.5 197 29-254 24-244 (271)
230 PRK10261 glutathione transport 99.9 8.1E-27 1.8E-31 232.4 10.2 201 28-254 11-247 (623)
231 PRK14254 phosphate ABC transpo 99.9 4E-27 8.8E-32 213.9 7.2 183 60-254 53-258 (285)
232 TIGR01193 bacteriocin_ABC ABC- 99.9 1.3E-26 2.9E-31 233.7 11.5 178 59-255 487-687 (708)
233 cd03247 ABCC_cytochrome_bd The 99.9 9E-27 2E-31 197.2 8.6 151 60-254 16-174 (178)
234 TIGR03269 met_CoM_red_A2 methy 99.9 9.1E-27 2E-31 227.3 9.9 187 60-254 298-506 (520)
235 TIGR02868 CydC thiol reductant 99.9 4.4E-27 9.6E-32 229.6 7.6 158 60-235 349-529 (529)
236 cd03300 ABC_PotA_N PotA is an 99.9 5.4E-27 1.2E-31 206.5 7.4 183 60-254 14-209 (232)
237 cd03246 ABCC_Protease_Secretio 99.9 6E-27 1.3E-31 197.6 7.3 148 60-253 16-172 (173)
238 TIGR02633 xylG D-xylose ABC tr 99.9 1E-26 2.2E-31 225.8 10.0 182 60-254 274-481 (500)
239 COG1137 YhbG ABC-type (unclass 99.9 1.5E-27 3.3E-32 204.0 3.6 197 28-254 3-217 (243)
240 PRK10938 putative molybdenum t 99.9 5.5E-27 1.2E-31 227.2 8.0 184 60-254 274-481 (490)
241 TIGR02204 MsbA_rel ABC transpo 99.9 2.2E-26 4.8E-31 226.5 12.3 178 59-255 353-553 (576)
242 cd03238 ABC_UvrA The excision 99.9 1.7E-26 3.6E-31 196.5 9.9 147 59-252 8-164 (176)
243 PRK14237 phosphate transporter 99.9 8.5E-27 1.8E-31 209.6 8.5 184 59-254 33-240 (267)
244 cd03253 ABCC_ATM1_transporter 99.9 1.2E-26 2.7E-31 204.1 9.1 180 60-254 15-213 (236)
245 COG4559 ABC-type hemin transpo 99.9 4.7E-26 1E-30 196.5 12.4 188 59-255 14-220 (259)
246 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.9E-26 4.2E-31 208.8 10.6 176 59-254 17-214 (275)
247 PRK10418 nikD nickel transport 99.9 1.9E-26 4.1E-31 205.7 10.4 182 60-254 17-219 (254)
248 cd03234 ABCG_White The White s 99.9 1.1E-26 2.4E-31 203.5 8.7 179 59-254 20-222 (226)
249 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.1E-26 4.4E-31 199.2 10.0 166 60-254 22-201 (207)
250 PRK14275 phosphate ABC transpo 99.9 1.5E-26 3.3E-31 210.2 9.5 183 60-254 53-259 (286)
251 cd03217 ABC_FeS_Assembly ABC-t 99.9 9.4E-27 2E-31 200.9 7.8 156 60-255 14-184 (200)
252 TIGR02857 CydD thiol reductant 99.9 1.5E-26 3.2E-31 225.9 10.1 170 60-246 336-528 (529)
253 PRK11288 araG L-arabinose tran 99.9 1.7E-26 3.8E-31 224.5 10.5 182 60-254 267-474 (501)
254 KOG0057|consensus 99.9 1.9E-26 4E-31 220.6 10.1 182 58-258 364-567 (591)
255 PRK15439 autoinducer 2 ABC tra 99.9 1.9E-26 4.2E-31 224.7 10.4 182 61-255 278-482 (510)
256 PRK14243 phosphate transporter 99.9 2E-26 4.3E-31 206.9 9.7 178 60-247 24-223 (264)
257 PRK15056 manganese/iron transp 99.9 2.1E-26 4.6E-31 207.6 9.6 181 60-254 21-219 (272)
258 COG1132 MdlB ABC-type multidru 99.9 5.1E-26 1.1E-30 224.1 13.0 178 59-253 342-540 (567)
259 PRK14246 phosphate ABC transpo 99.9 9.8E-27 2.1E-31 208.4 7.1 200 30-255 11-231 (257)
260 PRK14263 phosphate ABC transpo 99.9 2.6E-26 5.7E-31 206.0 9.7 178 60-247 22-221 (261)
261 TIGR00958 3a01208 Conjugate Tr 99.9 3.7E-26 8E-31 230.8 11.7 175 59-254 494-691 (711)
262 PRK10762 D-ribose transporter 99.9 2.3E-26 5.1E-31 223.5 9.7 181 61-254 267-473 (501)
263 KOG0055|consensus 99.9 1.6E-26 3.5E-31 237.8 8.9 202 26-256 347-567 (1228)
264 PRK14236 phosphate transporter 99.9 2E-26 4.2E-31 207.8 8.4 184 60-255 39-246 (272)
265 cd03216 ABC_Carb_Monos_I This 99.9 3.1E-26 6.7E-31 191.9 9.0 137 60-254 14-160 (163)
266 PRK10522 multidrug transporter 99.9 3.7E-26 8E-31 224.3 10.9 174 60-255 337-528 (547)
267 PRK10789 putative multidrug tr 99.9 5.6E-26 1.2E-30 224.1 12.0 178 59-255 328-528 (569)
268 cd03299 ABC_ModC_like Archeal 99.9 3.4E-26 7.3E-31 201.9 9.3 181 61-254 14-208 (235)
269 cd03230 ABC_DR_subfamily_A Thi 99.9 1.2E-26 2.5E-31 195.8 6.1 147 60-253 14-172 (173)
270 PRK14257 phosphate ABC transpo 99.9 1.8E-26 3.9E-31 213.9 7.9 183 60-254 96-302 (329)
271 TIGR01189 ccmA heme ABC export 99.9 1.5E-26 3.2E-31 198.9 6.6 161 60-236 14-188 (198)
272 COG4172 ABC-type uncharacteriz 99.9 1.8E-26 3.9E-31 214.4 7.5 197 28-254 5-236 (534)
273 COG4555 NatA ABC-type Na+ tran 99.9 3.1E-26 6.7E-31 196.2 8.3 192 30-254 2-211 (245)
274 TIGR01846 type_I_sec_HlyB type 99.9 6.5E-26 1.4E-30 228.2 12.1 178 59-255 470-670 (694)
275 cd03229 ABC_Class3 This class 99.9 2E-26 4.4E-31 195.3 7.1 151 60-252 14-177 (178)
276 PRK10982 galactose/methyl gala 99.9 5.5E-26 1.2E-30 220.3 10.9 181 61-254 263-469 (491)
277 COG4604 CeuD ABC-type enteroch 99.9 4.7E-26 1E-30 194.6 9.1 196 30-254 2-214 (252)
278 TIGR00968 3a0106s01 sulfate AB 99.9 1.7E-26 3.8E-31 204.0 6.7 183 60-255 14-210 (237)
279 cd03278 ABC_SMC_barmotin Barmo 99.9 2.7E-26 5.9E-31 198.2 7.7 176 62-255 13-197 (197)
280 KOG0058|consensus 99.9 1.3E-26 2.9E-31 227.7 6.4 203 25-256 461-682 (716)
281 cd03228 ABCC_MRP_Like The MRP 99.9 4.6E-26 9.9E-31 191.9 8.7 147 60-252 16-170 (171)
282 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.1E-26 8.8E-31 203.4 8.8 106 152-257 126-251 (251)
283 cd03232 ABC_PDR_domain2 The pl 99.9 1E-25 2.2E-30 193.2 10.9 152 60-254 21-188 (192)
284 COG4525 TauB ABC-type taurine 99.9 2.5E-26 5.3E-31 196.2 6.8 173 60-258 19-215 (259)
285 PRK13541 cytochrome c biogenes 99.9 2.9E-26 6.3E-31 196.8 7.1 169 59-244 14-192 (195)
286 COG0410 LivF ABC-type branched 99.9 2E-26 4.4E-31 200.8 6.0 200 28-257 2-218 (237)
287 KOG0996|consensus 99.9 2.5E-25 5.4E-30 224.8 14.5 209 4-260 1074-1283(1293)
288 cd03290 ABCC_SUR1_N The SUR do 99.9 6.3E-26 1.4E-30 197.6 8.8 176 60-252 15-217 (218)
289 cd03237 ABC_RNaseL_inhibitor_d 99.9 7.3E-26 1.6E-30 201.8 9.3 162 63-247 11-189 (246)
290 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.6E-25 3.4E-30 220.4 12.6 177 60-254 356-548 (555)
291 cd03250 ABCC_MRP_domain1 Domai 99.9 3.6E-26 7.8E-31 197.2 7.1 168 60-252 19-203 (204)
292 cd03215 ABC_Carb_Monos_II This 99.9 8.2E-26 1.8E-30 192.1 9.1 152 61-253 15-181 (182)
293 TIGR01842 type_I_sec_PrtD type 99.9 1.4E-25 3E-30 220.1 11.9 181 59-254 331-531 (544)
294 cd03288 ABCC_SUR2 The SUR doma 99.9 4.5E-26 9.7E-31 203.8 7.7 180 60-255 35-233 (257)
295 cd03233 ABC_PDR_domain1 The pl 99.9 9E-27 1.9E-31 201.4 3.0 177 31-254 5-198 (202)
296 PTZ00265 multidrug resistance 99.9 4.5E-26 9.8E-31 244.2 8.9 173 60-251 1182-1433(1466)
297 PRK10535 macrolide transporter 99.9 2.4E-26 5.2E-31 230.0 6.3 197 29-255 4-222 (648)
298 PRK14264 phosphate ABC transpo 99.9 1.2E-25 2.6E-30 206.2 10.0 184 60-254 59-278 (305)
299 TIGR03771 anch_rpt_ABC anchore 99.9 1.7E-25 3.7E-30 196.1 10.2 172 67-254 1-190 (223)
300 COG1129 MglA ABC-type sugar tr 99.9 3E-26 6.5E-31 220.0 5.3 199 28-254 7-223 (500)
301 PRK14266 phosphate ABC transpo 99.9 1.4E-25 3.1E-30 199.2 9.2 184 60-255 17-224 (250)
302 PRK14252 phosphate ABC transpo 99.9 1.9E-25 4.2E-30 200.4 10.1 185 60-255 30-239 (265)
303 TIGR01192 chvA glucan exporter 99.9 3.8E-25 8.2E-30 218.9 12.9 180 60-254 349-547 (585)
304 cd03223 ABCD_peroxisomal_ALDP 99.9 9.7E-26 2.1E-30 189.4 7.2 138 60-247 15-160 (166)
305 PLN03232 ABC transporter C fam 99.9 8.3E-26 1.8E-30 243.1 8.3 175 60-254 1250-1447(1495)
306 PRK13546 teichoic acids export 99.9 2.1E-25 4.6E-30 200.8 9.4 174 59-254 37-221 (264)
307 PRK15064 ABC transporter ATP-b 99.9 7E-26 1.5E-30 221.6 6.7 168 60-254 333-513 (530)
308 PRK11819 putative ABC transpor 99.9 3.2E-26 6.8E-31 225.4 4.1 94 152-254 144-238 (556)
309 COG4172 ABC-type uncharacteriz 99.9 2E-25 4.2E-30 207.5 9.0 204 26-254 273-505 (534)
310 PRK14258 phosphate ABC transpo 99.9 1.6E-25 3.5E-30 200.6 8.1 180 60-251 21-226 (261)
311 cd03236 ABC_RNaseL_inhibitor_d 99.9 3.4E-25 7.3E-30 198.6 10.0 173 61-247 16-212 (255)
312 PLN03130 ABC transporter C fam 99.9 1.1E-25 2.4E-30 243.1 8.0 175 60-254 1253-1450(1622)
313 PRK15064 ABC transporter ATP-b 99.9 6.1E-26 1.3E-30 222.0 5.0 96 152-255 134-231 (530)
314 PRK10636 putative ABC transpor 99.9 4.4E-26 9.4E-31 227.8 4.0 188 59-255 14-225 (638)
315 PRK13545 tagH teichoic acids e 99.9 3.1E-25 6.8E-30 215.0 9.3 173 60-254 38-221 (549)
316 cd03213 ABCG_EPDR ABCG transpo 99.9 7.9E-25 1.7E-29 188.1 10.8 153 60-254 23-190 (194)
317 PRK15177 Vi polysaccharide exp 99.9 6.4E-25 1.4E-29 191.5 9.8 169 61-254 2-181 (213)
318 PTZ00243 ABC transporter; Prov 99.9 2.3E-25 4.9E-30 240.2 8.3 190 30-254 1309-1522(1560)
319 TIGR01187 potA spermidine/putr 99.9 5.8E-25 1.3E-29 203.4 8.3 166 77-254 7-179 (325)
320 TIGR01257 rim_protein retinal- 99.9 8.4E-25 1.8E-29 237.5 10.6 182 59-255 943-1139(2272)
321 PRK10636 putative ABC transpor 99.9 1.1E-24 2.3E-29 217.8 10.6 172 59-255 325-506 (638)
322 TIGR00957 MRP_assoc_pro multi 99.9 4.1E-25 8.8E-30 238.2 8.0 175 60-254 1300-1497(1522)
323 PRK13409 putative ATPase RIL; 99.9 2.2E-25 4.7E-30 220.8 5.3 161 62-247 355-527 (590)
324 PLN03073 ABC transporter F fam 99.9 1.4E-24 3.1E-29 219.0 11.0 97 152-256 323-421 (718)
325 PRK11147 ABC transporter ATPas 99.9 1.5E-25 3.2E-30 223.8 3.7 95 151-255 137-232 (635)
326 COG4778 PhnL ABC-type phosphon 99.9 1E-24 2.2E-29 182.8 7.3 176 62-248 27-226 (235)
327 KOG0055|consensus 99.9 9.8E-25 2.1E-29 224.8 8.3 202 25-255 983-1203(1228)
328 KOG0018|consensus 99.9 1.2E-23 2.5E-28 211.5 15.7 204 6-262 934-1140(1141)
329 PTZ00265 multidrug resistance 99.9 3E-24 6.6E-29 230.2 12.3 180 60-252 399-655 (1466)
330 cd03270 ABC_UvrA_I The excisio 99.9 1.4E-23 3.1E-28 184.7 14.3 90 155-247 119-211 (226)
331 TIGR01257 rim_protein retinal- 99.9 6.7E-25 1.4E-29 238.2 6.8 190 29-255 1937-2149(2272)
332 PLN03211 ABC transporter G-25; 99.9 9.2E-25 2E-29 218.8 7.0 178 59-254 81-285 (659)
333 PRK11147 ABC transporter ATPas 99.9 8.5E-25 1.8E-29 218.4 6.6 172 59-254 332-516 (635)
334 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2.6E-24 5.6E-29 176.9 8.1 121 60-252 14-143 (144)
335 COG4148 ModC ABC-type molybdat 99.9 5.2E-25 1.1E-29 196.6 4.0 176 64-256 16-209 (352)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 4.3E-24 9.4E-29 210.0 10.5 172 59-254 335-519 (552)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.3E-24 7.1E-29 210.9 9.4 94 153-255 143-237 (552)
338 cd03222 ABC_RNaseL_inhibitor T 99.9 1.6E-24 3.4E-29 184.5 6.2 72 173-248 72-146 (177)
339 PLN03073 ABC transporter F fam 99.9 6.2E-24 1.3E-28 214.4 11.5 170 60-254 523-702 (718)
340 TIGR01271 CFTR_protein cystic 99.9 4.1E-24 8.9E-29 230.0 10.6 176 59-254 1232-1429(1490)
341 cd03291 ABCC_CFTR1 The CFTR su 99.9 8.5E-24 1.8E-28 192.2 9.9 168 59-255 50-237 (282)
342 TIGR00955 3a01204 The Eye Pigm 99.9 7.8E-24 1.7E-28 210.9 10.4 179 59-254 38-245 (617)
343 PRK13409 putative ATPase RIL; 99.9 1.2E-23 2.7E-28 208.3 11.7 172 60-246 88-283 (590)
344 PRK11819 putative ABC transpor 99.9 1.3E-23 2.9E-28 206.8 11.4 172 60-255 338-522 (556)
345 TIGR00954 3a01203 Peroxysomal 99.9 1.8E-23 3.9E-28 209.7 9.1 168 59-247 465-651 (659)
346 COG0488 Uup ATPase components 99.9 4.9E-23 1.1E-27 201.0 11.7 96 152-256 134-230 (530)
347 COG1119 ModF ABC-type molybden 99.9 1.5E-23 3.3E-28 184.3 7.2 201 24-254 26-251 (257)
348 COG4107 PhnK ABC-type phosphon 99.9 5.4E-23 1.2E-27 173.2 10.2 196 29-253 6-229 (258)
349 COG4152 ABC-type uncharacteriz 99.9 1.6E-23 3.5E-28 184.1 6.3 185 30-256 3-210 (300)
350 COG4618 ArpD ABC-type protease 99.9 6.2E-23 1.3E-27 195.1 10.7 177 58-255 348-550 (580)
351 COG3845 ABC-type uncharacteriz 99.9 5.6E-23 1.2E-27 195.0 10.4 180 61-253 19-217 (501)
352 cd00267 ABC_ATPase ABC (ATP-bi 99.9 4.1E-23 8.9E-28 171.2 7.9 134 60-252 13-156 (157)
353 COG1101 PhnK ABC-type uncharac 99.9 1.2E-22 2.7E-27 175.7 10.1 185 57-254 17-227 (263)
354 PLN03140 ABC transporter G fam 99.9 7.1E-23 1.5E-27 219.3 10.1 178 59-253 893-1098(1470)
355 COG4133 CcmA ABC-type transpor 99.9 1.7E-22 3.8E-27 171.4 10.2 167 58-239 14-194 (209)
356 COG0396 sufC Cysteine desulfur 99.9 1E-22 2.2E-27 177.6 8.6 185 59-254 17-223 (251)
357 TIGR00956 3a01205 Pleiotropic 99.9 6.3E-23 1.4E-27 219.5 7.9 176 59-252 776-979 (1394)
358 cd03271 ABC_UvrA_II The excisi 99.9 2.7E-22 5.8E-27 180.4 9.7 90 154-246 150-243 (261)
359 PLN03232 ABC transporter C fam 99.9 1.6E-22 3.5E-27 217.9 9.6 165 59-255 630-818 (1495)
360 TIGR00956 3a01205 Pleiotropic 99.9 1.8E-22 3.9E-27 216.0 7.6 181 59-254 74-289 (1394)
361 PLN03130 ABC transporter C fam 99.9 6.9E-22 1.5E-26 213.9 10.3 164 59-255 630-818 (1622)
362 KOG0056|consensus 99.9 2.1E-22 4.5E-27 190.9 5.2 182 58-254 550-750 (790)
363 cd03274 ABC_SMC4_euk Eukaryoti 99.9 7.4E-22 1.6E-26 172.4 8.1 102 154-255 109-210 (212)
364 TIGR00957 MRP_assoc_pro multi 99.8 7.3E-22 1.6E-26 213.1 6.9 170 60-254 652-839 (1522)
365 TIGR01271 CFTR_protein cystic 99.8 1.7E-21 3.7E-26 209.9 8.2 169 60-254 440-625 (1490)
366 COG5265 ATM1 ABC-type transpor 99.8 8.8E-21 1.9E-25 177.3 8.6 181 57-254 274-475 (497)
367 PTZ00243 ABC transporter; Prov 99.8 5.1E-21 1.1E-25 206.7 7.7 171 59-254 673-859 (1560)
368 PLN03140 ABC transporter G fam 99.8 3.7E-21 8E-26 206.2 6.0 179 59-254 178-416 (1470)
369 COG4674 Uncharacterized ABC-ty 99.8 9.3E-21 2E-25 162.0 6.8 171 62-245 21-217 (249)
370 COG4586 ABC-type uncharacteriz 99.8 1.8E-20 3.8E-25 167.2 8.3 171 62-254 40-235 (325)
371 COG4136 ABC-type uncharacteriz 99.8 7.9E-21 1.7E-25 156.7 5.6 170 59-249 15-209 (213)
372 COG4167 SapF ABC-type antimicr 99.8 2.3E-20 5E-25 158.4 8.2 205 27-253 2-227 (267)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.4E-19 3.1E-24 159.8 12.3 92 165-256 151-242 (243)
374 COG1134 TagH ABC-type polysacc 99.8 3.2E-20 6.8E-25 163.3 8.1 175 60-257 41-228 (249)
375 COG0488 Uup ATPase components 99.8 1.2E-20 2.7E-25 184.2 6.1 165 59-247 335-509 (530)
376 KOG0061|consensus 99.8 1.7E-20 3.7E-25 186.6 6.9 177 59-252 43-247 (613)
377 PF02463 SMC_N: RecF/RecN/SMC 99.8 9.7E-20 2.1E-24 158.6 10.2 85 171-255 135-220 (220)
378 cd03279 ABC_sbcCD SbcCD and ot 99.8 8.9E-20 1.9E-24 158.9 7.7 93 160-254 111-212 (213)
379 PRK03918 chromosome segregatio 99.8 1.6E-17 3.5E-22 171.1 20.0 97 163-259 779-878 (880)
380 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.6E-18 3.4E-23 154.4 10.8 94 165-258 148-244 (247)
381 PF00005 ABC_tran: ABC transpo 99.8 1.1E-19 2.4E-24 146.4 2.5 122 63-205 2-137 (137)
382 cd03276 ABC_SMC6_euk Eukaryoti 99.8 2E-18 4.4E-23 149.2 9.1 84 163-246 100-187 (198)
383 KOG0054|consensus 99.7 1.5E-18 3.3E-23 182.4 8.1 174 59-254 1153-1351(1381)
384 KOG0054|consensus 99.7 2.6E-18 5.6E-23 180.7 9.5 166 61-255 536-721 (1381)
385 COG4615 PvdE ABC-type sideroph 99.7 3.4E-18 7.3E-23 159.1 8.7 171 64-254 341-526 (546)
386 PRK00635 excinuclease ABC subu 99.7 5.9E-18 1.3E-22 181.9 11.1 91 156-247 792-884 (1809)
387 PHA02562 46 endonuclease subun 99.7 1.7E-16 3.7E-21 155.9 19.0 93 164-257 460-559 (562)
388 TIGR00630 uvra excinuclease AB 99.7 2E-17 4.3E-22 170.5 12.0 90 156-246 811-902 (924)
389 cd03277 ABC_SMC5_euk Eukaryoti 99.7 9.9E-19 2.1E-23 152.9 1.4 89 165-253 119-211 (213)
390 PRK00349 uvrA excinuclease ABC 99.7 1.1E-17 2.3E-22 172.7 8.9 87 156-246 813-904 (943)
391 KOG0059|consensus 99.7 1.4E-17 3E-22 172.0 8.7 194 28-257 563-779 (885)
392 KOG0927|consensus 99.7 8.2E-17 1.8E-21 154.5 12.4 184 58-251 87-296 (614)
393 COG1245 Predicted ATPase, RNas 99.7 1.1E-17 2.3E-22 158.1 6.2 97 154-254 437-536 (591)
394 KOG0062|consensus 99.7 1.2E-16 2.6E-21 152.6 11.5 87 154-246 179-267 (582)
395 cd03240 ABC_Rad50 The catalyti 99.7 7.2E-17 1.6E-21 140.1 9.2 82 167-248 110-196 (204)
396 PRK01156 chromosome segregatio 99.7 1.4E-15 3E-20 157.4 19.9 93 167-259 796-894 (895)
397 cd03241 ABC_RecN RecN ATPase i 99.7 1.5E-16 3.3E-21 143.9 11.2 92 170-261 168-260 (276)
398 cd03239 ABC_SMC_head The struc 99.7 2E-16 4.4E-21 134.6 10.8 82 173-254 95-177 (178)
399 COG1129 MglA ABC-type sugar tr 99.7 7.6E-17 1.7E-21 155.3 8.6 180 62-254 275-479 (500)
400 COG4138 BtuD ABC-type cobalami 99.7 2.5E-17 5.4E-22 139.1 3.1 178 65-254 18-210 (248)
401 TIGR00630 uvra excinuclease AB 99.6 5.2E-16 1.1E-20 160.0 11.0 88 157-247 471-561 (924)
402 KOG0927|consensus 99.6 3E-16 6.6E-21 150.6 8.1 91 150-246 486-578 (614)
403 TIGR00634 recN DNA repair prot 99.6 7.5E-15 1.6E-19 145.2 17.9 86 164-249 431-517 (563)
404 COG4178 ABC-type uncharacteriz 99.6 5.9E-16 1.3E-20 151.9 9.7 162 59-247 406-586 (604)
405 COG1245 Predicted ATPase, RNas 99.6 1E-15 2.3E-20 144.6 10.6 89 152-244 193-283 (591)
406 PRK00349 uvrA excinuclease ABC 99.6 8.9E-16 1.9E-20 158.6 10.5 88 156-246 472-562 (943)
407 PRK10869 recombination and rep 99.6 1.3E-14 2.8E-19 143.1 18.1 78 171-248 429-506 (553)
408 PRK02224 chromosome segregatio 99.6 1.2E-14 2.5E-19 150.2 18.5 128 125-258 739-879 (880)
409 KOG0062|consensus 99.6 5E-15 1.1E-19 141.6 11.6 90 157-254 466-557 (582)
410 PRK00635 excinuclease ABC subu 99.6 3.7E-15 8E-20 160.7 10.8 87 157-247 460-550 (1809)
411 cd03280 ABC_MutS2 MutS2 homolo 99.6 5.4E-15 1.2E-19 127.6 8.7 85 163-254 82-168 (200)
412 KOG0065|consensus 99.6 3.9E-16 8.4E-21 162.1 1.7 175 58-246 803-1003(1391)
413 TIGR00606 rad50 rad50. This fa 99.6 1.4E-13 3.1E-18 147.6 20.5 91 167-261 1194-1303(1311)
414 KOG0066|consensus 99.6 5.8E-15 1.3E-19 139.2 7.0 93 159-258 690-784 (807)
415 COG4170 SapD ABC-type antimicr 99.6 5E-16 1.1E-20 134.7 -0.1 167 64-244 25-229 (330)
416 cd03227 ABC_Class2 ABC-type Cl 99.5 2.1E-14 4.5E-19 120.1 9.0 78 172-249 77-155 (162)
417 COG0419 SbcC ATPase involved i 99.5 4.1E-13 8.9E-18 139.5 17.1 92 167-258 810-906 (908)
418 cd03285 ABC_MSH2_euk MutS2 hom 99.4 5.7E-13 1.2E-17 117.3 9.2 138 59-246 17-164 (222)
419 COG2401 ABC-type ATPase fused 99.4 3.9E-13 8.5E-18 126.3 8.4 173 58-247 395-582 (593)
420 COG0178 UvrA Excinuclease ATPa 99.4 5.1E-13 1.1E-17 133.5 8.0 91 156-247 805-897 (935)
421 TIGR00618 sbcc exonuclease Sbc 99.4 1.3E-12 2.8E-17 137.5 10.2 86 161-246 939-1032(1042)
422 KOG0060|consensus 99.4 7.3E-13 1.6E-17 128.4 7.2 184 58-260 447-651 (659)
423 PRK10246 exonuclease subunit S 99.4 4.1E-12 8.9E-17 133.7 13.4 97 166-262 943-1046(1047)
424 cd03243 ABC_MutS_homologs The 99.3 2.3E-12 4.9E-17 111.3 7.2 74 168-246 87-162 (202)
425 COG3845 ABC-type uncharacteriz 99.3 4.3E-12 9.4E-17 121.2 7.7 182 61-254 273-481 (501)
426 cd03282 ABC_MSH4_euk MutS4 hom 99.3 1.2E-11 2.7E-16 107.5 8.8 136 58-242 15-158 (204)
427 KOG0066|consensus 99.3 1E-11 2.2E-16 117.5 8.2 88 153-246 392-481 (807)
428 KOG0063|consensus 99.3 1.8E-12 3.9E-17 122.1 3.0 89 154-246 438-529 (592)
429 cd03242 ABC_RecF RecF is a rec 99.2 3.5E-11 7.7E-16 108.6 8.0 80 169-253 180-268 (270)
430 COG0178 UvrA Excinuclease ATPa 99.2 8.7E-11 1.9E-15 117.8 9.3 90 156-247 464-555 (935)
431 cd03283 ABC_MutS-like MutS-lik 99.1 7.4E-10 1.6E-14 95.9 10.3 49 193-241 104-154 (199)
432 KOG0064|consensus 99.1 9.1E-11 2E-15 113.1 4.2 72 170-247 610-681 (728)
433 PRK00064 recF recombination pr 99.0 6E-10 1.3E-14 104.8 8.6 83 168-254 269-359 (361)
434 cd03284 ABC_MutS1 MutS1 homolo 99.0 2.7E-10 5.8E-15 99.9 5.7 71 171-244 84-162 (216)
435 KOG2355|consensus 99.0 2.6E-10 5.5E-15 99.0 4.8 80 169-254 144-226 (291)
436 PF13304 AAA_21: AAA domain; P 99.0 2.2E-09 4.7E-14 91.4 9.4 72 165-238 229-302 (303)
437 TIGR03185 DNA_S_dndD DNA sulfu 99.0 1.9E-08 4E-13 101.4 16.4 68 168-238 547-617 (650)
438 KOG0063|consensus 98.9 2.8E-09 6.1E-14 100.9 7.3 91 153-247 194-289 (592)
439 KOG0065|consensus 98.9 4.1E-10 8.9E-15 117.9 1.4 179 60-253 129-339 (1391)
440 TIGR01069 mutS2 MutS2 family p 98.9 4E-09 8.7E-14 107.9 8.6 69 168-241 381-451 (771)
441 COG3910 Predicted ATPase [Gene 98.9 6E-09 1.3E-13 89.3 8.2 79 165-248 122-202 (233)
442 smart00534 MUTSac ATPase domai 98.9 4.9E-09 1.1E-13 89.5 6.9 81 159-244 48-131 (185)
443 TIGR00611 recf recF protein. A 98.9 5.5E-09 1.2E-13 98.5 7.6 66 171-238 274-344 (365)
444 TIGR02680 conserved hypothetic 98.8 7.9E-09 1.7E-13 111.5 8.2 66 167-234 1242-1315(1353)
445 PF13558 SbcCD_C: Putative exo 98.8 1.3E-08 2.8E-13 77.4 5.8 56 166-221 26-90 (90)
446 COG0497 RecN ATPase involved i 98.8 4.1E-08 8.8E-13 96.1 10.7 78 171-248 430-507 (557)
447 PRK08533 flagellar accessory p 98.5 4.4E-07 9.4E-12 80.3 8.8 66 172-237 95-164 (230)
448 PRK14079 recF recombination pr 98.5 3.5E-07 7.6E-12 85.7 8.1 76 171-253 262-342 (349)
449 cd03287 ABC_MSH3_euk MutS3 hom 98.5 2.3E-07 5.1E-12 81.8 6.0 51 192-242 108-161 (222)
450 PF13175 AAA_15: AAA ATPase do 98.4 3.3E-07 7.2E-12 86.0 6.6 71 167-237 336-414 (415)
451 cd01124 KaiC KaiC is a circadi 98.4 2E-06 4.4E-11 72.3 8.6 83 164-249 63-164 (187)
452 PRK00409 recombination and DNA 98.3 6.3E-07 1.4E-11 92.1 6.3 71 167-242 385-457 (782)
453 cd01128 rho_factor Transcripti 98.3 4.2E-07 9.1E-12 81.5 4.2 73 171-253 128-210 (249)
454 cd03286 ABC_MSH6_euk MutS6 hom 98.3 2.7E-06 5.9E-11 74.8 9.1 50 192-241 107-159 (218)
455 KOG0979|consensus 98.3 1.3E-05 2.9E-10 82.2 14.1 181 5-234 839-1026(1072)
456 PF13514 AAA_27: AAA domain 98.2 2.2E-05 4.8E-10 83.7 15.2 118 126-246 982-1103(1111)
457 PF13166 AAA_13: AAA domain 98.2 7.3E-05 1.6E-09 75.9 17.0 72 168-239 496-575 (712)
458 KOG0250|consensus 98.2 2.7E-05 5.8E-10 80.7 13.1 67 167-233 984-1052(1074)
459 cd03281 ABC_MSH5_euk MutS5 hom 98.1 5.5E-06 1.2E-10 72.5 6.7 63 176-242 94-161 (213)
460 PRK13695 putative NTPase; Prov 98.0 1.1E-05 2.5E-10 67.7 6.7 83 167-258 73-157 (174)
461 TIGR02858 spore_III_AA stage I 98.0 8.8E-06 1.9E-10 73.8 6.0 42 193-240 193-234 (270)
462 COG4637 Predicted ATPase [Gene 98.0 1.8E-05 3.8E-10 72.9 7.0 68 171-240 269-336 (373)
463 PTZ00132 GTP-binding nuclear p 97.9 1.2E-05 2.5E-10 69.6 4.8 52 169-224 147-205 (215)
464 KOG0962|consensus 97.9 1.9E-05 4.1E-10 83.4 7.1 91 171-261 1182-1287(1294)
465 TIGR02655 circ_KaiC circadian 97.5 1E-05 2.2E-10 79.0 -2.4 78 159-248 102-190 (484)
466 PRK06793 fliI flagellum-specif 97.1 0.0022 4.8E-08 61.9 8.4 87 168-262 217-308 (432)
467 COG4694 Uncharacterized protei 97.0 0.043 9.3E-07 54.1 16.7 70 168-237 524-599 (758)
468 PRK13830 conjugal transfer pro 97.0 0.0011 2.4E-08 68.9 6.3 60 192-253 650-721 (818)
469 COG1195 RecF Recombinational D 97.0 0.0022 4.8E-08 60.4 7.2 79 170-253 273-360 (363)
470 TIGR03238 dnd_assoc_3 dnd syst 96.8 0.00037 8.1E-09 67.8 0.9 58 62-124 22-86 (504)
471 PRK07721 fliI flagellum-specif 96.7 0.015 3.2E-07 56.4 11.0 53 203-258 276-336 (438)
472 PRK06067 flagellar accessory p 96.7 0.019 4E-07 50.4 10.3 76 172-249 100-187 (234)
473 PRK13891 conjugal transfer pro 96.6 0.0061 1.3E-07 63.7 7.6 52 188-239 681-734 (852)
474 cd00820 PEPCK_HprK Phosphoenol 96.5 0.00021 4.5E-09 56.1 -2.9 26 62-87 5-36 (107)
475 cd01125 repA Hexameric Replica 96.2 0.0063 1.4E-07 53.7 4.4 44 192-236 109-160 (239)
476 COG3950 Predicted ATP-binding 96.1 0.0063 1.4E-07 57.0 4.1 75 168-242 257-343 (440)
477 cd01120 RecA-like_NTPases RecA 96.1 0.041 9E-07 44.0 8.4 48 191-238 82-140 (165)
478 PRK05399 DNA mismatch repair p 95.6 0.065 1.4E-06 56.2 9.5 69 171-243 665-738 (854)
479 PRK08699 DNA polymerase III su 95.5 0.018 4E-07 53.6 4.7 40 198-237 116-155 (325)
480 COG4717 Uncharacterized conser 95.2 0.51 1.1E-05 48.9 14.0 102 130-237 864-969 (984)
481 PRK13873 conjugal transfer ATP 95.1 0.054 1.2E-06 56.4 7.0 47 192-238 633-681 (811)
482 PRK04778 septation ring format 95.0 0.032 7E-07 55.7 4.8 73 4-130 451-524 (569)
483 PRK04863 mukB cell division pr 94.9 0.031 6.7E-07 61.5 4.9 65 167-234 1360-1437(1486)
484 COG3593 Predicted ATP-dependen 94.4 0.16 3.5E-06 50.8 8.1 65 178-242 285-349 (581)
485 cd01131 PilT Pilus retraction 94.4 0.13 2.7E-06 44.3 6.4 53 188-246 68-120 (198)
486 cd02023 UMPK Uridine monophosp 94.3 0.021 4.6E-07 48.6 1.6 48 156-210 67-114 (198)
487 PRK13898 type IV secretion sys 94.1 0.17 3.6E-06 52.7 7.9 63 177-239 622-689 (800)
488 cd00561 CobA_CobO_BtuR ATP:cor 93.4 0.21 4.6E-06 41.9 5.9 56 192-247 93-152 (159)
489 TIGR02168 SMC_prok_B chromosom 92.7 0.63 1.4E-05 49.5 9.7 79 3-129 967-1045(1179)
490 COG4913 Uncharacterized protei 92.2 0.36 7.8E-06 49.2 6.5 66 170-237 988-1062(1104)
491 TIGR02788 VirB11 P-type DNA tr 92.1 0.32 7E-06 44.7 5.8 56 184-246 208-264 (308)
492 smart00382 AAA ATPases associa 89.6 2.9 6.4E-05 31.4 8.4 61 170-234 58-125 (148)
493 TIGR01070 mutS1 DNA mismatch r 89.5 1.2 2.7E-05 46.7 7.9 69 172-243 651-723 (840)
494 PF00488 MutS_V: MutS domain V 89.4 2.4 5.3E-05 37.5 8.7 70 172-243 102-174 (235)
495 COG4938 Uncharacterized conser 88.5 0.76 1.6E-05 42.4 4.7 50 190-239 256-306 (374)
496 PRK07414 cob(I)yrinic acid a,c 87.6 1.3 2.9E-05 37.8 5.5 55 192-247 113-172 (178)
497 TIGR00708 cobA cob(I)alamin ad 87.2 1 2.2E-05 38.3 4.6 56 192-248 95-155 (173)
498 PRK07471 DNA polymerase III su 86.6 0.96 2.1E-05 42.9 4.5 44 193-237 140-183 (365)
499 TIGR01420 pilT_fam pilus retra 85.5 2.4 5.2E-05 39.6 6.6 57 184-246 185-241 (343)
500 PRK05986 cob(I)alamin adenolsy 85.5 1.6 3.5E-05 37.7 5.0 55 192-247 113-172 (191)
No 1
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-42 Score=303.05 Aligned_cols=192 Identities=21% Similarity=0.284 Sum_probs=156.4
Q ss_pred HHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHH
Q psy17516 32 LRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKL 103 (264)
Q Consensus 32 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l 103 (264)
.+++.+.|..+...+.+ ++++||+|++||+++ |||||||+++.++ |+.|.+.+.+.
T Consensus 4 ~~~v~k~y~~~~~~~~~-------------L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~--- 67 (226)
T COG1136 4 LKNVSKIYGLGGEKVEA-------------LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGK--- 67 (226)
T ss_pred EeeeEEEeccCCcceEe-------------cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE---
Confidence 45667777755433334 455999999999998 9999999999665 45666677774
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCCCC----------CC-chhhHHHhHHHHcCCCcccc-cc
Q psy17516 104 LKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAKLS----------PP-AGKDILDGLEVNVAFGGLWK-ES 169 (264)
Q Consensus 104 ~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~l~----------~~-~~~~~~~~l~~~v~l~~~~~-~~ 169 (264)
++..+++.++..|| ++++|+|||. |+|..++..+ .. ...+....++..+|+.+... ++
T Consensus 68 --d~~~l~~~~~~~~R------~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 139 (226)
T COG1136 68 --DLTKLSEKELAKLR------RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK 139 (226)
T ss_pred --EcCcCCHHHHHHHH------HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC
Confidence 38889988889998 4788999995 7777765211 11 22345678888889997766 88
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEE
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRT 247 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v 247 (264)
|.+||||||||||||||+ +++|+++|+||||++||..+...|+++++++++ ++++|+||||+.++.+|||+|.
T Consensus 140 p~eLSGGqqQRVAIARAL----~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~- 214 (226)
T COG1136 140 PSELSGGQQQRVAIARAL----INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIE- 214 (226)
T ss_pred chhcCHHHHHHHHHHHHH----hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEE-
Confidence 999999999999999886 489999999999999999999999999999874 6789999999999999999999
Q ss_pred EeeCCe
Q psy17516 248 KFVDGN 253 (264)
Q Consensus 248 ~~~~g~ 253 (264)
+.||.
T Consensus 215 -l~dG~ 219 (226)
T COG1136 215 -LKDGK 219 (226)
T ss_pred -EeCCe
Confidence 77987
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-41 Score=290.09 Aligned_cols=191 Identities=24% Similarity=0.249 Sum_probs=150.7
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
.+++++.+.|+. ...+++||++|++||+++ |||||||+|+..| +++|.+.+.|..
T Consensus 3 i~i~~l~K~fg~-----------------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~ 65 (240)
T COG1126 3 IEIKNLSKSFGD-----------------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGED 65 (240)
T ss_pred EEEEeeeEEeCC-----------------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEe
Confidence 455677788872 345667999999999997 9999999999665 456777777642
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC------------CCCCchhhHHHhHHHHcCCCcccc
Q psy17516 102 KLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK------------LSPPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~------------l~~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
+. .......+ +++.|.|||. |||..++- ++..++++.+..++.+||+.++.+
T Consensus 66 -----~~--~~~~~~~~-------R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~ 131 (240)
T COG1126 66 -----VG--DKKDILKL-------RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD 131 (240)
T ss_pred -----cc--chhhHHHH-------HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh
Confidence 11 00022233 3677888884 88877642 122334456778899999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhcccee
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIF 245 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~ 245 (264)
.+|.+||||||||||||||+| -+|+++|||||||||||+.+.+|++.++++++ +.|.|+|||..+.+ +.|||++
T Consensus 132 ~yP~qLSGGQqQRVAIARALa----M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrvi 207 (240)
T COG1126 132 AYPAQLSGGQQQRVAIARALA----MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI 207 (240)
T ss_pred hCccccCcHHHHHHHHHHHHc----CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEE
Confidence 999999999999999999886 47899999999999999999999999999986 66888999999998 5799999
Q ss_pred EEEeeCCeEEEE
Q psy17516 246 RTKFVDGNSNVT 257 (264)
Q Consensus 246 ~v~~~~g~s~i~ 257 (264)
- |++|+.-..
T Consensus 208 F--md~G~iie~ 217 (240)
T COG1126 208 F--MDQGKIIEE 217 (240)
T ss_pred E--eeCCEEEEe
Confidence 9 779966443
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.7e-39 Score=337.03 Aligned_cols=209 Identities=33% Similarity=0.554 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhHHHH
Q psy17516 5 EVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRTLLF 84 (264)
Q Consensus 5 ~~~~~~~~l~~~~~~l~~~vn~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKSTLl~ 84 (264)
+++++++.++.+++.+| +||+.|+.+|++++++|.
T Consensus 946 ~~~~~i~~le~~i~~lg-~VN~~Aiee~e~~~~r~~-------------------------------------------- 980 (1163)
T COG1196 946 ELEREIERLEEEIEALG-PVNLRAIEEYEEVEERYE-------------------------------------------- 980 (1163)
T ss_pred HHHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHH--------------------------------------------
Confidence 67899999999999998 999999999999999999
Q ss_pred hhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcCCCcCCCCCCchhh-HHHhHHHHcCCC
Q psy17516 85 ISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKD-ILDGLEVNVAFG 163 (264)
Q Consensus 85 ~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~g~~~~l~~~~~~~-~~~~l~~~v~l~ 163 (264)
.+..+..++..+...|.+.|.+++...+..|..+|+.|+.+|..+|..|++||++.+.+.++++ +..|+.+.+.||
T Consensus 981 ---~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Giei~a~pp 1057 (1163)
T COG1196 981 ---ELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGIEISARPP 1057 (1163)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCcEEEEECC
Confidence 7888889999999999999999999999999999999999999999999999999988877655 457999999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccc
Q psy17516 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANV 243 (264)
Q Consensus 164 ~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~ 243 (264)
+++.++++.||||||.++|||++||++.++|+|||+|||++|+||..|+.++.++|++.++++|||||||++.||+.||+
T Consensus 1058 gK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad~ 1137 (1163)
T COG1196 1058 GKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADR 1137 (1163)
T ss_pred CCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeC-CeEEEEEeec
Q psy17516 244 IFRTKFVD-GNSNVTRTVN 261 (264)
Q Consensus 244 l~~v~~~~-g~s~i~~~~~ 261 (264)
+|||||.+ |+|+|+.+..
T Consensus 1138 l~GVtm~~~GvS~vvsv~l 1156 (1163)
T COG1196 1138 LVGVTMQEKGVSKVVSVDL 1156 (1163)
T ss_pred HeeeEeecCCceEEEEeeH
Confidence 99999987 9999998754
No 4
>KOG0933|consensus
Probab=100.00 E-value=3.8e-38 Score=312.84 Aligned_cols=215 Identities=67% Similarity=1.021 Sum_probs=207.8
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhH
Q psy17516 2 NPHEVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRT 81 (264)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~l~~~vn~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKST 81 (264)
||++++.++++|+++..+|++.|||+++..+++.+++|.
T Consensus 959 ~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~----------------------------------------- 997 (1174)
T KOG0933|consen 959 DPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEA----------------------------------------- 997 (1174)
T ss_pred CHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHH-----------------------------------------
Confidence 789999999999999999999999999999999999998
Q ss_pred HHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC
Q psy17516 82 LLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA 161 (264)
Q Consensus 82 Ll~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~ 161 (264)
.+.+...++..++..|.+.|..+|+.++..+..+|..||..||.||..|+||..|.+.+.+....+.|+..+|+
T Consensus 998 ------~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~LLPga~AkL~Ppeg~~~~dGLEvkV~ 1071 (1174)
T KOG0933|consen 998 ------ALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTLLPGAMAKLEPPEGKTVLDGLEVKVK 1071 (1174)
T ss_pred ------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCccccccCCCCCccccceEEEEE
Confidence 67777899999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred CCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhc
Q psy17516 162 FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 162 l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~a 241 (264)
+.+.|..++++||||||++|||+++||+..++|+|+|||||++||||..+++.|..+|+....++||||||...+|+..|
T Consensus 1072 ~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKeGMF~NA 1151 (1174)
T KOG0933|consen 1072 FGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKEGMFNNA 1151 (1174)
T ss_pred eCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cceeEEEeeCCeEEEEEeeccC
Q psy17516 242 NVIFRTKFVDGNSNVTRTVNRK 263 (264)
Q Consensus 242 d~l~~v~~~~g~s~i~~~~~~~ 263 (264)
|++|.+.+.||+|+|.|++...
T Consensus 1152 NvLFrtrF~DG~Stv~r~~~~q 1173 (1174)
T KOG0933|consen 1152 NVLFRTRFVDGVSTVQRTVTKQ 1173 (1174)
T ss_pred hhhheeeeecCceeeeeecccC
Confidence 9999999999999999998764
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-38 Score=284.59 Aligned_cols=185 Identities=21% Similarity=0.209 Sum_probs=150.7
Q ss_pred cccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh--
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG-- 130 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~-- 130 (264)
..++|||+|++||+++ +|||||++|+.. .|++|.++++|.+ +..++......+|+-...|.|+|.
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~d-----i~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQD-----LTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEe-----cccCChHHHHHHHhhccEEecccccc
Confidence 3455999999999998 999999999854 5778889888854 888988888888865555556653
Q ss_pred ---hHHHhh-cCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 131 ---SIFSLL-LPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 131 ---~vf~~L-~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
+||+++ +|-.-++.+..+.+.++.+++..||++++.+++|.+|||||||||+||||+| .+|+++|+||||||
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa----~~P~iLL~DEaTSA 171 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA----NNPKILLCDEATSA 171 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh----cCCCEEEecCcccc
Confidence 555542 3332233334444567888999999999999999999999999999999875 78899999999999
Q ss_pred CCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEEE
Q psy17516 207 LDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSNV 256 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~i 256 (264)
|||+.+..|+++|+++++ +.|+++|||.+... ..|||+.- |++|..--
T Consensus 172 LDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVav--m~~G~lvE 222 (339)
T COG1135 172 LDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAV--LDQGRLVE 222 (339)
T ss_pred CChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheE--eeCCEEEE
Confidence 999999999999999875 78899999999887 57999987 77887533
No 6
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=9.9e-37 Score=258.38 Aligned_cols=193 Identities=19% Similarity=0.241 Sum_probs=152.8
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhh--hhhccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFIS--MEAMTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l--~~l~~~~~~~~~~~~ 101 (264)
.+++++.++|..+ +..+++|||+|++|||+. |||||||+++ ...+++|.+++++.+
T Consensus 2 I~f~~V~k~Y~~g----------------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~d 65 (223)
T COG2884 2 IRFENVSKAYPGG----------------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHD 65 (223)
T ss_pred eeehhhhhhcCCC----------------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCee
Confidence 4678999999955 334567999999999986 9999999987 456788888888864
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCccccc
Q psy17516 102 KLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWKE 168 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~~ 168 (264)
+..+.....--+| +++|.|||. |++..+.. ....+..+.+..++..|||.++.+.
T Consensus 66 -----l~~l~~~~iP~LR-------R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~ 133 (223)
T COG2884 66 -----LSRLKGREIPFLR-------RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA 133 (223)
T ss_pred -----cccccccccchhh-------heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhc
Confidence 7777765555555 456666663 44443321 1223344567888899999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhcc-ceeE
Q psy17516 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNAN-VIFR 246 (264)
Q Consensus 169 ~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad-~l~~ 246 (264)
.|.+||||||||||||||+ ++.|+++|+||||++|||....+|++++.+++. ++|++|.|||..++.... +++.
T Consensus 134 lP~~LSGGEQQRvaIARAi----V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~ 209 (223)
T COG2884 134 LPSQLSGGEQQRVAIARAI----VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA 209 (223)
T ss_pred CccccCchHHHHHHHHHHH----ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEE
Confidence 9999999999999999875 689999999999999999999999999999986 888999999999987765 3444
Q ss_pred EEeeCCeEEE
Q psy17516 247 TKFVDGNSNV 256 (264)
Q Consensus 247 v~~~~g~s~i 256 (264)
+++|....
T Consensus 210 --l~~Grl~~ 217 (223)
T COG2884 210 --LEDGRLVR 217 (223)
T ss_pred --EeCCEEEe
Confidence 67887543
No 7
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-36 Score=261.37 Aligned_cols=200 Identities=21% Similarity=0.172 Sum_probs=156.0
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~ 100 (264)
+.+++++.+.|..+ +..+++|||+|++||+++ |||||||+++.++. +.|++.+.+.
T Consensus 3 ~i~~~nl~k~yp~~----------------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~ 66 (258)
T COG3638 3 MIEVKNLSKTYPGG----------------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGV 66 (258)
T ss_pred eEEEeeeeeecCCC----------------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEeccc
Confidence 44567788888522 456677999999999998 99999999997763 4666777765
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhh-----hHHHhhcCCCcCCC---------CCCchhhHHHhHHHHcCCCccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFG-----SIFSLLLPGSQAKL---------SPPAGKDILDGLEVNVAFGGLW 166 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~-----~vf~~L~~g~~~~l---------~~~~~~~~~~~l~~~v~l~~~~ 166 (264)
+ +..+..++...+|.-...|.|+|. +|+++++.|.-.+. ...+....+-..+.+||+.++.
T Consensus 67 ~-----i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A 141 (258)
T COG3638 67 Q-----ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA 141 (258)
T ss_pred c-----hhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH
Confidence 3 778887777788765555555553 56666665543322 1122223445667799999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccc
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANV 243 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~ 243 (264)
.++.++|||||+|||||||++ +++|+++|+|||+|+|||.+...|++.|+++++ +.|+|+.-|+..++ ++|||
T Consensus 142 ~qra~~LSGGQQQRVaIARaL----~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~R 217 (258)
T COG3638 142 YQRASTLSGGQQQRVAIARAL----VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADR 217 (258)
T ss_pred HHHhccCCcchhHHHHHHHHH----hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhh
Confidence 999999999999999999875 589999999999999999999999999999875 68899999998887 79999
Q ss_pred eeEEEeeCCeEE
Q psy17516 244 IFRTKFVDGNSN 255 (264)
Q Consensus 244 l~~v~~~~g~s~ 255 (264)
+|+ |.+|..-
T Consensus 218 iig--l~~G~iv 227 (258)
T COG3638 218 IIG--LKAGRIV 227 (258)
T ss_pred heE--ecCCcEE
Confidence 999 5577653
No 8
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4e-35 Score=245.39 Aligned_cols=196 Identities=20% Similarity=0.241 Sum_probs=160.5
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+.+++++.+.....+-.+. ++++|+|.|++||-++ |||||||-+++++ ++.|++...+.
T Consensus 6 ii~~~~l~ktvg~~~~~l~-------------IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~ 72 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELS-------------ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQ 72 (228)
T ss_pred eeehhhhhhhhcCCCccee-------------EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCc
Confidence 5566677776665543333 4556999999999987 9999999999776 45677777775
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCCC----C-------CCchhhHHHhHHHHcCCCcccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAKL----S-------PPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~l----~-------~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
.+..+++..+..|| ..+.++|||. |+|..++-. + ..+....+..++..||+.+...
T Consensus 73 -----~L~~ldEd~rA~~R------~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~ 141 (228)
T COG4181 73 -----PLHKLDEDARAALR------ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT 141 (228)
T ss_pred -----chhhcCHHHHHHhh------ccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc
Confidence 38899999999998 5788999995 777766521 1 1122344678888999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhcccee
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~ 245 (264)
.+|.+|||||+|||||||||| ..|+++++||||++||.+...+|.+++-.++. ++|.|+||||+.++..|+|.+
T Consensus 142 HyP~qLSGGEQQRVAiARAfa----~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~ 217 (228)
T COG4181 142 HYPAQLSGGEQQRVALARAFA----GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQL 217 (228)
T ss_pred cCccccCchHHHHHHHHHHhc----CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhee
Confidence 999999999999999999986 57899999999999999999999999988764 688999999999999999999
Q ss_pred EEEeeCCeE
Q psy17516 246 RTKFVDGNS 254 (264)
Q Consensus 246 ~v~~~~g~s 254 (264)
. |++|..
T Consensus 218 r--~~~G~l 224 (228)
T COG4181 218 R--LRSGRL 224 (228)
T ss_pred e--eeccee
Confidence 9 778764
No 9
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-34 Score=253.05 Aligned_cols=188 Identities=21% Similarity=0.214 Sum_probs=151.0
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
.+++++.++|.. +...+++||+|++|||+. |||||+|+++..+ +++|.+++++++
T Consensus 2 I~~~nvsk~y~~-----------------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~ 64 (309)
T COG1125 2 IEFENVSKRYGN-----------------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED 64 (309)
T ss_pred ceeeeeehhcCC-----------------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee
Confidence 467888999982 345567999999999997 9999999998554 567888888864
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCc--cc
Q psy17516 102 KLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGG--LW 166 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~--~~ 166 (264)
|..++.. .+| +++|||.|. |||..++ +|.....+++..+++..+|+++ +.
T Consensus 65 -----i~~~d~~---~LR-------r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~ 129 (309)
T COG1125 65 -----ISDLDPV---ELR-------RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA 129 (309)
T ss_pred -----cccCCHH---HHH-------HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHh
Confidence 6666643 244 456777774 7777654 2233344567888999999964 88
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccc
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANV 243 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~ 243 (264)
+++|++|||||+|||.+|||+| .+|+++|+|||++||||.++..+-+.++++.+ +.|+|+||||...+ +.|||
T Consensus 130 ~RyP~eLSGGQQQRVGv~RALA----adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadr 205 (309)
T COG1125 130 DRYPHELSGGQQQRVGVARALA----ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADR 205 (309)
T ss_pred hcCchhcCcchhhHHHHHHHHh----cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhce
Confidence 9999999999999999999876 68899999999999999999999999998876 78999999997654 88999
Q ss_pred eeEEEeeCCeEE
Q psy17516 244 IFRTKFVDGNSN 255 (264)
Q Consensus 244 l~~v~~~~g~s~ 255 (264)
+.- |.+|...
T Consensus 206 i~v--m~~G~i~ 215 (309)
T COG1125 206 IAV--MDAGEIV 215 (309)
T ss_pred EEE--ecCCeEE
Confidence 988 6677653
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=4.5e-33 Score=291.49 Aligned_cols=209 Identities=30% Similarity=0.460 Sum_probs=191.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhHH
Q psy17516 3 PHEVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRTL 82 (264)
Q Consensus 3 ~~~~~~~~~~l~~~~~~l~~~vn~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKSTL 82 (264)
..++.+++.+++.+++.+| +||++|+.+|+.+..+|.
T Consensus 953 ~~~l~~~l~~l~~~i~~l~-~vN~~Ai~~~~~~~~~~~------------------------------------------ 989 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALE-PVNMLAIQEYEEVLKRLD------------------------------------------ 989 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHH------------------------------------------
Confidence 4678889999999999998 899999999999999999
Q ss_pred HHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcCCCcCCCCCCchhh-HHHhHHHHcC
Q psy17516 83 LFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKD-ILDGLEVNVA 161 (264)
Q Consensus 83 l~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~g~~~~l~~~~~~~-~~~~l~~~v~ 161 (264)
++..+..++......|.+.|..++..++..|..+|..|+.+|..+|+.|+ |+.+.+...++.+ ...|+...+.
T Consensus 990 -----~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~ 1063 (1164)
T TIGR02169 990 -----ELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAELS-GGTGELILENPDDPFAGGLELSAK 1063 (1164)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEecCCCCcccCCeEEEEE
Confidence 78888899999999999999999999999999999999999999999999 8887765544333 4467888888
Q ss_pred CCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhc
Q psy17516 162 FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 162 l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~a 241 (264)
|+++..+++..||||||++++||++||...+.|||||+|||||++||+.++..+.++|.++++++|||||||+..++..|
T Consensus 1064 ~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~ 1143 (1164)
T TIGR02169 1064 PKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYA 1143 (1164)
T ss_pred cCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhc
Confidence 99988899999999999999999999987789999999999999999999999999999988889999999999999999
Q ss_pred cceeEEEee-CCeEEEEEee
Q psy17516 242 NVIFRTKFV-DGNSNVTRTV 260 (264)
Q Consensus 242 d~l~~v~~~-~g~s~i~~~~ 260 (264)
|++|+|+|. +|+|+|+++.
T Consensus 1144 d~~~~~~~~~~g~S~~~~~~ 1163 (1164)
T TIGR02169 1144 DRAIGVTMRRNGESQVFGLK 1163 (1164)
T ss_pred ceeEeEEEecCCeeEEEecc
Confidence 999999997 8999999864
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-34 Score=258.08 Aligned_cols=183 Identities=22% Similarity=0.292 Sum_probs=142.2
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh-c-cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA-M-TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-~-~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+.+.+++||++++||+++ |||||||+++.++ + ..|.+..+++. |..++.+...+ ....++|..
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~-----i~~~~~kelAk---~ia~vpQ~~~ 86 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKD-----IASLSPKELAK---KLAYVPQSPS 86 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCc-----hhhcCHHHHhh---hEEEeccCCC
Confidence 567889999999999998 9999999999774 3 35567777753 77776544332 222233332
Q ss_pred ---h-hHHHhhcCCCcCCCCC----Cc-hhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 130 ---G-SIFSLLLPGSQAKLSP----PA-GKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 130 ---~-~vf~~L~~g~~~~l~~----~~-~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
+ +||+.+..|+..+... .. ..+.+...+..+|+.+..++.+.+|||||||||.||||+| ++|+++||
T Consensus 87 ~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa----Q~~~iLLL 162 (258)
T COG1120 87 APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA----QETPILLL 162 (258)
T ss_pred CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh----cCCCEEEe
Confidence 2 5777777776653321 11 2235667778899999999999999999999999998875 89999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
||||++||..++.+++++++++++ +.++|+|+||.+.+ .+||+++- |.+|...
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~--lk~G~i~ 218 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLIL--LKDGKIV 218 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE--EECCeEE
Confidence 999999999999999999999884 58899999999876 68999988 6687653
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.6e-34 Score=248.45 Aligned_cols=194 Identities=21% Similarity=0.248 Sum_probs=150.6
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~ 99 (264)
.+.+++++.+.|. .+.+.+++||+|++||+++ +||||||+++.++ |++|++.+.+
T Consensus 7 ~~I~vr~v~~~fG-----------------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G 69 (263)
T COG1127 7 PLIEVRGVTKSFG-----------------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG 69 (263)
T ss_pred ceEEEeeeeeecC-----------------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcC
Confidence 3456677777777 3567788999999999998 9999999988664 5677888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC------------CCCCchhhHHHhHHHHcCCCcc
Q psy17516 100 RAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK------------LSPPAGKDILDGLEVNVAFGGL 165 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~------------l~~~~~~~~~~~l~~~v~l~~~ 165 (264)
.+ |..+++..+..++ +++|.+||. ||...+.. ++....++.+..-+..||+++.
T Consensus 70 ~~-----i~~ls~~~~~~ir-------~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~ 137 (263)
T COG1127 70 ED-----IPQLSEEELYEIR-------KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA 137 (263)
T ss_pred cc-----hhccCHHHHHHHH-------hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChh
Confidence 64 7788876665555 556666663 55444331 1111223444455568899987
Q ss_pred -cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhc
Q psy17516 166 -WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNA 241 (264)
Q Consensus 166 -~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~a 241 (264)
.+.+|++||||++.|||||||+| -+|+++++||||+||||.....+-++|+++.+ +.|+|+||||...+ ..|
T Consensus 138 ~~~~~PsELSGGM~KRvaLARAia----ldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~ 213 (263)
T COG1127 138 AADLYPSELSGGMRKRVALARAIA----LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIA 213 (263)
T ss_pred hhhhCchhhcchHHHHHHHHHHHh----cCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhh
Confidence 89999999999999999999876 58899999999999999999999999999876 78999999997654 789
Q ss_pred cceeEEEeeCCeEEE
Q psy17516 242 NVIFRTKFVDGNSNV 256 (264)
Q Consensus 242 d~l~~v~~~~g~s~i 256 (264)
|+++- +.||..-.
T Consensus 214 Drv~~--L~~gkv~~ 226 (263)
T COG1127 214 DRVAV--LADGKVIA 226 (263)
T ss_pred ceEEE--EeCCEEEE
Confidence 99987 45776543
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=248.52 Aligned_cols=164 Identities=24% Similarity=0.247 Sum_probs=129.4
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
.++++||+|.+|||++ |||||||++++++. +.|++.+.+.. +.. +....++|
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~-----v~~---------------p~~~~~~v 77 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP-----VTG---------------PGPDIGYV 77 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc-----cCC---------------CCCCEEEE
Confidence 4557999999999998 99999999998864 45566666642 211 12345667
Q ss_pred HHh--hcCCCcCCC-----------CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 133 FSL--LLPGSQAKL-----------SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 133 f~~--L~~g~~~~l-----------~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
||. |+|..++.- ...+....+..++..||+.+..+++|.+|||||||||||||+++ .+|+++|
T Consensus 78 FQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~----~~P~lLL 153 (248)
T COG1116 78 FQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALA----TRPKLLL 153 (248)
T ss_pred eccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHh----cCCCEEE
Confidence 774 666655421 11222346778888999999999999999999999999998875 7889999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTK 248 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~ 248 (264)
+|||++|||...+..+.+.+.++.+ +.|+++||||...+ -.|||+|-++
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~ 205 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS 205 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEec
Confidence 9999999999999999999988764 58999999997655 6799999954
No 14
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=5.7e-34 Score=249.71 Aligned_cols=192 Identities=22% Similarity=0.220 Sum_probs=139.6
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
++++++...|+.+..-. .+.++|||+|.+||.++ ||||||+++++++ +++|++.+.|+.
T Consensus 4 l~v~nl~~~y~~~~~~~-------------~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~ 70 (252)
T COG1124 4 LSVRNLSIVYGGGKFAF-------------HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKP 70 (252)
T ss_pred EEEeceEEEecCCcchh-------------hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcc
Confidence 34566677777442111 35667999999999998 9999999999776 457778887753
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh----hcCCCcCCC---------CCCchhhHHHhHHHHcCCCc-ccc
Q psy17516 102 KLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL----LLPGSQAKL---------SPPAGKDILDGLEVNVAFGG-LWK 167 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~----L~~g~~~~l---------~~~~~~~~~~~l~~~v~l~~-~~~ 167 (264)
+......+ .+. +..+.|||. +-|..+... ...+.+.....++..||++. .++
T Consensus 71 -----~~~~~~~~--~~~-------~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~ 136 (252)
T COG1124 71 -----LAPKKRAK--AFY-------RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD 136 (252)
T ss_pred -----cCccccch--hhc-------cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHh
Confidence 22211111 222 233455553 333322211 01122234678888999974 679
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccce
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVI 244 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l 244 (264)
++|.+|||||+||+|||||++ -+|+++|||||||+||...+..|+++|.++.+ +-++|+||||..+++ .|||+
T Consensus 137 R~P~eLSGGQ~QRiaIARAL~----~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi 212 (252)
T COG1124 137 RRPHELSGGQRQRIAIARALI----PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRI 212 (252)
T ss_pred cCchhcChhHHHHHHHHHHhc----cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhe
Confidence 999999999999999998864 67899999999999999999999999999876 569999999999885 59999
Q ss_pred eEEEeeCCeE
Q psy17516 245 FRTKFVDGNS 254 (264)
Q Consensus 245 ~~v~~~~g~s 254 (264)
+- |.+|..
T Consensus 213 ~V--m~~G~i 220 (252)
T COG1124 213 AV--MDNGQI 220 (252)
T ss_pred ee--eeCCeE
Confidence 87 778865
No 15
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2.7e-33 Score=259.53 Aligned_cols=187 Identities=24% Similarity=0.267 Sum_probs=148.1
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
..+++++.+.|.. ....+++||+|++|||++ |||||||+||+++ |+.|.+.+.|+
T Consensus 5 ~l~i~~v~k~yg~-----------------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~ 67 (352)
T COG3842 5 ALEIRNVSKSFGD-----------------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGE 67 (352)
T ss_pred eEEEEeeeeecCC-----------------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 3455677788871 344556999999999997 9999999999876 45667777775
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC------CC----CC--chhhHHHhHHHHcCCCccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK------LS----PP--AGKDILDGLEVNVAFGGLW 166 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~------l~----~~--~~~~~~~~l~~~v~l~~~~ 166 (264)
. |..+...+ ++++.|||. |||..++. |. .. +...++..++..+++.+..
T Consensus 68 ~-----i~~lpp~k------------R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~ 130 (352)
T COG3842 68 D-----ITDVPPEK------------RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA 130 (352)
T ss_pred E-----CCCCChhh------------cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh
Confidence 3 76666433 456778885 77776642 11 11 1234678888899999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-Hhhccc
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANV 243 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~ 243 (264)
+++|++|||||+||||||||++ ..|+++|||||.|+||..-+..+..-++++.+ +.|||+||||.+. +..|||
T Consensus 131 ~R~p~qLSGGQqQRVALARAL~----~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDr 206 (352)
T COG3842 131 DRKPHQLSGGQQQRVALARALV----PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDR 206 (352)
T ss_pred hhChhhhChHHHHHHHHHHHhh----cCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccc
Confidence 9999999999999999998875 68899999999999999999999999988764 7899999999776 478999
Q ss_pred eeEEEeeCCeEE
Q psy17516 244 IFRTKFVDGNSN 255 (264)
Q Consensus 244 l~~v~~~~g~s~ 255 (264)
+.- |.+|...
T Consensus 207 I~V--m~~G~I~ 216 (352)
T COG3842 207 IAV--MNDGRIE 216 (352)
T ss_pred eEE--ccCCcee
Confidence 988 7788653
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.4e-33 Score=255.84 Aligned_cols=188 Identities=22% Similarity=0.255 Sum_probs=146.2
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~ 99 (264)
|..+++++.+.|+.. . ..+++||+|+.|||++ |||||||++++++. +.|++.+.|
T Consensus 2 ~~i~l~~v~K~yg~~----------------~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 2 AELELKNVRKSFGSF----------------E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred cEEEEeeeEEEcCCc----------------e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 344567778888722 0 4567999999999997 99999999998874 466777777
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCccc
Q psy17516 100 RAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLW 166 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~ 166 (264)
.. +..+...+ ++++.|||+ |+|..++. ....+.+..+..+...+++.+..
T Consensus 65 ~~-----vt~l~P~~------------R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL 127 (338)
T COG3839 65 RD-----VTDLPPEK------------RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLL 127 (338)
T ss_pred EE-----CCCCChhH------------CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHH
Confidence 53 66666543 345566664 55554431 12233345677788889999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcc-hHhhccc
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEG-MFSNANV 243 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~-~~~~ad~ 243 (264)
++.|.+||||||||||||||+ ++.|+++|+|||.|+||...+..+...|+++++ +.|+|.||||.. .|..||+
T Consensus 128 ~r~P~~LSGGQrQRVAlaRAl----Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladr 203 (338)
T COG3839 128 NRKPLQLSGGQRQRVALARAL----VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADR 203 (338)
T ss_pred hcCcccCChhhHHHHHHHHHH----hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCE
Confidence 999999999999999999875 578999999999999999999999999999875 689999999965 4678999
Q ss_pred eeEEEeeCCeEE
Q psy17516 244 IFRTKFVDGNSN 255 (264)
Q Consensus 244 l~~v~~~~g~s~ 255 (264)
+.- |.+|+..
T Consensus 204 i~V--m~~G~i~ 213 (338)
T COG3839 204 IVV--MNDGRIQ 213 (338)
T ss_pred EEE--EeCCeee
Confidence 987 5587654
No 17
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=1e-31 Score=250.11 Aligned_cols=178 Identities=22% Similarity=0.241 Sum_probs=133.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..++++||+|++||+++ ||||||++++.++ ++.|.+.+.+.+ +..++.......+ +.+++
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~-----i~~~~~~~l~~~r-------~~Ig~ 86 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD-----LTTLSNSELTKAR-------RQIGM 86 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-----CCcCCHHHHHHHh-------cCEEE
Confidence 35667999999999997 9999999999775 446777777653 5555433322233 23333
Q ss_pred HHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
+||. +++..++ .....+..+....++..+|+.++.++++.+|||||||||+||||++ .+|+++
T Consensus 87 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~----~~P~iL 162 (343)
T TIGR02314 87 IFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALA----SNPKVL 162 (343)
T ss_pred EECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH----hCCCEE
Confidence 3332 2222221 1111112234567788899999999999999999999999999875 689999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|+||||++||+.++..++++|+++++ +.++|+|||+...+ +.||+++- |++|...
T Consensus 163 LlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~v--l~~G~iv 220 (343)
T TIGR02314 163 LCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAV--ISNGELI 220 (343)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999999999865 67899999998877 67999987 7788653
No 18
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4e-31 Score=238.96 Aligned_cols=177 Identities=20% Similarity=0.206 Sum_probs=145.3
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
-.+++||+|+.||+.. ||||||++++..+ |+.|++++.+++ |..++......||+ ..++.|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~d-----i~~~~~~~Lr~~Rr------~~~sMV 111 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKD-----IAKLSAAELRELRR------KKISMV 111 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcc-----hhcCCHHHHHHHHh------hhhhhh
Confidence 3457999999999886 9999999998654 567888888864 88999888888883 567777
Q ss_pred HHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 133 FSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 133 f~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
||. |+|..+.- ....+.+++..+++..|||.++.+++|++||||+||||.|||||| .+|+++|
T Consensus 112 FQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla----~~~~IlL 187 (386)
T COG4175 112 FQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALA----NDPDILL 187 (386)
T ss_pred hhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHc----cCCCEEE
Confidence 875 66766531 112233456778888999999999999999999999999999876 7899999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNS 254 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s 254 (264)
+|||+|||||--+.++.+-|.++.+ +.|+|+||||... +...|||-- |+||..
T Consensus 188 MDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIai--mkdG~i 243 (386)
T COG4175 188 MDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAI--MKDGEI 243 (386)
T ss_pred ecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEE--ecCCeE
Confidence 9999999999999999988777654 6789999999654 578999987 889865
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.6e-32 Score=238.98 Aligned_cols=188 Identities=22% Similarity=0.256 Sum_probs=139.4
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
.+++++...|..+ ..+++|||+|++|++++ ||||||++.++++ |.+|.+.+.++.
T Consensus 5 i~v~nl~v~y~~~-----------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~ 67 (254)
T COG1121 5 IEVENLTVSYGNR-----------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKP 67 (254)
T ss_pred EEEeeeEEEECCE-----------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccc
Confidence 3456677777622 25668999999999998 9999999988773 346666666642
Q ss_pred HHHHHHHhhhHHHHHHHHHHH--H--Hhhhhh-hhHHHhhcCCCcCCCC----C-CchhhHHHhHHHHcCCCcccccccC
Q psy17516 102 KLLKVIEELDEKKKIALREAW--L--KVNTDF-GSIFSLLLPGSQAKLS----P-PAGKDILDGLEVNVAFGGLWKESLG 171 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~--~--~v~~~f-~~vf~~L~~g~~~~l~----~-~~~~~~~~~l~~~v~l~~~~~~~~~ 171 (264)
+.... ...+-+| | .++..| -+|++.+..|...+.. . ....+.+..++.+||+.+++++.++
T Consensus 68 -----~~~~~----~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~ 138 (254)
T COG1121 68 -----VRKRR----KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG 138 (254)
T ss_pred -----ccccc----cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc
Confidence 11111 0111111 2 223444 3788877766443221 1 1123456778889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch-HhhccceeEE
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM-FSNANVIFRT 247 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~-~~~ad~l~~v 247 (264)
+|||||+|||.||||| +++|++++||||++|+|+.++..|.++|+++.+ +.++++||||... ++++|+++-+
T Consensus 139 ~LSGGQ~QRV~lARAL----~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L 212 (254)
T COG1121 139 ELSGGQKQRVLLARAL----AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL 212 (254)
T ss_pred ccCcHHHHHHHHHHHh----ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE
Confidence 9999999999999886 489999999999999999999999999999886 6889999999875 5789998763
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-31 Score=239.86 Aligned_cols=176 Identities=24% Similarity=0.298 Sum_probs=132.8
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHH
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIF 133 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf 133 (264)
+++||++|+.||.++ |||||||+||+++. +.|.+.+++.- +..... ..-+ .+++|+||
T Consensus 18 ~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~-----l~D~~~---~~~~------~R~VGfvF 83 (345)
T COG1118 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRV-----LFDVSN---LAVR------DRKVGFVF 83 (345)
T ss_pred cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEe-----ccchhc---cchh------hcceeEEE
Confidence 347999999999998 99999999998874 45666666541 111111 0111 13445555
Q ss_pred Hh--hcCCCc----------CC-CCC--CchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 134 SL--LLPGSQ----------AK-LSP--PAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 134 ~~--L~~g~~----------~~-l~~--~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
|. ||+..+ .. ..+ ......+.+++..+++.+..+++|.+||||||||||||||+| -.|+++
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA----~eP~vL 159 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA----VEPKVL 159 (345)
T ss_pred echhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh----cCCCeE
Confidence 53 444333 22 111 122346788899999999999999999999999999999886 478999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcc-hHhhccceeEEEeeCCeEEEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEG-MFSNANVIFRTKFVDGNSNVT 257 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~-~~~~ad~l~~v~~~~g~s~i~ 257 (264)
|||||.++||..-+..+-.+|+++.+ +.++++||||.+ .++.|||++- |++|....+
T Consensus 160 LLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvv--l~~G~Ieqv 219 (345)
T COG1118 160 LLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVV--LNQGRIEQV 219 (345)
T ss_pred eecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEE--ecCCeeeee
Confidence 99999999999999999999999875 789999999966 4689999998 889876543
No 21
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=220.38 Aligned_cols=202 Identities=16% Similarity=0.187 Sum_probs=141.5
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
.++++++.++|...+ .++.||++..+|++++ |||||+|+|+.++ |..|.+..++.
T Consensus 6 ~l~v~dlHK~~G~~e-----------------VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~ge 68 (256)
T COG4598 6 ALEVEDLHKRYGEHE-----------------VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGE 68 (256)
T ss_pred ceehhHHHhhcccch-----------------hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCe
Confidence 356789999999553 3456999999999997 9999999998554 55666666553
Q ss_pred HHHH------HHHHhhhHHHHHHHHHHHHHhhhhhh-----hHHHhhcCCCc--CCCCCCchhhHHHhHHHHcCCCcccc
Q psy17516 101 AKLL------KVIEELDEKKKIALREAWLKVNTDFG-----SIFSLLLPGSQ--AKLSPPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 101 ~~l~------~~I~~l~~~~~~~~~~~~~~v~~~f~-----~vf~~L~~g~~--~~l~~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
+ |. -.+...+.++..++|....-|.++|. ++.++++...- .+.+..+..+.++.++.++|+.++.+
T Consensus 69 e-i~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~ 147 (256)
T COG4598 69 E-IRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD 147 (256)
T ss_pred E-EEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh
Confidence 2 10 00112333444444433333333332 23333221110 11222333456788899999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hcccee
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIF 245 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~ 245 (264)
.+|..|||||+||+||||++|+ .|.++|+||||+||||+-+.+++..++++++ +.|.++|||....+. .+..++
T Consensus 148 ~YP~~LSGGQQQR~aIARaLam----eP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~ 223 (256)
T COG4598 148 AYPAHLSGGQQQRVAIARALAM----EPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI 223 (256)
T ss_pred cCccccCchHHHHHHHHHHHhc----CCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheE
Confidence 9999999999999999999874 7799999999999999999999999999986 678899999988774 455555
Q ss_pred EEEeeCCeE
Q psy17516 246 RTKFVDGNS 254 (264)
Q Consensus 246 ~v~~~~g~s 254 (264)
- +.+|..
T Consensus 224 f--Lh~G~i 230 (256)
T COG4598 224 F--LHQGKI 230 (256)
T ss_pred E--eeccee
Confidence 4 345553
No 22
>KOG0964|consensus
Probab=99.97 E-value=8.5e-31 Score=259.89 Aligned_cols=211 Identities=27% Similarity=0.469 Sum_probs=187.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhH
Q psy17516 2 NPHEVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRT 81 (264)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~l~~~vn~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKST 81 (264)
++.++.+++.+..++++.++ .||.+|+.+|.+..++.+
T Consensus 950 ~~~el~kkL~~~neelk~ys-~VNKkAldQf~nfseQre----------------------------------------- 987 (1200)
T KOG0964|consen 950 KSKELMKKLHRCNEELKGYS-NVNKKALDQFVNFSEQRE----------------------------------------- 987 (1200)
T ss_pred CHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHH-----------------------------------------
Confidence 46788999999999999998 999999999999999887
Q ss_pred HHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcCCCcCCCCCC------c-------
Q psy17516 82 LLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPP------A------- 148 (264)
Q Consensus 82 Ll~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~g~~~~l~~~------~------- 148 (264)
.+....+.+..++++|.+.|..++.++.+++..||+.|..+|..||+.|.|||++.+... +
T Consensus 988 ------~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~LVp~G~a~iim~k~d~~~d~~e~d~~ 1061 (1200)
T KOG0964|consen 988 ------SLKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRLVPGGTALIIMRKRDNANDHDEDDGD 1061 (1200)
T ss_pred ------HHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCCceeehhhcccccccccccccc
Confidence 666677889999999999999999999999999999999999999999999998833110 0
Q ss_pred ----------hhhHHHhHHHHcCCCcccc--cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHH
Q psy17516 149 ----------GKDILDGLEVNVAFGGLWK--ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIG 216 (264)
Q Consensus 149 ----------~~~~~~~l~~~v~l~~~~~--~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~ 216 (264)
..+...|+-+.|++.++.+ ..+.+||||||..||||++||++.|.|+|||||||.+||||++++..|.
T Consensus 1062 ~~~~s~~~~~sv~~ytGIsI~VSFnskq~E~~~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa 1141 (1200)
T KOG0964|consen 1062 MDGESNEGKDSVEMYTGISIKVSFNSKQGETLEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVA 1141 (1200)
T ss_pred ccccccccccchhhccceeEEEEeecCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHH
Confidence 0122356666777765443 5678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEEEEEee
Q psy17516 217 QMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTV 260 (264)
Q Consensus 217 ~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~i~~~~ 260 (264)
.+|++++.++|||+.|.|+++.+.||..|||.+++.+|+|..+.
T Consensus 1142 ~lIkelS~~aQFI~TTFRpEll~vAdKfygV~f~nKvS~V~~It 1185 (1200)
T KOG0964|consen 1142 DLIKELSDSAQFITTTFRPELLSVADKFYGVKFENKVSTVDEIT 1185 (1200)
T ss_pred HHHHHHhhccceEeecccHHHHHHHHhhhceeeccccccceeee
Confidence 99999999999999999999999999999999999999997654
No 23
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.97 E-value=9.4e-31 Score=227.56 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=127.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++||+++ ||||||+++++++ +..|.+.+.+.. +...+......+++....+.++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~i~~~~q~~~~ 91 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQD-----LTRLRGREIPFLRRHIGMVFQDHRL 91 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe-----hhhcChhHHHHHHHhceEEecCccc
Confidence 46678999999999997 9999999999775 345666666542 3333222111222211111111
Q ss_pred h--hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 129 F--GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 129 f--~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
| .++++++..+.. ...........+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||+
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~----~~p~llllDEPt~ 167 (216)
T TIGR00960 92 LSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIV----HKPPLLLADEPTG 167 (216)
T ss_pred cccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCC
Confidence 1 133333321110 00111112234566777889998889999999999999999998864 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeCCe
Q psy17516 206 ALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVDGN 253 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~ 253 (264)
+||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- |.+|.
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~--l~~G~ 215 (216)
T TIGR00960 168 NLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLT--LSRGR 215 (216)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--EeCCc
Confidence 9999999999999998864 678999999988774 7999987 56764
No 24
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.97 E-value=1.3e-30 Score=226.83 Aligned_cols=183 Identities=21% Similarity=0.219 Sum_probs=127.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHH-HHH----HHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIAL-REA----WLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~-~~~----~~~v~ 126 (264)
.+++++||++++|++++ ||||||+++++++ ++.|.+.+.+.. +...+......+ +.. +|...
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD-----ISKLSEKELAAFRRRHIGFVFQSFN 92 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEe-----hhhcchhHHHHHHhhcEEEEeeccc
Confidence 46778999999999998 9999999999776 345666666542 333321111111 111 11111
Q ss_pred hhhh-hHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 127 TDFG-SIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 127 ~~f~-~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.... ++.+++..+... ..........+..++..+|+.+..++++.+||||||||++|||++ +.+|+++||||||
T Consensus 93 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al----~~~p~lllLDEP~ 168 (218)
T cd03255 93 LLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL----ANDPKIILADEPT 168 (218)
T ss_pred cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH----ccCCCEEEEcCCc
Confidence 0011 333332211100 011111123456677788998888999999999999999999876 4789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCe
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGN 253 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~ 253 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+..||+++- |++|.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~--l~~G~ 217 (218)
T cd03255 169 GNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIE--LRDGK 217 (218)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEE--eeCCc
Confidence 99999999999999999865 6789999999988889999987 66774
No 25
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-31 Score=235.34 Aligned_cols=182 Identities=21% Similarity=0.205 Sum_probs=134.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH----HHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE----AWLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~~~v~~ 127 (264)
..++++||++++|+.++ ||||||++++.++ ++.|.+.+.+.. +.. ......+++ .||+...
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~-----~~~--~~~~~~~~~~vG~VfQnpd~ 90 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLD-----TSS--EKSLLELRQKVGLVFQNPDD 90 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCee-----ccc--hhhHHHhhcceEEEEECccc
Confidence 45667999999999997 9999999998765 345555555532 110 011122222 2344433
Q ss_pred hh--hhHHHhhcCCC-cCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 DF--GSIFSLLLPGS-QAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 ~f--~~vf~~L~~g~-~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
+| .+|++.+..|. +..+..++.+.++...+..+|+.+.++++|..||||||||||||.++| ..|.+++|||||
T Consensus 91 q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa----~~P~iliLDEPt 166 (235)
T COG1122 91 QLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA----MGPEILLLDEPT 166 (235)
T ss_pred ccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH----cCCCEEEEcCCC
Confidence 33 25555543332 223333334456778888999999999999999999999999998887 478999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcC--CeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFKT--SQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~~--~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|+||+..+..++++++++.+. .++|+||||...+ ++||++|- |.+|..
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~v--l~~G~i 217 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV--LDDGKI 217 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEE--EECCEE
Confidence 999999999999999999763 6899999998866 56999998 778876
No 26
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.97 E-value=1.5e-30 Score=243.83 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=134.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
...+++||+|++||+++ |||||||++++++ ++.|.+++.+.. +..++......++ .+.+++
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~-----i~~~~~~~~~~~r------r~~i~~ 75 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGEN-----IMKQSPVELREVR------RKKIGM 75 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEE-----CCcCCHHHHHHHH------hCcEEE
Confidence 45678999999999998 9999999999765 456677777753 5555443332232 134455
Q ss_pred HHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
+||. ++++.+.. +......+.+..++..+|+.+..+++|.+|||||||||+|||+++ .+|+++
T Consensus 76 v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~----~~p~iL 151 (363)
T TIGR01186 76 VFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALA----AEPDIL 151 (363)
T ss_pred EECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHh----cCCCEE
Confidence 5553 44433321 111112244567788899999999999999999999999998875 789999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNS 254 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s 254 (264)
||||||++||+..+..+.+.|.++.+ +.|+|+|||+... ...||+++- |.+|..
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~v--l~~G~i 208 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVI--MKAGEI 208 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EeCCEE
Confidence 99999999999999999999998763 6799999999885 578999987 678864
No 27
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-30 Score=228.21 Aligned_cols=184 Identities=22% Similarity=0.195 Sum_probs=127.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++||+++ ||||||+++++++ ++.|.+.+.+.. +...+......++.....+.+.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-----~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGED-----ISGLSEAELYRLRRRMGMLFQSGAL 88 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----ccccChhhHHHHhcceEEEccCccc
Confidence 46678999999999997 9999999999775 345666665532 3222211111222111111111
Q ss_pred h--hhHHHhhcCCCcC--CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 129 F--GSIFSLLLPGSQA--KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 129 f--~~vf~~L~~g~~~--~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
| .++++++..+... ..........+..++..+++.+..++++.+|||||||||+||++++ .+|+++||||||
T Consensus 89 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt 164 (235)
T cd03261 89 FDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA----LDPELLLYDEPT 164 (235)
T ss_pred CCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCc
Confidence 1 1344443221110 0111111234556777889988889999999999999999998864 789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- |++|..
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~--l~~G~i 215 (235)
T cd03261 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAV--LYDGKI 215 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEE--EECCeE
Confidence 99999999999999998764 67899999998865 57999988 668865
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.2e-31 Score=247.97 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=129.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..++++||++++||+++ |||||||++++++ ++.|++.+++.. +..+...+ +.+++
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~-----i~~~~~~~------------r~ig~ 80 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV-----VNELEPAD------------RDIAM 80 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEE-----CCCCCHHH------------CCEEE
Confidence 45678999999999997 9999999999876 345667666642 33333211 12334
Q ss_pred HHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
+||. ++|..++ .....+....+..++..+++.+..+++|.+|||||||||||||+++ .+|+++
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~----~~P~ll 156 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV----REPAVF 156 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh----cCCCEE
Confidence 4442 3333221 1111112234567788899999999999999999999999998864 789999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcc-hHhhccceeEEEeeCCeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEG-MFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~-~~~~ad~l~~v~~~~g~s~ 255 (264)
||||||++||+.++..+.+.|+++.+ +.++|+|||+.. .+..||+++- |++|...
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~v--l~~G~i~ 214 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVV--MNGGVAE 214 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EeCCEEE
Confidence 99999999999999999999998764 689999999976 4578999988 6688763
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3e-31 Score=247.76 Aligned_cols=190 Identities=17% Similarity=0.220 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHH
Q psy17516 26 KKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVE 97 (264)
Q Consensus 26 ~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~ 97 (264)
.+.+++++++.+.|.. ..+++++||++++||+++ |||||||++++++. +.|.+.+
T Consensus 3 ~~~~l~~~~l~~~~~~-----------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~ 65 (351)
T PRK11432 3 QKNFVVLKNITKRFGS-----------------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI 65 (351)
T ss_pred CCcEEEEEeEEEEECC-----------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEE
Confidence 3445556677777752 235677999999999998 99999999998764 4566666
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCc
Q psy17516 98 SDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGG 164 (264)
Q Consensus 98 ~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~ 164 (264)
++.. +...... .++++++||. ++|+.+.. ....+..+.+..++..+++.+
T Consensus 66 ~g~~-----i~~~~~~------------~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~ 128 (351)
T PRK11432 66 DGED-----VTHRSIQ------------QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG 128 (351)
T ss_pred CCEE-----CCCCCHH------------HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch
Confidence 6642 3333211 1234455553 44443321 111122345667788889999
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhc
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNA 241 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~a 241 (264)
..++++.+|||||||||||||+++ .+|+++|||||+++||+..+..+.+.|+++.+ +.++|+|||+...+ ..|
T Consensus 129 ~~~r~~~~LSgGq~QRVaLARaL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~la 204 (351)
T PRK11432 129 FEDRYVDQISGGQQQRVALARALI----LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVS 204 (351)
T ss_pred hhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 999999999999999999999875 68899999999999999999999999998865 68999999998764 789
Q ss_pred cceeEEEeeCCeEE
Q psy17516 242 NVIFRTKFVDGNSN 255 (264)
Q Consensus 242 d~l~~v~~~~g~s~ 255 (264)
|+++- |.+|...
T Consensus 205 D~i~v--m~~G~i~ 216 (351)
T PRK11432 205 DTVIV--MNKGKIM 216 (351)
T ss_pred CEEEE--EECCEEE
Confidence 99988 6788754
No 30
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.96 E-value=2.9e-30 Score=223.98 Aligned_cols=179 Identities=24% Similarity=0.250 Sum_probs=126.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh--hh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT--DF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~--~f 129 (264)
.+.+++||++++||+++ ||||||+++++++ ++.|.+.+.+.. +.. .+....-.+|.... .+
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-----~~~----~~~~i~~v~q~~~~~~~~ 83 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKP-----LEK----ERKRIGYVPQRRSIDRDF 83 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCcc-----HHH----HHhheEEeccccccccCC
Confidence 35678999999999997 9999999999775 446666666542 211 01111001222111 11
Q ss_pred -hhHHHhhcCCCcCC-----CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 130 -GSIFSLLLPGSQAK-----LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 130 -~~vf~~L~~g~~~~-----l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
.++++++..+.... .......+....++..+++.+..++++.+||||||||++|||+++ .+|+++|||||
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~----~~p~llllDEP 159 (213)
T cd03235 84 PISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV----QDPDLLLLDEP 159 (213)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCC
Confidence 24555543221110 001112234566777889988888999999999999999998874 68899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcchH-hhccceeEEEeeCCe
Q psy17516 204 DAALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGMF-SNANVIFRTKFVDGN 253 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~ 253 (264)
|++||+.++..+.++|++++ ++.++|+|||+...+ +.||+++- |++|+
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~--l~~~~ 209 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLL--LNRTV 209 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE--EcCcE
Confidence 99999999999999999986 467899999998876 57999988 55664
No 31
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.4e-31 Score=243.26 Aligned_cols=196 Identities=18% Similarity=0.187 Sum_probs=138.6
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc------cchhHH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM------TKKSIV 96 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~------~~~~~~ 96 (264)
+++++++.+.|..+... ....++|||+|++||+++ ||||||+++++++. +.|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~-------------~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~ 69 (326)
T PRK11022 3 LLNVDKLSVHFGDESAP-------------FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE 69 (326)
T ss_pred eEEEeCeEEEECCCCcc-------------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE
Confidence 34566777777632100 135667999999999998 99999999987754 345666
Q ss_pred HhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh----hcCCCcC------------CCCCCchhhHHHhHHHHc
Q psy17516 97 ESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL----LLPGSQA------------KLSPPAGKDILDGLEVNV 160 (264)
Q Consensus 97 ~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~----L~~g~~~------------~l~~~~~~~~~~~l~~~v 160 (264)
+.+.+ +..++......++ .+.+++|||. +.|..+. .....+..+.+..++..+
T Consensus 70 ~~G~~-----i~~~~~~~~~~~r------~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~ 138 (326)
T PRK11022 70 FNGQD-----LQRISEKERRNLV------GAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQV 138 (326)
T ss_pred ECCEE-----CCcCCHHHHHHHh------CCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC
Confidence 66643 5555544433333 1234444443 1121111 011111223456778889
Q ss_pred CCCc---ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCc
Q psy17516 161 AFGG---LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKE 235 (264)
Q Consensus 161 ~l~~---~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~ 235 (264)
|+.+ ..++++.+|||||+|||+|||+++ .+|+++|+||||++||+.++..++++|+++.+ +.++|+||||.
T Consensus 139 gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~----~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl 214 (326)
T PRK11022 139 GIPDPASRLDVYPHQLSGGMSQRVMIAMAIA----CRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL 214 (326)
T ss_pred CCCChHHHHhCCchhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9964 467899999999999999998875 68899999999999999999999999999864 67899999999
Q ss_pred chH-hhccceeEEEeeCCeE
Q psy17516 236 GMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 236 ~~~-~~ad~l~~v~~~~g~s 254 (264)
..+ +.||+++- |.+|..
T Consensus 215 ~~~~~~adri~v--m~~G~i 232 (326)
T PRK11022 215 ALVAEAAHKIIV--MYAGQV 232 (326)
T ss_pred HHHHHhCCEEEE--EECCEE
Confidence 877 68999987 668764
No 32
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=6.1e-30 Score=216.02 Aligned_cols=181 Identities=21% Similarity=0.252 Sum_probs=137.4
Q ss_pred ccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh--hHH
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG--SIF 133 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~--~vf 133 (264)
..++.|+.||+++ |||||||+++++. |.+|++++++.+ .......++ -....||. +.-|. +|.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d-----~t~~~P~~R-PVSmlFQE-nNLFaHLtV~ 89 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVD-----HTASPPAER-PVSMLFQE-NNLFAHLTVA 89 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCee-----cCcCCcccC-Chhhhhhc-cccchhhhhh
Confidence 4678899999998 9999999999764 557778887764 332222211 11123333 12232 566
Q ss_pred HhhcCCCcCCCCCCchh-hHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHH
Q psy17516 134 SLLLPGSQAKLSPPAGK-DILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT 212 (264)
Q Consensus 134 ~~L~~g~~~~l~~~~~~-~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~ 212 (264)
+++-.|.+..+.+...+ +..+.+..++|+.++.++.|.+|||||||||||||+| +++-|+++||||+|+|||.-+
T Consensus 90 qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARcl----vR~~PilLLDEPFsALdP~LR 165 (231)
T COG3840 90 QNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCL----VREQPILLLDEPFSALDPALR 165 (231)
T ss_pred hhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHH----hccCCeEEecCchhhcCHHHH
Confidence 66666666666554433 4567888899999999999999999999999999886 578899999999999999999
Q ss_pred HHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEEEE
Q psy17516 213 QNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSNVT 257 (264)
Q Consensus 213 ~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~i~ 257 (264)
.++..++.+++. +-|+++|||.+.-+ ..||+++- +++|.....
T Consensus 166 ~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~f--l~~Gri~~~ 211 (231)
T COG3840 166 AEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVF--LDNGRIAAQ 211 (231)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEE--EeCCEEEee
Confidence 999999999875 67899999998765 67999888 568876554
No 33
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=1.8e-30 Score=224.80 Aligned_cols=179 Identities=25% Similarity=0.241 Sum_probs=124.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+.+++||++++|++++ ||||||+++++++ +..|.+.+.+.. +...+.. .++.....+.+.
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~---~~~~~i~~~~q~~~~ 86 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD-----LTKLSLK---ELRRKVGLVFQNPDD 86 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-----cccCCHH---HHHhhceEEecChhh
Confidence 46678999999999997 9999999999775 345666665532 2222211 111111111111
Q ss_pred --h-hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 129 --F-GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 129 --f-~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
+ .++.+++..+... ..........+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||
T Consensus 87 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~----~~p~llllDEPt 162 (211)
T cd03225 87 QFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA----MDPDILLLDEPT 162 (211)
T ss_pred hcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCc
Confidence 1 1334433211100 0111111234556777889988888999999999999999998864 788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeCC
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVDG 252 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~g 252 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- |.+|
T Consensus 163 ~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~--l~~G 210 (211)
T cd03225 163 AGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIV--LEDG 210 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EeCC
Confidence 99999999999999998865 678999999988775 4999987 5566
No 34
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.96 E-value=5.4e-30 Score=223.31 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=127.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHH-HHHHHhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALR-EAWLKVNTD-- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~-~~~~~v~~~-- 128 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+.+.. +..++......++ .....+.+.
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~~i~~v~q~~~ 93 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQS-----LSKLSSNERAKLRNKKLGFIYQFHH 93 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----hhhcCHhHHHHHHHhcEEEEecccc
Confidence 46678999999999997 9999999999775 345666665542 3333322211122 111111111
Q ss_pred -h--hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 129 -F--GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 129 -f--~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
| .++++++..+.. .........+.+..++..+|+.+..++.+.+||||||||++|||+++ .+|+++||||||
T Consensus 94 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~illlDEPt 169 (221)
T TIGR02211 94 LLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV----NQPSLVLADEPT 169 (221)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCC
Confidence 1 133443321100 01111111234556777889988889999999999999999998864 788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCe
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGN 253 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~ 253 (264)
++||+.++..+.++|+++.+ +.++|+|||+...++.||+++- |++|.
T Consensus 170 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~--l~~G~ 218 (221)
T TIGR02211 170 GNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLE--MKDGQ 218 (221)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEE--EeCCE
Confidence 99999999999999998863 6789999999998888999888 66775
No 35
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-30 Score=236.95 Aligned_cols=176 Identities=24% Similarity=0.247 Sum_probs=133.1
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhhcc-------chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEAMT-------KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD 128 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-------~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~ 128 (264)
.++|||+|++||+++ |||||+.+.++++.+ .|++++.+++ +..+++++...+| ...
T Consensus 21 v~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~-----l~~l~~~~~~~iR------G~~ 89 (316)
T COG0444 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD-----LLSLSEKELRKIR------GKE 89 (316)
T ss_pred EeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcc-----cccCCHHHHHhhc------Cce
Confidence 345999999999998 999999987765432 2345666653 7778876555565 356
Q ss_pred hhhHHHh----hcCCCcCC----------C---CCCchhhHHHhHHHHcCCCc---ccccccCCCCHHHHHHHHHHHHHH
Q psy17516 129 FGSIFSL----LLPGSQAK----------L---SPPAGKDILDGLEVNVAFGG---LWKESLGELSGGQRSLVALSLVLA 188 (264)
Q Consensus 129 f~~vf~~----L~~g~~~~----------l---~~~~~~~~~~~l~~~v~l~~---~~~~~~~~LSGGekqrvaiA~~la 188 (264)
++.|||. |-|-.+.+ . ...+..+.+..++..||+++ ..+.+|.+|||||+|||.||.|+|
T Consensus 90 I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala 169 (316)
T COG0444 90 IAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA 169 (316)
T ss_pred EEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh
Confidence 6777775 22222110 0 11122345678888999985 568999999999999999987764
Q ss_pred HhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 189 MLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 189 ~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.+|+++|+||||.|||...+.+|+++|+++.+ +.++|+||||...+ +.||+++= |-.|..
T Consensus 170 ----~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~V--MYaG~i 232 (316)
T COG0444 170 ----LNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV--MYAGRI 232 (316)
T ss_pred ----CCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEE--EECcEE
Confidence 68899999999999999999999999999875 78899999999965 78999987 556643
No 36
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.96 E-value=4.3e-30 Score=222.91 Aligned_cols=182 Identities=19% Similarity=0.189 Sum_probs=125.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||+|++|++++ ||||||+++++++ +.+|++.+.+.. +..++......++.....+.+.
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGED-----VNRLRGRQLPLLRRRIGVVFQDFRL 90 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-----cccCCHHHHHHHHhheEEEecChhh
Confidence 46778999999999997 9999999999776 345666555532 3333221111222111111111
Q ss_pred h--hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 129 F--GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 129 f--~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
| .++.+++..+.. ...........+..++..+++.+..++.+.+|||||+||++|||+++ .+|+++||||||+
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~----~~p~lllLDEPt~ 166 (214)
T TIGR02673 91 LPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV----NSPPLLLADEPTG 166 (214)
T ss_pred ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCcc
Confidence 1 133333221100 00111111234566777889988888999999999999999998864 7889999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeCC
Q psy17516 206 ALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVDG 252 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~g 252 (264)
+||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- |++|
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~--l~~G 213 (214)
T TIGR02673 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVII--LDDG 213 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE--ecCC
Confidence 9999999999999998764 688999999988765 6999987 5566
No 37
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5e-30 Score=238.79 Aligned_cols=185 Identities=19% Similarity=0.165 Sum_probs=129.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +..++......++.....+.+++
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~-----i~~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQD-----LTALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE-----CCcCCHHHHHHHhcCEEEEeCCCcc
Confidence 45678999999999997 9999999999775 446677666642 43333222222221111111111
Q ss_pred ---hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 130 ---GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 130 ---~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
.++++++..+.. .........+.+..++..+|+.+..++++.+||||||||++|||+++ .+|+++||||||+
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~----~~p~iLlLDEPts 169 (343)
T PRK11153 94 LSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA----SNPKVLLCDEATS 169 (343)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcc
Confidence 123333211100 01111111234566777889998899999999999999999998864 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 206 ALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
+||+.++..+.++|+++++ +.++|+|||+...+ +.||+++- |++|...
T Consensus 170 ~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~--l~~G~i~ 220 (343)
T PRK11153 170 ALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAV--IDAGRLV 220 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999864 67899999998876 57999988 6688653
No 38
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.96 E-value=1.7e-29 Score=223.18 Aligned_cols=184 Identities=23% Similarity=0.191 Sum_probs=129.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+++.. +...+......++.....+.+..
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTD-----ITKLRGKKLRKLRRRIGMIFQHYNL 90 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEE-----hhhCCHHHHHHHHhheEEEcCCCcc
Confidence 46678999999999998 9999999999775 346666666642 33332211122222111122221
Q ss_pred ---hhHHHhhcCCCcCC------C---CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 130 ---GSIFSLLLPGSQAK------L---SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~------l---~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
.++++++..+.... + ........+..++..+++.+..++++.+||||||||++||++++ .+|++
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~----~~p~l 166 (243)
T TIGR02315 91 IERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA----QQPDL 166 (243)
T ss_pred cccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh----cCCCE
Confidence 14444443221100 0 01111234566777889988889999999999999999998864 78899
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||||||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |.+|..
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~--l~~G~i 224 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVG--LKAGEI 224 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE--EECCEE
Confidence 999999999999999999999998753 67899999999876 67999988 668864
No 39
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9.2e-30 Score=224.08 Aligned_cols=184 Identities=20% Similarity=0.188 Sum_probs=128.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHH-HHHHHhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALR-EAWLKVNTD-- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~-~~~~~v~~~-- 128 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +..++......++ .....+.++
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----i~~~~~~~~~~~~~~~i~~v~q~~~ 97 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP-----MSKLSSAAKAELRNQKLGFIYQFHH 97 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-----cCcCCHHHHHHHHhccEEEEecCcc
Confidence 46678999999999997 9999999999775 356666666642 3333322222221 111111111
Q ss_pred -h--hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 129 -F--GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 129 -f--~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
| .++++++..+.. .........+.+..++..+|+.+..++++.+||||||||++||++++ .+|+++||||||
T Consensus 98 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~----~~p~lllLDEPt 173 (233)
T PRK11629 98 LLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV----NNPRLVLADEPT 173 (233)
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCC
Confidence 1 133333211100 01111112234567777899988888999999999999999998864 688999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+..+|+++- |.+|..
T Consensus 174 ~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~--l~~G~i 223 (233)
T PRK11629 174 GNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLE--MRDGRL 223 (233)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEE--EECCEE
Confidence 99999999999999998753 6789999999998888887765 778864
No 40
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.96 E-value=5.7e-30 Score=221.96 Aligned_cols=183 Identities=19% Similarity=0.217 Sum_probs=126.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||++++|++++ ||||||+++++++ ++.|++.+.+.. +...+......++.....+.+..
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----i~~~~~~~~~~~~~~i~~v~q~~~~ 89 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD-----VSDLRGRAIPYLRRKIGVVFQDFRL 89 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-----cccCCHHHHHHHHHheEEEecCchh
Confidence 46678999999999997 9999999999776 345666665532 33332211122222111111111
Q ss_pred ---hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 130 ---GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 130 ---~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
.++++++..+... ..........+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||+
T Consensus 90 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~ 165 (214)
T cd03292 90 LPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV----NSPTILIADEPTG 165 (214)
T ss_pred ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHH----cCCCEEEEeCCCC
Confidence 1333332211100 0111111234566777889988888999999999999999998864 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeCCe
Q psy17516 206 ALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVDGN 253 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~ 253 (264)
+||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- |++|.
T Consensus 166 ~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~--l~~G~ 213 (214)
T cd03292 166 NLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIA--LERGK 213 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EeCCc
Confidence 9999999999999998754 678999999988775 6999988 56764
No 41
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.7e-29 Score=222.73 Aligned_cols=184 Identities=24% Similarity=0.207 Sum_probs=128.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
.+++++||++++|++++ ||||||+++++++ +..|.+.+.+.. +...+......++.. +|....
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~i~~~~q~~~~ 89 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD-----INKLKGKALRQLRRQIGMIFQQFNL 89 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEe-----ccccCHhHHHHHHhccEEEcccCcc
Confidence 46678999999999997 9999999999775 345666666542 332221111112211 122111
Q ss_pred hh-hhHHHhhcCCCcC---------CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 128 DF-GSIFSLLLPGSQA---------KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 128 ~f-~~vf~~L~~g~~~---------~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
.. .++++++..+... ........+.+..++..+++.+..++++.+||||||||++||++++ .+|++
T Consensus 90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~l 165 (241)
T cd03256 90 IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM----QQPKL 165 (241)
T ss_pred cccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh----cCCCE
Confidence 11 2444444321110 0001111234556777889988889999999999999999998864 68899
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
+||||||++||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- |.+|..
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~--l~~G~i 223 (241)
T cd03256 166 ILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVG--LKDGRI 223 (241)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999999998863 678999999988776 8999988 668864
No 42
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-30 Score=226.52 Aligned_cols=183 Identities=21% Similarity=0.169 Sum_probs=125.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+++++||++++||+++ ||||||+++++++ +..|.+.+.+.. +...... +..+.-.+|...... .
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-----~~~~~~~-~~~i~~v~q~~~~~~~~ 87 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD-----VTGVPPE-RRNIGMVFQDYALFPHL 87 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-----cCcCchh-hccEEEEcCchhhccCC
Confidence 45678999999999997 9999999999775 345666665532 2222110 000000111111101 1
Q ss_pred hHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++++++..+... ........+.+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||++||+
T Consensus 88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~----~~p~~lllDEPt~~LD~ 163 (213)
T cd03259 88 TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALA----REPSLLLLDEPLSALDA 163 (213)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCH
Confidence 344433211110 1111111234566777889988889999999999999999998864 78999999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.++..+.++|+++.+ +.++|++||+...+ +.||+++. +++|..
T Consensus 164 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~--l~~G~i 209 (213)
T cd03259 164 KLREELREELKELQRELGITTIYVTHDQEEALALADRIAV--MNEGRI 209 (213)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEE--EECCEE
Confidence 999999999998753 67899999998865 67999988 668864
No 43
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=5.9e-30 Score=221.04 Aligned_cols=178 Identities=19% Similarity=0.281 Sum_probs=125.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh-h-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-F- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-f- 129 (264)
.+++++||++++|++++ |||||||++++++ +..|.+.+.+.. +.. ...+..+.-.+|..... +
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~--~~~~~~i~~~~q~~~~~~~~ 86 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP-----IKA--KERRKSIGYVMQDVDYQLFT 86 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-----hhh--HHhhcceEEEecChhhhhhh
Confidence 45678999999999997 9999999999775 345666665532 211 00000000011211000 1
Q ss_pred hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 130 GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 130 ~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
.++.+++..+... .......+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||++||+
T Consensus 87 ~tv~e~l~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~ 159 (205)
T cd03226 87 DSVREELLLGLKE---LDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALL----SGKDLLIFDEPTSGLDY 159 (205)
T ss_pred ccHHHHHhhhhhh---cCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCccCCH
Confidence 1344443221110 0111234566777889998889999999999999999998874 68899999999999999
Q ss_pred HHHHHHHHHHHHhh-cCCeEEEEEeCcchHh-hccceeEEEeeCCe
Q psy17516 210 SHTQNIGQMLKRHF-KTSQFIIVSLKEGMFS-NANVIFRTKFVDGN 253 (264)
Q Consensus 210 ~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~ 253 (264)
.++..+.++|++++ ++.++|++||+...+. .||+++- |.+|.
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~G~ 203 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLL--LANGA 203 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--EECCE
Confidence 99999999999885 4678999999988774 7999988 66775
No 44
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.4e-29 Score=226.47 Aligned_cols=197 Identities=17% Similarity=0.127 Sum_probs=134.6
Q ss_pred HHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHH
Q psy17516 31 SLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAK 102 (264)
Q Consensus 31 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~ 102 (264)
.++++.+.|+. ..+++++||++++|++++ ||||||+++++++. ..|++.+.+..
T Consensus 26 ~~~~~~~~~~~-----------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~- 87 (269)
T cd03294 26 SKEEILKKTGQ-----------------TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQD- 87 (269)
T ss_pred hhhhhhhhcCC-----------------ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE-
Confidence 56788888872 345678999999999997 99999999997753 45666666542
Q ss_pred HHHHHHhhhHHHHHHHHH-----HHHHhhhhh-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCH
Q psy17516 103 LLKVIEELDEKKKIALRE-----AWLKVNTDF-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSG 175 (264)
Q Consensus 103 l~~~I~~l~~~~~~~~~~-----~~~~v~~~f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSG 175 (264)
+...+......++. .+|...... .++.+++..+.. ...........+..++..+++.+..++++.+|||
T Consensus 88 ----~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 163 (269)
T cd03294 88 ----IAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSG 163 (269)
T ss_pred ----ccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCH
Confidence 32222111111110 011110000 133333221100 0011111123345677788998888999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCC
Q psy17516 176 GQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDG 252 (264)
Q Consensus 176 GekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g 252 (264)
|||||++||++++ .+|+++||||||++||+.++..+.++|+++.+ +.++|++||+...+ ..||+++- |++|
T Consensus 164 Gq~qrv~lAral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~--l~~G 237 (269)
T cd03294 164 GMQQRVGLARALA----VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAI--MKDG 237 (269)
T ss_pred HHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE--EECC
Confidence 9999999998864 78999999999999999999999999998853 67899999998765 67999988 6687
Q ss_pred eEE
Q psy17516 253 NSN 255 (264)
Q Consensus 253 ~s~ 255 (264)
...
T Consensus 238 ~i~ 240 (269)
T cd03294 238 RLV 240 (269)
T ss_pred EEE
Confidence 653
No 45
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.96 E-value=1.9e-29 Score=221.08 Aligned_cols=183 Identities=19% Similarity=0.196 Sum_probs=127.8
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH-HHHHhhhhh--
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE-AWLKVNTDF-- 129 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~-~~~~v~~~f-- 129 (264)
+++++||++++||+++ ||||||+++++++ ++.|.+.+.+.. +...+......++. ....+.+..
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~-----~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP-----LHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEE-----cccCCHHHHHHHHhheEEEEEccccc
Confidence 5678999999999998 9999999999776 345666665542 33333221111111 011111111
Q ss_pred ---hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 130 ---GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 130 ---~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
.++++++..+... ..........+..++..+++.+..++++.+||||||||++||++++ .+|+++||||||+
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~----~~p~llllDEPt~ 175 (228)
T PRK10584 100 IPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN----GRPDVLFADEPTG 175 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCC
Confidence 1344433211100 0111111234566777889988888999999999999999998864 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
+||+.++..+.++|+++++ +.++|+|||+...++.||+++- +++|..
T Consensus 176 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~--l~~g~i 224 (228)
T PRK10584 176 NLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLR--LVNGQL 224 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE--EECCEE
Confidence 9999999999999998853 6789999999998888999887 668854
No 46
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.96 E-value=1.7e-29 Score=238.09 Aligned_cols=183 Identities=20% Similarity=0.168 Sum_probs=132.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
...+++||+|++||+++ ||||||+++++++ ++.|++++.++.. ...+...+......++. +.+++
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~-~~~i~~~~~~~l~~~r~------~~i~~ 110 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDG-SIDVANCDAATLRRLRT------HRVSM 110 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEec-ccccccCCHHHHHHHhc------CCEEE
Confidence 45678999999999997 9999999999775 4567777766310 00133344333333331 23444
Q ss_pred HHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
+||. +++..+. ..........+..++..+|+.+..++++.+|||||||||+|||+|+ .+|+++
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa----~~P~IL 186 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFA----MDADIL 186 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh----cCCCEE
Confidence 4442 3332221 1111112234567788899999999999999999999999998875 789999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|+||||++||+..+..+.+.|.++.+ +.++|+|||+...+ +.||+++- |.+|...
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~v--l~~G~iv 244 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAI--MEGGRII 244 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999999998864 68999999998875 78999988 7788653
No 47
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.96 E-value=1.7e-30 Score=229.12 Aligned_cols=185 Identities=17% Similarity=0.167 Sum_probs=128.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+++++||++++|++++ ||||||+++++++ ++.|.+.+.+.. +..........+.-.+|.....+ .
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-----i~~~~~~~~~~i~~~~q~~~~~~~~ 89 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD-----LRRAPRAALARLGVVFQQPTLDLDL 89 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE-----cccCChhhhhhEEEeCCCCCCcccC
Confidence 46778999999999998 9999999999775 445666665532 32222111100000111111101 1
Q ss_pred hHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++.+++..+... ..........+..++..+|+.+..++.+.+|||||+||++|||+++ .+|+++||||||++||+
T Consensus 90 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~----~~p~llllDEP~~~LD~ 165 (236)
T TIGR03864 90 SVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALL----HRPALLLLDEPTVGLDP 165 (236)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCH
Confidence 344433211110 1111111233456677889988889999999999999999998874 78899999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
.++..+.++|+++++ +.++|+|||+...+..||+++- |++|...
T Consensus 166 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~--l~~G~i~ 211 (236)
T TIGR03864 166 ASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVV--LHRGRVL 211 (236)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEE--EeCCeEE
Confidence 999999999998863 6789999999998888999998 6688653
No 48
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=1.9e-30 Score=242.58 Aligned_cols=172 Identities=28% Similarity=0.306 Sum_probs=131.0
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
+++++||++++||+++ |||||||++|+++. +.|.+.+.++. +......+ +.++++
T Consensus 19 ~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~-----~~~~~~~~------------r~ig~v 81 (353)
T TIGR03265 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD-----ITRLPPQK------------RDYGIV 81 (353)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEE-----CCCCCHHH------------CCEEEE
Confidence 5667999999999998 99999999998763 45677766642 33322211 234455
Q ss_pred HHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 133 FSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 133 f~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
||. +||..++. ....+....+..++..+++.+..++++.+|||||||||||||+++ .+|+++|
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~----~~P~llL 157 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA----TSPGLLL 157 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHh----cCCCEEE
Confidence 543 44433321 111112335677888999999999999999999999999998875 6889999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeEE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s~ 255 (264)
||||+++||...+..+.+.|+++.+ +.++|+|||+... +..||+++- |.+|...
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~v--l~~G~i~ 214 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVV--MNHGVIE 214 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999998764 6899999999886 578999988 7788653
No 49
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.7e-30 Score=222.84 Aligned_cols=190 Identities=17% Similarity=0.150 Sum_probs=133.2
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhh---hc----cchhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISME---AM----TKKSI 95 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~---l~----~~~~~ 95 (264)
..+.+++...|+ ++..+++||++|++++++| |||||||+++.- +. -.|++
T Consensus 7 ~~~~~~l~~yYg-----------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v 69 (253)
T COG1117 7 AIEVRDLNLYYG-----------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV 69 (253)
T ss_pred eeEecceeEEEC-----------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE
Confidence 345567777777 2445667999999999998 999999988732 21 23566
Q ss_pred HHhhHHHHHHHHHhh--hHHH-HHHHHHHHHHhhhhhhhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCC----cccc
Q psy17516 96 VESDRAKLLKVIEEL--DEKK-KIALREAWLKVNTDFGSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFG----GLWK 167 (264)
Q Consensus 96 ~~~~~~~l~~~I~~l--~~~~-~~~~~~~~~~v~~~f~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~----~~~~ 167 (264)
++.|++ |..- +... |.+.-.+||..|-.-.+||+++..|... +.....-+++++..+..+.|+ ++.+
T Consensus 70 ~~~g~n-----i~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~ 144 (253)
T COG1117 70 LLDGKN-----IYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH 144 (253)
T ss_pred EECCee-----ccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh
Confidence 666643 3221 2111 1122224666554345788876655332 121222234555555555554 5677
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHh-hccce
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFS-NANVI 244 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~-~ad~l 244 (264)
+++..|||||+||++|||++| -+|+++|+|||||||||.+...|-++|.++.++-|+|||||++.-+. .+|+.
T Consensus 145 ~sa~~LSGGQQQRLcIARalA----v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 145 KSALGLSGGQQQRLCIARALA----VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred CCccCCChhHHHHHHHHHHHh----cCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhh
Confidence 889999999999999999987 47899999999999999999999999999999999999999977654 46654
No 50
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=1.3e-29 Score=215.15 Aligned_cols=153 Identities=24% Similarity=0.306 Sum_probs=120.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||++++|++++ ||||||+++++++ +..|.+.+++.. +...+.. .++ ..+++
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~-----~~~~~~~---~~~-------~~i~~ 77 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD-----LASLSPK---ELA-------RKIAY 77 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----CCcCCHH---HHH-------HHHhH
Confidence 46778999999999998 9999999999775 345666665532 3222211 111 34566
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
+|| ++..+|+.+..++.+.+|||||+||++|||+++ .+|+++||||||++||+.+
T Consensus 78 ~~q---------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~----~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 78 VPQ---------------------ALELLGLAHLADRPFNELSGGERQRVLLARALA----QEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred HHH---------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHH
Confidence 776 344567777777889999999999999998864 6899999999999999999
Q ss_pred HHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 212 TQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 212 ~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+..+.++|+++.+ +.++|++||+...+ +.||+++- +++|..
T Consensus 133 ~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~--l~~g~i 176 (180)
T cd03214 133 QIELLELLRRLARERGKTVVMVLHDLNLAARYADRVIL--LKDGRI 176 (180)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999998865 67899999998876 78999998 668764
No 51
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.96 E-value=2e-29 Score=233.76 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=129.1
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
+.+++||+|++||+++ ||||||+++++++. +.|.+.+.+.+ +..++......++ ..+++|
T Consensus 36 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~-----i~~~~~~~~~~~r-------~~i~~v 103 (331)
T PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD-----LLGMKDDEWRAVR-------SDIQMI 103 (331)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE-----CCcCCHHHHHHHh-------CceEEE
Confidence 5667999999999998 99999999987753 46667766643 4444433222333 223334
Q ss_pred HHh----hcCCCcC-------------CCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 133 FSL----LLPGSQA-------------KLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 133 f~~----L~~g~~~-------------~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
||. ++|..+. .+...+....+.+++..+++. ...++++.+|||||+|||+|||+++ .+
T Consensus 104 ~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~----~~ 179 (331)
T PRK15079 104 FQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI----LE 179 (331)
T ss_pred ecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh----cC
Confidence 432 2222211 011111223456778889994 5678999999999999999998875 68
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
|+++|+||||++||..++..+.++|+++.+ +.++|+||||...+. .||+++- |.+|..
T Consensus 180 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v--l~~G~i 240 (331)
T PRK15079 180 PKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV--MYLGHA 240 (331)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 899999999999999999999999999864 689999999999875 6999987 668754
No 52
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=5.7e-30 Score=225.28 Aligned_cols=182 Identities=20% Similarity=0.213 Sum_probs=127.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH----HHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE----AWLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~~~v~~ 127 (264)
.+++++||++++|++++ ||||||+++++++ +..|.+.+.+.. +...+.... .+. .+|....
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~~--~~~~i~~v~q~~~l 86 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED-----ITGLPPHEI--ARLGIGRTFQIPRL 86 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEE-----CCCCCHHHH--HhcCEEEEeccccc
Confidence 46678999999999997 9999999999775 345666555532 322221111 111 1122111
Q ss_pred hhh-hHHHhhcCCCcCC--C---------CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 128 DFG-SIFSLLLPGSQAK--L---------SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 128 ~f~-~vf~~L~~g~~~~--l---------~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
..+ ++++++..+.... . ........+..++..+|+.+..++++.+||||||||++|||+++ .+|
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~----~~p 162 (236)
T cd03219 87 FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA----TDP 162 (236)
T ss_pred ccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh----cCC
Confidence 111 4444432111100 0 00111234566777889988889999999999999999998864 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+++||||||++||+.++..+.++|+++. ++.++|+|||+...+ ..||+++- +.+|..
T Consensus 163 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~--l~~G~i 221 (236)
T cd03219 163 KLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTV--LDQGRV 221 (236)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE--EeCCEE
Confidence 9999999999999999999999999886 467899999999887 56999988 668865
No 53
>PRK10908 cell division protein FtsE; Provisional
Probab=99.96 E-value=2.9e-29 Score=219.25 Aligned_cols=183 Identities=17% Similarity=0.164 Sum_probs=126.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++|++++ ||||||+++++++ +++|.+.+.+.. +..++......++.....+.+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHD-----ITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----cccCChhHHHHHHhheEEEecCccc
Confidence 46778999999999997 9999999999775 346666666542 3333322211222211111111
Q ss_pred -h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 129 -F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 129 -f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
+ .++.+++..+.. ......+..+.+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||+
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~ 166 (222)
T PRK10908 91 LMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV----NKPAVLLADEPTG 166 (222)
T ss_pred cccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHH----cCCCEEEEeCCCC
Confidence 1 133333321110 01111111223456677889988888999999999999999998864 7889999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeCCe
Q psy17516 206 ALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVDGN 253 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~ 253 (264)
+||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- |++|.
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~ 214 (222)
T PRK10908 167 NLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLT--LSDGH 214 (222)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--EECCE
Confidence 9999999999999998864 688999999988774 6999988 66775
No 54
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.96 E-value=4.9e-29 Score=260.44 Aligned_cols=202 Identities=26% Similarity=0.412 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHH----hhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhHH
Q psy17516 7 TRKYQKLKEQRDKLERTVDKKAQLSLRNEE----NQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRTL 82 (264)
Q Consensus 7 ~~~~~~l~~~~~~l~~~vn~~a~~~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKSTL 82 (264)
+.++.+++.+++.|| + |+.+|++++ ++|.
T Consensus 964 ~~~~~~l~~~i~~lg-~----aiee~~~~~~~a~er~~------------------------------------------ 996 (1179)
T TIGR02168 964 EDDEEEARRRLKRLE-N----KIKELGPVNLAAIEEYE------------------------------------------ 996 (1179)
T ss_pred ccCHHHHHHHHHHHH-H----HHHHcCCCCHHHHHHHH------------------------------------------
Confidence 456788899999998 5 999999888 8898
Q ss_pred HHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHH---HHHHHHhhhhhhhHHHh----hcCCCcCCCCCCchhh-HHH
Q psy17516 83 LFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIAL---REAWLKVNTDFGSIFSL----LLPGSQAKLSPPAGKD-ILD 154 (264)
Q Consensus 83 l~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~---~~~~~~v~~~f~~vf~~----L~~g~~~~l~~~~~~~-~~~ 154 (264)
++..+..++......|.+.|..++...+..| ..+|..|+.+|+.+|.. +++|+.+.+...+.++ +..
T Consensus 997 -----~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~ 1071 (1179)
T TIGR02168 997 -----ELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEA 1071 (1179)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCccccc
Confidence 7878889999999999999999999999999 88999999998866665 4567777665543333 446
Q ss_pred hHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeC
Q psy17516 155 GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK 234 (264)
Q Consensus 155 ~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~ 234 (264)
|+.+.+.++++.+.++..|||||++|++||++||++++.||||+||||||++||+.++..+.++|+.++++.|||||||+
T Consensus 1072 ~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~ 1151 (1179)
T TIGR02168 1072 GIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHN 1151 (1179)
T ss_pred CceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcC
Confidence 77777888888899999999999999999999988888999999999999999999999999999998877899999999
Q ss_pred cchHhhccceeEEEee-CCeEEEEEee
Q psy17516 235 EGMFSNANVIFRTKFV-DGNSNVTRTV 260 (264)
Q Consensus 235 ~~~~~~ad~l~~v~~~-~g~s~i~~~~ 260 (264)
+.++..||++|||++. +|+|+|+++.
T Consensus 1152 ~~~~~~~d~~~~~~~~~~~~~~~~~~~ 1178 (1179)
T TIGR02168 1152 KGTMEVADQLYGVTMQEKGVSKIVSVD 1178 (1179)
T ss_pred hhHHHHhhhHeeeeeccCCceeEeecc
Confidence 9999999999999998 5999999864
No 55
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.5e-29 Score=226.67 Aligned_cols=182 Identities=16% Similarity=0.167 Sum_probs=131.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
..++++||+|++||+++ ||||||+++++++ +.+|++.+.+.. +...... .++.. +|....
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~~~---~~~~~i~~v~q~~~~ 92 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDL-----LTEENVW---DIRHKIGMVFQNPDN 92 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-----CCcCcHH---HHHhhceEEEcChHH
Confidence 35678999999999998 9999999999775 456666666642 3222211 12211 222111
Q ss_pred h-h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 D-F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 ~-f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
. + .++++++..+.. ...........+..++..+|+.+..++.+.+|||||+||++||++++ .+|+++||||||
T Consensus 93 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~----~~p~lLlLDEPt 168 (279)
T PRK13650 93 QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA----MRPKIIILDEAT 168 (279)
T ss_pred hcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECCc
Confidence 1 1 245555432211 11111122234567778889998889999999999999999998875 688999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
++||+.++..+.++|+++++ +.++|+|||+...+..||+++- +.+|...
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~--l~~G~i~ 219 (279)
T PRK13650 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLV--MKNGQVE 219 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999864 6799999999988889999987 6688654
No 56
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.8e-29 Score=232.42 Aligned_cols=177 Identities=18% Similarity=0.194 Sum_probs=130.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+.++|||+|++||+++ ||||||+++++++. ..|.+.+.+.+ +..++......++ ..+++
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~-----l~~~~~~~~~~~r-------~~i~~ 96 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD-----LLKADPEAQKLLR-------QKIQI 96 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEE-----cCcCCHHHHHHHh-------CCEEE
Confidence 35677999999999998 99999999997753 45666666642 4445443333333 23444
Q ss_pred HHHh----hcCCCcC------------CCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 132 IFSL----LLPGSQA------------KLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 132 vf~~----L~~g~~~------------~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
|||. +.+..+. .....+..+.+..++..+|+. ...++++.+|||||+|||+||||++ .+
T Consensus 97 v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~----~~ 172 (327)
T PRK11308 97 VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALM----LD 172 (327)
T ss_pred EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHH----cC
Confidence 4442 2221111 011111223467778889996 4678999999999999999998875 68
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
|+++|+||||++||..++..|+++|+++.+ +.++|+||||...+. .||+++- |.+|..
T Consensus 173 P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~v--m~~G~i 233 (327)
T PRK11308 173 PDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMV--MYLGRC 233 (327)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 899999999999999999999999999864 689999999999885 6999987 667755
No 57
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.7e-30 Score=242.81 Aligned_cols=184 Identities=16% Similarity=0.163 Sum_probs=127.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+++++||++++||+++ |||||||++++++ ++.|.+.+.+.. +..+.... ..+--.+|...... .
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~-----i~~~~~~~-~~i~~v~Q~~~l~~~~ 90 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKR-----MNDVPPAE-RGVGMVFQSYALYPHL 90 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE-----CCCCCHhH-CCEEEEeCCcccCCCC
Confidence 35678999999999997 9999999999876 345666666542 32222111 00000111110000 1
Q ss_pred hHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++++++..+... .....+....+..++..+++.+..++++.+|||||||||+|||+++ .+|+++||||||++||+
T Consensus 91 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~----~~P~lLLLDEPts~LD~ 166 (369)
T PRK11000 91 SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV----AEPSVFLLDEPLSNLDA 166 (369)
T ss_pred CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCH
Confidence 333333211110 1111111234567778899998899999999999999999998874 68899999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
.++..+.++|+++.+ +.++|+|||+...+ ..||+++- |.+|...
T Consensus 167 ~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~v--l~~G~i~ 213 (369)
T PRK11000 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV--LDAGRVA 213 (369)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 999999999998764 68999999998754 68999988 6688653
No 58
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1e-29 Score=223.44 Aligned_cols=185 Identities=18% Similarity=0.144 Sum_probs=127.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+.+++||++++||+++ ||||||+++++++. ..|.+.+.+.. +...+......++.....+.+.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTD-----LTLLSGKELRKARRRIGMIFQHFNL 93 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-----cccCCHHHHHHHHhheEEEccCccc
Confidence 46678999999999998 99999999997753 35566665542 3222211111112111111111
Q ss_pred h--hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 129 F--GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 129 f--~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
| .++++++..+.. ...........+..++..+++.+..++++.+|||||+||++||++++ .+|+++||||||+
T Consensus 94 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~ 169 (233)
T cd03258 94 LSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA----NNPKVLLCDEATS 169 (233)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCCC
Confidence 1 133333221100 00111111234566777889988889999999999999999998864 7889999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 206 ALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
+||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |++|...
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~--l~~G~i~ 220 (233)
T cd03258 170 ALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAV--MEKGEVV 220 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999998763 67899999999876 57999988 6688653
No 59
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=4.2e-30 Score=231.30 Aligned_cols=198 Identities=17% Similarity=0.109 Sum_probs=134.3
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+.+++++.++|. .+.+++++||+|++|++++ ||||||+++++++ +..|.+.+.+.
T Consensus 7 ~l~~~~l~~~~~-----------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (269)
T PRK11831 7 LVDMRGVSFTRG-----------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 69 (269)
T ss_pred eEEEeCeEEEEC-----------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 455667777775 1346678999999999997 9999999999776 34666666553
Q ss_pred HHHHHHHHhhhHHHHHHHHHH----HHHhhhhhh-hHHHhhcCCCcC--CCCCCchhhHHHhHHHHcCCCcccccccCCC
Q psy17516 101 AKLLKVIEELDEKKKIALREA----WLKVNTDFG-SIFSLLLPGSQA--KLSPPAGKDILDGLEVNVAFGGLWKESLGEL 173 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~----~~~v~~~f~-~vf~~L~~g~~~--~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~L 173 (264)
. +..++......++.. +|....... ++++++..+... .............++..+++.+..++++.+|
T Consensus 70 ~-----i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 144 (269)
T PRK11831 70 N-----IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSEL 144 (269)
T ss_pred E-----ccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 2 322221111111211 111110001 334433211000 0111111123456677889988889999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEee
Q psy17516 174 SGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFV 250 (264)
Q Consensus 174 SGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~ 250 (264)
|||||||++||++++ .+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |+
T Consensus 145 SgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~--l~ 218 (269)
T PRK11831 145 SGGMARRAALARAIA----LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYI--VA 218 (269)
T ss_pred CHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEE--EE
Confidence 999999999998864 68899999999999999999999999999864 57899999997765 67999987 66
Q ss_pred CCeE
Q psy17516 251 DGNS 254 (264)
Q Consensus 251 ~g~s 254 (264)
+|..
T Consensus 219 ~G~i 222 (269)
T PRK11831 219 DKKI 222 (269)
T ss_pred CCEE
Confidence 8864
No 60
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.6e-29 Score=237.19 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=137.2
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
..+.+++.+.|.. ....+++||+|++||+++ ||||||++++.++ ++.|.+.+++.
T Consensus 28 ~~~~~~~~~~~~~-----------------~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~ 90 (400)
T PRK10070 28 GLSKEQILEKTGL-----------------SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGV 90 (400)
T ss_pred cccHHHHHhhcCC-----------------eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCE
Confidence 4556667777762 123567999999999997 9999999999775 34666766664
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
+ +..++......++ .+.++++||. ++++.+. .+........+..++..+|+.+..+
T Consensus 91 ~-----i~~~~~~~l~~~~------~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 91 D-----IAKISDAELREVR------RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred E-----CCcCCHHHHHHHH------hCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 2 4444332222222 1223344432 2222221 1111111234566777899999899
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccce
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVI 244 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l 244 (264)
+++.+|||||||||+|||+++ .+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||++
T Consensus 160 ~~~~~LSgGq~QRv~LArAL~----~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 160 SYPDELSGGMRQRVGLARALA----INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred cCcccCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 999999999999999998864 78899999999999999999999999998753 67899999998765 679999
Q ss_pred eEEEeeCCeE
Q psy17516 245 FRTKFVDGNS 254 (264)
Q Consensus 245 ~~v~~~~g~s 254 (264)
+- |++|..
T Consensus 236 ~v--L~~G~i 243 (400)
T PRK10070 236 AI--MQNGEV 243 (400)
T ss_pred EE--EECCEE
Confidence 88 668854
No 61
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=2e-29 Score=217.38 Aligned_cols=178 Identities=21% Similarity=0.202 Sum_probs=121.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHH-HHHHHHHHHHhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKK-KIALREAWLKVNTD-- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~-~~~~~~~~~~v~~~-- 128 (264)
.+++++||++++||+++ ||||||+++++++. +.|++.+.+.. +..+.... ....++....+.+.
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKE-----TPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE-----ccccchhhHHHHHHhCeeEEecchh
Confidence 45678999999999997 99999999998753 45666665542 22121111 11111111001111
Q ss_pred -h--hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 129 -F--GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 129 -f--~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
| .++++++..+.. .........+.+..++..+++.+..++.+.+|||||+||++|||+++ .+|+++||||||
T Consensus 87 ~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~----~~p~llllDEPt 162 (206)
T TIGR03608 87 LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL----KDPPLILADEPT 162 (206)
T ss_pred hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCc
Confidence 1 123332211100 00111111234566777889988889999999999999999998864 789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccceeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
++||+.++..+.++|+++.+ +.++|+|||+....+.||+++-
T Consensus 163 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~ 205 (206)
T TIGR03608 163 GSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIE 205 (206)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEe
Confidence 99999999999999998764 6789999999998889998764
No 62
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=2.9e-30 Score=236.86 Aligned_cols=195 Identities=20% Similarity=0.180 Sum_probs=136.6
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~ 99 (264)
.+.+++++.++|.. ...++++||+|++||+++ ||||||+++++++ ++.|.+.+.+
T Consensus 6 ~~i~i~~l~k~~~~-----------------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G 68 (306)
T PRK13537 6 APIDFRNVEKRYGD-----------------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG 68 (306)
T ss_pred ceEEEEeEEEEECC-----------------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 34567778888862 245677999999999998 9999999999775 4566776666
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH----HHHhhhhh-hhHHHhhcC-CCcCCCCCCchhhHHHhHHHHcCCCcccccccCCC
Q psy17516 100 RAKLLKVIEELDEKKKIALREA----WLKVNTDF-GSIFSLLLP-GSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGEL 173 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~----~~~v~~~f-~~vf~~L~~-g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~L 173 (264)
.+ +..... ..++. +|...... .++.+++.. +........+.......++..+++.+..++++..|
T Consensus 69 ~~-----~~~~~~----~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 139 (306)
T PRK13537 69 EP-----VPSRAR----HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGEL 139 (306)
T ss_pred Ee-----cccchH----HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhC
Confidence 42 222111 12211 11111100 133333211 11001111112234567777899998899999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeC
Q psy17516 174 SGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVD 251 (264)
Q Consensus 174 SGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~ 251 (264)
|||||||++||+++ +.+|+++||||||+|||+.++..+.++|+++.+ +.++|++||+...+ +.||+++- |.+
T Consensus 140 S~G~~qrl~la~aL----~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~i--l~~ 213 (306)
T PRK13537 140 SGGMKRRLTLARAL----VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCV--IEE 213 (306)
T ss_pred CHHHHHHHHHHHHH----hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE--EEC
Confidence 99999999999876 478999999999999999999999999999864 67899999998876 57999987 567
Q ss_pred CeE
Q psy17516 252 GNS 254 (264)
Q Consensus 252 g~s 254 (264)
|..
T Consensus 214 G~i 216 (306)
T PRK13537 214 GRK 216 (306)
T ss_pred CEE
Confidence 755
No 63
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=3.2e-29 Score=235.92 Aligned_cols=188 Identities=18% Similarity=0.211 Sum_probs=139.3
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~ 100 (264)
+++++++.++|.. ..+.+++||++++||+++ |||||||++++++. +.|.+.+.+.
T Consensus 14 ~L~l~~l~~~~~~-----------------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~ 76 (375)
T PRK09452 14 LVELRGISKSFDG-----------------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ 76 (375)
T ss_pred eEEEEEEEEEECC-----------------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 3566777777762 235667999999999997 99999999998764 4566777664
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
. +..+...+ +.++++||. +||..++. ....+....+..++..+++.+..+
T Consensus 77 ~-----i~~~~~~~------------r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 139 (375)
T PRK09452 77 D-----ITHVPAEN------------RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ 139 (375)
T ss_pred E-----CCCCCHHH------------CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh
Confidence 2 33332211 223444443 33332221 111111234567777889999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-Hhhccce
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVI 244 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l 244 (264)
++|.+|||||||||||||+++ .+|+++|||||+++||...+..+.+.|+++.+ +.++|+|||+... +..||++
T Consensus 140 ~~p~~LSgGq~QRVaLARaL~----~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri 215 (375)
T PRK09452 140 RKPHQLSGGQQQRVAIARAVV----NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215 (375)
T ss_pred CChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999998875 68899999999999999999999999998864 6899999999886 5789999
Q ss_pred eEEEeeCCeEEE
Q psy17516 245 FRTKFVDGNSNV 256 (264)
Q Consensus 245 ~~v~~~~g~s~i 256 (264)
+- |++|...-
T Consensus 216 ~v--l~~G~i~~ 225 (375)
T PRK09452 216 VV--MRDGRIEQ 225 (375)
T ss_pred EE--EECCEEEE
Confidence 98 77887643
No 64
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-29 Score=235.13 Aligned_cols=195 Identities=19% Similarity=0.163 Sum_probs=136.0
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc------cchhHHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM------TKKSIVE 97 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~------~~~~~~~ 97 (264)
++++++.+.|..+... ....+++||+|++||+++ ||||||+++++++. +.|.+.+
T Consensus 4 L~v~~l~~~y~~~~~~-------------~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~ 70 (330)
T PRK15093 4 LDIRNLTIEFKTSDGW-------------VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRF 70 (330)
T ss_pred EEEeeeEEEEeCCCCC-------------EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEE
Confidence 4556777777532111 235667999999999998 99999999997764 3566666
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh----hcCCCcC--------------C-C-CC-CchhhHHHhH
Q psy17516 98 SDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL----LLPGSQA--------------K-L-SP-PAGKDILDGL 156 (264)
Q Consensus 98 ~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~----L~~g~~~--------------~-l-~~-~~~~~~~~~l 156 (264)
.+.+ +..++......++. +.+++|||. +.+..+. . + .. ......+..+
T Consensus 71 ~g~~-----i~~~~~~~~~~~~~------~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (330)
T PRK15093 71 DDID-----LLRLSPRERRKLVG------HNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIEL 139 (330)
T ss_pred CCEE-----CCcCCHHHHHHHhC------CCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 6642 44444433333321 122333331 1111000 0 0 00 1112345678
Q ss_pred HHHcCCCc---ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEE
Q psy17516 157 EVNVAFGG---LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIV 231 (264)
Q Consensus 157 ~~~v~l~~---~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiV 231 (264)
+..+|+.+ ..++++.+|||||+|||+||++++ .+|+++|+||||++||+.++..+.++|+++.+ +.++|+|
T Consensus 140 L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~----~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~i 215 (330)
T PRK15093 140 LHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA----NQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI 215 (330)
T ss_pred HHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH----CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 88899975 357899999999999999998864 68899999999999999999999999999874 6899999
Q ss_pred EeCcchH-hhccceeEEEeeCCeE
Q psy17516 232 SLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 232 TH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|||...+ +.||+++- |.+|..
T Consensus 216 tHdl~~v~~~~dri~v--m~~G~i 237 (330)
T PRK15093 216 SHDLQMLSQWADKINV--LYCGQT 237 (330)
T ss_pred ECCHHHHHHhCCEEEE--EECCEE
Confidence 9998887 67999987 668865
No 65
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.96 E-value=2.1e-29 Score=219.19 Aligned_cols=180 Identities=17% Similarity=0.122 Sum_probs=126.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++|++++ ||||||+++++++ +.+|.+.+.+.. +.... ..++.....+.+.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~----~~~~~~i~~~~q~~~~ 89 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD-----VVKEP----AEARRRLGFVSDSTGL 89 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEE-----cccCH----HHHHhhEEEecCCccc
Confidence 46778999999999997 9999999999776 346666665542 22111 1122111111111
Q ss_pred hh--hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 129 FG--SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 129 f~--~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
|. ++++++..... ......+....+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||+
T Consensus 90 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~illlDEPt~ 165 (218)
T cd03266 90 YDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV----HDPPVLLLDEPTT 165 (218)
T ss_pred CcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCc
Confidence 11 33333211000 00111111234566777889988889999999999999999998864 7889999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- |.+|..
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~--l~~G~i 214 (218)
T cd03266 166 GLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVV--LHRGRV 214 (218)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEE--EECCEE
Confidence 9999999999999998864 67999999998865 67999988 668864
No 66
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=1.1e-29 Score=224.47 Aligned_cols=185 Identities=17% Similarity=0.174 Sum_probs=128.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHH--HHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIA--LREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~--~~~~~~~v~~~f 129 (264)
.+++++||++++||+++ ||||||+++++++ +..|++.+.+.. +...+...... +--.++......
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-----~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD-----LTGLPEHQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCee-----cCCCCHHHHHhcCeeEeccccccCC
Confidence 46778999999999997 9999999999775 456666666642 33322211110 000111111000
Q ss_pred h-hHHHhhcCCCcCC------C---CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 130 G-SIFSLLLPGSQAK------L---SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 130 ~-~vf~~L~~g~~~~------l---~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
+ ++++++..+.... + ........+..++..+|+.+..++++.+|||||+||++|||++ +.+|+++|
T Consensus 91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral----~~~p~~ll 166 (242)
T TIGR03411 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL----MQDPKLLL 166 (242)
T ss_pred CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH----hcCCCEEE
Confidence 1 3444332111000 0 0011123456777788998888999999999999999999876 47889999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- +++|...
T Consensus 167 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~g~~~ 221 (242)
T TIGR03411 167 LDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTV--LHQGSVL 221 (242)
T ss_pred ecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE--EECCeEE
Confidence 999999999999999999999987778999999998877 57999988 5687653
No 67
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=1.4e-29 Score=244.56 Aligned_cols=196 Identities=22% Similarity=0.236 Sum_probs=145.7
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhcc------chhHH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT------KKSIV 96 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~------~~~~~ 96 (264)
+++++++...|....-.+. ..++|||+|.+||+++ |||||+.+.++++.+ .|+++
T Consensus 5 lL~V~nL~v~~~~~~~~~~-------------~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~ 71 (539)
T COG1123 5 LLEVENLTVEFATDGGRVP-------------AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71 (539)
T ss_pred eEEEeceEEEEecCCccee-------------eeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE
Confidence 5566777777774411122 3456999999999998 999999988766432 35666
Q ss_pred HhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh----hcCCCcCC------------CCCCchhhHHHhHHHHc
Q psy17516 97 ESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL----LLPGSQAK------------LSPPAGKDILDGLEVNV 160 (264)
Q Consensus 97 ~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~----L~~g~~~~------------l~~~~~~~~~~~l~~~v 160 (264)
+++++ +..++...+..+| ...++.|||. +-|..+.+ ....+..+.+..++..|
T Consensus 72 ~~g~d-----l~~l~~~~~r~~r------g~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V 140 (539)
T COG1123 72 LDGRD-----LLGLSEREMRKLR------GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV 140 (539)
T ss_pred ECCcc-----hhcCCHHHHHHhc------cccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc
Confidence 77653 6667766665555 3556677764 22211110 01112334567888899
Q ss_pred CCCccccc--ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcc
Q psy17516 161 AFGGLWKE--SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEG 236 (264)
Q Consensus 161 ~l~~~~~~--~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~ 236 (264)
|+++...+ +|++|||||||||.||+++| .+|+++|+||||.+||+..+..|+++|+++.+ +.++|+||||.+
T Consensus 141 gl~~~~~~~~yPheLSGG~rQRv~iAmALa----~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 141 GLPDPERRDRYPHQLSGGMRQRVMIAMALA----LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred CCCChhhhccCCcccCchHHHHHHHHHHHh----CCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 99876655 99999999999999988765 68899999999999999999999999999874 788999999999
Q ss_pred hH-hhccceeEEEeeCCeE
Q psy17516 237 MF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 237 ~~-~~ad~l~~v~~~~g~s 254 (264)
+. +.||+++= |.+|..
T Consensus 217 Vva~~aDrv~V--m~~G~i 233 (539)
T COG1123 217 VVAELADRVVV--MYKGEI 233 (539)
T ss_pred HHHHhcCeEEE--EECCEE
Confidence 76 67999987 778865
No 68
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.1e-30 Score=240.97 Aligned_cols=186 Identities=22% Similarity=0.205 Sum_probs=137.8
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~ 100 (264)
+++++++.+.|.. ...++++||++++||+++ |||||||++++++. +.|.+.+.+.
T Consensus 19 ~l~l~~v~~~~~~-----------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~ 81 (377)
T PRK11607 19 LLEIRNLTKSFDG-----------------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV 81 (377)
T ss_pred eEEEEeEEEEECC-----------------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 4556677777751 235567999999999997 99999999998764 4666766664
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
. +..+... + +.++++||. +||+.++. ....+....+.+++..+++.+..+
T Consensus 82 ~-----i~~~~~~-----~-------r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~ 144 (377)
T PRK11607 82 D-----LSHVPPY-----Q-------RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK 144 (377)
T ss_pred E-----CCCCCHH-----H-------CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc
Confidence 2 3332211 1 234555553 44443321 111112234567888899999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-Hhhccce
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVI 244 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l 244 (264)
+++.+|||||||||||||+++ .+|+++|||||+++||...+..+.+.|+++.+ +.++|+|||+... +..||++
T Consensus 145 ~~~~~LSgGq~QRVaLARAL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri 220 (377)
T PRK11607 145 RKPHQLSGGQRQRVALARSLA----KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220 (377)
T ss_pred CChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 999999999999999998875 68899999999999999999999998887653 6899999999886 5789999
Q ss_pred eEEEeeCCeE
Q psy17516 245 FRTKFVDGNS 254 (264)
Q Consensus 245 ~~v~~~~g~s 254 (264)
+- |.+|..
T Consensus 221 ~v--l~~G~i 228 (377)
T PRK11607 221 AI--MNRGKF 228 (377)
T ss_pred EE--EeCCEE
Confidence 88 668854
No 69
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.96 E-value=4.1e-30 Score=235.30 Aligned_cols=180 Identities=17% Similarity=0.091 Sum_probs=126.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||+|++|++++ ||||||+++++++ ++.|++.+.+.. +.... ..++.....+.+..
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~----~~~~~~i~~v~q~~~~ 88 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP-----VPSRA----RLARVAIGVVPQFDNL 88 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----CcccH----HHHhhcEEEEeccccC
Confidence 45678999999999998 9999999999775 346666666542 21111 11121111111111
Q ss_pred ---hhHHHhhc-CCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 130 ---GSIFSLLL-PGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 130 ---~~vf~~L~-~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
.++++++. .+.............+..++..+++++..++++.+||||||||++||++++ .+|+++||||||+
T Consensus 89 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~ 164 (303)
T TIGR01288 89 DPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALI----NDPQLLILDEPTT 164 (303)
T ss_pred CcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCc
Confidence 13444332 111001111111234556777889998889999999999999999998864 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||+.++..+.++|+++++ +.++|++||+...+ +.||+++- |.+|..
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~--l~~G~i 213 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCV--LESGRK 213 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999864 67899999998876 57999988 668864
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.96 E-value=1.2e-28 Score=215.91 Aligned_cols=183 Identities=21% Similarity=0.181 Sum_probs=126.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||++++||+++ ||||||+++++++. .+|++.+.+.. +...+. ....++.....+.
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~-----~~~~~~-~~~~~~~~i~~~~ 87 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD-----IYDLDV-DVLELRRRVGMVF 87 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEE-----hhhcch-HHHHHHhhEEEEe
Confidence 46778999999999997 99999999997753 35666666542 333221 0111221111111
Q ss_pred hhh----hhHHHhhcCCCcC-CCCCCc-hhhHHHhHHHHcCCCcccccc--cCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 127 TDF----GSIFSLLLPGSQA-KLSPPA-GKDILDGLEVNVAFGGLWKES--LGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 127 ~~f----~~vf~~L~~g~~~-~l~~~~-~~~~~~~l~~~v~l~~~~~~~--~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
++. .++++++..+... ...... ....+..++..+|+.+..++. +.+||||||||++||++++ .+|+++
T Consensus 88 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~----~~p~ll 163 (227)
T cd03260 88 QKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA----NEPEVL 163 (227)
T ss_pred cCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh----cCCCEE
Confidence 111 2344443221110 111111 123456677788998776666 5999999999999998864 688999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||||||++||+.++..+.++|++++++.++|+|||+...+ ..||+++- +++|..
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~G~i 218 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAF--LLNGRL 218 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEE--EeCCEE
Confidence 9999999999999999999999987557899999998865 57999988 668864
No 71
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.96 E-value=6.3e-29 Score=230.36 Aligned_cols=196 Identities=21% Similarity=0.217 Sum_probs=138.2
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhcc-----chhHHH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-----KKSIVE 97 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-----~~~~~~ 97 (264)
+++++++.+.|..+... ..+.+++||+|++||+++ ||||||+++++++.. .|.+.+
T Consensus 12 ~L~i~~l~~~~~~~~~~-------------~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~ 78 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGD-------------VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF 78 (330)
T ss_pred eEEEeCeEEEEecCCCC-------------EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE
Confidence 45567777777532110 235567999999999998 999999999977642 566666
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh----hcCCCcC------------CCCCCchhhHHHhHHHHcC
Q psy17516 98 SDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL----LLPGSQA------------KLSPPAGKDILDGLEVNVA 161 (264)
Q Consensus 98 ~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~----L~~g~~~------------~l~~~~~~~~~~~l~~~v~ 161 (264)
++.+ +..++......++. ..+++|||. +.+..+. .....+....+..++..++
T Consensus 79 ~G~~-----i~~~~~~~~~~~r~------~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg 147 (330)
T PRK09473 79 NGRE-----ILNLPEKELNKLRA------EQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK 147 (330)
T ss_pred CCEE-----CCcCCHHHHHHHhc------CCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 6643 55555444333431 233344442 1121111 0111111234566777889
Q ss_pred CCc---ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcc
Q psy17516 162 FGG---LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEG 236 (264)
Q Consensus 162 l~~---~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~ 236 (264)
+++ ..++++.+|||||+|||+||++++ .+|+++|+||||++||..++..++++|+++.+ +.++|+||||..
T Consensus 148 L~~~~~~~~~~p~~LSgG~~QRv~IArAL~----~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 148 MPEARKRMKMYPHEFSGGMRQRVMIAMALL----CRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred CCChHHHhcCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 875 346799999999999999998875 68899999999999999999999999999865 678999999998
Q ss_pred hH-hhccceeEEEeeCCeE
Q psy17516 237 MF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 237 ~~-~~ad~l~~v~~~~g~s 254 (264)
.+ ..||+++- |.+|..
T Consensus 224 ~~~~~~Dri~v--m~~G~i 240 (330)
T PRK09473 224 VVAGICDKVLV--MYAGRT 240 (330)
T ss_pred HHHHhCCEEEE--EECCEE
Confidence 87 47999987 668865
No 72
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.7e-29 Score=225.30 Aligned_cols=185 Identities=18% Similarity=0.152 Sum_probs=130.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHH-HHHHHHHHHhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKK-IALREAWLKVNTD-F 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~-~~~~~~~~~v~~~-f 129 (264)
.+++++||++++||+++ ||||||+++++++ +++|.+.+.+.. +...+.... ..+.-.+|..... +
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE-----VNAENEKWVRSKVGLVFQDPDDQVF 93 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEE-----CCCCCHHHHHhhEEEEecChhhhhc
Confidence 46778999999999998 9999999999775 456777666642 322221111 0010012221111 1
Q ss_pred -hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 130 -GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 130 -~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
.++++++..+... ..........+..++..+++.+..++++.+|||||+||++||++++ .+|+++||||||++|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~----~~p~llllDEPt~~L 169 (274)
T PRK13647 94 SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLA----MDPDVIVLDEPMAYL 169 (274)
T ss_pred cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCcCC
Confidence 2445544322111 1111112234567777889988899999999999999999998875 788999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 208 DLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|+.++..+.++|+++++ +.++|+|||+...+ +.||+++- |.+|...
T Consensus 170 D~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~--l~~G~i~ 217 (274)
T PRK13647 170 DPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIV--LKEGRVL 217 (274)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999998864 68999999999876 68999988 6688653
No 73
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.6e-29 Score=227.50 Aligned_cols=184 Identities=23% Similarity=0.173 Sum_probs=129.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH----HHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE----AWLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~~~v~~ 127 (264)
..++++||+|++||+++ ||||||+++++++ +..|++.+.+.. +..... ....++. .+|....
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~-~~~~~~~~ig~v~q~~~~ 94 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVD-----ITDKKV-KLSDIRKKVGLVFQYPEY 94 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEE-----CCCcCc-cHHHHhhceEEEecCchh
Confidence 46678999999999998 9999999999775 346666666642 322110 0011221 1222211
Q ss_pred h-h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC--cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 128 D-F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG--GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 128 ~-f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~--~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
. | .++++++..+.. ......+..+.+..++..+|+. +..++++.+||||||||++||++++ .+|+++||||
T Consensus 95 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~----~~P~llllDE 170 (287)
T PRK13637 95 QLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA----MEPKILILDE 170 (287)
T ss_pred ccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH----cCCCEEEEEC
Confidence 1 1 244444432211 1111111223456777788997 6788999999999999999998864 6889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++- |++|...
T Consensus 171 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~--l~~G~i~ 224 (287)
T PRK13637 171 PTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIV--MNKGKCE 224 (287)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999864 67899999998876 67999998 6688654
No 74
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.96 E-value=2.7e-29 Score=218.75 Aligned_cols=180 Identities=18% Similarity=0.093 Sum_probs=125.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++||+++ ||||||+++++++ ++.|.+.+.+.. +.... ..++.....+.++
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~----~~~~~~i~~v~q~~~~ 86 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYS-----IRTDR----KAARQSLGYCPQFDAL 86 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe-----cccch----HHHhhhEEEecCcCCc
Confidence 46778999999999997 9999999999775 446666665532 22111 1111111011111
Q ss_pred h--hhHHHhhcCCC-cCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 129 F--GSIFSLLLPGS-QAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 129 f--~~vf~~L~~g~-~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
+ .++.+++.... ............+..++..+++.+..++++.+|||||+||++|||+++ .+|+++||||||+
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~llllDEP~~ 162 (220)
T cd03263 87 FDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALI----GGPSVLLLDEPTS 162 (220)
T ss_pred cccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHh----cCCCEEEECCCCC
Confidence 1 12333221100 000111111234556777889988888999999999999999998864 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||+.+...+.++|++++++.++|++||+...+ +.||+++- +++|..
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~g~i 210 (220)
T cd03263 163 GLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAI--MSDGKL 210 (220)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEE--EECCEE
Confidence 999999999999999987778899999999877 57999988 668864
No 75
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=7.9e-29 Score=217.48 Aligned_cols=184 Identities=21% Similarity=0.195 Sum_probs=126.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHH--HHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIA--LREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~--~~~~~~~v~~~f 129 (264)
.+++++||++++|++++ ||||||+++++++ ++.|.+.+++.. +...+.....+ +.-.+|......
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD-----ITKLPMHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe-----cccCCHhHHHhccEEEecCCccccc
Confidence 46678999999999997 9999999999775 345666665542 22222111100 000111110000
Q ss_pred h-hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 130 G-SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 130 ~-~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
. ++++++..+.. ...........+.+++..+++.+..++.+.+||||||||++||++++ .+|+++||||||++|
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~L 164 (232)
T cd03218 89 KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALA----TNPKFLLLDEPFAGV 164 (232)
T ss_pred cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccC
Confidence 1 33333221110 00111111224567777889988889999999999999999998864 789999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CCeEEEEEeCcc-hHhhccceeEEEeeCCeE
Q psy17516 208 DLSHTQNIGQMLKRHFK-TSQFIIVSLKEG-MFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~-~~q~IiVTH~~~-~~~~ad~l~~v~~~~g~s 254 (264)
|+.++..+.++|+++.+ +.++|++||+.. +.+.||+++- |++|..
T Consensus 165 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~G~i 211 (232)
T cd03218 165 DPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYI--IYEGKV 211 (232)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--EECCeE
Confidence 99999999999998865 678999999986 5578999988 668865
No 76
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.96 E-value=7.1e-29 Score=216.83 Aligned_cols=184 Identities=22% Similarity=0.191 Sum_probs=125.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
.+++++||++++||+++ ||||||+++++++ +..|.+.+.+.. +...+......++.. +|....
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD-----LLKLSRRLRKIRRKEIQMVFQDPMS 93 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-----ccccchhhHHHhhccEEEEecCchh
Confidence 46678999999999998 9999999999775 345666665532 333321111122211 111100
Q ss_pred hh---hhHHHhhcCCCcC-CCCCCch-hhH-HHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 128 DF---GSIFSLLLPGSQA-KLSPPAG-KDI-LDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 128 ~f---~~vf~~L~~g~~~-~l~~~~~-~~~-~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
.+ .++++++..+... ....... ... ...++..+++. ...++++.+||||||||++|||++ +.+|+++||
T Consensus 94 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral----~~~p~lllL 169 (228)
T cd03257 94 SLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL----ALNPKLLIA 169 (228)
T ss_pred hcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH----hcCCCEEEe
Confidence 00 1333332211000 0001111 111 23566778885 577899999999999999999886 478999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++|+++++ +.++|+|||+...+. .||+++- +++|..
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~G~i 224 (228)
T cd03257 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAV--MYAGKI 224 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE--EeCCEE
Confidence 999999999999999999999864 678999999998876 7999998 668864
No 77
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.3e-29 Score=216.83 Aligned_cols=179 Identities=19% Similarity=0.159 Sum_probs=123.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||+|++|++++ ||||||+++++++ +..|.+.+.+.. +.... ..+...+|... -|
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~----~~i~~v~q~~~-~~~~ 87 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP-----VTGPG----PDRGYVFQQDA-LLPW 87 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----Ccccc----CcEEEEecccc-cccC
Confidence 46678999999999997 9999999999776 345666555532 21110 00000011110 01
Q ss_pred hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCC
Q psy17516 130 GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208 (264)
Q Consensus 130 ~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD 208 (264)
.++++++..+... ........+.+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||++||
T Consensus 88 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~----~~p~lllLDEPt~~LD 163 (220)
T cd03293 88 LTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALA----VDPDVLLLDEPFSALD 163 (220)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEECCCCCCCC
Confidence 1333332211100 1111111234566777889988888999999999999999998875 6889999999999999
Q ss_pred HHHHHHHHHHHHHhh-c-CCeEEEEEeCcch-HhhccceeEEEee--CCeE
Q psy17516 209 LSHTQNIGQMLKRHF-K-TSQFIIVSLKEGM-FSNANVIFRTKFV--DGNS 254 (264)
Q Consensus 209 ~~~~~~i~~ll~~~~-~-~~q~IiVTH~~~~-~~~ad~l~~v~~~--~g~s 254 (264)
+.++..+.++|+++. + +.++|+|||+... ...||+++- |+ +|..
T Consensus 164 ~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~~~G~i 212 (220)
T cd03293 164 ALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV--LSARPGRI 212 (220)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE--EECCCCEE
Confidence 999999999999874 3 6789999999885 468999987 66 5754
No 78
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.95 E-value=4.9e-29 Score=233.68 Aligned_cols=173 Identities=18% Similarity=0.197 Sum_probs=129.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cc--hhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TK--KSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~--~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
..++++||++++||+++ |||||||++++++. +. |.+.+.+.. +......+ +.+
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~-----~~~~~~~~------------r~i 81 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD-----LTHAPPHK------------RGL 81 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEE-----CCCCCHHH------------CCE
Confidence 35678999999999997 99999999998753 45 666666642 32222111 223
Q ss_pred hhHHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 GSIFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 ~~vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+++||. ++|..+.. ....+....+..++..+++.+..++++.+|||||||||||||+++ .+|+
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~----~~P~ 157 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA----IEPD 157 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh----cCCC
Confidence 444442 33332211 111112234667788899999999999999999999999998875 6899
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhc---CCeEEEEEeCcch-HhhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFK---TSQFIIVSLKEGM-FSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~---~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+..+..+.+.|+++.+ +.++|+|||+... +..||+++- |++|...
T Consensus 158 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~v--l~~G~i~ 218 (362)
T TIGR03258 158 VLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGI--MKDGRLA 218 (362)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999999998765 5689999999876 578999988 6788653
No 79
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.95 E-value=1.2e-29 Score=240.60 Aligned_cols=186 Identities=18% Similarity=0.237 Sum_probs=133.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHH-HHHHHHHhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIA-LREAWLKVNTDF 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~-~~~~~~~v~~~f 129 (264)
+.+++++||+|++||+++ |||||||+++.++ +.+|.+.+.+.. +..++.....+ +--.+|.....+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~-----i~~~~~~~~~~~ig~v~q~~~l~~ 90 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDD-----VEALSARAASRRVASVPQDTSLSF 90 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEE-----cCcCCHHHHhcceEEEccCCCCCC
Confidence 346678999999999997 9999999999775 446667766643 33333221111 000122221112
Q ss_pred -hhHHHhhcCCCcCC---CC--CCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 130 -GSIFSLLLPGSQAK---LS--PPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 130 -~~vf~~L~~g~~~~---l~--~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
.++++++..+.... +. .....+.+..++..+++.+..++++.+||||||||++|||+++ ++|+++|||||
T Consensus 91 ~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~----~~P~iLLLDEP 166 (402)
T PRK09536 91 EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA----QATPVLLLDEP 166 (402)
T ss_pred CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECC
Confidence 24555554333211 11 1112245677888899999999999999999999999998864 79999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|++||+.++..++++|+++++ +.++|++||+...+ +.||+++- |.+|...
T Consensus 167 tsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~--l~~G~iv 218 (402)
T PRK09536 167 TASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVL--LADGRVR 218 (402)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999874 67899999998887 67999988 5677653
No 80
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.6e-29 Score=219.23 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=125.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+++++||++++||+++ ||||||+++++++ +..|++.+.+.. +.......+..+.-.+|...... -
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD-----VVREPREVRRRIGIVFQDLSVDDEL 88 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe-----cCcChHHHhhcEEEecCCccccccC
Confidence 46778999999999997 9999999999775 345666665532 21111000000000111111000 1
Q ss_pred hHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++++++..+... .....+....+..++..+++.+..++++.+||||||||++||+++ +.+|+++||||||++||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al----~~~p~llllDEPt~~LD~ 164 (220)
T cd03265 89 TGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSL----VHRPEVLFLDEPTIGLDP 164 (220)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH----hcCCCEEEEcCCccCCCH
Confidence 233332111000 011111223456777788998888999999999999999999886 478899999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.++..+.++|+++.+ +.++|+|||+...+ ..||+++- +++|..
T Consensus 165 ~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~--l~~G~i 210 (220)
T cd03265 165 QTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAI--IDHGRI 210 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EeCCEE
Confidence 999999999998764 57899999998876 57999988 678865
No 81
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.3e-29 Score=215.81 Aligned_cols=179 Identities=20% Similarity=0.136 Sum_probs=125.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
.+.+++||++++| +++ ||||||+++++++ +..|.+.+.+.. +.... ..++.. +|....
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~----~~~~~~i~~~~q~~~~ 83 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQD-----VLKQP----QKLRRRIGYLPQEFGV 83 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCc-----cccch----HHHHhheEEecCCCcc
Confidence 4667899999999 887 9999999999775 346666666542 32221 111211 111110
Q ss_pred hhh-hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 128 DFG-SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 128 ~f~-~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
... ++++++..... ......+.......++..+++.+..++++.+||||||||++|||+++ .+|+++||||||+
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~llllDEPt~ 159 (211)
T cd03264 84 YPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALV----GDPSILIVDEPTA 159 (211)
T ss_pred cccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcc
Confidence 001 33333211000 00111111234566777889988888999999999999999998864 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||+.++..+.++|++++++.++|+|||+...+ +.||+++- |++|..
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~--l~~g~i 207 (211)
T cd03264 160 GLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAV--LNKGKL 207 (211)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999987778899999998876 57999987 668854
No 82
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=3e-29 Score=222.65 Aligned_cols=184 Identities=20% Similarity=0.164 Sum_probs=125.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhH-----HHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDE-----KKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~-----~~~~~~~~~~~~v~ 126 (264)
.+++++||++++|++++ ||||||+++++++. ..|.+.+.+.. +..... .....++.....+.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDIT-----IDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE-----ccccccccchhhHHHHhhhhEEEEe
Confidence 46678999999999997 99999999997753 35555555432 211100 00111221111111
Q ss_pred hh---h--hhHHHhhcCCCc--CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 127 TD---F--GSIFSLLLPGSQ--AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 127 ~~---f--~~vf~~L~~g~~--~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
+. | .++++++..+.. ...........+..++..+|+.+..++++.+|||||+||++||++++ .+|+++|
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~----~~p~lll 167 (250)
T PRK11264 92 QNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA----MRPEVIL 167 (250)
T ss_pred cCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh----cCCCEEE
Confidence 11 1 134444321110 00111111234566777889988888999999999999999998864 6889999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|||||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |.+|..
T Consensus 168 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~--l~~G~i 222 (250)
T PRK11264 168 FDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIF--MDQGRI 222 (250)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE--EECCEE
Confidence 9999999999999999999998865 67899999998876 57999988 668754
No 83
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=4.5e-29 Score=228.29 Aligned_cols=180 Identities=14% Similarity=0.071 Sum_probs=126.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
..++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +.... ..++.....+.+..
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~----~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD-----VVREP----RKVRRSIGIVPQYASV 77 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----cccCH----HHHHhhcEEecCCCCC
Confidence 45678999999999997 9999999999775 456666666642 22111 11121111111111
Q ss_pred --h-hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 130 --G-SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 130 --~-~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
. ++.+++..... ..............++..+++.+..++++.+||||||||++||+++ +.+|+++||||||+
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al----~~~p~lllLDEPt~ 153 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASL----IHQPDVLFLDEPTT 153 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHH----hcCCCEEEEeCCCc
Confidence 0 23333211100 0111111123456778889999888999999999999999999876 47999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||+.++..+.++|+++.+ +.++|++||+...+ ..||+++- |.+|..
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~--l~~G~i 202 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAI--IDHGRI 202 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999864 67899999998876 57999987 567764
No 84
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-29 Score=227.11 Aligned_cols=183 Identities=17% Similarity=0.171 Sum_probs=125.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++|++++ ||||||+++++++ +..|.+.+++.. +. ........++.....+.+.
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~-~~~~~~~~~~~~i~~v~q~~~~ 88 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKP-----LD-YSKRGLLALRQQVATVFQDPEQ 88 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEE-----cc-cccCCHHHHHhheEEEeeChhh
Confidence 46778999999999997 9999999999775 345666666542 21 0000011112111111111
Q ss_pred --h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 129 --F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 129 --f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
+ ..+.+++..+.. ..............++..+++.+..++++.+||||||||++||++++ .+|+++||||||
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~----~~p~lllLDEPt 164 (271)
T PRK13638 89 QIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV----LQARYLLLDEPT 164 (271)
T ss_pred ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH----cCCCEEEEeCCc
Confidence 1 123332211100 01111111233456777889988889999999999999999998864 789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |.+|..
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~--l~~G~i 214 (271)
T PRK13638 165 AGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYV--LRQGQI 214 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999864 67899999998877 67999988 668764
No 85
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.95 E-value=1.6e-28 Score=220.51 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=127.5
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+.+++++||+|++||+++ ||||||+++++++ +..|++.+.+.. +..++......++.....+.+.
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~~~~~~~~~~~i~~v~q~~~ 98 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQD-----LYQLDRKQRRAFRRDVQLVFQDSP 98 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----ccccCHHHHHHHhhceEEEecChh
Confidence 356778999999999998 9999999999776 345666666532 3333322211222111111111
Q ss_pred --h---hhHHHhhcCCCc--CCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 129 --F---GSIFSLLLPGSQ--AKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 129 --f---~~vf~~L~~g~~--~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
+ .++++++..+.. ...........+..++..+++. ...++++.+|||||+||++|||+++ .+|+++||
T Consensus 99 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~----~~p~illL 174 (265)
T TIGR02769 99 SAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALA----VKPKLIVL 174 (265)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 1 133333211000 0111111223456677788996 6778899999999999999998864 78999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
||||++||+.+...+.++|+++.+ +.++|+|||+...+. .||+++- +.+|..
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~--l~~G~i 229 (265)
T TIGR02769 175 DEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAV--MDKGQI 229 (265)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEE--EeCCEE
Confidence 999999999999999999998764 678999999998774 7999988 567754
No 86
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.95 E-value=3.7e-29 Score=220.78 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=123.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----ccchhHHHhhHHHHHHHHHhhhHHHHHH--HHHHHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----MTKKSIVESDRAKLLKVIEELDEKKKIA--LREAWLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~~~~~~~~~~~~~l~~~I~~l~~~~~~~--~~~~~~~v~~ 127 (264)
.+++++||++++||+++ ||||||+++++++ ++.|.+.+.+.. +..++...... +--.+|....
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~i~~v~q~~~~ 88 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQD-----LLELEPDERARAGLFLAFQYPEE 88 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEe-----cCCCCHHHhhccceEeeeccccc
Confidence 46678999999999997 9999999999876 356666666542 32222211110 0001111110
Q ss_pred hh-hhHHHhhcCCCc--CC------CCCCchhhHHHhHHHHcCCC-cccccccC-CCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 128 DF-GSIFSLLLPGSQ--AK------LSPPAGKDILDGLEVNVAFG-GLWKESLG-ELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 128 ~f-~~vf~~L~~g~~--~~------l~~~~~~~~~~~l~~~v~l~-~~~~~~~~-~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
.. .++.+.+..... .. ....+..+....++..++++ +..++.+. +||||||||++||++++ .+|+
T Consensus 89 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~----~~p~ 164 (243)
T TIGR01978 89 IPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL----LEPK 164 (243)
T ss_pred cCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh----cCCC
Confidence 00 022222110000 00 00011123456677788987 45677776 59999999999998864 7899
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhh--ccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSN--ANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~--ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.+ +.++|+|||+...+.. ||+++- |.+|..
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~--l~~G~i 223 (243)
T TIGR01978 165 LAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHV--LLDGRI 223 (243)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEE--EeCCEE
Confidence 9999999999999999999999999864 6789999999998764 799987 667764
No 87
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.4e-29 Score=222.30 Aligned_cols=182 Identities=19% Similarity=0.176 Sum_probs=127.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH----HHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE----AWLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~~~v~~ 127 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+.+.. +...+... .++. .++....
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~--~~~~~i~~~~q~~~~ 89 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED-----ISLLPLHA--RARRGIGYLPQEASI 89 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----CCCCCHHH--HHHhCeEEeccCCcc
Confidence 46778999999999998 9999999999775 345666665532 32222111 1111 1121110
Q ss_pred hh-hhHHHhhcCCCcCC--CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 DF-GSIFSLLLPGSQAK--LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 ~f-~~vf~~L~~g~~~~--l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.. .++++++....... .........+..++..+++.+..++++.+|||||+||++|||+++ .+|+++||||||
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt 165 (241)
T PRK10895 90 FRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA----ANPKFILLDEPF 165 (241)
T ss_pred cccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCc
Confidence 01 14444433221110 111112234566777889988888999999999999999998864 789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch-HhhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM-FSNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++++++.+ +.++|++||+... ...||+++. +++|..
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~--l~~G~i 215 (241)
T PRK10895 166 AGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYI--VSQGHL 215 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEE--EeCCeE
Confidence 99999999999999998764 6789999999864 478999988 668764
No 88
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=2.9e-29 Score=224.62 Aligned_cols=187 Identities=21% Similarity=0.223 Sum_probs=128.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHH-HHHHHHHHHhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKK-IALREAWLKVNTDF- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~-~~~~~~~~~v~~~f- 129 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+.+.. +........ ....-.++.....+
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~-----~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP-----LADWSPAELARRRAVLPQHSSLSFP 90 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE-----cccCCHHHhhhheEEEccCCcCCCC
Confidence 46778999999999997 9999999999776 346666665532 222221111 00000122211111
Q ss_pred hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhc---CCCCEEEeecCCC
Q psy17516 130 GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLF---KPAPLYILDEVDA 205 (264)
Q Consensus 130 ~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~---~~~~illlDEPta 205 (264)
.++++++..+... .............++..+++.+..++.+.+||||||||++||++++. .. .+|+++||||||+
T Consensus 91 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~-~~~~~~~p~lllLDEPt~ 169 (258)
T PRK13548 91 FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ-LWEPDGPPRWLLLDEPTS 169 (258)
T ss_pred CCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc-ccccCCCCCEEEEeCCcc
Confidence 2455544322111 01111122345667778899888899999999999999999988741 00 3789999999999
Q ss_pred CCCHHHHHHHHHHHHHhh-c-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHF-K-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~-~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||+.++..+.++|+++. + +.++|+|||+...+ ..||+++- |.+|..
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i 219 (258)
T PRK13548 170 ALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVL--LHQGRL 219 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEE--EECCEE
Confidence 999999999999999886 3 67899999998876 58999988 668754
No 89
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-28 Score=223.44 Aligned_cols=185 Identities=19% Similarity=0.191 Sum_probs=129.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhH-HHHHHHHHH----HHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDE-KKKIALREA----WLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~-~~~~~~~~~----~~~v~ 126 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|++.+.+.. +..... .....++.. ||...
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~-----i~~~~~~~~~~~~~~~ig~v~q~~~ 95 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDIT-----ITHKTKDKYIRPVRKRIGMVFQFPE 95 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-----CccccccchHHHHHhheEEEecChH
Confidence 46778999999999998 9999999999775 445666666542 221110 011122221 23211
Q ss_pred -hhh-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 127 -TDF-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 127 -~~f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
.-| .++++++..+.. ...........+..++..+|+. +..++++.+||||||||++|||+++ .+|+++||||
T Consensus 96 ~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~----~~p~illlDE 171 (286)
T PRK13646 96 SQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA----MNPDIIVLDE 171 (286)
T ss_pred hccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH----hCCCEEEEEC
Confidence 112 245555432211 1111112223456677788996 6788999999999999999998875 6889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
||++||+.++..+.++|+++.+ +.|+|+|||+...+ +.||+++- |.+|...
T Consensus 172 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~--l~~G~i~ 225 (286)
T PRK13646 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIV--MKEGSIV 225 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999863 68999999998865 68999988 6688654
No 90
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-29 Score=224.21 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=125.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhcc-------chhHHHhhHHHHHHHHHhhhHHHHHHHHHH----H
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-------KKSIVESDRAKLLKVIEELDEKKKIALREA----W 122 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-------~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~ 122 (264)
.+++++||++++||+++ ||||||+++++++.. .|++.+.+.. +...+ .....++.. +
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~-----i~~~~-~~~~~~~~~i~~v~ 94 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN-----IYSNN-FDILELRRKIGMVF 94 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEe-----ccccc-ccHHHHhhceEEEe
Confidence 35678999999999998 999999999977643 5666665532 21111 001112211 1
Q ss_pred HHhhhhhhhHHHhhcCCCcC-CC-CCCchhhHHHhHHHHcCC----CcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 123 LKVNTDFGSIFSLLLPGSQA-KL-SPPAGKDILDGLEVNVAF----GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 123 ~~v~~~f~~vf~~L~~g~~~-~l-~~~~~~~~~~~l~~~v~l----~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
|.......++++++..+... .. ......+.+..++..+++ .+..++.+.+||||||||++|||+++ .+|+
T Consensus 95 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~----~~p~ 170 (254)
T PRK14273 95 QTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA----IEPN 170 (254)
T ss_pred eccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH----cCCC
Confidence 21111113455544322111 00 001112334555566676 34568889999999999999998864 7889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- |.+|...
T Consensus 171 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~--l~~G~i~ 228 (254)
T PRK14273 171 VILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAF--FLNGCIE 228 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999999999987678899999999876 67999987 6688653
No 91
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-29 Score=227.36 Aligned_cols=183 Identities=22% Similarity=0.253 Sum_probs=129.7
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVN 126 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~ 126 (264)
+.+++++||++++||+++ ||||||+++++++ +..|++.+.+.. +...+. ..++.. +|...
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~-----i~~~~~---~~~~~~i~~v~q~~~ 93 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGIT-----ISKENL---KEIRKKIGIIFQNPD 93 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe-----cCcCCH---HHHhcceEEEEeCHH
Confidence 346778999999999997 9999999999776 345666665542 222221 112211 12111
Q ss_pred hhh--hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 127 TDF--GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 127 ~~f--~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
..| .++++++..+... ..........+..++..+++.+..++.+.+|||||+||++|||+++ .+|+++|||||
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~----~~p~lllLDEP 169 (271)
T PRK13632 94 NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA----LNPEIIIFDES 169 (271)
T ss_pred HhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCC
Confidence 011 2455544322110 1111112234566777889988889999999999999999998864 78899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|++||+.++..+.++|+++.+ +.++|++||+...+..||+++- |.+|...
T Consensus 170 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~--l~~G~i~ 221 (271)
T PRK13632 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIV--FSEGKLI 221 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEE--EECCEEE
Confidence 999999999999999998864 3789999999988888999987 6688754
No 92
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=6.3e-29 Score=214.89 Aligned_cols=176 Identities=17% Similarity=0.075 Sum_probs=125.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++|++++ ||||||+++++++ +.+|++.+.+.. +... ..++.....+.+.
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~-----~~~~~~i~~~~q~~~~ 83 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS-----YQKN-----IEALRRIGALIEAPGF 83 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCc-----ccch-----HHHHhhEEEecCCCcc
Confidence 46778999999999997 9999999999775 346666666542 2211 1111111011111
Q ss_pred h--hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 129 F--GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 129 f--~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
+ .++++++..+... . ....+....++..+++.+..++++.+||||||||++||++++ .+|+++||||||++
T Consensus 84 ~~~~tv~e~l~~~~~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~ 156 (208)
T cd03268 84 YPNLTARENLRLLARL--L-GIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALL----GNPDLLILDEPTNG 156 (208)
T ss_pred CccCcHHHHHHHHHHh--c-CCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHh----cCCCEEEECCCccc
Confidence 1 1333332111100 0 011234566777889988889999999999999999998864 78899999999999
Q ss_pred CCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 207 LDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |++|..
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~--l~~g~i 204 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGI--INKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE--EECCEE
Confidence 999999999999998764 67899999999877 57999988 668853
No 93
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-28 Score=225.54 Aligned_cols=188 Identities=22% Similarity=0.179 Sum_probs=127.8
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHH--------HHHHHHhhhH--------HHHH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAK--------LLKVIEELDE--------KKKI 116 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~--------l~~~I~~l~~--------~~~~ 116 (264)
+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+... ++..+..++- ....
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIK 101 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHH
Confidence 5678999999999998 9999999999775 4466665544210 0000000000 0011
Q ss_pred HHHH----HHHHhh-hhh-hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHH
Q psy17516 117 ALRE----AWLKVN-TDF-GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLA 188 (264)
Q Consensus 117 ~~~~----~~~~v~-~~f-~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la 188 (264)
.++. .||... +-| .+|++++..+... ..........+..++..+|+. +..++++.+|||||||||+||++++
T Consensus 102 ~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~ 181 (305)
T PRK13651 102 EIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181 (305)
T ss_pred HHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence 1221 122211 111 2445444322111 111112223456777889996 6889999999999999999998875
Q ss_pred HhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch-HhhccceeEEEeeCCeE
Q psy17516 189 MLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM-FSNANVIFRTKFVDGNS 254 (264)
Q Consensus 189 ~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s 254 (264)
.+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+... .+.||+++- |++|..
T Consensus 182 ----~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~v--l~~G~i 243 (305)
T PRK13651 182 ----MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF--FKDGKI 243 (305)
T ss_pred ----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEE--EECCEE
Confidence 68899999999999999999999999998864 6789999999875 578999988 678864
No 94
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.95 E-value=2.3e-29 Score=219.26 Aligned_cols=183 Identities=20% Similarity=0.170 Sum_probs=123.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHH--HHHHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKK--IALREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~--~~~~~~~~~v~~~f 129 (264)
.+.+++||++++|++++ ||||||+++++++ ++.|.+.+.+.. +...+.... ..+.-.+|......
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRD-----ITGLPPHERARAGIGYVPEGRRIFP 88 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-----cCCCCHHHHHhcCeEEeccccccCC
Confidence 45678999999999998 9999999999775 345666665532 322222111 00000111111001
Q ss_pred h-hHHHhhcCCCcCCCCCCchhhHHHhHHHHc-CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 130 G-SIFSLLLPGSQAKLSPPAGKDILDGLEVNV-AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 130 ~-~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v-~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
. ++.+++..+.... ...........++..+ ++.+..++++.+||||||||++|||++ +.+|+++||||||++|
T Consensus 89 ~~t~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral----~~~p~llllDEPt~~L 163 (222)
T cd03224 89 ELTVEENLLLGAYAR-RRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARAL----MSRPKLLLLDEPSEGL 163 (222)
T ss_pred CCcHHHHHHHHhhhc-CchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHH----hcCCCEEEECCCcccC
Confidence 1 3333322111000 0111122344555556 467777899999999999999999886 4789999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 208 DLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|+.++..+.++|+++++ +.++|++||+...+ ..||+++- |++|..
T Consensus 164 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i 210 (222)
T cd03224 164 APKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYV--LERGRV 210 (222)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEE--eeCCeE
Confidence 99999999999998864 67999999998865 67999988 668864
No 95
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=4.1e-29 Score=216.61 Aligned_cols=183 Identities=19% Similarity=0.165 Sum_probs=126.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+.+++||++++||+++ ||||||+++++++ +..|++.+.+.. +...+... ..+.-.+|...... .
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~-----~~~~~~~~-~~i~~~~q~~~~~~~~ 87 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRD-----VTDLPPKD-RDIAMVFQNYALYPHM 87 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----CCcCCccc-ceEEEEecChhhccCC
Confidence 45678999999999997 9999999999775 345666655532 22222111 00100111111111 1
Q ss_pred hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++++++..+.. .........+.+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||++||+
T Consensus 88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~----~~p~llllDEPt~~LD~ 163 (213)
T cd03301 88 TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV----REPKVFLMDEPLSNLDA 163 (213)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCH
Confidence 44444322110 01111111234566777889988889999999999999999998864 78899999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.++..+.++|+++.+ +.++|+|||+...+ ..||+++- +++|..
T Consensus 164 ~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~--l~~g~~ 209 (213)
T cd03301 164 KLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAV--MNDGQI 209 (213)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE--EECCEE
Confidence 999999999998864 67899999998765 56999988 568764
No 96
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=3.6e-29 Score=221.05 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=127.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
.+.+++||++++||+++ ||||||+++++++ +..|++.+++.. +...... ...++.. +|....
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~-~~~~~~~i~~~~q~~~~ 88 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK-----VNDPKVD-ERLIRQEAGMVFQQFYL 88 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----CCcCChh-HHHHhhceEEEeccccc
Confidence 46778999999999998 9999999999775 346666666532 2221110 1111111 122111
Q ss_pred hh-hhHHHhhcCCCc--CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 DF-GSIFSLLLPGSQ--AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 ~f-~~vf~~L~~g~~--~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.. .++++++..+.. ...........+..++..+|+.+..++++.+|||||+||++|||+++ .+|++++|||||
T Consensus 89 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~----~~p~llllDEP~ 164 (240)
T PRK09493 89 FPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA----VKPKLMLFDEPT 164 (240)
T ss_pred CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCc
Confidence 11 144444322110 00111111234566777889988889999999999999999998864 688999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |++|..
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i 214 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIF--IDKGRI 214 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999998864 68899999999887 56999988 668764
No 97
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-28 Score=223.43 Aligned_cols=185 Identities=20% Similarity=0.203 Sum_probs=128.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhh-HHHHHHHHHH----HHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELD-EKKKIALREA----WLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~-~~~~~~~~~~----~~~v~ 126 (264)
..++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +.... ......++.. ||...
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~~~~~~~~~~~~ig~v~q~~~ 94 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIV-----VSSTSKQKEIKPVRKKVGVVFQFPE 94 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE-----CccccccccHHHHHhhEEEEecCcc
Confidence 35678999999999998 9999999999775 446666666542 21110 0011122211 22211
Q ss_pred -hhh-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 127 -TDF-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 127 -~~f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
.-| .++++++..+.. ......+....+..++..+++. +..++++.+||||||||++||++|+ .+|+++||||
T Consensus 95 ~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~----~~p~illLDE 170 (288)
T PRK13643 95 SQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA----MEPEVLVLDE 170 (288)
T ss_pred hhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH----hCCCEEEEEC
Confidence 111 244444322211 1111111223456777788995 5778999999999999999998875 6889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
||++||+.++..+.++|+++++ +.++|+|||+...+ +.||+++- |.+|...
T Consensus 171 Pt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~--l~~G~i~ 223 (288)
T PRK13643 171 PTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYL--LEKGHII 223 (288)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999998864 67999999998866 68999988 6688764
No 98
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.95 E-value=1.4e-28 Score=213.04 Aligned_cols=182 Identities=20% Similarity=0.193 Sum_probs=124.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+.+++||++++|++++ ||||||+++++++ +..|++.+.+.. +.. .......++.....+.+..
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~-~~~~~~~~~~~i~~~~q~~~~ 87 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLK-----LTD-DKKNINELRQKVGMVFQQFNL 87 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-----CCc-cchhHHHHHhcceEEeccccc
Confidence 46778999999999997 9999999999876 345666665532 211 0001111221111111111
Q ss_pred ---hhHHHhhcCCCc--CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 130 ---GSIFSLLLPGSQ--AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 130 ---~~vf~~L~~g~~--~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.++.+++..+.. ...........+..++..+++.+..++++.+|||||+||++||++++ .+|+++||||||
T Consensus 88 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~llllDEP~ 163 (213)
T cd03262 88 FPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA----MNPKVMLFDEPT 163 (213)
T ss_pred CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh----cCCCEEEEeCCc
Confidence 133333321110 00111111234566677889988889999999999999999998864 688999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCe
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGN 253 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~ 253 (264)
++||+.++..+.++|+++++ +.++|++||+...+ +.||+++- |.+|.
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~--l~~g~ 212 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIF--MDDGR 212 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EeCCc
Confidence 99999999999999999865 67899999998877 57999988 55764
No 99
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-28 Score=223.25 Aligned_cols=184 Identities=23% Similarity=0.165 Sum_probs=129.2
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhh-hHHHHHHHHHH----HHHhh-
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEEL-DEKKKIALREA----WLKVN- 126 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l-~~~~~~~~~~~----~~~v~- 126 (264)
.++++||+|++||+++ ||||||++++.++ ++.|++.+.+.. +... .......++.. ||...
T Consensus 22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERV-----ITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE-----CccccccchHHHHHhhEEEEeeCchh
Confidence 5678999999999998 9999999999775 446666666642 2110 01111122221 22211
Q ss_pred hhh-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 127 TDF-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 127 ~~f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
.-| .++++++..+.. ...........+..++..+++. +..++++.+||||||||++||++++ .+|+++|||||
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~----~~P~llllDEP 172 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA----MEPEVLVLDEP 172 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECC
Confidence 111 245554432211 1111111223456777889996 6678999999999999999998875 68899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|++||+.++..+.++|+++++ +.++|+|||+...+ +.||+++- |.+|...
T Consensus 173 t~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~--l~~G~i~ 225 (290)
T PRK13634 173 TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVV--MHKGTVF 225 (290)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999864 67899999998875 67999988 6688754
No 100
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.1e-29 Score=220.12 Aligned_cols=183 Identities=19% Similarity=0.149 Sum_probs=126.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+++++||++++|++++ ||||||+++++++ ++.|.+.+.+.. +...+.. +..+.-.+|...... .
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~-~~~i~~v~q~~~~~~~~ 89 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGED-----ATDVPVQ-ERNVGFVFQHYALFRHM 89 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----CCcCCcc-ccceEEEecCCcccCCC
Confidence 46678999999999997 9999999999776 346666666542 2222111 000100112111101 1
Q ss_pred hHHHhhcCCCcC-CC----CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 131 SIFSLLLPGSQA-KL----SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 131 ~vf~~L~~g~~~-~l----~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
++.+++..+... .. ......+.+..++..+++.+..++++.+|||||+||++||++++ .+|+++||||||+
T Consensus 90 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~----~~p~llllDEP~~ 165 (239)
T cd03296 90 TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA----VEPKVLLLDEPFG 165 (239)
T ss_pred CHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcc
Confidence 444443322110 00 00111234566777889988889999999999999999998864 6889999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||+.++..+.++|+++++ +.++|+|||+...+ +.||+++- |++|..
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~--l~~G~i 215 (239)
T cd03296 166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVV--MNKGRI 215 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EECCeE
Confidence 9999999999999998864 57899999998864 67999988 668865
No 101
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.9e-29 Score=214.56 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=124.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+++.. +.. ..+..+.-.+|...... .
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~---~~~~~i~~~~q~~~~~~~~ 85 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKP-----LDI---AARNRIGYLPEERGLYPKM 85 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCc-----hhH---HHHccEEEeccCCcCCcCC
Confidence 46678999999999997 9999999999775 345666665532 211 00000000111111000 1
Q ss_pred hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++.+++..... .........+.+..++..+++.+..++++.+||||||||++||++++ .+|+++|+||||++||+
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~----~~p~~lllDEP~~~LD~ 161 (210)
T cd03269 86 KVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI----HDPELLILDEPFSGLDP 161 (210)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCH
Confidence 33333211100 01111112234566777889988888999999999999999998864 68899999999999999
Q ss_pred HHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 210 SHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |.+|..
T Consensus 162 ~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~g~i 206 (210)
T cd03269 162 VNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL--LNKGRA 206 (210)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE--EeCCEE
Confidence 999999999998764 67899999998876 57999988 668764
No 102
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.3e-29 Score=222.15 Aligned_cols=186 Identities=19% Similarity=0.206 Sum_probs=128.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHH-HHHHHHHHHhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKK-IALREAWLKVNTDF 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~-~~~~~~~~~v~~~f 129 (264)
+.+++++||++++|++++ ||||||+++++++ +..|++.+.+.. +..++.... ..+.-.+|...-..
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~~~~~i~~~~q~~~~~~ 89 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKP-----ISMLSSRQLARRLALLPQHHLTPE 89 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEE-----hHHCCHHHHhhheEEecccCCCCC
Confidence 346778999999999987 9999999999775 345666655532 322221111 00100122211111
Q ss_pred h-hHHHhhcCCCcCC---CC--CCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 130 G-SIFSLLLPGSQAK---LS--PPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 130 ~-~vf~~L~~g~~~~---l~--~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
+ ++++++..+.... +. .......+..++..+++.+..++++.+|||||+||++|||+++ .+|+++|||||
T Consensus 90 ~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllDEP 165 (255)
T PRK11231 90 GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA----QDTPVVLLDEP 165 (255)
T ss_pred CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCC
Confidence 1 4555543221110 11 1111234566777789988889999999999999999998864 68899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|++||+.++..+.++|+++.+ +.++|++||+...+ +.||+++- +++|...
T Consensus 166 ~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~--l~~G~i~ 217 (255)
T PRK11231 166 TTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVV--LANGHVM 217 (255)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEE--EECCeEE
Confidence 999999999999999998764 67899999998865 68999988 6688653
No 103
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.95 E-value=2.6e-28 Score=212.58 Aligned_cols=176 Identities=22% Similarity=0.278 Sum_probs=122.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+.+.. +..++... ++.....+.++.
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~~~---~~~~i~~~~q~~~~ 89 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD-----IRQLDPAD---LRRNIGYVPQDVTL 89 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEE-----hHHCCHHH---HHhhEEEeCCCCcc
Confidence 46778999999999997 9999999999775 345666555532 32222111 111111111111
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccc-----------cCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKES-----------LGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~-----------~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
.++++++..+.. .. .......++..+++.+..++. +.+||||||||++|||+++ .+|+
T Consensus 90 ~~~tv~e~l~~~~~----~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~----~~p~ 160 (220)
T cd03245 90 FYGTLRDNITLGAP----LA-DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALL----NDPP 160 (220)
T ss_pred ccchHHHHhhcCCC----CC-CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHh----cCCC
Confidence 244444332211 01 112233455566766655554 4699999999999998864 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|++++++.++|+|||+....+.||+++- +++|..
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~--l~~g~i 216 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIV--MDSGRI 216 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEE--EeCCeE
Confidence 99999999999999999999999998766789999999998899999988 668764
No 104
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.5e-29 Score=222.77 Aligned_cols=184 Identities=20% Similarity=0.134 Sum_probs=124.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||++++||+++ ||||||+++++++. ..|.+.+++.. +...+. ....++.....+.
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~-----i~~~~~-~~~~~~~~i~~v~ 93 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN-----IYDPHV-DVVELRRRVGMVF 93 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEE-----cccccc-CHHHHhhcEEEEe
Confidence 46678999999999997 99999999998752 45666666642 221110 0111221111111
Q ss_pred hh---h-hhHHHhhcCCCcC-CCCCC-chhhHHHhHHHHcCCCc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQA-KLSPP-AGKDILDGLEVNVAFGG----LWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~~-~l~~~-~~~~~~~~l~~~v~l~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+. | .++++++..+... ..... ...+.+..++..+++.+ ..++++.+||||||||++|||+++ .+|+
T Consensus 94 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~----~~p~ 169 (253)
T PRK14242 94 QKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA----VEPE 169 (253)
T ss_pred cCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh----cCCC
Confidence 11 1 2344443221110 11111 11233455666777743 457889999999999999998864 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- +++|...
T Consensus 170 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~--l~~G~i~ 227 (253)
T PRK14242 170 VLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAF--FYMGKLI 227 (253)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999999999987677899999998876 67999988 6687653
No 105
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-28 Score=225.27 Aligned_cols=209 Identities=17% Similarity=0.100 Sum_probs=138.7
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~ 99 (264)
.+.+++++.++|...... ....++++||+|++|++++ ||||||+++++++ +++|.+.+.+
T Consensus 20 ~~l~~~nl~~~y~~~~~~------------~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g 87 (320)
T PRK13631 20 IILRVKNLYCVFDEKQEN------------ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGD 87 (320)
T ss_pred ceEEEEeEEEEeCCCCcc------------cccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 346677888888622100 0235677999999999998 9999999999775 3456666665
Q ss_pred HHHHHHHHH---------hhhHHHHHHHHHH----HHHhh-hhh-hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCC
Q psy17516 100 RAKLLKVIE---------ELDEKKKIALREA----WLKVN-TDF-GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFG 163 (264)
Q Consensus 100 ~~~l~~~I~---------~l~~~~~~~~~~~----~~~v~-~~f-~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~ 163 (264)
.. +.+.+. .........+++. +|... +-| .++++++..+... ..........+..++..++++
T Consensus 88 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 88 IY-IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred EE-cccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 32 111000 0000011222221 12211 111 2444444322111 111111223456677788996
Q ss_pred -cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hh
Q psy17516 164 -GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SN 240 (264)
Q Consensus 164 -~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ 240 (264)
+..++++.+||||||||++|||+++ .+|+++||||||++||+.++..+.++|+++.+ +.|+|+|||+...+ +.
T Consensus 167 ~~~~~~~~~~LSgGqkqRvaiAraL~----~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ 242 (320)
T PRK13631 167 DSYLERSPFGLSGGQKRRVAIAGILA----IQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEV 242 (320)
T ss_pred hhHhcCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 6788999999999999999998875 68899999999999999999999999998764 67999999999865 78
Q ss_pred ccceeEEEeeCCeEE
Q psy17516 241 ANVIFRTKFVDGNSN 255 (264)
Q Consensus 241 ad~l~~v~~~~g~s~ 255 (264)
||+++- |.+|...
T Consensus 243 adri~v--l~~G~i~ 255 (320)
T PRK13631 243 ADEVIV--MDKGKIL 255 (320)
T ss_pred CCEEEE--EECCEEE
Confidence 999988 6688654
No 106
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=1.7e-29 Score=234.95 Aligned_cols=195 Identities=16% Similarity=0.100 Sum_probs=137.9
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+.+++++.++|.. +..++++||+|++|++++ ||||||+++++++ ++.|++.+.|.
T Consensus 41 ~i~i~nl~k~y~~-----------------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~ 103 (340)
T PRK13536 41 AIDLAGVSKSYGD-----------------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV 103 (340)
T ss_pred eEEEEEEEEEECC-----------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCE
Confidence 4678888888862 346678999999999998 9999999999775 45677776664
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhh-----hhHHHhhcC-CCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCC
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDF-----GSIFSLLLP-GSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELS 174 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-----~~vf~~L~~-g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LS 174 (264)
. +.... ...+.....+.+.. .++++++.. +........+.......++..+++++..++.+.+||
T Consensus 104 ~-----~~~~~----~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS 174 (340)
T PRK13536 104 P-----VPARA----RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLS 174 (340)
T ss_pred E-----CCcch----HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCC
Confidence 2 22111 11121111111111 133333211 100011111112345567778999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCC
Q psy17516 175 GGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDG 252 (264)
Q Consensus 175 GGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g 252 (264)
||||||++||++++ .+|+++||||||+|||+.++..+.++|+++.+ +.++|++||+...+ +.||+++- +.+|
T Consensus 175 ~G~kqrv~lA~aL~----~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~i--l~~G 248 (340)
T PRK13536 175 GGMKRRLTLARALI----NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCV--LEAG 248 (340)
T ss_pred HHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE--EECC
Confidence 99999999998864 78899999999999999999999999999864 68899999998876 57999988 5677
Q ss_pred eEE
Q psy17516 253 NSN 255 (264)
Q Consensus 253 ~s~ 255 (264)
...
T Consensus 249 ~i~ 251 (340)
T PRK13536 249 RKI 251 (340)
T ss_pred EEE
Confidence 653
No 107
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=1.2e-28 Score=247.25 Aligned_cols=195 Identities=22% Similarity=0.205 Sum_probs=136.4
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
.+++++.++|...+ +..++++||+|++||+++ ||||||++++.++ |.+|.+.+++.+
T Consensus 472 I~~~nvsf~y~~~~---------------~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d 536 (709)
T COG2274 472 IEFENVSFRYGPDD---------------PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536 (709)
T ss_pred EEEEEEEEEeCCCC---------------cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 45667777777332 356678999999999998 9999999999664 567788888864
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhh----hhhHHHhhcCCCcCCCCCCchhhH--HHhHHHH-cCCCc----cccccc
Q psy17516 102 KLLKVIEELDEKKKIALREAWLKVNTD----FGSIFSLLLPGSQAKLSPPAGKDI--LDGLEVN-VAFGG----LWKESL 170 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~~~v~~~----f~~vf~~L~~g~~~~l~~~~~~~~--~~~l~~~-v~l~~----~~~~~~ 170 (264)
+..++. ..+|+....|.|+ .|+|.+++..+... ...++..+. ..++... ..+|. ......
T Consensus 537 -----l~~i~~---~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~-~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G 607 (709)
T COG2274 537 -----LNDIDL---ASLRRQVGYVLQDPFLFSGSIRENIALGNPE-ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607 (709)
T ss_pred -----HHhcCH---HHHHhheeEEcccchhhcCcHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 666663 3455332222221 14455544333211 111111111 1111111 12332 233556
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEee
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFV 250 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~ 250 (264)
..||||||||+||||++ +++|++++|||||||||+.+...|.+.|.+..++.|+|+||||..++..||+++- |+
T Consensus 608 ~~LSGGQrQrlalARaL----l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiV--l~ 681 (709)
T COG2274 608 ANLSGGQRQRLALARAL----LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIV--LD 681 (709)
T ss_pred CCCCHHHHHHHHHHHHh----ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEE--cc
Confidence 78999999999998875 6899999999999999999999999999999989999999999999999999998 77
Q ss_pred CCeE
Q psy17516 251 DGNS 254 (264)
Q Consensus 251 ~g~s 254 (264)
+|..
T Consensus 682 ~Gki 685 (709)
T COG2274 682 QGKI 685 (709)
T ss_pred CCce
Confidence 8765
No 108
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.2e-29 Score=219.52 Aligned_cols=181 Identities=18% Similarity=0.117 Sum_probs=126.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-----cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-----TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-----~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~ 128 (264)
.+++++||++++||+++ ||||||+++++++. ..|.+.+.+.. +...+. ..++.....+.+.
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~-----i~~~~~---~~~~~~i~~~~q~ 87 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD-----VKNQDV---VALRKNVGMVFQQ 87 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe-----cccCCH---HHHhhhEEEEecC
Confidence 46778999999999998 99999999998762 46666666642 322221 1222211111111
Q ss_pred h----hhHHHhhcCCCcC-CC-CC-CchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 129 F----GSIFSLLLPGSQA-KL-SP-PAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 129 f----~~vf~~L~~g~~~-~l-~~-~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
. .++++++..+... .. .. .........++..+++. +..++.+.+|||||+||++|||+++ .+|++
T Consensus 88 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~----~~p~l 163 (246)
T PRK14269 88 PNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA----IKPKL 163 (246)
T ss_pred CccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh----cCCCE
Confidence 1 2455544322111 11 01 11122345677788884 3467889999999999999998864 78999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||||||++||+.++..+.++|+++.++.++|+|||+...+ ..||+++- +.+|..
T Consensus 164 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~--l~~G~i 219 (246)
T PRK14269 164 LLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAF--FHLGEL 219 (246)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEE--EECCEE
Confidence 99999999999999999999999987778999999998865 68999988 568765
No 109
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=1.2e-28 Score=237.91 Aligned_cols=200 Identities=24% Similarity=0.232 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhhccccc---cc-ccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cch
Q psy17516 26 KKAQLSLRNEENQFKVGA---MV-KAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKK 93 (264)
Q Consensus 26 ~~a~~~~~~~~~~y~~~~---~~-~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~ 93 (264)
...+++++++.++|..+. .. ..+ ....++|||+|.+||+++ ||||||.++++++. +.|
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~----------~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G 346 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGE----------VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG 346 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccc----------eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 345667899999999643 00 001 122356999999999998 99999999997753 344
Q ss_pred hHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh----hcCCCcCC------------CCCCchhhHHHhHH
Q psy17516 94 SIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL----LLPGSQAK------------LSPPAGKDILDGLE 157 (264)
Q Consensus 94 ~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~----L~~g~~~~------------l~~~~~~~~~~~l~ 157 (264)
.+++.+.+ ..++......+++ ..+.|||. |-|..+.. ....+....+..++
T Consensus 347 ~i~~~g~~------~~~~~~~~~~~r~-------~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll 413 (539)
T COG1123 347 SIIFDGQD------LDLTGGELRRLRR-------RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELL 413 (539)
T ss_pred eEEEeCcc------cccccchhhhhhh-------heEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHH
Confidence 56665542 1222222233332 23334442 22222211 01112224577888
Q ss_pred HHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeC
Q psy17516 158 VNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLK 234 (264)
Q Consensus 158 ~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~ 234 (264)
..+|++. ..+++|++||||||||+||||||| .+|+++++|||||+||+..+..|.++|+++.+ +.++|+||||
T Consensus 414 ~~VgL~~~~l~ryP~elSGGQrQRvaIARALa----~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 414 ELVGLPPEFLDRYPHELSGGQRQRVAIARALA----LEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred HHcCCCHHHHhcCchhcCcchhHHHHHHHHHh----cCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 8999986 689999999999999999999876 68899999999999999999999999999875 6899999999
Q ss_pred cchHh-hccceeEEEeeCCeE
Q psy17516 235 EGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 235 ~~~~~-~ad~l~~v~~~~g~s 254 (264)
..+.+ .|||++- |.+|..
T Consensus 490 l~vV~~i~drv~v--m~~G~i 508 (539)
T COG1123 490 LAVVRYIADRVAV--MYDGRI 508 (539)
T ss_pred HHHHHhhCceEEE--EECCeE
Confidence 99885 6999987 678765
No 110
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.95 E-value=1.1e-28 Score=220.41 Aligned_cols=202 Identities=17% Similarity=0.128 Sum_probs=131.7
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
.+++++.++|.. +.+++++||++++|++++ ||||||+++++++ +..|.+.+.+..
T Consensus 7 l~~~~l~~~~~~-----------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 7 LSVRGLTKLYGP-----------------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred EEEeeeEEEcCC-----------------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence 456667777751 346678999999999998 9999999999775 345666665531
Q ss_pred HHHHHHHhhhHHHHHHH-HHHHHHhhhhhh-------hHHHhhcCCCcC-CC-CCCchhhHHHhHHHHcCCCc-cccccc
Q psy17516 102 KLLKVIEELDEKKKIAL-REAWLKVNTDFG-------SIFSLLLPGSQA-KL-SPPAGKDILDGLEVNVAFGG-LWKESL 170 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~-~~~~~~v~~~f~-------~vf~~L~~g~~~-~l-~~~~~~~~~~~l~~~v~l~~-~~~~~~ 170 (264)
.-...+...+....... +.....+.++.. ++++++...... .. ...........++..+++.+ ..++.+
T Consensus 70 ~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK11701 70 GQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP 149 (258)
T ss_pred ccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC
Confidence 00000222222111111 111111111110 122221100000 00 00111233456677788864 678999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEE
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRT 247 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v 247 (264)
.+|||||+||++|||+++ .+|+++||||||++||+.+...+.++|+++.+ +.++|+|||+...+. .||+++-
T Consensus 150 ~~LS~Gq~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~- 224 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLV----THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV- 224 (258)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE-
Confidence 999999999999998874 68999999999999999999999999998764 678999999999885 7999988
Q ss_pred EeeCCeE
Q psy17516 248 KFVDGNS 254 (264)
Q Consensus 248 ~~~~g~s 254 (264)
+++|..
T Consensus 225 -l~~g~i 230 (258)
T PRK11701 225 -MKQGRV 230 (258)
T ss_pred -EECCEE
Confidence 668765
No 111
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=1.6e-28 Score=218.01 Aligned_cols=183 Identities=19% Similarity=0.142 Sum_probs=126.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--c-----chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--T-----KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~-----~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+.+++||+|++||+++ ||||||+++++++. . +|.+.+.+.. +..... ....++.....+.
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~-----~~~~~~-~~~~~~~~i~~v~ 88 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQD-----IYDKKI-DVVELRRRVGMVF 88 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEE-----cccccc-chHHHHhheEEEe
Confidence 35678999999999997 99999999997753 2 5666665542 221100 0111121111111
Q ss_pred hhh----hhHHHhhcCCCcC-CC-CCCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TDF----GSIFSLLLPGSQA-KL-SPPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~f----~~vf~~L~~g~~~-~l-~~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+.. .++++++..+... .. ...........++..+|+. +..++++.+||||||||++|||+++ .+|+
T Consensus 89 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~----~~p~ 164 (247)
T TIGR00972 89 QKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA----VEPE 164 (247)
T ss_pred cCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh----cCCC
Confidence 111 2344443221100 00 1111123456677788987 6778899999999999999998864 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.++.++|+|||+...+ ..||+++- |++|..
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~--l~~G~i 221 (247)
T TIGR00972 165 VLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAF--FYDGEL 221 (247)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999999999987667899999999865 67999988 678865
No 112
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.5e-28 Score=221.19 Aligned_cols=185 Identities=17% Similarity=0.136 Sum_probs=131.1
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHH-HHHHHHHHhh-hh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKI-ALREAWLKVN-TD 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~-~~~~~~~~v~-~~ 128 (264)
+.+++++||+|++||+++ ||||||+++++++ +..|++.+.+.. +...+..... .+--.+|... ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~-----i~~~~~~~~~~~i~~~~q~~~~~~ 94 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV-----LSEETVWDVRRQVGMVFQNPDNQF 94 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE-----CCcCcHHHHhhheEEEEeCHHHhc
Confidence 346778999999999997 9999999999775 346667666642 3322211110 0100122221 11
Q ss_pred h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 129 F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 129 f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
+ .++++++..+.. ......+....+..++..+|+.+..++++.+|||||+||++||++++ .+|+++||||||++
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~----~~p~lllLDEPt~g 170 (279)
T PRK13635 95 VGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA----LQPDIIILDEATSM 170 (279)
T ss_pred ccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCccc
Confidence 1 245555432211 11111111234567777889999899999999999999999998864 78899999999999
Q ss_pred CCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 207 LDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||+.++..+.++|+++++ +.++|+|||+...+..||+++- +.+|..
T Consensus 171 LD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~--l~~G~i 218 (279)
T PRK13635 171 LDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIV--MNKGEI 218 (279)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE--EECCEE
Confidence 999999999999999875 6789999999998888999988 568865
No 113
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.95 E-value=2.8e-28 Score=212.90 Aligned_cols=183 Identities=20% Similarity=0.206 Sum_probs=128.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
.+++++||++++|++++ ||||||+++++++ ++.|++++.+.. +..++......++.. ++....
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQE-----LYGASEKELVQLRRNIGYIFQAHNL 93 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-----hHhcCHhHHHHHHhheEEEcCChhh
Confidence 46778999999999998 9999999999775 346666666542 333332221122211 111111
Q ss_pred hh-hhHHHhhcCCCcCC--CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 DF-GSIFSLLLPGSQAK--LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 ~f-~~vf~~L~~g~~~~--l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.. .++++++..+.... ....+....+..++..+|+.+..++++.+|||||+||++|||+++ .+|+++||||||
T Consensus 94 ~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~----~~p~illlDEP~ 169 (220)
T TIGR02982 94 LGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV----HRPKLVLADEPT 169 (220)
T ss_pred cCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCC
Confidence 11 13333322111100 111111234567778889988889999999999999999998764 788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCe
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGN 253 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~ 253 (264)
++||+.++..+.++|+++.+ +.++|+|||+...++.||+++- |.+|.
T Consensus 170 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~--l~~g~ 218 (220)
T TIGR02982 170 AALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVH--MEDGK 218 (220)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE--EECCE
Confidence 99999999999999998764 6899999999998899999987 56774
No 114
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=9.6e-29 Score=231.05 Aligned_cols=184 Identities=21% Similarity=0.192 Sum_probs=128.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+.+++||++++||+++ |||||||++++++ ++.|.+.+++.+ +....... ..+--.||...-.. .
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~-----i~~~~~~~-r~i~~v~Q~~~l~p~~ 89 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTD-----VSRLHARD-RKVGFVFQHYALFRHM 89 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----CCCCCHHH-CCEEEEecCcccCCCC
Confidence 35667999999999998 9999999999776 345666666642 32222110 00000111110000 1
Q ss_pred hHHHhhcCCCcC-----CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 131 SIFSLLLPGSQA-----KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 131 ~vf~~L~~g~~~-----~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
++++++..+... ..........+..++..+++++..++++.+|||||||||+|||+++ .+|+++||||||+
T Consensus 90 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~----~~P~llLLDEP~s 165 (353)
T PRK10851 90 TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA----VEPQILLLDEPFG 165 (353)
T ss_pred cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCc
Confidence 333333222110 0011112235667888899999999999999999999999998864 7889999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeEE
Q psy17516 206 ALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s~ 255 (264)
+||+.++..+.+.|+++.+ +.++|+||||... +..||+++- |.+|...
T Consensus 166 ~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~v--l~~G~i~ 216 (353)
T PRK10851 166 ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVV--MSQGNIE 216 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999865 5789999999886 577999988 6688653
No 115
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-28 Score=234.76 Aligned_cols=188 Identities=25% Similarity=0.236 Sum_probs=135.9
Q ss_pred HHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh-c-cchhHHHhhHHHH
Q psy17516 32 LRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA-M-TKKSIVESDRAKL 103 (264)
Q Consensus 32 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-~-~~~~~~~~~~~~l 103 (264)
.+++..+|..+ +...+++||++++|+.++ ||||||++.++++ + ++|++.++|.+
T Consensus 323 ~~~l~~~y~~g----------------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~-- 384 (559)
T COG4988 323 LENLSFRYPDG----------------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID-- 384 (559)
T ss_pred ecceEEecCCC----------------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcc--
Confidence 34677777644 256678999999999998 9999999998764 3 56777777753
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhh----hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc------ccc----cc
Q psy17516 104 LKVIEELDEKKKIALREAWLKVNTDF----GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG------LWK----ES 169 (264)
Q Consensus 104 ~~~I~~l~~~~~~~~~~~~~~v~~~f----~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~------~~~----~~ 169 (264)
+.+++ ...|++....|.++- +++.+++..+... ..++...+++.++|+.+ -.+ ..
T Consensus 385 ---l~~l~---~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~-----~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~ 453 (559)
T COG4988 385 ---LRDLS---PEAWRKQISWVSQNPYLFAGTIRENILLARPD-----ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEG 453 (559)
T ss_pred ---ccccC---HHHHHhHeeeeCCCCccccccHHHHhhccCCc-----CCHHHHHHHHHHhcHHHhhcCCCcccchhccC
Confidence 44554 345665544444442 3444454433221 11222233333444332 223 34
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEe
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKF 249 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~ 249 (264)
...|||||+||+|+|||| ++|++++|||||||+||.++.+.|.+.|.+++++.++|+||||...+..||+++- |
T Consensus 454 G~~LSgGQ~QRlaLARAl----l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~v--l 527 (559)
T COG4988 454 GAGLSGGQAQRLALARAL----LSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVV--L 527 (559)
T ss_pred CCCCCHHHHHHHHHHHHh----cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEE--e
Confidence 456999999999999875 6889999999999999999999999999999999999999999999999999998 7
Q ss_pred eCCeE
Q psy17516 250 VDGNS 254 (264)
Q Consensus 250 ~~g~s 254 (264)
++|..
T Consensus 528 d~G~l 532 (559)
T COG4988 528 DNGRL 532 (559)
T ss_pred cCCce
Confidence 77754
No 116
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.95 E-value=8.2e-29 Score=221.16 Aligned_cols=184 Identities=17% Similarity=0.188 Sum_probs=126.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhh----------hHHHHHHHHHH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEEL----------DEKKKIALREA 121 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l----------~~~~~~~~~~~ 121 (264)
.+.+++||++++||+++ ||||||+++++++ +..|++.+.+.. +... +......++..
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT-----INLVRDKDGQLKVADKNQLRLLRTR 93 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-----cccccccccccccccchHHHHHhhc
Confidence 46678999999999997 9999999999775 345666665532 2110 11111222221
Q ss_pred HHHhhhhh-----hhHHHhhcCCCcC--CCCCCchhhHHHhHHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcC
Q psy17516 122 WLKVNTDF-----GSIFSLLLPGSQA--KLSPPAGKDILDGLEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFK 193 (264)
Q Consensus 122 ~~~v~~~f-----~~vf~~L~~g~~~--~l~~~~~~~~~~~l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~ 193 (264)
+..+.++. .++++++..+... ..........+..++..+|+.+. .++++.+|||||+||++|||+++ .
T Consensus 94 i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~----~ 169 (257)
T PRK10619 94 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA----M 169 (257)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHh----c
Confidence 11111211 1344443211100 01111112345667778899876 47889999999999999998864 6
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- +++|..
T Consensus 170 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~--l~~G~i 230 (257)
T PRK10619 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF--LHQGKI 230 (257)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE--EECCEE
Confidence 8899999999999999999999999999865 688999999999876 6999988 567754
No 117
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.5e-28 Score=216.11 Aligned_cols=184 Identities=17% Similarity=0.111 Sum_probs=126.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHH-HHHHHHHHHhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKK-IALREAWLKVNTDF- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~-~~~~~~~~~v~~~f- 129 (264)
.+++++||++++|++++ ||||||+++++++ +..|.+.+.+.. +...+.... ..+.-.+|......
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED-----IREQDPVELRRKIGYVIQQIGLFPH 89 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeE-----cCcCChHHhhcceEEEccCccccCC
Confidence 45678999999999998 9999999999775 345666665532 322221110 00000112111111
Q ss_pred hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCc--ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 130 GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGG--LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 130 ~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~--~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
.++++++..+.. ...........+..++..+++.. ..++++.+|||||+||++|||++ +.+|+++||||||++
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral----~~~p~llllDEPt~~ 165 (242)
T cd03295 90 MTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL----AADPPLLLMDEPFGA 165 (242)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH----hcCCCEEEecCCccc
Confidence 144444321110 00111111234566777889985 77899999999999999999886 478999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 207 LDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- +++|..
T Consensus 166 LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~--l~~G~i 214 (242)
T cd03295 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAI--MKNGEI 214 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999864 67899999999864 67999987 678865
No 118
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.3e-28 Score=211.78 Aligned_cols=179 Identities=19% Similarity=0.176 Sum_probs=124.9
Q ss_pred ccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-hhHHH
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-GSIFS 134 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~~vf~ 134 (264)
++||++++||+++ ||||||+++++++ +.+|.+.+.+.. +...+.. +..+--.+|...... .++.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~-----~~~~~~~-~~~i~~~~q~~~~~~~~tv~e 89 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVD-----VTAAPPA-DRPVSMLFQENNLFAHLTVEQ 89 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-----cCcCCHh-HccEEEEecccccCCCCcHHH
Confidence 7999999999998 9999999999775 345666665532 3222211 111100112211100 13444
Q ss_pred hhcCCCcCCCCC-CchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHH
Q psy17516 135 LLLPGSQAKLSP-PAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213 (264)
Q Consensus 135 ~L~~g~~~~l~~-~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~ 213 (264)
++..+....... ...++.+..++..+++.+..++++.+||||||||++|||+++ .+|+++||||||++||+.++.
T Consensus 90 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~----~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 90 NVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLV----RDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred HHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHH
Confidence 432221111111 112234567777889988888999999999999999998864 788999999999999999999
Q ss_pred HHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 214 NIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 214 ~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.+.++|+++.+ +.++|+|||+...+ +.||+++- +++|..
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~G~i 207 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVF--LDNGRI 207 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEE--EECCEE
Confidence 99999998763 67899999999876 66999988 668764
No 119
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.3e-29 Score=222.17 Aligned_cols=182 Identities=18% Similarity=0.144 Sum_probs=123.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhcc-------chhHHHhhHHHHHHHHH--hhhHHHHHHHHHHHHH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-------KKSIVESDRAKLLKVIE--ELDEKKKIALREAWLK 124 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-------~~~~~~~~~~~l~~~I~--~l~~~~~~~~~~~~~~ 124 (264)
.+++++||+|++||+++ ||||||+++++++.+ .|++.+.+.. +. ..+.. .++.....
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~-----i~~~~~~~~---~~~~~i~~ 89 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRN-----IYSPDVDPI---EVRREVGM 89 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE-----ccccccChH---HHhhceeE
Confidence 46778999999999998 999999999987632 5666666542 22 11111 12211111
Q ss_pred hhhh---h-h-hHHHhhcCCCc-CCC--CCCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhc
Q psy17516 125 VNTD---F-G-SIFSLLLPGSQ-AKL--SPPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLF 192 (264)
Q Consensus 125 v~~~---f-~-~vf~~L~~g~~-~~l--~~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~ 192 (264)
+.++ | . ++++++..+.. ... ........+..++..+++. ...++++.+||||||||++|||+++
T Consensus 90 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~---- 165 (253)
T PRK14267 90 VFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA---- 165 (253)
T ss_pred EecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh----
Confidence 1111 1 1 34443321110 000 0111112345566667763 3567889999999999999998864
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
.+|+++|+||||++||+.++..+.++|+++.++.++|+|||+...+ ..||+++- +++|...
T Consensus 166 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i~ 227 (253)
T PRK14267 166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAF--LYLGKLI 227 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEE--EECCEEE
Confidence 7899999999999999999999999999987678999999998875 67999988 6688653
No 120
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.95 E-value=8.7e-29 Score=221.59 Aligned_cols=184 Identities=18% Similarity=0.144 Sum_probs=128.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhcc-----chhHHHhhHHHHHHHHHhhh--HHHHHHHHH----HH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-----KKSIVESDRAKLLKVIEELD--EKKKIALRE----AW 122 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-----~~~~~~~~~~~l~~~I~~l~--~~~~~~~~~----~~ 122 (264)
.+.+++||++++||+++ ||||||+++++++.. +|.+.+.+.. +.... ......++. .+
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~~~i~~~~ 92 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT-----VQREGRLARDIRKSRANTGYIF 92 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe-----cccccccchhHHHHHhheEEEc
Confidence 46678999999999998 999999999977642 2566666542 22111 000111111 12
Q ss_pred HHhhhhh-hhHHHhhcCCCcCC---------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhc
Q psy17516 123 LKVNTDF-GSIFSLLLPGSQAK---------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLF 192 (264)
Q Consensus 123 ~~v~~~f-~~vf~~L~~g~~~~---------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~ 192 (264)
+...... .++++++..+.... .........+..++..+++.+..++.+.+||||||||++|||+++
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~---- 168 (262)
T PRK09984 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM---- 168 (262)
T ss_pred cccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHh----
Confidence 2221111 14555543221100 001112234567777889988889999999999999999998864
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeE
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNS 254 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s 254 (264)
.+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+... ...||+++- +.+|..
T Consensus 169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~--l~~g~i 231 (262)
T PRK09984 169 QQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA--LRQGHV 231 (262)
T ss_pred cCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 68899999999999999999999999999863 6899999999985 578999988 568765
No 121
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.2e-28 Score=220.94 Aligned_cols=183 Identities=18% Similarity=0.167 Sum_probs=129.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +...+.. ..++.. +|....
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~--~~~~~~i~~v~q~~~~ 88 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID-----TGDFSKL--QGIRKLVGIVFQNPET 88 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-----CCccccH--HHHHhheEEEEEChhh
Confidence 36778999999999998 9999999999775 346666666542 2222110 111111 121111
Q ss_pred -hh-hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 -DF-GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 -~f-~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.+ .++++++..+... ..........+..++..+|+.+..++++..|||||+||++||++++ .+|+++||||||
T Consensus 89 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~----~~p~lllLDEPt 164 (274)
T PRK13644 89 QFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT----MEPECLIFDEVT 164 (274)
T ss_pred hcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCc
Confidence 11 2455544322111 1111112234566777889988889999999999999999998864 788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
++||+.++..+.++|+++.+ +.++|++||+...+..||+++- +++|...
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~--l~~G~i~ 214 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIV--MDRGKIV 214 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEE--EECCEEE
Confidence 99999999999999998764 6899999999998888999987 5687653
No 122
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3e-29 Score=221.21 Aligned_cols=181 Identities=18% Similarity=0.140 Sum_probs=123.5
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH----HHHHhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE----AWLKVN 126 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~~~v~ 126 (264)
+.+++++||++++||+++ ||||||+++++++ +..|++.+.+.. +..++... .++. .++...
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-----~~~~~~~~--~~~~~i~~~~q~~~ 90 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKD-----ITDWQTAK--IMREAVAIVPEGRR 90 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEe-----cCCCCHHH--HHHhCEEEeccCcc
Confidence 346778999999999997 9999999999775 346666665532 33332211 1111 111111
Q ss_pred hhh--hhHHHhhcCCCcCCCCCCchhhHHHhHHHHc-CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 127 TDF--GSIFSLLLPGSQAKLSPPAGKDILDGLEVNV-AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 127 ~~f--~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v-~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
-| .++++++..+... .........+..++..+ ++.+..++++.+||||||||++|||+++ .+|+++|||||
T Consensus 91 -~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~----~~p~illlDEP 164 (237)
T PRK11614 91 -VFSRMTVEENLAMGGFF-AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM----SQPRLLLLDEP 164 (237)
T ss_pred -cCCCCcHHHHHHHhhhc-cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHH----hCCCEEEEcCc
Confidence 11 1344443221110 01111112234444455 4666677899999999999999998875 68899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcc-hHhhccceeEEEeeCCeE
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEG-MFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~-~~~~ad~l~~v~~~~g~s 254 (264)
|++||+.++..+.++|+++.+ +.++|++||+.. ..+.||+++- +++|..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i 215 (237)
T PRK11614 165 SLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYV--LENGHV 215 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEE--EeCCEE
Confidence 999999999999999998764 688999999976 5688999988 668764
No 123
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=2.9e-28 Score=218.56 Aligned_cols=189 Identities=17% Similarity=0.182 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~ 99 (264)
..++++++.+.|. .+.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+
T Consensus 11 ~~l~i~~l~~~~~-----------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g 73 (257)
T PRK11247 11 TPLLLNAVSKRYG-----------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT 73 (257)
T ss_pred CcEEEEEEEEEEC-----------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 3345666667775 1346678999999999997 9999999999775 3455555443
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHH
Q psy17516 100 RAKLLKVIEELDEKKKIALREAWLKVNTDF--GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQ 177 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f--~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGe 177 (264)
. . +..+ +..+...+|... -| .++++++..+.. ......+..++..+++.+..++++.+|||||
T Consensus 74 ~-~----~~~~----~~~i~~v~q~~~-l~~~~tv~enl~~~~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 138 (257)
T PRK11247 74 A-P----LAEA----REDTRLMFQDAR-LLPWKKVIDNVGLGLK-----GQWRDAALQALAAVGLADRANEWPAALSGGQ 138 (257)
T ss_pred E-E----HHHh----hCceEEEecCcc-CCCCCcHHHHHHhccc-----chHHHHHHHHHHHcCChhHhcCChhhCCHHH
Confidence 2 1 1110 000000011110 01 134443322110 1112345667778899888899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 178 RSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 178 kqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|||++|||+++ .+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- +.+|..
T Consensus 139 kqrl~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~--l~~G~i 212 (257)
T PRK11247 139 KQRVALARALI----HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLL--IEEGKI 212 (257)
T ss_pred HHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 99999998864 68899999999999999999999999998743 67899999998875 67999988 567754
No 124
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.1e-28 Score=216.74 Aligned_cols=181 Identities=19% Similarity=0.221 Sum_probs=128.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
.+++++||++++||+++ ||||||+++++++ +.+|++.+.+.. +...... .++.. +|....
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~---~~~~~i~~v~q~~~~ 96 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP-----LESWSSK---AFARKVAYLPQQLPA 96 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEe-----hhhCCHH---HHhhheEEeccCCCC
Confidence 46778999999999997 9999999999776 346666666542 3222211 11211 121111
Q ss_pred hhh-hHHHhhcCCCcCC---CC--CCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee
Q psy17516 128 DFG-SIFSLLLPGSQAK---LS--PPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201 (264)
Q Consensus 128 ~f~-~vf~~L~~g~~~~---l~--~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD 201 (264)
.++ ++++++..+.... .. .....+.+..++..+++.+..++++.+|||||+||++||++++ .+|+++|||
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~----~~p~lllLD 172 (265)
T PRK10575 97 AEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA----QDSRCLLLD 172 (265)
T ss_pred CCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEc
Confidence 111 4444443221100 00 0111234567777889988889999999999999999998864 688999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 202 EVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|||++||+.++..+.++|.++++ +.++|+|||+...+ +.||+++- |.+|..
T Consensus 173 EPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~--l~~G~i 226 (265)
T PRK10575 173 EPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVA--LRGGEM 226 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCeE
Confidence 99999999999999999998863 67899999998876 67999987 668765
No 125
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.6e-28 Score=213.69 Aligned_cols=184 Identities=17% Similarity=0.115 Sum_probs=125.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHH---hhhHHHHHHHHHHHHHhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIE---ELDEKKKIALREAWLKVNTD 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~---~l~~~~~~~~~~~~~~v~~~ 128 (264)
.+++++||++++||+++ ||||||+++++++. ..|.+.+.+.. +. ..+......++.....+.+.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH-----FDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe-----cccccccchhhHHHHHhheEEEecC
Confidence 46778999999999997 99999999997763 45666665532 11 00100111122111111111
Q ss_pred h-----hhHHHhhcCCC--cCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee
Q psy17516 129 F-----GSIFSLLLPGS--QAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201 (264)
Q Consensus 129 f-----~~vf~~L~~g~--~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD 201 (264)
. .++++++..+. ............+..++..+|+.+..++.+.+||||||||++|||+++ .+|+++|||
T Consensus 91 ~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~----~~p~llilD 166 (242)
T PRK11124 91 YNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM----MEPQVLLFD 166 (242)
T ss_pred ccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEc
Confidence 1 13444332110 000011111233556677889988889999999999999999998864 688999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 202 EVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|||++||+.++..+.++|+++.+ +.++|+|||+.... +.||+++- |.+|..
T Consensus 167 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~--l~~g~i 219 (242)
T PRK11124 167 EPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVY--MENGHI 219 (242)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE--EECCEE
Confidence 99999999999999999998864 68899999999887 57999988 567765
No 126
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=8.6e-29 Score=240.58 Aligned_cols=196 Identities=17% Similarity=0.142 Sum_probs=135.9
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+.+++++.+.|.. +.+++++||++++|++++ ||||||+++++++ ++.|.+.+.+.
T Consensus 4 ~i~~~~l~~~~~~-----------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~ 66 (501)
T PRK10762 4 LLQLKGIDKAFPG-----------------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGK 66 (501)
T ss_pred eEEEeeeEEEeCC-----------------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 4556677777751 245678999999999997 9999999999775 45666666654
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhh-----hhHHHhhcCCCcCC-----CCCCchhhHHHhHHHHcCCCccccccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDF-----GSIFSLLLPGSQAK-----LSPPAGKDILDGLEVNVAFGGLWKESL 170 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-----~~vf~~L~~g~~~~-----l~~~~~~~~~~~l~~~v~l~~~~~~~~ 170 (264)
. +...+... ..+.....+.+.. -++++++..+.... .........+..++..+|+.+..++++
T Consensus 67 ~-----~~~~~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 139 (501)
T PRK10762 67 E-----VTFNGPKS--SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV 139 (501)
T ss_pred E-----CCCCCHHH--HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch
Confidence 2 22211111 1111011111111 13444443221100 001111234567778899998889999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEE
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTK 248 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~ 248 (264)
.+|||||||||+||++++ .+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++-
T Consensus 140 ~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~-- 213 (501)
T PRK10762 140 GELSIGEQQMVEIAKVLS----FESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTV-- 213 (501)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--
Confidence 999999999999998864 78999999999999999999999999998864 67899999998766 67999998
Q ss_pred eeCCeE
Q psy17516 249 FVDGNS 254 (264)
Q Consensus 249 ~~~g~s 254 (264)
+++|..
T Consensus 214 l~~G~i 219 (501)
T PRK10762 214 FRDGQF 219 (501)
T ss_pred EeCCEE
Confidence 668864
No 127
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.6e-28 Score=220.21 Aligned_cols=184 Identities=22% Similarity=0.176 Sum_probs=127.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhh-HHHHHHHHHH----HHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELD-EKKKIALREA----WLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~-~~~~~~~~~~----~~~v~ 126 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +.... ......++.. +|...
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~~~~~~~~~~ig~v~q~~~ 95 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYH-----ITPETGNKNLKKLRKKVSLVFQFPE 95 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-----CccccccchHHHHHhceEEEEeChh
Confidence 46778999999999998 9999999999775 346666666642 21110 0001111111 12111
Q ss_pred -hhh-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 127 -TDF-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 127 -~~f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
..| .++++++..+.. ...........+..++..+|+. +..++++.+||||||||++||++++ .+|+++||||
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~----~~p~lLlLDE 171 (287)
T PRK13641 96 AQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA----YEPEILCLDE 171 (287)
T ss_pred hhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEEC
Confidence 111 244444322111 1111111223456777788997 6789999999999999999998875 6889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- +.+|..
T Consensus 172 Pt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~--l~~G~i 223 (287)
T PRK13641 172 PAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLV--LEHGKL 223 (287)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999864 67899999998865 68999998 567765
No 128
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.7e-28 Score=216.68 Aligned_cols=175 Identities=19% Similarity=0.167 Sum_probs=121.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+.+++||+|++|++++ ||||||+++++++ ++.|.+.+.+.+ +.... ....+ .+|...... .
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~--~~~~~--v~q~~~~~~~~ 85 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP-----VEGPG--AERGV--VFQNEGLLPWR 85 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----CCCCC--CcEEE--EeCCCccCCCC
Confidence 46678999999999997 9999999999876 346666665532 21111 00000 111110000 1
Q ss_pred hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++.+++..+.. ...........+..++..+++.+..++++.+||||||||++||++++ .+|+++||||||++||+
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~----~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 86 NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALA----ANPQLLLLDEPFGALDA 161 (255)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCH
Confidence 34444322110 01111111234567777889988888999999999999999998864 78899999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEE
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v 247 (264)
.++..+.++|+++++ +.++|+|||+...+ ..||+++-+
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL 202 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999998743 67899999998876 679999883
No 129
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.1e-28 Score=218.86 Aligned_cols=182 Identities=19% Similarity=0.200 Sum_probs=129.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cc---hhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TK---KSIVESDRAKLLKVIEELDEKKKIALREA----WLK 124 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~---~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~ 124 (264)
.+.+++||+|++||+++ ||||||+++++++. .. |.+.+.+.. +...... .++.. +|.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~-----~~~~~~~---~~~~~ig~v~q~ 92 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT-----LTAKTVW---DIREKVGIVFQN 92 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE-----CCcCCHH---HHHhheEEEEEC
Confidence 36778999999999998 99999999998763 33 556555532 2221111 11111 122
Q ss_pred hhhhh--hhHHHhhcCCC-cCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee
Q psy17516 125 VNTDF--GSIFSLLLPGS-QAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201 (264)
Q Consensus 125 v~~~f--~~vf~~L~~g~-~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD 201 (264)
....+ .++++++..+. .......+..+.+..++..+++.+..++++.+|||||+||++||++++ .+|+++|+|
T Consensus 93 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~----~~P~llllD 168 (282)
T PRK13640 93 PDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA----VEPKIIILD 168 (282)
T ss_pred HHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH----cCCCEEEEE
Confidence 11111 24555543221 111111112234566777889998889999999999999999998875 688999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 202 EVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|||++||+.++..+.++|+++++ +.++|+|||+...+..||+++- |.+|...
T Consensus 169 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~--l~~G~i~ 222 (282)
T PRK13640 169 ESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLV--LDDGKLL 222 (282)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999998864 6799999999998889999987 6688653
No 130
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.95 E-value=8.7e-28 Score=236.14 Aligned_cols=179 Identities=21% Similarity=0.223 Sum_probs=127.0
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+.+++++||++++|+.++ ||||||+++++++ +.+|.+.+++.+ +..++.. .++..+..++|+.
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~-----i~~~~~~---~~~~~i~~v~Q~~~ 416 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD-----LADYTLA---SLRRQVALVSQDVV 416 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe-----HHhcCHH---HHHhhceEEccCcc
Confidence 457889999999999997 9999999999775 446777777753 5555432 2333232233332
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+++.+++..+... ...++.+..++..+|+.+ ........||||||||++|||++ +++|
T Consensus 417 lf~~Ti~~Ni~~~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal----l~~~ 488 (571)
T TIGR02203 417 LFNDTIANNIAYGRTE----QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL----LKDA 488 (571)
T ss_pred cccccHHHHHhcCCCC----CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH----hcCC
Confidence 3444454433210 111222333333444322 12233457999999999999886 4799
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|+++|||||++||+.+...+.+.|++..++.++|+||||..++..||+++. +++|...
T Consensus 489 ~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~--l~~g~i~ 546 (571)
T TIGR02203 489 PILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVV--MDDGRIV 546 (571)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEE--EeCCEEE
Confidence 999999999999999999999999998778899999999999999999998 6687643
No 131
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.95 E-value=2.8e-28 Score=214.64 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=124.6
Q ss_pred cccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-hhHH
Q psy17516 63 SMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-GSIF 133 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~~vf 133 (264)
+++||+|++||+++ ||||||+++++++. ..|++.+.+.. +...+.. ..+ .+|...... .+++
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~--~~~--v~q~~~l~~~~tv~ 72 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ-----ITEPGPD--RMV--VFQNYSLLPWLTVR 72 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-----CCCCChh--heE--EecCcccCCCCCHH
Confidence 57999999999998 99999999997753 45666665532 2222211 111 122211111 2455
Q ss_pred HhhcCCCc---CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHH
Q psy17516 134 SLLLPGSQ---AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210 (264)
Q Consensus 134 ~~L~~g~~---~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~ 210 (264)
+++..+.. .........+.+..++..+++.+..++++.+||||||||++||++++ .+|+++||||||++||+.
T Consensus 73 e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 73 ENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALS----IRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCCcCCCHH
Confidence 55432111 01111111234566777889988889999999999999999998864 688999999999999999
Q ss_pred HHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 211 HTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 211 ~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++..+.++|+++.+ +.++|+|||+...+ +.||+++- |++|..
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~--l~~G~i 193 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVM--LTNGPA 193 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE--EeCCcE
Confidence 99999999998763 57899999998865 67999988 557654
No 132
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=3.7e-28 Score=221.86 Aligned_cols=188 Identities=20% Similarity=0.234 Sum_probs=136.8
Q ss_pred HHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHH
Q psy17516 31 SLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAK 102 (264)
Q Consensus 31 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~ 102 (264)
+.+++.++|+. ++..+++|||+|++|++++ ||||||+++++++ +++|++.+.+.+
T Consensus 6 ~~~~l~k~~~~----------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~- 68 (293)
T COG1131 6 EVRNLTKKYGG----------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD- 68 (293)
T ss_pred eecceEEEeCC----------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEe-
Confidence 44667777772 1356678999999999998 9999999999775 456777777643
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC--------CC--C-CchhhHHHhHHHHcCCCcccccc
Q psy17516 103 LLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK--------LS--P-PAGKDILDGLEVNVAFGGLWKES 169 (264)
Q Consensus 103 l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~--------l~--~-~~~~~~~~~l~~~v~l~~~~~~~ 169 (264)
+. + . ...++ +.++++++. +.+..++. +. . .........++..+++.+..++.
T Consensus 69 ----~~--~-~-~~~~~-------~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 133 (293)
T COG1131 69 ----VV--K-E-PAKVR-------RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKK 133 (293)
T ss_pred ----Cc--c-C-HHHHH-------hheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcc
Confidence 11 1 0 11222 234444442 22222221 11 1 12234677888899999877888
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-C-CeEEEEEeCcchHhh-ccceeE
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-T-SQFIIVSLKEGMFSN-ANVIFR 246 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~-~q~IiVTH~~~~~~~-ad~l~~ 246 (264)
+..||||||||++||++| +.+|+++||||||+|||+..+..+.++|+++++ + .+++++||....++. ||+++-
T Consensus 134 ~~~lS~G~kqrl~ia~aL----~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~i 209 (293)
T COG1131 134 VRTLSGGMKQRLSIALAL----LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVII 209 (293)
T ss_pred hhhcCHHHHHHHHHHHHH----hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEE
Confidence 999999999999998776 578899999999999999999999999999986 4 588999999887754 998887
Q ss_pred EEeeCCeEEE
Q psy17516 247 TKFVDGNSNV 256 (264)
Q Consensus 247 v~~~~g~s~i 256 (264)
+.+|...-
T Consensus 210 --l~~G~~~~ 217 (293)
T COG1131 210 --LNDGKIIA 217 (293)
T ss_pred --EeCCEEEE
Confidence 66886644
No 133
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.95 E-value=2.3e-28 Score=217.49 Aligned_cols=188 Identities=16% Similarity=0.091 Sum_probs=123.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHH-HHHhhhHHHHHHH-HHH----HHHh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLK-VIEELDEKKKIAL-REA----WLKV 125 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~-~I~~l~~~~~~~~-~~~----~~~v 125 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+.+... .. .+..++...+... +.. +|..
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG-AELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccc-cccccccCCHHHHHHhhhcceEEEEeCc
Confidence 35678999999999998 9999999999776 3456666554210 00 0222222111111 110 1111
Q ss_pred hhhh---hhHHHhhcCCC--cCCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 126 NTDF---GSIFSLLLPGS--QAKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 126 ~~~f---~~vf~~L~~g~--~~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
...+ .++++++..+. ............+..++..+++. ...++.+..|||||+|||+|||++ +.+|+++|
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral----~~~p~vll 171 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNL----VTRPRLVF 171 (253)
T ss_pred ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHH----hcCCCEEE
Confidence 0000 01222211000 00000011123456677788986 478889999999999999999886 47899999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
|||||++||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- |.+|..
T Consensus 172 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~--l~~G~i 227 (253)
T TIGR02323 172 MDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLV--MQQGRV 227 (253)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE--EECCEE
Confidence 9999999999999999999998753 689999999988775 7999988 668765
No 134
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-28 Score=240.41 Aligned_cols=196 Identities=20% Similarity=0.195 Sum_probs=136.2
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc----cchhHHHh
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM----TKKSIVES 98 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~----~~~~~~~~ 98 (264)
+.+++++.++|.. +.+++++||++++||+++ ||||||+++++++. +.|.+.+.
T Consensus 5 ~l~~~nl~~~~~~-----------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~ 67 (506)
T PRK13549 5 LLEMKNITKTFGG-----------------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFE 67 (506)
T ss_pred eEEEeeeEEEeCC-----------------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 4566777777851 346678999999999997 99999999997753 35666666
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-----hhHHHhhcCCCcCC----CCCCchhhHHHhHHHHcCCCcccccc
Q psy17516 99 DRAKLLKVIEELDEKKKIALREAWLKVNTDF-----GSIFSLLLPGSQAK----LSPPAGKDILDGLEVNVAFGGLWKES 169 (264)
Q Consensus 99 ~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-----~~vf~~L~~g~~~~----l~~~~~~~~~~~l~~~v~l~~~~~~~ 169 (264)
+.. +...+... ..+.....+.+.. -++++++..+.... .........+..++..+++.+..+++
T Consensus 68 g~~-----~~~~~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 140 (506)
T PRK13549 68 GEE-----LQASNIRD--TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP 140 (506)
T ss_pred CEE-----CCCCCHHH--HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc
Confidence 542 32222111 1111011111111 13444433221110 01111123456778889998888999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEE
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v 247 (264)
+.+|||||||||+||++++ .+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++-
T Consensus 141 ~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~- 215 (506)
T PRK13549 141 VGNLGLGQQQLVEIAKALN----KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICV- 215 (506)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEE-
Confidence 9999999999999998864 78999999999999999999999999999864 67899999998876 57999988
Q ss_pred EeeCCeE
Q psy17516 248 KFVDGNS 254 (264)
Q Consensus 248 ~~~~g~s 254 (264)
+++|..
T Consensus 216 -l~~G~i 221 (506)
T PRK13549 216 -IRDGRH 221 (506)
T ss_pred -EECCEE
Confidence 668753
No 135
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.95 E-value=5.5e-28 Score=215.12 Aligned_cols=184 Identities=20% Similarity=0.212 Sum_probs=126.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhh----------HHHHHHHHHH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELD----------EKKKIALREA 121 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~----------~~~~~~~~~~ 121 (264)
.+.+++||++++||+++ ||||||+++++++ ++.|.+.+.+.. +..++ ......++..
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQ-----LYHMPGRNGPLVPADEKHLRQMRNK 88 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----ccccccccccccccchhHHHHHhhC
Confidence 45678999999999997 9999999999775 345565555532 32211 1111112211
Q ss_pred ----HHHhhhhh-hhHHHhhcCCCc--CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 122 ----WLKVNTDF-GSIFSLLLPGSQ--AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 122 ----~~~v~~~f-~~vf~~L~~g~~--~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
+|...... .++++++..+.. ...........+..++..+|+.+..++.+.+|||||+||++|||+++ .+
T Consensus 89 i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~----~~ 164 (252)
T TIGR03005 89 IGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALA----MR 164 (252)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHH----cC
Confidence 11111111 134443321100 00111111234566777889988889999999999999999998864 78
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|+++||||||++||+.+...+.++|+++.+ +.++|+|||+...+ ..||+++- |++|..
T Consensus 165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~--l~~G~i 225 (252)
T TIGR03005 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCF--FDKGRI 225 (252)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE--EECCEE
Confidence 899999999999999999999999998764 67899999998876 67999987 678875
No 136
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=2.9e-28 Score=236.06 Aligned_cols=174 Identities=15% Similarity=0.113 Sum_probs=124.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||+|++|++++ ||||||+++++++ ++.|.+.+.+.. +...+... ++ +.+++
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~-----~~~~~~~~---~~-------~~i~~ 81 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSH-----ITRLSFEQ---LQ-------KLVSD 81 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcc-----cccCCHHH---HH-------HHhce
Confidence 35678999999999997 9999999999775 345555544432 22222111 11 11222
Q ss_pred HHHh----hc------CCCcCCCC--C-CchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL----LL------PGSQAKLS--P-PAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~----L~------~g~~~~l~--~-~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
+||. ++ .+.++... . ......+..++..+++.+..++++.+|||||||||+||++++ .+|+++
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~----~~p~ll 157 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALM----SEPDLL 157 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHH----cCCCEE
Confidence 2221 00 01111100 0 111234566778899988889999999999999999998874 688999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||||||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++- +++|..
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~--l~~G~i 213 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGV--LADCTL 213 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEE--EECCEE
Confidence 99999999999999999999999865 57899999998766 67999988 668864
No 137
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.6e-28 Score=215.23 Aligned_cols=181 Identities=17% Similarity=0.139 Sum_probs=126.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----H
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREA----W 122 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~ 122 (264)
.+++++||++++|++++ ||||||++++.++. ..|++.+.+.. +...+.. .++.. +
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~-----i~~~~~~---~~~~~i~~v~ 88 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD-----IFKMDVI---ELRRRVQMVF 88 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEE-----CCcCCHH---HHhccEEEEe
Confidence 45678999999999997 99999999997763 36666666642 3222211 11211 1
Q ss_pred HHhhhhh-hhHHHhhcCCCcC-CCCC--CchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 123 LKVNTDF-GSIFSLLLPGSQA-KLSP--PAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 123 ~~v~~~f-~~vf~~L~~g~~~-~l~~--~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
|.....+ .++++++..+... .... .+..+.+..++..+++. +..++++.+||||||||++|||+++ .+
T Consensus 89 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~----~~ 164 (250)
T PRK14247 89 QIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA----FQ 164 (250)
T ss_pred ccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh----cC
Confidence 2211111 1444443221111 1100 11123445667777874 3568899999999999999998864 78
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|+++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- |++|..
T Consensus 165 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i 223 (250)
T PRK14247 165 PEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAF--LYKGQI 223 (250)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE--EECCeE
Confidence 99999999999999999999999999987678899999998876 67999988 668765
No 138
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.2e-28 Score=219.40 Aligned_cols=183 Identities=21% Similarity=0.218 Sum_probs=129.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
...+++||++++||+++ ||||||+++++++ +.+|.+.+.+.. +. ........++.. +|....
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~-----~~-~~~~~~~~~~~~ig~v~q~~~~ 93 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP-----ID-YSRKGLMKLRESVGMVFQDPDN 93 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEE-----CC-CCcchHHHHHhhEEEEecCcch
Confidence 36678999999999998 9999999999775 446666666642 21 010011112211 122111
Q ss_pred h-h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 D-F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 ~-f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
. + .++++++..+.. ..............++..+|+.+..++++.+|||||+||++|||+++ .+|+++||||||
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~----~~p~lLilDEPt 169 (283)
T PRK13636 94 QLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV----MEPKVLVLDEPT 169 (283)
T ss_pred hhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCc
Confidence 1 1 244554432211 11111112234567777899999999999999999999999998864 788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|+++++ +.++|++||+...+. .||+++- |++|..
T Consensus 170 ~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~--l~~G~i 220 (283)
T PRK13636 170 AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFV--MKEGRV 220 (283)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999998864 679999999988774 8999988 668865
No 139
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.95 E-value=1e-27 Score=209.51 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=120.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhh-HHHHHHHHHhhhHHHHHHHHH-HHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESD-RAKLLKVIEELDEKKKIALRE-AWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~-~~~l~~~I~~l~~~~~~~~~~-~~~~v~~~f 129 (264)
.+++++||+|++||+++ ||||||+++++++ +..|.+.+.+ ... ..+..++......++. ....+.+..
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~--~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAW--VDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCc--cchhhcCHHHHHHHHhcceEEEeccc
Confidence 46678999999999997 9999999999776 3456665542 110 0122233222111211 010111111
Q ss_pred h-----hHHHhhcCCC-cCCCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 130 G-----SIFSLLLPGS-QAKLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 130 ~-----~vf~~L~~g~-~~~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
. ++++.+.... ..........+.+..++..+++.+ ..++++.+||||||||++||+++ +.+|+++||||
T Consensus 100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral----~~~p~llllDE 175 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGF----IADYPILLLDE 175 (224)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHH----hcCCCEEEEcC
Confidence 0 2222221100 001111111234456677889876 35788999999999999999886 47889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTK 248 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~ 248 (264)
||++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++.+|
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 176 PTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999998864 67899999998877 5899998754
No 140
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.4e-28 Score=215.17 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=127.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHH--HHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIA--LREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~--~~~~~~~v~~~f 129 (264)
.+++++||++++|++++ ||||||+++++++ +++|.+.+.+.. +...+.....+ +.-.++......
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQH-----IEGLPGHQIARMGVVRTFQHVRLFR 93 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEE-----CCCCCHHHHHhcCeEEeccCcccCC
Confidence 46678999999999997 9999999999776 346666666542 32222111111 100122221111
Q ss_pred h-hHHHhhcCCCcC--------CC------CCC--chhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhc
Q psy17516 130 G-SIFSLLLPGSQA--------KL------SPP--AGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLF 192 (264)
Q Consensus 130 ~-~vf~~L~~g~~~--------~l------~~~--~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~ 192 (264)
. ++++++..+... .. ... ........++..+|+.+..++++.+||||||||++||+++ +
T Consensus 94 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al----~ 169 (255)
T PRK11300 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCM----V 169 (255)
T ss_pred CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHH----h
Confidence 1 455543322100 00 000 1112345666778998888999999999999999999876 4
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.+|+++||||||++||+.++..+.++|.++.+ +.++|++||+...+ +.||+++- +.+|..
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~g~i 232 (255)
T PRK11300 170 TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYV--VNQGTP 232 (255)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEE--EECCeE
Confidence 78899999999999999999999999998764 57899999999876 67999988 568764
No 141
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.95 E-value=2.2e-28 Score=218.27 Aligned_cols=185 Identities=15% Similarity=0.179 Sum_probs=130.0
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHH-HHHHHHHhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIA-LREAWLKVNTDF 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~-~~~~~~~v~~~f 129 (264)
+.+++++||++++||+++ ||||||+++++++ ++.|++.+.+.. +...+...... ..-.++.....+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~i~~~~q~~~~~~ 88 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVD-----LHGLSRRARARRVALVEQDSDTAV 88 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEE-----cccCCHHHHhhheEEecccCccCC
Confidence 346778999999999997 9999999999775 345666665542 33322211110 100112211111
Q ss_pred -hhHHHhhcCCCc-C-CC---CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 130 -GSIFSLLLPGSQ-A-KL---SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 130 -~~vf~~L~~g~~-~-~l---~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
.++++++..+.. . .. ........+..++..+++.+..++++.+|||||+||++||++++ .+|+++|||||
T Consensus 89 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~----~~p~llllDEP 164 (256)
T TIGR03873 89 PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALA----QEPKLLLLDEP 164 (256)
T ss_pred CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCc
Confidence 256665533211 1 00 01111234566777889988889999999999999999998864 68899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|++||+.+...+.++|+++.+ +.++|++||+...+ +.||+++- |.+|..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i 215 (256)
T TIGR03873 165 TNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVV--LDGGRV 215 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EeCCCE
Confidence 999999999999999998865 67899999999887 68999988 668764
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1e-27 Score=215.28 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=128.3
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHH-HHHHHHHHhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKI-ALREAWLKVNTDF 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~-~~~~~~~~v~~~f 129 (264)
+.+++++||++.+|++++ ||||||+++++++. ..|.+.+.+.. +...+..... .+.-.+|.....+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~i~~v~q~~~~~~ 94 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH-----IQHYASKEVARRIGLLAQNATTPG 94 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEE-----hhhCCHHHHhhheEEeeccCcCCC
Confidence 346778999999999997 99999999997753 35666655532 3222211111 1100122211111
Q ss_pred -hhHHHhhcCCCcCC--C-C-C-CchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 130 -GSIFSLLLPGSQAK--L-S-P-PAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 130 -~~vf~~L~~g~~~~--l-~-~-~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
.++++++..+.... + . . ......+..++..+++.+..++++.+|||||+||++|||+++ .+|+++|||||
T Consensus 95 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~----~~p~llllDEP 170 (265)
T PRK10253 95 DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA----QETAIMLLDEP 170 (265)
T ss_pred CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh----cCCCEEEEeCc
Confidence 14455443221110 0 0 0 111234566777889988889999999999999999998864 68899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeE
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNS 254 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s 254 (264)
|++||+.++..+.++|.++.+ +.++|++||+... .+.||+++- +++|..
T Consensus 171 t~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~--l~~G~i 222 (265)
T PRK10253 171 TTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIA--LREGKI 222 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999998864 6789999999875 578999988 668764
No 143
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=7e-28 Score=210.84 Aligned_cols=182 Identities=18% Similarity=0.174 Sum_probs=124.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHH-HHHHHHHHHhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKK-IALREAWLKVNTDFG 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~-~~~~~~~~~v~~~f~ 130 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+.+.. +...+.... ......++...-...
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP-----ISQYEHKYLHSKVSLVGQEPVLFAR 102 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCc-----hHHcCHHHHHhhEEEEecccHHHhh
Confidence 46678999999999998 9999999999776 346666665542 322221111 000001121110012
Q ss_pred hHHHhhcCCCcCCCCCCchh-----hHHHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 131 SIFSLLLPGSQAKLSPPAGK-----DILDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 131 ~vf~~L~~g~~~~l~~~~~~-----~~~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
++++++..+... ....... ..+..++..+ |+....++++.+|||||+||++||+++ +.+|+++|||||
T Consensus 103 tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral----~~~p~llllDEP 177 (226)
T cd03248 103 SLQDNIAYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL----IRNPQVLILDEA 177 (226)
T ss_pred hHHHHhccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH----hcCCCEEEEeCC
Confidence 455544322111 0000000 0123444555 677777888999999999999999886 478899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCe
Q psy17516 204 DAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGN 253 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~ 253 (264)
|++||+.++..+.++|+++.++.++|+|||+...+..||+++- +.+|.
T Consensus 178 t~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~--l~~g~ 225 (226)
T cd03248 178 TSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILV--LDGGR 225 (226)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEE--ecCCc
Confidence 9999999999999999998767889999999999888999988 55663
No 144
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=211.49 Aligned_cols=178 Identities=20% Similarity=0.154 Sum_probs=125.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++|++++ ||||||+++++++ +..|.+.+.+.+ +...+.. .++.....+.+.
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~~~---~~~~~i~~~~q~~~~ 88 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVD-----IKTIDVI---DLRRKIGMVFQQPHL 88 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----hhhcChH---HhhhcEEEEecCchh
Confidence 46678999999999997 9999999999775 446666666542 3222211 111111111111
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
| .++++++..+... . ......+..++..+++. +..++++.+|||||+||++||++++ .+|+++||||||++
T Consensus 89 ~~~tv~e~l~~~~~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~ 161 (241)
T PRK14250 89 FEGTVKDNIEYGPML--K-GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA----NNPEVLLLDEPTSA 161 (241)
T ss_pred chhhHHHHHhcchhh--c-CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccc
Confidence 1 2344443221110 0 11122345667788996 5778899999999999999998864 78899999999999
Q ss_pred CCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 207 LDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |++|..
T Consensus 162 LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~--l~~G~i 210 (241)
T PRK14250 162 LDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAF--LNKGIL 210 (241)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEE--EeCCEE
Confidence 999999999999998763 68999999999875 57999988 668864
No 145
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-28 Score=239.50 Aligned_cols=196 Identities=16% Similarity=0.121 Sum_probs=136.7
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+.+++++.++|.. +.+++++||++++||+++ ||||||+++++++ ++.|.+.+.+.
T Consensus 5 ~l~~~~l~~~~~~-----------------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 67 (510)
T PRK09700 5 YISMAGIGKSFGP-----------------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI 67 (510)
T ss_pred eEEEeeeEEEcCC-----------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCE
Confidence 3556677777751 345678999999999997 9999999999775 34666666654
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhh-----hhHHHhhcCCCcC-----CC---CCCchhhHHHhHHHHcCCCcccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDF-----GSIFSLLLPGSQA-----KL---SPPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-----~~vf~~L~~g~~~-----~l---~~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
. +...+... ..+.....+.++. -++++++..+... .. ...+....+..++..+|+.+..+
T Consensus 68 ~-----i~~~~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 140 (510)
T PRK09700 68 N-----YNKLDHKL--AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD 140 (510)
T ss_pred E-----CCCCCHHH--HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcc
Confidence 2 33332211 1111011111111 1344444322110 00 00111234567788899998889
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhcccee
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIF 245 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~ 245 (264)
+++.+|||||||||+||++++ .+|+++||||||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++
T Consensus 141 ~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~ 216 (510)
T PRK09700 141 EKVANLSISHKQMLEIAKTLM----LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYT 216 (510)
T ss_pred cchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999998864 78999999999999999999999999999865 67899999998876 5799998
Q ss_pred EEEeeCCeE
Q psy17516 246 RTKFVDGNS 254 (264)
Q Consensus 246 ~v~~~~g~s 254 (264)
- +.+|..
T Consensus 217 ~--l~~G~i 223 (510)
T PRK09700 217 V--MKDGSS 223 (510)
T ss_pred E--EECCEE
Confidence 8 568764
No 146
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.5e-28 Score=218.85 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=128.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVN- 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~- 126 (264)
..++++||+|++||+++ ||||||++++.++ ++.|.+.+.+.. +..... ...++.. +|...
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~-----i~~~~~--~~~~~~~i~~v~q~~~~ 96 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD-----TSDEEN--LWDIRNKAGMVFQNPDN 96 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe-----cccccc--HHHHhhheEEEecChhh
Confidence 46778999999999997 9999999999775 346666666542 221110 0111111 12211
Q ss_pred hhhh-hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 127 TDFG-SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 127 ~~f~-~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.-+. .+.+++..+.. ...........+..++..+|+.+..++++.+|||||+||++||++++ .+|+++||||||
T Consensus 97 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt 172 (280)
T PRK13633 97 QIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA----MRPECIIFDEPT 172 (280)
T ss_pred hhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCc
Confidence 0111 23333321111 11111112234567777889998899999999999999999998864 788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
++||+.++..+.++|+++++ +.++|+|||+...+..||+++- +.+|...
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~--l~~G~i~ 223 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIV--MDSGKVV 223 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEE--EECCEEE
Confidence 99999999999999998863 6789999999998888999988 5687653
No 147
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.95 E-value=4e-28 Score=207.27 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=114.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVN 126 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~ 126 (264)
+.+++++||+|++||+++ ||||||+++++++ ++.|.+.+++.+ +. ........++.. +|...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~-~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEP-----LD-YSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEE-----cc-ccccchHHHHhhEEEEecChh
Confidence 346778999999999998 9999999999775 345666665542 21 111111112211 12110
Q ss_pred -hhh-hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 127 -TDF-GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 127 -~~f-~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
..| .++++++..+... ..........+..++..+++.+..++++.+|||||+||++|||+++ .+|+++|||||
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllDEP 154 (190)
T TIGR01166 79 DQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVA----MRPDVLLLDEP 154 (190)
T ss_pred hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCC
Confidence 011 1344443211100 0111111234566777889988889999999999999999998864 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM 237 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~ 237 (264)
|++||+.++..+.++|+++.+ +.++|+|||+...
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998864 6789999999753
No 148
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=215.24 Aligned_cols=182 Identities=18% Similarity=0.129 Sum_probs=127.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||++++||+++ ||||||+++++++ +..|.+.+.+.. +...+. ..++.....+.++.
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~-----~~~~~~---~~~~~~i~~v~q~~~~ 94 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQA-----ITDDNF---EKLRKHIGIVFQNPDN 94 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-----CCcCCH---HHHHhheeEEEeChHH
Confidence 46678999999999997 9999999999776 346666666542 322221 11221111111111
Q ss_pred ----hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 130 ----GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 130 ----~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.++.+++..+.. ...........+..++..+++.+..++++.+|||||+||++|||+++ .+|+++||||||
T Consensus 95 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~----~~p~lllLDEPt 170 (269)
T PRK13648 95 QFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLA----LNPSVIILDEAT 170 (269)
T ss_pred hcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCc
Confidence 122222211110 01111111234567778889988889999999999999999998864 788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+..||+++- +.+|...
T Consensus 171 ~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~--l~~G~i~ 221 (269)
T PRK13648 171 SMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIV--MNKGTVY 221 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEE--EECCEEE
Confidence 99999999999999998764 6789999999988878999988 6687653
No 149
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-27 Score=227.98 Aligned_cols=192 Identities=25% Similarity=0.290 Sum_probs=145.2
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~~ 100 (264)
..+++++.++|... +...++++||++++||-++ ||||||+.++.+ .+++|++..++.
T Consensus 336 ~l~~~~vsF~y~~~---------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~ 400 (573)
T COG4987 336 ALELRNVSFTYPGQ---------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV 400 (573)
T ss_pred eeeeccceeecCCC---------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCc
Confidence 45788888888844 3466778999999999887 999999998854 567888888886
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhh---h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcc-----------
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTD---F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGL----------- 165 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~----------- 165 (264)
+ +..++++. +++++..++|. | +++-++|..+. +...++.+..++.+||+.+.
T Consensus 401 ~-----~~~l~~~~---~~e~i~vl~Qr~hlF~~Tlr~NL~lA~-----~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~ 467 (573)
T COG4987 401 E-----IASLDEQA---LRETISVLTQRVHLFSGTLRDNLRLAN-----PDASDEELWAALQQVGLEKLLESAPDGLNTW 467 (573)
T ss_pred C-----hhhCChhh---HHHHHhhhccchHHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHcCHHHHHHhChhhhhch
Confidence 4 77777643 34444333333 2 45556654321 11122334445556665443
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhcccee
Q psy17516 166 WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 166 ~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~ 245 (264)
...-...|||||+||+||||++ +++.|+++|||||.|||+.+..+++++|.+..++.|+|+||||..-.+.||+|+
T Consensus 468 lge~G~~LSGGE~rRLAlAR~L----L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi 543 (573)
T COG4987 468 LGEGGRRLSGGERRRLALARAL----LHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII 543 (573)
T ss_pred hccCCCcCCchHHHHHHHHHHH----HcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEE
Confidence 2344578999999999999875 679999999999999999999999999999988999999999999999999999
Q ss_pred EEEeeCCeE
Q psy17516 246 RTKFVDGNS 254 (264)
Q Consensus 246 ~v~~~~g~s 254 (264)
- |++|..
T Consensus 544 v--l~~Gki 550 (573)
T COG4987 544 V--LDNGKI 550 (573)
T ss_pred E--EECCee
Confidence 8 778865
No 150
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.2e-28 Score=217.39 Aligned_cols=184 Identities=19% Similarity=0.198 Sum_probs=125.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhH-HHHHHHHHHHHHhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDE-KKKIALREAWLKVNTD-- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~-~~~~~~~~~~~~v~~~-- 128 (264)
.+++++||++++|++++ ||||||+++++++ +..|.+.+.+.. +..... .....++.....+.+.
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~-----i~~~~~~~~~~~~~~~i~~~~q~~~ 95 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTL-----ITSTSKNKDIKQIRKKVGLVFQFPE 95 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----ccccccccCHHHHHhheEEEeeChh
Confidence 35678999999999997 9999999999775 345666666542 221110 0011122111111111
Q ss_pred ---h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 129 ---F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 129 ---f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
| .++++++..+.. ...........+..++..+++. ...++++.+||||||||++||++++ .+|+++||||
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~----~~p~lllLDE 171 (280)
T PRK13649 96 SQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA----MEPKILVLDE 171 (280)
T ss_pred hhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeC
Confidence 1 144444322110 0111111123345666778996 4678899999999999999998875 6889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- +.+|..
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~--l~~G~i 223 (280)
T PRK13649 172 PTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYV--LEKGKL 223 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999998864 67899999998876 67999988 668764
No 151
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=1.9e-28 Score=238.78 Aligned_cols=189 Identities=19% Similarity=0.162 Sum_probs=135.1
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+.+++++.++|.. +.+++++||+|++|++++ |||||||++++++ +..|.+.+.+.
T Consensus 11 ~l~~~~l~~~~~~-----------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 73 (510)
T PRK15439 11 LLCARSISKQYSG-----------------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN 73 (510)
T ss_pred eEEEEeEEEEeCC-----------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 4556677777751 345678999999999997 9999999999775 34566666653
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC------C-CCCchhhHHHhHHHHcCCCcccccccC
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK------L-SPPAGKDILDGLEVNVAFGGLWKESLG 171 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~------l-~~~~~~~~~~~l~~~v~l~~~~~~~~~ 171 (264)
. +...+... .+ ...++++||. ++++.++. . ......+.+..++..+++.+..++++.
T Consensus 74 ~-----~~~~~~~~---~~------~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (510)
T PRK15439 74 P-----CARLTPAK---AH------QLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAG 139 (510)
T ss_pred E-----CCCCCHHH---HH------hCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChh
Confidence 2 32222111 11 0122333332 12211110 0 011122345667788999988899999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEe
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKF 249 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~ 249 (264)
+|||||||||+||++|+ .+|+++||||||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++- |
T Consensus 140 ~LSgG~~qrv~la~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~--l 213 (510)
T PRK15439 140 SLEVADRQIVEILRGLM----RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISV--M 213 (510)
T ss_pred hCCHHHHHHHHHHHHHH----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--E
Confidence 99999999999998874 68999999999999999999999999999864 67899999998865 67999988 6
Q ss_pred eCCeE
Q psy17516 250 VDGNS 254 (264)
Q Consensus 250 ~~g~s 254 (264)
.+|..
T Consensus 214 ~~G~i 218 (510)
T PRK15439 214 RDGTI 218 (510)
T ss_pred ECCEE
Confidence 68865
No 152
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=7e-28 Score=237.95 Aligned_cols=177 Identities=23% Similarity=0.239 Sum_probs=126.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh-ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA-MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
+..++++||++++|+.++ ||||||+++++++ |++|++.+++.+ +.+++. ..+|+....|.|+
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~-----i~~~~~---~~lr~~i~~v~Q~~~L 434 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIE-----LRELDP---ESWRKHLSWVGQNPQL 434 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEe-----cccCCH---HHHHhheEEecCCCcC
Confidence 456789999999999998 9999999988553 667777777753 556653 3344333333333
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-------CCc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-------FGG----LWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-------l~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
| +++.+++..|.. . .. .++ ....+..++ +|+ ........||||||||+|||||+ +++||
T Consensus 435 F~~TI~eNI~~g~~-~--~~-~ee-i~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl----l~~~~ 505 (588)
T PRK11174 435 PHGTLRDNVLLGNP-D--AS-DEQ-LQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL----LQPCQ 505 (588)
T ss_pred CCcCHHHHhhcCCC-C--CC-HHH-HHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH----hcCCC
Confidence 1 355555544421 0 11 111 111122222 222 22344568999999999999886 57999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++|||||||+||+.+...+.+.|.++.++.|+|+||||..++..||+++- +++|..
T Consensus 506 IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iiv--l~~G~i 561 (588)
T PRK11174 506 LLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWV--MQDGQI 561 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEE--EeCCeE
Confidence 99999999999999999999999998888999999999999999999998 668864
No 153
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=4.5e-28 Score=236.43 Aligned_cols=189 Identities=17% Similarity=0.178 Sum_probs=125.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----ccchhHHHhh----------------------HHHHH---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----MTKKSIVESD----------------------RAKLL--- 104 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~~~~~~~~~~----------------------~~~l~--- 104 (264)
.+++++||++++|++++ ||||||+++++++ ++.|.+.+.+ +.++.
T Consensus 14 ~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 93 (520)
T TIGR03269 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEE 93 (520)
T ss_pred EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccc
Confidence 46678999999999998 9999999999876 4456554431 11100
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhh----hh--hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHH
Q psy17516 105 KVIEELDEKKKIALREAWLKVNTD----FG--SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQ 177 (264)
Q Consensus 105 ~~I~~l~~~~~~~~~~~~~~v~~~----f~--~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGe 177 (264)
..+...+......++.....+.++ |. ++++++..+.. ......+....+..++..+|+.+..++++.+|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 173 (520)
T TIGR03269 94 VDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGE 173 (520)
T ss_pred hhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHH
Confidence 001111111111122111111111 11 23333211100 011111122345677888999888899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 178 RSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 178 kqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||||+||++++ .+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |++|..
T Consensus 174 ~qrv~iA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~--l~~G~i 247 (520)
T TIGR03269 174 KQRVVLARQLA----KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW--LENGEI 247 (520)
T ss_pred HHHHHHHHHHh----cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE--EeCCEE
Confidence 99999998864 78899999999999999999999999999853 67899999999876 57999988 678864
No 154
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.95 E-value=1.3e-27 Score=209.77 Aligned_cols=187 Identities=16% Similarity=0.138 Sum_probs=133.0
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
+..++++.+|. .+.+++++||++++|++++ ||||||+++++++ +..|.+.+.+..
T Consensus 23 l~~~~~~~~~~-----------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 85 (224)
T cd03220 23 LGILGRKGEVG-----------------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV 85 (224)
T ss_pred hhhhhhhhhcC-----------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 66777788887 2456778999999999998 9999999999775 345666655532
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHH
Q psy17516 102 KLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSL 180 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqr 180 (264)
+.... ... .+ ....++++++..+.. .........+....++..+++.+..++++.+||||||||
T Consensus 86 -----~~~~~----~~~--~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 150 (224)
T cd03220 86 -----SSLLG----LGG--GF----NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKAR 150 (224)
T ss_pred -----chhhc----ccc--cC----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence 11100 000 00 001234444321110 011111112345566777899888899999999999999
Q ss_pred HHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 181 VALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 181 vaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++|||++ +.+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- +.+|..
T Consensus 151 v~laral----~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i 220 (224)
T cd03220 151 LAFAIAT----ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALV--LEKGKI 220 (224)
T ss_pred HHHHHHH----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 9999886 478999999999999999999999999998764 57899999998876 57999988 568864
No 155
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1e-28 Score=219.88 Aligned_cols=202 Identities=19% Similarity=0.111 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc-------c
Q psy17516 25 DKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------T 91 (264)
Q Consensus 25 n~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~ 91 (264)
|+..+.+++++.+.|.. +.+++++||++++||+++ ||||||+++++++. .
T Consensus 2 ~~~~~i~~~~l~~~~~~-----------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~ 64 (253)
T PRK14261 2 TMEIILSTKNLNLWYGE-----------------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI 64 (253)
T ss_pred CccceEEEeeeEEEECC-----------------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCc
Confidence 45556677788888862 346778999999999997 99999999997652 2
Q ss_pred chhHHHhhHHHHHHHHHhhhHHHHHHHHH----HHHHhhhhhhhHHHhhcCCCcC-CCCC-CchhhHHHhHHHHcCCC--
Q psy17516 92 KKSIVESDRAKLLKVIEELDEKKKIALRE----AWLKVNTDFGSIFSLLLPGSQA-KLSP-PAGKDILDGLEVNVAFG-- 163 (264)
Q Consensus 92 ~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~~~v~~~f~~vf~~L~~g~~~-~l~~-~~~~~~~~~l~~~v~l~-- 163 (264)
.|.+.+.+.. +...+. ....++. .+|...-...++++++..+... .... ...+..+..++..+++.
T Consensus 65 ~G~i~~~g~~-----~~~~~~-~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (253)
T PRK14261 65 TGDILYNGEN-----IMDSGA-DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE 138 (253)
T ss_pred ceEEEECCEE-----cccccc-chhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh
Confidence 4666666542 222110 0011111 1111110002444443322111 0000 11122344455566653
Q ss_pred --cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hh
Q psy17516 164 --GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SN 240 (264)
Q Consensus 164 --~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ 240 (264)
...++.+.+||||||||++|||+++ .+|+++||||||++||+.++..+.++|+++.++.++|++||+.... +.
T Consensus 139 l~~~~~~~~~~LS~G~~qrv~laral~----~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~ 214 (253)
T PRK14261 139 VKDRLHDSALSLSGGQQQRLCIARTLA----VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARV 214 (253)
T ss_pred hHHHhhcChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhh
Confidence 3467889999999999999998864 6889999999999999999999999999987678999999998876 67
Q ss_pred ccceeEEEeeCCeEE
Q psy17516 241 ANVIFRTKFVDGNSN 255 (264)
Q Consensus 241 ad~l~~v~~~~g~s~ 255 (264)
||+++- +.+|...
T Consensus 215 ~d~v~~--l~~G~i~ 227 (253)
T PRK14261 215 SDYTGF--MYLGKLI 227 (253)
T ss_pred CCEEEE--EECCEEE
Confidence 999987 6688753
No 156
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.1e-28 Score=226.67 Aligned_cols=174 Identities=19% Similarity=0.225 Sum_probs=125.3
Q ss_pred ccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHH-HHHHHHHHHHHhhhhhhhHHH
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEK-KKIALREAWLKVNTDFGSIFS 134 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~-~~~~~~~~~~~v~~~f~~vf~ 134 (264)
++||++++||+++ |||||||++++++ ++.|.+.+.+.. +...... .....+ +.++++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~-----~~~~~~~~~~~~~~-------~~i~~v~q 83 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRV-----LFDAEKGICLPPEK-------RRIGYVFQ 83 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----ccccccccccchhh-------CCEEEEcC
Confidence 6999999999998 9999999999876 345666665532 2211000 000111 23444454
Q ss_pred h--hcCCCcCCC----C-CCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 135 L--LLPGSQAKL----S-PPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 135 ~--L~~g~~~~l----~-~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
. +++..+... . .....+....++..+++.+..++++.+|||||||||+|||+++ .+|+++||||||++|
T Consensus 84 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~----~~p~llLLDEPts~L 159 (352)
T PRK11144 84 DARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALL----TAPELLLMDEPLASL 159 (352)
T ss_pred CcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccC
Confidence 3 333322210 0 0111234566777889998899999999999999999998875 688999999999999
Q ss_pred CHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 208 DLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- |++|...
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~--l~~G~i~ 208 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVV--LEQGKVK 208 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEE--EeCCEEE
Confidence 99999999999998764 57899999998754 67999988 6688653
No 157
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=1.3e-27 Score=233.77 Aligned_cols=184 Identities=15% Similarity=0.167 Sum_probs=124.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHH-HHHHh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALRE-AWLKV 125 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~-~~~~v 125 (264)
.+++++||++++||+++ ||||||+++++++. +.|++.+.+.. +...+......++. ....+
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~-----i~~~~~~~~~~~~~~~ig~v 97 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGES-----LLHASEQTLRGVRGNKIAMI 97 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEe-----cccCCHHHHHHHhcCceEEE
Confidence 35677999999999998 99999999997753 25666665542 33332211111210 01111
Q ss_pred hhh----h---hhHHHhhcCCC--cCCCCCCchhhHHHhHHHHcCCCc---ccccccCCCCHHHHHHHHHHHHHHHhhcC
Q psy17516 126 NTD----F---GSIFSLLLPGS--QAKLSPPAGKDILDGLEVNVAFGG---LWKESLGELSGGQRSLVALSLVLAMLLFK 193 (264)
Q Consensus 126 ~~~----f---~~vf~~L~~g~--~~~l~~~~~~~~~~~l~~~v~l~~---~~~~~~~~LSGGekqrvaiA~~la~~l~~ 193 (264)
.++ + ..+.+.+..+. ............+..++..+|+.+ ..++++.+|||||||||+|||+++ .
T Consensus 98 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~----~ 173 (529)
T PRK15134 98 FQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL----T 173 (529)
T ss_pred ecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHh----c
Confidence 111 0 01111111000 001111112234567777889975 358899999999999999998864 7
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+|+++||||||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++- |++|..
T Consensus 174 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~--l~~G~i 235 (529)
T PRK15134 174 RPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAV--MQNGRC 235 (529)
T ss_pred CCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEE--EECCEE
Confidence 8999999999999999999999999999763 67899999998876 57999988 678864
No 158
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-28 Score=221.56 Aligned_cols=193 Identities=17% Similarity=0.129 Sum_probs=129.4
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh-------ccchh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA-------MTKKS 94 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-------~~~~~ 94 (264)
++.+++++.++|.. +.+++++||+|++||+++ ||||||+++++++ ++.|.
T Consensus 12 ~~l~i~nl~~~~~~-----------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~ 74 (269)
T PRK14259 12 IIISLQNVTISYGT-----------------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR 74 (269)
T ss_pred ceEEEEeEEEEECC-----------------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 44566677777751 245678999999999997 9999999999776 24566
Q ss_pred HHHhhHHHHHHHHHh--hhHHHHHHHHHHHHHhhhh---h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC----Cc
Q psy17516 95 IVESDRAKLLKVIEE--LDEKKKIALREAWLKVNTD---F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF----GG 164 (264)
Q Consensus 95 ~~~~~~~~l~~~I~~--l~~~~~~~~~~~~~~v~~~---f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l----~~ 164 (264)
+.+.+.. +.. .+. ..++.....+.++ | .++.+++..+....-......+....++..+++ .+
T Consensus 75 v~~~g~~-----i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~ 146 (269)
T PRK14259 75 VLFDGTD-----LYDPRVDP---VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD 146 (269)
T ss_pred EEECCEE-----cccccCCH---HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh
Confidence 6665532 211 111 1112111111111 1 244554432211100011112233445556665 34
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccc
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANV 243 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~ 243 (264)
..++++.+||||||||++|||++ +.+|+++||||||++||+.++..+.++|+++.++.++|+|||+...+ ..||+
T Consensus 147 ~~~~~~~~LS~G~~qrl~laral----~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~ 222 (269)
T PRK14259 147 KLNESGYSLSGGQQQRLCIARTI----AIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDM 222 (269)
T ss_pred hhCCCcccCCHHHHHHHHHHHHH----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 56888999999999999999886 47899999999999999999999999999987678899999998765 78999
Q ss_pred eeEEEeeC
Q psy17516 244 IFRTKFVD 251 (264)
Q Consensus 244 l~~v~~~~ 251 (264)
++- |++
T Consensus 223 i~~--l~~ 228 (269)
T PRK14259 223 TAF--FNA 228 (269)
T ss_pred EEE--Eec
Confidence 988 544
No 159
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=4.6e-28 Score=221.65 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=127.4
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
+.+++++||++++||+++ ||||||+++++++ ++.|.+.+.+.. +.... ..++ +.++
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~-----~~~~~----~~~~-------~~ig 78 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED-----VLQNP----KEVQ-------RNIG 78 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----cccCh----HHHH-------hceE
Confidence 346778999999999998 9999999999775 446666666642 22211 1122 1223
Q ss_pred hHHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 131 SIFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 131 ~vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
++++. ++++.+. .....+..+....++..+|+.+..++.+..||||||||++||+++ +.+|++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al----~~~p~l 154 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL----IHDPKV 154 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHH----hcCCCE
Confidence 33332 1222111 011111123456777788999888999999999999999999876 478999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
+||||||++||+.++..+.++|++++++.++|++||+...+ +.||+++- +.+|...
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~--l~~G~i~ 211 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVII--INKGKIV 211 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999999999987778899999998855 67999987 5577654
No 160
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=3.8e-28 Score=215.17 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=120.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+++++||+|++|++++ ||||||+++++++ +.+|++.+.+.. +..++..... +..+..+.+..
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~-----~~~~~~~~~~--~~~i~~~~q~~ 87 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD-----LLELSPEDRA--GEGIFMAFQYP 87 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCc-----cccCCHHHHh--hcceEEEecCc
Confidence 46678999999999997 9999999999876 456666666642 3333221111 10000011110
Q ss_pred ------------hhHHHhhcCCCcCC-CCCCchhhHHHhHHHHcCCC-cccccccC-CCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 130 ------------GSIFSLLLPGSQAK-LSPPAGKDILDGLEVNVAFG-GLWKESLG-ELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 130 ------------~~vf~~L~~g~~~~-l~~~~~~~~~~~l~~~v~l~-~~~~~~~~-~LSGGekqrvaiA~~la~~l~~~ 194 (264)
..++..+....... +......+.+..++..++++ +..++.+. +||||||||++|||++ +++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral----~~~ 163 (248)
T PRK09580 88 VEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA----VLE 163 (248)
T ss_pred hhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH----HcC
Confidence 00111110000000 00001123445566677885 45566665 8999999999999886 478
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhh--ccceeEEEeeCCeE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSN--ANVIFRTKFVDGNS 254 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~--ad~l~~v~~~~g~s 254 (264)
|+++||||||++||+.++..+.++|+++++ +.++|+|||+...... ||+++- +.+|..
T Consensus 164 p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~--l~~g~i 224 (248)
T PRK09580 164 PELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV--LYQGRI 224 (248)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEE--EECCeE
Confidence 999999999999999999999999998865 6789999999988875 899887 667754
No 161
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=7.1e-28 Score=235.60 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=128.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF--- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f--- 129 (264)
.+++++||+|++||+++ ||||||+++++++. .+|.+.+.+.. +..++......++..+..+.+..
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~-----i~~~~~~~~~~~~~~i~~v~q~~~~~ 374 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQP-----LHNLNRRQLLPVRHRIQVVFQDPNSS 374 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEE-----ccccchhhHHHhhhceEEEEeCchhh
Confidence 45678999999999998 99999999997754 45666666532 33332211111221111112211
Q ss_pred ----hhHHHhhcCCCcCC---CCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee
Q psy17516 130 ----GSIFSLLLPGSQAK---LSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201 (264)
Q Consensus 130 ----~~vf~~L~~g~~~~---l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD 201 (264)
-++++++..+.... .........+..++..+++. +..++++.+|||||||||+||++++ .+|+++|||
T Consensus 375 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~----~~p~llllD 450 (529)
T PRK15134 375 LNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALI----LKPSLIILD 450 (529)
T ss_pred cCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHh----CCCCEEEee
Confidence 13444332111000 11111223456777788997 5678999999999999999998864 789999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 202 EVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|||++||+.++..+.++|+++++ +.++|+|||+...+ +.||+++- |++|..
T Consensus 451 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~--l~~G~i 504 (529)
T PRK15134 451 EPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIV--LRQGEV 504 (529)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEE--EECCEE
Confidence 99999999999999999998864 57899999998866 57999998 678864
No 162
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=234.47 Aligned_cols=179 Identities=18% Similarity=0.221 Sum_probs=126.7
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+.+++++||++++|+.++ ||||||+++++++ |++|.+.+++.+ +..++.. .++..+..++|+.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~-----i~~~~~~---~~~~~i~~v~Q~~~ 427 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD-----LRDYTLA---SLRNQVALVSQNVH 427 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE-----hhhcCHH---HHHhhceEEccCce
Confidence 457889999999999998 9999999999775 345677776643 5555532 3443333333332
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-------CCcccc----cccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-------FGGLWK----ESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-------l~~~~~----~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+++.+++..|... ..+ ++.....+..+| +++..+ .....||||||||++|||++ +++|
T Consensus 428 lf~~Ti~~Ni~~~~~~---~~~-~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal----l~~~ 499 (582)
T PRK11176 428 LFNDTIANNIAYARTE---QYS-REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL----LRDS 499 (582)
T ss_pred eecchHHHHHhcCCCC---CCC-HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH----HhCC
Confidence 3455555433211 011 122222233333 222222 33467999999999999886 5789
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|+++|||||++||+.+...+.+.|.+..++.|+|+||||..++..||+++- +++|...
T Consensus 500 ~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~--l~~g~i~ 557 (582)
T PRK11176 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILV--VEDGEIV 557 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999999999998778899999999999999999998 6688653
No 163
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.5e-28 Score=216.98 Aligned_cols=181 Identities=16% Similarity=0.127 Sum_probs=129.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVN- 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~- 126 (264)
.+++++||++++||+++ ||||||+++++++ +..|++.+.+.. +...+. ..++.. +|...
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----i~~~~~---~~~~~~i~~v~q~~~~ 92 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGEL-----LTAENV---WNLRRKIGMVFQNPDN 92 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE-----CCcCCH---HHHhcceEEEEECHHH
Confidence 36778999999999998 9999999999765 346666666542 222111 112211 12211
Q ss_pred hhh-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 127 TDF-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 127 ~~f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
..+ .++++++..+.. .........+.+..++..+++.+..++++.+|||||+||++|||+++ .+|+++||||||
T Consensus 93 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~----~~p~llllDEPt 168 (277)
T PRK13642 93 QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA----LRPEIIILDEST 168 (277)
T ss_pred hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCc
Confidence 011 244444432211 11111111234566777889988889999999999999999998875 688999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|+++++ +.++|+|||+...+..||+++- |++|..
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~--l~~G~i 218 (277)
T PRK13642 169 SMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILV--MKAGEI 218 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE--EECCEE
Confidence 99999999999999998864 6799999999998888999988 668765
No 164
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.6e-28 Score=214.76 Aligned_cols=184 Identities=18% Similarity=0.106 Sum_probs=125.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++||+++ ||||||+++++++. +.|++.+.+.. +...+ .....++.....+.
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~-----~~~~~-~~~~~~~~~i~~~~ 100 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN-----ILTPK-QDIALLRAKVGMVF 100 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE-----ccccc-cchHHHhcceEEEe
Confidence 46678999999999997 99999999998763 35666665532 21110 01111221111111
Q ss_pred hh---h-hhHHHhhcCCCcC--CCCCCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQA--KLSPPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~~--~l~~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++ | .++++++..+... ........+....++..+++. +..++.+.+|||||+||++|||+++ .+|+
T Consensus 101 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~----~~p~ 176 (260)
T PRK10744 101 QKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA----IRPE 176 (260)
T ss_pred cCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH----CCCC
Confidence 11 1 2444443221110 111111123345666677763 4567889999999999999998864 7889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.+...+.++|+++.++.++|+|||+...+ +.||+++- +++|...
T Consensus 177 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i~ 234 (260)
T PRK10744 177 VLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAF--MYLGELI 234 (260)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999999999987677899999999876 57999988 6688653
No 165
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.3e-28 Score=217.05 Aligned_cols=182 Identities=17% Similarity=0.143 Sum_probs=128.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH----HHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE----AWLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~~~v~~ 127 (264)
..++++||++++||+++ ||||||+++++++ ++.|.+.+.+.+ +...+.. .++. .+|....
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~---~~~~~i~~v~q~~~~ 89 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP-----ITKENIR---EVRKFVGLVFQNPDD 89 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-----CCcCCHH---HHHhheEEEecCccc
Confidence 46678999999999997 9999999999775 446666666542 2221111 1111 1122110
Q ss_pred -hh-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 -DF-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 -~f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.+ .++.+++..+.. ..............++..+++.+..++.+.+||||||||++|||+++ .+|+++||||||
T Consensus 90 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~----~~p~llilDEPt 165 (277)
T PRK13652 90 QIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA----MEPQVLVLDEPT 165 (277)
T ss_pred ccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCc
Confidence 11 244444321111 01111112234567777889988889999999999999999998864 688999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||+.++..+.++|+++.+ +.++|++||+...+ +.||+++- |.+|...
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~--l~~G~i~ 217 (277)
T PRK13652 166 AGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYV--MDKGRIV 217 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE--EECCeEE
Confidence 99999999999999998864 68899999998876 68999988 6688653
No 166
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.6e-28 Score=239.07 Aligned_cols=176 Identities=22% Similarity=0.168 Sum_probs=127.5
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
+.+++||+|++||+++ ||||||+++++++ ++.|.+.+.+.+ +..++......++ ..+++|
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~-----i~~~~~~~~~~~~-------~~i~~v 406 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR-----IDTLSPGKLQALR-------RDIQFI 406 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE-----CCcCCHHHHHHhc-------CCeEEE
Confidence 5678999999999998 9999999999776 356677666642 3333322212222 223333
Q ss_pred HHh----hcCCCcC-----------CC-CCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 133 FSL----LLPGSQA-----------KL-SPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 133 f~~----L~~g~~~-----------~l-~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
||. +++..+. .. ........+..++..+|+. ...++++.+|||||||||+|||+++ .+|
T Consensus 407 ~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~----~~p 482 (623)
T PRK10261 407 FQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA----LNP 482 (623)
T ss_pred ecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh----cCC
Confidence 332 2222111 00 0111123456778889996 5788999999999999999998864 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+++||||||++||+.++..+.++|+++.+ +.++|+||||...+ ..||+++- |.+|..
T Consensus 483 ~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~v--l~~G~i 542 (623)
T PRK10261 483 KVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV--MYLGQI 542 (623)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999999864 67899999998876 57999988 678864
No 167
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-28 Score=221.09 Aligned_cols=197 Identities=19% Similarity=0.164 Sum_probs=131.8
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh-------ccchhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA-------MTKKSI 95 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-------~~~~~~ 95 (264)
+.+++++.++|.. +.+++++||++++||+++ ||||||+++++++ +..|.+
T Consensus 21 ~l~~~~l~~~~~~-----------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 83 (268)
T PRK14248 21 ILEVKDLSIYYGE-----------------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83 (268)
T ss_pred eEEEEEEEEEeCC-----------------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE
Confidence 4567788887861 346778999999999997 9999999999775 245666
Q ss_pred HHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---h-hhHHHhhcCCCc-CCCCCCc-hhhHHHhHHHHcCCC----cc
Q psy17516 96 VESDRAKLLKVIEELDEKKKIALREAWLKVNTD---F-GSIFSLLLPGSQ-AKLSPPA-GKDILDGLEVNVAFG----GL 165 (264)
Q Consensus 96 ~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f-~~vf~~L~~g~~-~~l~~~~-~~~~~~~l~~~v~l~----~~ 165 (264)
.+.+.. +...+. ....++.....+.++ | .++++++..+.. ....... .++....++..+++. +.
T Consensus 84 ~~~g~~-----i~~~~~-~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 84 LYEGLN-----ILDSNI-NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred EECCEE-----cccccc-cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHH
Confidence 666542 221110 011112111111111 1 244444322110 0000111 112334445556663 44
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccce
Q psy17516 166 WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVI 244 (264)
Q Consensus 166 ~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l 244 (264)
.++++.+|||||+||++|||+++ .+|+++||||||++||+.++..+.++|+++.++.++|++||+...+ +.||++
T Consensus 158 ~~~~~~~LSgGq~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 158 LHSSALSLSGGQQQRLCIARTLA----MKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred HhcCcccCCHHHHHHHHHHHHHh----CCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEE
Confidence 67889999999999999998864 6889999999999999999999999999987678899999998855 689999
Q ss_pred eEEEeeCCeE
Q psy17516 245 FRTKFVDGNS 254 (264)
Q Consensus 245 ~~v~~~~g~s 254 (264)
+- |++|..
T Consensus 234 ~~--l~~G~i 241 (268)
T PRK14248 234 AF--FLNGDL 241 (268)
T ss_pred EE--EECCEE
Confidence 88 668764
No 168
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=1.3e-27 Score=209.60 Aligned_cols=180 Identities=21% Similarity=0.204 Sum_probs=121.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH----HHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE----AWLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~~~v~~ 127 (264)
.+++++||++++||+++ ||||||+++++++ +..|++.+.+.. +...+... ..+. .++....
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~--~~~~~i~~~~q~~~~ 86 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGED-----ITKLPPHE--RARAGIAYVPQGREI 86 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE-----CCCCCHHH--HHHhCeEEeccCCcc
Confidence 46778999999999998 9999999999776 345666665532 32222211 1111 1111110
Q ss_pred hhh-hHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-CCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 128 DFG-SIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 128 ~f~-~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
... ++.+++..+... ...........++..++ +.+..++++.+|||||+||++|||+++ .+|+++||||||+
T Consensus 87 ~~~~tv~~~l~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~illlDEPt~ 160 (230)
T TIGR03410 87 FPRLTVEENLLTGLAA--LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV----TRPKLLLLDEPTE 160 (230)
T ss_pred cCCCcHHHHHHHHHHh--cCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcc
Confidence 001 233322111000 00111122344444554 456678899999999999999998864 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
+||+.++..+.++|.++.+ +.++|+|||+...+. .||+++- +.+|..
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~--l~~g~i 210 (230)
T TIGR03410 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYV--MERGRV 210 (230)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999998764 678999999998775 6999988 567754
No 169
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-28 Score=218.21 Aligned_cols=184 Identities=16% Similarity=0.096 Sum_probs=124.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++||+++ ||||||+++++++. ..|++.+.+.. +...+ .....++.....+.
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~-----~~~~~-~~~~~~~~~i~~~~ 91 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN-----IYGSK-MDLVELRKEVGMVF 91 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEE-----ccccc-chHHHhhccEEEEe
Confidence 46778999999999997 99999999998763 35666666542 21111 01111121111111
Q ss_pred hh---h-hhHHHhhcCCCcC-CCCCCc-hhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQA-KLSPPA-GKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~~-~l~~~~-~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++ | .++++++..+... .....+ ....+..++..+++. ...++++.+|||||+||++|||+++ .+|+
T Consensus 92 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~----~~p~ 167 (251)
T PRK14251 92 QQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA----VRPK 167 (251)
T ss_pred cCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh----cCCC
Confidence 11 1 2444444322110 111111 112345556667773 4457889999999999999998864 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.+...+.++|+++.++.++|+|||+...+ +.||+++- |++|...
T Consensus 168 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~--l~~G~i~ 225 (251)
T PRK14251 168 VVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAF--LMNGDLI 225 (251)
T ss_pred EEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEE--EECCEEE
Confidence 999999999999999999999999987678999999999875 67999987 6788653
No 170
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.94 E-value=1.6e-27 Score=210.07 Aligned_cols=180 Identities=20% Similarity=0.204 Sum_probs=121.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++||+++ ||||||+++++++ +..|.+.+.+.. +...+.. .++.....+.++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~---~~~~~i~~~~q~~~~ 87 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD-----LALADPA---WLRRQVGVVLQENVL 87 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCee-----hHhcCHH---HHhhcEEEEcCCchh
Confidence 46678999999999998 9999999999775 345666666542 3322211 122111111111
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhH-----HHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDI-----LDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~-----~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
| .++.+++..+... ......... +..+...+ ++....++++.+|||||||||+|||+++ .+|+++||
T Consensus 88 ~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~----~~p~llll 162 (237)
T cd03252 88 FNRSIRDNIALADPG-MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI----HNPRILIF 162 (237)
T ss_pred ccchHHHHhhccCCC-CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh----hCCCEEEE
Confidence 1 2344443322111 000000000 11222222 4455567789999999999999998864 68899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++|++++++.++|++||+...+..||+++- +.+|..
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~--l~~G~i 214 (237)
T cd03252 163 DEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIV--MEKGRI 214 (237)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999998777889999999999888999988 668764
No 171
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=6.9e-28 Score=217.78 Aligned_cols=188 Identities=21% Similarity=0.207 Sum_probs=128.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--c--------chhHHHhhHHHHHHHHHhhhHHHHHHHH-HHH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--T--------KKSIVESDRAKLLKVIEELDEKKKIALR-EAW 122 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~--------~~~~~~~~~~~l~~~I~~l~~~~~~~~~-~~~ 122 (264)
.+++++||+|++|++++ ||||||+++++++. . .|++.+.+.. +...+........ -.+
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~v~ 89 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP-----LAAIDAPRLARLRAVLP 89 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEE-----cccCCHHHHHhhcEEec
Confidence 46678999999999997 99999999997753 2 4556665532 3222221111110 012
Q ss_pred HHhhhhh-hhHHHhhcCCCcCC-----CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHh-----h
Q psy17516 123 LKVNTDF-GSIFSLLLPGSQAK-----LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAML-----L 191 (264)
Q Consensus 123 ~~v~~~f-~~vf~~L~~g~~~~-----l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~-----l 191 (264)
|.....+ .++++++..+.... .......+....++..+++....++++.+|||||+|||+||++++.. -
T Consensus 90 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~ 169 (272)
T PRK13547 90 QAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDA 169 (272)
T ss_pred ccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcccccccc
Confidence 2211112 24566543321110 00111123456677788998888899999999999999999887410 0
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
..+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- +.+|..
T Consensus 170 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~--l~~G~i 233 (272)
T PRK13547 170 AQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM--LADGAI 233 (272)
T ss_pred CCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE--EECCeE
Confidence 037899999999999999999999999998764 57899999998876 57999998 668764
No 172
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.5e-27 Score=215.55 Aligned_cols=184 Identities=22% Similarity=0.230 Sum_probs=127.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
.+.+++||+|++||+++ ||||||+++++++ +..|.+.+.+.. +.. .......++.. +|....
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~-----~~~-~~~~~~~~~~~i~~v~q~~~~ 89 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP-----IKY-DKKSLLEVRKTVGIVFQNPDD 89 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE-----Ccc-ccchHHHHHhheEEEeeChhh
Confidence 35678999999999998 9999999999775 345666666542 210 00001111111 122110
Q ss_pred h-h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 D-F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 ~-f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
. | .++.+++..+.. .........+.+..++..+++.+..++++.+|||||+||++|||+++ .+|++++|||||
T Consensus 90 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~----~~p~llllDEPt 165 (275)
T PRK13639 90 QLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA----MKPEIIVLDEPT 165 (275)
T ss_pred hhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCC
Confidence 0 1 134444321110 01111111234566777889998899999999999999999998864 688999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||+.++..+.++|+++.+ +.++|+|||+.... ..||+++- |.+|...
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~--l~~G~i~ 216 (275)
T PRK13639 166 SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYV--MSDGKII 216 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999864 67899999998876 57999988 6688654
No 173
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.4e-28 Score=215.26 Aligned_cols=183 Identities=18% Similarity=0.136 Sum_probs=123.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++||+++ ||||||+++++++. ..|++.+.+.. +..... ....++.....+.
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~-----i~~~~~-~~~~~~~~i~~v~ 99 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED-----IYEPDV-DVVELRKNVGMVF 99 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE-----cccccc-hHHHHhhhEEEEe
Confidence 46778999999999997 99999999998753 36666665532 221110 0111221111111
Q ss_pred hh---h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 127 TD---F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
+. | .++++++..+.. ...........+..++..+++. +..++++.+|||||+||++|||+++ .+|++
T Consensus 100 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~----~~p~l 175 (258)
T PRK14268 100 QKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA----VKPKI 175 (258)
T ss_pred cCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH----cCCCE
Confidence 11 1 233333321110 0111111112345566677763 4567889999999999999998864 68899
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- |.+|..
T Consensus 176 lllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~--l~~G~i 231 (258)
T PRK14268 176 ILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGF--FLMGEL 231 (258)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999987678999999998876 67999988 668865
No 174
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-28 Score=219.48 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=120.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHH----HH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALRE----AW 122 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~ 122 (264)
.+++++||++++||+++ ||||||+++++++. ++|.+.+.+.. +..... ....++. .+
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~-----~~~~~~-~~~~~~~~i~~~~ 91 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGED-----LYGPGV-DPVAVRRTIGMVF 91 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEe-----cccccc-ChHHHhcceEEEc
Confidence 35678999999999997 99999999998763 36666666532 211100 0011121 11
Q ss_pred HHhhhhh-hhHHHhhcCCCcC-CC-CCCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 123 LKVNTDF-GSIFSLLLPGSQA-KL-SPPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 123 ~~v~~~f-~~vf~~L~~g~~~-~l-~~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+...... .++++++..+... .. ......+.+..++..+++. +..++++.+||||||||++|||++ +.+|
T Consensus 92 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral----~~~p 167 (258)
T PRK14241 92 QRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI----AVEP 167 (258)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH----hcCC
Confidence 1111000 1344433211100 00 1111123445666677773 456788999999999999999886 4788
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v 247 (264)
+++||||||++||+.++..+.++|++++++.++|+|||+...+ +.||+++-+
T Consensus 168 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 168 DVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999987678999999998875 689999884
No 175
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2e-27 Score=211.25 Aligned_cols=183 Identities=20% Similarity=0.142 Sum_probs=124.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----c---cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----M---TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~---~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++||+++ ||||||+++++++ + ..|++.+.+.. +..... ....++.....+.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~-----~~~~~~-~~~~~~~~i~~v~ 90 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRN-----IYDKGV-QVDELRKNVGMVF 90 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEe-----cccccc-cHHHHhhheEEEe
Confidence 46778999999999997 9999999999764 2 25666666642 221110 0111221111111
Q ss_pred hh---h-hhHHHhhcCCCc-CCCCCC-chhhHHHhHHHHcCCCc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQ-AKLSPP-AGKDILDGLEVNVAFGG----LWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~-~~l~~~-~~~~~~~~l~~~v~l~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+. | .++++++..+.. ...... ........++..+++.+ ..++++.+||||||||++|||+++ .+|+
T Consensus 91 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~----~~p~ 166 (250)
T PRK14245 91 QRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA----VSPS 166 (250)
T ss_pred cCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh----cCCC
Confidence 11 1 244444322110 001011 11223456666778753 467889999999999999998864 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- +.+|..
T Consensus 167 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~--l~~G~~ 223 (250)
T PRK14245 167 VLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAF--FYMGEM 223 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEE--EECCEE
Confidence 999999999999999999999999987678899999998876 67999998 668765
No 176
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=2e-27 Score=234.95 Aligned_cols=178 Identities=22% Similarity=0.258 Sum_probs=128.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+.+++++||++++|+.++ ||||||++++.++ |++|.+.+++.+ +..++. ..+++....++|+
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~-----i~~~~~---~~l~~~i~~v~Q~~~ 425 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRP-----LSSLSH---SVLRQGVAMVQQDPV 425 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEE-----hhhCCH---HHHHhheEEEccCCc
Confidence 346789999999999997 9999999999765 445677777653 555553 2344333233333
Q ss_pred -h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-------c----ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 -F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-------G----LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 -f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-------~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| +++.+++..+..+ + ++.+..++..+|+. + ........||||||||++|||++ +++|
T Consensus 426 lF~~Ti~~NI~~~~~~-----~-d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL----l~~~ 495 (592)
T PRK10790 426 VLADTFLANVTLGRDI-----S-EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL----VQTP 495 (592)
T ss_pred cccchHHHHHHhCCCC-----C-HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH----HhCC
Confidence 2 3555666554321 1 11223333344432 2 22234567999999999999886 5799
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNV 256 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~i 256 (264)
|+++|||||++||+.+...+.+.|+++.++.|+|+||||...+..||+++- |++|...-
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~--l~~G~i~~ 554 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILV--LHRGQAVE 554 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE--EECCEEEE
Confidence 999999999999999999999999998778899999999999999999988 77887643
No 177
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.94 E-value=2.5e-27 Score=210.95 Aligned_cols=187 Identities=18% Similarity=0.200 Sum_probs=125.9
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc-cchhHHHhhHHHHHHHHHhhhHHHHHH-HHHHHHHhhhhh-hh
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM-TKKSIVESDRAKLLKVIEELDEKKKIA-LREAWLKVNTDF-GS 131 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-~~~~~~~~~~~~l~~~I~~l~~~~~~~-~~~~~~~v~~~f-~~ 131 (264)
.++++||++++|++++ ||||||+++++++. ..|++.+.+.. +...+...... ....+|.....+ .+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~-----i~~~~~~~~~~~i~~v~q~~~~~~~~t 85 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQP-----LEAWSAAELARHRAYLSQQQTPPFAMP 85 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEe-----cCcCCHHHHhhheEEecccCccCCCcc
Confidence 3567999999999997 99999999997753 45566665532 32222111111 000112111111 24
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHh-h-cC-CCCEEEeecCCCCCC
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAML-L-FK-PAPLYILDEVDAALD 208 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~-l-~~-~~~illlDEPta~LD 208 (264)
+++++..+................++..+++.+..++++..||||||||++||++++.. . .+ +|+++||||||++||
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD 165 (248)
T PRK03695 86 VFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 165 (248)
T ss_pred HHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCC
Confidence 55544322111111111123456677788998888999999999999999999887410 0 01 469999999999999
Q ss_pred HHHHHHHHHHHHHhhc-CCeEEEEEeCcc-hHhhccceeEEEeeCCeE
Q psy17516 209 LSHTQNIGQMLKRHFK-TSQFIIVSLKEG-MFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 209 ~~~~~~i~~ll~~~~~-~~q~IiVTH~~~-~~~~ad~l~~v~~~~g~s 254 (264)
+.++..+.++|+++.+ +.++|+|||+.. ....||+++- |++|..
T Consensus 166 ~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~--l~~G~i 211 (248)
T PRK03695 166 VAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWL--LKQGKL 211 (248)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999998864 678999999987 4578999987 668865
No 178
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=4e-28 Score=216.34 Aligned_cols=172 Identities=24% Similarity=0.215 Sum_probs=130.0
Q ss_pred HHHHHHHHhhcccccc-cccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhh
Q psy17516 29 QLSLRNEENQFKVGAM-VKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESD 99 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~ 99 (264)
+++++++.+.|..+.. +... .-...++|||+|++||+++ ||||||-+++.++ ++.|++++.+
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~---------~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g 74 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKR---------YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG 74 (268)
T ss_pred eEEEeccEEEEecccccCccc---------ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC
Confidence 4556677777775432 1000 0123345999999999998 9999999988665 4577777777
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHH
Q psy17516 100 RAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQR 178 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGek 178 (264)
++ |..++ .....+.+..++..||++. ...++|++|||||+
T Consensus 75 ~~-----i~~~~----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 75 KD-----ITKLS----------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred cc-----hhhcc----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 53 33332 1112234566777888864 77899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 179 SLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 179 qrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
||++||||+| -+|+++++|||+|+||...+..+.++++++.+ +.+.++||||..+.. .||++.- |..|..
T Consensus 116 QRi~IARALa----l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~V--My~G~i 188 (268)
T COG4608 116 QRIGIARALA----LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAV--MYLGKI 188 (268)
T ss_pred hhHHHHHHHh----hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEE--EecCce
Confidence 9999999986 47799999999999999999999999999875 789999999999885 5898866 555543
No 179
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.3e-28 Score=218.57 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc-------cch
Q psy17516 27 KAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKK 93 (264)
Q Consensus 27 ~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~ 93 (264)
+++.+++++.+.|.. +.+++++||+|++||+++ ||||||+++++++. ..|
T Consensus 10 ~~~l~i~~l~~~~~~-----------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G 72 (259)
T PRK14274 10 QEVYQINGMNLWYGQ-----------------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTG 72 (259)
T ss_pred CceEEEeeEEEEECC-----------------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce
Confidence 345677788888861 346678999999999997 99999999997753 246
Q ss_pred hHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhhhhhhHHHhhcCCCcC-CCCC-CchhhHHHhHHHHcCCC----
Q psy17516 94 SIVESDRAKLLKVIEELDEKKKIALREA----WLKVNTDFGSIFSLLLPGSQA-KLSP-PAGKDILDGLEVNVAFG---- 163 (264)
Q Consensus 94 ~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~~f~~vf~~L~~g~~~-~l~~-~~~~~~~~~l~~~v~l~---- 163 (264)
.+.+.+.. +...+ .....++.. +|.......++++++..+... .... ......+..++..+++.
T Consensus 73 ~i~~~g~~-----~~~~~-~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 146 (259)
T PRK14274 73 EMNYNGSN-----ILKGK-VDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK 146 (259)
T ss_pred EEEECCEE-----ccccc-cCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh
Confidence 66665542 21100 001111211 121111112455544221110 0001 11112344555566764
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhcc
Q psy17516 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNAN 242 (264)
Q Consensus 164 ~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad 242 (264)
+..++++.+|||||+||++|||+++ .+|+++|+||||++||+.++..+.++|+++.++.++|+|||+...+ +.||
T Consensus 147 ~~l~~~~~~LS~Gq~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d 222 (259)
T PRK14274 147 DRLHTQALSLSGGQQQRLCIARALA----TNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSD 222 (259)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCC
Confidence 3457889999999999999998864 7889999999999999999999999999987778999999998875 6799
Q ss_pred ceeEEEeeCCeE
Q psy17516 243 VIFRTKFVDGNS 254 (264)
Q Consensus 243 ~l~~v~~~~g~s 254 (264)
+++- |.+|..
T Consensus 223 ~i~~--l~~G~i 232 (259)
T PRK14274 223 QTAF--FYMGEL 232 (259)
T ss_pred EEEE--EECCEE
Confidence 9988 667765
No 180
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-27 Score=215.08 Aligned_cols=183 Identities=17% Similarity=0.120 Sum_probs=126.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++|++++ ||||||+++++++. ..|.+.+.+.. +...+. ....++.....+.
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~-----i~~~~~-~~~~~~~~i~~v~ 106 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED-----IYDPRL-DVVELRARVGMVF 106 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE-----Cccccc-chHHHhhceEEEe
Confidence 46678999999999997 99999999997753 45666666542 221110 0111221111111
Q ss_pred hh---h-hhHHHhhcCCCc-CCC--CCCchhhHHHhHHHHcCCCc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQ-AKL--SPPAGKDILDGLEVNVAFGG----LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~-~~l--~~~~~~~~~~~l~~~v~l~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+. | .++++++..+.. ... ........+..++..+++.. ..++++.+||||||||++|||+++ .+|
T Consensus 107 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~----~~p 182 (267)
T PRK14235 107 QKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA----VSP 182 (267)
T ss_pred cCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH----cCC
Confidence 11 1 245554432111 011 01111233456677778853 457889999999999999998864 789
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+++||||||++||+.++..+.++|++++++.++|+|||+...+ ..||+++- +++|..
T Consensus 183 ~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~--l~~G~i 240 (267)
T PRK14235 183 EVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAF--FHLGNL 240 (267)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEE--EECCEE
Confidence 9999999999999999999999999987677899999998877 67999988 568765
No 181
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.94 E-value=1.4e-27 Score=209.41 Aligned_cols=182 Identities=20% Similarity=0.256 Sum_probs=126.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+.+++||++++||+++ ||||||+++++++ +..|++.+.+.. +...+... ++.....+.+.
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~---~~~~i~~~~q~~~l 92 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGED-----ISTLKPEI---YRQQVSYCAQTPTL 92 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE-----cCcCCHHH---HHhccEEEeccccc
Confidence 46678999999999997 9999999999775 346666665532 32222211 11111111111
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
| .++++++..+.... ...........++..+++. ...++++.+|||||+||++|||+++ .+|+++||||||++
T Consensus 93 ~~~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~ 167 (225)
T PRK10247 93 FGDTVYDNLIFPWQIR-NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ----FMPKVLLLDEITSA 167 (225)
T ss_pred ccccHHHHHHhHHhhc-CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccc
Confidence 1 14444432111000 0111123455677788986 4678999999999999999998864 78999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 207 LDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||+.++..+.++|+++.+ +.++|+|||+...++.||+++.+....|..
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 168 LDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEM 217 (225)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchH
Confidence 999999999999998753 678999999999888999999865444543
No 182
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.94 E-value=2e-27 Score=238.85 Aligned_cols=175 Identities=22% Similarity=0.251 Sum_probs=126.6
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+..++++||++++||.++ ||||||+++++++ |++|.+.++|.+ +.+++. ..+|+.+..+.|+
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~-----i~~~~~---~~lr~~i~~v~Q~~~ 537 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD-----LAGLDV---QAVRRQLGVVLQNGR 537 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE-----cCcCCH---HHHHhccEEEccCCc
Confidence 457889999999999998 9999999999765 456778777753 666653 3345433333332
Q ss_pred -h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-------cc----ccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 -F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-------LW----KESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 -f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-------~~----~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| +++.+++..+.. ... +....++..+++.+ .. ......||||||||++||||+ +++|
T Consensus 538 lf~gTI~eNi~~~~~-----~~~-e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl----l~~p 607 (686)
T TIGR03797 538 LMSGSIFENIAGGAP-----LTL-DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL----VRKP 607 (686)
T ss_pred cCcccHHHHHhcCCC-----CCH-HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH----hcCC
Confidence 1 455666554422 111 11222233334332 12 234568999999999999875 5899
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|+++||||||+||+.+...+.+.|+++ +.|+|+||||..+++.||+++- |++|...
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iiv--l~~G~iv 663 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYV--LDAGRVV 663 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEE--EECCEEE
Confidence 999999999999999999999999886 4689999999999999999998 7788653
No 183
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.94 E-value=1.2e-27 Score=210.35 Aligned_cols=181 Identities=16% Similarity=0.168 Sum_probs=121.7
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhhc------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEAM------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+++||++++|++++ ||||||+++++++. ..|.+.+.+.. +...+. .+..+--.+|.....|
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~-----~~~~~~-~~~~i~~~~q~~~~~~ 75 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRP-----LLPLSI-RGRHIATIMQNPRTAF 75 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEe-----chhhhh-hhheeEEEecCchhhc
Confidence 468999999999997 99999999997763 35666666542 222110 0000000011110001
Q ss_pred ---hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC---cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 130 ---GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG---GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 130 ---~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~---~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
-++++.+..+.. .........+.+..++..+++. +..++++.+|||||||||+|||+++ .+|+++||||
T Consensus 76 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~----~~p~vllLDE 151 (230)
T TIGR02770 76 NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALL----LEPPFLIADE 151 (230)
T ss_pred CcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHh----cCCCEEEEcC
Confidence 012222110000 0000111123456677788887 4678899999999999999998864 6889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||++||+.+...+.++|+++.+ +.++|++||+...+ ..||+++- |.+|..
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i 204 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAV--MDDGRI 204 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999998764 67899999998877 57999988 668764
No 184
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.1e-28 Score=216.59 Aligned_cols=185 Identities=21% Similarity=0.132 Sum_probs=121.7
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKV 125 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v 125 (264)
+.+++++||++++||+++ ||||||+++++++. +.|++.+.+.. +...+. ....++.....+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~-----~~~~~~-~~~~~~~~i~~~ 91 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN-----IYAPNE-DVVQLRKQVGMV 91 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE-----cccccc-cHHHhcCeEEEE
Confidence 346778999999999998 99999999998752 25666665532 211110 011111111011
Q ss_pred hhhh----hhHHHhhcCCCc-CCCCCCch-hhHHHhHHHHcCC----CcccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 126 NTDF----GSIFSLLLPGSQ-AKLSPPAG-KDILDGLEVNVAF----GGLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 126 ~~~f----~~vf~~L~~g~~-~~l~~~~~-~~~~~~l~~~v~l----~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
.++. .++++++..+.. ......+. .......+..+++ .+..++++.+|||||+||++|||+++ .+|
T Consensus 92 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~----~~p 167 (252)
T PRK14255 92 FQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA----VKP 167 (252)
T ss_pred ECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh----cCC
Confidence 1111 133333221100 00011111 1223334445554 34567889999999999999998864 788
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
+++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- |.+|...
T Consensus 168 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~--l~~G~i~ 226 (252)
T PRK14255 168 DVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAF--FLTGNLI 226 (252)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999999999987678899999999876 67999988 6687653
No 185
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.94 E-value=8.1e-28 Score=212.50 Aligned_cols=180 Identities=19% Similarity=0.137 Sum_probs=123.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREA----WLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~ 127 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+.+.. +.... ..++.. +++-+.
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~-----~~~~~----~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV-----PWKRR----KKFLRRIGVVFGQKTQ 105 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE-----ccccc----hhhcccEEEEcCCccc
Confidence 46788999999999997 9999999999875 446666665532 11100 111110 100000
Q ss_pred hh--hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 128 DF--GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 128 ~f--~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
-+ .++.+.+..... .........+....++..+++.+..++++.+|||||+||++||++++ .+|+++||||||
T Consensus 106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt 181 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALL----HEPEILFLDEPT 181 (236)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 01 123332211000 00111111234456677789988888999999999999999998864 788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- +.+|..
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~--l~~G~i 232 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLV--IDKGRL 232 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEE--EeCCEE
Confidence 99999999999999998864 57899999999875 67999988 567754
No 186
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.7e-27 Score=209.57 Aligned_cols=179 Identities=21% Similarity=0.200 Sum_probs=124.7
Q ss_pred ccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-hhHHH
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-GSIFS 134 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~~vf~ 134 (264)
++||++++|++++ ||||||+++++++. ..|.+.+.+.. +...... ...+--.++...... .++++
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~-~~~i~~~~q~~~~~~~~tv~e 90 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD-----HTTTPPS-RRPVSMLFQENNLFSHLTVAQ 90 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCee-----cCcCChh-hccEEEEecccccccCCcHHH
Confidence 6999999999998 99999999997753 35666666542 3222211 111100112211101 14455
Q ss_pred hhcCCCcCCCCCC-chhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHH
Q psy17516 135 LLLPGSQAKLSPP-AGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213 (264)
Q Consensus 135 ~L~~g~~~~l~~~-~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~ 213 (264)
++..+........ .....+..++..+|+.+..++++.+|||||+||++|||+++ .+|+++||||||++||+.++.
T Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 91 NIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLV----REQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred HHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHH
Confidence 4432211111111 11234566777889988889999999999999999998864 688999999999999999999
Q ss_pred HHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 214 NIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 214 ~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.+.++|+++.+ +.++|+|||+...+ +.||+++- +.+|..
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~g~i 208 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLV--VADGRI 208 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE--EECCEE
Confidence 99999998753 67999999999975 67999988 567765
No 187
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.6e-28 Score=214.47 Aligned_cols=183 Identities=19% Similarity=0.163 Sum_probs=125.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+.+++||+|++||+++ ||||||+++++++. ..|++.+.+.. +...+.. ...++.....+.
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~-----i~~~~~~-~~~~~~~i~~v~ 92 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID-----VYSVDTN-VVLLRAKVGMVF 92 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe-----hHhcccc-hHHHhhhEEEEe
Confidence 46678999999999997 99999999998763 36666666642 3222111 111221111111
Q ss_pred hh---h-hhHHHhhcCCCcC-CCCCC--chhhHHHhHHHHcCCCc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQA-KLSPP--AGKDILDGLEVNVAFGG----LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~~-~l~~~--~~~~~~~~l~~~v~l~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
++ | .++++++..+... ..... ........++..+++.+ ..++.+.+||||||||++|||+++ .+|
T Consensus 93 q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~----~~p 168 (251)
T PRK14244 93 QKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA----VKP 168 (251)
T ss_pred cCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh----cCC
Confidence 11 1 2344433211100 00001 11223456667788854 456789999999999999998864 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+++||||||++||+.+...+.++|+++.++.++|+|||+...+ +.||+++- +++|..
T Consensus 169 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~--l~~G~i 226 (251)
T PRK14244 169 TMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAF--FQSGRI 226 (251)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEE--EECCEE
Confidence 9999999999999999999999999887678999999999876 57999988 668864
No 188
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.94 E-value=3.2e-27 Score=237.62 Aligned_cols=178 Identities=22% Similarity=0.250 Sum_probs=128.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+..++++||++++|+.++ ||||||+++++++ +++|.+.+++.+ +.+++. ..+|+....|.|+.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~-----l~~~~~---~~lr~~i~~v~Q~~~ 549 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD-----IRQIDP---ADLRRNIGYVPQDPR 549 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-----hhhCCH---HHHHhccEEECCChh
Confidence 356789999999999998 9999999999765 456777777753 555553 33454333333332
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC-------C----cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF-------G----GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l-------~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+++.+++..+... .. ++.+...+..+++ | .........||||||||++|||++ +++|
T Consensus 550 lf~~TI~eNi~~~~~~----~~-~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal----l~~p 620 (694)
T TIGR03375 550 LFYGTLRDNIALGAPY----AD-DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL----LRDP 620 (694)
T ss_pred hhhhhHHHHHhCCCCC----CC-HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH----hcCC
Confidence 4566666544221 11 1112222223332 2 222344568999999999999886 5899
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
++++||||||+||+.+...+.+.|.++.++.|+|+||||..++..||+++- |++|...
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iiv--l~~G~i~ 678 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIV--MDNGRIV 678 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE--EeCCEEE
Confidence 999999999999999999999999998888999999999999999999998 7788753
No 189
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1e-27 Score=232.51 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=127.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH----HHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE----AWLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~----~~~~v~~ 127 (264)
.+++++||+|++||+++ ||||||+++++++ +.+|.+.+.+.. +...+.. ..++. .+|....
T Consensus 12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~--~~~~~~i~~v~q~~~~ 84 (491)
T PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE-----IDFKSSK--EALENGISMVHQELNL 84 (491)
T ss_pred EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEE-----CCCCCHH--HHHhCCEEEEeccccc
Confidence 46678999999999997 9999999999776 346666666642 3222211 11111 1121111
Q ss_pred hh-hhHHHhhcCCCcC--CC--CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 128 DF-GSIFSLLLPGSQA--KL--SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 128 ~f-~~vf~~L~~g~~~--~l--~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
.. -++++++..+... .. ......+.+..++..+++.+..++++.+|||||||||+||++++ .+|+++||||
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~----~~p~lllLDE 160 (491)
T PRK10982 85 VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS----YNAKIVIMDE 160 (491)
T ss_pred ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH----hCCCEEEEeC
Confidence 11 1445544322110 00 00111234566777889988889999999999999999998875 6889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++- |.+|..
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~--l~~G~i 212 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITI--LRDGQW 212 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999864 67899999998866 57999988 668864
No 190
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.2e-28 Score=235.14 Aligned_cols=182 Identities=18% Similarity=0.122 Sum_probs=127.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||++++|++++ ||||||+++++++ +..|.+.+.+.. +...+. ...++.....+.++.
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~-----i~~~~~--~~~~~~~i~~v~q~~~~ 90 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE-----MRFAST--TAALAAGVAIIYQELHL 90 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE-----CCCCCH--HHHHhCCEEEEEechhc
Confidence 35678999999999997 9999999999776 346666665532 222111 111221111111111
Q ss_pred ---hhHHHhhcCCCcCC----CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 130 ---GSIFSLLLPGSQAK----LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~----l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
-++++++..+.... .......+.+..++..+++.+..++++.+||||||||++||++++ .+|+++||||
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~----~~p~lllLDE 166 (501)
T PRK11288 91 VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA----RNARVIAFDE 166 (501)
T ss_pred cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH----hCCCEEEEcC
Confidence 13444433221100 001111234566778889988888999999999999999998875 6889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- |++|..
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~--l~~G~i 218 (501)
T PRK11288 167 PTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITV--FKDGRY 218 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999998864 67899999998876 67999988 668864
No 191
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.3e-27 Score=207.42 Aligned_cols=180 Identities=21% Similarity=0.272 Sum_probs=122.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+.+++||++++|++++ ||||||+++++++ +.+|.+.+.+.. +...+.. .+++....+.++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~---~~~~~i~~~~q~~~~ 87 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD-----VRDYTLA---SLRRQIGLVSQDVFL 87 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEE-----hhhCCHH---HHHhhEEEeCCCCee
Confidence 45678999999999997 9999999999775 446666666542 3222211 122111111111
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhh-----HHHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKD-----ILDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~-----~~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
| .++++++..+... ........ .+..+...+ ++....++++.+||||||||++||++++ .+|+++||
T Consensus 88 ~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~lllL 162 (234)
T cd03251 88 FNDTVAENIAYGRPG-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL----KDPPILIL 162 (234)
T ss_pred ccccHHHHhhccCCC-CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 1 2344443222111 00000001 012222233 4555667889999999999999998864 78899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++|+++.++.++|+|||+...+..||+++- +.+|..
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~--l~~G~i 214 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVV--LEDGKI 214 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEE--ecCCeE
Confidence 9999999999999999999998777899999999998888999988 668754
No 192
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3e-28 Score=216.72 Aligned_cols=183 Identities=18% Similarity=0.148 Sum_probs=124.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||++++||+++ ||||||+++++++. ..|.+.+.+.. +..... ....++.....+.
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~-----i~~~~~-~~~~~~~~i~~~~ 91 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN-----IYDKDV-DVVELRKRVGMVF 91 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe-----cccccc-cHHHHHhheEEEe
Confidence 46678999999999997 99999999998763 35666665542 221110 0011111111111
Q ss_pred hh---h-hhHHHhhcCCCcC-CCC-CCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQA-KLS-PPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~~-~l~-~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+. | .++++++..+... ... ..........++..+++. +..++++.+||||||||++|||+++ .+|+
T Consensus 92 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~----~~p~ 167 (251)
T PRK14270 92 QKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA----VKPD 167 (251)
T ss_pred cCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh----cCCC
Confidence 11 1 2444443221110 110 011122344566677763 3567889999999999999998875 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- +.+|..
T Consensus 168 llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~--l~~G~i 224 (251)
T PRK14270 168 VILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAF--FLMGDL 224 (251)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEE--EECCeE
Confidence 999999999999999999999999987678899999998864 67999988 568765
No 193
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.2e-28 Score=214.37 Aligned_cols=185 Identities=20% Similarity=0.149 Sum_probs=123.4
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKV 125 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v 125 (264)
+.+++++||++++||+++ ||||||+++++++. ..|.+.+++.. +...+ .....++.....+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~-----~~~~~-~~~~~~~~~i~~~ 89 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQD-----IYDPQ-LDVTEYRKKVGMV 89 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE-----cccch-hhHHHhhhhEEEE
Confidence 346778999999999997 99999999998753 45666666532 22111 0111111111111
Q ss_pred hhh---h-hhHHHhhcCCCcC-CCCCC-chhhHHHhHHHHcCCCc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 126 NTD---F-GSIFSLLLPGSQA-KLSPP-AGKDILDGLEVNVAFGG----LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 126 ~~~---f-~~vf~~L~~g~~~-~l~~~-~~~~~~~~l~~~v~l~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
.+. | .++++++..+... ..... ..++.+..++..+++.. ..++++.+|||||+||++||++++ .+|
T Consensus 90 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~----~~p 165 (250)
T PRK14262 90 FQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA----VEP 165 (250)
T ss_pred ecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh----CCC
Confidence 111 1 1333333211100 00111 11223445555667643 467889999999999999998864 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcch-HhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM-FSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s~ 255 (264)
+++||||||++||+.+...+.++|++++++.++|+|||+... .+.||+++- +.+|...
T Consensus 166 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~--l~~G~i~ 224 (250)
T PRK14262 166 EVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAF--MYRGELI 224 (250)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999999999998777889999999885 578999988 5687654
No 194
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=3e-27 Score=196.75 Aligned_cols=178 Identities=20% Similarity=0.168 Sum_probs=129.1
Q ss_pred cccccceeeeccceee------chhhHHHHhhh--hhccchhHHHhhHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhhhh
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISM--EAMTKKSIVESDRAKLLKVIEEL-DEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~--~l~~~~~~~~~~~~~l~~~I~~l-~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+.||+|+.+.||.+. +|||||++.+. +.+..|.-.+.+.. -+++.- .++.-..+ +++.|.
T Consensus 17 ~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~---fd~s~~~~~k~i~~l-------r~~vgm 86 (242)
T COG4161 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH---FDFSKTPSDKAIRDL-------RRNVGM 86 (242)
T ss_pred heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccc---cccccCccHHHHHHH-------HHhhhh
Confidence 4458999999999875 89999998763 44555543333321 011111 11222223 466777
Q ss_pred HHHh--hcCCCcC------------CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 132 IFSL--LLPGSQA------------KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 132 vf~~--L~~g~~~------------~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
|||. |.|..+. +++..+....+..++.++.+.++.++.|-.|||||+||||||||+ +..|.+
T Consensus 87 vfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaral----mmkpqv 162 (242)
T COG4161 87 VFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL----MMEPQV 162 (242)
T ss_pred hhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHH----hcCCcE
Confidence 8874 5554432 222223334567788899999999999999999999999999886 457799
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
+++|||||+|||+-...+.++|++++. +.+-+||||.-+.+. .|.+++- |++|..
T Consensus 163 llfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvy--me~g~i 219 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVY--MENGHI 219 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEe--eecCee
Confidence 999999999999999999999999986 667789999988874 5777655 888865
No 195
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.94 E-value=1.8e-27 Score=206.82 Aligned_cols=180 Identities=21% Similarity=0.193 Sum_probs=123.9
Q ss_pred cccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh-hHH
Q psy17516 63 SMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG-SIF 133 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~-~vf 133 (264)
.++||++++|++++ ||||||+++++++ +..|.+.+.+.. +...... +..+--.+|......+ +++
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~-~~~i~~v~q~~~~~~~~t~~ 88 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS-----HTGLAPY-QRPVSMLFQENNLFAHLTVR 88 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-----cccCChh-ccceEEEeccCccCCCCcHH
Confidence 47999999999998 9999999999775 345666665542 2221110 0000001122111111 344
Q ss_pred HhhcCCCcCCCC-CCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHH
Q psy17516 134 SLLLPGSQAKLS-PPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT 212 (264)
Q Consensus 134 ~~L~~g~~~~l~-~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~ 212 (264)
+++..+...... .......+..++..+++.+..++++.+|||||+||++|||+++ .+|+++||||||++||+.++
T Consensus 89 en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~ 164 (213)
T TIGR01277 89 QNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLV----RPNPILLLDEPFSALDPLLR 164 (213)
T ss_pred HHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHH
Confidence 443211100011 1111234556777889988889999999999999999998864 68899999999999999999
Q ss_pred HHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 213 QNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 213 ~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
..+.++|+++.+ +.++|+|||+.... +.||+++- |++|..
T Consensus 165 ~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~--l~~g~i 207 (213)
T TIGR01277 165 EEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAV--VSQGKI 207 (213)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEE--EECCeE
Confidence 999999998763 67899999998875 67999988 568755
No 196
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=5.7e-27 Score=195.89 Aligned_cols=179 Identities=21% Similarity=0.285 Sum_probs=132.3
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
..+++++||.|.+||+++ ||||||+++++.+ ++.|..++.|+. ++.++. +.||....++.+.
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~-----vs~~~p---ea~Rq~VsY~~Q~pa 87 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGED-----VSTLKP---EAYRQQVSYCAQTPA 87 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcc-----ccccCh---HHHHHHHHHHHcCcc
Confidence 467789999999999997 9999999988554 567788888753 555543 4566433223222
Q ss_pred -h-hhHHHh-hcCCCcCCCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 129 -F-GSIFSL-LLPGSQAKLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 129 -f-~~vf~~-L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
| ++|+++ .||..-. -...+ .+....++.++++++ ...+.+.+||||||||+||+|-+ .--|+++||||||
T Consensus 88 Lfg~tVeDNlifP~~~r-~rr~d-r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L----q~~P~ILLLDE~T 161 (223)
T COG4619 88 LFGDTVEDNLIFPWQIR-NRRPD-RAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL----QFMPKILLLDEIT 161 (223)
T ss_pred ccccchhhccccchHHh-ccCCC-hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh----hcCCceEEecCch
Confidence 3 256655 3443211 11112 234556777888876 56889999999999999998876 3456999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCe
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGN 253 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~ 253 (264)
|+||+.|...|-++|.++.. +..+++|||++.- +..||+++.+. +|.
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~--~G~ 211 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ--PGH 211 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec--cCc
Confidence 99999999999999998763 6788899999887 89999999854 653
No 197
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.94 E-value=5.9e-27 Score=231.62 Aligned_cols=179 Identities=23% Similarity=0.259 Sum_probs=126.2
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+.+++++||++++|+.++ ||||||+++++++ |.+|.+.+++.+ +.+++.. .++.....++|+.
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~-----i~~~~~~---~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD-----IRTVTRA---SLRRNIAVVFQDAG 419 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE-----hhhCCHH---HHHhheEEEecCcc
Confidence 457889999999999997 9999999999765 345666676643 5555532 3343332233332
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC-------Cc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF-------GG----LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l-------~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+++.+++..+. .. .. ++.....+..+++ +. ........||||||||++|||++ +++|
T Consensus 420 lf~~Ti~~Ni~~~~-~~--~~--d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal----l~~~ 490 (588)
T PRK13657 420 LFNRSIEDNIRVGR-PD--AT--DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL----LKDP 490 (588)
T ss_pred cccccHHHHHhcCC-CC--CC--HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH----hcCC
Confidence 34555544331 11 11 1112222223332 22 22234567999999999999886 5799
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNV 256 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~i 256 (264)
|+++|||||++||+.+...+.+.|.+..++.|+|+||||...++.||++|. |++|...-
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~--l~~G~i~~ 549 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILV--FDNGRVVE 549 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEE--EECCEEEE
Confidence 999999999999999999999999988778899999999999999999998 67887643
No 198
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.94 E-value=3.1e-27 Score=212.73 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=126.0
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+.+.+++||++++|++++ ||||||+++++++ +..|.+.+.+.. +..++......++.....+.++
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~-----~~~~~~~~~~~~~~~i~~v~q~~~ 99 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEP-----LAKLNRAQRKAFRRDIQMVFQDSI 99 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe-----ccccChhHHHHHHhcEEEEEcChh
Confidence 346778999999999998 9999999999775 345666665532 3333222212222111111111
Q ss_pred --h---hhHHHhhcCCCcC--CCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 129 --F---GSIFSLLLPGSQA--KLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 129 --f---~~vf~~L~~g~~~--~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
| .++++.+...... ..........+..++..+++. ...++++.+|||||+||++|||+++ .+|+++||
T Consensus 100 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~----~~p~lllL 175 (268)
T PRK10419 100 SAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA----VEPKLLIL 175 (268)
T ss_pred hccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHh----cCCCEEEE
Confidence 1 1222221100000 001111122456677788986 5778899999999999999998864 68899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- +++|..
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~--l~~G~i 230 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMV--MDNGQI 230 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999998864 678999999998875 7999988 567754
No 199
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.94 E-value=1.4e-27 Score=223.14 Aligned_cols=179 Identities=20% Similarity=0.162 Sum_probs=123.9
Q ss_pred ccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHH-HHHHHHH----HHHHhhhhh-
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEK-KKIALRE----AWLKVNTDF- 129 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~-~~~~~~~----~~~~v~~~f- 129 (264)
++||++++||+++ |||||||++++++ ++.|.+.+.+.. +...... .....++ .+|......
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~-----i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRT-----LFDSRKGIFLPPEKRRIGYVFQEARLFPH 89 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----CccCccccccchhhCCeEEEecCCccCCC
Confidence 6999999999997 9999999999776 345666666542 2211100 0001111 111111000
Q ss_pred hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 130 GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 130 ~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
-++++++..+... ....+.......++..+++.+..++++.+||||||||++|||+++ .+|+++||||||++||+
T Consensus 90 ~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~----~~p~lllLDEPts~LD~ 164 (354)
T TIGR02142 90 LSVRGNLRYGMKR-ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL----SSPRLLLMDEPLAALDD 164 (354)
T ss_pred CcHHHHHHHHhhc-cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCCcCCCH
Confidence 1344433221110 011111234567777889999899999999999999999998875 68899999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.++..+.++|+++.+ +.++|+|||+...+ ..||+++- |++|..
T Consensus 165 ~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~--l~~G~i 210 (354)
T TIGR02142 165 PRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVV--LEDGRV 210 (354)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE--EeCCEE
Confidence 999999999998864 57899999998765 67999988 668764
No 200
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=8.7e-28 Score=210.01 Aligned_cols=179 Identities=16% Similarity=0.040 Sum_probs=124.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+.+++++||++++||+++ ||||||+++++++ +.+|.+.+.+.. +... ....+.-.++......
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~-----~~~~---~~~~~~~~~q~~~~~~~ 84 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP-----WTRK---DLHKIGSLIESPPLYEN 84 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe-----cccc---ccccEEEEcCCCCcccc
Confidence 346778999999999997 9999999999775 345666655532 2110 0000000111110000
Q ss_pred hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 130 GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 130 ~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
.++++++..+... .. ........++..+++.+..++++.+|||||+||++|||+++ .+|+++||||||++||+
T Consensus 85 ~t~~~~~~~~~~~--~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~----~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 85 LTARENLKVHTTL--LG-LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL----NHPKLLILDEPTNGLDP 157 (223)
T ss_pred CCHHHHHHHHHHH--cC-CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHh----cCCCEEEECCCccCCCH
Confidence 1333332211000 00 11234556677889988889999999999999999998864 78999999999999999
Q ss_pred HHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 210 SHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.++..+.++|+++.+ +.++|++||+...+ +.||+++- +.+|..
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~g~i 202 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGI--ISEGVL 202 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE--EeCCEE
Confidence 999999999998864 67899999999877 67999988 567764
No 201
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.2e-27 Score=211.18 Aligned_cols=184 Identities=19% Similarity=0.178 Sum_probs=124.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----H
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREA----W 122 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~ 122 (264)
.+++++||+|++||+++ ||||||+++++++. +.|++.+.+.. +...+. ....++.. +
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~-----i~~~~~-~~~~~~~~i~~~~ 91 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTD-----IYDRGV-DPVSIRRRVGMVF 91 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEE-----cccccC-ChHHhhccEEEEe
Confidence 46778999999999998 99999999998763 25666666542 221110 00112211 1
Q ss_pred HHhhhhh-hhHHHhhcCCCcC-C-CCCCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 123 LKVNTDF-GSIFSLLLPGSQA-K-LSPPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 123 ~~v~~~f-~~vf~~L~~g~~~-~-l~~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
|...... .++++++..+... . ....+.......++..+++. +..++.+.+||||||||++|||+++ .+|
T Consensus 92 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~----~~p 167 (252)
T PRK14256 92 QKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA----VKP 167 (252)
T ss_pred cCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh----cCC
Confidence 2111111 1344443221100 0 01111123345566667764 3456789999999999999998864 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
+++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- |.+|...
T Consensus 168 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~--l~~G~i~ 226 (252)
T PRK14256 168 EVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAF--FYMGDLV 226 (252)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEE--EECCEEE
Confidence 9999999999999999999999999987778999999998876 78999988 6687653
No 202
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.94 E-value=2.1e-27 Score=213.64 Aligned_cols=181 Identities=17% Similarity=0.128 Sum_probs=123.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG- 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~- 130 (264)
.+++++||++++|++++ ||||||+++++++. ..|.+.+.+.. +..... ...+.....+.++..
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~---~~~~~~i~~v~q~~~~ 98 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP-----LHFGDY---SYRSQRIRMIFQDPST 98 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEE-----CCCCch---hhHhccEEEEecCchh
Confidence 35678999999999998 99999999997753 46666666532 221111 111110000111100
Q ss_pred ------hHHHhhcCCCc--CCCCCCchhhHHHhHHHHcCC-CcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee
Q psy17516 131 ------SIFSLLLPGSQ--AKLSPPAGKDILDGLEVNVAF-GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201 (264)
Q Consensus 131 ------~vf~~L~~g~~--~~l~~~~~~~~~~~l~~~v~l-~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD 201 (264)
++.+.+..... .........+.+..++..+++ +...++++.+|||||+||++||++++ .+|+++|||
T Consensus 99 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~----~~p~lllLD 174 (267)
T PRK15112 99 SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALI----LRPKVIIAD 174 (267)
T ss_pred hcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHH----hCCCEEEEc
Confidence 12222110000 001111112345667778899 46678889999999999999998875 688999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 202 EVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
|||++||+.++..+.++|.++.+ +.++|+|||+...+. .||+++- +++|..
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~--l~~G~i 228 (267)
T PRK15112 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLV--MHQGEV 228 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEE--EECCEE
Confidence 99999999999999999999864 678999999998875 5999988 567765
No 203
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.1e-27 Score=215.84 Aligned_cols=185 Identities=19% Similarity=0.165 Sum_probs=124.2
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh----
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD---- 128 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---- 128 (264)
+++++||++++||+++ ||||||+++++++ +.+|.+.+.+.. +........ ....++.....+.+.
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-i~~~~~~~~--~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA-IPANLKKIK--EVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-ccccccccc--cHHHHhccEEEEEeCcchh
Confidence 5678999999999998 9999999999775 345666555532 100000000 011122111111111
Q ss_pred -h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 129 -F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 129 -f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
| .++.+++..+.. ...........+..++..++++ +..++++.+||||||||++|||+++ .+|+++||||||
T Consensus 103 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~----~~p~lLlLDEPt 178 (289)
T PRK13645 103 LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIA----MDGNTLVLDEPT 178 (289)
T ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCc
Confidence 1 134443321111 0011111123345677788995 6788999999999999999998875 688999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- +++|..
T Consensus 179 ~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~--l~~G~i 229 (289)
T PRK13645 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIV--MHEGKV 229 (289)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999998753 67899999998865 68999988 668864
No 204
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.94 E-value=3.5e-27 Score=203.59 Aligned_cols=169 Identities=19% Similarity=0.188 Sum_probs=118.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||+|++||+++ ||||||+++++++. ..|++.+.+.. +.... ..++.....+.+..
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~----~~~~~~i~~~~q~~~~ 84 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGP-----LDFQR----DSIARGLLYLGHAPGI 84 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe-----ccccc----HHhhhheEEecccccc
Confidence 46778999999999998 99999999997753 45556555532 21111 11221110011110
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
.++++++..... .........++..+++.+..++++.+||||||||++|||+++ .+|+++||||||++
T Consensus 85 ~~~~tv~e~l~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~----~~p~llllDEPt~~ 155 (201)
T cd03231 85 KTTLSVLENLRFWHA-----DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLL----SGRPLWILDEPTTA 155 (201)
T ss_pred CCCcCHHHHHHhhcc-----cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCC
Confidence 133433321110 012234566777889988888999999999999999998864 78999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch-HhhccceeE
Q psy17516 207 LDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM-FSNANVIFR 246 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~-~~~ad~l~~ 246 (264)
||+.++..+.++|+++.+ +.++|+|||+... ...+++++.
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEe
Confidence 999999999999998764 6789999998664 467777764
No 205
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.1e-27 Score=205.30 Aligned_cols=172 Identities=23% Similarity=0.206 Sum_probs=120.6
Q ss_pred ccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHH-HHHHHHHHHHHhhhhhhhHHH
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEK-KKIALREAWLKVNTDFGSIFS 134 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~-~~~~~~~~~~~v~~~f~~vf~ 134 (264)
++||+|++ |+++ ||||||+++++++ +..|.+.+.+.. +...... ....++ +.+++++|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~-------~~i~~~~q 82 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV-----LFDSRKKINLPPQQ-------RKIGLVFQ 82 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe-----cccccchhhhhhHh-------hcEEEEec
Confidence 79999999 9998 9999999999775 345666555532 2111100 001111 12233333
Q ss_pred h--hcCCCcCC---------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 135 L--LLPGSQAK---------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 135 ~--L~~g~~~~---------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
. ++++.+.. ............++..+++.+..++++.+||||||||++||++++ .+|+++|||||
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~llllDEP 158 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALA----AQPELLLLDEP 158 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCC
Confidence 2 11111110 000111234566777889988888999999999999999998864 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- +.+|..
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i 210 (214)
T cd03297 159 FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVV--MEDGRL 210 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEE--EECCEE
Confidence 999999999999999998864 67899999999876 67999987 668864
No 206
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.2e-27 Score=205.07 Aligned_cols=180 Identities=24% Similarity=0.334 Sum_probs=119.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+.+++||++++|++++ ||||||+++++++. ..|.+.+.+.. +...+.. .++.....+.++
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~---~~~~~i~~~~q~~~~ 88 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID-----IRDISRK---SLRSMIGVVLQDTFL 88 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEe-----HHHcCHH---HHhhhEEEecCCchh
Confidence 46778999999999987 99999999997753 45666555532 3322211 122111011111
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhH-----HHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDI-----LDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~-----~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
| .++++++..+.... ........ +..+...+ ++....++.+.+||||||||++||+++ +.+|+++||
T Consensus 89 ~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al----~~~p~llll 163 (229)
T cd03254 89 FSGTIMENIRLGRPNA-TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAM----LRDPKILIL 163 (229)
T ss_pred hhhHHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHH----hcCCCEEEE
Confidence 1 23444432221100 00000000 11122221 344445667899999999999999886 478999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++|+++.++.++|+|||+...++.||+++- |.+|..
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~--l~~g~~ 215 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILV--LDDGKI 215 (229)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEE--EeCCeE
Confidence 9999999999999999999998767899999999998888999988 668765
No 207
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.94 E-value=4.8e-27 Score=207.06 Aligned_cols=180 Identities=21% Similarity=0.285 Sum_probs=120.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+.+++||++++|++++ ||||||+++++++ +..|.+.+.+.. +...+... ++.....+.+.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~~~---~~~~i~~~~q~~~~ 88 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVD-----IRDLNLRW---LRSQIGLVSQEPVL 88 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEe-----hhhcCHHH---HHhhEEEECCchhh
Confidence 36678999999999998 9999999999776 345666666532 22222111 11111001111
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhH-----HHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDI-----LDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~-----~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
| .++.+++..+.... ........ +..+...+ ++....++.+.+|||||+|||+||++++ .+|+++||
T Consensus 89 ~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~----~~p~llll 163 (238)
T cd03249 89 FDGTIAENIRYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL----RNPKILLL 163 (238)
T ss_pred hhhhHHHHhhccCCCC-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 1 24444433221110 00000011 11111122 4444567788999999999999998764 68899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++|+++.++.++|++||+...+..||+++- +.+|..
T Consensus 164 DEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~--l~~G~i 215 (238)
T cd03249 164 DEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAV--LQNGQV 215 (238)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEE--EECCEE
Confidence 9999999999999999999988766789999999998889999988 668864
No 208
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=8.2e-28 Score=233.49 Aligned_cols=182 Identities=19% Similarity=0.185 Sum_probs=124.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc----cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM----TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~----~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+++++||++++|++++ ||||||+++++++. ..|.+.+.+.. +...+... ..+.....+.+..
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~-----~~~~~~~~--~~~~~i~~v~q~~ 87 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP-----LKASNIRD--TERAGIVIIHQEL 87 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE-----CCCCCHHH--HHhCCEEEEeecc
Confidence 45678999999999997 99999999997753 35666666542 32222111 1111011111111
Q ss_pred -----hhHHHhhcCCCcCC-----CCCCchhhHHHhHHHHcCCCccc-ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 130 -----GSIFSLLLPGSQAK-----LSPPAGKDILDGLEVNVAFGGLW-KESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 130 -----~~vf~~L~~g~~~~-----l~~~~~~~~~~~l~~~v~l~~~~-~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
-++++++..+.... .........+..++..+++.+.. ++++.+|||||||||+||++++ .+|+++
T Consensus 88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~----~~p~ll 163 (500)
T TIGR02633 88 TLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN----KQARLL 163 (500)
T ss_pred ccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh----hCCCEE
Confidence 13444432211100 00111123456677788997654 5779999999999999998875 688999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||||||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++- |.+|..
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~--l~~G~i 219 (500)
T TIGR02633 164 ILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICV--IRDGQH 219 (500)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEE--EeCCeE
Confidence 99999999999999999999998865 67899999998876 57999988 668753
No 209
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=5.8e-27 Score=236.22 Aligned_cols=176 Identities=22% Similarity=0.219 Sum_probs=125.5
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+..++++||++++||.++ ||||||+++++++ |++|.+.+++.+ +..++.. .+|+....+.|+.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~-----i~~~~~~---~lr~~i~~v~Q~~~ 563 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP-----REEIPRE---VLANSVAMVDQDIF 563 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe-----HHHCCHH---HHHhheeEEecCCh
Confidence 457889999999999998 9999999999765 456777777753 5555532 3444333333332
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC-------Cc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF-------GG----LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l-------~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+++.+++..+... .. ++.....+..+++ |. ........||||||||++|||++ +++|
T Consensus 564 lf~gTi~eNi~l~~~~----~~-~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal----l~~p 634 (710)
T TIGR03796 564 LFEGTVRDNLTLWDPT----IP-DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL----VRNP 634 (710)
T ss_pred hhhccHHHHhhCCCCC----CC-HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH----hhCC
Confidence 3555555443211 11 1112222222232 22 22344578999999999999886 5799
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
+++|||||||+||+.+...+.+.|++ .+.|+|+||||..++..||+++- |++|...
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iiv--l~~G~i~ 690 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIV--LERGKVV 690 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEE--EeCCEEE
Confidence 99999999999999999999999986 47899999999999999999998 7788754
No 210
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=5.3e-28 Score=212.17 Aligned_cols=198 Identities=19% Similarity=0.260 Sum_probs=150.8
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~ 99 (264)
.+++.+++.++|. +..+++ +|||+|++||+++ ||||||++++.+ .|+.|.+++.+
T Consensus 3 ~lL~v~~l~k~FG----Gl~Al~-------------~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G 65 (250)
T COG0411 3 PLLEVRGLSKRFG----GLTAVN-------------DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65 (250)
T ss_pred ceeeeccceeecC----CEEEEe-------------ceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECC
Confidence 3456778888887 444544 5999999999998 999999999965 34566777777
Q ss_pred HHHHHHHHHhhhHHHHH--HHHHHHHHhhhhhh-hHHHhhcCCCcCC------CC-------CCchhhHHHhHHHHcCCC
Q psy17516 100 RAKLLKVIEELDEKKKI--ALREAWLKVNTDFG-SIFSLLLPGSQAK------LS-------PPAGKDILDGLEVNVAFG 163 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~--~~~~~~~~v~~~f~-~vf~~L~~g~~~~------l~-------~~~~~~~~~~l~~~v~l~ 163 (264)
+ +|..+...+.. .+.++||.+.-..+ +|++++..+.... +. ..+..+.+..++..+|+.
T Consensus 66 ~-----~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~ 140 (250)
T COG0411 66 R-----DITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG 140 (250)
T ss_pred c-----ccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc
Confidence 5 38777766543 34567876632222 6777654432211 11 112234677889999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-Hhh
Q psy17516 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSN 240 (264)
Q Consensus 164 ~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ 240 (264)
++++++..+||+||++|+.||||+| ..|++++||||.|||.+....++.++|+++.+ +.++++|-||..+ |..
T Consensus 141 ~~a~~~A~~LsyG~qR~LEIArALa----~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l 216 (250)
T COG0411 141 ELADRPAGNLSYGQQRRLEIARALA----TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGL 216 (250)
T ss_pred hhhcchhhcCChhHhHHHHHHHHHh----cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhh
Confidence 9999999999999999999999876 68899999999999999999999999999986 3788999999875 689
Q ss_pred ccceeEEEeeCCe
Q psy17516 241 ANVIFRTKFVDGN 253 (264)
Q Consensus 241 ad~l~~v~~~~g~ 253 (264)
|||+|- |.-|.
T Consensus 217 ~dri~V--l~~G~ 227 (250)
T COG0411 217 ADRIVV--LNYGE 227 (250)
T ss_pred ccEEEe--ccCCc
Confidence 999987 44443
No 211
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.9e-28 Score=214.78 Aligned_cols=184 Identities=17% Similarity=0.110 Sum_probs=121.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhcc-------chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-------KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-------~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++|++++ ||||||+++++++.. .|.+.+.+.. +...+. ....++.....+.
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~-----~~~~~~-~~~~~~~~i~~v~ 91 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNEN-----IYSPNL-DVVNLRKRVGMVF 91 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEE-----cccccc-ChHHhhceEEEEe
Confidence 46678999999999998 999999999977643 2556555532 211110 0111121111111
Q ss_pred hhh----hhHHHhhcCCCcC-CCCCC-chhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TDF----GSIFSLLLPGSQA-KLSPP-AGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~f----~~vf~~L~~g~~~-~l~~~-~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++. .++++++..+... ..... ...+....++..+++. +..++++.+|||||+||++|||+++ .+|+
T Consensus 92 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~----~~p~ 167 (251)
T PRK14249 92 QQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA----IEPE 167 (251)
T ss_pred cCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh----cCCC
Confidence 111 1334433221110 00111 1112334444555653 4567899999999999999998864 7889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.+...+.++|+++.++.++|+|||+...+ +.||+++- +++|...
T Consensus 168 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~--l~~G~i~ 225 (251)
T PRK14249 168 VILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGF--LLTGDLV 225 (251)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEE--EeCCeEE
Confidence 999999999999999999999999886678999999998876 56899988 6687653
No 212
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=7.4e-27 Score=203.56 Aligned_cols=175 Identities=23% Similarity=0.282 Sum_probs=119.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||++++|++++ ||||||+++++++ +.+|.+.+.+.. +...+... +++....+.+.
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~~---~~~~i~~~~q~~~l 89 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVD-----ISKIGLHD---LRSRISIIPQDPVL 89 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE-----hHhCCHHH---HhhhEEEECCCCcc
Confidence 56788999999999998 9999999999775 446666666542 33222111 12111011111
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+ .++.+++..... ... .....++..+++.+ ..++++..|||||+||++|||+++ .+|+
T Consensus 90 ~~~tv~enl~~~~~-----~~~-~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~----~~p~ 159 (221)
T cd03244 90 FSGTIRSNLDPFGE-----YSD-EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL----RKSK 159 (221)
T ss_pred ccchHHHHhCcCCC-----CCH-HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh----cCCC
Confidence 1 133333321110 111 11222233334333 234688999999999999998864 7889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.++.++|++||+......||+++- |++|..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~--l~~g~~ 215 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILV--LDKGRV 215 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEE--EECCeE
Confidence 99999999999999999999999988767889999999998888999988 668754
No 213
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.9e-28 Score=214.57 Aligned_cols=185 Identities=20% Similarity=0.192 Sum_probs=121.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhcc-------chhHHHhhHHHHHHHHHhhhHHHHHHHHHH----
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-------KKSIVESDRAKLLKVIEELDEKKKIALREA---- 121 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-------~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~---- 121 (264)
+.+++++||+|++||+++ +|||||+++++++.. +|++.+.+.. +..... ....++..
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~-----~~~~~~-~~~~~~~~i~~~ 90 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQD-----IYGPRV-DPVAMRRRVGMV 90 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEE-----cccCcc-CHHHhhceeEEE
Confidence 346778999999999997 999999999987632 4666665532 221100 00111111
Q ss_pred HHHhhhhh-hhHHHhhcCCCc-CCCCCCc-hhhHHHhHHHHcCC----CcccccccCCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 122 WLKVNTDF-GSIFSLLLPGSQ-AKLSPPA-GKDILDGLEVNVAF----GGLWKESLGELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 122 ~~~v~~~f-~~vf~~L~~g~~-~~l~~~~-~~~~~~~l~~~v~l----~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
+|...... .++++++..+.. ....... ..+.+..++..+++ .+..++++.+|||||+||++|||+++ .+
T Consensus 91 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~ 166 (252)
T PRK14272 91 FQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA----VE 166 (252)
T ss_pred eccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh----cC
Confidence 12111111 134443321110 0110111 11223333334443 34567889999999999999998864 78
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHh-hccceeEEEeeCCeEE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFS-NANVIFRTKFVDGNSN 255 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s~ 255 (264)
|+++||||||++||+.++..+.++|++++++.++|++||+...+. .||+++- |.+|...
T Consensus 167 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~G~i~ 226 (252)
T PRK14272 167 PEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSF--FLVGDLV 226 (252)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 899999999999999999999999999876788999999998765 7999988 6788653
No 214
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.94 E-value=1.2e-27 Score=213.78 Aligned_cols=163 Identities=19% Similarity=0.213 Sum_probs=115.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKV--NTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v--~~~f 129 (264)
.+++++||++++|++++ ||||||+++++++ +.+|.+.+.+.. .+.-+ +|.. ...+
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~----~i~~v-----------~q~~~~~~~l 82 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL----RIGYV-----------PQKLYLDTTL 82 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCcc----CEEEe-----------cccccccccc
Confidence 46678999999999997 9999999999775 345554443210 00000 0100 0000
Q ss_pred -hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCC
Q psy17516 130 -GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208 (264)
Q Consensus 130 -~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD 208 (264)
.++.+.+... .....+.+..++..+++.+..++++.+|||||+||++||++++ .+|+++||||||++||
T Consensus 83 ~~~~~~~~~~~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD 152 (251)
T PRK09544 83 PLTVNRFLRLR------PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALL----NRPQLLVLDEPTQGVD 152 (251)
T ss_pred ChhHHHHHhcc------ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCC
Confidence 0122221100 0011223456677889988889999999999999999998864 6889999999999999
Q ss_pred HHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEE
Q psy17516 209 LSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 209 ~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v 247 (264)
+.++..+.++|+++.+ +.++|+|||+...+ +.||+++-+
T Consensus 153 ~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 153 VNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999998764 67899999999876 679999873
No 215
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=9e-27 Score=230.00 Aligned_cols=177 Identities=24% Similarity=0.313 Sum_probs=127.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
..++++||++++|+.++ ||||||+++++++ +.+|.+.+++.+ +.+++.. .++.....+.|+
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~-----i~~~~~~---~~r~~i~~v~Q~~~l 425 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP-----IADYSEA---ALRQAISVVSQRVHL 425 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-----hhhCCHH---HHHhheeEEcccchh
Confidence 46789999999999998 9999999999764 456777777653 5555532 334322222222
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccc----------cccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWK----------ESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~----------~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
| +++.+++..+. +...++.+...+..+++.+... .....||||||||++|||++ +++||+
T Consensus 426 f~~ti~~Ni~~~~-----~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal----l~~~~i 496 (574)
T PRK11160 426 FSATLRDNLLLAA-----PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL----LHDAPL 496 (574)
T ss_pred hcccHHHHhhcCC-----CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH----hcCCCE
Confidence 1 24444443321 1112223344444556544332 25678999999999999886 579999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
++|||||++||+.+...+.+.|.+..++.|+|+||||..++..||+++- |++|...
T Consensus 497 lilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~--l~~G~i~ 552 (574)
T PRK11160 497 LLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICV--MDNGQII 552 (574)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEE--EeCCeEE
Confidence 9999999999999999999999998878899999999999999999988 6788653
No 216
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.5e-27 Score=209.45 Aligned_cols=183 Identities=18% Similarity=0.138 Sum_probs=122.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhcc-------chhHHHhhHHHHHHHHHh-hhHHHHHHHHHHHHH
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-------KKSIVESDRAKLLKVIEE-LDEKKKIALREAWLK 124 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-------~~~~~~~~~~~l~~~I~~-l~~~~~~~~~~~~~~ 124 (264)
+.+++++||++++||+++ ||||||+++++++.+ .|++.+.+.. +.. .+. ..++.....
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~-----~~~~~~~---~~~~~~i~~ 87 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED-----IYGNIDV---ADLRIKVGM 87 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE-----cccccch---HHHHhheeE
Confidence 346778999999999997 999999999977643 5666655532 210 110 111211111
Q ss_pred hhhh---h-hhHHHhhcCCCcC-CCCCCc-hhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 125 VNTD---F-GSIFSLLLPGSQA-KLSPPA-GKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 125 v~~~---f-~~vf~~L~~g~~~-~l~~~~-~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
+.++ | .++++++..+... ...... ..+....++..+++. +..++++.+|||||+|||+|||+++ .+
T Consensus 88 ~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~----~~ 163 (249)
T PRK14253 88 VFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA----ME 163 (249)
T ss_pred EecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH----cC
Confidence 1111 1 2444443322111 111111 112233445556653 4567889999999999999998864 68
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|+++||||||++||+.++..+.++|++++++.++|+|||+...+ +.||+++- +.+|...
T Consensus 164 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~--l~~G~i~ 223 (249)
T PRK14253 164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAF--FLMGELV 223 (249)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEE--EECCEEE
Confidence 89999999999999999999999999987778999999998875 56999988 6688653
No 217
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=227.89 Aligned_cols=181 Identities=18% Similarity=0.155 Sum_probs=126.6
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh----
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD---- 128 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---- 128 (264)
+++++||+|++||+++ ||||||+++++++ ++.|++.+.+.. +...+.. ..++.....+.+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~-----~~~~~~~--~~~~~~i~~v~q~~~~~ 350 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD-----ISPRSPL--DAVKKGMAYITESRRDN 350 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE-----CCCCCHH--HHHHCCcEEccCccccC
Confidence 5788999999999997 9999999999775 346666666532 2221111 1111111111221
Q ss_pred --h--hhHHHhhcCCCcC---------CC-CCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcC
Q psy17516 129 --F--GSIFSLLLPGSQA---------KL-SPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFK 193 (264)
Q Consensus 129 --f--~~vf~~L~~g~~~---------~l-~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~ 193 (264)
| -++++++..+... .. ........+..++..+++. +..++++.+|||||||||+|||+++ .
T Consensus 351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~----~ 426 (510)
T PRK09700 351 GFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC----C 426 (510)
T ss_pred CCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh----c
Confidence 1 1355544322110 00 0011112345677788996 7789999999999999999998864 6
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- +.+|..
T Consensus 427 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~--l~~G~i 487 (510)
T PRK09700 427 CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAV--FCEGRL 487 (510)
T ss_pred CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEE--EECCEE
Confidence 8999999999999999999999999998754 67899999998765 67999988 668864
No 218
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.94 E-value=3.6e-27 Score=209.56 Aligned_cols=182 Identities=15% Similarity=0.177 Sum_probs=122.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+++++||++++||+++ ||||||+++++++ +..|++.+.+.. +..++...+... .+..+.+..
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~-----~~~~~~~~~~~~--~~~~~~q~~ 93 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGES-----ILDLEPEERAHL--GIFLAFQYP 93 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEE-----cccCChhhhhee--eEEEEeccc
Confidence 46778999999999998 9999999999875 346666665532 333322111110 000011110
Q ss_pred ---h--hHHHhhcCCCcC-----CCCCCc---hhhHHHhHHHHcCCC-cccccccC-CCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 130 ---G--SIFSLLLPGSQA-----KLSPPA---GKDILDGLEVNVAFG-GLWKESLG-ELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 130 ---~--~vf~~L~~g~~~-----~l~~~~---~~~~~~~l~~~v~l~-~~~~~~~~-~LSGGekqrvaiA~~la~~l~~~ 194 (264)
. .+.+.+..+... ...... ....+..++..+++. ...++++. .|||||+||++||++++ .+
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~----~~ 169 (252)
T CHL00131 94 IEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMAL----LD 169 (252)
T ss_pred cccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHH----cC
Confidence 0 122221111000 000001 112345667788887 46677887 59999999999998864 78
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhh--ccceeEEEeeCCeE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSN--ANVIFRTKFVDGNS 254 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~--ad~l~~v~~~~g~s 254 (264)
|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...... ||+++- +.+|..
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~--l~~G~i 230 (252)
T CHL00131 170 SELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHV--MQNGKI 230 (252)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEE--EeCCEE
Confidence 899999999999999999999999998864 6889999999988764 899987 567765
No 219
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=3e-27 Score=204.29 Aligned_cols=169 Identities=22% Similarity=0.240 Sum_probs=117.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||++++||+++ ||||||+++++++ +..|.+.+.+.. +.... ..++.....+.+..
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~-----~~~~~----~~~~~~~~~~~~~~~~ 85 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEP-----IRRQR----DEYHQDLLYLGHQPGI 85 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----cccch----HHhhhheEEeCCcccc
Confidence 46778999999999998 9999999999775 345566555532 22111 11111100011110
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
.++++++..+.. .......+.+..++..+|+.+..++++.+||||||||++||+++ +.+|++++|||||++
T Consensus 86 ~~~~tv~e~l~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al----~~~p~llllDEPt~~ 159 (204)
T PRK13538 86 KTELTALENLRFYQR--LHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLW----LTRAPLWILDEPFTA 159 (204)
T ss_pred CcCCcHHHHHHHHHH--hcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH----hcCCCEEEEeCCCcc
Confidence 133333221110 00011223456677788998888899999999999999999876 478999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccc
Q psy17516 207 LDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANV 243 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~ 243 (264)
||+.++..+.++|+++.+ +.++|+|||+...+..|+.
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 999999999999998754 6789999999998876664
No 220
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-27 Score=216.11 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=127.6
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc-------cchhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSI 95 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~ 95 (264)
+++++++.++|.. +.+++++||+|++||+++ ||||||+++++++. ..|.+
T Consensus 20 ~l~~~nl~~~~~~-----------------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (274)
T PRK14265 20 VFEVEGVKVFYGG-----------------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL 82 (274)
T ss_pred eEEEeeEEEEeCC-----------------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence 5667778888861 346678999999999997 99999999997753 24666
Q ss_pred HHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC----Ccccc
Q psy17516 96 VESDRAKLLKVIEELDEKKKIALREAWLKVNTD---F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF----GGLWK 167 (264)
Q Consensus 96 ~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l----~~~~~ 167 (264)
.+.+.. +..... ....++.....+.++ | .++++++..+..........+.....++..+++ .+..+
T Consensus 83 ~~~g~~-----l~~~~~-~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (274)
T PRK14265 83 LYRDRN-----IYDSQI-NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLK 156 (274)
T ss_pred EECCEe-----cccccc-hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhc
Confidence 555532 211100 011122111111111 1 234444332211000000111223344445555 34567
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeE
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFR 246 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~ 246 (264)
+++.+|||||+|||+|||+++ .+|+++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++-
T Consensus 157 ~~~~~LSgGq~qrv~LAraL~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~ 232 (274)
T PRK14265 157 EKGTALSGGQQQRLCIARAIA----MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAF 232 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 889999999999999998874 6889999999999999999999999999987778899999998766 68999988
Q ss_pred E
Q psy17516 247 T 247 (264)
Q Consensus 247 v 247 (264)
+
T Consensus 233 l 233 (274)
T PRK14265 233 F 233 (274)
T ss_pred E
Confidence 4
No 221
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.6e-27 Score=228.16 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=126.1
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc---cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM---TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~---~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
+++++||+|++||+++ ||||||+++++++. +.|.+.+.+.. +...... ...+.....+.+.
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~-----~~~~~~~--~~~~~~i~~v~q~~~~ 349 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP-----VKIRNPQ--QAIAQGIAMVPEDRKR 349 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEE-----CCCCCHH--HHHHCCCEEeCcchhh
Confidence 5678999999999997 99999999998762 46666665532 2211111 1111111111111
Q ss_pred ---h--hhHHHhhcCCCcCCC------CCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 ---F--GSIFSLLLPGSQAKL------SPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 ---f--~~vf~~L~~g~~~~l------~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+ -++++++..+..... ........+..++..+++. +..++++.+|||||||||+||++++ .+|+
T Consensus 350 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~----~~p~ 425 (506)
T PRK13549 350 DGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL----LNPK 425 (506)
T ss_pred CCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh----hCCC
Confidence 1 134444322110000 1111123456777888996 5789999999999999999998875 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |.+|..
T Consensus 426 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~--l~~G~i 483 (506)
T PRK13549 426 ILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLV--MHEGKL 483 (506)
T ss_pred EEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999999998864 67899999998765 67999987 678865
No 222
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-27 Score=216.31 Aligned_cols=196 Identities=22% Similarity=0.211 Sum_probs=132.0
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc-------cchhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSI 95 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~ 95 (264)
+++++++.++|. .+.+++++||++++||+++ ||||||++++.++. ..|++
T Consensus 21 ~l~i~nl~~~~~-----------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i 83 (276)
T PRK14271 21 AMAAVNLTLGFA-----------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV 83 (276)
T ss_pred EEEEeeEEEEEC-----------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE
Confidence 346677777776 2356778999999999997 99999999997763 25666
Q ss_pred HHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---h-hhHHHhhcCCCcC-CC-CCCchhhHHHhHHHHcCCCc----c
Q psy17516 96 VESDRAKLLKVIEELDEKKKIALREAWLKVNTD---F-GSIFSLLLPGSQA-KL-SPPAGKDILDGLEVNVAFGG----L 165 (264)
Q Consensus 96 ~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f-~~vf~~L~~g~~~-~l-~~~~~~~~~~~l~~~v~l~~----~ 165 (264)
.+.+.. +...... ..++.....+.+. | .++++++..+... .. ...........++..+++.. .
T Consensus 84 ~~~g~~-----i~~~~~~--~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 156 (276)
T PRK14271 84 LLGGRS-----IFNYRDV--LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDR 156 (276)
T ss_pred EECCEE-----ccccchh--HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhH
Confidence 665532 2221110 1111111111111 1 2445443221100 00 00111122345556677753 3
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccce
Q psy17516 166 WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVI 244 (264)
Q Consensus 166 ~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l 244 (264)
.++.+.+|||||+||++|||+++ .+|+++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||++
T Consensus 157 l~~~~~~LSgGq~qrl~LAral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri 232 (276)
T PRK14271 157 LSDSPFRLSGGQQQLLCLARTLA----VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRA 232 (276)
T ss_pred hhCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 56789999999999999998874 6889999999999999999999999999987678999999998875 679999
Q ss_pred eEEEeeCCeE
Q psy17516 245 FRTKFVDGNS 254 (264)
Q Consensus 245 ~~v~~~~g~s 254 (264)
+- |.+|..
T Consensus 233 ~~--l~~G~i 240 (276)
T PRK14271 233 AL--FFDGRL 240 (276)
T ss_pred EE--EECCEE
Confidence 88 668864
No 223
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.5e-28 Score=214.66 Aligned_cols=178 Identities=16% Similarity=0.076 Sum_probs=119.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhcc-------chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-------KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-------~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||++++||+++ ||||||+++++++.. +|.+.+.+.. +...+. ....++.....+.
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~-----i~~~~~-~~~~~~~~i~~v~ 94 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQN-----IYDPRI-NINRLRRQIGMVF 94 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEe-----cccccc-chHhhhhheEEEe
Confidence 35678999999999998 999999999977532 4666665532 211100 0111111111111
Q ss_pred hh---h-hhHHHhhcCCCcCC--CCCCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQAK--LSPPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~~~--l~~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++ | .++++++..+.... ............++..+++. +..++.+.+|||||+||++|||+++ .+|+
T Consensus 95 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~ 170 (259)
T PRK14260 95 QRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA----IKPK 170 (259)
T ss_pred cccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh----cCCC
Confidence 11 1 23444432211100 00011122344556666763 4567889999999999999998864 7889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v 247 (264)
++||||||++||+.+...+.++|+++.++.++|+|||+...+ +.||+++-+
T Consensus 171 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 171 VLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 999999999999999999999999987678999999998876 679998884
No 224
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.4e-27 Score=207.93 Aligned_cols=184 Identities=20% Similarity=0.148 Sum_probs=123.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----c---cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----M---TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~---~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+.+++||++++||+++ ||||||+++++++ + ..|.+.+.+.. +..... ....++.....+.
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~-----~~~~~~-~~~~~~~~i~~v~ 92 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHN-----IYSPRT-DTVDLRKEIGMVF 92 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEE-----CcCccc-chHhhhhcEEEEe
Confidence 46678999999999997 9999999999765 3 25666665532 211110 0111121111111
Q ss_pred hh---h-hhHHHhhcCCCc-CCCCCCc-hhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQ-AKLSPPA-GKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~-~~l~~~~-~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++ | .++++++..+.. ....... ....+..++..+++. +..++++.+||||||||++|||+++ .+|+
T Consensus 93 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~----~~p~ 168 (252)
T PRK14239 93 QQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA----TSPK 168 (252)
T ss_pred cCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh----cCCC
Confidence 11 1 244444321110 0111111 122344555566653 3467889999999999999998864 7889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- |.+|...
T Consensus 169 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~--l~~G~i~ 226 (252)
T PRK14239 169 IILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGF--FLDGDLI 226 (252)
T ss_pred EEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999999999987678899999998754 67999988 6688653
No 225
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7e-27 Score=207.62 Aligned_cols=184 Identities=18% Similarity=0.151 Sum_probs=123.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+.+++||++++||+++ ||||||+++++++. ..|++.+.+.. +...+ .....++.....+.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~-----~~~~~-~~~~~~~~~i~~~~ 90 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD-----IYKSD-IDVNQLRKRVGMVF 90 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE-----ccccc-cchHHHhccEEEEe
Confidence 35678999999999997 99999999998752 35667666642 22110 00111221111111
Q ss_pred hh---h-hhHHHhhcCCCcC-CCCCC-chhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQA-KLSPP-AGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~~-~l~~~-~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++ | .++++++..+... ..... ...+.+..++..+++. +..++++.+|||||+||++|||++ +.+|+
T Consensus 91 q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral----~~~p~ 166 (250)
T PRK14240 91 QQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL----AVEPE 166 (250)
T ss_pred cCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH----hcCCC
Confidence 11 1 2344443322110 01011 1123344555566653 456788999999999999999886 47889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- +.+|...
T Consensus 167 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~--l~~G~i~ 224 (250)
T PRK14240 167 VLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAF--FLNGEIV 224 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEE--EECCEEE
Confidence 999999999999999999999999987678899999998865 67999988 6687653
No 226
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.4e-27 Score=206.89 Aligned_cols=169 Identities=21% Similarity=0.166 Sum_probs=119.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||+|++||+++ ||||||+++++++ +.+|.+.+.+.. +.. . . ++.....+.+..
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~-~--~---~~~~~~~~~~~~~~ 84 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD-----IDD-P--D---VAEACHYLGHRNAM 84 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe-----Ccc-h--h---hHhhcEEecCCCcC
Confidence 46778999999999997 9999999999776 446666666532 111 0 0 121111111110
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
.++.+++..... .... ....+..++..+|+.+..++++.+|||||+||++||++++ .+|+++||||||++
T Consensus 85 ~~~~tv~~~l~~~~~--~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~ 157 (207)
T PRK13539 85 KPALTVAENLEFWAA--FLGG-EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLV----SNRPIWILDEPTAA 157 (207)
T ss_pred CCCCcHHHHHHHHHH--hcCC-cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCccc
Confidence 133333211100 0001 1223566777889988778899999999999999998864 68899999999999
Q ss_pred CCHHHHHHHHHHHHHhh-cCCeEEEEEeCcchHhhccceeEE
Q psy17516 207 LDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGMFSNANVIFRT 247 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~~~ad~l~~v 247 (264)
||+.+...+.++|+++. ++.++|+|||+...+.. |+++.+
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~ 198 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDL 198 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEee
Confidence 99999999999999875 46789999999988887 888874
No 227
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1e-27 Score=208.73 Aligned_cols=174 Identities=20% Similarity=0.159 Sum_probs=120.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG- 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~- 130 (264)
.+.+++||++++||+++ ||||||++++.++ +..|++.+.+.. +.... .+..+.-.++. ...+.
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----i~~~~--~~~~i~~~~q~-~~~~~~ 96 (214)
T PRK13543 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKT-----ATRGD--RSRFMAYLGHL-PGLKAD 96 (214)
T ss_pred eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEE-----ccchh--hhhceEEeecC-cccccC
Confidence 46778999999999997 9999999999775 345666665532 22110 00000000010 00010
Q ss_pred -hHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 -SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 -~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++++++..+. ........+...+++..+++.+..++++.+||||||||++|||+++ .+|+++||||||++||+
T Consensus 97 ~t~~e~l~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~ 170 (214)
T PRK13543 97 LSTLENLHFLC--GLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWL----SPAPLWLLDEPYANLDL 170 (214)
T ss_pred CcHHHHHHHHH--HhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCH
Confidence 2333221110 0001112234566777889988889999999999999999998864 78999999999999999
Q ss_pred HHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEE
Q psy17516 210 SHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v 247 (264)
.+...+.++|+++.+ +.++|++||+...+ +.||+++.+
T Consensus 171 ~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l 210 (214)
T PRK13543 171 EGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTL 210 (214)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEE
Confidence 999999999998754 68899999998866 689998874
No 228
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=5.2e-27 Score=202.22 Aligned_cols=168 Identities=21% Similarity=0.159 Sum_probs=119.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHH----HHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAW----LKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~----~~v~~ 127 (264)
.+++++||++++||+++ ||||||+++++++ ++.|++.+.+.. +... ...++... +....
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~-----~~~~----~~~~~~~i~~~~q~~~~ 85 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQS-----IKKD----LCTYQKQLCFVGHRSGI 85 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCc-----cccC----HHHHHhheEEecccccc
Confidence 46778999999999998 9999999999776 446666665532 2211 11122111 11111
Q ss_pred hh-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 128 DF-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 128 ~f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
.+ .++++++..+.. .. ........++..+++.+..++++.+|||||+||++|||+++ .+|+++||||||++
T Consensus 86 ~~~~tv~~~~~~~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~----~~p~~lilDEP~~~ 157 (200)
T PRK13540 86 NPYLTLRENCLYDIH--FS--PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWM----SKAKLWLLDEPLVA 157 (200)
T ss_pred CcCCCHHHHHHHHHh--cC--cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCCcc
Confidence 11 134443321110 01 11224566677788887778889999999999999998864 68899999999999
Q ss_pred CCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccce
Q psy17516 207 LDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVI 244 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l 244 (264)
||+.++..+.++|+++++ +.++|+|||+......||..
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchh
Confidence 999999999999998754 67899999999999999853
No 229
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-27 Score=214.10 Aligned_cols=197 Identities=17% Similarity=0.150 Sum_probs=130.4
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc-------cchhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSI 95 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~ 95 (264)
+.+++++.+.|.. +.+++++||++++||+++ ||||||+++++++. ..|.+
T Consensus 24 ~l~~~~l~~~~~~-----------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 86 (271)
T PRK14238 24 VFDTQNLNLWYGE-----------------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86 (271)
T ss_pred EEEEeeeEEEECC-----------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE
Confidence 4567777777751 235678999999999998 99999999997753 45666
Q ss_pred HHhhHHHHHHHHHhhhHHHHHHHHHH----HHHhhhhhhhHHHhhcCCCcC-CCCCC-chhhHHHhHHHHcC----CCcc
Q psy17516 96 VESDRAKLLKVIEELDEKKKIALREA----WLKVNTDFGSIFSLLLPGSQA-KLSPP-AGKDILDGLEVNVA----FGGL 165 (264)
Q Consensus 96 ~~~~~~~l~~~I~~l~~~~~~~~~~~----~~~v~~~f~~vf~~L~~g~~~-~l~~~-~~~~~~~~l~~~v~----l~~~ 165 (264)
.+.+.. +...+. ....++.. +|.......++++++..+... ..... .....+..++..++ +.+.
T Consensus 87 ~~~g~~-----~~~~~~-~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 160 (271)
T PRK14238 87 LYRDQN-----IFDKSY-SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDR 160 (271)
T ss_pred EECCEE-----cccccc-cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHH
Confidence 666532 211100 01111211 121110012444443221100 11111 11122233333332 3445
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccce
Q psy17516 166 WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVI 244 (264)
Q Consensus 166 ~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l 244 (264)
.++++.+||||||||++|||+++ .+|+++||||||++||+.+...+.++|+++.++.++|+|||+...+ +.||++
T Consensus 161 ~~~~~~~LSgGe~qrv~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 161 LHDNAYGLSGGQQQRLCIARCLA----IEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred HhcCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEE
Confidence 67889999999999999998864 6889999999999999999999999999987778999999999875 679999
Q ss_pred eEEEeeCCeE
Q psy17516 245 FRTKFVDGNS 254 (264)
Q Consensus 245 ~~v~~~~g~s 254 (264)
+- +.+|..
T Consensus 237 ~~--l~~G~i 244 (271)
T PRK14238 237 AF--FLNGYV 244 (271)
T ss_pred EE--EECCEE
Confidence 88 668865
No 230
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.1e-27 Score=232.44 Aligned_cols=201 Identities=19% Similarity=0.187 Sum_probs=134.9
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~ 99 (264)
.+.+++++.+.|....-. ..+++++||+|++||+++ ||||||+++++++. ..|.+.+.+
T Consensus 11 ~~l~v~~l~~~y~~~~~~-------------~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g 77 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQK-------------IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77 (623)
T ss_pred ceEEEeceEEEecCCCCc-------------eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECC
Confidence 356778888888532100 235667999999999998 99999999998763 344444443
Q ss_pred HHHHH----H--HHHhhhHHHHHHHHHHHHHhhhhhhhHHHh----hcCCCcC------------CCCCCchhhHHHhHH
Q psy17516 100 RAKLL----K--VIEELDEKKKIALREAWLKVNTDFGSIFSL----LLPGSQA------------KLSPPAGKDILDGLE 157 (264)
Q Consensus 100 ~~~l~----~--~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~----L~~g~~~------------~l~~~~~~~~~~~l~ 157 (264)
.. +. . .+...+......++ ...+++|||. +++..+. .....+..+.+..++
T Consensus 78 ~~-~~~~~~~~~~~~~~~~~~~~~~r------~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l 150 (623)
T PRK10261 78 ML-LRRRSRQVIELSEQSAAQMRHVR------GADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRML 150 (623)
T ss_pred EE-eccccccccccccCCHHHHHHHh------CCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 21 00 0 01111211111222 1123444442 1222111 011111223456677
Q ss_pred HHcCCCc---ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEE
Q psy17516 158 VNVAFGG---LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVS 232 (264)
Q Consensus 158 ~~v~l~~---~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVT 232 (264)
..+|+++ ..++++.+|||||||||+||++|+ .+|+++||||||++||+.++..+.++|+++++ +.++|+||
T Consensus 151 ~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~----~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 151 DQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS----CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred HHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh----CCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 7889964 568899999999999999998864 68899999999999999999999999999863 67899999
Q ss_pred eCcchH-hhccceeEEEeeCCeE
Q psy17516 233 LKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 233 H~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||...+ ..||+++- |.+|..
T Consensus 227 Hdl~~~~~~adri~v--l~~G~i 247 (623)
T PRK10261 227 HDMGVVAEIADRVLV--MYQGEA 247 (623)
T ss_pred CCHHHHHHhCCEEEE--eeCCee
Confidence 998775 67999988 668754
No 231
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4e-27 Score=213.95 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=123.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++||+++ ||||||+++++++. ..|.+.+.+.. +..... ....++.....+.
T Consensus 53 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~-----i~~~~~-~~~~~~~~i~~v~ 126 (285)
T PRK14254 53 QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN-----VYDADV-DPVALRRRIGMVF 126 (285)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE-----cccccc-chHhhhccEEEEe
Confidence 46778999999999997 99999999997763 46777666642 211110 0011111110111
Q ss_pred hh---h-hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 127 TD---F-GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
++ | .++++++..+.. .... ......+..++..+++. +..++++.+||||||||++|||+++ .+|++
T Consensus 127 q~~~l~~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~----~~p~l 201 (285)
T PRK14254 127 QKPNPFPKSIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA----PDPEV 201 (285)
T ss_pred cCCccCcCCHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH----cCCCE
Confidence 11 1 133433321100 0011 11223445666677764 4567889999999999999998864 78899
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||||||++||+.++..+.++|++++++.++|+|||+...+ ..||+++-+ +++|..
T Consensus 202 LLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~-l~~G~i 258 (285)
T PRK14254 202 ILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVF-LTGGEL 258 (285)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEE-eeCCEE
Confidence 99999999999999999999999987678899999998876 569987542 467765
No 232
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=1.3e-26 Score=233.68 Aligned_cols=178 Identities=20% Similarity=0.240 Sum_probs=127.2
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+..++++||++++|+.++ ||||||+++++++ |++|.+.+++.+ +.+++.. .+|+....|.|+
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~-----i~~~~~~---~lr~~i~~v~Q~~~ 558 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS-----LKDIDRH---TLRQFINYLPQEPY 558 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEE-----HHHcCHH---HHHHheEEEecCce
Confidence 356789999999999998 9999999999765 456777777753 5556533 344333333333
Q ss_pred -h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-------CCc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 -F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-------FGG----LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 -f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-------l~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| +++.+++..|..... ..++ +...+..++ +|. ........||||||||++||||+ +++|
T Consensus 559 lf~gTI~eNi~l~~~~~~---~~~~-i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARal----l~~p 630 (708)
T TIGR01193 559 IFSGSILENLLLGAKENV---SQDE-IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL----LTDS 630 (708)
T ss_pred ehhHHHHHHHhccCCCCC---CHHH-HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHH----hhCC
Confidence 2 466666654421111 1111 112222222 222 22345678999999999999886 5799
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|++||||||++||+.+...+.+.|++. ++.|+|+||||..+++.||+++- |++|...
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~--l~~G~i~ 687 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIV--LDHGKII 687 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEE--EECCEEE
Confidence 999999999999999999999999875 56799999999999999999998 7788763
No 233
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.94 E-value=9e-27 Score=197.24 Aligned_cols=151 Identities=20% Similarity=0.239 Sum_probs=112.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+.+++||++++||+++ ||||||+++++++ +..|.+.+++.. +... ...+ ...+++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~-----~~~~----~~~~-------~~~i~~ 79 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP-----VSDL----EKAL-------SSLISV 79 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEE-----HHHH----HHHH-------HhhEEE
Confidence 35678999999999997 9999999999776 345666665532 2211 0111 133455
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
+++... +.. ....+.+ +..|||||+||++|||+++ .+|+++||||||++||+.+
T Consensus 80 ~~q~~~------~~~---~tv~~~i-------------~~~LS~G~~qrv~laral~----~~p~~lllDEP~~~LD~~~ 133 (178)
T cd03247 80 LNQRPY------LFD---TTLRNNL-------------GRRFSGGERQRLALARILL----QDAPIVLLDEPTVGLDPIT 133 (178)
T ss_pred EccCCe------eec---ccHHHhh-------------cccCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHH
Confidence 555310 000 0111111 7899999999999998864 7889999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 212 TQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 212 ~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
...+.++|+++.++.++|++||+...++.||+++- |.+|..
T Consensus 134 ~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~--l~~g~i 174 (178)
T cd03247 134 ERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILF--LENGKI 174 (178)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE--EECCEE
Confidence 99999999988767889999999999989999988 668764
No 234
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=9.1e-27 Score=227.28 Aligned_cols=187 Identities=19% Similarity=0.151 Sum_probs=124.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHh-hHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVES-DRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~-~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
.+++++||+|++||+++ ||||||+++++++. +.|.+.+. ++.. ..+...+......++.....+.+..
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~--~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEW--VDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcc--ccccccchhhHHHHhhhEEEEccCcc
Confidence 35678999999999998 99999999998763 45666553 3210 0011111101111111111111111
Q ss_pred ----hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 130 ----GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 130 ----~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
-++++++..+.............+..++..+++.+ ..++++.+|||||||||+|||+++ .+|+++||
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~----~~p~lLll 451 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI----KEPRIVIL 451 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 13444332110001111111234556777889975 568999999999999999998864 78899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++- |.+|..
T Consensus 452 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~--l~~G~i 506 (520)
T TIGR03269 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAAL--MRDGKI 506 (520)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999998863 67899999998876 57999988 668865
No 235
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.94 E-value=4.4e-27 Score=229.58 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=110.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
..++++||++++|+.++ ||||||+++++++ +++|++.+++.+ +.++ ...+|+.+..|+|+.
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~-----i~~~----~~~lr~~i~~V~Q~~~l 419 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS-----VSSL----QDELRRRISVFAQDAHL 419 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-----hhhH----HHHHHhheEEEccCccc
Confidence 36789999999999998 9999999998764 456677777643 4433 244554443344432
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC-------Ccccc----cccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF-------GGLWK----ESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l-------~~~~~----~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+++.+++..|.. ...++.....+..+++ |+..+ .....||||||||+|||||+ +++||
T Consensus 420 F~~TI~eNI~~g~~-----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal----l~~~~ 490 (529)
T TIGR02868 420 FDTTVRDNLRLGRP-----DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL----LADAP 490 (529)
T ss_pred ccccHHHHHhccCC-----CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH----hcCCC
Confidence 355555544321 1111222223333333 22223 33467999999999999876 58999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
+++||||||+||+.+...|.+.|.+..++.|+|+||||.
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999887789999999984
No 236
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.4e-27 Score=206.48 Aligned_cols=183 Identities=22% Similarity=0.223 Sum_probs=126.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG- 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~- 130 (264)
.+.+++||++++|++++ +|||||+++++++ +..|.+.+.+.. +...... +..+.-.++......+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~-----~~~~~~~-~~~i~~~~q~~~~~~~~ 87 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKD-----ITNLPPH-KRPVNTVFQNYALFPHL 87 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-----cCcCChh-hcceEEEecccccCCCC
Confidence 56788999999999998 9999999999775 345666665532 2222211 1111001121111001
Q ss_pred hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++.+++..+.. ..............++..+|+.+..++.+..|||||+||++|||+++ .+|+++||||||++||+
T Consensus 88 t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~----~~p~llllDEP~~gLD~ 163 (232)
T cd03300 88 TVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALV----NEPKVLLLDEPLGALDL 163 (232)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCH
Confidence 23333211110 00011111224456777889988889999999999999999998864 78899999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeE
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNS 254 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s 254 (264)
.++..+.++|+++.+ +.++|++||+... .+.||+++- +++|..
T Consensus 164 ~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~--l~~G~~ 209 (232)
T cd03300 164 KLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAV--MNKGKI 209 (232)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE--EECCEE
Confidence 999999999998864 6799999999986 478999988 568765
No 237
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.94 E-value=6e-27 Score=197.59 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=108.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+.+++||++++||+++ ||||||+++++++ +.+|.+.+.+.. +..+... .++ +.+++
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~---~~~-------~~i~~ 80 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGAD-----ISQWDPN---ELG-------DHVGY 80 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEE-----cccCCHH---HHH-------hheEE
Confidence 46778999999999997 9999999999775 345666665532 3332211 122 23455
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
+||... +... ...+.+ |||||+||++|||+++ .+|+++||||||++||+.+
T Consensus 81 ~~q~~~------~~~~---tv~~~l----------------LS~G~~qrv~la~al~----~~p~~lllDEPt~~LD~~~ 131 (173)
T cd03246 81 LPQDDE------LFSG---SIAENI----------------LSGGQRQRLGLARALY----GNPRILVLDEPNSHLDVEG 131 (173)
T ss_pred ECCCCc------cccC---cHHHHC----------------cCHHHHHHHHHHHHHh----cCCCEEEEECCccccCHHH
Confidence 555310 0000 111111 9999999999998864 7899999999999999999
Q ss_pred HHHHHHHHHHhhc-CCeEEEEEeCcchHhhccceeEEEeeCCe
Q psy17516 212 TQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIFRTKFVDGN 253 (264)
Q Consensus 212 ~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~v~~~~g~ 253 (264)
+..+.++|+++.+ +.++|+|||+...++.||+++- |.+|.
T Consensus 132 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~--l~~G~ 172 (173)
T cd03246 132 ERALNQAIAALKAAGATRIVIAHRPETLASADRILV--LEDGR 172 (173)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE--EECCC
Confidence 9999999998864 6789999999998899999988 55764
No 238
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=1e-26 Score=225.77 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=125.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc---cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM---TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~---~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
.+.+++||+|++||+++ ||||||+++++++. ..|++.+.++. +..... ...++.....+.+.+
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~-----~~~~~~--~~~~~~~i~~v~q~~~ 346 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKP-----VDIRNP--AQAIRAGIAMVPEDRK 346 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEE-----CCCCCH--HHHHhCCCEEcCcchh
Confidence 36778999999999998 99999999998763 35666665532 221111 111111111111111
Q ss_pred -------hhHHHhhcCCCcCCC----CCC--chhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 -------GSIFSLLLPGSQAKL----SPP--AGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 -------~~vf~~L~~g~~~~l----~~~--~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
-++.+++..+..... ... .....+..++..+++.+ ..++++.+||||||||++||++++ .+|
T Consensus 347 ~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~----~~p 422 (500)
T TIGR02633 347 RHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL----TNP 422 (500)
T ss_pred hCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh----hCC
Confidence 023333322110000 001 11234567778889964 578999999999999999998875 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- +.+|..
T Consensus 423 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~--l~~G~i 481 (500)
T TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLV--IGEGKL 481 (500)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999998864 67899999998866 57999987 668764
No 239
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.5e-27 Score=203.99 Aligned_cols=197 Identities=20% Similarity=0.234 Sum_probs=145.8
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~ 99 (264)
+.+..+++.+.|+ ++..-++|||+|++||+++ +||||.++++.++ +++|.++.++
T Consensus 3 ~~L~a~~l~K~y~-----------------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~ 65 (243)
T COG1137 3 STLVAENLAKSYK-----------------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65 (243)
T ss_pred cEEEehhhhHhhC-----------------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECC
Confidence 3456688999998 3455668999999999998 9999999988665 4577777777
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh-----hHHHhhcCCCcCCC-CCC--chhhHHHhHHHHcCCCcccccccC
Q psy17516 100 RAKLLKVIEELDEKKKIALREAWLKVNTDFG-----SIFSLLLPGSQAKL-SPP--AGKDILDGLEVNVAFGGLWKESLG 171 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~-----~vf~~L~~g~~~~l-~~~--~~~~~~~~l~~~v~l~~~~~~~~~ 171 (264)
.+ |..+.-.++.++--.| .+|.-+ +|.+++..-..... ... ..+..++.++..+++.+.++++..
T Consensus 66 ~d-----iT~lPm~~RArlGigY--LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~ 138 (243)
T COG1137 66 ED-----ITKLPMHKRARLGIGY--LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY 138 (243)
T ss_pred cc-----cccCChHHHhhcCccc--ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc
Confidence 54 8877766655543222 222211 23333221110000 111 112346788889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeC-cchHhhccceeEEEe
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLK-EGMFSNANVIFRTKF 249 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~-~~~~~~ad~l~~v~~ 249 (264)
+||||||+|+.|||++| .+|.|+|||||+||.||..+..|.++++.+.. +-.++|.-|| .+++..|||.|-+
T Consensus 139 sLSGGERRR~EIARaLa----~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi-- 212 (243)
T COG1137 139 SLSGGERRRVEIARALA----ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYII-- 212 (243)
T ss_pred ccccchHHHHHHHHHHh----cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEE--
Confidence 99999999999999886 58899999999999999999999999999875 6667788888 6689999999994
Q ss_pred eCCeE
Q psy17516 250 VDGNS 254 (264)
Q Consensus 250 ~~g~s 254 (264)
.+|..
T Consensus 213 ~~G~v 217 (243)
T COG1137 213 SDGKV 217 (243)
T ss_pred ecCeE
Confidence 47765
No 240
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=5.5e-27 Score=227.19 Aligned_cols=184 Identities=18% Similarity=0.118 Sum_probs=124.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhcc---chhHHHhhHHHHHHHHHh-hhHH-HHHHHHHHHHHhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT---KKSIVESDRAKLLKVIEE-LDEK-KKIALREAWLKVNTD 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~---~~~~~~~~~~~l~~~I~~-l~~~-~~~~~~~~~~~v~~~ 128 (264)
.+++++||+|++||+++ ||||||+++++++.. .|++.+.+.. +.. .... .+..+...+|.....
T Consensus 274 ~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR-----RGSGETIWDIKKHIGYVSSSLHLD 348 (490)
T ss_pred eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc-----CCCCCCHHHHHhhceEECHHHHhh
Confidence 46778999999999998 999999999977532 5666665532 110 0000 011111011221111
Q ss_pred h---hhHHHhhcCCCcC--CC-C--CCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 129 F---GSIFSLLLPGSQA--KL-S--PPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 129 f---~~vf~~L~~g~~~--~l-~--~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
+ ..+.+.++.+... .. . .....+.+..++..+++.+ ..++++.+|||||||||+||++++ .+|+++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~----~~p~lll 424 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV----KHPTLLI 424 (490)
T ss_pred cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh----cCCCEEE
Confidence 1 1222222211100 00 0 1111234567777899987 789999999999999999998864 7899999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc-C-CeEEEEEeCcchHh--hccceeEEEeeCCeE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK-T-SQFIIVSLKEGMFS--NANVIFRTKFVDGNS 254 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~-~-~q~IiVTH~~~~~~--~ad~l~~v~~~~g~s 254 (264)
|||||++||+.++..+.++|+++++ + +++|+|||+...+. .||+++- |.+|..
T Consensus 425 LDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~--l~~G~i 481 (490)
T PRK10938 425 LDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEF--VPDGDI 481 (490)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEE--ecCCce
Confidence 9999999999999999999999864 3 46899999998875 4898887 678853
No 241
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.94 E-value=2.2e-26 Score=226.51 Aligned_cols=178 Identities=23% Similarity=0.245 Sum_probs=125.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+.+++++||++++||.++ ||||||+++++++ +.+|.+.+++.+ +..++.. .+++.+..++|+.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~-----i~~~~~~---~~~~~i~~~~Q~~~ 424 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD-----LRQLDPA---ELRARMALVPQDPV 424 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE-----HHhcCHH---HHHHhceEEccCCc
Confidence 357789999999999997 9999999998765 345666666643 5555432 2332222233322
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-----------cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-----------GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-----------~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+++.+++..+... ..++.....+..+++. .........||||||||++|||++ +++|
T Consensus 425 lf~~Ti~~Ni~~~~~~-----~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal----~~~~ 495 (576)
T TIGR02204 425 LFAASVMENIRYGRPD-----ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI----LKDA 495 (576)
T ss_pred cccccHHHHHhcCCCC-----CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH----HhCC
Confidence 3555555443211 1112222223333322 122334567999999999999886 5789
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|++++|||||+||+.+...+.+.|++..++.++|+||||...+..||+++. +++|...
T Consensus 496 ~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~--l~~g~~~ 553 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVV--MDQGRIV 553 (576)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999999999998778899999999999999999998 6788754
No 242
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1.7e-26 Score=196.46 Aligned_cols=147 Identities=19% Similarity=0.199 Sum_probs=110.4
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
...++++||++++|++++ |||||||+++. ++.|++.+.+. + . .+. +..+.++
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il--~~~G~v~~~~~------~---~-----~~~------~~~~~~~ 65 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL--YASGKARLISF------L---P-----KFS------RNKLIFI 65 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh--hcCCcEEECCc------c---c-----ccc------cccEEEE
Confidence 345678999999999997 99999999874 23344332221 0 0 000 0112223
Q ss_pred HHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCC--CCEEEeecCCCCCCH
Q psy17516 133 FSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKP--APLYILDEVDAALDL 209 (264)
Q Consensus 133 f~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~--~~illlDEPta~LD~ 209 (264)
++ ..++..+++.+ ..++++.+||||||||++||++++ .+ |+++|+||||++||+
T Consensus 66 ~q-------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~----~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 66 DQ-------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELF----SEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred hH-------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHh----hCCCCCEEEEeCCcccCCH
Confidence 32 23445678765 378889999999999999998875 57 899999999999999
Q ss_pred HHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccceeEEEeeCC
Q psy17516 210 SHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIFRTKFVDG 252 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~v~~~~g 252 (264)
.+...+.+.|+++.+ +.++|+|||+...+..||+++- |.+|
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~--l~~g 164 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIID--FGPG 164 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE--ECCC
Confidence 999999999998764 7899999999998899999988 5453
No 243
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.5e-27 Score=209.64 Aligned_cols=184 Identities=17% Similarity=0.110 Sum_probs=124.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKV 125 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v 125 (264)
+.+++++||++++||+++ ||||||+++++++. ..|++.+.+.. +.... .....++.....+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~-----~~~~~-~~~~~~~~~i~~v 106 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGID-----INRKE-INVYEMRKHIGMV 106 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEE-----ccccc-CChHHHhcceEEE
Confidence 346778999999999998 99999999997763 36666666542 21100 0011111111111
Q ss_pred hhh---h-hhHHHhhcCCCc-CCCCCC-chhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 126 NTD---F-GSIFSLLLPGSQ-AKLSPP-AGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 126 ~~~---f-~~vf~~L~~g~~-~~l~~~-~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
.+. | .++++++..+.. ...... .....+..++..+++. +..++++.+|||||+||++|||+++ .+|
T Consensus 107 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~----~~p 182 (267)
T PRK14237 107 FQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA----VKP 182 (267)
T ss_pred ecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh----cCC
Confidence 111 1 244444332211 001011 1122344556667764 3567889999999999999998864 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+++||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++- +++|..
T Consensus 183 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~--l~~G~i 240 (267)
T PRK14237 183 DILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAF--FYLGDL 240 (267)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEE--EECCEE
Confidence 9999999999999999999999999987678899999998765 78999988 668865
No 244
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-26 Score=204.07 Aligned_cols=180 Identities=23% Similarity=0.284 Sum_probs=119.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+.+++||++++|++++ ||||||+++++++ +.+|.+.+.+.. +...+.. .++.....+.++
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~-----~~~~~~~---~~~~~i~~~~q~~~~ 86 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQD-----IREVTLD---SLRRAIGVVPQDTVL 86 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEE-----hhhCCHH---HHHhhEEEECCCChh
Confidence 46678999999999998 9999999999776 346666665542 3333211 122111011111
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhH-----HHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDI-----LDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~-----~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
| .++.+++..+... ......... +......+ ++....++++.+||||||||++||+++ +.+|+++||
T Consensus 87 ~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL----~~~p~llll 161 (236)
T cd03253 87 FNDTIGYNIRYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI----LKNPPILLL 161 (236)
T ss_pred hcchHHHHHhhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH----hcCCCEEEE
Confidence 1 2344443222110 000000000 11111122 334445667899999999999999876 478999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||||++||+.+...+.++|.++.++.++|+|||+......||+++- +.+|..
T Consensus 162 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~--l~~g~i 213 (236)
T cd03253 162 DEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIV--LKDGRI 213 (236)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999988767789999999998888999988 668764
No 245
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.7e-26 Score=196.48 Aligned_cols=188 Identities=19% Similarity=0.213 Sum_probs=138.3
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhh-h-ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHH-HHhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISME-A-MTKKSIVESDRAKLLKVIEELDEKKKIALREAW-LKVNTDF 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~-l-~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~-~~v~~~f 129 (264)
+-+++++||++.+||+++ +||||||+.+.+ + ++.|++.+++.. +......+..+-|... |+..-.|
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~-----l~~~~~~~lA~~raVlpQ~s~laF 88 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVP-----LNSWPPEELARHRAVLPQNSSLAF 88 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcC-----hhhCCHHHHHHHhhhcccCccccc
Confidence 456778999999999998 999999998855 3 456667777653 5555544444433222 3333334
Q ss_pred h-hHHHhhcCCCcCCCC---CCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCC----CEEEee
Q psy17516 130 G-SIFSLLLPGSQAKLS---PPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPA----PLYILD 201 (264)
Q Consensus 130 ~-~vf~~L~~g~~~~l~---~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~----~illlD 201 (264)
. +|.+.+-.|....-. ..+...+....+..+++.+...+...+|||||+|||.+||.+|. +.+| ..++||
T Consensus 89 pFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ--l~~~v~~~r~L~LD 166 (259)
T COG4559 89 PFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ--LWPPVPSGRWLFLD 166 (259)
T ss_pred ceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH--ccCCCCCCceEEec
Confidence 3 233333334332211 11223456778889999999999999999999999999999985 3333 399999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 202 EVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
||||+||..++..++++.++++. +..+++|=||.+.+ .+||+++- |.+|...
T Consensus 167 EPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivl--l~~Grv~ 220 (259)
T COG4559 167 EPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVL--LHQGRVI 220 (259)
T ss_pred CCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeee--eeCCeEe
Confidence 99999999999999999999985 67899999999976 78999998 7788753
No 246
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=1.9e-26 Score=208.76 Aligned_cols=176 Identities=20% Similarity=0.211 Sum_probs=126.6
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh-ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA-MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
+.+++++||+|++||+++ ||||||++++.++ +..|.+++++.. +..++... ++.....+.++.
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~-----i~~~~~~~---lr~~i~~v~q~~~l 88 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVS-----WNSVPLQK---WRKAFGVIPQKVFI 88 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEE-----hhhCCHHH---HhhhEEEECCCccc
Confidence 346788999999999998 9999999998665 345566666542 33333211 221111112221
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCC-----------CCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGE-----------LSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~-----------LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+++.+++.+.. .. ..+.+..++..+|+.+..++.|.. |||||+||++|||++ +.+|+
T Consensus 89 f~~tv~~nl~~~~-----~~-~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal----l~~p~ 158 (275)
T cd03289 89 FSGTFRKNLDPYG-----KW-SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV----LSKAK 158 (275)
T ss_pred chhhHHHHhhhcc-----CC-CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH----hcCCC
Confidence 23444443211 01 122344455678888877787776 999999999999886 47889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++|+||||++||+.+...+.+.|++..++.++|+|||+..++..||+++- |++|..
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~v--l~~G~i 214 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLV--IEENKV 214 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE--ecCCeE
Confidence 99999999999999999999999987777899999999999888999988 668754
No 247
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=1.9e-26 Score=205.73 Aligned_cols=182 Identities=17% Similarity=0.192 Sum_probs=122.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~ 127 (264)
.+++++||++++||+++ ||||||+++++++. +.|++.+.+.. +...+ ..+..+.-.+|....
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~-----i~~~~-~~~~~i~~v~q~~~~ 90 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKP-----VAPCA-LRGRKIATIMQNPRS 90 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCee-----ccccc-cccceEEEEecCCcc
Confidence 45678999999999997 99999999998763 44666665542 21110 000000001111100
Q ss_pred hhh---hHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc---ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee
Q psy17516 128 DFG---SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG---LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201 (264)
Q Consensus 128 ~f~---~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~---~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD 201 (264)
.|. ++++.+...... .......+.+..++..+++.+ ..++.+.+|||||+||++|||+++ .+|+++|||
T Consensus 91 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~----~~p~lLlLD 165 (254)
T PRK10418 91 AFNPLHTMHTHARETCLA-LGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL----CEAPFIIAD 165 (254)
T ss_pred ccCccccHHHHHHHHHHH-cCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh----cCCCEEEEe
Confidence 010 111111000000 001112234566777889876 468899999999999999998864 788999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 202 EVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- +++|..
T Consensus 166 EPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~--l~~G~i 219 (254)
T PRK10418 166 EPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAV--MSHGRI 219 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999998754 67899999998876 57999988 668864
No 248
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=1.1e-26 Score=203.53 Aligned_cols=179 Identities=20% Similarity=0.225 Sum_probs=122.3
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc-----cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-----TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT 127 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-----~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~ 127 (264)
+.+.+++||++++||+++ ||||||+++++++. ..|.+.+.+.. +.. . .++.....+.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~-----~~~---~---~~~~~i~~~~q 88 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP-----RKP---D---QFQKCVAYVRQ 88 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEE-----CCh---H---HhcccEEEeCC
Confidence 456778999999999997 99999999997653 45666665532 211 0 11111100111
Q ss_pred h---h-h-hHHHhhcCCCcCCC---CCCc-hhhHHHh-HHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 128 D---F-G-SIFSLLLPGSQAKL---SPPA-GKDILDG-LEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 128 ~---f-~-~vf~~L~~g~~~~l---~~~~-~~~~~~~-l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
. | + ++++++..+..... .... ....... ++..+++.+..++.+.+|||||+||++|||+++ .+|++
T Consensus 89 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~----~~p~i 164 (226)
T cd03234 89 DDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL----WDPKV 164 (226)
T ss_pred CCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH----hCCCE
Confidence 1 1 1 33333211100000 0011 1112333 566778887788899999999999999998865 68899
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCc--chHhhccceeEEEeeCCeE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKE--GMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~--~~~~~ad~l~~v~~~~g~s 254 (264)
+|+||||++||+.++..+.++|+++.+ +.++|++||+. .+.+.||+++- |.+|..
T Consensus 165 lllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~--l~~G~i 222 (226)
T cd03234 165 LILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILL--LSSGEI 222 (226)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEE--EeCCEE
Confidence 999999999999999999999998764 67899999997 56789999988 667754
No 249
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=2.1e-26 Score=199.19 Aligned_cols=166 Identities=22% Similarity=0.259 Sum_probs=116.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+.+++||++++|++++ ||||||+++++++ +.+|.+.+.+.. +...+.. .++ ..+++
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~---~~~-------~~i~~ 86 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID-----ISTIPLE---DLR-------SSLTI 86 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE-----hHHCCHH---HHH-------hhEEE
Confidence 46778999999999998 9999999999775 345666665542 3222211 112 12333
Q ss_pred HHHh--hcCCCcCC----CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 132 IFSL--LLPGSQAK----LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 132 vf~~--L~~g~~~~----l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
+||. ++++ +.. .......+.+.. .++ .++++.+|||||+||++|||+++ .+|+++||||||+
T Consensus 87 v~q~~~~~~~-tv~~~l~~~~~~~~~~~~~---~l~----~~~~~~~LS~G~~qrv~laral~----~~p~llllDEP~~ 154 (207)
T cd03369 87 IPQDPTLFSG-TIRSNLDPFDEYSDEEIYG---ALR----VSEGGLNLSQGQRQLLCLARALL----KRPRVLVLDEATA 154 (207)
T ss_pred EecCCcccCc-cHHHHhcccCCCCHHHHHH---Hhh----ccCCCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCcc
Confidence 3332 1211 110 000001111111 222 35678999999999999998874 6889999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
+||+.....+.++|+++.++.++|+|||+...+..||+++- |.+|..
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~--l~~g~i 201 (207)
T cd03369 155 SIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILV--MDAGEV 201 (207)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEE--EECCEE
Confidence 99999999999999998667899999999998878999988 668764
No 250
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-26 Score=210.24 Aligned_cols=183 Identities=17% Similarity=0.147 Sum_probs=123.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++||+++ ||||||++++.++. ..|.+.+.+.. +..... ....++..+..+.
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~-----i~~~~~-~~~~~~~~i~~v~ 126 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED-----IYGKFT-DEVLLRKKIGMVF 126 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEE-----hhhccc-chHHhhhcEEEEC
Confidence 35678999999999997 99999999998752 55666665532 221110 0011221111111
Q ss_pred hh---h-hhHHHhhcCCCc-CCCCCC-chhhHHHhHHHHcCC----CcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQ-AKLSPP-AGKDILDGLEVNVAF----GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~-~~l~~~-~~~~~~~~l~~~v~l----~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++ | .++++++..+.. ...... ...+.+..++..+++ .+..++++..|||||+||++|||++ +.+|+
T Consensus 127 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL----~~~p~ 202 (286)
T PRK14275 127 QKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL----AVEPE 202 (286)
T ss_pred CCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH----hcCCC
Confidence 11 1 244444322111 011111 112234455556665 3456788999999999999999886 47889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.+...+.++|+++.++.++|+|||+...+ +.||+++- |.+|..
T Consensus 203 lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~--L~~G~i 259 (286)
T PRK14275 203 ILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMF--FYEGVL 259 (286)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999999999987677899999998876 57999988 668765
No 251
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.93 E-value=9.4e-27 Score=200.86 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=114.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+.+++||++++||+++ ||||||+++++++ ++.|.+.+++.. +...+... .. ...+
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~-----~~~~~~~~---~~------~~~i 79 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED-----ITDLPPEE---RA------RLGI 79 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEE-----CCcCCHHH---Hh------hCcE
Confidence 46778999999999998 9999999999876 356666666642 33333211 11 1224
Q ss_pred hhHHHh--hcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 130 GSIFSL--LLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 130 ~~vf~~--L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
+++++. ++++.+ ..... ...+.+|||||+||++|||+++ .+|+++||||||++|
T Consensus 80 ~~v~q~~~~~~~~~-----------~~~~l---------~~~~~~LS~G~~qrv~laral~----~~p~illlDEPt~~L 135 (200)
T cd03217 80 FLAFQYPPEIPGVK-----------NADFL---------RYVNEGFSGGEKKRNEILQLLL----LEPDLAILDEPDSGL 135 (200)
T ss_pred EEeecChhhccCcc-----------HHHHH---------hhccccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccC
Confidence 455553 222211 11111 2334689999999999998864 789999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh--hccceeEEEeeCCeEE
Q psy17516 208 DLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS--NANVIFRTKFVDGNSN 255 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~--~ad~l~~v~~~~g~s~ 255 (264)
|+.+...+.++|+++.+ +.++|++||+...++ .||+++. |++|...
T Consensus 136 D~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~--l~~G~i~ 184 (200)
T cd03217 136 DIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHV--LYDGRIV 184 (200)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEE--EECCEEE
Confidence 99999999999999865 678999999999887 6999988 5687653
No 252
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.93 E-value=1.5e-26 Score=225.89 Aligned_cols=170 Identities=24% Similarity=0.222 Sum_probs=120.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||++++|+.++ ||||||+++++++ +++|.+.+++.+ +.+++. ..+++.+..+.|+.
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~-----i~~~~~---~~lr~~i~~v~Q~~~l 407 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVP-----LADADA---DSWRDQIAWVPQHPFL 407 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe-----hhhCCH---HHHHhheEEEcCCCcc
Confidence 56789999999999998 9999999999764 345667776643 555553 23443222222221
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+++.+++..+... ..++.....+..+++.+ ........||||||||++|||++ +++|+
T Consensus 408 f~~ti~~Ni~~~~~~-----~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal----~~~~~ 478 (529)
T TIGR02857 408 FAGTIAENIRLARPD-----ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF----LRDAP 478 (529)
T ss_pred cCcCHHHHHhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH----hcCCC
Confidence 3455554433211 11122223333344322 22234578999999999999886 57899
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
+++|||||++||+.+...+.+.|.+..++.|+|+||||..+++.||+++-
T Consensus 479 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 479 LLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEe
Confidence 99999999999999999999999998778899999999999999999874
No 253
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-26 Score=224.46 Aligned_cols=182 Identities=19% Similarity=0.174 Sum_probs=126.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+.+++||+|++||+++ ||||||+++++++. ..|.+.+.++. +...... ...+..+..+.+.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~-----~~~~~~~--~~~~~~i~~~~q~~~~ 339 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKP-----IDIRSPR--DAIRAGIMLCPEDRKA 339 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEE-----CCCCCHH--HHHhCCCEEcCcCHhh
Confidence 36789999999999998 99999999997753 45566555532 2211111 1111111111111
Q ss_pred ---h--hhHHHhhcCCCcCC------C-CCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 ---F--GSIFSLLLPGSQAK------L-SPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 ---f--~~vf~~L~~g~~~~------l-~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| .++++++..+.... + ......+.+..++..+++. +..++++.+||||||||++||+++ +.+|
T Consensus 340 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al----~~~p 415 (501)
T PRK11288 340 EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL----SEDM 415 (501)
T ss_pred CCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH----ccCC
Confidence 1 24555543221110 0 0111123456677888994 678999999999999999999876 4789
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+++||||||++||+.++..+.++|+++.+ +.++|+||||...+ +.||+++- |.+|..
T Consensus 416 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~--l~~g~i 474 (501)
T PRK11288 416 KVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVV--MREGRI 474 (501)
T ss_pred CEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEE--EECCEE
Confidence 99999999999999999999999998865 67899999998876 68999998 668753
No 254
>KOG0057|consensus
Probab=99.93 E-value=1.9e-26 Score=220.64 Aligned_cols=182 Identities=21% Similarity=0.218 Sum_probs=136.6
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhh-hhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFIS-MEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l-~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
++.+++++||+|++||-+| |||||+++.+ .+...+|+++++|.+ |++++ .+.+|.+...|+|.-
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~d-----ik~~~---~~SlR~~Ig~VPQd~~ 435 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQD-----IKEVS---LESLRQSIGVVPQDSV 435 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCee-----HhhhC---hHHhhhheeEeCCccc
Confidence 4558889999999999988 9999999977 456678889999874 55554 566776666666542
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-------cc----cccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-------GL----WKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-------~~----~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
.+|+.++--|. . ....+.+-++..+.++. +. .......|||||||||+|||+| +++|
T Consensus 436 LFndTIl~NI~YGn-~----sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~----lKda 506 (591)
T KOG0057|consen 436 LFNDTILYNIKYGN-P----SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF----LKDA 506 (591)
T ss_pred ccchhHHHHhhcCC-C----CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH----hcCC
Confidence 24555544332 1 11111222223334432 22 2356678999999999999875 6999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEEEEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTR 258 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~i~~ 258 (264)
|++++|||||+||..+..++++++.+...+.|+|+|-||..+.+.||+++. +++|..+..+
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~--l~nG~v~e~g 567 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIV--LDNGTVKEYG 567 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEE--EECCeeEEec
Confidence 999999999999999999999999997678899999999999999999999 7788766543
No 255
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=1.9e-26 Score=224.70 Aligned_cols=182 Identities=16% Similarity=0.198 Sum_probs=126.2
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh----
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD---- 128 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---- 128 (264)
.++++||+|++|++++ ||||||++++.++ +..|.+.+.+.. +...+... .++..+..+.+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~-----i~~~~~~~--~~~~~i~~v~q~~~~~ 350 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKE-----INALSTAQ--RLARGLVYLPEDRQSS 350 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEE-----CCCCCHHH--HHhCCcEECCCChhhC
Confidence 4789999999999997 9999999999775 345666555532 32222111 111111111111
Q ss_pred --h--hhHHHhhcCC--CcCCC--CCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 129 --F--GSIFSLLLPG--SQAKL--SPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 129 --f--~~vf~~L~~g--~~~~l--~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
| -++++++... ..... ........+..++..+++. +..++++.+||||||||++||++++ .+|+++|
T Consensus 351 ~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~----~~p~lLl 426 (510)
T PRK15439 351 GLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLE----ASPQLLI 426 (510)
T ss_pred CccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHh----hCCCEEE
Confidence 1 1233332111 00000 1111123456777788997 7789999999999999999998874 6889999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|||||++||+.++..+.++|+++++ +.++|+|||+...+ +.||+++- +.+|...
T Consensus 427 LDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~--l~~G~i~ 482 (510)
T PRK15439 427 VDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLV--MHQGEIS 482 (510)
T ss_pred ECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999999864 67899999998876 57999988 6688543
No 256
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-26 Score=206.91 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=118.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++||+++ ||||||+++++++. ..|.+.+.+.. +...+. ....++.....+.
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~-----i~~~~~-~~~~~~~~i~~v~ 97 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN-----LYAPDV-DPVEVRRRIGMVF 97 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE-----cccccc-ChHHHhhhEEEEc
Confidence 45678999999999997 99999999997652 35666665532 211100 0011121111111
Q ss_pred hh---h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 127 TD---F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
++ | .++++++..+...........+....++..+++. ...++.+.+|||||+||++|||+++ .+|+++
T Consensus 98 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~----~~p~ll 173 (264)
T PRK14243 98 QKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA----VQPEVI 173 (264)
T ss_pred cCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh----cCCCEE
Confidence 11 1 2445544322110000111112233344455553 3467789999999999999998864 688999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v 247 (264)
||||||++||+.++..+.++|+++.++.++|+|||+...+ +.||+++-+
T Consensus 174 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l 223 (264)
T PRK14243 174 LMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFF 223 (264)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999999999987778999999998764 789999873
No 257
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-26 Score=207.58 Aligned_cols=181 Identities=17% Similarity=0.194 Sum_probs=121.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh--hh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT--DF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~--~f 129 (264)
.+++++||++++||+++ ||||||+++++++ +..|.+.+.+.. +... ..+..+.-.++.... .+
T Consensus 21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~--~~~~~i~~v~q~~~~~~~~ 93 (272)
T PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP-----TRQA--LQKNLVAYVPQSEEVDWSF 93 (272)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----hHHh--hccceEEEeccccccccCC
Confidence 45678999999999997 9999999999776 345666666542 2110 000000001111100 01
Q ss_pred h-hHHHhhcCCCcC--CC-C-C-CchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 130 G-SIFSLLLPGSQA--KL-S-P-PAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 130 ~-~vf~~L~~g~~~--~l-~-~-~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
. .+.+.+..+... .. . . .........++..+++.+..++++.+|||||+||++|||+++ .+|+++|+|||
T Consensus 94 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~----~~p~llllDEP 169 (272)
T PRK15056 94 PVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA----QQGQVILLDEP 169 (272)
T ss_pred CcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCC
Confidence 1 122222211100 00 0 1 111234556677889988889999999999999999998864 68899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- + +|..
T Consensus 170 t~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~--~-~G~i 219 (272)
T PRK15056 170 FTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVM--V-KGTV 219 (272)
T ss_pred CccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE--E-CCEE
Confidence 999999999999999998864 67899999998765 78998753 4 6653
No 258
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.93 E-value=5.1e-26 Score=224.07 Aligned_cols=178 Identities=25% Similarity=0.296 Sum_probs=127.0
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+..++++||++++||.++ ||||||++.+..+. .+|+++++|.+ |..++. ..+|+....|.|+.
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d-----I~~i~~---~~lr~~I~~V~Qd~~ 413 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID-----IRDISL---DSLRKRIGIVSQDPL 413 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe-----hhhcCH---HHHHHhccEEcccce
Confidence 467789999999999997 99999999886653 35777775543 666653 34444333333332
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHH-----HhHHHHcCCCcccc----cccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDIL-----DGLEVNVAFGGLWK----ESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~-----~~l~~~v~l~~~~~----~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
++|.+++..|..- ...++..+.+ .+... .+|+..+ .....||||||||+|||||+ +++||+
T Consensus 414 LF~~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge~G~~LSgGQrQrlaiARal----l~~~~I 486 (567)
T COG1132 414 LFSGTIRENIALGRPD-ATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGVNLSGGQRQRLAIARAL----LRNPPI 486 (567)
T ss_pred eecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHH--hCcccccceecCCCccCCHHHHHHHHHHHHH----hcCCCE
Confidence 4666666655321 0111111111 11111 2332233 34568999999999999886 578999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCe
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGN 253 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~ 253 (264)
++||||||+||+.+...+.+.+.++.++.|+|+|+||..++..||+++- |++|.
T Consensus 487 LILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiV--l~~G~ 540 (567)
T COG1132 487 LILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIV--LDNGR 540 (567)
T ss_pred EEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEE--EECCE
Confidence 9999999999999999999999987777788899999999999999998 77987
No 259
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.8e-27 Score=208.35 Aligned_cols=200 Identities=16% Similarity=0.171 Sum_probs=131.7
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~ 101 (264)
.+++++.++|+ .+.+.+++||++++||+++ ||||||+++++++. ..|++.+.|.-
T Consensus 11 i~~~~~~~~~~-----------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~ 73 (257)
T PRK14246 11 FNISRLYLYIN-----------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKV 73 (257)
T ss_pred eeeeeEEEecC-----------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEE
Confidence 45566677775 2456788999999999998 99999999997763 34443333310
Q ss_pred HHH-HHHHhhhHHHHHHHHH----HHHHhhhhhh-hHHHhhcCCCcC-CCCCC-chhhHHHhHHHHcCCC----cccccc
Q psy17516 102 KLL-KVIEELDEKKKIALRE----AWLKVNTDFG-SIFSLLLPGSQA-KLSPP-AGKDILDGLEVNVAFG----GLWKES 169 (264)
Q Consensus 102 ~l~-~~I~~l~~~~~~~~~~----~~~~v~~~f~-~vf~~L~~g~~~-~l~~~-~~~~~~~~l~~~v~l~----~~~~~~ 169 (264)
.+. ..+..++.. .++. .++......+ ++++++..+... ..... +....+..++..+++. +..++.
T Consensus 74 ~~~g~~~~~~~~~---~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (257)
T PRK14246 74 LYFGKDIFQIDAI---KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSP 150 (257)
T ss_pred EECCcccccCCHH---HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCC
Confidence 000 012222211 1111 1122111111 444443321110 01111 1112345666677875 356788
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEE
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTK 248 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~ 248 (264)
+..||||||||++|||++ +.+|++++|||||++||..+...+.++|.++.++.++|+|||+...+ ..||+++-
T Consensus 151 ~~~LS~G~~qrl~laral----~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~-- 224 (257)
T PRK14246 151 ASQLSGGQQQRLTIARAL----ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAF-- 224 (257)
T ss_pred cccCCHHHHHHHHHHHHH----HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEE--
Confidence 999999999999999886 47899999999999999999999999999887678999999999877 68999988
Q ss_pred eeCCeEE
Q psy17516 249 FVDGNSN 255 (264)
Q Consensus 249 ~~~g~s~ 255 (264)
|.+|...
T Consensus 225 l~~g~i~ 231 (257)
T PRK14246 225 LYNGELV 231 (257)
T ss_pred EECCEEE
Confidence 5677653
No 260
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.6e-26 Score=205.99 Aligned_cols=178 Identities=16% Similarity=0.051 Sum_probs=120.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+.+++||++++|++++ ||||||+++++++. ..|.+.+.+.+ +...+.. ...++.....+.
T Consensus 22 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~-----i~~~~~~-~~~~~~~i~~v~ 95 (261)
T PRK14263 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQD-----VYGKGVD-PVVVRRYIGMVF 95 (261)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEe-----ccccccc-hHhhhhceEEEe
Confidence 46678999999999998 99999999997753 35666666542 2211100 111221111111
Q ss_pred hh----hhhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 127 TD----FGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG----LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 127 ~~----f~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
++ ..++++++..+................++..+++.. ..++++.+|||||+||++|||+++ .+|+++
T Consensus 96 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~----~~p~ll 171 (261)
T PRK14263 96 QQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA----TEPEVL 171 (261)
T ss_pred cCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH----cCCCEE
Confidence 11 124444443221110001111233455666777643 345778999999999999998864 789999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcch-HhhccceeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM-FSNANVIFRT 247 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~-~~~ad~l~~v 247 (264)
||||||++||+.++..+.++|+++.++.++|+|||+... .+.||+++-+
T Consensus 172 llDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 172 LLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999998767889999999985 4789999873
No 261
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.93 E-value=3.7e-26 Score=230.77 Aligned_cols=175 Identities=18% Similarity=0.206 Sum_probs=121.6
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+..++++||++++||.++ ||||||++++.++ +++|.+.+++.+ +.+++. ..+++.+..+.|+
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~-----i~~~~~---~~lr~~i~~v~Q~~~ 565 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP-----LVQYDH---HYLHRQVALVGQEPV 565 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE-----HHhcCH---HHHHhhceEEecCcc
Confidence 356789999999999998 9999999998664 446677777753 555553 2344333333333
Q ss_pred -h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 -F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 -f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| +++.+++..|... ..++.....+..+++.+ .......+||||||||+||||++ +++|
T Consensus 566 lF~gTIreNI~~g~~~-----~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL----l~~p 636 (711)
T TIGR00958 566 LFSGSVRENIAYGLTD-----TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL----VRKP 636 (711)
T ss_pred ccccCHHHHHhcCCCC-----CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH----hcCC
Confidence 1 3555555443211 11122222333333322 22234568999999999999886 5799
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
+++|||||||+||+.+...+.+ . ...++.|+|+||||..+++.||+++- +++|..
T Consensus 637 ~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~Iiv--L~~G~i 691 (711)
T TIGR00958 637 RVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILV--LKKGSV 691 (711)
T ss_pred CEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999888 2 23357899999999999999999998 678864
No 262
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=2.3e-26 Score=223.54 Aligned_cols=181 Identities=17% Similarity=0.171 Sum_probs=126.2
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh---
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF--- 129 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f--- 129 (264)
..+++||+|.+||+++ ||||||+++++++ ++.|++.+.+.. +...+.. ..++..+..+.+..
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~-----i~~~~~~--~~~~~~i~~v~q~~~~~ 339 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHE-----VVTRSPQ--DGLANGIVYISEDRKRD 339 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----CCCCCHH--HHHHCCCEEecCccccC
Confidence 4789999999999997 9999999999775 345666666532 3222211 11111111112211
Q ss_pred -----hhHHHhhcCCCcCC-------CCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 -----GSIFSLLLPGSQAK-------LSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 -----~~vf~~L~~g~~~~-------l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
-++++++..+.... .........+..++..+++. +..++++.+||||||||++||++++ .+|+
T Consensus 340 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~----~~p~ 415 (501)
T PRK10762 340 GLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM----TRPK 415 (501)
T ss_pred CCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHh----hCCC
Confidence 13444332111000 00111123456777788995 6789999999999999999998864 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- +.+|..
T Consensus 416 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~--l~~G~i 473 (501)
T PRK10762 416 VLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILV--MHEGRI 473 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEE--EECCEE
Confidence 9999999999999999999999999864 67899999998765 67999988 668864
No 263
>KOG0055|consensus
Probab=99.93 E-value=1.6e-26 Score=237.84 Aligned_cols=202 Identities=20% Similarity=0.214 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHH
Q psy17516 26 KKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVE 97 (264)
Q Consensus 26 ~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~ 97 (264)
.+...+++++.++|..+. +-.+++++||.|++|+.++ |||||++.++..+ |+.|++++
T Consensus 347 ~~g~ief~nV~FsYPsRp--------------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRP--------------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI 412 (1228)
T ss_pred cccceEEEEEEecCCCCC--------------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEE
Confidence 445667788888888662 2356778999999999998 9999999988654 56778888
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---h-hhHHHhhcCCCcCCCCCCchhh---HHHhHHHHcCCCc----cc
Q psy17516 98 SDRAKLLKVIEELDEKKKIALREAWLKVNTD---F-GSIFSLLLPGSQAKLSPPAGKD---ILDGLEVNVAFGG----LW 166 (264)
Q Consensus 98 ~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f-~~vf~~L~~g~~~~l~~~~~~~---~~~~l~~~v~l~~----~~ 166 (264)
+|.+ |..++. ..+|....-|.|. | .+|.+++..|... -...+..+ .+........++. .-
T Consensus 413 dG~d-----i~~~~~---~~lr~~iglV~QePvlF~~tI~eNI~~G~~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~v 483 (1228)
T KOG0055|consen 413 DGED-----IRNLNL---KWLRSQIGLVSQEPVLFATTIRENIRYGKPD-ATREEIEEAAKAANAHDFILKLPDGYDTLV 483 (1228)
T ss_pred cCcc-----chhcch---HHHHhhcCeeeechhhhcccHHHHHhcCCCc-ccHHHHHHHHHHccHHHHHHhhHHhhcccc
Confidence 8754 666653 3344322222222 2 2444444433211 00000001 1111111122332 22
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
-....+||||||||+||||++ +++|+++||||||||||+++...|.+.|.+..++.|+|||+||..++..||+++-
T Consensus 484 ge~g~qLSGGQKQRIAIARal----v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v 559 (1228)
T KOG0055|consen 484 GERGVQLSGGQKQRIAIARAL----VRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAV 559 (1228)
T ss_pred cCCCCCCChHHHHHHHHHHHH----HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEE
Confidence 244567999999999999876 5799999999999999999999999999999999999999999999999999998
Q ss_pred EEeeCCeEEE
Q psy17516 247 TKFVDGNSNV 256 (264)
Q Consensus 247 v~~~~g~s~i 256 (264)
|++|..--
T Consensus 560 --~~~G~IvE 567 (1228)
T KOG0055|consen 560 --MEEGKIVE 567 (1228)
T ss_pred --EECCEEEE
Confidence 77987643
No 264
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-26 Score=207.80 Aligned_cols=184 Identities=17% Similarity=0.099 Sum_probs=124.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||++++||+++ ||||||+++++++. ..|.+.+.+.. +..... ....++.....+.
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~-----i~~~~~-~~~~~~~~i~~v~ 112 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN-----IYDKKV-DVAELRRRVGMVF 112 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE-----Cccccc-CHHHHhccEEEEe
Confidence 45678999999999998 99999999998762 46666666542 221100 0011111111111
Q ss_pred hh---h-hhHHHhhcCCCc-CCCCCC-chhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQ-AKLSPP-AGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~-~~l~~~-~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+. | .++++++..+.. ...... ........+...+++. +..++.+.+|||||+||++|||+++ .+|+
T Consensus 113 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~----~~p~ 188 (272)
T PRK14236 113 QRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA----IEPE 188 (272)
T ss_pred cCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH----CCCC
Confidence 11 1 244444432211 111111 1112344555566764 3567889999999999999998864 7899
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.++..+.++|++++++.++|+|||+...+ +.||+++- |.+|...
T Consensus 189 lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~--l~~G~i~ 246 (272)
T PRK14236 189 VLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAF--MYMGKLV 246 (272)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEE--EECCEEE
Confidence 999999999999999999999999987778899999999875 67999988 6688653
No 265
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=3.1e-26 Score=191.88 Aligned_cols=137 Identities=23% Similarity=0.239 Sum_probs=103.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||++++||+++ ||||||+++++++. ..|.+.+.+.. +...+.. ... .+.+++
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~-----~~~~~~~--~~~-------~~~i~~ 79 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE-----VSFASPR--DAR-------RAGIAM 79 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-----CCcCCHH--HHH-------hcCeEE
Confidence 46678999999999997 99999999997753 35555554431 2221110 000 112233
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
+|+ |||||+||++|||++ +.+|+++|+||||++||+.+
T Consensus 80 ~~q--------------------------------------LS~G~~qrl~laral----~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 80 VYQ--------------------------------------LSVGERQMVEIARAL----ARNARLLILDEPTAALTPAE 117 (163)
T ss_pred EEe--------------------------------------cCHHHHHHHHHHHHH----hcCCCEEEEECCCcCCCHHH
Confidence 322 999999999999886 47899999999999999999
Q ss_pred HHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 212 TQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 212 ~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+..+.++|+++.+ +.++|++||+...+ +.||+++- +++|..
T Consensus 118 ~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~--l~~g~i 160 (163)
T cd03216 118 VERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTV--LRDGRV 160 (163)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999998864 67899999998855 67999998 668754
No 266
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.93 E-value=3.7e-26 Score=224.33 Aligned_cols=174 Identities=17% Similarity=0.207 Sum_probs=122.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..++++||++++|+.++ ||||||+++++++ +++|.+.+++.+ +.+++. ..++ +++++
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-----~~~~~~---~~~~-------~~i~~ 401 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP-----VTAEQP---EDYR-------KLFSA 401 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-----CCCCCH---HHHh-------hheEE
Confidence 46789999999999998 9999999999764 456677776642 444432 2233 23333
Q ss_pred HHHh--hcCCCcCCCC-CCchhhHHHhHHHHcCCCcccccc-----cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 132 IFSL--LLPGSQAKLS-PPAGKDILDGLEVNVAFGGLWKES-----LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 132 vf~~--L~~g~~~~l~-~~~~~~~~~~l~~~v~l~~~~~~~-----~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
++|. +|++ +...+ ....++....+...+++....... ...||||||||++|||++ +++|+++|||||
T Consensus 402 v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal----~~~~~ililDE~ 476 (547)
T PRK10522 402 VFTDFHLFDQ-LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL----AEERDILLLDEW 476 (547)
T ss_pred EecChhHHHH-hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH----hcCCCEEEEECC
Confidence 3332 2222 11101 111122344455566665433221 458999999999999886 579999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 204 DAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|++||+.+...+.+.+.+.. .+.|+|+||||..++..||+++- +++|...
T Consensus 477 ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~--l~~G~i~ 528 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLE--MRNGQLS 528 (547)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEE--EECCEEE
Confidence 99999999999999887543 36899999999999999999988 6788654
No 267
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=5.6e-26 Score=224.10 Aligned_cols=178 Identities=19% Similarity=0.198 Sum_probs=125.0
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+..++++||++++|+.++ ||||||+++++++ |++|++.+++.+ +..++. ..++.....+.++
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~-----~~~~~~---~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP-----LTKLQL---DSWRSRLAVVSQTPF 399 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEE-----HhhCCH---HHHHhheEEEccCCe
Confidence 357889999999999997 9999999998764 456677776642 444442 2333322222222
Q ss_pred -h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC-------C----cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 -F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF-------G----GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 -f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l-------~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| +++.+++..+... . .++.....+..+++ + .........||||||||++|||++ +++|
T Consensus 400 lf~~ti~~Ni~~~~~~----~-~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal----l~~~ 470 (569)
T PRK10789 400 LFSDTVANNIALGRPD----A-TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL----LLNA 470 (569)
T ss_pred eccccHHHHHhcCCCC----C-CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH----hcCC
Confidence 1 3455555433210 1 11112222222222 2 223345678999999999999886 5799
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
+++||||||++||+.+...+.+.|+++.++.|+|+||||..+++.||+++- |++|...
T Consensus 471 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~--l~~G~i~ 528 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILV--MQHGHIA 528 (569)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEE--EeCCEEE
Confidence 999999999999999999999999988778899999999999999999988 6688653
No 268
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.4e-26 Score=201.91 Aligned_cols=181 Identities=18% Similarity=0.149 Sum_probs=123.5
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--h
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF--G 130 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f--~ 130 (264)
.++++||++++||+++ ||||||+++++++ ++.|++.+.+.. +...... +....-.++... -| .
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~-----~~~~~~~-~~~i~~~~q~~~-~~~~~ 86 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKD-----ITNLPPE-KRDISYVPQNYA-LFPHM 86 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE-----cCcCChh-HcCEEEEeecCc-cCCCc
Confidence 4678999999999997 9999999999775 345666666532 2222211 100000111100 01 1
Q ss_pred hHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++.+++..+... ..........+..++..+++.+..++.+.+|||||+||++|||+++ .+|++++|||||++||+
T Consensus 87 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~----~~p~llllDEPt~gLD~ 162 (235)
T cd03299 87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALV----VNPKILLLDEPFSALDV 162 (235)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHH----cCCCEEEECCCcccCCH
Confidence 222222111000 0001111223456677889988889999999999999999998864 68899999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.++..+.++|+++.. +.++|++||+.... +.||+++- |++|..
T Consensus 163 ~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~--l~~G~i 208 (235)
T cd03299 163 RTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAI--MLNGKL 208 (235)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 999999999998764 67899999998864 67999988 567765
No 269
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-26 Score=195.83 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=108.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||++++||+++ ||||||+++++++ +..|.+.+++.. +.... ..+ .+.+++
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~-----~~~~~----~~~-------~~~i~~ 77 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKD-----IKKEP----EEV-------KRRIGY 77 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-----cccch----Hhh-------hccEEE
Confidence 35678999999999997 9999999999775 345566555532 22111 111 234566
Q ss_pred HHHh--hcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 132 IFSL--LLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 132 vf~~--L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
+||. ++++.+ ..+.+. |||||+||++|||+++ .+|+++|+||||++||+
T Consensus 78 ~~q~~~~~~~~t----------v~~~~~---------------LS~G~~qrv~laral~----~~p~illlDEPt~~LD~ 128 (173)
T cd03230 78 LPEEPSLYENLT----------VRENLK---------------LSGGMKQRLALAQALL----HDPELLILDEPTSGLDP 128 (173)
T ss_pred EecCCccccCCc----------HHHHhh---------------cCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCH
Confidence 6664 222211 111110 9999999999998875 78999999999999999
Q ss_pred HHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeCCe
Q psy17516 210 SHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVDGN 253 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~ 253 (264)
.++..+.++|+++.+ +.++|++||+...+. .||+++- |.+|.
T Consensus 129 ~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~--l~~g~ 172 (173)
T cd03230 129 ESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI--LNNGR 172 (173)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE--EeCCC
Confidence 999999999999864 578999999988765 7999988 55764
No 270
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.8e-26 Score=213.89 Aligned_cols=183 Identities=17% Similarity=0.123 Sum_probs=124.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----H
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREA----W 122 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~ 122 (264)
..++++||+|++||+++ ||||||++++.++. ..|.+.++|.. +...+ .....++.. +
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~-----i~~~~-~~~~~lr~~i~~v~ 169 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN-----TRSKK-ISSLELRTRIGMVF 169 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE-----ccccc-cchHhhhccEEEEe
Confidence 46789999999999998 99999999987653 36777766643 32111 000112211 1
Q ss_pred HHhhhhhhhHHHhhcCCCc-CCCCCCc-hhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 123 LKVNTDFGSIFSLLLPGSQ-AKLSPPA-GKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 123 ~~v~~~f~~vf~~L~~g~~-~~l~~~~-~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
|...-.-+++++++..+.. ......+ .......++..+++. ...++++..||||||||++||||++ .+|+
T Consensus 170 q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~----~~p~ 245 (329)
T PRK14257 170 QKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIA----LEPE 245 (329)
T ss_pred cCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHH----hCCC
Confidence 1111001345554432110 0011011 111234455566653 3457889999999999999998864 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.+...+.+.|+++.++.++|+|||+...+. .||+++- |.+|..
T Consensus 246 IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driiv--l~~G~i 302 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVF--FYQGWI 302 (329)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999999999887889999999999865 5999988 678854
No 271
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.93 E-value=1.5e-26 Score=198.94 Aligned_cols=161 Identities=21% Similarity=0.214 Sum_probs=111.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+.+++||++++||+++ ||||||+++++++ +..|.+.+.+.. +..... .++.....+.+.
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~----~~~~~i~~~~q~~~~ 84 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTA-----LAEQRD----EPHRNILYLGHLPGL 84 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE-----cccchH----HhhhheEEeccCccc
Confidence 46778999999999997 9999999999775 345556555532 222211 111111011111
Q ss_pred h--hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 129 F--GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 129 f--~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
+ .++++++.... ...... ......++..+++.+..++++.+||||||||++||++++ .+|++++|||||++
T Consensus 85 ~~~~tv~~~l~~~~--~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~ 157 (198)
T TIGR01189 85 KPELSALENLHFWA--AIHGGA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWL----SRAPLWILDEPTTA 157 (198)
T ss_pred ccCCcHHHHHHHHH--HHcCCc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCCcC
Confidence 0 12333321110 000111 223556677889988888999999999999999998864 78999999999999
Q ss_pred CCHHHHHHHHHHHHHhh-cCCeEEEEEeCcc
Q psy17516 207 LDLSHTQNIGQMLKRHF-KTSQFIIVSLKEG 236 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~ 236 (264)
||+.+...+.++|+++. ++.++|+|||+..
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 99999999999999875 4678999999974
No 272
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=1.8e-26 Score=214.38 Aligned_cols=197 Identities=24% Similarity=0.250 Sum_probs=144.0
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhh-HHHHhhhhhcc------chh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLR-TLLFISMEAMT------KKS 94 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKS-TLl~~l~~l~~------~~~ 94 (264)
.+++++++...|......+.+.+ +|||+|++||.++ |||| |-+.++..++. +|.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk-------------~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~ 71 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVK-------------GISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGS 71 (534)
T ss_pred cceeeeccEEEEecCCcceEeec-------------cceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccce
Confidence 34556666666664433333444 5999999999998 9999 55555544443 345
Q ss_pred HHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhc----CCCcC------------CCCCCchhhHHHhHHH
Q psy17516 95 IVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLL----PGSQA------------KLSPPAGKDILDGLEV 158 (264)
Q Consensus 95 ~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~----~g~~~------------~l~~~~~~~~~~~l~~ 158 (264)
+.+.|.+ +-..++.....+| ...++.|||+-. |-.+. ++.........-+++.
T Consensus 72 i~f~G~d-----ll~~se~~lr~iR------G~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~ 140 (534)
T COG4172 72 ILFDGED-----LLAASERQLRGVR------GNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLE 140 (534)
T ss_pred eEEcChh-----hhcCCHHHHhhhc------ccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666653 5566766767766 456778888522 21111 1222333445667888
Q ss_pred HcCCCc---ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEe
Q psy17516 159 NVAFGG---LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSL 233 (264)
Q Consensus 159 ~v~l~~---~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH 233 (264)
.||+++ ..+.+|++|||||||||.||.|+ ++.|+++|+||||.|||..-+..|+++|+++.+ +-.+++|||
T Consensus 141 ~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMAL----an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITH 216 (534)
T COG4172 141 LVGIPEPEKRLDAYPHELSGGQRQRVMIAMAL----ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216 (534)
T ss_pred HcCCCchhhhhhhCCcccCcchhhHHHHHHHH----cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEec
Confidence 999875 45789999999999999997665 589999999999999999999999999999875 678999999
Q ss_pred CcchH-hhccceeEEEeeCCeE
Q psy17516 234 KEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 234 ~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|..+. ..||++|- |..|..
T Consensus 217 DL~iVr~~ADrV~V--M~~G~i 236 (534)
T COG4172 217 DLGIVRKFADRVYV--MQHGEI 236 (534)
T ss_pred cHHHHHHhhhhEEE--EeccEE
Confidence 99988 57999998 667764
No 273
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.1e-26 Score=196.21 Aligned_cols=192 Identities=16% Similarity=0.155 Sum_probs=136.0
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~~~ 101 (264)
+++.++.++|++. ....++|||+++.|++++ +||||+|++++. .|++|.+++.+-+
T Consensus 2 l~v~~l~K~y~~~----------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d 65 (245)
T COG4555 2 LEVTDLTKSYGSK----------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD 65 (245)
T ss_pred eeeeehhhhccCH----------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecc
Confidence 3556788889831 123456999999999998 999999999955 4678888777753
Q ss_pred HHHHHHHhhhHHHHHHHHHHH--------HHhhhhhhhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCC
Q psy17516 102 KLLKVIEELDEKKKIALREAW--------LKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGEL 173 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~--------~~v~~~f~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~L 173 (264)
+.+-....+..+--.+ -.+.+++.+ |..|+ .+...+.+...+.+...+++.+..+++...+
T Consensus 66 -----~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~-Fa~L~-----~l~~~~~kari~~l~k~l~l~~~~~rRv~~~ 134 (245)
T COG4555 66 -----TVRDPSFVRRKIGVLFGERGLYARLTARENLKY-FARLN-----GLSRKEIKARIAELSKRLQLLEYLDRRVGEF 134 (245)
T ss_pred -----cccChHHHhhhcceecCCcChhhhhhHHHHHHH-HHHHh-----hhhhhHHHHHHHHHHHHhChHHHHHHHHhhh
Confidence 2221111111110000 000011100 11111 1222233445677888899999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeC
Q psy17516 174 SGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVD 251 (264)
Q Consensus 174 SGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~ 251 (264)
|-|+||||+||||+ +++|.+++|||||+|||......+.++++++.. +..+|+.||..+-.+ .||+++-+ ..
T Consensus 135 S~G~kqkV~iARAl----vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivl--h~ 208 (245)
T COG4555 135 STGMKQKVAIARAL----VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL--HK 208 (245)
T ss_pred chhhHHHHHHHHHH----hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEE--ec
Confidence 99999999998874 799999999999999999999999999999875 788999999988776 89999874 46
Q ss_pred CeE
Q psy17516 252 GNS 254 (264)
Q Consensus 252 g~s 254 (264)
|..
T Consensus 209 Gev 211 (245)
T COG4555 209 GEV 211 (245)
T ss_pred CcE
Confidence 654
No 274
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=6.5e-26 Score=228.24 Aligned_cols=178 Identities=18% Similarity=0.162 Sum_probs=127.3
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+.+++++||++++|+.++ ||||||+++++++ +.+|.+.+++.+ +.+++.. .+|.....+.++
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~-----i~~~~~~---~~r~~i~~v~q~~~ 541 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD-----LAIADPA---WLRRQMGVVLQENV 541 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe-----hhhCCHH---HHHHhCeEEccCCe
Confidence 346789999999999998 9999999999765 456777777753 5555533 344322222222
Q ss_pred -h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHc-----------CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 -F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNV-----------AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 -f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v-----------~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| +++.+++..+... . ..++ ....+..+ |+..........||||||||++|||++ +++|
T Consensus 542 lf~~ti~eNi~~~~~~---~-~~~~-i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARal----l~~~ 612 (694)
T TIGR01846 542 LFSRSIRDNIALCNPG---A-PFEH-VIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARAL----VGNP 612 (694)
T ss_pred ehhhhHHHHHhcCCCC---C-CHHH-HHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHH----HhCC
Confidence 1 3555555433211 1 1111 11111222 223333455678999999999999886 4799
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
+++||||||++||+.+...+.+.|++..++.|+|+||||..++..||+++- |++|...
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~--l~~G~i~ 670 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIV--LEKGQIA 670 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEE--EeCCEEE
Confidence 999999999999999999999999998778899999999999999999998 6788654
No 275
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2e-26 Score=195.25 Aligned_cols=151 Identities=26% Similarity=0.348 Sum_probs=107.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+.+++||++++|++++ ||||||+++++++. ..|++.+.+.. +...+. ....+ ...+++
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~-~~~~~-------~~~i~~ 80 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED-----LTDLED-ELPPL-------RRRIGM 80 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----ccccch-hHHHH-------hhcEEE
Confidence 46778999999999997 99999999997653 35566665532 322221 01111 133455
Q ss_pred HHHh--hcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 132 IFSL--LLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 132 vf~~--L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
+++. ++++.+ ..+.+ .+. |||||+||++|||+++ .+|++++|||||++||+
T Consensus 81 ~~q~~~~~~~~t----------~~~~l----~~~---------lS~G~~qr~~la~al~----~~p~llilDEP~~~LD~ 133 (178)
T cd03229 81 VFQDFALFPHLT----------VLENI----ALG---------LSGGQQQRVALARALA----MDPDVLLLDEPTSALDP 133 (178)
T ss_pred EecCCccCCCCC----------HHHhe----eec---------CCHHHHHHHHHHHHHH----CCCCEEEEeCCcccCCH
Confidence 5543 111111 11111 111 9999999999998864 78899999999999999
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCC
Q psy17516 210 SHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDG 252 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g 252 (264)
.++..+.++|+++++ +.++|+|||+...+. .||+++- |++|
T Consensus 134 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~--l~~g 177 (178)
T cd03229 134 ITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV--LRDG 177 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE--EeCC
Confidence 999999999999875 478999999988876 7999988 5566
No 276
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.5e-26 Score=220.33 Aligned_cols=181 Identities=17% Similarity=0.167 Sum_probs=122.3
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh----
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD---- 128 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---- 128 (264)
+++++||+|++||+++ ||||||++++.++. ..|.+.+.+.+ +...+.. ..++..+..+.+.
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~~~--~~~~~~i~~~~q~~~~~ 335 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKK-----INNHNAN--EAINHGFALVTEERRST 335 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEE-----CCCCCHH--HHHHCCCEEcCCchhhC
Confidence 6789999999999998 99999999997753 45666665532 3222211 1111111111111
Q ss_pred --hh--hHHHh-----hcCCCcC-CC-CCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 --FG--SIFSL-----LLPGSQA-KL-SPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 --f~--~vf~~-----L~~g~~~-~l-~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
|. +++.+ +...... .. ...........++..+++. +..++++.+|||||||||+||++++ .+|+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~----~~p~ 411 (491)
T PRK10982 336 GIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL----TQPE 411 (491)
T ss_pred CcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh----cCCC
Confidence 00 11111 1000000 00 1011122345566677885 5679999999999999999998864 7889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ +.||+++- |.+|..
T Consensus 412 illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~--l~~g~i 469 (491)
T PRK10982 412 ILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILV--MSNGLV 469 (491)
T ss_pred EEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEE--EECCEE
Confidence 9999999999999999999999998764 68899999998766 68999988 668765
No 277
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.7e-26 Score=194.61 Aligned_cols=196 Identities=19% Similarity=0.221 Sum_probs=144.8
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
.+++++.+.|+ .+...+++|+++++|.+++ +||||||.+++-| .++|++.+.+.+
T Consensus 2 I~i~nv~K~y~-----------------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~ 64 (252)
T COG4604 2 ITIENVSKSYG-----------------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLE 64 (252)
T ss_pred eeehhhhHhhC-----------------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeee
Confidence 35678889998 3566778999999999997 9999999887554 346677777653
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhh---hHHHhhcCCCcCCC--CCC-chhhHHHhHHHHcCCCcccccccCCCCH
Q psy17516 102 KLLKVIEELDEKKKIALREAWLKVNTDFG---SIFSLLLPGSQAKL--SPP-AGKDILDGLEVNVAFGGLWKESLGELSG 175 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~~~v~~~f~---~vf~~L~~g~~~~l--~~~-~~~~~~~~l~~~v~l~~~~~~~~~~LSG 175 (264)
+...+.+..++-.....+ ..++. +|-+.+-.|+..+- .+. +......+.+..+++.+..++++.+|||
T Consensus 65 -----~~~~~s~~LAk~lSILkQ-~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSG 138 (252)
T COG4604 65 -----LTSTPSKELAKKLSILKQ-ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSG 138 (252)
T ss_pred -----cccCChHHHHHHHHHHHh-hchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhccc
Confidence 555554443322211111 11221 45555444443321 122 2223556666788999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEEeeCC
Q psy17516 176 GQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTKFVDG 252 (264)
Q Consensus 176 GekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~~~~g 252 (264)
|||||+-||.. ++++.++++||||-++||-.+...+++.|+++++ +.++|+|=||.++++ +||.++- |.+|
T Consensus 139 GQrQRAfIAMV----laQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVA--lK~G 212 (252)
T COG4604 139 GQRQRAFIAMV----LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVA--LKNG 212 (252)
T ss_pred chhhhhhhhee----eeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheee--ecCC
Confidence 99999999765 4689999999999999999999999999999876 789999999999985 7999988 7788
Q ss_pred eE
Q psy17516 253 NS 254 (264)
Q Consensus 253 ~s 254 (264)
..
T Consensus 213 ~v 214 (252)
T COG4604 213 KV 214 (252)
T ss_pred EE
Confidence 65
No 278
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.93 E-value=1.7e-26 Score=203.99 Aligned_cols=183 Identities=21% Similarity=0.199 Sum_probs=125.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+++++||++.+||+++ ||||||+++++++. ..|.+.+.+.. +...+.. +....-.++.. ..| +
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~-----~~~~~~~-~~~i~~~~q~~-~~~~~ 86 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQD-----ATRVHAR-DRKIGFVFQHY-ALFKH 86 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-----cCcCChh-hcCEEEEecCh-hhccC
Confidence 46778999999999997 99999999997753 45666555532 2222110 00000001111 111 1
Q ss_pred -hHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCC
Q psy17516 131 -SIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208 (264)
Q Consensus 131 -~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD 208 (264)
++.+++..+... ........+.+..++..+++.+..++.+..|||||+||++|||+++ .+|++++|||||++||
T Consensus 87 ~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~----~~p~llllDEP~~~LD 162 (237)
T TIGR00968 87 LTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALA----VEPQVLLLDEPFGALD 162 (237)
T ss_pred CcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCC
Confidence 333333211110 0111111223456677788888889999999999999999998874 6889999999999999
Q ss_pred HHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeEE
Q psy17516 209 LSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 209 ~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s~ 255 (264)
+.+...+.++|+++.+ +.++|++||+... .+.||+++. +.+|...
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~--l~~g~i~ 210 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVV--MSNGKIE 210 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEE--EECCEEE
Confidence 9999999999998765 5789999999986 467999988 5677653
No 279
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.93 E-value=2.7e-26 Score=198.21 Aligned_cols=176 Identities=22% Similarity=0.321 Sum_probs=118.0
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhhcc-chhHHHhhHHHHHHHHHh-hhHHHHHHHHHHHHHhhhhhhhHH
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEAMT-KKSIVESDRAKLLKVIEE-LDEKKKIALREAWLKVNTDFGSIF 133 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-~~~~~~~~~~~l~~~I~~-l~~~~~~~~~~~~~~v~~~f~~vf 133 (264)
.+++++++.+| +++ ||||||++++.++.. .....+.+. ...+.+.. -+..... ....++.+|
T Consensus 13 ~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~v~~vf 82 (197)
T cd03278 13 ADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGE-KMSDVIFAGSETRKPA--------NFAEVTLTF 82 (197)
T ss_pred CCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhccc-CHHHHhccCCCCCCCC--------ceEEEEEEE
Confidence 45789999999 876 999999998865532 111111110 00011100 0000000 013345666
Q ss_pred HhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHH
Q psy17516 134 SLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213 (264)
Q Consensus 134 ~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~ 213 (264)
|.--.- .... ....+..++.. .+..++++.+||||||||++||++++..+++||+++++||||++||+.+..
T Consensus 83 q~~~~~----~~~~-~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~ 154 (197)
T cd03278 83 DNSDGR----YSII-SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVE 154 (197)
T ss_pred EcCCCc----eeEE-ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHH
Confidence 631100 0000 11223333333 566788999999999999999999875456788999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEee-CCeEE
Q psy17516 214 NIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFV-DGNSN 255 (264)
Q Consensus 214 ~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~-~g~s~ 255 (264)
.+.++|+++.++.++|+|||+...++.||+++++++. +|.|+
T Consensus 155 ~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~~~~~~~~ 197 (197)
T cd03278 155 RFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTMQESGVSK 197 (197)
T ss_pred HHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEeccCCCCC
Confidence 9999999987778999999999999999999999874 58763
No 280
>KOG0058|consensus
Probab=99.93 E-value=1.3e-26 Score=227.69 Aligned_cols=203 Identities=19% Similarity=0.259 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhh--hccchhHH
Q psy17516 25 DKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIV 96 (264)
Q Consensus 25 n~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~ 96 (264)
+.....+++++.+.|..+. +..+++++||+|++||++| +||||+..++.- -|+.|.++
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp--------------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRP--------------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred cccceEEEEEeeeecCCCC--------------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 4556677888888888662 3457788999999999998 999999998743 35677888
Q ss_pred HhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---h-hhHHHhhcCCCcCCCCCCchh---hHHHhHHHHcCCCcccc--
Q psy17516 97 ESDRAKLLKVIEELDEKKKIALREAWLKVNTD---F-GSIFSLLLPGSQAKLSPPAGK---DILDGLEVNVAFGGLWK-- 167 (264)
Q Consensus 97 ~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f-~~vf~~L~~g~~~~l~~~~~~---~~~~~l~~~v~l~~~~~-- 167 (264)
.+|.. |.+++.. .+++....|.|+ | ++|-+++.-|.. ....++.. +.+..-....++++..+
T Consensus 527 lDG~~-----i~~~~~~---~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~ 597 (716)
T KOG0058|consen 527 LDGVP-----ISDINHK---YLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTV 597 (716)
T ss_pred ECCee-----hhhcCHH---HHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccc
Confidence 88864 7777754 344333222222 1 244444443332 10101111 11111122235555444
Q ss_pred --cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhcccee
Q psy17516 168 --ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 168 --~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~ 245 (264)
.+..+||||||||+|||||| +++|.++||||.|||||.++...|-+.|.+..++.|+|+|.||..+++.||+|.
T Consensus 598 VGEkG~qLSGGQKQRIAIARAL----lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Iv 673 (716)
T KOG0058|consen 598 VGEKGSQLSGGQKQRIAIARAL----LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIV 673 (716)
T ss_pred cCCccccccchHHHHHHHHHHH----hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEE
Confidence 45679999999999998875 689999999999999999999999999999888899999999999999999887
Q ss_pred EEEeeCCeEEE
Q psy17516 246 RTKFVDGNSNV 256 (264)
Q Consensus 246 ~v~~~~g~s~i 256 (264)
- +++|...-
T Consensus 674 v--i~~G~V~E 682 (716)
T KOG0058|consen 674 V--IDKGRVVE 682 (716)
T ss_pred E--EcCCeEEe
Confidence 7 56776543
No 281
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.6e-26 Score=191.88 Aligned_cols=147 Identities=27% Similarity=0.328 Sum_probs=107.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+.+++||++++|++++ ||||||+++++++ +.+|.+.+.+.. +..... ..++ +.+++
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~---~~~~-------~~i~~ 80 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD-----LRDLDL---ESLR-------KNIAY 80 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE-----hhhcCH---HHHH-------hhEEE
Confidence 46678999999999998 9999999999775 345666665532 322221 1111 23444
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
+|+... +.. ....+.+ |||||+||++||++++ .+|+++||||||++||+.+
T Consensus 81 ~~~~~~------~~~---~t~~e~l----------------LS~G~~~rl~la~al~----~~p~llllDEP~~gLD~~~ 131 (171)
T cd03228 81 VPQDPF------LFS---GTIRENI----------------LSGGQRQRIAIARALL----RDPPILILDEATSALDPET 131 (171)
T ss_pred EcCCch------hcc---chHHHHh----------------hCHHHHHHHHHHHHHh----cCCCEEEEECCCcCCCHHH
Confidence 444310 000 0111111 9999999999998864 6889999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCC
Q psy17516 212 TQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDG 252 (264)
Q Consensus 212 ~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g 252 (264)
+..+.++|+++.++.++|++||+...+..||+++- +.+|
T Consensus 132 ~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~--l~~g 170 (171)
T cd03228 132 EALILEALRALAKGKTVIVIAHRLSTIRDADRIIV--LDDG 170 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEE--EcCC
Confidence 99999999988767889999999998888999987 5566
No 282
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=4.1e-26 Score=203.38 Aligned_cols=106 Identities=76% Similarity=1.149 Sum_probs=94.8
Q ss_pred HHHhHHHHcCCC--------------------cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 152 ILDGLEVNVAFG--------------------GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 152 ~~~~l~~~v~l~--------------------~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
.+.+++..+++. +..+.++.+||||||||++||++++.+.+.||+++++||||++||+.+
T Consensus 126 ~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~ 205 (251)
T cd03273 126 RVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSH 205 (251)
T ss_pred HHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHH
Confidence 455666778875 445678999999999999999998765668899999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEEEE
Q psy17516 212 TQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVT 257 (264)
Q Consensus 212 ~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~i~ 257 (264)
+..+.++|+++.++.++|+|||+.++++.||++|+|+|+||+|+|+
T Consensus 206 ~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~~~~~ 251 (251)
T cd03273 206 TQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGTSTVT 251 (251)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCEEecC
Confidence 9999999999877889999999999999999999999999999874
No 283
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1e-25 Score=193.24 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=109.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+++++||++++|++++ ||||||+++++++ +..|++.+++.. +. ..++ ..+
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~-----~~-------~~~~-------~~i 81 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRP-----LD-------KNFQ-------RST 81 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEe-----hH-------HHhh-------hce
Confidence 45678999999999997 9999999999874 346666665532 21 1111 234
Q ss_pred hhHHHh--hcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 130 GSIFSL--LLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 130 ~~vf~~--L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
++++|. ++++.+. .+...... . ..+|||||+||++|||+++ .+|+++++||||++|
T Consensus 82 ~~~~q~~~~~~~~tv------~~~l~~~~--~----------~~~LSgGe~qrv~la~al~----~~p~vlllDEP~~~L 139 (192)
T cd03232 82 GYVEQQDVHSPNLTV------REALRFSA--L----------LRGLSVEQRKRLTIGVELA----AKPSILFLDEPTSGL 139 (192)
T ss_pred EEecccCccccCCcH------HHHHHHHH--H----------HhcCCHHHhHHHHHHHHHh----cCCcEEEEeCCCcCC
Confidence 555553 2222111 11111110 0 0199999999999998864 688999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CCeEEEEEeCcch--HhhccceeEEEeeC-CeE
Q psy17516 208 DLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM--FSNANVIFRTKFVD-GNS 254 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~--~~~ad~l~~v~~~~-g~s 254 (264)
|+.++..+.++|+++++ +.++|+|||+... ...||+++- |++ |..
T Consensus 140 D~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~--l~~~g~i 188 (192)
T cd03232 140 DSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLL--LKRGGKT 188 (192)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEE--EcCCCeE
Confidence 99999999999998864 6889999999873 688999987 667 653
No 284
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.5e-26 Score=196.19 Aligned_cols=173 Identities=23% Similarity=0.260 Sum_probs=130.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..+.++|++|.+||++. |||||||++++++. .+|.+..+++. |+.-. ..-+-
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~-----i~gPg---------------aergv 78 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRR-----IEGPG---------------AERGV 78 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEe-----ccCCC---------------cccee
Confidence 35668999999999997 99999999997754 35555555532 22211 11245
Q ss_pred HHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
|||+ |+|..++ ++.+....+++...+..||+.+..++++.+|||||||||.||||+| -+|.++
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa----~eP~~L 154 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALA----VEPQLL 154 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhh----cCcceE
Confidence 5664 5555443 1222233356677788999999999999999999999999999876 588999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEEEEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSNVTR 258 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~i~~ 258 (264)
+||||.+|||.-.++++.++|-++.+ +.++++|||+.+.+ -.|++++- |..|--+|++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvv--lsp~pgRvv~ 215 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVV--LSPGPGRVVE 215 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEE--ecCCCceeeE
Confidence 99999999999999999999988764 78999999997765 46899887 4455445554
No 285
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2.9e-26 Score=196.82 Aligned_cols=169 Identities=18% Similarity=0.161 Sum_probs=117.1
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+++.+ +||++++||+++ ||||||+++++++ ++.|++.+.+.. +.... .......++.....+
T Consensus 14 ~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----i~~~~---~~~~~~~~~~~~~~~~ 84 (195)
T PRK13541 14 KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCN-----INNIA---KPYCTYIGHNLGLKLE 84 (195)
T ss_pred cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcc-----cChhh---hhhEEeccCCcCCCcc
Confidence 34555 999999999997 9999999999775 345666665532 22221 000000011111111
Q ss_pred hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 130 GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 130 ~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
.++++++...... . ...+....++..+++.+..++++.+|||||+||++||++++ .+|++++|||||++||+
T Consensus 85 ~tv~~~l~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~----~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 85 MTVFENLKFWSEI--Y--NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIA----CQSDLWLLDEVETNLSK 156 (195)
T ss_pred CCHHHHHHHHHHh--c--ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCH
Confidence 2344433211100 0 11223455666778888888999999999999999998864 78899999999999999
Q ss_pred HHHHHHHHHHHHhh-cCCeEEEEEeCcchHhhccce
Q psy17516 210 SHTQNIGQMLKRHF-KTSQFIIVSLKEGMFSNANVI 244 (264)
Q Consensus 210 ~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~~~ad~l 244 (264)
.++..+.++|++.. ++.++|+|||+....+.||.+
T Consensus 157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 157 ENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 99999999998654 468899999999999999875
No 286
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=2e-26 Score=200.83 Aligned_cols=200 Identities=22% Similarity=0.222 Sum_probs=141.6
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhcc--chhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT--KKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~--~~~~~~~~ 99 (264)
++++++++...|. .-..+++|||+|++||+++ +||||||++++++.+ .|.+.+.+
T Consensus 2 ~mL~v~~l~~~YG-----------------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G 64 (237)
T COG0410 2 PMLEVENLSAGYG-----------------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64 (237)
T ss_pred CceeEEeEeeccc-----------------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECC
Confidence 3556677777787 1345667999999999998 999999999988654 46677776
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhh---hhh--hHHHhhcCCCcCCCCCCchhhHHHhHHHH-cCCCcccccccCCC
Q psy17516 100 RAKLLKVIEELDEKKKIALREAWLKVNT---DFG--SIFSLLLPGSQAKLSPPAGKDILDGLEVN-VAFGGLWKESLGEL 173 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~~~~v~~---~f~--~vf~~L~~g~~~~l~~~~~~~~~~~l~~~-v~l~~~~~~~~~~L 173 (264)
++ |..+...++.+.--+| |++ -|. +|.++|..|....-.........+.+... =.+.+.+++..+.|
T Consensus 65 ~d-----it~~p~~~r~r~Gi~~--VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~L 137 (237)
T COG0410 65 ED-----ITGLPPHERARLGIAY--VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTL 137 (237)
T ss_pred ee-----cCCCCHHHHHhCCeEe--CcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCC
Confidence 53 7777655444322111 221 122 56666666544321101111112222222 23557788999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEee
Q psy17516 174 SGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFV 250 (264)
Q Consensus 174 SGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~ 250 (264)
||||+|++|||||+ +..|++++|||||.||-|.-+++|.+.|+++++ +.++++|-+|-..+ +.||+.|- |+
T Consensus 138 SGGEQQMLAiaRAL----m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yv--le 211 (237)
T COG0410 138 SGGEQQMLAIARAL----MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYV--LE 211 (237)
T ss_pred ChHHHHHHHHHHHH----hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEE--Ee
Confidence 99999999999876 578899999999999999999999999999985 34788899887765 78999998 88
Q ss_pred CCeEEEE
Q psy17516 251 DGNSNVT 257 (264)
Q Consensus 251 ~g~s~i~ 257 (264)
+|.....
T Consensus 212 ~Griv~~ 218 (237)
T COG0410 212 NGRIVLS 218 (237)
T ss_pred CCEEEEe
Confidence 9987543
No 287
>KOG0996|consensus
Probab=99.93 E-value=2.5e-25 Score=224.84 Aligned_cols=209 Identities=23% Similarity=0.375 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhHHH
Q psy17516 4 HEVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRTLL 83 (264)
Q Consensus 4 ~~~~~~~~~l~~~~~~l~~~vn~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKSTLl 83 (264)
..+..++.-|+.+.+.++ .||..++.+|..-...|..+
T Consensus 1074 ~~i~e~i~~lE~~~~~l~-~vd~~~i~eY~~k~~~y~~r----------------------------------------- 1111 (1293)
T KOG0996|consen 1074 DNINEKIALLEKRVEELR-EVDLGVIAEYAKKVELYLKR----------------------------------------- 1111 (1293)
T ss_pred hhHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 344556788999999997 89999999999999999733
Q ss_pred HhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcCCCcCCCCCCchh-hHHHhHHHHcCC
Q psy17516 84 FISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGK-DILDGLEVNVAF 162 (264)
Q Consensus 84 ~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~g~~~~l~~~~~~-~~~~~l~~~v~l 162 (264)
...-..+....++..+.+..+...+...|+..|.-|..+...+||.+..||.|.|.+.+.. ++.+|+.+.|.|
T Consensus 1112 ------v~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~GGdAeLElVDslDPFseGV~FSVrP 1185 (1293)
T KOG0996|consen 1112 ------VAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITLGGDAELELVDSLDPFSEGVMFSVRP 1185 (1293)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEeeccCCCcccCceEEeeC
Confidence 1111222222333344566777777888999999999999999999999999998876654 467899999999
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhcc
Q psy17516 163 GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNAN 242 (264)
Q Consensus 163 ~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad 242 (264)
|.+..+.+..||||||.+-+||++||...++|.|||++||++||||..|+..|.++|++..+++||||||.|..|++.||
T Consensus 1186 pKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnMFELa~ 1265 (1293)
T KOG0996|consen 1186 PKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELAN 1265 (1293)
T ss_pred chhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeeCCeEEEEEee
Q psy17516 243 VIFRTKFVDGNSNVTRTV 260 (264)
Q Consensus 243 ~l~~v~~~~g~s~i~~~~ 260 (264)
|++||.-.||.++=+.+.
T Consensus 1266 rLvGIYKtdn~Tksvti~ 1283 (1293)
T KOG0996|consen 1266 RLVGIYKTDNCTKSVTIN 1283 (1293)
T ss_pred hheeeEeecCccceeEec
Confidence 999986667776655444
No 288
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.93 E-value=6.3e-26 Score=197.63 Aligned_cols=176 Identities=18% Similarity=0.164 Sum_probs=114.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHH-HHHHHHHHHHhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKK-KIALREAWLKVNTDF- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~-~~~~~~~~~~v~~~f- 129 (264)
.+++++||++++|++++ ||||||+++++++ ++.|.+.+.+.. +..++... ....+.....+.+..
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~~~~~i~~~~q~~~ 89 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKN-----ESEPSFEATRSRNRYSVAYAAQKPW 89 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcc-----cccccccccchhhcceEEEEcCCCc
Confidence 46778999999999998 9999999999775 345666655532 22221100 011111111111111
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-----------cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-----------GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-----------~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
.++++++..+.. . .. .....+...+++. ...+.++..|||||+||++||+++ +.+|
T Consensus 90 ~~~~t~~~nl~~~~~----~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral----~~~p 159 (218)
T cd03290 90 LLNATVEENITFGSP----F-NK-QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARAL----YQNT 159 (218)
T ss_pred cccccHHHHHhhcCc----C-CH-HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHH----hhCC
Confidence 134444332111 0 11 1112222233332 123467899999999999999886 4788
Q ss_pred CEEEeecCCCCCCHHHHHHHHH--HHHHhhc-CCeEEEEEeCcchHhhccceeEEEeeCC
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQ--MLKRHFK-TSQFIIVSLKEGMFSNANVIFRTKFVDG 252 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~--ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~v~~~~g 252 (264)
+++||||||++||+.++..+++ +++.+.+ +.++|++||+...+..||+++- +++|
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~--l~~G 217 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIA--MKDG 217 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEE--ecCC
Confidence 9999999999999999999998 6666544 6889999999998889999876 5566
No 289
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=7.3e-26 Score=201.81 Aligned_cols=162 Identities=17% Similarity=0.204 Sum_probs=113.3
Q ss_pred cccceeee-----ccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 63 SMSSFSVK-----VGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 63 ~~v~~~v~-----~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+++|++. +||+++ ||||||+++++++ +..|.+.+.+.. |.-+ .|.+...+
T Consensus 11 ~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~-----i~~~-----------~q~~~~~~ 74 (246)
T cd03237 11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT-----VSYK-----------PQYIKADY 74 (246)
T ss_pred CcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCce-----EEEe-----------cccccCCC
Confidence 35666665 789887 9999999999775 345555544421 1111 11111111
Q ss_pred -hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCC
Q psy17516 130 -GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208 (264)
Q Consensus 130 -~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD 208 (264)
.++.+.+...... .. ........++..+++.+..++++.+|||||+||++||++++ .+|+++||||||++||
T Consensus 75 ~~tv~e~l~~~~~~-~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~----~~p~llllDEPt~~LD 147 (246)
T cd03237 75 EGTVRDLLSSITKD-FY--THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLS----KDADIYLLDEPSAYLD 147 (246)
T ss_pred CCCHHHHHHHHhhh-cc--ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCC
Confidence 2344443211000 00 01122345666788888888999999999999999998764 7899999999999999
Q ss_pred HHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEE
Q psy17516 209 LSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRT 247 (264)
Q Consensus 209 ~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v 247 (264)
+.++..+.++|+++.+ +.++|+|||+...+. .||+++-+
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l 189 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF 189 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999864 688999999988775 69999874
No 290
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.93 E-value=1.6e-25 Score=220.36 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=122.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..++++||++++|+.++ ||||||+++++++ |++|.+.+++.+ +..++. ..++..+..+.++. +
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~-----i~~~~~---~~~~~~i~~v~q~~-~ 426 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAA-----VSADSR---DDYRDLFSAIFADF-H 426 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----CCCCCH---HHHHhhCcEEccCh-h
Confidence 46788999999999998 9999999998663 456777776642 444442 22332222222221 2
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccc------cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKES------LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~------~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
+|+...... ..+...++....++..+++.+..... ...||||||||++|||++ +++||++||||||+
T Consensus 427 lf~~ti~~n---~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal----l~~~~ililDE~ts 499 (555)
T TIGR01194 427 LFDDLIGPD---EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW----LEDRPILLFDEWAA 499 (555)
T ss_pred hhhhhhhcc---cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH----HcCCCEEEEeCCcc
Confidence 333222110 11111223344556677776544332 367999999999999876 57999999999999
Q ss_pred CCCHHHHHHHHHHH-HHhh-cCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQML-KRHF-KTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll-~~~~-~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
+||+.+...+.+.+ +.+. ++.|+|+||||..+++.||+++- +++|..
T Consensus 500 ~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~--l~~G~i 548 (555)
T TIGR01194 500 DQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK--LAAGCI 548 (555)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE--EECCEE
Confidence 99999999998754 4443 47899999999999999999998 678864
No 291
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=3.6e-26 Score=197.23 Aligned_cols=168 Identities=19% Similarity=0.183 Sum_probs=112.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||+|++|++++ ||||||+++++++ ++.|++.+.+. |.-+. +...-.-.+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~------i~~~~-----------q~~~l~~~t 81 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS------IAYVS-----------QEPWIQNGT 81 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCE------EEEEe-----------cCchhccCc
Confidence 46778999999999998 9999999999775 34566555441 11111 100000125
Q ss_pred HHHhhcCCCcCCCCCCchhhHH--HhHHHHc-----CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDIL--DGLEVNV-----AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~--~~l~~~v-----~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
+++++..+... ......... .++...+ ++....++.+.+||||||||++|||+++ .+|+++|+||||
T Consensus 82 ~~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~----~~p~llllDEP~ 155 (204)
T cd03250 82 IRENILFGKPF--DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY----SDADIYLLDDPL 155 (204)
T ss_pred HHHHhccCCCc--CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCcc
Confidence 56665443211 100001111 0111112 2233455678999999999999998864 789999999999
Q ss_pred CCCCHHHHHHHHH-HHHHhhc-CCeEEEEEeCcchHhhccceeEEEeeCC
Q psy17516 205 AALDLSHTQNIGQ-MLKRHFK-TSQFIIVSLKEGMFSNANVIFRTKFVDG 252 (264)
Q Consensus 205 a~LD~~~~~~i~~-ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~v~~~~g 252 (264)
++||+.+...+.+ ++++..+ +.++|+|||+...+..||+++- |.+|
T Consensus 156 ~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~--l~~G 203 (204)
T cd03250 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVV--LDNG 203 (204)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEE--EeCC
Confidence 9999999999998 5666544 5789999999998878999987 5566
No 292
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=8.2e-26 Score=192.14 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=108.4
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
+.+++||++++|++++ ||||||+++++++. +.|++.+.+.+ +...+.. ..+ .+.++++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~~~~~--~~~-------~~~i~~~ 80 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKP-----VTRRSPR--DAI-------RAGIAYV 80 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-----CCccCHH--HHH-------hCCeEEe
Confidence 5678999999999997 99999999997753 45666665532 3332211 111 2345666
Q ss_pred HHh-----hcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 133 FSL-----LLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 133 f~~-----L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
||. +++..+ ..+.+.... .||||||||++|||++ +.+|+++||||||++|
T Consensus 81 ~q~~~~~~~~~~~t----------~~e~l~~~~-----------~LS~G~~qrl~la~al----~~~p~llllDEP~~~L 135 (182)
T cd03215 81 PEDRKREGLVLDLS----------VAENIALSS-----------LLSGGNQQKVVLARWL----ARDPRVLILDEPTRGV 135 (182)
T ss_pred cCCcccCcccCCCc----------HHHHHHHHh-----------hcCHHHHHHHHHHHHH----ccCCCEEEECCCCcCC
Confidence 654 121111 111111100 0999999999999876 4789999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCe
Q psy17516 208 DLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGN 253 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~ 253 (264)
|+.++..+.++|+++.+ +.++|++||+...+ +.||+++- +++|.
T Consensus 136 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~--l~~G~ 181 (182)
T cd03215 136 DVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILV--MYEGR 181 (182)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--ecCCc
Confidence 99999999999998864 67899999998766 56999988 55764
No 293
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=1.4e-25 Score=220.08 Aligned_cols=181 Identities=18% Similarity=0.233 Sum_probs=124.3
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+..++++||++++|+.++ ||||||+++++++ +.+|.+.+++.+ +..++. ..+++....+.++.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-----i~~~~~---~~~~~~i~~v~q~~~ 402 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGAD-----LKQWDR---ETFGKHIGYLPQDVE 402 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe-----hhhCCH---HHHhhheEEecCCcc
Confidence 356789999999999998 9999999999664 456667666642 444442 22333322222321
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhH-----HHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDI-----LDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~-----~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
+++.+++..+... ...++..+. +..+...+ |+..........||||||||++|||++ +++|+++|
T Consensus 403 lf~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal----l~~~~ili 477 (544)
T TIGR01842 403 LFPGTVAENIARFGEN-ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL----YGDPKLVV 477 (544)
T ss_pred cccccHHHHHhccCCC-CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH----hcCCCEEE
Confidence 3444554322110 000000010 11222222 333344556789999999999999875 57999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
|||||++||+.+...+.+.|+++. ++.++|+|||+..+.+.||+++- +++|..
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~--l~~G~i 531 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILV--LQDGRI 531 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999999886 46899999999999999999988 678865
No 294
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.93 E-value=4.5e-26 Score=203.77 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=119.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||++++|++++ ||||||+++++++ +..|.+.+.+.. +...+.. .++.....+.+..
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~-----i~~~~~~---~~~~~i~~v~q~~~l 106 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGID-----ISKLPLH---TLRSRLSIILQDPIL 106 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEE-----hhhCCHH---HHhhhEEEECCCCcc
Confidence 46778999999999997 9999999999775 346666666542 3333211 1221111111111
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhH-----HHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDI-----LDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~-----~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
.++.+++.+... .......+. +..+...+ ++....+..+..|||||+||++|||++ +.+|+++||
T Consensus 107 ~~~tv~~nl~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral----~~~p~llll 180 (257)
T cd03288 107 FSGSIRFNLDPECK--CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF----VRKSSILIM 180 (257)
T ss_pred cccHHHHhcCcCCC--CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH----hcCCCEEEE
Confidence 122222221100 000000011 11111122 344445567789999999999999886 478899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
||||++||+.+...+.++++++.++.++|++||+...+..||+++- |.+|...
T Consensus 181 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~--l~~G~i~ 233 (257)
T cd03288 181 DEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLV--LSRGILV 233 (257)
T ss_pred eCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999987778899999999999888999988 6687653
No 295
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=9e-27 Score=201.40 Aligned_cols=177 Identities=18% Similarity=0.128 Sum_probs=120.2
Q ss_pred HHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc-----cchhHHHhh
Q psy17516 31 SLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-----TKKSIVESD 99 (264)
Q Consensus 31 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-----~~~~~~~~~ 99 (264)
.++++.+.|..+.. ++.+++++||++++|++++ ||||||+++++++. ..|.+.+.+
T Consensus 5 ~~~~~~~~~~~~~~-------------~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g 71 (202)
T cd03233 5 SWRNISFTTGKGRS-------------KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71 (202)
T ss_pred EEEccEEEeccCCC-------------CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC
Confidence 45677788875411 1346678999999999998 99999999997763 356666655
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHH
Q psy17516 100 RAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQ 177 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGe 177 (264)
.. +.... ... .+.++++++. ++++.+. .+...... .. ..++++..|||||
T Consensus 72 ~~-----~~~~~----~~~-------~~~i~~~~q~~~~~~~~tv------~~~l~~~~----~~--~~~~~~~~LS~Ge 123 (202)
T cd03233 72 IP-----YKEFA----EKY-------PGEIIYVSEEDVHFPTLTV------RETLDFAL----RC--KGNEFVRGISGGE 123 (202)
T ss_pred EE-----Cccch----hhh-------cceEEEEecccccCCCCcH------HHHHhhhh----hh--ccccchhhCCHHH
Confidence 32 22211 111 1334555553 2222221 01111100 01 1567889999999
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEe-Cc-chHhhccceeEEEeeCCe
Q psy17516 178 RSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSL-KE-GMFSNANVIFRTKFVDGN 253 (264)
Q Consensus 178 kqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH-~~-~~~~~ad~l~~v~~~~g~ 253 (264)
+||++||++++ .+|+++||||||++||+.++..+.++|+++.+ +.++|++|| +. ...+.||+++- |.+|.
T Consensus 124 ~qrl~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~--l~~G~ 197 (202)
T cd03233 124 RKRVSIAEALV----SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV--LYEGR 197 (202)
T ss_pred HHHHHHHHHHh----hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE--EECCE
Confidence 99999998864 68899999999999999999999999999864 456666555 43 45678999998 66886
Q ss_pred E
Q psy17516 254 S 254 (264)
Q Consensus 254 s 254 (264)
.
T Consensus 198 i 198 (202)
T cd03233 198 Q 198 (202)
T ss_pred E
Confidence 4
No 296
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=4.5e-26 Score=244.22 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=124.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------------------------------------------
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM------------------------------------------- 90 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~------------------------------------------- 90 (264)
..++++||+|++|+.++ ||||||+++++++.
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 46778999999999998 99999999886542
Q ss_pred -------------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---h-hhHHHhhcCCCcCCCCCCchhhHH
Q psy17516 91 -------------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD---F-GSIFSLLLPGSQAKLSPPAGKDIL 153 (264)
Q Consensus 91 -------------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f-~~vf~~L~~g~~~~l~~~~~~~~~ 153 (264)
.+|.++++|.+ |..++. ..+|..+..|.|+ | ++|.+++..|... .. .++ +
T Consensus 1262 ~~~~~~~~~~~~~~~G~I~idG~d-----i~~~~~---~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~---at-~ee-I 1328 (1466)
T PTZ00265 1262 KEGGSGEDSTVFKNSGKILLDGVD-----ICDYNL---KDLRNLFSIVSQEPMLFNMSIYENIKFGKED---AT-RED-V 1328 (1466)
T ss_pred cccccccccccCCCCCeEEECCEE-----HHhCCH---HHHHhhccEeCCCCccccccHHHHHhcCCCC---CC-HHH-H
Confidence 25667777753 666653 3455444444444 2 4566665544210 11 111 1
Q ss_pred HhHHHHc-------CCCccccc----ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHh
Q psy17516 154 DGLEVNV-------AFGGLWKE----SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH 222 (264)
Q Consensus 154 ~~l~~~v-------~l~~~~~~----~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~ 222 (264)
...+..+ .+|+..+. ....||||||||+|||||| +++|+++|||||||+||..+...|.+.|.+.
T Consensus 1329 ~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL----lr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265 1329 KRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL----LREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred HHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH----hcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 1112222 34443333 4567999999999999886 5799999999999999999999999999987
Q ss_pred h--cCCeEEEEEeCcchHhhccceeEEEeeC
Q psy17516 223 F--KTSQFIIVSLKEGMFSNANVIFRTKFVD 251 (264)
Q Consensus 223 ~--~~~q~IiVTH~~~~~~~ad~l~~v~~~~ 251 (264)
. ++.|+|+||||..+++.||+++- |++
T Consensus 1405 ~~~~~~TvIiIaHRlsti~~aD~Ivv--l~~ 1433 (1466)
T PTZ00265 1405 KDKADKTIITIAHRIASIKRSDKIVV--FNN 1433 (1466)
T ss_pred hccCCCEEEEEechHHHHHhCCEEEE--EeC
Confidence 4 57899999999999999999998 667
No 297
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.93 E-value=2.4e-26 Score=229.97 Aligned_cols=197 Identities=22% Similarity=0.226 Sum_probs=139.6
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+.+++++.++|..++- .+.+++++||++++||+++ ||||||+++++++ ++.|.+.+++.
T Consensus 4 ~l~~~nl~~~y~~~~~-------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 70 (648)
T PRK10535 4 LLELKDIRRSYPSGEE-------------QVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQ 70 (648)
T ss_pred EEEEeeEEEEeCCCCC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 4556777778852210 0235678999999999998 9999999999775 34566666664
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
+ +...+......++ .+.++++||. ++++.+. .....+.......++..+|+.+..+
T Consensus 71 ~-----i~~~~~~~~~~~~------~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 139 (648)
T PRK10535 71 D-----VATLDADALAQLR------REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE 139 (648)
T ss_pred E-----cCcCCHHHHHHHH------hccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhc
Confidence 2 4444333222222 1223333332 2222111 1111111224566777889988889
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccceeE
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
+.+.+|||||+||++|||+|+ .+|+++++||||++||+.++..+.++|+++.+ +.++|+|||+....+.||+++-
T Consensus 140 ~~~~~LS~Gq~qrv~LAraL~----~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~ 215 (648)
T PRK10535 140 YQPSQLSGGQQQRVSIARALM----NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIE 215 (648)
T ss_pred CCcccCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEE
Confidence 999999999999999998864 68899999999999999999999999998864 6899999999999999999988
Q ss_pred EEeeCCeEE
Q psy17516 247 TKFVDGNSN 255 (264)
Q Consensus 247 v~~~~g~s~ 255 (264)
|++|...
T Consensus 216 --l~~G~i~ 222 (648)
T PRK10535 216 --IRDGEIV 222 (648)
T ss_pred --EECCEEE
Confidence 5677653
No 298
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-25 Score=206.18 Aligned_cols=184 Identities=16% Similarity=0.109 Sum_probs=123.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||+|++||+++ ||||||+++++++. .+|.+.+.+.. +..... ....++.....+.
T Consensus 59 ~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~-----i~~~~~-~~~~~~~~i~~v~ 132 (305)
T PRK14264 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD-----IYQDGV-NLVELRKRVGMVF 132 (305)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE-----cccccc-cHHHHhhceEEEc
Confidence 46678999999999997 99999999997763 46666665532 211100 0111121111111
Q ss_pred hhh----hhHHHhhcCCCc----------CC-CCC--Cc-hhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHH
Q psy17516 127 TDF----GSIFSLLLPGSQ----------AK-LSP--PA-GKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALS 184 (264)
Q Consensus 127 ~~f----~~vf~~L~~g~~----------~~-l~~--~~-~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA 184 (264)
++. .++++++..+.. +. +.. .. ....+..++..+++. +..++++.+|||||+||++||
T Consensus 133 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LA 212 (305)
T PRK14264 133 QSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIA 212 (305)
T ss_pred cCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHH
Confidence 111 244444322110 00 000 11 123345566667763 456788999999999999999
Q ss_pred HHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 185 LVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 185 ~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++++ .+|+++||||||++||+.++..+.++|++++++.++|+|||+...+ +.||+++-+ +++|..
T Consensus 213 raL~----~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~-l~~G~i 278 (305)
T PRK14264 213 RCLA----VDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF-LTGGEL 278 (305)
T ss_pred HHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE-ecCCEE
Confidence 8864 7889999999999999999999999999987778899999999875 679986532 457765
No 299
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.92 E-value=1.7e-25 Score=196.10 Aligned_cols=172 Identities=19% Similarity=0.208 Sum_probs=118.1
Q ss_pred eeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh--hh-hhHHHh
Q psy17516 67 FSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT--DF-GSIFSL 135 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~--~f-~~vf~~ 135 (264)
|++++||+++ ||||||+++++++ +..|++.+++.+ +.. .+....-.++.... .+ .+++++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-----~~~----~~~~i~~v~q~~~~~~~~~~tv~~~ 71 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGK----GWRHIGYVPQRHEFAWDFPISVAHT 71 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc-----chH----hhCcEEEecccccccCCCCccHHHH
Confidence 5789999998 9999999999775 345666666642 211 00000001111110 01 134444
Q ss_pred hcCCCcC---CCC-CC-chhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHH
Q psy17516 136 LLPGSQA---KLS-PP-AGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210 (264)
Q Consensus 136 L~~g~~~---~l~-~~-~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~ 210 (264)
+..+... ... .. ...+.+..++..+++.+..++++.+||||||||++|||++ +.+|+++|+||||++||+.
T Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral----~~~p~llilDEP~~~LD~~ 147 (223)
T TIGR03771 72 VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL----ATRPSVLLLDEPFTGLDMP 147 (223)
T ss_pred HHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHH----hcCCCEEEEeCCcccCCHH
Confidence 3222110 010 11 1123456677788998888899999999999999999886 4789999999999999999
Q ss_pred HHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 211 HTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 211 ~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++..+.++|+++.+ +.++|+|||+...+ +.||+++- + +|..
T Consensus 148 ~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~--l-~G~i 190 (223)
T TIGR03771 148 TQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVL--L-NGRV 190 (223)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--E-CCEE
Confidence 99999999998864 67899999998855 67999986 5 6644
No 300
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3e-26 Score=220.01 Aligned_cols=199 Identities=20% Similarity=0.181 Sum_probs=141.2
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~ 99 (264)
.+++.+++.|+|. ++.+|++ |||++.+||+.+ +|||||++++.+. ++.|++++++
T Consensus 7 ~ll~~~~i~K~Fg----gV~AL~~-------------v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G 69 (500)
T COG1129 7 PLLELRGISKSFG----GVKALDG-------------VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG 69 (500)
T ss_pred ceeeeecceEEcC----Cceeecc-------------ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECC
Confidence 3567788889997 4455555 999999999998 9999999999763 5677777777
Q ss_pred HHHHHHHHHhhhH--HHHHHHHHHHHHhhhhh-hhHHHhhcCCCcCCC--CCCch---hhHHHhHHHHcCCCcccccccC
Q psy17516 100 RAKLLKVIEELDE--KKKIALREAWLKVNTDF-GSIFSLLLPGSQAKL--SPPAG---KDILDGLEVNVAFGGLWKESLG 171 (264)
Q Consensus 100 ~~~l~~~I~~l~~--~~~~~~~~~~~~v~~~f-~~vf~~L~~g~~~~l--~~~~~---~~~~~~l~~~v~l~~~~~~~~~ 171 (264)
+. ..-.+. .....+...||..+--- -+|.+++|.|....- ..-+. ...+..++..+++....+..+.
T Consensus 70 ~~-----~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~ 144 (500)
T COG1129 70 KP-----VAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG 144 (500)
T ss_pred EE-----ccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh
Confidence 53 221121 11111111122222110 044455555543211 11121 2345677778888544788999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCc-chHhhccceeEEEe
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKE-GMFSNANVIFRTKF 249 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~-~~~~~ad~l~~v~~ 249 (264)
+||+||||.|+||||++ .+++++|||||||+|+...++.++++++++.. +..+|+|||+. +.++.||++.= |
T Consensus 145 ~LsiaqrQ~VeIArAl~----~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritV--l 218 (500)
T COG1129 145 DLSIAQRQMVEIARALS----FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITV--L 218 (500)
T ss_pred hCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEE--E
Confidence 99999999999999875 58899999999999999999999999999874 78899999995 46799999877 7
Q ss_pred eCCeE
Q psy17516 250 VDGNS 254 (264)
Q Consensus 250 ~~g~s 254 (264)
.||..
T Consensus 219 RDG~~ 223 (500)
T COG1129 219 RDGRV 223 (500)
T ss_pred eCCEE
Confidence 79875
No 301
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-25 Score=199.23 Aligned_cols=184 Identities=16% Similarity=0.118 Sum_probs=122.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----c---cchhHHHhhHHHHHHHHHhhhHHHHHHHHHH----H
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----M---TKKSIVESDRAKLLKVIEELDEKKKIALREA----W 122 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~---~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~----~ 122 (264)
.+++++||++++||+++ ||||||+++++++ + +.|++.+++.. +...+. ....++.. +
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~-----i~~~~~-~~~~~~~~i~~~~ 90 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD-----IYDPAV-DVVELRKKVGMVF 90 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEE-----cccccc-cHHHHhhheEEEe
Confidence 46778999999999997 9999999999765 2 45666666642 221110 01111111 1
Q ss_pred HHhhhhhhhHHHhhcCCCcC-CCCC-CchhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 123 LKVNTDFGSIFSLLLPGSQA-KLSP-PAGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 123 ~~v~~~f~~vf~~L~~g~~~-~l~~-~~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
|...-...++.+++..+... .... ......+..++..+++. +..++++.+|||||+||++|||+++ .+|+
T Consensus 91 q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~----~~p~ 166 (250)
T PRK14266 91 QKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA----VSPE 166 (250)
T ss_pred cCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH----cCCC
Confidence 11110012344443221100 0000 11123345556666663 3457889999999999999998875 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.+...+.++|+++.++.++|+|||+...+ ..||+++- +.+|...
T Consensus 167 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~--l~~G~i~ 224 (250)
T PRK14266 167 VILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSF--FLNGEII 224 (250)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEE--EECCeEE
Confidence 999999999999999999999999987778999999998865 56888876 5577553
No 302
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-25 Score=200.37 Aligned_cols=185 Identities=17% Similarity=0.124 Sum_probs=121.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc-------cchhHHHhhHHHHHHHHHhhhHH-HHHHHHHHHHHh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-------TKKSIVESDRAKLLKVIEELDEK-KKIALREAWLKV 125 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-------~~~~~~~~~~~~l~~~I~~l~~~-~~~~~~~~~~~v 125 (264)
.+++++||+|++||+++ ||||||+++++++. ..|.+.+.+.. +...+.. ....++.....+
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~-----~~~~~~~~~~~~~~~~i~~~ 104 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN-----VNILSPEVDPIEVRMRISMV 104 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcc-----ccccccccCHHHHhccEEEE
Confidence 46778999999999997 99999999997763 35556555432 1100000 001111111011
Q ss_pred hhh---h-hhHHHhhcCCCc-CCCCCC-chhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 126 NTD---F-GSIFSLLLPGSQ-AKLSPP-AGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 126 ~~~---f-~~vf~~L~~g~~-~~l~~~-~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
.+. | .++++++..+.. ...... ..++....++..+++. +..++.+.+|||||+||++|||+++ .+|
T Consensus 105 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~----~~p 180 (265)
T PRK14252 105 FQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALA----TDP 180 (265)
T ss_pred ccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHH----cCC
Confidence 111 1 234444322111 011111 1122334444555553 4557889999999999999998864 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
+++||||||++||+.+...+.++|++++++.++|+|||+.... +.||+++- +.+|...
T Consensus 181 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~--l~~G~i~ 239 (265)
T PRK14252 181 EILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAY--MYMGELI 239 (265)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999999999987778899999998876 68999988 5677653
No 303
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.92 E-value=3.8e-25 Score=218.94 Aligned_cols=180 Identities=23% Similarity=0.267 Sum_probs=122.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
...+++||++++|+.++ ||||||+++++++ +.+|++.+++.+ +.+++.. .++.....+.++
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-----~~~~~~~---~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID-----INTVTRE---SLRKSIATVFQDAGL 420 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEE-----hhhCCHH---HHHhheEEEccCCcc
Confidence 46788999999999998 9999999998664 346666666642 4444422 233222222222
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHH--hHHH---Hc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILD--GLEV---NV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~--~l~~---~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
| +++.+++..+... ...++..+.+. ++.. .+ |+..........||||||||++|||++ +++|+++||
T Consensus 421 f~~ti~~Ni~~~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal----l~~p~ilil 495 (585)
T TIGR01192 421 FNRSIRENIRLGREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI----LKNAPILVL 495 (585)
T ss_pred CcccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH----hcCCCEEEE
Confidence 1 3444444433211 00000001110 1111 11 223334566789999999999999886 579999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||||++||+.+...+.+.|.++.++.++|+||||..++..||+++- +++|..
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~--l~~G~i 547 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLF--LDQGRL 547 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEE--EECCEE
Confidence 9999999999999999999988778899999999999999999988 678864
No 304
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.92 E-value=9.7e-26 Score=189.39 Aligned_cols=138 Identities=20% Similarity=0.167 Sum_probs=102.7
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||++++|++++ ||||||+++++++. ..|.+.+.+. +.+++
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--------------------------~~i~~ 68 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--------------------------EDLLF 68 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--------------------------ceEEE
Confidence 46778999999999998 99999999997763 3344433220 22444
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
++|... +.. ....+.+.. . .+.+||||||||++|||+++ .+|+++++||||++||+.+
T Consensus 69 ~~q~~~------~~~---~tv~~nl~~--~-------~~~~LS~G~~~rv~laral~----~~p~~lllDEPt~~LD~~~ 126 (166)
T cd03223 69 LPQRPY------LPL---GTLREQLIY--P-------WDDVLSGGEQQRLAFARLLL----HKPKFVFLDEATSALDEES 126 (166)
T ss_pred ECCCCc------ccc---ccHHHHhhc--c-------CCCCCCHHHHHHHHHHHHHH----cCCCEEEEECCccccCHHH
Confidence 444311 000 011122210 1 47899999999999998864 7899999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEE
Q psy17516 212 TQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRT 247 (264)
Q Consensus 212 ~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v 247 (264)
+..+.++|+++ +.++|+|||+......||+++-+
T Consensus 127 ~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l 160 (166)
T cd03223 127 EDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDL 160 (166)
T ss_pred HHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEE
Confidence 99999999986 47899999999888899999873
No 305
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=8.3e-26 Score=243.15 Aligned_cols=175 Identities=19% Similarity=0.213 Sum_probs=129.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
..++++||+|++||.++ ||||||++++.++ +++|.+.++|.+ |.+++. ..+|..+..|+|+.
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~d-----i~~i~~---~~lR~~i~iVpQdp~L 1321 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD-----VAKFGL---TDLRRVLSIIPQSPVL 1321 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEE-----hhhCCH---HHHHhhcEEECCCCee
Confidence 46789999999999998 9999999988654 456778887753 666653 33554443344431
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-----------cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-----------GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-----------~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+++.+++.++... . ++.+...+..+++. .........||||||||+|||||+ +++|+
T Consensus 1322 F~gTIr~NL~~~~~~-----s-deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL----Lr~~~ 1391 (1495)
T PLN03232 1322 FSGTVRFNIDPFSEH-----N-DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL----LRRSK 1391 (1495)
T ss_pred eCccHHHHcCCCCCC-----C-HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH----HhCCC
Confidence 4555566554311 1 11122222333332 222344568999999999999886 57899
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++|||||||+||..+...|.+.|++..++.|+|+||||..++..||+++- |++|..
T Consensus 1392 ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlV--L~~G~i 1447 (1495)
T PLN03232 1392 ILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILV--LSSGQV 1447 (1495)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999988788999999999999999999998 778865
No 306
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=2.1e-25 Score=200.79 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=121.7
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
+.+++++||++++|++++ ||||||+++++++ +..|.+.+.+. +..... ...+ ... .
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~------~~~~~~--~~~~-------~~~-~ 100 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE------VSVIAI--SAGL-------SGQ-L 100 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE------EeEEec--ccCC-------CCC-C
Confidence 346778999999999997 9999999999876 34555555442 100000 0000 000 1
Q ss_pred hHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++++++..+.. ..............++..+++.+..++++.+|||||+||++||++++ .+|+++||||||++||+
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~----~~p~iLlLDEPt~gLD~ 176 (264)
T PRK13546 101 TGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINIT----VNPDILVIDEALSVGDQ 176 (264)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHh----hCCCEEEEeCccccCCH
Confidence 33433321100 01111111223455666778888888999999999999999998864 68899999999999999
Q ss_pred HHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 210 SHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
..+..+.++|.++.+ +.++|+|||+...+ +.||+++- +.+|..
T Consensus 177 ~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~--l~~G~i 221 (264)
T PRK13546 177 TFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAW--IEGGKL 221 (264)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEE--EECCEE
Confidence 999999999998764 67999999998876 57999977 668764
No 307
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7e-26 Score=221.60 Aligned_cols=168 Identities=17% Similarity=0.202 Sum_probs=119.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||+|++|++++ ||||||+++++++. +.|.+.+.+.. .+.-+ +|.....|
T Consensus 333 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~----~i~~~-----------~q~~~~~~~~ 397 (530)
T PRK15064 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA----NIGYY-----------AQDHAYDFEN 397 (530)
T ss_pred eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce----EEEEE-----------cccccccCCC
Confidence 46789999999999997 99999999997763 45555444321 01000 01100001
Q ss_pred -hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 130 -GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 130 -~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
.++++.+.... .....+..+..++..+++. +..++++.+||||||||++||++++ .+|+++||||||++|
T Consensus 398 ~~t~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~----~~p~lllLDEPt~~L 469 (530)
T PRK15064 398 DLTLFDWMSQWR----QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM----QKPNVLVMDEPTNHM 469 (530)
T ss_pred CCcHHHHHHHhc----cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCC
Confidence 12333221100 0111123456677788884 6778999999999999999998864 789999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 208 DLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|+.+...+.++|+++ ++++|+|||+...+ ..||+++- +.+|..
T Consensus 470 D~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~--l~~g~i 513 (530)
T PRK15064 470 DMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIE--ITPDGV 513 (530)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEE--EECCeE
Confidence 999999999999987 45899999999876 46999988 567764
No 308
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=3.2e-26 Score=225.40 Aligned_cols=94 Identities=23% Similarity=0.313 Sum_probs=81.2
Q ss_pred HHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEE
Q psy17516 152 ILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231 (264)
Q Consensus 152 ~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiV 231 (264)
.+..++..+|++. .++++.+|||||||||+||+++ +.+|+++||||||++||+.+...+.++|+++. .++|+|
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al----~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviii 216 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLL----LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAV 216 (556)
T ss_pred HHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHH----hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEE
Confidence 4556677888864 6889999999999999999886 47899999999999999999999999999874 589999
Q ss_pred EeCcchH-hhccceeEEEeeCCeE
Q psy17516 232 SLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 232 TH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||+...+ ..||+++- +++|..
T Consensus 217 sHd~~~~~~~~d~i~~--l~~g~i 238 (556)
T PRK11819 217 THDRYFLDNVAGWILE--LDRGRG 238 (556)
T ss_pred eCCHHHHHhhcCeEEE--EeCCEE
Confidence 9999876 56999988 668864
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=2e-25 Score=207.50 Aligned_cols=204 Identities=19% Similarity=0.195 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHhhcccccccccc-hhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhh-hccchhHHH
Q psy17516 26 KKAQLSLRNEENQFKVGAMVKAP-LKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISME-AMTKKSIVE 97 (264)
Q Consensus 26 ~~a~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~-l~~~~~~~~ 97 (264)
-..+++.+++...|.++..-..+ .+. -..-+++||++++|+.++ ||||||-..+.. ++++|.+.+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~-------~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F 345 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDH-------LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRF 345 (534)
T ss_pred CCceEEecceEEEEecCCccccccchh-------eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEE
Confidence 34556666666666655211111 111 123457999999999987 999999876654 455666666
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh----hcCCCc----------CC---CCCCchhhHHHhHHHHc
Q psy17516 98 SDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL----LLPGSQ----------AK---LSPPAGKDILDGLEVNV 160 (264)
Q Consensus 98 ~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~----L~~g~~----------~~---l~~~~~~~~~~~l~~~v 160 (264)
.|. .|..++.+....+|+. ++-|||. |.|-.+ .. ++..+.++.+...+..|
T Consensus 346 ~G~-----~i~~~~~~~mrplR~~-------mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV 413 (534)
T COG4172 346 DGQ-----DIDGLSRKEMRPLRRR-------MQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413 (534)
T ss_pred CCc-----cccccChhhhhhhhhh-------ceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc
Confidence 664 3777877776666643 3444443 222211 11 11222334566777889
Q ss_pred CCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch
Q psy17516 161 AFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM 237 (264)
Q Consensus 161 ~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~ 237 (264)
|++ .-++++|++.|||||||+|||||++ -.|.|++||||||+||..-+..|.++|+++.+ +-..++||||...
T Consensus 414 GLDp~~r~RYPhEFSGGQRQRIAIARAli----LkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V 489 (534)
T COG4172 414 GLDPATRNRYPHEFSGGQRQRIAIARALI----LKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV 489 (534)
T ss_pred CCChhHhhcCCcccCcchhhHHHHHHHHh----cCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence 996 4779999999999999999999874 46799999999999999999999999999875 6789999999988
Q ss_pred H-hhccceeEEEeeCCeE
Q psy17516 238 F-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 238 ~-~~ad~l~~v~~~~g~s 254 (264)
. ..||+++- |.+|..
T Consensus 490 vrAl~~~viV--m~~Gki 505 (534)
T COG4172 490 VRALCHRVIV--MRDGKI 505 (534)
T ss_pred HHHhhceEEE--EeCCEE
Confidence 7 46998887 778864
No 310
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-25 Score=200.62 Aligned_cols=180 Identities=17% Similarity=0.125 Sum_probs=117.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhcc-------chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-------KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-------~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
.+++++||++++|++++ ||||||+++++++.. .|.+.+.+.. +.... .....++.....+.
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~-----i~~~~-~~~~~~~~~i~~~~ 94 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN-----IYERR-VNLNRLRRQVSMVH 94 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEE-----hhccc-cchHHhhccEEEEe
Confidence 35678999999999998 999999999977643 2333333321 11100 00011111100001
Q ss_pred hh---h-hhHHHhhcCCCc-CCCCCC-chhhHHHhHHHHcCCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 127 TD---F-GSIFSLLLPGSQ-AKLSPP-AGKDILDGLEVNVAFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 127 ~~---f-~~vf~~L~~g~~-~~l~~~-~~~~~~~~l~~~v~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+. | .++++++..+.. ...... +.......++..+++. +..++++.+|||||+||++|||+++ .+|+
T Consensus 95 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~----~~p~ 170 (261)
T PRK14258 95 PKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA----VKPK 170 (261)
T ss_pred cCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh----cCCC
Confidence 11 1 233333321110 001011 1122345566677764 3567889999999999999998864 7889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCcchH-hhccceeEEEeeC
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKEGMF-SNANVIFRTKFVD 251 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~~~~-~~ad~l~~v~~~~ 251 (264)
++||||||++||+.+...+.++|++++ .+.++|+|||+...+ +.||+++- |++
T Consensus 171 vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~--l~~ 226 (261)
T PRK14258 171 VLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAF--FKG 226 (261)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEE--Ecc
Confidence 999999999999999999999999875 378999999998876 67999988 667
No 311
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=3.4e-25 Score=198.61 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=115.9
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc--cchhHH-----------HhhHHHHHHHHHhhhHHHHH-HHH-
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIV-----------ESDRAKLLKVIEELDEKKKI-ALR- 119 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~-----------~~~~~~l~~~I~~l~~~~~~-~~~- 119 (264)
.++++|+ +++|++++ ||||||+++++++. +.|.+. +.+.. +.......+. ..+
T Consensus 16 ~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~i 89 (255)
T cd03236 16 KLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE-----LQNYFTKLLEGDVKV 89 (255)
T ss_pred hhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCch-----hhhhhHHhhhcccce
Confidence 4567884 99999998 99999999997754 345442 22321 2211110000 000
Q ss_pred -HHHHHhhhhhhhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 120 -EAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 120 -~~~~~v~~~f~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
..++.+...-..+...+... +...........++..+|+.+..++.+.+||||||||++|||+++ .+|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~----~~p~il 161 (255)
T cd03236 90 IVKPQYVDLIPKAVKGKVGEL----LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA----RDADFY 161 (255)
T ss_pred eeecchhccCchHHHHHHHHH----hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH----hCCCEE
Confidence 00111111101111111111 111122234567777889988888999999999999999998875 688999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRT 247 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v 247 (264)
++||||++||+.++..+.++|+++.+ +.++|+|||+...+. .||+++-+
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l 212 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL 212 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99999999999999999999998865 678999999988776 69999874
No 312
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=1.1e-25 Score=243.09 Aligned_cols=175 Identities=19% Similarity=0.231 Sum_probs=129.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
..++++||+|++||.++ ||||||++++..+ +++|.+.++|.+ |..++. ..+|..+..|+|.
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~d-----I~~i~l---~~LR~~IsiVpQdp~L 1324 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCD-----ISKFGL---MDLRKVLGIIPQAPVL 1324 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEe-----cccCCH---HHHHhccEEECCCCcc
Confidence 46778999999999998 9999999988654 456778887753 666653 3345433333333
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-----------cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-----------GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-----------~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
| |+|.+++.++... . ++.+...+..+++. .........||||||||+|||||+ +++|+
T Consensus 1325 F~GTIreNLd~~~~~-----t-deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL----Lr~p~ 1394 (1622)
T PLN03130 1325 FSGTVRFNLDPFNEH-----N-DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL----LRRSK 1394 (1622)
T ss_pred ccccHHHHhCcCCCC-----C-HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH----HcCCC
Confidence 2 4566666554321 1 11122223333332 222334568999999999999876 57899
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++|||||||+||..+...|.+.|++..++.|+|+|+||..++..||+++- |++|..
T Consensus 1395 ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlV--Ld~G~I 1450 (1622)
T PLN03130 1395 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILV--LDAGRV 1450 (1622)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999998888999999999999999999998 779875
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.1e-26 Score=222.01 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=81.4
Q ss_pred HHHhHHHHcCCCccc-ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEE
Q psy17516 152 ILDGLEVNVAFGGLW-KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230 (264)
Q Consensus 152 ~~~~l~~~v~l~~~~-~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~Ii 230 (264)
.+..++..+|+.+.. ++++.+|||||||||+||+++ +.+|+++||||||++||+.++..+.++|++ .+.++|+
T Consensus 134 ~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiii 207 (530)
T PRK15064 134 RAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQAL----FSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMII 207 (530)
T ss_pred HHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHH----hcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEE
Confidence 455677788997643 568899999999999999886 478899999999999999999999999975 3678999
Q ss_pred EEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 231 VSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 231 VTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|||+...+ +.||+++- +++|...
T Consensus 208 vsHd~~~~~~~~d~i~~--l~~g~i~ 231 (530)
T PRK15064 208 ISHDRHFLNSVCTHMAD--LDYGELR 231 (530)
T ss_pred EeCCHHHHHhhcceEEE--EeCCEEE
Confidence 99998876 67999988 6688653
No 314
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-26 Score=227.77 Aligned_cols=188 Identities=16% Similarity=0.173 Sum_probs=120.7
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHH---HHHHHhhhHHHHHHHHH---HHHH
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKL---LKVIEELDEKKKIALRE---AWLK 124 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l---~~~I~~l~~~~~~~~~~---~~~~ 124 (264)
+.+++++||+|++|++++ |||||||++|+++ ++.|.+.+.+...+ .+............... .+..
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~ 93 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ 93 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence 356788999999999998 9999999999775 44566555442100 00000000000000000 0000
Q ss_pred hhhhh--------hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 125 VNTDF--------GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 125 v~~~f--------~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+...+ ..-|..+..... ..........+..++..+|+. +..++++.+|||||||||+||++| +.+|
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL----~~~P 168 (638)
T PRK10636 94 LEAQLHDANERNDGHAIATIHGKLD-AIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQAL----ICRS 168 (638)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHH-hcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHH----ccCC
Confidence 00000 000000000000 000111223456777888996 567899999999999999999876 5789
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
+++||||||++||+.++..+.++|+++ ++++|+||||...+ ..||+++. +++|...
T Consensus 169 ~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~--L~~G~i~ 225 (638)
T PRK10636 169 DLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIH--IEQQSLF 225 (638)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEE--EeCCEEE
Confidence 999999999999999999999999886 46899999998876 57999998 6688654
No 315
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=3.1e-25 Score=215.00 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=123.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||++++|++++ ||||||+++++++ +.+|.+.+.+... . +. +... .... -+
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----~--i~------~~~~---l~~~-lT 101 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----L--IA------ISSG---LNGQ-LT 101 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----e--EE------eccc---cCCC-Cc
Confidence 46788999999999997 9999999999775 3456666555320 0 00 0000 0011 13
Q ss_pred HHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHH
Q psy17516 132 IFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210 (264)
Q Consensus 132 vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~ 210 (264)
+++.+..... ..............++..+++.+..++++.+||||||||++|||+++ .+|+++||||||++||+.
T Consensus 102 V~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~----~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 102 GIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVH----INPDILVIDEALSVGDQT 177 (549)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHH----hCCCEEEEECCcccCCHH
Confidence 4444321110 11111111233456677889988889999999999999999998875 688999999999999999
Q ss_pred HHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 211 HTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 211 ~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
++..+.++|+++.+ +.++|+|||+...+ ..||+++- +.+|..
T Consensus 178 sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIiv--L~~GkI 221 (549)
T PRK13545 178 FTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALW--LHYGQV 221 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE--EECCEE
Confidence 99999999998764 67899999998876 56999987 668865
No 316
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.92 E-value=7.9e-25 Score=188.11 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=110.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc----cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM----TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~----~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+++++||++++|++++ ||||||+++++++. ..|++.+++.. +.. ..+ ...+
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~-----~~~------~~~-------~~~i 84 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP-----LDK------RSF-------RKII 84 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEe-----Cch------Hhh-------hheE
Confidence 46778999999999998 99999999997754 35666665542 211 011 2345
Q ss_pred hhHHHh--hcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 130 GSIFSL--LLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 130 ~~vf~~--L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
+++|+. ++++.+. .+.+.... ...+|||||+||++|||+++ .+|+++|+||||++|
T Consensus 85 ~~~~q~~~~~~~~t~----------~~~i~~~~--------~~~~LS~G~~qrv~laral~----~~p~illlDEP~~~L 142 (194)
T cd03213 85 GYVPQDDILHPTLTV----------RETLMFAA--------KLRGLSGGERKRVSIALELV----SNPSLLFLDEPTSGL 142 (194)
T ss_pred EEccCcccCCCCCcH----------HHHHHHHH--------HhccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcCC
Confidence 566654 2222111 11111000 01289999999999998875 688999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CCeEEEEEeCcc--hHhhccceeEEEeeCCeE
Q psy17516 208 DLSHTQNIGQMLKRHFK-TSQFIIVSLKEG--MFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~-~~q~IiVTH~~~--~~~~ad~l~~v~~~~g~s 254 (264)
|+.++..+.++|+++.+ +.++|+|||+.. ..+.||+++- +++|..
T Consensus 143 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~--l~~G~i 190 (194)
T cd03213 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL--LSQGRV 190 (194)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEE--EeCCEE
Confidence 99999999999998864 678999999985 4578999988 668754
No 317
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.92 E-value=6.4e-25 Score=191.51 Aligned_cols=169 Identities=12% Similarity=0.078 Sum_probs=114.7
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHH-HhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIV-ESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~-~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.++++||+|++|++++ ||||||+++++++ +.+|++. +.+.. + .+.. ...+ ... -+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~-----~-~~~~--~~~l-------~~~-lt 65 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA-----L-PLGA--NSFI-------LPG-LT 65 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce-----e-cccc--cccc-------CCc-Cc
Confidence 4568999999999998 9999999999775 3455553 33321 1 0110 0000 000 13
Q ss_pred HHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHH
Q psy17516 132 IFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210 (264)
Q Consensus 132 vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~ 210 (264)
+.+++..... ... ........+...+++++..++++..||||||||++||++++ .+|+++|+|||+++||+.
T Consensus 66 v~enl~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~----~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 66 GEENARMMASLYGL---DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLL----LPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHh----cCCCEEEECCCCccCCHH
Confidence 3333211100 011 11122233334457777788899999999999999998864 688999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 211 HTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 211 ~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+...+.+++.+..++.++|+|||+...+ ..||+++- |.+|..
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~--l~~G~i 181 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGV--LLHGKI 181 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEE--EECCeE
Confidence 9999999886544456799999999877 57999987 668764
No 318
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=2.3e-25 Score=240.18 Aligned_cols=190 Identities=19% Similarity=0.191 Sum_probs=135.5
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
.+++++..+|..+ .+..++++||+|++||.++ ||||||++++.++ +++|.++++|.+
T Consensus 1309 I~f~nVsf~Y~~~---------------~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1309 LVFEGVQMRYREG---------------LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGRE 1373 (1560)
T ss_pred EEEEEEEEEeCCC---------------CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 4566667777522 1235678999999999998 9999999988664 456778887764
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhh----hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcc-------cc---
Q psy17516 102 KLLKVIEELDEKKKIALREAWLKVNTDF----GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGL-------WK--- 167 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~~~v~~~f----~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~-------~~--- 167 (264)
|..++. ..+|..+..|+|+. ++|.+++-|+..+ .++.+...+..+++.+. .+
T Consensus 1374 -----i~~i~l---~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~------sdeeI~~Al~~a~l~~~I~~lp~Gldt~v 1439 (1560)
T PTZ00243 1374 -----IGAYGL---RELRRQFSMIPQDPVLFDGTVRQNVDPFLEA------SSAEVWAALELVGLRERVASESEGIDSRV 1439 (1560)
T ss_pred -----cccCCH---HHHHhcceEECCCCccccccHHHHhCcccCC------CHHHHHHHHHHCCChHHHhhCcccccccc
Confidence 666653 34554443333331 3444455433211 11223333444454322 22
Q ss_pred -cccCCCCHHHHHHHHHHHHHHHhhcC-CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhcccee
Q psy17516 168 -ESLGELSGGQRSLVALSLVLAMLLFK-PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 168 -~~~~~LSGGekqrvaiA~~la~~l~~-~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~ 245 (264)
.....||||||||+|||||| ++ +|+++|||||||+||+++...|.+.|++..++.|+|+||||..++..||+++
T Consensus 1440 ge~G~nLSgGQrQrLaLARAL----L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl 1515 (1560)
T PTZ00243 1440 LEGGSNYSVGQRQLMCMARAL----LKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKII 1515 (1560)
T ss_pred cCCcCcCCHHHHHHHHHHHHH----hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEE
Confidence 33468999999999999886 45 5899999999999999999999999998877899999999999999999999
Q ss_pred EEEeeCCeE
Q psy17516 246 RTKFVDGNS 254 (264)
Q Consensus 246 ~v~~~~g~s 254 (264)
- |++|..
T Consensus 1516 V--Ld~G~V 1522 (1560)
T PTZ00243 1516 V--MDHGAV 1522 (1560)
T ss_pred E--EECCEE
Confidence 8 778865
No 319
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.91 E-value=5.8e-25 Score=203.38 Aligned_cols=166 Identities=18% Similarity=0.099 Sum_probs=112.4
Q ss_pred chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-hhHHHhhcCCCcC-CCCCCchhhH
Q psy17516 77 APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-GSIFSLLLPGSQA-KLSPPAGKDI 152 (264)
Q Consensus 77 sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~~vf~~L~~g~~~-~l~~~~~~~~ 152 (264)
||||||+++++++ ++.|.+.+++.. +......+ ..+.-.+|...... .++++++..+... .....+....
T Consensus 7 sGKSTLl~~iaGl~~p~~G~I~i~g~~-----i~~~~~~~-~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 7 CGKTTLLRLLAGFEQPDSGSIMLDGED-----VTNVPPHL-RHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CCHHHHHHHHHCCCCCCceEEEECCEE-----CCCCCHHH-CCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 9999999999875 346666666642 32222111 00000111111000 1334433211110 1111111234
Q ss_pred HHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEE
Q psy17516 153 LDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFII 230 (264)
Q Consensus 153 ~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~Ii 230 (264)
...++..+++.+..++++.+|||||||||+|||+++ .+|+++||||||++||+.++..+.++|+++.+ +.++|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~----~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALV----FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 566777889998899999999999999999998875 68899999999999999999999999998764 678999
Q ss_pred EEeCcchH-hhccceeEEEeeCCeE
Q psy17516 231 VSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 231 VTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|||+...+ ..||+++- |++|..
T Consensus 157 vTHd~~e~~~~~d~i~v--l~~G~i 179 (325)
T TIGR01187 157 VTHDQEEAMTMSDRIAI--MRKGKI 179 (325)
T ss_pred EeCCHHHHHHhCCEEEE--EECCEE
Confidence 99998764 67999988 668865
No 320
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=8.4e-25 Score=237.45 Aligned_cols=182 Identities=15% Similarity=0.097 Sum_probs=130.0
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+.+.+++||++++||+++ ||||||++++.++ ++.|++.+.|.+ +.. ....+++....+.++.
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~d-----I~~----~~~~~r~~IG~~pQ~~~ 1013 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD-----IET----NLDAVRQSLGMCPQHNI 1013 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEE-----Ccc----hHHHHhhcEEEEecCCc
Confidence 345678999999999997 9999999999776 456777666642 211 1112221111111111
Q ss_pred ----hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 130 ----GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 130 ----~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
-++.+.+..+.. .+....+.++.+..++..+|+.++.++++.+||||||||++||+||+ .+|+++||||||
T Consensus 1014 L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi----~~PkVLLLDEPT 1089 (2272)
T TIGR01257 1014 LFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV----GDAKVVVLDEPT 1089 (2272)
T ss_pred CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCC
Confidence 023333211100 01111112234567788899999999999999999999999998864 789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHh-hccceeEEEeeCCeEE
Q psy17516 205 AALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFS-NANVIFRTKFVDGNSN 255 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s~ 255 (264)
+|||+.++..+.++|+++.++.++|++||+...++ .||+++- |.+|...
T Consensus 1090 SGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~i--L~~GkL~ 1139 (2272)
T TIGR01257 1090 SGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAI--ISQGRLY 1139 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999877789999999988875 6999987 6688654
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-24 Score=217.80 Aligned_cols=172 Identities=20% Similarity=0.269 Sum_probs=119.4
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
+.+++++||+|++|++++ |||||||++++++ +++|.+.+.+.. .+.-+.+.....+ ... .
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----~igy~~Q~~~~~l-------~~~-~ 392 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI----KLGYFAQHQLEFL-------RAD-E 392 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCE----EEEEecCcchhhC-------Ccc-c
Confidence 357889999999999998 9999999999775 345554433210 0111110000000 000 0
Q ss_pred hHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++++.+.. .........+..++..+++.+ ..++++..|||||||||+||+++ +.+|+++||||||++||+
T Consensus 393 ~~~~~~~~-----~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l----~~~p~lLlLDEPt~~LD~ 463 (638)
T PRK10636 393 SPLQHLAR-----LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIV----WQRPNLLLLDEPTNHLDL 463 (638)
T ss_pred hHHHHHHH-----hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHH----hcCCCEEEEcCCCCCCCH
Confidence 12222110 001111234566777889864 67889999999999999999886 479999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
.+...+.++|+++ ++++|+||||...+ ..||+++- |.+|...
T Consensus 464 ~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~--l~~G~i~ 506 (638)
T PRK10636 464 DMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYL--VHDGKVE 506 (638)
T ss_pred HHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999987 35899999999877 57999988 5688653
No 322
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.91 E-value=4.1e-25 Score=238.17 Aligned_cols=175 Identities=21% Similarity=0.215 Sum_probs=128.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
..++++||+|++||.++ ||||||++++..+ +++|.+.++|.+ |..++. ..+|..+..|+|+
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d-----I~~i~~---~~LR~~i~iVpQdp~L 1371 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN-----IAKIGL---HDLRFKITIIPQDPVL 1371 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE-----ccccCH---HHHHhcCeEECCCCcc
Confidence 46789999999999998 9999999988654 456778888764 666653 3455433333333
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC-------Ccccc----cccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF-------GGLWK----ESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l-------~~~~~----~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
| ++|.+++-|.+.+ ..++ +...+..+++ ++..+ .....||||||||+|||||+ +++|+
T Consensus 1372 F~gTIr~NLdp~~~~-----sdee-i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL----Lr~~~ 1441 (1522)
T TIGR00957 1372 FSGSLRMNLDPFSQY-----SDEE-VWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL----LRKTK 1441 (1522)
T ss_pred cCccHHHHcCcccCC-----CHHH-HHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH----HcCCC
Confidence 1 3555555443211 1112 2223333443 22233 34467999999999999876 57999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++|||||||+||.++...|.+.|++..++.|+|+||||..++..||+++- |++|..
T Consensus 1442 ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlV--ld~G~I 1497 (1522)
T TIGR00957 1442 ILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIV--LDKGEV 1497 (1522)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999988888999999999999999999998 778875
No 323
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=2.2e-25 Score=220.81 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=117.4
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-hhH
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-GSI 132 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~~v 132 (264)
++++||+|++||+++ ||||||+++++++. +.|.+.+. . .+.- .+|.....+ .+|
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~-----~i~y-----------~~Q~~~~~~~~tv 417 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L-----KISY-----------KPQYIKPDYDGTV 417 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e-----eEEE-----------ecccccCCCCCcH
Confidence 567999999999997 99999999997753 34444322 0 0100 011111111 245
Q ss_pred HHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHH
Q psy17516 133 FSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT 212 (264)
Q Consensus 133 f~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~ 212 (264)
++.+..+... .. .......++..+++.+..++++.+|||||||||+||++++ ++|++|||||||++||+.++
T Consensus 418 ~e~l~~~~~~-~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~----~~p~llLLDEPt~~LD~~~~ 489 (590)
T PRK13409 418 EDLLRSITDD-LG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLS----RDADLYLLDEPSAHLDVEQR 489 (590)
T ss_pred HHHHHHHhhh-cC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHH
Confidence 5544322111 11 1123456777889988889999999999999999998864 79999999999999999999
Q ss_pred HHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEE
Q psy17516 213 QNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 213 ~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v 247 (264)
..+.++|+++++ +.++|+||||...+ ..||+++-+
T Consensus 490 ~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 490 LAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999864 67899999998876 579998873
No 324
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=1.4e-24 Score=219.04 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=82.1
Q ss_pred HHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEE
Q psy17516 152 ILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230 (264)
Q Consensus 152 ~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~Ii 230 (264)
.+..++..+|+. +..++++.+|||||||||+||+++ +.+|+++||||||++||+.++.++.++|+++ +.++||
T Consensus 323 r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL----~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tvii 396 (718)
T PLN03073 323 RAASILAGLSFTPEMQVKATKTFSGGWRMRIALARAL----FIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIV 396 (718)
T ss_pred HHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHH----hcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEE
Confidence 345566677885 456788999999999999999876 4788999999999999999999999999886 578999
Q ss_pred EEeCcchHh-hccceeEEEeeCCeEEE
Q psy17516 231 VSLKEGMFS-NANVIFRTKFVDGNSNV 256 (264)
Q Consensus 231 VTH~~~~~~-~ad~l~~v~~~~g~s~i 256 (264)
|||+...+. .||+++. +++|....
T Consensus 397 vsHd~~~l~~~~d~i~~--l~~g~i~~ 421 (718)
T PLN03073 397 VSHAREFLNTVVTDILH--LHGQKLVT 421 (718)
T ss_pred EECCHHHHHHhCCEEEE--EECCEEEE
Confidence 999988774 5999988 66886543
No 325
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.91 E-value=1.5e-25 Score=223.81 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=81.3
Q ss_pred hHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEE
Q psy17516 151 DILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230 (264)
Q Consensus 151 ~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~Ii 230 (264)
..+..++..+|+. .++++.+|||||||||+||+++ +.+|+++||||||++||+.++..+.++|+++. .++|+
T Consensus 137 ~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL----~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvli 208 (635)
T PRK11147 137 NRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRAL----VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIF 208 (635)
T ss_pred HHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHH----hcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEE
Confidence 3456677778886 3788999999999999999886 47899999999999999999999999999874 58999
Q ss_pred EEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 231 VSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 231 VTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
||||...+ ..||+++. +++|...
T Consensus 209 vsHd~~~l~~~~d~i~~--L~~G~i~ 232 (635)
T PRK11147 209 ISHDRSFIRNMATRIVD--LDRGKLV 232 (635)
T ss_pred EeCCHHHHHHhcCeEEE--EECCEEE
Confidence 99998877 56999998 6688653
No 326
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1e-24 Score=182.84 Aligned_cols=176 Identities=17% Similarity=0.256 Sum_probs=124.9
Q ss_pred ccccceeeeccceee------chhhHHHHhh--hhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHH
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFIS--MEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIF 133 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l--~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf 133 (264)
..++||+|+.||.+. +||||||+++ ..+++.|.+++.-..+..+.. ..+..+--..|+ +.+|+|-
T Consensus 27 ~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~-~a~pr~vl~vRr------~TiGyVS 99 (235)
T COG4778 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLV-TAEPREVLEVRR------TTIGYVS 99 (235)
T ss_pred eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhh-ccChHHHHHHHH------hhhHHHH
Confidence 347999999999997 9999999998 346777766665544322222 222222222332 2344444
Q ss_pred Hh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 134 SL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 134 ~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
|. .+|.-.+ +...+.....+..++.++.+++ .|.-.|...||||+|||.|||.|. -+-|+++
T Consensus 100 QFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfi----vd~pILL 175 (235)
T COG4778 100 QFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFI----VDYPILL 175 (235)
T ss_pred HHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhh----ccCceEE
Confidence 43 2222111 1122223345678888999876 567789999999999999999984 5779999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcchHh-hccceeEEE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGMFS-NANVIFRTK 248 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~~-~ad~l~~v~ 248 (264)
||||||+||..|+..+.++|.+.. +++.+|=|=||++.-+ .|||++.++
T Consensus 176 LDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 176 LDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred ecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999865 4677888999988764 699999865
No 327
>KOG0055|consensus
Probab=99.91 E-value=9.8e-25 Score=224.78 Aligned_cols=202 Identities=19% Similarity=0.244 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHH
Q psy17516 25 DKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIV 96 (264)
Q Consensus 25 n~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~ 96 (264)
+.+--.+++++.+.|..+ +...++++.||+|++|+.+| |||||...++.-. |..|.+.
T Consensus 983 ~~~G~I~~~~V~F~YPsR--------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTR--------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred cceeEEEEeeeEeeCCCC--------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 344456788899999866 23567778999999999998 9999999887433 4566777
Q ss_pred HhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---h-hhHHHhhcCCCcCCCCCCchh---hHHHhHHHHcCCCccccc-
Q psy17516 97 ESDRAKLLKVIEELDEKKKIALREAWLKVNTD---F-GSIFSLLLPGSQAKLSPPAGK---DILDGLEVNVAFGGLWKE- 168 (264)
Q Consensus 97 ~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f-~~vf~~L~~g~~~~l~~~~~~---~~~~~l~~~v~l~~~~~~- 168 (264)
+++.+ |.+++- ..+|....-|.|+ | ++|.+++.-|... ....+.. +.+..-....++|.-.+.
T Consensus 1049 IDg~d-----ik~lnl---~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1049 IDGVD-----IKDLNL---KWLRKQIGLVSQEPVLFNGTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTR 1119 (1228)
T ss_pred ECCcc-----cccCCH---HHHHHhcceeccCchhhcccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCc
Confidence 76653 766663 3455544344443 3 4777777766221 1111111 111111223356655554
Q ss_pred ---ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhcccee
Q psy17516 169 ---SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 169 ---~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~ 245 (264)
...+||||||||+|||||+ +++|+++||||.|||||.++...|-+.|.+...+.|.|+|+||..++..||.|+
T Consensus 1120 vGerG~QLSGGQKQRIAIARAi----lRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~ 1195 (1228)
T KOG0055|consen 1120 VGERGVQLSGGQKQRIAIARAI----LRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIA 1195 (1228)
T ss_pred cCcccCcCCchHHHHHHHHHHH----HcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEE
Confidence 4569999999999998875 689999999999999999999999999999888999999999999999999998
Q ss_pred EEEeeCCeEE
Q psy17516 246 RTKFVDGNSN 255 (264)
Q Consensus 246 ~v~~~~g~s~ 255 (264)
= +.+|+..
T Consensus 1196 V--i~~G~Vv 1203 (1228)
T KOG0055|consen 1196 V--LKNGKVV 1203 (1228)
T ss_pred E--EECCEEE
Confidence 7 5688753
No 328
>KOG0018|consensus
Probab=99.91 E-value=1.2e-23 Score=211.52 Aligned_cols=204 Identities=24% Similarity=0.364 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhHHHHh
Q psy17516 6 VTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRTLLFI 85 (264)
Q Consensus 6 ~~~~~~~l~~~~~~l~~~vn~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKSTLl~~ 85 (264)
++++|.+.++.++++ .+|++|+..++.++ |.
T Consensus 934 L~~kl~e~~~~l~~~--~Pn~kA~~~~d~v~--~~--------------------------------------------- 964 (1141)
T KOG0018|consen 934 LQQKLEEKQSVLNRI--APNLKALERLDEVR--FQ--------------------------------------------- 964 (1141)
T ss_pred HHHHHHHHHHHHHHh--CcchHHHhhhhhHH--HH---------------------------------------------
Confidence 578899999999999 69999999999998 54
Q ss_pred hhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcC-CCcCCCCCCchh-hHHHhHHHHcCCC
Q psy17516 86 SMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLP-GSQAKLSPPAGK-DILDGLEVNVAFG 163 (264)
Q Consensus 86 l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~-g~~~~l~~~~~~-~~~~~l~~~v~l~ 163 (264)
......+........+......+..++...|..+|+.|+.++..||..|.+ .++|.+.+.+.+ +++.|+-..+-||
T Consensus 965 --~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~Ltnt~g~AyL~~en~~EPyl~GIky~~~pP 1042 (1141)
T KOG0018|consen 965 --EINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYKELTNTEGQAYLGLENPEEPYLDGIKYHCMPP 1042 (1141)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeecCCCCCcchhcCccccccCC
Confidence 122222222222333344577777778889999999999999999998764 356777777655 5789999999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccc
Q psy17516 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANV 243 (264)
Q Consensus 164 ~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~ 243 (264)
+++.+++.+||||||...|||++||+.-++|+||++|||++||||-.|+.+|..+|+ +.+.||||||..+.++..||.
T Consensus 1043 ~KRFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr--~~~~Q~IvISLK~~~y~kada 1120 (1141)
T KOG0018|consen 1043 GKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR--SSNFQFIVISLKEEFYQKADA 1120 (1141)
T ss_pred ccccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh--cCCceEEEEeccHHHhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 568999999999999999999
Q ss_pred eeEEEe-eCCeEEEEEeecc
Q psy17516 244 IFRTKF-VDGNSNVTRTVNR 262 (264)
Q Consensus 244 l~~v~~-~~g~s~i~~~~~~ 262 (264)
++||.- +.+.|+|..+..+
T Consensus 1121 LVGvyr~~~~~S~vlt~dL~ 1140 (1141)
T KOG0018|consen 1121 LVGVYRDQEDCSKVLTFDLT 1140 (1141)
T ss_pred eeeeccCcccccceEEeecC
Confidence 999854 3478888877654
No 329
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.91 E-value=3e-24 Score=230.21 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=124.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
..++++||+|++|++++ ||||||+++++++ |++|.++++++.+ +..++. ..+|..+..|.|+
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~----i~~~~~---~~lr~~Ig~V~Q~~~L 471 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN----LKDINL---KWWRSKIGVVSQDPLL 471 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcc----hhhCCH---HHHHHhccEecccccc
Confidence 46778999999999998 9999999999765 4567777744332 444442 2233333223332
Q ss_pred h-hhHHHhhcCCCcC--CC-------C-------------------------------------------CCchhhHHHh
Q psy17516 129 F-GSIFSLLLPGSQA--KL-------S-------------------------------------------PPAGKDILDG 155 (264)
Q Consensus 129 f-~~vf~~L~~g~~~--~l-------~-------------------------------------------~~~~~~~~~~ 155 (264)
| +++.+++..|... .. . ....++.+..
T Consensus 472 F~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 551 (1466)
T PTZ00265 472 FSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVD 551 (1466)
T ss_pred hhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHH
Confidence 2 3566665443210 00 0 0001122333
Q ss_pred HHHHcCCCcc-----------cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh-
Q psy17516 156 LEVNVAFGGL-----------WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF- 223 (264)
Q Consensus 156 l~~~v~l~~~-----------~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~- 223 (264)
++..+++.+. ....+.+||||||||++||||+ +++|+++||||||++||+.+...|.+.|+++.
T Consensus 552 a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl----l~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~ 627 (1466)
T PTZ00265 552 VSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI----IRNPKILILDEATSSLDNKSEYLVQKTINNLKG 627 (1466)
T ss_pred HHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH----hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhh
Confidence 3334443322 2456789999999999999886 57899999999999999999999999999886
Q ss_pred -cCCeEEEEEeCcchHhhccceeEEEeeCC
Q psy17516 224 -KTSQFIIVSLKEGMFSNANVIFRTKFVDG 252 (264)
Q Consensus 224 -~~~q~IiVTH~~~~~~~ad~l~~v~~~~g 252 (264)
++.|+|+||||..+++.||+++- |++|
T Consensus 628 ~~g~TvIiIsHrls~i~~aD~Iiv--l~~g 655 (1466)
T PTZ00265 628 NENRITIIIAHRLSTIRYANTIFV--LSNR 655 (1466)
T ss_pred cCCCEEEEEeCCHHHHHhCCEEEE--EeCC
Confidence 36899999999999999999998 5565
No 330
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=1.4e-23 Score=184.66 Aligned_cols=90 Identities=24% Similarity=0.342 Sum_probs=78.6
Q ss_pred hHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCC-CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEE
Q psy17516 155 GLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKP-APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIV 231 (264)
Q Consensus 155 ~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~-~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiV 231 (264)
.++..+++.+ ..++++.+|||||+||++||++++. +| |+++||||||++||+.++..+.++|+++.+ +.++|+|
T Consensus 119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~---~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~i 195 (226)
T cd03270 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVV 195 (226)
T ss_pred HHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh---CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4566788876 5789999999999999999998763 44 369999999999999999999999998764 6789999
Q ss_pred EeCcchHhhccceeEE
Q psy17516 232 SLKEGMFSNANVIFRT 247 (264)
Q Consensus 232 TH~~~~~~~ad~l~~v 247 (264)
||+...+..||+++-+
T Consensus 196 tH~~~~~~~~d~i~~l 211 (226)
T cd03270 196 EHDEDTIRAADHVIDI 211 (226)
T ss_pred EeCHHHHHhCCEEEEe
Confidence 9999999999999883
No 331
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=6.7e-25 Score=238.24 Aligned_cols=190 Identities=12% Similarity=0.097 Sum_probs=136.0
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+.+++++.++|+.+ ++...+++||+|++||+++ ||||||++++.++ ++.|++.+.|.
T Consensus 1937 ~L~v~nLsK~Y~~~---------------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~ 2001 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT---------------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGK 2001 (2272)
T ss_pred eEEEEEEEEEECCC---------------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCE
Confidence 45667777777621 1345667999999999998 9999999999775 45677777664
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
+ +.. . ....+ +.+++++|. +++..++ +....+.++....++..+++.+..+
T Consensus 2002 ~-----i~~---~-~~~~r-------~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d 2065 (2272)
T TIGR01257 2002 S-----ILT---N-ISDVH-------QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD 2065 (2272)
T ss_pred E-----Ccc---h-HHHHh-------hhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc
Confidence 3 211 0 11111 223333332 1111111 1111112234567778899999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hcccee
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIF 245 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~ 245 (264)
+++.+||||||||++||+|+ +.+|+++||||||+|||+.++..+.++|+++.+ +.++|++||+.+.++ .||+++
T Consensus 2066 k~~~~LSGGqKqRLslA~AL----i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~ 2141 (2272)
T TIGR01257 2066 RLAGTYSGGNKRKLSTAIAL----IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLA 2141 (2272)
T ss_pred CChhhCCHHHHHHHHHHHHH----hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999998876 478999999999999999999999999998754 678999999988764 699998
Q ss_pred EEEeeCCeEE
Q psy17516 246 RTKFVDGNSN 255 (264)
Q Consensus 246 ~v~~~~g~s~ 255 (264)
- |.+|...
T Consensus 2142 I--L~~G~i~ 2149 (2272)
T TIGR01257 2142 I--MVKGAFQ 2149 (2272)
T ss_pred E--EECCEEE
Confidence 7 6687653
No 332
>PLN03211 ABC transporter G-25; Provisional
Probab=99.91 E-value=9.2e-25 Score=218.79 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=124.4
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhcc----chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT----KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~----~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~ 128 (264)
+.+++++||++++||+++ |||||||+++++... .|++.+++.. + .... .+ ....+.++
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~-----~---~~~~---~~-~i~yv~Q~ 148 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRK-----P---TKQI---LK-RTGFVTQD 148 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEE-----C---chhh---cc-ceEEECcc
Confidence 457888999999999998 999999999987632 4666666642 1 1110 01 01111111
Q ss_pred ---h--hhHHHhhcCCCcCCCC----CCchhhHHHhHHHHcCCCcccc-----cccCCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 129 ---F--GSIFSLLLPGSQAKLS----PPAGKDILDGLEVNVAFGGLWK-----ESLGELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 129 ---f--~~vf~~L~~g~~~~l~----~~~~~~~~~~l~~~v~l~~~~~-----~~~~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
+ .+|.+.+.......+. ..+..+.+..++..+|+.+..+ +.+..||||||||++||+++ +.+
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL----~~~ 224 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM----LIN 224 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHH----HhC
Confidence 1 1344433211101111 1111234567778889977553 45678999999999999886 478
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcc--hHhhccceeEEEeeCCeE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEG--MFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~--~~~~ad~l~~v~~~~g~s 254 (264)
|++++|||||+|||..++..+.++|+++++ +.++|++||++. +.+.||+++- +.+|..
T Consensus 225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iil--L~~G~i 285 (659)
T PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLV--LSEGRC 285 (659)
T ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEE--ecCCcE
Confidence 999999999999999999999999999874 788999999986 4788999998 568854
No 333
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=8.5e-25 Score=218.39 Aligned_cols=172 Identities=21% Similarity=0.233 Sum_probs=119.5
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+.+++++||+|++|++++ |||||||++++++ ++.|.+.+ +.. + .|.-+. |....-+
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~-~--~i~y~~-----------q~~~~l~~ 396 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK-L--EVAYFD-----------QHRAELDP 396 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC-c--EEEEEe-----------CcccccCC
Confidence 357889999999999997 9999999999775 34555544 321 0 010000 1000000
Q ss_pred -hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 130 -GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 130 -~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
.++++.+..+... .........+..++..+++. +..++++.+||||||||++||+++ +.+|+++||||||++|
T Consensus 397 ~~tv~e~l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al----~~~p~lLlLDEPt~~L 471 (635)
T PRK11147 397 EKTVMDNLAEGKQE-VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLF----LKPSNLLILDEPTNDL 471 (635)
T ss_pred CCCHHHHHHhhccc-ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHH----hcCCCEEEEcCCCCCC
Confidence 1455544322110 10111122345666677885 467889999999999999999876 4689999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEee-CCeE
Q psy17516 208 DLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFV-DGNS 254 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~-~g~s 254 (264)
|+.+...+.++|+++ ++++|+||||...+ ..||+++- ++ +|..
T Consensus 472 D~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~--l~~~g~i 516 (635)
T PRK11147 472 DVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWI--FEGNGKI 516 (635)
T ss_pred CHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEE--EeCCCeE
Confidence 999999999999886 46899999998876 57999987 65 6754
No 334
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.90 E-value=2.6e-24 Score=176.94 Aligned_cols=121 Identities=26% Similarity=0.321 Sum_probs=96.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+.+++||++++||+++ ||||||+++++++. .+|++.+.+. ..+++
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--------------------------~~i~~ 67 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------------------------VKIGY 67 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--------------------------EEEEE
Confidence 35678999999999997 99999999997753 3444333220 11222
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
+++ |||||+||++|||+++ .+|+++++|||+++||+.+
T Consensus 68 ~~~--------------------------------------lS~G~~~rv~laral~----~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 68 FEQ--------------------------------------LSGGEKMRLALAKLLL----ENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred Ecc--------------------------------------CCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHH
Confidence 222 9999999999998864 6889999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCC
Q psy17516 212 TQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDG 252 (264)
Q Consensus 212 ~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g 252 (264)
+..+.++|+++ +.++|++||+...+ ..||+++- |++|
T Consensus 106 ~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~--l~~g 143 (144)
T cd03221 106 IEALEEALKEY--PGTVILVSHDRYFLDQVATKIIE--LEDG 143 (144)
T ss_pred HHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEE--EeCC
Confidence 99999999987 46899999998876 56899987 5566
No 335
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.2e-25 Score=196.62 Aligned_cols=176 Identities=19% Similarity=0.245 Sum_probs=128.4
Q ss_pred ccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL 135 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~ 135 (264)
+++|..+.--+++ ||||||+++++++. ++|.+..++.- +. +..+.-|.... .+.||+|||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~-----L~---Ds~k~i~lp~~---~RriGYVFQD 84 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV-----LV---DAEKGIFLPPE---KRRIGYVFQD 84 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEE-----ee---cccCCcccChh---hheeeeEeec
Confidence 4677777756776 99999999998764 45555555531 11 11112221111 2468999995
Q ss_pred --hcCCCcCCCCCC----c-hhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCC
Q psy17516 136 --LLPGSQAKLSPP----A-GKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208 (264)
Q Consensus 136 --L~~g~~~~l~~~----~-~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD 208 (264)
|||..+++-++. . .......+...+|+.+..+++|..|||||||||||+||+ +..|.++++|||.|+||
T Consensus 85 ARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRAL----Lt~P~LLLmDEPLaSLD 160 (352)
T COG4148 85 ARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRAL----LTAPELLLMDEPLASLD 160 (352)
T ss_pred cccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHH----hcCCCeeeecCchhhcc
Confidence 898776543221 1 112234555577999999999999999999999999875 57889999999999999
Q ss_pred HHHHHHHHHHHHHhhc--CCeEEEEEeCcc-hHhhccceeEEEeeCCeEEE
Q psy17516 209 LSHTQNIGQMLKRHFK--TSQFIIVSLKEG-MFSNANVIFRTKFVDGNSNV 256 (264)
Q Consensus 209 ~~~~~~i~~ll~~~~~--~~q~IiVTH~~~-~~~~ad~l~~v~~~~g~s~i 256 (264)
.....+++-+|..+++ +.-++.|||... .+..||+++- |++|..+-
T Consensus 161 ~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~--le~GkV~A 209 (352)
T COG4148 161 LPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVV--LENGKVKA 209 (352)
T ss_pred cchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEE--ecCCeEEe
Confidence 9999999999999987 455789999855 5578999887 88987653
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=4.3e-24 Score=210.04 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=118.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+.+++++||+|++|++++ ||||||+++++++ +..|.+.+ +.. + .|.-+ +|.....+
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~-~--~i~~v-----------~q~~~~~~~ 399 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET-V--KLAYV-----------DQSRDALDP 399 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc-e--EEEEE-----------eCCccccCC
Confidence 357889999999999997 9999999999775 34555544 321 0 01000 11100001
Q ss_pred -hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC
Q psy17516 130 -GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207 (264)
Q Consensus 130 -~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L 207 (264)
-++++.+..+.... ...........++..+++.+ ..++++.+|||||||||+||++++ .+|+++||||||++|
T Consensus 400 ~~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~----~~p~lllLDEPt~~L 474 (552)
T TIGR03719 400 NKTVWEEISGGLDII-QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLK----SGGNVLLLDEPTNDL 474 (552)
T ss_pred CCcHHHHHHhhcccc-ccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC
Confidence 13455443221100 01111122345677889864 568899999999999999998864 789999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeC-CeE
Q psy17516 208 DLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVD-GNS 254 (264)
Q Consensus 208 D~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~-g~s 254 (264)
|+.++..+.++|+++. +++|+|||+...+ ..||+++- |++ |..
T Consensus 475 D~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~--l~~~~~~ 519 (552)
T TIGR03719 475 DVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILA--FEGDSHV 519 (552)
T ss_pred CHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEE--EECCCeE
Confidence 9999999999999874 4799999999876 46999988 665 443
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=3.3e-24 Score=210.92 Aligned_cols=94 Identities=23% Similarity=0.292 Sum_probs=79.5
Q ss_pred HHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEE
Q psy17516 153 LDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232 (264)
Q Consensus 153 ~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVT 232 (264)
+..++..+|++. .++++.+|||||||||+||++++ .+|+++||||||++||+.+...+.++|+++. .++|+||
T Consensus 143 ~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~----~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiis 215 (552)
T TIGR03719 143 LEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLL----SKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVT 215 (552)
T ss_pred HHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEe
Confidence 445566678754 67889999999999999998864 7899999999999999999999999998863 5899999
Q ss_pred eCcchH-hhccceeEEEeeCCeEE
Q psy17516 233 LKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 233 H~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|+...+ ..||+++- +++|...
T Consensus 216 Hd~~~~~~~~d~v~~--l~~g~i~ 237 (552)
T TIGR03719 216 HDRYFLDNVAGWILE--LDRGRGI 237 (552)
T ss_pred CCHHHHHhhcCeEEE--EECCEEE
Confidence 998876 56999988 5688643
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=1.6e-24 Score=184.49 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-C-CeEEEEEeCcchHh-hccceeEEE
Q psy17516 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-T-SQFIIVSLKEGMFS-NANVIFRTK 248 (264)
Q Consensus 173 LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~-~q~IiVTH~~~~~~-~ad~l~~v~ 248 (264)
||||||||++|||+++ .+|+++++||||++||+.++..+.++|.++.+ + .++|+|||+..... .||+++-+.
T Consensus 72 LSgGq~qrv~laral~----~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 146 (177)
T cd03222 72 LSGGELQRVAIAAALL----RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146 (177)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEc
Confidence 9999999999998864 68899999999999999999999999998754 3 78999999988775 799998743
No 339
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=6.2e-24 Score=214.38 Aligned_cols=170 Identities=20% Similarity=0.259 Sum_probs=115.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||+|++|++++ |||||||++++++ +..|.+.+.+.. .|.-+.+.....+ .+..+.-.
T Consensus 523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l-----~~~~~~~~ 593 (718)
T PLN03073 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGL-----DLSSNPLL 593 (718)
T ss_pred eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccC-----CcchhHHH
Confidence 47889999999999997 9999999999775 334544332210 0100000000000 00000000
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~ 210 (264)
.+...+++ .....+..++..+++.+ ..++++.+||||||||++||+++ +.+|+++||||||++||+.
T Consensus 594 ~~~~~~~~--------~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL----~~~p~lLLLDEPT~~LD~~ 661 (718)
T PLN03073 594 YMMRCFPG--------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT----FKKPHILLLDEPSNHLDLD 661 (718)
T ss_pred HHHHhcCC--------CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHH----hcCCCEEEEcCCCCCCCHH
Confidence 00000111 11234556777889974 67889999999999999999876 4789999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 211 HTQNIGQMLKRHFKTSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 211 ~~~~i~~ll~~~~~~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
++..+.+.|.++ ++++|+|||+...+. .||+++- +.+|..
T Consensus 662 s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~--l~~G~i 702 (718)
T PLN03073 662 AVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWV--VSEGKV 702 (718)
T ss_pred HHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEE--EECCEE
Confidence 999999988875 358999999988775 6999988 668864
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.90 E-value=4.1e-24 Score=229.98 Aligned_cols=176 Identities=20% Similarity=0.197 Sum_probs=127.1
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh-ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA-MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
+..++++||+|++||.++ ||||||++++.++ +.+|.++++|.+ |..++. ..+|..+..|+|+.
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~d-----i~~i~~---~~lR~~is~IpQdp~L 1303 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVS-----WNSVTL---QTWRKAFGVIPQKVFI 1303 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEE-----cccCCH---HHHHhceEEEeCCCcc
Confidence 457889999999999997 9999999988654 356677777753 555543 33443332222221
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCccc-------c----cccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLW-------K----ESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~-------~----~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
|+|.+++-|... ..++.+..++..+++.+.. + .....||||||||++||||+ +++|+
T Consensus 1304 F~GTIR~NLdp~~~------~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL----Lr~~~ 1373 (1490)
T TIGR01271 1304 FSGTFRKNLDPYEQ------WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI----LSKAK 1373 (1490)
T ss_pred CccCHHHHhCcccC------CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH----hCCCC
Confidence 234444433211 1122334444555554322 2 22347999999999999875 58999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++|||||||+||..+...|.+.|++..++.|+|+||||..++..||+++- |++|..
T Consensus 1374 ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlv--L~~G~i 1429 (1490)
T TIGR01271 1374 ILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLV--IEGSSV 1429 (1490)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999998888999999999999999999998 779865
No 341
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=8.5e-24 Score=192.17 Aligned_cols=168 Identities=21% Similarity=0.229 Sum_probs=111.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
+.+++++||+|++||+++ ||||||+++++++. ..|.+.+.+. +.-+.+. ..+ .. .
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~------i~yv~q~--~~l-------~~--~ 112 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------ISFSSQF--SWI-------MP--G 112 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE------EEEEeCc--ccc-------cc--c
Confidence 457889999999999997 99999999997753 3455544331 1111100 000 00 2
Q ss_pred hHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 131 SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 131 ~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
++++++..+... .. . ....++..+++.+ ...+.+.+|||||+||++|||+++ .+|+++|
T Consensus 113 tv~enl~~~~~~----~~-~-~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~----~~p~iLi 182 (282)
T cd03291 113 TIKENIIFGVSY----DE-Y-RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY----KDADLYL 182 (282)
T ss_pred CHHHHhhccccc----CH-H-HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh----cCCCEEE
Confidence 445444322110 00 0 0111111122211 233456899999999999998864 6889999
Q ss_pred eecCCCCCCHHHHHHHHHH-HHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 200 LDEVDAALDLSHTQNIGQM-LKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~l-l~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|||||++||+..+..+.+. ++.+.++.++|+|||+...+..||+++- |.+|...
T Consensus 183 LDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~--l~~G~i~ 237 (282)
T cd03291 183 LDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI--LHEGSSY 237 (282)
T ss_pred EECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999885 4566567889999999998889999987 6788753
No 342
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.90 E-value=7.8e-24 Score=210.86 Aligned_cols=179 Identities=21% Similarity=0.216 Sum_probs=127.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhcc-----chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-----KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT 127 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-----~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~ 127 (264)
+.+++++|+++++||+++ |||||||+++++..+ .|++.+++.. + +. ..+++....+.+
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~-----~---~~---~~~~~~i~yv~Q 106 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMP-----I---DA---KEMRAISAYVQQ 106 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE-----C---CH---HHHhhhceeecc
Confidence 567889999999999998 999999999977543 3445555542 1 11 112221111222
Q ss_pred h---h--hhHHHhhcCCCcCCCC----CCchhhHHHhHHHHcCCCcccccccC------CCCHHHHHHHHHHHHHHHhhc
Q psy17516 128 D---F--GSIFSLLLPGSQAKLS----PPAGKDILDGLEVNVAFGGLWKESLG------ELSGGQRSLVALSLVLAMLLF 192 (264)
Q Consensus 128 ~---f--~~vf~~L~~g~~~~l~----~~~~~~~~~~l~~~v~l~~~~~~~~~------~LSGGekqrvaiA~~la~~l~ 192 (264)
+ + .+|.+++..+...... ..+....++.++..+|+.+..+..++ .||||||||++||+++ +
T Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL----~ 182 (617)
T TIGR00955 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL----L 182 (617)
T ss_pred ccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH----H
Confidence 2 1 1455544322111111 11122356778888999888888776 5999999999999876 5
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcc--hHhhccceeEEEeeCCeE
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEG--MFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~--~~~~ad~l~~v~~~~g~s 254 (264)
.+|+++++||||+|||+.++..+++.|+++++ +.++|++||++. +++.+|+++- |.+|..
T Consensus 183 ~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l--l~~G~~ 245 (617)
T TIGR00955 183 TDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL--MAEGRV 245 (617)
T ss_pred cCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE--eeCCeE
Confidence 78999999999999999999999999999875 688999999974 6899999987 668854
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=99.90 E-value=1.2e-23 Score=208.31 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=116.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHH-----------HhhHHHHHHHHHhhhHHHHHHHHH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIV-----------ESDRAKLLKVIEELDEKKKIALRE 120 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~-----------~~~~~~l~~~I~~l~~~~~~~~~~ 120 (264)
+.+.+++ .+++|++++ +|||||+++++++ |+.|.+. +.|.+ +..... .+..
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~-----l~~~~~----~~~~ 157 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTE-----LQNYFK----KLYN 157 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChH-----HHHHHH----HHhc
Confidence 4566788 899999998 9999999999875 3455543 22221 111110 0000
Q ss_pred HHHHhhhhhhhHHH--hhcCCCcCC--CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 121 AWLKVNTDFGSIFS--LLLPGSQAK--LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 121 ~~~~v~~~f~~vf~--~L~~g~~~~--l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
.-..+...++++++ .++.+ +.. +...+..+.+..++..+++....++++.+|||||+|||+||++++ .+|+
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~-tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~----~~p~ 232 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKG-KVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALL----RDAD 232 (590)
T ss_pred cCcceeecccchhhhhhhhcc-hHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh----cCCC
Confidence 00000111122211 11111 110 001112234566777889988889999999999999999998764 7899
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFR 246 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~ 246 (264)
+|||||||++||+.++..+.++|+++.++.++|+|||+...+ ..||+++-
T Consensus 233 lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~v 283 (590)
T PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHI 283 (590)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999986677899999998876 56999866
No 344
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=1.3e-23 Score=206.79 Aligned_cols=172 Identities=18% Similarity=0.160 Sum_probs=118.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+ +.. + .|.-+ +|....-+
T Consensus 338 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~-~--~i~~v-----------~q~~~~~~~~ 402 (556)
T PRK11819 338 LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET-V--KLAYV-----------DQSRDALDPN 402 (556)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc-e--EEEEE-----------eCchhhcCCC
Confidence 47889999999999997 9999999999775 34555544 321 0 01000 11100001
Q ss_pred hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCC
Q psy17516 130 GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208 (264)
Q Consensus 130 ~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD 208 (264)
-++++.+..+.... ...........++..+++.+ ..++++.+||||||||++||+++ +.+|+++||||||++||
T Consensus 403 ~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al----~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 403 KTVWEEISGGLDII-KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL----KQGGNVLLLDEPTNDLD 477 (556)
T ss_pred CCHHHHHHhhcccc-cccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH----hcCCCEEEEcCCCCCCC
Confidence 14555443221100 00111122345677889864 56889999999999999999876 47899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeC-CeEE
Q psy17516 209 LSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVD-GNSN 255 (264)
Q Consensus 209 ~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~-g~s~ 255 (264)
+.++..+.++|+++. +++|+|||+...+ ..||+++- +++ |...
T Consensus 478 ~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~--l~~~g~~~ 522 (556)
T PRK11819 478 VETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILA--FEGDSQVE 522 (556)
T ss_pred HHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEE--EECCCeEE
Confidence 999999999999874 4799999998866 57999887 665 5544
No 345
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.89 E-value=1.8e-23 Score=209.71 Aligned_cols=168 Identities=15% Similarity=0.201 Sum_probs=114.1
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc-c-chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-T-KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-~-~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
+.+++++||++++||.++ ||||||+++++++. . .|.+...+. ..+.-.+|...-..+
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~---------------~~i~~v~Q~~~l~~~ 529 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK---------------GKLFYVPQRPYMTLG 529 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC---------------CcEEEECCCCCCCCc
Confidence 357889999999999987 99999999997763 3 333222110 000000111100012
Q ss_pred hHHHhhcCCCcCC-C-CCCchhhHHHhHHHHcCCCcccccc---------cCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 131 SIFSLLLPGSQAK-L-SPPAGKDILDGLEVNVAFGGLWKES---------LGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 131 ~vf~~L~~g~~~~-l-~~~~~~~~~~~l~~~v~l~~~~~~~---------~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
++.+++..+.... . .....++.+..++..+++.+..+++ +.+||||||||++|||++ +++|+++|
T Consensus 530 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal----~~~p~ill 605 (659)
T TIGR00954 530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF----YHKPQFAI 605 (659)
T ss_pred CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH----HcCCCEEE
Confidence 4455543321110 0 0111123345566677876655443 379999999999999886 47899999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRT 247 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v 247 (264)
|||||++||+.+...+.+.+++. +.++|+||||..+.+.||+++-+
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l 651 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYM 651 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEE
Confidence 99999999999999999999874 78899999999999999999874
No 346
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=4.9e-23 Score=200.96 Aligned_cols=96 Identities=27% Similarity=0.326 Sum_probs=81.1
Q ss_pred HHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEE
Q psy17516 152 ILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231 (264)
Q Consensus 152 ~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiV 231 (264)
.+..++..+|++.. ++++++||||||.||+||++| +.+|+++||||||++||..+..++-++|+++. + ++|||
T Consensus 134 ~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL----~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiV 206 (530)
T COG0488 134 RAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARAL----LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVV 206 (530)
T ss_pred HHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHH----hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEE
Confidence 45556666788777 899999999999999998775 68999999999999999999999999998654 3 89999
Q ss_pred EeCcchH-hhccceeEEEeeCCeEEE
Q psy17516 232 SLKEGMF-SNANVIFRTKFVDGNSNV 256 (264)
Q Consensus 232 TH~~~~~-~~ad~l~~v~~~~g~s~i 256 (264)
|||..++ +.|++++. ++.|....
T Consensus 207 SHDR~FLd~V~t~I~~--ld~g~l~~ 230 (530)
T COG0488 207 SHDRYFLDNVATHILE--LDRGKLTP 230 (530)
T ss_pred eCCHHHHHHHhhheEE--ecCCceeE
Confidence 9999998 46899998 44665443
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.5e-23 Score=184.34 Aligned_cols=201 Identities=19% Similarity=0.159 Sum_probs=137.5
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhh-h-ccchhH
Q psy17516 24 VDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISME-A-MTKKSI 95 (264)
Q Consensus 24 vn~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~-l-~~~~~~ 95 (264)
.++..+.+++++..+|. .+.+++++|++|++||-.+ |||||||+++.+ . +..+.+
T Consensus 26 ~~~~~li~l~~v~v~r~-----------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~ 88 (257)
T COG1119 26 EINEPLIELKNVSVRRN-----------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88 (257)
T ss_pred CCCcceEEecceEEEEC-----------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce
Confidence 45557788899999998 3567778999999999665 999999999854 2 223444
Q ss_pred HHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh----hhhh---hHHHhhcCCCcCCC--C--CCch--hhHHHhHHHHcCC
Q psy17516 96 VESDRAKLLKVIEELDEKKKIALREAWLKVN----TDFG---SIFSLLLPGSQAKL--S--PPAG--KDILDGLEVNVAF 162 (264)
Q Consensus 96 ~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~----~~f~---~vf~~L~~g~~~~l--~--~~~~--~~~~~~l~~~v~l 162 (264)
...++. +-+-+-. ..+|+....|. ..|. .+++.++.|..+.. . ..+. .+.+..++..+|+
T Consensus 89 ~~~G~~-----~G~~~~~--~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~ 161 (257)
T COG1119 89 TLLGRR-----FGKGETI--FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA 161 (257)
T ss_pred eeeeee-----ccCCcch--HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcch
Confidence 333321 1111100 11222111111 1221 35555555543321 1 1112 2356788889999
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc---CCeEEEEEeCcchH-
Q psy17516 163 GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK---TSQFIIVSLKEGMF- 238 (264)
Q Consensus 163 ~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~---~~q~IiVTH~~~~~- 238 (264)
.+..+++..+||-||||||.||||+ +.+|.++|||||+++||..++..+.+.|.++.. ..++|+|||+.+-+
T Consensus 162 ~~la~r~~~~LS~Ge~rrvLiaRAL----v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 162 KHLADRPFGSLSQGEQRRVLIARAL----VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred hhhccCchhhcCHhHHHHHHHHHHH----hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcc
Confidence 9999999999999999999998875 689999999999999999999999999999763 57899999997655
Q ss_pred hhccceeEEEeeCCeE
Q psy17516 239 SNANVIFRTKFVDGNS 254 (264)
Q Consensus 239 ~~ad~l~~v~~~~g~s 254 (264)
...++++. +.+|..
T Consensus 238 ~~~th~ll--l~~g~v 251 (257)
T COG1119 238 PCFTHRLL--LKEGEV 251 (257)
T ss_pred cccceEEE--eeCCce
Confidence 44556555 456654
No 348
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.4e-23 Score=173.18 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=140.1
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~~ 100 (264)
++++.++.+-|..+ .--++|||++.+||+++ |||||||+|+.. .|+.|.+.+..+
T Consensus 6 LL~V~~lsk~Yg~~-----------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r 68 (258)
T COG4107 6 LLSVSGLSKLYGPG-----------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR 68 (258)
T ss_pred ceeehhhhhhhCCC-----------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence 56677888888833 23456999999999997 999999999854 344554443332
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhc--------CCCcCCCCC--------CchhhHHHhHHHHcCCC-
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLL--------PGSQAKLSP--------PAGKDILDGLEVNVAFG- 163 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~--------~g~~~~l~~--------~~~~~~~~~l~~~v~l~- 163 (264)
..=-..+..+++.++..+.+ ...|+|-|+-. .|++.+..+ -+....+..++.++.++
T Consensus 69 ~~~~~dl~~msEaeRR~L~R------TeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~ 142 (258)
T COG4107 69 DGQPRDLYTMSEAERRRLLR------TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL 142 (258)
T ss_pred CCCchhHhhhchHHHHHHhh------hccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCc
Confidence 11113466777777776654 33455555422 222221111 11223346677788875
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-h
Q psy17516 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-N 240 (264)
Q Consensus 164 ~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ 240 (264)
...+..|...|||++||+-|||-+ +..|.++++||||++||..-+.+++++++.+.. +-.+||||||...+. .
T Consensus 143 ~RiDD~PrtFSGGMqQRLQiARnL----Vt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 143 DRIDDLPRTFSGGMQQRLQIARNL----VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred ccccCcccccchHHHHHHHHHHHh----ccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHh
Confidence 466888999999999999998764 688899999999999999999999999999875 578999999999885 5
Q ss_pred ccceeEEEeeCCe
Q psy17516 241 ANVIFRTKFVDGN 253 (264)
Q Consensus 241 ad~l~~v~~~~g~ 253 (264)
|||+.- |.+|.
T Consensus 219 a~rlmv--mk~g~ 229 (258)
T COG4107 219 ADRLMV--MKQGQ 229 (258)
T ss_pred hhccee--ecCCC
Confidence 888876 66654
No 349
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.6e-23 Score=184.06 Aligned_cols=185 Identities=17% Similarity=0.179 Sum_probs=138.1
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRA 101 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~ 101 (264)
++++++.+.|. ++...+++||+|++|++.+ +||||.+++++++ +++|.+-+.++.
T Consensus 3 L~ie~vtK~Fg-----------------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~ 65 (300)
T COG4152 3 LEIEGVTKSFG-----------------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP 65 (300)
T ss_pred eEEecchhccC-----------------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcc
Confidence 45677888888 2345567999999999998 9999999988664 347788888763
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCC-----------CcCCCCCCchhhHHHhHHHHcCCCccccc
Q psy17516 102 KLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPG-----------SQAKLSPPAGKDILDGLEVNVAFGGLWKE 168 (264)
Q Consensus 102 ~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g-----------~~~~l~~~~~~~~~~~l~~~v~l~~~~~~ 168 (264)
++...+ ..+|+..+. |.+- .-.+....+....+..++.++++.++..+
T Consensus 66 --------~~~~~~-----------~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~ 126 (300)
T COG4152 66 --------LSQEIK-----------NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK 126 (300)
T ss_pred --------hhhhhh-----------hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccc
Confidence 221111 122322221 1111 11222334444567889999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeE
Q psy17516 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFR 246 (264)
Q Consensus 169 ~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~ 246 (264)
.+.+||-|.+|++-+-.+ +++.|+++|||||+|||||.|++.+-+.+.++.. ++++|+.||+++-+ +.||+++-
T Consensus 127 kIk~LSKGnqQKIQfisa----viHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llm 202 (300)
T COG4152 127 KIKELSKGNQQKIQFISA----VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLM 202 (300)
T ss_pred hHHHhhhhhhHHHHHHHH----HhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhe
Confidence 999999999999998544 5689999999999999999999999999999875 78899999998766 57999876
Q ss_pred EEeeCCeEEE
Q psy17516 247 TKFVDGNSNV 256 (264)
Q Consensus 247 v~~~~g~s~i 256 (264)
+..|..-+
T Consensus 203 --L~kG~~V~ 210 (300)
T COG4152 203 --LKKGQTVL 210 (300)
T ss_pred --ecCCceEE
Confidence 55675544
No 350
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.88 E-value=6.2e-23 Score=195.15 Aligned_cols=177 Identities=20% Similarity=0.292 Sum_probs=128.0
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
++...+++||++.+||.++ ||||||.+++.+ .+..|.+-.++-+ +...| ++.| .+++
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~-----l~qWd---~e~l-------G~hi 412 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGAD-----LRQWD---REQL-------GRHI 412 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchh-----hhcCC---HHHh-------cccc
Confidence 4688899999999999998 999999999855 4566666666542 44444 2334 3556
Q ss_pred hhHHHh--hcCCCcC----CCC-CCchhhHH-----HhH-HHHcCCCcccccc----cCCCCHHHHHHHHHHHHHHHhhc
Q psy17516 130 GSIFSL--LLPGSQA----KLS-PPAGKDIL-----DGL-EVNVAFGGLWKES----LGELSGGQRSLVALSLVLAMLLF 192 (264)
Q Consensus 130 ~~vf~~--L~~g~~~----~l~-~~~~~~~~-----~~l-~~~v~l~~~~~~~----~~~LSGGekqrvaiA~~la~~l~ 192 (264)
||..|. ||+|--+ +.. ..+.+.++ .++ +..+.++.-.+.. ...||||||||++|||| ++
T Consensus 413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA----lY 488 (580)
T COG4618 413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA----LY 488 (580)
T ss_pred CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH----Hc
Confidence 666663 6665321 222 12222111 111 1123455433433 46899999999999887 48
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
.+|.+++||||-|+||..-...+.+.|.... ++.++|+||||+..+..+|++.- |+||...
T Consensus 489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilv--l~~G~~~ 550 (580)
T COG4618 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILV--LQDGRIA 550 (580)
T ss_pred CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeee--ecCChHH
Confidence 9999999999999999999999999988876 48899999999999999999887 7788654
No 351
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.88 E-value=5.6e-23 Score=195.02 Aligned_cols=180 Identities=19% Similarity=0.224 Sum_probs=134.7
Q ss_pred cccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh--
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG-- 130 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~-- 130 (264)
.+++|||+|++||+-+ +|||||++|+.+ .|+.|+++++|+. + .++.. ..+.+.-..-|.|+|.
T Consensus 19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~-----v-~~~sP-~dA~~~GIGMVhQHF~Lv 91 (501)
T COG3845 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKE-----V-RIKSP-RDAIRLGIGMVHQHFMLV 91 (501)
T ss_pred ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEE-----e-ccCCH-HHHHHcCCcEEeeccccc
Confidence 3455999999999998 999999999965 4678888888864 2 22211 2233323334445553
Q ss_pred ---hHHHhhcCCCcCC----CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 131 ---SIFSLLLPGSQAK----LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 131 ---~vf~~L~~g~~~~----l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
+|++++..|.... .........+..+..+.|++=..+.++..||-||||||.|-++ |+++|+++|||||
T Consensus 92 ~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa----Lyr~a~iLILDEP 167 (501)
T COG3845 92 PTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA----LYRGARLLILDEP 167 (501)
T ss_pred cccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH----HhcCCCEEEEcCC
Confidence 4555555444321 1112233456778888899888899999999999999999765 5789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcc-hHhhccceeEEEeeCCe
Q psy17516 204 DAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEG-MFSNANVIFRTKFVDGN 253 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~-~~~~ad~l~~v~~~~g~ 253 (264)
||-|-|...+++++.++.+.+ +.++|+|||+.. .++.|||+-- +..|.
T Consensus 168 TaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTV--LR~Gk 217 (501)
T COG3845 168 TAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTV--LRRGK 217 (501)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEE--EeCCe
Confidence 999999999999999999875 789999999954 6688999755 55776
No 352
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.1e-23 Score=171.20 Aligned_cols=134 Identities=27% Similarity=0.314 Sum_probs=99.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||++++|++++ +|||||++++.++. .+|.+.+.+.. +..... ..+ ...+++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~-----~~~~~~---~~~-------~~~i~~ 77 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKD-----IAKLPL---EEL-------RRRIGY 77 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE-----cccCCH---HHH-------HhceEE
Confidence 46778999999999997 99999999997653 24444444321 111100 000 112233
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
+|| |||||+||++||++++ .+|+++++||||++||..+
T Consensus 78 ~~q--------------------------------------lS~G~~~r~~l~~~l~----~~~~i~ilDEp~~~lD~~~ 115 (157)
T cd00267 78 VPQ--------------------------------------LSGGQRQRVALARALL----LNPDLLLLDEPTSGLDPAS 115 (157)
T ss_pred Eee--------------------------------------CCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHH
Confidence 332 9999999999998875 5789999999999999999
Q ss_pred HHHHHHHHHHhhc-CCeEEEEEeCcchHhh-ccceeEEEeeCC
Q psy17516 212 TQNIGQMLKRHFK-TSQFIIVSLKEGMFSN-ANVIFRTKFVDG 252 (264)
Q Consensus 212 ~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~-ad~l~~v~~~~g 252 (264)
...+.++|+++.+ +.++|++||+...... ||+++. +.+|
T Consensus 116 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~--l~~g 156 (157)
T cd00267 116 RERLLELLRELAEEGRTVIIVTHDPELAELAADRVIV--LKDG 156 (157)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE--EeCc
Confidence 9999999998765 4789999999998866 699988 4454
No 353
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=175.70 Aligned_cols=185 Identities=21% Similarity=0.225 Sum_probs=132.9
Q ss_pred hhhhcccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhhHHHHHHHHHhhhHHHHHHHH-HHHHHhhh
Q psy17516 57 MKKYLGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESDRAKLLKVIEELDEKKKIALR-EAWLKVNT 127 (264)
Q Consensus 57 ~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~-~~~~~v~~ 127 (264)
.++..++.+|++|.+|+|+. +|||||++++++ .++.|.+.+.+.+ +.+.+..++..+- +.||++..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~d-----Vtk~~~~~RA~~larVfQdp~~ 91 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVD-----VTKKSVAKRANLLARVFQDPLA 91 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECcee-----cccCCHHHHhhHHHHHhcchhh
Confidence 35667778999999999996 999999999965 4567777777754 7777777766543 35555433
Q ss_pred hh-h--hHHHhhcC----CCcCCCCCC--c--hh---hHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcC
Q psy17516 128 DF-G--SIFSLLLP----GSQAKLSPP--A--GK---DILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFK 193 (264)
Q Consensus 128 ~f-~--~vf~~L~~----g~~~~l~~~--~--~~---~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~ 193 (264)
.- + +|++++.. |....+... . .+ +.+..+ -.|+.+..+.++.-|||||||-++++.| -++
T Consensus 92 gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l--~lgLenrL~~~iglLSGGQRQalsL~MA----tl~ 165 (263)
T COG1101 92 GTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARL--GLGLENRLSDRIGLLSGGQRQALSLLMA----TLH 165 (263)
T ss_pred CCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhc--ccchhhhhcChhhhccchHHHHHHHHHH----hcC
Confidence 22 1 56665432 222222221 1 11 112222 2366778889999999999998888654 479
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||++++|||-||||||.....|+++-.++.+ +-|.++|||+.+-+ .|.+|++= |.+|..
T Consensus 166 ~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlIm--Lh~G~I 227 (263)
T COG1101 166 PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIM--LHSGKI 227 (263)
T ss_pred CCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEE--EeCCeE
Confidence 9999999999999999999999999888754 67899999997754 77888775 667765
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.88 E-value=7.1e-23 Score=219.34 Aligned_cols=178 Identities=13% Similarity=0.106 Sum_probs=123.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhcc----chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT----KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~----~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~ 128 (264)
+.+++++|+.+++|++++ |||||||++|++..+ .|++.+++.. .+. ..+++....+.|+
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~--------~~~---~~~~~~igyv~Q~ 961 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP--------KKQ---ETFARISGYCEQN 961 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc--------CCh---HHhhhheEEEccc
Confidence 368899999999999998 999999999988754 3444444421 111 1122111111111
Q ss_pred ---h--hhHHHhhcCCCcCCCCC----CchhhHHHhHHHHcCCCccccccc-----CCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 129 ---F--GSIFSLLLPGSQAKLSP----PAGKDILDGLEVNVAFGGLWKESL-----GELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 129 ---f--~~vf~~L~~g~~~~l~~----~~~~~~~~~l~~~v~l~~~~~~~~-----~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
+ -+|.+.+......++.. .+....++.++..+++.+..++.+ ..|||||||||+||+++ +.+
T Consensus 962 d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL----~~~ 1037 (1470)
T PLN03140 962 DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVEL----VAN 1037 (1470)
T ss_pred cccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHH----hhC
Confidence 1 13444332111111111 111234677888899988777775 58999999999999876 478
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcc--hHhhccceeEEEeeC-Ce
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEG--MFSNANVIFRTKFVD-GN 253 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~--~~~~ad~l~~v~~~~-g~ 253 (264)
|++++|||||+|||+.++..++++|+++++ +.++|++||++. +++.||+++- |.+ |.
T Consensus 1038 P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vll--L~~gG~ 1098 (1470)
T PLN03140 1038 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL--MKRGGQ 1098 (1470)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEE--EcCCCE
Confidence 899999999999999999999999999875 678999999987 4689999988 555 54
No 355
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.7e-22 Score=171.36 Aligned_cols=167 Identities=23% Similarity=0.249 Sum_probs=117.1
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
+..++.++||++.+||++. +||||||++++++ |+.|++.+.+.. |.... +.+.+..-.+.-+-
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~-----i~~~~----~~~~~~l~yLGH~~ 84 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEP-----IQNVR----ESYHQALLYLGHQP 84 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCC-----Cccch----hhHHHHHHHhhccc
Confidence 4578889999999999985 9999999999876 456677777532 32221 11222111111111
Q ss_pred h-----hHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 130 G-----SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 130 ~-----~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
+ ++|++|-...... .. ...+.+.+.+..||+.+..+-++.+||-|||+||||||.. +.++|+.|||||+
T Consensus 85 giK~eLTa~ENL~F~~~~~-~~-~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~----ls~~pLWiLDEP~ 158 (209)
T COG4133 85 GIKTELTALENLHFWQRFH-GS-GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW----LSPAPLWILDEPF 158 (209)
T ss_pred cccchhhHHHHHHHHHHHh-CC-CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHH----cCCCCceeecCcc
Confidence 1 4455432110000 00 1122345556689999999999999999999999999874 6789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS 239 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~ 239 (264)
++||.+++..+..++..... ++-+|..||.+.-..
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99999999999999987664 677888999876543
No 356
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1e-22 Score=177.58 Aligned_cols=185 Identities=18% Similarity=0.180 Sum_probs=135.8
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc----cchhHHHhhHHHHHHHHHhhhHHHHHHH--HHHHHHhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM----TKKSIVESDRAKLLKVIEELDEKKKIAL--REAWLKVN 126 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~----~~~~~~~~~~~~l~~~I~~l~~~~~~~~--~~~~~~v~ 126 (264)
+-+++++|++|++||+-+ ||||||.+++++.+ ++|++++++++ |..++...|.+. .-+||.+.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ged-----I~~l~~~ERAr~GifLafQ~P~ 91 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED-----ILELSPDERARAGIFLAFQYPV 91 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcc-----cccCCHhHHHhcCCEEeecCCc
Confidence 467789999999999987 99999999998765 57788888864 777776555442 23566554
Q ss_pred hhhh-hHHHhhcCCCcCCCC----CCchhhHHHhHHHHcCCCc-ccccccC-CCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 127 TDFG-SIFSLLLPGSQAKLS----PPAGKDILDGLEVNVAFGG-LWKESLG-ELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 127 ~~f~-~vf~~L~~g~~~~l~----~~~~~~~~~~l~~~v~l~~-~~~~~~~-~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
+--| .+-+.|-.+.++... ..+..+.+...+..+++++ .++++++ -+|||||.|..|+.++ +-.|+++|
T Consensus 92 ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~----~lePkl~I 167 (251)
T COG0396 92 EIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL----LLEPKLAI 167 (251)
T ss_pred cCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH----hcCCCEEE
Confidence 4333 222222211111110 1122344566677788876 7788885 8999999999998765 45789999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhc--cceeEEEeeCCeE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNA--NVIFRTKFVDGNS 254 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~a--d~l~~v~~~~g~s 254 (264)
||||+||||-.+...|.+.+..+.. +..++||||..+++.+. |+++- |-+|..
T Consensus 168 LDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv--l~~GrI 223 (251)
T COG0396 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV--LYDGRI 223 (251)
T ss_pred ecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE--EECCEE
Confidence 9999999999999999999999875 78899999999999886 88877 557765
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.87 E-value=6.3e-23 Score=219.55 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=125.2
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhcc-----chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-----KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT 127 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-----~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~ 127 (264)
+.+++++|+++++|++++ |||||||++|+++.+ .|++.++|.. + +. .+++....+.|
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~-----~---~~----~~~~~i~yv~Q 843 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP-----L---DS----SFQRSIGYVQQ 843 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE-----C---Ch----hhhcceeeecc
Confidence 457889999999999998 999999999977643 4666666642 2 11 12221111122
Q ss_pred h---h--hhHHHhhcCCCcCCC----CCCchhhHHHhHHHHcCCCcccccccC----CCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 128 D---F--GSIFSLLLPGSQAKL----SPPAGKDILDGLEVNVAFGGLWKESLG----ELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 128 ~---f--~~vf~~L~~g~~~~l----~~~~~~~~~~~l~~~v~l~~~~~~~~~----~LSGGekqrvaiA~~la~~l~~~ 194 (264)
+ + .+|.+.+..+..... ...+..+.++.++..+++.+..++.++ .||||||||++||++++ .+
T Consensus 844 ~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~----~~ 919 (1394)
T TIGR00956 844 QDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV----AK 919 (1394)
T ss_pred cccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH----cC
Confidence 1 1 134443321110011 111112346778888899888888887 79999999999998864 67
Q ss_pred CC-EEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch--HhhccceeEEEeeCC
Q psy17516 195 AP-LYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM--FSNANVIFRTKFVDG 252 (264)
Q Consensus 195 ~~-illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~--~~~ad~l~~v~~~~g 252 (264)
|+ +++|||||+|||+.++..+.++|+++++ +.++|++||++.. ++.+|+++- +.+|
T Consensus 920 P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~--L~~G 979 (1394)
T TIGR00956 920 PKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLL--LQKG 979 (1394)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEE--EcCC
Confidence 76 9999999999999999999999999864 6789999999985 478999987 5576
No 358
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.87 E-value=2.7e-22 Score=180.45 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=79.4
Q ss_pred HhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcC--CCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEE
Q psy17516 154 DGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFK--PAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFI 229 (264)
Q Consensus 154 ~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~--~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~I 229 (264)
..++..+|+.. ..++++.+|||||+||++||++++. + +|+++||||||++||+.....+.++|+++.+ +.++|
T Consensus 150 ~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~---~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvI 226 (261)
T cd03271 150 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK---RSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVV 226 (261)
T ss_pred HHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhc---CCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 44666889987 5789999999999999999998752 3 3799999999999999999999999998875 68899
Q ss_pred EEEeCcchHhhccceeE
Q psy17516 230 IVSLKEGMFSNANVIFR 246 (264)
Q Consensus 230 iVTH~~~~~~~ad~l~~ 246 (264)
+|||+...++.||+++.
T Consensus 227 iitH~~~~i~~aD~ii~ 243 (261)
T cd03271 227 VIEHNLDVIKCADWIID 243 (261)
T ss_pred EEeCCHHHHHhCCEEEE
Confidence 99999999999999888
No 359
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=1.6e-22 Score=217.89 Aligned_cols=165 Identities=20% Similarity=0.217 Sum_probs=112.5
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhcc--chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT--KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~--~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+..++++||++++|+.++ ||||||++.+++..+ +|+... ++..+..+.|+
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~--------------------~~~~Iayv~Q~p~ 689 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV--------------------IRGSVAYVPQVSW 689 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE--------------------ecCcEEEEcCccc
Confidence 346789999999999997 999999998866432 333211 11111111121
Q ss_pred -h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-------CCccc----ccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 -F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-------FGGLW----KESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 -f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-------l~~~~----~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| ++|.+++..|... +. +....++..++ +|+.. ......||||||||+|||||+ +++|
T Consensus 690 Lf~gTIreNI~fg~~~-----~~-e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl----y~~~ 759 (1495)
T PLN03232 690 IFNATVRENILFGSDF-----ES-ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV----YSNS 759 (1495)
T ss_pred cccccHHHHhhcCCcc-----CH-HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH----hcCC
Confidence 1 4666666555311 11 11222222233 22222 234557999999999998875 6899
Q ss_pred CEEEeecCCCCCCHHHHHHHHH-HHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQ-MLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~-ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
+++||||||||||+.+...+.+ .+....++.|+|+|||+...+..||+++- |++|...
T Consensus 760 ~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~--L~~G~i~ 818 (1495)
T PLN03232 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIIL--VSEGMIK 818 (1495)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEE--EeCCEEE
Confidence 9999999999999999988865 45555567899999999999999999998 6788653
No 360
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.86 E-value=1.8e-22 Score=216.04 Aligned_cols=181 Identities=14% Similarity=0.096 Sum_probs=123.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc------cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM------TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVN 126 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~------~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~ 126 (264)
+.+++++|+.+++||+++ |||||||++++++. .+|++.++|.. +.... ..++.....+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~-----~~~~~----~~~r~~i~yv~ 144 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGIT-----PEEIK----KHYRGDVVYNA 144 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEe-----hHHHH----hhcCceeEEec
Confidence 467889999999999997 99999999997752 46677777642 22221 11111011111
Q ss_pred hh---hh--hHHHhhcCCCcCCC------CCCch--hh-HHHhHHHHcCCCcccccc-----cCCCCHHHHHHHHHHHHH
Q psy17516 127 TD---FG--SIFSLLLPGSQAKL------SPPAG--KD-ILDGLEVNVAFGGLWKES-----LGELSGGQRSLVALSLVL 187 (264)
Q Consensus 127 ~~---f~--~vf~~L~~g~~~~l------~~~~~--~~-~~~~l~~~v~l~~~~~~~-----~~~LSGGekqrvaiA~~l 187 (264)
+. +. +|.+.+..+..... ..... .+ ..+.++..+|+.+.+++. +..|||||||||+||+++
T Consensus 145 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL 224 (1394)
T TIGR00956 145 ETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224 (1394)
T ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHH
Confidence 11 11 34443321110000 01111 11 235567788998776654 567999999999999886
Q ss_pred HHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCc--chHhhccceeEEEeeCCeE
Q psy17516 188 AMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKE--GMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 188 a~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~--~~~~~ad~l~~v~~~~g~s 254 (264)
+ .+|+++++||||+|||+.++..+.+.|+++++ +.++|+++|++ .+.+.+|+++- +.+|..
T Consensus 225 ~----~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~--L~~G~i 289 (1394)
T TIGR00956 225 L----GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIV--LYEGYQ 289 (1394)
T ss_pred H----hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE--EeCCeE
Confidence 4 68899999999999999999999999999874 57888999996 46788999998 557753
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=99.86 E-value=6.9e-22 Score=213.86 Aligned_cols=164 Identities=20% Similarity=0.216 Sum_probs=112.5
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh-c-cc-hhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA-M-TK-KSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-~-~~-~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~- 128 (264)
+..++++||++++|+.++ ||||||++.+++. + .+ |.+...+ ....+.|.
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---------------------~Iayv~Q~p 688 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---------------------TVAYVPQVS 688 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC---------------------eEEEEcCcc
Confidence 346789999999999997 9999999988654 3 23 3332111 11111121
Q ss_pred --h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-------CCcc----cccccCCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 129 --F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-------FGGL----WKESLGELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 129 --f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-------l~~~----~~~~~~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
| ++|.+++..|... + ++....++..++ +|+. .......||||||||++||||+ +++
T Consensus 689 ~LfngTIreNI~fg~~~-----d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl----y~~ 758 (1622)
T PLN03130 689 WIFNATVRDNILFGSPF-----D-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV----YSN 758 (1622)
T ss_pred ccCCCCHHHHHhCCCcc-----c-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH----hCC
Confidence 1 4666666554321 1 111222222222 2221 2234567999999999998875 689
Q ss_pred CCEEEeecCCCCCCHHHHHHHHH-HHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQ-MLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~-ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
|++|||||||||||+.+...+.+ .++...++.|+|+|||+...+..||+++- |++|...
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~--L~~G~i~ 818 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIIL--VHEGMIK 818 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEE--EeCCEEE
Confidence 99999999999999999988764 56655567899999999999999999998 6788764
No 362
>KOG0056|consensus
Probab=99.86 E-value=2.1e-22 Score=190.90 Aligned_cols=182 Identities=24% Similarity=0.276 Sum_probs=124.5
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+..++||||++.+|+.++ +||||+++++.-. .+.|.+.++|++ |... ....+|....-|+|.-
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqd-----Irnv---t~~SLRs~IGVVPQDt 621 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQD-----IRNV---TQSSLRSSIGVVPQDT 621 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCch-----HHHH---HHHHHHHhcCcccCcc
Confidence 3566789999999999998 8999999987432 346777777753 4443 3344553333333321
Q ss_pred hhHHHhhcCC--CcCCCCCCchh--h--HHHhH-HHHcCCCcccc----cccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 130 GSIFSLLLPG--SQAKLSPPAGK--D--ILDGL-EVNVAFGGLWK----ESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 130 ~~vf~~L~~g--~~~~l~~~~~~--~--~~~~l-~~~v~l~~~~~----~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
..|+..+.. ..++....+.+ . .+.++ +..+++|+..+ .+.-.|||||||||||||++ ++.|.++
T Consensus 622 -vLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti----LK~P~iI 696 (790)
T KOG0056|consen 622 -VLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI----LKAPSII 696 (790)
T ss_pred -eeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH----hcCCcEE
Confidence 122221111 11222222211 1 11111 22345665443 34557999999999998874 6899999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
+|||.|||||..+...|...|.+++.+.|.|||.||..+.-.||-++- ..||..
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILv--i~~G~I 750 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILV--ISNGRI 750 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEE--EeCCeE
Confidence 999999999999999999999999999999999999999999999887 447764
No 363
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=7.4e-22 Score=172.43 Aligned_cols=102 Identities=31% Similarity=0.548 Sum_probs=88.2
Q ss_pred HhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEe
Q psy17516 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSL 233 (264)
Q Consensus 154 ~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH 233 (264)
..+...+++++..++++..||||||||++||++++...++||+++++||||++||+.++..+.++++++++++++|+|||
T Consensus 109 ~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~ 188 (212)
T cd03274 109 GEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISL 188 (212)
T ss_pred CcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 34445667888888889999999999999999876322367899999999999999999999999999887889999999
Q ss_pred CcchHhhccceeEEEeeCCeEE
Q psy17516 234 KEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 234 ~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
++.+++.||+++.++..|.-|+
T Consensus 189 ~~~~~~~~d~v~~~~~~~~~~~ 210 (212)
T cd03274 189 RNNMFELADRLVGIYKTNNCTK 210 (212)
T ss_pred cHHHHHhCCEEEEEEecCCccc
Confidence 9999999999999887776553
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.85 E-value=7.3e-22 Score=213.10 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=115.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..++++||++++|++++ ||||||++++++. +..|.+.+.+. |.=+. |...-.-++
T Consensus 652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------i~yv~-----------Q~~~l~~~T 714 (1522)
T TIGR00957 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS------VAYVP-----------QQAWIQNDS 714 (1522)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCE------EEEEc-----------CCccccCCc
Confidence 46789999999999997 9999999998764 33455444331 11111 110000146
Q ss_pred HHHhhcCCCcCCCCCCchhhHH--HhHHHHcCC-C----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDIL--DGLEVNVAF-G----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~--~~l~~~v~l-~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
+.+++..|... .....++.. .++...++. + ......+.+||||||||++||||+ +.+|+++||||||
T Consensus 715 i~eNI~~g~~~--~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl----~~~~~illLDEp~ 788 (1522)
T TIGR00957 715 LRENILFGKAL--NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV----YSNADIYLFDDPL 788 (1522)
T ss_pred HHHHhhcCCcc--CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH----hcCCCEEEEcCCc
Confidence 66665544221 111111111 112222222 1 123567889999999999999875 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHH---hhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKR---HFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~---~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||+.+...+.+.+.+ ..++.++|+|||+...+..||+++- |++|..
T Consensus 789 saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~--l~~G~i 839 (1522)
T TIGR00957 789 SAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV--MSGGKI 839 (1522)
T ss_pred cccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEE--ecCCeE
Confidence 99999999999998864 3456899999999999999999988 668865
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.84 E-value=1.7e-21 Score=209.86 Aligned_cols=169 Identities=24% Similarity=0.266 Sum_probs=114.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
..++++||+|++|++++ |||||||++++++. ..|.+.+.+. |.=+. |.. .-| +
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~------iayv~-----------Q~~-~l~~~ 501 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------ISFSP-----------QTS-WIMPG 501 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE------EEEEe-----------CCC-ccCCc
Confidence 47889999999999997 99999999987653 3555444331 11111 110 001 3
Q ss_pred hHHHhhcCCCcCCCCCCchhhH--HHhHHHHcCC-Cc----ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 131 SIFSLLLPGSQAKLSPPAGKDI--LDGLEVNVAF-GG----LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 131 ~vf~~L~~g~~~~l~~~~~~~~--~~~l~~~v~l-~~----~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
++.+++..|... ......+. ..++...+.. +. .....+..||||||||++||||+ +.+|++||||||
T Consensus 502 Ti~eNI~~g~~~--~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl----~~~~~illLDep 575 (1490)
T TIGR01271 502 TIKDNIIFGLSY--DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV----YKDADLYLLDSP 575 (1490)
T ss_pred cHHHHHHhcccc--chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH----HcCCCEEEEeCC
Confidence 566665433211 11101111 1122222211 11 23456789999999999999886 578999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 204 DAALDLSHTQNIGQM-LKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 204 ta~LD~~~~~~i~~l-l~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++|||+.....+.+. +..+.++.++|+|||+...+..||+++- |++|..
T Consensus 576 ~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~--l~~g~i 625 (1490)
T TIGR01271 576 FTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILL--LHEGVC 625 (1490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEE--EECCEE
Confidence 999999999999984 6666678899999999999999999988 668764
No 366
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.8e-21 Score=177.26 Aligned_cols=181 Identities=23% Similarity=0.235 Sum_probs=125.9
Q ss_pred hhhhcccccceeeeccceee------chhhHHHHhhh-hh-ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Q psy17516 57 MKKYLGSMSSFSVKVGAMVK------APLRTLLFISM-EA-MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD 128 (264)
Q Consensus 57 ~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~-~l-~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~ 128 (264)
..+++++++||++..|+.++ +||||+++++- ++ .+.|.+.+++++ |.... ...+|++..-|++.
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qd-----ir~vt---q~slR~aIg~VPQD 345 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD-----IRDVT---QQSLRRAIGIVPQD 345 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchh-----HHHhH---HHHHHHHhCcCccc
Confidence 45788899999999999998 89999999873 33 345666666643 44443 34455555444443
Q ss_pred h----hhHHHhhcCCCcCCCCCCchh-----hHH-HhHHHHcCCCccc---ccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 F----GSIFSLLLPGSQAKLSPPAGK-----DIL-DGLEVNVAFGGLW---KESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 f----~~vf~~L~~g~~~~l~~~~~~-----~~~-~~l~~~v~l~~~~---~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
- .++|-+.--|+.. ..+.+ +.. .+-.++-.|.++. -...-.|||||||||||||++ +++|
T Consensus 346 tvLFNDti~yni~ygr~~---at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~i----lk~p 418 (497)
T COG5265 346 TVLFNDTIAYNIKYGRPD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTI----LKNP 418 (497)
T ss_pred ceehhhhHHHHHhccCcc---ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHH----hcCC
Confidence 2 2333333222211 11111 111 1111122233322 234457999999999998874 6899
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
|+++|||.||+||....+.+...|++.+.+.|.++|.||..++-.||.++- +++|..
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiiv--l~~g~i 475 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIV--LDNGRI 475 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEE--eeCCEE
Confidence 999999999999999999999999999999999999999999999999987 778875
No 367
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=5.1e-21 Score=206.66 Aligned_cols=171 Identities=18% Similarity=0.150 Sum_probs=112.3
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
+.+++++||+|++|++++ |||||||+++++.. ..|.+.... .|.= .+|...-.-+
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~------~i~y-----------v~Q~~~l~~~ 735 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER------SIAY-----------VPQQAWIMNA 735 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------eEEE-----------EeCCCccCCC
Confidence 347889999999999997 99999999987653 344332210 0100 0111000013
Q ss_pred hHHHhhcCCCcCCCCCCchhhH-----HHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 131 SIFSLLLPGSQAKLSPPAGKDI-----LDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 131 ~vf~~L~~g~~~~l~~~~~~~~-----~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
++.+++..+... ........ +......+ |+.....+.+.+||||||||++||||+ +.+|+++|||||
T Consensus 736 Tv~enI~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl----~~~p~illLDEP 809 (1560)
T PTZ00243 736 TVRGNILFFDEE--DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAV----YANRDVYLLDDP 809 (1560)
T ss_pred cHHHHHHcCChh--hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHH----hcCCCEEEEcCc
Confidence 455554433210 00000010 11111122 444455677899999999999999876 578999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 204 DAALDLSHTQNIGQM-LKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 204 ta~LD~~~~~~i~~l-l~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
|++||+.....+.+. +....++.++|+|||+...+..||+++- |++|..
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~--l~~G~i 859 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVA--LGDGRV 859 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEE--EECCEE
Confidence 999999998888764 3333357899999999999999999998 668865
No 368
>PLN03140 ABC transporter G family member; Provisional
Probab=99.83 E-value=3.7e-21 Score=206.24 Aligned_cols=179 Identities=19% Similarity=0.191 Sum_probs=122.7
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhcc-----chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-----KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT 127 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-----~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~ 127 (264)
+.+++++|+.+++|++++ |||||||++++++.. .|++.++|.. +.+... +.....+.+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~-----~~~~~~------~~~i~yv~Q 246 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYR-----LNEFVP------RKTSAYISQ 246 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEe-----chhhcc------cceeEEecc
Confidence 458899999999999998 999999999977532 4566666542 222111 111111111
Q ss_pred h---hh--hHHHhhcC-----CCcC------CCCCCc--------h----------------hhHHHhHHHHcCCCccc-
Q psy17516 128 D---FG--SIFSLLLP-----GSQA------KLSPPA--------G----------------KDILDGLEVNVAFGGLW- 166 (264)
Q Consensus 128 ~---f~--~vf~~L~~-----g~~~------~l~~~~--------~----------------~~~~~~l~~~v~l~~~~- 166 (264)
+ +. +|.+.+.. +... .....+ . ....+.++..+|+.+..
T Consensus 247 ~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~ 326 (1470)
T PLN03140 247 NDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKD 326 (1470)
T ss_pred cccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccC
Confidence 1 11 34443211 1000 000000 0 01234567788997654
Q ss_pred ----ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCc--chH
Q psy17516 167 ----KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKE--GMF 238 (264)
Q Consensus 167 ----~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~--~~~ 238 (264)
++.+..|||||||||+||+++ +.+|+++++||||+|||+.++..+.+.|+++++ +.++|+++|++ .+.
T Consensus 327 t~vg~~~~rglSGGerkRVsia~aL----~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~ 402 (1470)
T PLN03140 327 TIVGDEMIRGISGGQKKRVTTGEMI----VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETF 402 (1470)
T ss_pred ceeCCccccCCCcccceeeeehhhh----cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHH
Confidence 556789999999999998875 579999999999999999999999999999864 67889999985 678
Q ss_pred hhccceeEEEeeCCeE
Q psy17516 239 SNANVIFRTKFVDGNS 254 (264)
Q Consensus 239 ~~ad~l~~v~~~~g~s 254 (264)
+.+|+++- +.+|..
T Consensus 403 ~lfD~vil--L~~G~i 416 (1470)
T PLN03140 403 DLFDDIIL--LSEGQI 416 (1470)
T ss_pred HHhheEEE--eeCceE
Confidence 99999988 668864
No 369
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=9.3e-21 Score=162.00 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=127.8
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh---
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG--- 130 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~--- 130 (264)
.+++||+|.+||+=+ +||||++-++.+. |+.|.+++.+.. .|..+++....+. -|.++|+
T Consensus 21 ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~----dl~~~~e~~IAr~-----GIGRKFQ~Pt 91 (249)
T COG4674 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT----DLTKLPEHRIARA-----GIGRKFQKPT 91 (249)
T ss_pred eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCch----hhccCCHHHHHHh-----ccCccccCCe
Confidence 457999999999765 9999999888664 455777777743 3666665443322 2334442
Q ss_pred -----hHHHhhc--CCCcCC----C--C-CCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 131 -----SIFSLLL--PGSQAK----L--S-PPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 131 -----~vf~~L~--~g~~~~----l--~-~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+||++|- ...... + . ..+..+..++++...|+.++++.....||.||||++.|+.. ++++|.
T Consensus 92 Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl----l~Q~P~ 167 (249)
T COG4674 92 VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML----LAQDPK 167 (249)
T ss_pred ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee----eccCCc
Confidence 3444421 111111 1 0 11223467888888999999999999999999999999755 569999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhcccee
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIF 245 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~ 245 (264)
++++|||+||+-++......++|+.++....++||-||++.+ ++|+++-
T Consensus 168 lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VT 217 (249)
T COG4674 168 LLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVT 217 (249)
T ss_pred EEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeE
Confidence 999999999999999999999999999999999999999988 5788763
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.8e-20 Score=167.16 Aligned_cols=171 Identities=20% Similarity=0.242 Sum_probs=122.7
Q ss_pred ccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHH
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIF 133 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf 133 (264)
-+|+||+|++|++++ +||||+|+++.+ +|+.|.+.+.|.. ..+ +++.+.+ ..+.||
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~-------Pf~--~~~~~~~-------~~~~v~ 103 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD-------PFR--RREEYLR-------SIGLVM 103 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcC-------cch--hHHHHHH-------HHHHHh
Confidence 357999999999997 999999999966 4677777777754 222 2222221 122222
Q ss_pred H---hhc---CCC-c------C-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 134 S---LLL---PGS-Q------A-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 134 ~---~L~---~g~-~------~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
- .+. |-. + . ......-.+....+-..+++.+..+.++..||-|||.|+-||.+ |++||++++
T Consensus 104 gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaa----LLh~p~VLf 179 (325)
T COG4586 104 GQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAA----LLHPPKVLF 179 (325)
T ss_pred hhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHH----hcCCCcEEE
Confidence 1 110 100 0 0 00001112345666667789999999999999999999999754 689999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcc-hHhhccceeEEEeeCCeE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEG-MFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~-~~~~ad~l~~v~~~~g~s 254 (264)
|||||-+||...+.++.+++++.++ ++|++..||+.. +...|||+|-+. .|..
T Consensus 180 LDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~--~Gql 235 (325)
T COG4586 180 LDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID--QGQL 235 (325)
T ss_pred ecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee--CCcE
Confidence 9999999999999999999999875 788999999965 557899999843 5543
No 371
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=7.9e-21 Score=156.70 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=120.7
Q ss_pred hhcccccceeeeccceee------chhhHHHHhh-hhhcc----chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFIS-MEAMT----KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT 127 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l-~~l~~----~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~ 127 (264)
.-++-++||+|.+||++. ||||||+.-+ ..+.. +|+...++++ +..+... .+
T Consensus 15 ~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~-----l~~lPa~------------qR 77 (213)
T COG4136 15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQR-----LDMLPAA------------QR 77 (213)
T ss_pred ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCee-----ccccchh------------hh
Confidence 345668999999999997 9999999644 33332 4455554432 3333321 13
Q ss_pred hhhhHHHh--hcCCCcCCCC----------CCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 128 DFGSIFSL--LLPGSQAKLS----------PPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 128 ~f~~vf~~--L~~g~~~~l~----------~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+.|..||. |||..++.-+ -....+.+...+.+.|+.+..++.|.+||||||.|||+-|++ +..|
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~L----la~P 153 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRAL----LAQP 153 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHH----HhCc
Confidence 45666664 5554433211 111223455667788999999999999999999999998775 4678
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEe
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKF 249 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~ 249 (264)
++++||||++.||..-+..+.+++-.... +.-+|.||||..-.....|++.+-|
T Consensus 154 k~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~~~ 209 (213)
T COG4136 154 KALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEMAQ 209 (213)
T ss_pred ceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeeeeh
Confidence 99999999999999999999998765332 5678999999887776667777544
No 372
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=2.3e-20 Score=158.43 Aligned_cols=205 Identities=20% Similarity=0.190 Sum_probs=140.5
Q ss_pred HHHHHHHHHHhhccccc--ccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHH
Q psy17516 27 KAQLSLRNEENQFKVGA--MVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIV 96 (264)
Q Consensus 27 ~a~~~~~~~~~~y~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~ 96 (264)
.++++++++.+.|..+. ++.. .-..-+.|||++++|..++ ||||||.+++.+. |+.|+++
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~----------~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il 71 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQ----------TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEIL 71 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhh----------hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEE
Confidence 46788888888777442 2211 1122345999999999887 9999999999764 5677888
Q ss_pred HhhHHHHHHHHHhhhHHH-HHHHHHHHHHhhhhhh---hHHHhhcCCC---cCCCCCCchhhHHHhHHHHcCC-Cccccc
Q psy17516 97 ESDRAKLLKVIEELDEKK-KIALREAWLKVNTDFG---SIFSLLLPGS---QAKLSPPAGKDILDGLEVNVAF-GGLWKE 168 (264)
Q Consensus 97 ~~~~~~l~~~I~~l~~~~-~~~~~~~~~~v~~~f~---~vf~~L~~g~---~~~l~~~~~~~~~~~l~~~v~l-~~~~~~ 168 (264)
+++.. +.--|-.- ...+|..||+.+..|. .|=+ ++.+. .-.+.........-.-+..||+ |+..+-
T Consensus 72 ~n~~~-----L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGq-iLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~ 145 (267)
T COG4167 72 INDHP-----LHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQ-ILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY 145 (267)
T ss_pred ECCcc-----ccccchHhhhhheeeeecCCccccChhhhhhh-HhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc
Confidence 88753 21111111 1223334555544432 1111 11110 0112222233445556678898 678899
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh-hcccee
Q psy17516 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIF 245 (264)
Q Consensus 169 ~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~ 245 (264)
+|..||-|||||||+|||+ .-.|.++++||.-++||..-+..+.++..++.+ +..+|.||.+.++++ .+|.++
T Consensus 146 ~~~~la~~QKQRVaLARAL----IL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~vi 221 (267)
T COG4167 146 YPHMLAPGQKQRVALARAL----ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVL 221 (267)
T ss_pred chhhcCchhHHHHHHHHHH----hcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEE
Confidence 9999999999999999886 346799999999999999999999999888764 788999999999996 699988
Q ss_pred EEEeeCCe
Q psy17516 246 RTKFVDGN 253 (264)
Q Consensus 246 ~v~~~~g~ 253 (264)
- |..|.
T Consensus 222 V--M~EG~ 227 (267)
T COG4167 222 V--MHEGE 227 (267)
T ss_pred E--EecCc
Confidence 7 55664
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=1.4e-19 Score=159.81 Aligned_cols=92 Identities=35% Similarity=0.584 Sum_probs=82.6
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccce
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVI 244 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l 244 (264)
..++.+..||||||||++||++++....+||+++++||||++||+.+...+.+.|+++.+++++|++||+......||++
T Consensus 151 ~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 151 DEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKF 230 (243)
T ss_pred cccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEE
Confidence 34678999999999999999998643346789999999999999999999999999987778899999999999999999
Q ss_pred eEEEeeCCeEEE
Q psy17516 245 FRTKFVDGNSNV 256 (264)
Q Consensus 245 ~~v~~~~g~s~i 256 (264)
+.+...+|+|+|
T Consensus 231 ~~l~~~~~~~~~ 242 (243)
T cd03272 231 YGVKFRNKVSTI 242 (243)
T ss_pred EEEEEECCEEee
Confidence 999988999987
No 374
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=3.2e-20 Score=163.35 Aligned_cols=175 Identities=18% Similarity=0.172 Sum_probs=130.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHH---hhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLK---VNTD 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~---v~~~ 128 (264)
..++||||++++||.++ |||||||+++++ .|++|.+...++ +..+= .+-..|+- -.++
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~------v~~li-----~lg~Gf~pelTGreN 109 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK------VAPLI-----ELGAGFDPELTGREN 109 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce------Eehhh-----hcccCCCcccchHHH
Confidence 45667999999999998 999999999976 466777777664 22110 00000100 0011
Q ss_pred hhhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCC
Q psy17516 129 FGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208 (264)
Q Consensus 129 f~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD 208 (264)
+ .+..+++|.+ ..+.++..+.+.....|.++.++++...|-|++.|+|.|.+. ..+|++||+||..|..|
T Consensus 110 i--~l~~~~~G~~----~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~----~~~pdILllDEvlavGD 179 (249)
T COG1134 110 I--YLRGLILGLT----RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVAT----HVEPDILLLDEVLAVGD 179 (249)
T ss_pred H--HHHHHHhCcc----HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhh----hcCCCEEEEehhhhcCC
Confidence 1 1223444543 234455677777788899999999999999999999997665 46889999999999999
Q ss_pred HHHHHHHHHHHHHh-hcCCeEEEEEeCcchH-hhccceeEEEeeCCeEEEE
Q psy17516 209 LSHTQNIGQMLKRH-FKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSNVT 257 (264)
Q Consensus 209 ~~~~~~i~~ll~~~-~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~i~ 257 (264)
+.-+++-.+.+.++ .++.++|+|||+...+ ++||+.+- +++|..+..
T Consensus 180 ~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~--l~~G~i~~~ 228 (249)
T COG1134 180 AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIW--LEHGQIRME 228 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEE--EeCCEEEEc
Confidence 99999999999998 5578999999999987 68999987 678877543
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.81 E-value=1.2e-20 Score=184.16 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=113.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
+++.+++||.|.+|+-++ +||||||+++.+.. ..|.+.+...- .|.-+++.. ..+ . .-.
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v----~igyf~Q~~-~~l-------~-~~~ 401 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETV----KIGYFDQHR-DEL-------D-PDK 401 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCce----EEEEEEehh-hhc-------C-ccC
Confidence 468899999999999998 99999999885432 22322222110 011111111 000 0 001
Q ss_pred hHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 131 SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 131 ~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++++.+..+.. ...+..+.+.+..+++++ ...+++..||||||.|+++|+++ +.+|.+|||||||++||.
T Consensus 402 t~~d~l~~~~~-----~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll----~~~pNvLiLDEPTNhLDi 472 (530)
T COG0488 402 TVLEELSEGFP-----DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL----LQPPNLLLLDEPTNHLDI 472 (530)
T ss_pred cHHHHHHhhCc-----cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHh----ccCCCEEEEcCCCccCCH
Confidence 23333322210 101334566677888875 45788999999999999998775 589999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEeCcchHh-hccceeEE
Q psy17516 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFS-NANVIFRT 247 (264)
Q Consensus 210 ~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~-~ad~l~~v 247 (264)
.+...+.+.|..+ .+++|+||||..+++ .|++++.+
T Consensus 473 ~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~ 509 (530)
T COG0488 473 ESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLV 509 (530)
T ss_pred HHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEE
Confidence 9999999999886 478999999999985 68999884
No 376
>KOG0061|consensus
Probab=99.81 E-value=1.7e-20 Score=186.64 Aligned_cols=177 Identities=20% Similarity=0.222 Sum_probs=125.6
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhc-----cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-----TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT 127 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-----~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~ 127 (264)
+.++++||..+++||++| |||||||+++++.. ..|.++.+|+. . ....++.....|.|
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~--------~---~~~~~~~~s~yV~Q 111 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP--------R---DSRSFRKISGYVQQ 111 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc--------C---chhhhhheeEEEcc
Confidence 678899999999999998 99999999996643 34567777632 1 11223322222222
Q ss_pred hh---h--hHHHhhcCCCcCCCC----CCchhhHHHhHHHHcCCCcccccccC-----CCCHHHHHHHHHHHHHHHhhcC
Q psy17516 128 DF---G--SIFSLLLPGSQAKLS----PPAGKDILDGLEVNVAFGGLWKESLG-----ELSGGQRSLVALSLVLAMLLFK 193 (264)
Q Consensus 128 ~f---~--~vf~~L~~g~~~~l~----~~~~~~~~~~l~~~v~l~~~~~~~~~-----~LSGGekqrvaiA~~la~~l~~ 193 (264)
.- + +|.+.+......++. ..+.+++++.+...+|+..-++..++ .+|||||+||+||.- ++.
T Consensus 112 dD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E----ll~ 187 (613)
T KOG0061|consen 112 DDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE----LLT 187 (613)
T ss_pred cccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH----HHc
Confidence 11 1 333332211111222 12334577889999999987777776 599999999999865 468
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcc--hHhhccceeEEEeeCC
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEG--MFSNANVIFRTKFVDG 252 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~--~~~~ad~l~~v~~~~g 252 (264)
+|+++++||||+|||..++..+.++|+++++ +.++|+.=|.+. +++.-|+++- +..|
T Consensus 188 ~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~l--Ls~G 247 (613)
T KOG0061|consen 188 DPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLL--LSEG 247 (613)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhh--hcCC
Confidence 9999999999999999999999999999986 566666778765 6788999887 4466
No 377
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.81 E-value=9.7e-20 Score=158.56 Aligned_cols=85 Identities=45% Similarity=0.674 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEe-
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKF- 249 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~- 249 (264)
..||||||.+++||+.||...+.|+|||+||||+++||+.++..+.++|++..++.||||+||++.+++.||+.|+|+|
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~~~ 214 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVTMV 214 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEEEC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4999999999999999999999999999999999999999999999999999888999999999999999999999998
Q ss_pred eCCeEE
Q psy17516 250 VDGNSN 255 (264)
Q Consensus 250 ~~g~s~ 255 (264)
++|+|.
T Consensus 215 ~~g~~~ 220 (220)
T PF02463_consen 215 ENGVSA 220 (220)
T ss_dssp CTTCE-
T ss_pred ccccCC
Confidence 579983
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.80 E-value=8.9e-20 Score=158.90 Aligned_cols=93 Identities=22% Similarity=0.221 Sum_probs=75.4
Q ss_pred cCCCcccccccCCCCHHHHHHHHHHHHHHHhh-c-----CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEE
Q psy17516 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLL-F-----KPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVS 232 (264)
Q Consensus 160 v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l-~-----~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVT 232 (264)
.++.+..++++..|||||+||++||+++|..- + .+|+++++||||++||+.....+.++|+++.+ +.++|+||
T Consensus 111 g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~it 190 (213)
T cd03279 111 GEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVIS 190 (213)
T ss_pred cchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 34556778899999999999999999987421 1 36789999999999999999999999998875 67999999
Q ss_pred eCcchHhh-ccceeEEEeeC-CeE
Q psy17516 233 LKEGMFSN-ANVIFRTKFVD-GNS 254 (264)
Q Consensus 233 H~~~~~~~-ad~l~~v~~~~-g~s 254 (264)
|+...... ||+++- +.+ |+|
T Consensus 191 H~~~~~~~~~~~i~~--~~~~~~~ 212 (213)
T cd03279 191 HVEELKERIPQRLEV--IKTPGGS 212 (213)
T ss_pred CchHHHHhhCcEEEE--EecCCCC
Confidence 99987754 566555 444 665
No 379
>PRK03918 chromosome segregation protein; Provisional
Probab=99.77 E-value=1.6e-17 Score=171.06 Aligned_cols=97 Identities=30% Similarity=0.389 Sum_probs=84.9
Q ss_pred CcccccccCCCCHHHHHHHHHHH--HHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh
Q psy17516 163 GGLWKESLGELSGGQRSLVALSL--VLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS 239 (264)
Q Consensus 163 ~~~~~~~~~~LSGGekqrvaiA~--~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~ 239 (264)
.+....++..|||||+++++||+ ++|++++.+|+++|+||||++||+.++..+.++|..+.. +.|+|||||+..+..
T Consensus 779 ~~g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~ 858 (880)
T PRK03918 779 YQGKERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKD 858 (880)
T ss_pred CCCCcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 34446788999999999999986 456667889999999999999999999999999988764 578999999999999
Q ss_pred hccceeEEEeeCCeEEEEEe
Q psy17516 240 NANVIFRTKFVDGNSNVTRT 259 (264)
Q Consensus 240 ~ad~l~~v~~~~g~s~i~~~ 259 (264)
.||+++.+...+|+|+|...
T Consensus 859 ~~d~~~~l~~~~~~s~~~~~ 878 (880)
T PRK03918 859 AADYVIRVSLEGGVSKVEVV 878 (880)
T ss_pred hCCeEEEEEecCCeeEEEec
Confidence 99999998888999998754
No 380
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=1.6e-18 Score=154.40 Aligned_cols=94 Identities=34% Similarity=0.589 Sum_probs=81.1
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccc
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANV 243 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~ 243 (264)
+.++++.+||||||||++||++++...+.||+++|+||||++||+..+..+.++|+++++ +.++|+|||+..+++.||+
T Consensus 148 ~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~ 227 (247)
T cd03275 148 KRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADA 227 (247)
T ss_pred hhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCe
Confidence 344556999999999999999987544567899999999999999999999999999875 7899999999999999999
Q ss_pred eeEEEee-C-CeEEEEE
Q psy17516 244 IFRTKFV-D-GNSNVTR 258 (264)
Q Consensus 244 l~~v~~~-~-g~s~i~~ 258 (264)
+|.++.. + |.|++..
T Consensus 228 i~~~~~~~~~~~~~~~~ 244 (247)
T cd03275 228 LVGVYRDQECNSSKVLT 244 (247)
T ss_pred EEEEEecCCCCcceEEe
Confidence 9998653 2 7787764
No 381
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.77 E-value=1.1e-19 Score=146.45 Aligned_cols=122 Identities=25% Similarity=0.369 Sum_probs=81.3
Q ss_pred cccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHH
Q psy17516 63 SMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFS 134 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~ 134 (264)
+++||++++|++++ ||||||++++.+.. .+|.+.+.+.. +...+ ...++ ..++++++
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~-----~~~~~---~~~~~-------~~i~~~~~ 66 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKD-----ISDID---IEELR-------RRIGYVPQ 66 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEE-----GTTSH---HHHHH-------HTEEEEES
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccc-----ccccc---ccccc-------cccccccc
Confidence 57999999999997 99999999987653 45666666542 33311 12222 33444444
Q ss_pred h--hcCCCcCCCCCCchhhHHHhHHHHcCCCccccccc----CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 135 L--LLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESL----GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 135 ~--L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~----~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
. ++++.+..-. ........++..+++.+..++.+ ..||||||||++||+++ +++|+++|+|||||
T Consensus 67 ~~~~~~~~tv~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al----~~~~~llllDEPt~ 137 (137)
T PF00005_consen 67 DPQLFPGLTVREN--ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARAL----LKNPKLLLLDEPTN 137 (137)
T ss_dssp SHCHHTTSBHHHH--HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHH----HTTSSEEEEESTTT
T ss_pred ccccccccccccc--cccccccccccccccccccccccccccchhhHHHHHHHHHHHHH----HcCCCEEEEeCCCC
Confidence 3 3333321100 12234566666777766555555 99999999999999876 47999999999996
No 382
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=2e-18 Score=149.18 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=72.1
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc---CC-eEEEEEeCcchH
Q psy17516 163 GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK---TS-QFIIVSLKEGMF 238 (264)
Q Consensus 163 ~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~---~~-q~IiVTH~~~~~ 238 (264)
.+..++++.+||||||||++||++++++.+.+|+++||||||++||+.++..+.++|++... ++ ++|++||+...+
T Consensus 100 ~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 100 NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 56678899999999999999999987666789999999999999999999999999988643 33 567888999888
Q ss_pred hhccceeE
Q psy17516 239 SNANVIFR 246 (264)
Q Consensus 239 ~~ad~l~~ 246 (264)
...|++--
T Consensus 180 ~~~d~v~~ 187 (198)
T cd03276 180 ASSDDVKV 187 (198)
T ss_pred ccccceeE
Confidence 77787644
No 383
>KOG0054|consensus
Probab=99.75 E-value=1.5e-18 Score=182.39 Aligned_cols=174 Identities=19% Similarity=0.257 Sum_probs=127.3
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
+..++++||+|++||-++ ||||||...+--+ +..|.+.++|.+ |.++. ...+| ..++
T Consensus 1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvd-----I~~ig---L~dLR-------srls 1217 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVD-----ISKIG---LHDLR-------SRLS 1217 (1381)
T ss_pred cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCee-----ccccc---HHHHH-------hcCe
Confidence 356678999999999887 9999999877322 356788888864 66665 33444 3455
Q ss_pred hHHHh--hcCCCcCCCCCC--c--hhhHHHhHHHHcCC-------Ccccc----cccCCCCHHHHHHHHHHHHHHHhhcC
Q psy17516 131 SIFSL--LLPGSQAKLSPP--A--GKDILDGLEVNVAF-------GGLWK----ESLGELSGGQRSLVALSLVLAMLLFK 193 (264)
Q Consensus 131 ~vf~~--L~~g~~~~l~~~--~--~~~~~~~l~~~v~l-------~~~~~----~~~~~LSGGekqrvaiA~~la~~l~~ 193 (264)
-|.|. ||.| +.+.+++ + .++.+-..++.+++ +++.+ ....++|-||||+++||||+ ++
T Consensus 1218 IIPQdPvLFsG-TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL----Lr 1292 (1381)
T KOG0054|consen 1218 IIPQDPVLFSG-TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL----LR 1292 (1381)
T ss_pred eeCCCCceecC-ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH----hc
Confidence 55553 4443 4433221 1 12222222333332 33333 34568999999999998875 68
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++++++|||.||+.|++.-..|-+.|++..++.|+|.|.||..++--+||++= |++|..
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlV--ld~G~v 1351 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLV--LDAGRV 1351 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEE--eeCCeE
Confidence 99999999999999999999999999998889999999999999999999987 778864
No 384
>KOG0054|consensus
Probab=99.75 E-value=2.6e-18 Score=180.73 Aligned_cols=166 Identities=21% Similarity=0.259 Sum_probs=113.9
Q ss_pred cccccceeeeccceee------chhhHHHHhh-hhhcc-chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFIS-MEAMT-KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l-~~l~~-~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
-++++||+|++|++++ ||||+||..+ ++++. +|.+.+.|. +.=..+ ..+- .-++|
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------iaYv~Q---~pWI--------~ngTv 598 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------VAYVPQ---QPWI--------QNGTV 598 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------EEEecc---ccHh--------hCCcH
Confidence 6779999999999998 9999999866 44543 454444442 111110 0110 01466
Q ss_pred HHhhcCCCcCCCCCCchhhHHHhHHHHcCCC--------c---ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee
Q psy17516 133 FSLLLPGSQAKLSPPAGKDILDGLEVNVAFG--------G---LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201 (264)
Q Consensus 133 f~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~--------~---~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD 201 (264)
-++++.|..- + +++...+...+.|. + ..-.+.-+||||||||++|||| .++++++||||
T Consensus 599 reNILFG~~~-----d-~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARA----VY~~adIYLLD 668 (1381)
T KOG0054|consen 599 RENILFGSPY-----D-EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARA----VYQDADIYLLD 668 (1381)
T ss_pred HHhhhcCccc-----c-HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHH----HhccCCEEEEc
Confidence 6665544321 1 11222222222221 1 1234677999999999999876 58999999999
Q ss_pred cCCCCCCHHHHHHHHH-HHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 202 EVDAALDLSHTQNIGQ-MLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 202 EPta~LD~~~~~~i~~-ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
-|.||+|.+....+.+ .|+.+-++.|.|+|||....++.||.++- |+||...
T Consensus 669 DplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iiv--l~~G~I~ 721 (1381)
T KOG0054|consen 669 DPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV--LKDGKIV 721 (1381)
T ss_pred CcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEE--ecCCeEe
Confidence 9999999999998887 45455567899999999999999999998 8898764
No 385
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.4e-18 Score=159.12 Aligned_cols=171 Identities=20% Similarity=0.254 Sum_probs=124.0
Q ss_pred ccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL 135 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~ 135 (264)
-||+++++||++. ||||||+..+.++ |++|+++.+|+ .++.+..+.+|.-|..|...+ ..|..
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~--------pV~~e~ledYR~LfSavFsDy-hLF~~ 411 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK--------PVSAEQLEDYRKLFSAVFSDY-HLFDQ 411 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc--------cCCCCCHHHHHHHHHHHhhhH-hhhHh
Confidence 4899999999985 9999999988664 66788888885 466667778886665544443 35555
Q ss_pred hcCCCcCCCCCCchhhHHHhHHHHcCCCcc---cc--cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHH
Q psy17516 136 LLPGSQAKLSPPAGKDILDGLEVNVAFGGL---WK--ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210 (264)
Q Consensus 136 L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~---~~--~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~ 210 (264)
++.+. ..-++. ..+.++.++.+.++ .+ -.+..||-|||.|+|+-.| ++.+-|++++||=-|.-||.
T Consensus 412 ll~~e-~~as~q----~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~A----llEeR~Ilv~DEWAADQDPa 482 (546)
T COG4615 412 LLGPE-GKASPQ----LIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLA----LLEERDILVLDEWAADQDPA 482 (546)
T ss_pred hhCCc-cCCChH----HHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHH----HHhhCCeEEeehhhccCChH
Confidence 55332 211122 23333334443332 22 2456899999999998554 46788999999999999999
Q ss_pred HHHHHHHHHH-Hhh-cCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 211 HTQNIGQMLK-RHF-KTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 211 ~~~~i~~ll~-~~~-~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
-+..+...+- .+. .+.|++.||||+.-+..|||++. |++|..
T Consensus 483 FRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~--~~~G~~ 526 (546)
T COG4615 483 FRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE--MRNGQL 526 (546)
T ss_pred HHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHH--HhcCce
Confidence 9999988554 344 37889999999999999999999 778754
No 386
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.74 E-value=5.9e-18 Score=181.94 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=79.9
Q ss_pred HHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEe
Q psy17516 156 LEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSL 233 (264)
Q Consensus 156 l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH 233 (264)
++..+|+.+. .++++.+|||||+||++||++++. -+.+|+++||||||++||+.++..+.++|+++.+ +.++|+|||
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~-~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLA-PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhh-cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5667899876 789999999999999999998742 1358899999999999999999999999999865 678999999
Q ss_pred CcchHhhccceeEE
Q psy17516 234 KEGMFSNANVIFRT 247 (264)
Q Consensus 234 ~~~~~~~ad~l~~v 247 (264)
+...+..||+++-+
T Consensus 871 dl~~i~~aDrVi~L 884 (1809)
T PRK00635 871 NMHVVKVADYVLEL 884 (1809)
T ss_pred CHHHHHhCCEEEEE
Confidence 99999999999873
No 387
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.73 E-value=1.7e-16 Score=155.90 Aligned_cols=93 Identities=24% Similarity=0.239 Sum_probs=80.1
Q ss_pred cccccccCCCCHHHHHHHHHHHHHH-Hhhc-----CCCCEEEeecCC-CCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 164 GLWKESLGELSGGQRSLVALSLVLA-MLLF-----KPAPLYILDEVD-AALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 164 ~~~~~~~~~LSGGekqrvaiA~~la-~~l~-----~~~~illlDEPt-a~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
+..+.++..|||||+||++||++|+ ++++ .+|+++|||||| ++||+.....+.++|.++ ++.++|||||++.
T Consensus 460 g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~ 538 (562)
T PHA02562 460 GREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDH 538 (562)
T ss_pred CCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchh
Confidence 3344578999999999999999987 3444 478999999998 789999999999999998 6789999999999
Q ss_pred hHhhccceeEEEeeCCeEEEE
Q psy17516 237 MFSNANVIFRTKFVDGNSNVT 257 (264)
Q Consensus 237 ~~~~ad~l~~v~~~~g~s~i~ 257 (264)
+...||+++.+.-.++.|+++
T Consensus 539 ~~~~~d~~~~l~~~~~~~~~~ 559 (562)
T PHA02562 539 DPQKFDRHLKMEKVGRFSVMV 559 (562)
T ss_pred chhhhhcEEEEEEECCeeEEe
Confidence 999999999865556888776
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=2e-17 Score=170.45 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=77.3
Q ss_pred HHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEe
Q psy17516 156 LEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSL 233 (264)
Q Consensus 156 l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH 233 (264)
++..+|+.. ..++++.+|||||+||++||++|+.- ..+|++|||||||++||+.+...+.++|+++.+ +.++|+|||
T Consensus 811 ~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~-~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H 889 (924)
T TIGR00630 811 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR-STGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEH 889 (924)
T ss_pred HHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhc-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 445678865 46889999999999999999987521 125799999999999999999999999999864 689999999
Q ss_pred CcchHhhccceeE
Q psy17516 234 KEGMFSNANVIFR 246 (264)
Q Consensus 234 ~~~~~~~ad~l~~ 246 (264)
+...+..||+++.
T Consensus 890 ~~~~i~~aD~ii~ 902 (924)
T TIGR00630 890 NLDVIKTADYIID 902 (924)
T ss_pred CHHHHHhCCEEEE
Confidence 9999999999888
No 389
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=9.9e-19 Score=152.86 Aligned_cols=89 Identities=19% Similarity=0.294 Sum_probs=74.8
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcC---CeEEEEEeCc-chHhh
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT---SQFIIVSLKE-GMFSN 240 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~---~q~IiVTH~~-~~~~~ 240 (264)
..+.++.+|||||||++++|.++|++++.+|+++++||||++||+.++..+.++|.+..+. +++|+|||+. ..++.
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence 3566889999999999999998888888999999999999999999999999999987643 4799999985 45578
Q ss_pred ccceeEEEeeCCe
Q psy17516 241 ANVIFRTKFVDGN 253 (264)
Q Consensus 241 ad~l~~v~~~~g~ 253 (264)
||++.-+-+.+|.
T Consensus 199 ~~~~~v~~l~~g~ 211 (213)
T cd03277 199 HEKMTVLCVYNGP 211 (213)
T ss_pred cCceEEEEEecCc
Confidence 8877444456764
No 390
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=1.1e-17 Score=172.70 Aligned_cols=87 Identities=25% Similarity=0.378 Sum_probs=76.7
Q ss_pred HHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCC---CEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEE
Q psy17516 156 LEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPA---PLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFII 230 (264)
Q Consensus 156 l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~---~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~Ii 230 (264)
++..+|+.. ..++++..|||||+||++||++++ .+| +++||||||++||+..+..+.++|+++.+ +.++|+
T Consensus 813 ~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~----~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 813 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELS----KRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHCCCCcccccCCcccCCHHHHHHHHHHHHHh----cCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 455678865 468899999999999999998864 566 89999999999999999999999998864 679999
Q ss_pred EEeCcchHhhccceeE
Q psy17516 231 VSLKEGMFSNANVIFR 246 (264)
Q Consensus 231 VTH~~~~~~~ad~l~~ 246 (264)
|||+...+..||+++.
T Consensus 889 itH~~~~i~~aD~ii~ 904 (943)
T PRK00349 889 IEHNLDVIKTADWIID 904 (943)
T ss_pred EecCHHHHHhCCEEEE
Confidence 9999999999998887
No 391
>KOG0059|consensus
Probab=99.71 E-value=1.4e-17 Score=172.04 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=137.3
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhh--hccchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISME--AMTKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~~~~~~~~~~ 99 (264)
.....+++.+.|..+. + .-+++||.|++||..+ |||||+++++.+ .++.|+.++.+
T Consensus 563 ~~~~~~~L~k~y~~~~---------------~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g 626 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD---------------G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKG 626 (885)
T ss_pred ceEEEcceeeeecchh---------------h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEec
Confidence 3445566777776221 1 4457999999999998 999999999855 35566666644
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCc-----------CCCCCCchhhHHHhHHHHcCCCccc
Q psy17516 100 RAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQ-----------AKLSPPAGKDILDGLEVNVAFGGLW 166 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~-----------~~l~~~~~~~~~~~l~~~v~l~~~~ 166 (264)
.+ +..-.. + ... .+.+|+..|. +.+..+ .++...+....++.++..+++.+..
T Consensus 627 ~~-----i~~~~~-~-~~~-------~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~ 692 (885)
T KOG0059|consen 627 HD-----ITVSTD-F-QQV-------RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYA 692 (885)
T ss_pred Cc-----cccccc-h-hhh-------hhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhh
Confidence 32 211000 0 001 1223322221 111111 1223334455678888899999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCC-eEEEEEeCcchHhh-ccce
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTS-QFIIVSLKEGMFSN-ANVI 244 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~-q~IiVTH~~~~~~~-ad~l 244 (264)
+++.+.+|||+|+|+.+|.+ ++.+|++++|||||+|+||..++.+++++.+..+++ .+|+.||..+.++. |||+
T Consensus 693 ~~~~~~ySgG~kRkLs~aia----lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 693 NKQVRTYSGGNKRRLSFAIA----LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRT 768 (885)
T ss_pred ccchhhCCCcchhhHHHHHH----HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhh
Confidence 99999999999999999765 468899999999999999999999999999988765 89999999888864 8988
Q ss_pred eEEEeeCCeEEEE
Q psy17516 245 FRTKFVDGNSNVT 257 (264)
Q Consensus 245 ~~v~~~~g~s~i~ 257 (264)
-- |.+|..+..
T Consensus 769 aI--mv~G~l~ci 779 (885)
T KOG0059|consen 769 AI--MVIGQLRCI 779 (885)
T ss_pred he--eecCeeEEe
Confidence 66 678876654
No 392
>KOG0927|consensus
Probab=99.70 E-value=8.2e-17 Score=154.45 Aligned_cols=184 Identities=18% Similarity=0.199 Sum_probs=114.2
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhhh--hc--cchhHHHhhHH-------HHHHHHHhhhH--HHHHHH
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISME--AM--TKKSIVESDRA-------KLLKVIEELDE--KKKIAL 118 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~--l~--~~~~~~~~~~~-------~l~~~I~~l~~--~~~~~~ 118 (264)
-.++.+|+.|++.+|+-++ |||||+|+++.+ .| ..-..+....+ .+...+..-+. .+.+.+
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~ 166 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYL 166 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHH
Confidence 4578889999999999887 999999998743 22 11122222211 11111101110 011111
Q ss_pred HHHHHHh-hh----hhhhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC-CcccccccCCCCHHHHHHHHHHHHHHHhhc
Q psy17516 119 REAWLKV-NT----DFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF-GGLWKESLGELSGGQRSLVALSLVLAMLLF 192 (264)
Q Consensus 119 ~~~~~~v-~~----~f~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l-~~~~~~~~~~LSGGekqrvaiA~~la~~l~ 192 (264)
.+-++.- .. .+..++..+ ........+..+..++.-+|. +....+....||||++.|+||||++ +
T Consensus 167 ~E~l~~~~d~~~~~~l~~~~~r~-----~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~L----f 237 (614)
T KOG0927|consen 167 AEDLAQACDDKEKDELDELYERL-----DEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARAL----F 237 (614)
T ss_pred HHHHHhhccchhhhHHHHHHHHH-----HhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHH----h
Confidence 1111111 00 011111111 011122222334455555555 4567889999999999999998874 6
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeC
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVD 251 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~ 251 (264)
..|.++||||||++||......+-++|.++... +++|++|...++ ..|..|+.+++..
T Consensus 238 ~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 238 QKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKK 296 (614)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccc
Confidence 889999999999999999999999999887543 788999999988 5699999865433
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.70 E-value=1.1e-17 Score=158.05 Aligned_cols=97 Identities=23% Similarity=0.341 Sum_probs=81.0
Q ss_pred HhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEE
Q psy17516 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIV 231 (264)
Q Consensus 154 ~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiV 231 (264)
.++..-+++....++++..|||||.||||||.+| .+++++|+||||.|.||.+.+..+.+.|+++.. +.+.+||
T Consensus 437 ~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L----~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vV 512 (591)
T COG1245 437 TEIVKPLNLEDLLERPVDELSGGELQRVAIAAAL----SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVV 512 (591)
T ss_pred HhhcCccchHHHHhcccccCCchhHHHHHHHHHh----ccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEE
Confidence 4444556777788899999999999999998765 579999999999999999999999999999764 5788899
Q ss_pred EeCcchHhh-ccceeEEEeeCCeE
Q psy17516 232 SLKEGMFSN-ANVIFRTKFVDGNS 254 (264)
Q Consensus 232 TH~~~~~~~-ad~l~~v~~~~g~s 254 (264)
-||.-+..+ +||++-..=+.|+.
T Consensus 513 dHDi~~~dyvsDr~ivF~GePg~~ 536 (591)
T COG1245 513 DHDIYMIDYVSDRLIVFEGEPGKH 536 (591)
T ss_pred ecceehhhhhhceEEEEecCCCcc
Confidence 999998875 89987654445543
No 394
>KOG0062|consensus
Probab=99.69 E-value=1.2e-16 Score=152.56 Aligned_cols=87 Identities=25% Similarity=0.313 Sum_probs=72.1
Q ss_pred HhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEE
Q psy17516 154 DGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232 (264)
Q Consensus 154 ~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVT 232 (264)
..++.-+|+.+ ...++..+||||-|-|+|||||+ +.+|+++||||||+.||..++.++-++|+.+. .|+||||
T Consensus 179 ~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAl----f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVS 252 (582)
T KOG0062|consen 179 DKILAGLGFTPEMQLQPTKSLSGGWRMRLALARAL----FAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVS 252 (582)
T ss_pred HHHHHhCCCCHHHHhccccccCcchhhHHHHHHHH----hcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEe
Confidence 33566678854 55678899999999999998874 67889999999999999999999999998764 7899999
Q ss_pred eCcchHh-hccceeE
Q psy17516 233 LKEGMFS-NANVIFR 246 (264)
Q Consensus 233 H~~~~~~-~ad~l~~ 246 (264)
||..... .|.-|+.
T Consensus 253 HDr~FLn~V~tdIIH 267 (582)
T KOG0062|consen 253 HDRNFLNTVCTDIIH 267 (582)
T ss_pred ccHHHHHHHHHHHHH
Confidence 9999874 4554543
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.69 E-value=7.2e-17 Score=140.09 Aligned_cols=82 Identities=24% Similarity=0.401 Sum_probs=72.5
Q ss_pred ccccCCCCHHHHHHHHHH--HHHHHhhcCCCCEEEeecCCCCCCHHHHH-HHHHHHHHhhc--CCeEEEEEeCcchHhhc
Q psy17516 167 KESLGELSGGQRSLVALS--LVLAMLLFKPAPLYILDEVDAALDLSHTQ-NIGQMLKRHFK--TSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA--~~la~~l~~~~~illlDEPta~LD~~~~~-~i~~ll~~~~~--~~q~IiVTH~~~~~~~a 241 (264)
++++..|||||+||++|| .++|++++.+|+++++|||+++||+.++. .+.++|+++.+ +.++|+|||+......|
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 678899999999997766 34566778999999999999999999999 99999998875 67999999999999999
Q ss_pred cceeEEE
Q psy17516 242 NVIFRTK 248 (264)
Q Consensus 242 d~l~~v~ 248 (264)
|+++.+.
T Consensus 190 d~i~~l~ 196 (204)
T cd03240 190 DHIYRVE 196 (204)
T ss_pred CEEEEEe
Confidence 9999854
No 396
>PRK01156 chromosome segregation protein; Provisional
Probab=99.69 E-value=1.4e-15 Score=157.38 Aligned_cols=93 Identities=29% Similarity=0.456 Sum_probs=80.9
Q ss_pred ccccCCCCHHHHHHHHHH--HHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh-c-C--CeEEEEEeCcchHhh
Q psy17516 167 KESLGELSGGQRSLVALS--LVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF-K-T--SQFIIVSLKEGMFSN 240 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA--~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~-~-~--~q~IiVTH~~~~~~~ 240 (264)
..++..|||||++++||| +|+|++++.+|++++|||||++||+.+...+.+++.... . + .|+|+|||+..+...
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~ 875 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence 457889999999999988 456667889999999999999999999999999987532 2 2 489999999999999
Q ss_pred ccceeEEEeeCCeEEEEEe
Q psy17516 241 ANVIFRTKFVDGNSNVTRT 259 (264)
Q Consensus 241 ad~l~~v~~~~g~s~i~~~ 259 (264)
||++|.++-.+|+|.|..+
T Consensus 876 ~d~ii~~~~~~~~s~v~~~ 894 (895)
T PRK01156 876 ADVAYEVKKSSGSSKVIPL 894 (895)
T ss_pred cCeEEEEEecCCeeEEeeC
Confidence 9999999888999998754
No 397
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.5e-16 Score=143.93 Aligned_cols=92 Identities=24% Similarity=0.306 Sum_probs=80.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEe
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKF 249 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~ 249 (264)
...|||||+||+++|++++.+.+++|+++++||||++||+.....+.++|+++.++.++|+|||++.++..||+++.+..
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEE
Confidence 34599999999999987653223599999999999999999999999999998777899999999999999999999766
Q ss_pred -eCCeEEEEEeec
Q psy17516 250 -VDGNSNVTRTVN 261 (264)
Q Consensus 250 -~~g~s~i~~~~~ 261 (264)
.+|+|+++++.+
T Consensus 248 ~~~~~~~~~~~~~ 260 (276)
T cd03241 248 EVEGGRTVTKVRE 260 (276)
T ss_pred ecCCCeEEEEhhh
Confidence 469999998765
No 398
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.68 E-value=2e-16 Score=134.65 Aligned_cols=82 Identities=49% Similarity=0.813 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccceeEEEeeC
Q psy17516 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIFRTKFVD 251 (264)
Q Consensus 173 LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~v~~~~ 251 (264)
|||||+||++||++++...+.+|+++++|||+++||+.+...+.++|.++.+ +.++|+|||+..++..||+++.+.-..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~~~ 174 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFVH 174 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEEeC
Confidence 9999999999999986544678999999999999999999999999998765 489999999999999999999986555
Q ss_pred CeE
Q psy17516 252 GNS 254 (264)
Q Consensus 252 g~s 254 (264)
++|
T Consensus 175 ~~~ 177 (178)
T cd03239 175 GVS 177 (178)
T ss_pred Ccc
Confidence 554
No 399
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.68 E-value=7.6e-17 Score=155.31 Aligned_cols=180 Identities=17% Similarity=0.213 Sum_probs=120.9
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh---
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG--- 130 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~--- 130 (264)
.+++||++.+||+++ ||.|-|+.++.+.. ..|++.++++. +.--+ -..+++.-+..+++...
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~-----v~~~s--p~~Ai~~Gi~~v~EDRk~~G 347 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKP-----VRIRS--PRDAIKAGIAYVPEDRKSEG 347 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEE-----ccCCC--HHHHHHcCCEeCCcccccCc
Confidence 568999999999998 99999998886643 34566666652 22111 11222211111111110
Q ss_pred -----hHHHhhcCC-CcC-----CCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 131 -----SIFSLLLPG-SQA-----KLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 131 -----~vf~~L~~g-~~~-----~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
.|.+++... ... .+...........+...+++. .-.++.+..||||-+|+|.|||.++ .+|+++
T Consensus 348 l~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~----~~p~vL 423 (500)
T COG1129 348 LVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA----TDPKVL 423 (500)
T ss_pred CcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh----cCCCEE
Confidence 233332111 100 111112223445555566664 3446889999999999999999875 688999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeC-cchHhhccceeEEEeeCCeE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLK-EGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~-~~~~~~ad~l~~v~~~~g~s 254 (264)
||||||.|.|-....+|.++|++++. +..+|+||-+ ++++..|||++- |.+|..
T Consensus 424 ilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlV--m~~Gri 479 (500)
T COG1129 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILV--MREGRI 479 (500)
T ss_pred EECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEE--EECCEE
Confidence 99999999999999999999999986 6788888877 667789999998 778865
No 400
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.67 E-value=2.5e-17 Score=139.10 Aligned_cols=178 Identities=20% Similarity=0.245 Sum_probs=122.8
Q ss_pred cceeeeccceee------chhhHHHHhhhhh-ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHH--HHhhhhh-hhHHH
Q psy17516 65 SSFSVKVGAMVK------APLRTLLFISMEA-MTKKSIVESDRAKLLKVIEELDEKKKIALREAW--LKVNTDF-GSIFS 134 (264)
Q Consensus 65 v~~~v~~Ge~~~------sGKSTLl~~l~~l-~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~--~~v~~~f-~~vf~ 134 (264)
.|.++..||++- +||||||--++++ +.+|++.+.|.. ++..+.....+-| +| |+-+--| --||+
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~-----l~~~~~~eLArhR-AYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQP-----LEAWSATELARHR-AYLSQQQTPPFAMPVWH 91 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcc-----hhHHhHhHHHHHH-HHHhhccCCcchhhhhh
Confidence 678899999884 9999999877665 446677766653 4333333333322 44 2111123 25777
Q ss_pred hhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHh--hcCC-CCEEEeecCCCCCCHHH
Q psy17516 135 LLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAML--LFKP-APLYILDEVDAALDLSH 211 (264)
Q Consensus 135 ~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~--l~~~-~~illlDEPta~LD~~~ 211 (264)
.|.....+ ......+..+...+++.+|..+.+++|||||.|||-+|-.+-.. -++| ..++++|||.++||.+.
T Consensus 92 YL~L~qP~----~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ 167 (248)
T COG4138 92 YLTLHQPD----KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ 167 (248)
T ss_pred hhhhcCch----HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHH
Confidence 65432211 11123456666778999999999999999999999998543110 1122 46999999999999999
Q ss_pred HHHHHHHHHHhhc-CCeEEEEEeCcc-hHhhccceeEEEeeCCeE
Q psy17516 212 TQNIGQMLKRHFK-TSQFIIVSLKEG-MFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 212 ~~~i~~ll~~~~~-~~q~IiVTH~~~-~~~~ad~l~~v~~~~g~s 254 (264)
...+-.+|.+++. +.++|+.+||.+ +...||+++- +..|+.
T Consensus 168 ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wL--L~rG~l 210 (248)
T COG4138 168 QSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWL--LKRGKL 210 (248)
T ss_pred HHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHH--HhcCeE
Confidence 9999999999886 778899999955 7899998866 335544
No 401
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=5.2e-16 Score=160.01 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=77.3
Q ss_pred HHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCC-CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEe
Q psy17516 157 EVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKP-APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSL 233 (264)
Q Consensus 157 ~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~-~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH 233 (264)
+..+|+... .++++.+|||||+|||+||++++. ++ |.+|||||||++||+..+..+.++|+++.+ +.++|+|||
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~---~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeH 547 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEH 547 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhh---CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456788665 689999999999999999998753 33 489999999999999999999999999875 679999999
Q ss_pred CcchHhhccceeEE
Q psy17516 234 KEGMFSNANVIFRT 247 (264)
Q Consensus 234 ~~~~~~~ad~l~~v 247 (264)
|...+..||+++.+
T Consensus 548 d~~~i~~aD~vi~L 561 (924)
T TIGR00630 548 DEETIRAADYVIDI 561 (924)
T ss_pred CHHHHhhCCEEEEe
Confidence 99999999999883
No 402
>KOG0927|consensus
Probab=99.64 E-value=3e-16 Score=150.59 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=77.7
Q ss_pred hhHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeE
Q psy17516 150 KDILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQF 228 (264)
Q Consensus 150 ~~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~ 228 (264)
.+....++-++|+.+ -...++++||+|||.||+.|++ .+++|.+++|||||++||......+.+.|.++ .+++
T Consensus 486 ~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l----~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggv 559 (614)
T KOG0927|consen 486 LEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARL----AVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGV 559 (614)
T ss_pred HHHHHHHHHHhCCCccccccchhhcccccchhHHHHHH----HhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCce
Confidence 345677788999985 4567889999999999999876 46899999999999999999999999999875 4679
Q ss_pred EEEEeCcchH-hhccceeE
Q psy17516 229 IIVSLKEGMF-SNANVIFR 246 (264)
Q Consensus 229 IiVTH~~~~~-~~ad~l~~ 246 (264)
|+||||-.++ ..|+.++.
T Consensus 560 v~vSHDfrlI~qVaeEi~~ 578 (614)
T KOG0927|consen 560 VLVSHDFRLISQVAEEIWV 578 (614)
T ss_pred eeeechhhHHHHHHHHhHh
Confidence 9999998877 57898866
No 403
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.64 E-value=7.5e-15 Score=145.19 Aligned_cols=86 Identities=24% Similarity=0.254 Sum_probs=73.8
Q ss_pred ccccccc-CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhcc
Q psy17516 164 GLWKESL-GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNAN 242 (264)
Q Consensus 164 ~~~~~~~-~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad 242 (264)
+...+++ ..|||||+||++||++++.....+|+++||||||++||+.+...+.++|++++++.|+|+|||++.++..||
T Consensus 431 g~~~~pl~~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad 510 (563)
T TIGR00634 431 GEPVKPLAKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHAD 510 (563)
T ss_pred CCCCCChhhhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcC
Confidence 3333444 689999999999999876432235799999999999999999999999999988899999999999999999
Q ss_pred ceeEEEe
Q psy17516 243 VIFRTKF 249 (264)
Q Consensus 243 ~l~~v~~ 249 (264)
++|.+.-
T Consensus 511 ~~~~l~k 517 (563)
T TIGR00634 511 AHFKVEK 517 (563)
T ss_pred eEEEEEE
Confidence 9999764
No 404
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.64 E-value=5.9e-16 Score=151.90 Aligned_cols=162 Identities=20% Similarity=0.216 Sum_probs=114.5
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhccchh--HHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMTKKS--IVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~~--~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
..+.++.+|+|++||-+- ||||||++.++++=+-++ +..-.. ...-|. +|.
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-------------~~~lfl------pQ~PY 466 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-------------SALLFL------PQRPY 466 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-------------CceEEe------cCCCC
Confidence 478899999999999764 999999999988755443 111110 000110 111
Q ss_pred h--hhHHHh-hcCCCcCCCCCCchhhHHHhHHHHcCCCcccc------cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 129 F--GSIFSL-LLPGSQAKLSPPAGKDILDGLEVNVAFGGLWK------ESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 129 f--~~vf~~-L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~------~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
+ |+.-+. ..|..... -.++.+..++.+|||++... +--..||||||||+|+||++ ++.|++++
T Consensus 467 ~p~GtLre~l~YP~~~~~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil----L~kP~~v~ 538 (604)
T COG4178 467 LPQGTLREALCYPNAAPD----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL----LHKPKWVF 538 (604)
T ss_pred CCCccHHHHHhCCCCCCC----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH----HcCCCEEE
Confidence 1 222222 22322111 12234556677888875432 33468999999999998875 68889999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRT 247 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v 247 (264)
|||.|+|||+.+..++.+++++...+.++|-|+|+...-...++.+.+
T Consensus 539 LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 539 LDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred EecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheee
Confidence 999999999999999999999977899999999999998888887764
No 405
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.63 E-value=1e-15 Score=144.64 Aligned_cols=89 Identities=20% Similarity=0.383 Sum_probs=79.4
Q ss_pred HHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEE
Q psy17516 152 ILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFII 230 (264)
Q Consensus 152 ~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~Ii 230 (264)
...++..++++.+.+++.+++|||||-||+|||.++ .++++||+||||++-||...+-.+.+.|+++++ +..+||
T Consensus 193 ~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l----~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViV 268 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAAL----LRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIV 268 (591)
T ss_pred cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHH----hccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEE
Confidence 456667788999999999999999999999998764 589999999999999999999999999999997 688999
Q ss_pred EEeCcchHhh-ccce
Q psy17516 231 VSLKEGMFSN-ANVI 244 (264)
Q Consensus 231 VTH~~~~~~~-ad~l 244 (264)
|-||..++.+ ||.+
T Consensus 269 VEHDLavLD~lsD~v 283 (591)
T COG1245 269 VEHDLAVLDYLSDFV 283 (591)
T ss_pred EechHHHHHHhhhee
Confidence 9999998875 6644
No 406
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.63 E-value=8.9e-16 Score=158.56 Aligned_cols=88 Identities=26% Similarity=0.356 Sum_probs=78.1
Q ss_pred HHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCC-CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEE
Q psy17516 156 LEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKP-APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVS 232 (264)
Q Consensus 156 l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~-~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVT 232 (264)
++..+|+.+. .++++.+|||||+|||+||++++. ++ |++|||||||++||+..+.++.++|+++.+ +.++|+||
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~---~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVe 548 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVE 548 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhh---CCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4567788765 789999999999999999998763 33 489999999999999999999999999875 68999999
Q ss_pred eCcchHhhccceeE
Q psy17516 233 LKEGMFSNANVIFR 246 (264)
Q Consensus 233 H~~~~~~~ad~l~~ 246 (264)
|+...+..||+++-
T Consensus 549 H~~~~i~~aD~vi~ 562 (943)
T PRK00349 549 HDEDTIRAADYIVD 562 (943)
T ss_pred CCHHHHHhCCEEEE
Confidence 99999989999987
No 407
>PRK10869 recombination and repair protein; Provisional
Probab=99.63 E-value=1.3e-14 Score=143.11 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEE
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTK 248 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~ 248 (264)
..|||||+||++||++++.....+||++||||||+|||......+.++|++++++.|+|+|||++.++..||+.|.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVS 506 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEe
Confidence 479999999999999987655568999999999999999999999999999988899999999999999999999975
No 408
>PRK02224 chromosome segregation protein; Provisional
Probab=99.63 E-value=1.2e-14 Score=150.16 Aligned_cols=128 Identities=25% Similarity=0.347 Sum_probs=85.5
Q ss_pred hhhhhhhHHHhhcCCC-cCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHh--hc------CCC
Q psy17516 125 VNTDFGSIFSLLLPGS-QAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAML--LF------KPA 195 (264)
Q Consensus 125 v~~~f~~vf~~L~~g~-~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~--l~------~~~ 195 (264)
+...+..+|..+++++ ...+...+ +. .+. .++.++. ...+..||||||+.++||+.+|.+ ++ .|+
T Consensus 739 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~--~i~-~~~~~g~-~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~ 812 (880)
T PRK02224 739 LERMLNETFDLVYQNDAYSHIELDG--EY--ELT-VYQKDGE-PLEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPL 812 (880)
T ss_pred HHHHHHHHHHHHcCCCCeeEEEecC--Cc--cee-eeCCCCC-ccChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 3456667788776542 22222111 10 110 1233332 346789999999955555433322 22 234
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhc-C-CeEEEEEeCcchHhhccceeEEEeeC--CeEEEEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFK-T-SQFIIVSLKEGMFSNANVIFRTKFVD--GNSNVTR 258 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~-~-~q~IiVTH~~~~~~~ad~l~~v~~~~--g~s~i~~ 258 (264)
|++|+||||++||+.++..+.++|..+.. + +|+|||||++.++..||++|.++-.. ..|+|++
T Consensus 813 ~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~~~~~~~~~~~ 879 (880)
T PRK02224 813 PPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVEKDPTTNRSSVER 879 (880)
T ss_pred CceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEeecCCCcCcccccC
Confidence 67999999999999999999999998864 3 58999999999999999999976433 3566665
No 409
>KOG0062|consensus
Probab=99.60 E-value=5e-15 Score=141.56 Aligned_cols=90 Identities=28% Similarity=0.386 Sum_probs=74.4
Q ss_pred HHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 157 EVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 157 ~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
+-.+|+++ ...+++..||||||.||++|.+ ..+.|-+|+|||||+.||..+...+...|+.+ ++.+|+||||.
T Consensus 466 l~~~Gl~g~la~~si~~LSGGQKsrvafA~~----~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~ 539 (582)
T KOG0062|consen 466 LGSFGLSGELALQSIASLSGGQKSRVAFAAC----TWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDE 539 (582)
T ss_pred HHhcCCCchhhhccccccCCcchhHHHHHHH----hcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcH
Confidence 34679875 5566789999999999999854 35778999999999999999999999888876 45699999999
Q ss_pred chHh-hccceeEEEeeCCeE
Q psy17516 236 GMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 236 ~~~~-~ad~l~~v~~~~g~s 254 (264)
+..+ .|+.++- .+||..
T Consensus 540 ~fi~~~c~E~Wv--ve~g~v 557 (582)
T KOG0062|consen 540 EFISSLCKELWV--VEDGKV 557 (582)
T ss_pred HHHhhcCceeEE--EcCCcE
Confidence 9886 5888888 447653
No 410
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.59 E-value=3.7e-15 Score=160.68 Aligned_cols=87 Identities=26% Similarity=0.330 Sum_probs=77.2
Q ss_pred HHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCCC--CEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEE
Q psy17516 157 EVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKPA--PLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVS 232 (264)
Q Consensus 157 ~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~~--~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVT 232 (264)
+..+|+... .++.+.+|||||+|||+||++++ .+| ++|||||||++||+..+..+.++|+++.+ +.++|+||
T Consensus 460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~----~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVe 535 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLG----AELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVE 535 (1809)
T ss_pred HHhccccCCCCCCchhhCCHHHHHHHHHHHHHh----cCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 346788766 68899999999999999998874 566 79999999999999999999999999864 67899999
Q ss_pred eCcchHhhccceeEE
Q psy17516 233 LKEGMFSNANVIFRT 247 (264)
Q Consensus 233 H~~~~~~~ad~l~~v 247 (264)
||..+++.||+++.+
T Consensus 536 Hd~~vi~~aDrVi~L 550 (1809)
T PRK00635 536 HDEQMISLADRIIDI 550 (1809)
T ss_pred CcHHHHHhCCEEEEE
Confidence 999999999999883
No 411
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.58 E-value=5.4e-15 Score=127.57 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=69.3
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHH-HHHHhhc-CCeEEEEEeCcchHhh
Q psy17516 163 GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQ-MLKRHFK-TSQFIIVSLKEGMFSN 240 (264)
Q Consensus 163 ~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~-ll~~~~~-~~q~IiVTH~~~~~~~ 240 (264)
.+......+.+|+|++|++.|+++ +.+|+++++|||+++||+.....+.. +++.+.+ +.++|++||+......
T Consensus 82 ~~~l~~~~s~fs~g~~~~~~i~~~-----~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~ 156 (200)
T cd03280 82 EQSIEQSLSTFSSHMKNIARILQH-----ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAY 156 (200)
T ss_pred hhhhhcCcchHHHHHHHHHHHHHh-----CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHH
Confidence 334456778999999999999765 36889999999999999999998864 6777654 6789999999888899
Q ss_pred ccceeEEEeeCCeE
Q psy17516 241 ANVIFRTKFVDGNS 254 (264)
Q Consensus 241 ad~l~~v~~~~g~s 254 (264)
||+++. +++|..
T Consensus 157 ~d~~~~--l~~g~l 168 (200)
T cd03280 157 AYKREG--VENASM 168 (200)
T ss_pred HhcCCC--eEEEEE
Confidence 999876 445544
No 412
>KOG0065|consensus
Probab=99.58 E-value=3.9e-16 Score=162.08 Aligned_cols=175 Identities=19% Similarity=0.166 Sum_probs=120.7
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhhhhccc----hhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMTK----KSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT 127 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~----~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~ 127 (264)
++.|+++|+==+++|.++| |||||||++|++..+. |+++++|.. .++ +.|.+.-..+.|
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p--------~~q---~tF~R~~GYvqQ 871 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFP--------KDQ---ETFARVSGYVEQ 871 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCee--------Cch---hhhccccceeec
Confidence 3578889999999999998 9999999999876543 345555531 121 345433222222
Q ss_pred h---hh--hHHHhhcCCCcCCC----CCCchhhHHHhHHHHcCCCcccccccCC----CCHHHHHHHHHHHHHHHhhcCC
Q psy17516 128 D---FG--SIFSLLLPGSQAKL----SPPAGKDILDGLEVNVAFGGLWKESLGE----LSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 128 ~---f~--~vf~~L~~g~~~~l----~~~~~~~~~~~l~~~v~l~~~~~~~~~~----LSGGekqrvaiA~~la~~l~~~ 194 (264)
+ .. +|.+.|.-....++ ...+..+.++.+...+++++.++.-++. ||.+||.|+.||--| .++|
T Consensus 872 ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVEL---vA~P 948 (1391)
T KOG0065|consen 872 QDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVEL---VANP 948 (1391)
T ss_pred ccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEE---ecCC
Confidence 1 11 33333321111111 1122225678888899999888887777 999999999997543 2344
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEE-EeCcc--hHhhccceeE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV-SLKEG--MFSNANVIFR 246 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiV-TH~~~--~~~~ad~l~~ 246 (264)
..+++|||||+|||...+..|++++++++..+|.|+. =|.+. +++.-|+++-
T Consensus 949 ~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL 1003 (1391)
T KOG0065|consen 949 SSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLL 1003 (1391)
T ss_pred ceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH
Confidence 4999999999999999999999999999986666654 46654 5789999877
No 413
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=1.4e-13 Score=147.58 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=75.2
Q ss_pred ccccCCCCHHHHH------HHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh------cCCeEEEEEeC
Q psy17516 167 KESLGELSGGQRS------LVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF------KTSQFIIVSLK 234 (264)
Q Consensus 167 ~~~~~~LSGGekq------rvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~------~~~q~IiVTH~ 234 (264)
...++.|||||+| |++||++| +.+|++++|||||++||+.+...+.+.|..+. .+.++|||||+
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~----~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd 1269 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETF----CLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHD 1269 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHH----hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecC
Confidence 3456799999999 89998876 46889999999999999999999998887752 25789999999
Q ss_pred cchHh------hccceeEEEe-eCCeEEEEEeec
Q psy17516 235 EGMFS------NANVIFRTKF-VDGNSNVTRTVN 261 (264)
Q Consensus 235 ~~~~~------~ad~l~~v~~-~~g~s~i~~~~~ 261 (264)
...+. .|+.+|.|+= ++|.|.|.+..|
T Consensus 1270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1303 (1311)
T TIGR00606 1270 EDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSP 1303 (1311)
T ss_pred HHHHHHHhhccccceeeeeeeccccCceeEeeCC
Confidence 88764 4678899864 469999988655
No 414
>KOG0066|consensus
Probab=99.55 E-value=5.8e-15 Score=139.24 Aligned_cols=93 Identities=20% Similarity=0.310 Sum_probs=71.8
Q ss_pred HcCCCcccc-cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcch
Q psy17516 159 NVAFGGLWK-ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM 237 (264)
Q Consensus 159 ~v~l~~~~~-~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~ 237 (264)
.+|+....+ -.+..||||||.|||+|-+ -+..|+++||||||++||..+...+.+.|.++. +.+||||||.++
T Consensus 690 ~fGL~sHAHTikikdLSGGQKaRValaeL----al~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRL 763 (807)
T KOG0066|consen 690 TFGLASHAHTIKIKDLSGGQKARVALAEL----ALGGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERL 763 (807)
T ss_pred hhhhhhccceEeeeecCCcchHHHHHHHH----hcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccce
Confidence 446654333 3578999999999999864 257889999999999999999999999998874 569999999998
Q ss_pred Hhhcc-ceeEEEeeCCeEEEEE
Q psy17516 238 FSNAN-VIFRTKFVDGNSNVTR 258 (264)
Q Consensus 238 ~~~ad-~l~~v~~~~g~s~i~~ 258 (264)
+-..| .+|-| -..|++.|.+
T Consensus 764 i~eT~C~LwVv-E~Q~i~eIdG 784 (807)
T KOG0066|consen 764 IVETDCNLWVV-ENQGIDEIDG 784 (807)
T ss_pred eeecCceEEEE-ccCChhhccc
Confidence 76555 34442 2347777754
No 415
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.55 E-value=5e-16 Score=134.68 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=116.5
Q ss_pred ccceeeeccceee------chhhHHHHhhhhhccch-----hHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISMEAMTKK-----SIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~-----~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
.+|+++++||+-+ ||||-..+.+.+..... +....+.- .+-++...+++++ |.++++.+
T Consensus 25 ~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~i----dLL~L~Pr~RRk~------ig~~isMI 94 (330)
T COG4170 25 RVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI----DLLRLSPRERRKL------VGHNVSMI 94 (330)
T ss_pred eeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccc----hhhcCChHHhhhh------hccchhhh
Confidence 4999999999987 99999988775543221 22222221 1334555554443 24566677
Q ss_pred HHh----hcCCCcCC---------CCCC--------chhhHHHhHHHHcCCCccc---ccccCCCCHHHHHHHHHHHHHH
Q psy17516 133 FSL----LLPGSQAK---------LSPP--------AGKDILDGLEVNVAFGGLW---KESLGELSGGQRSLVALSLVLA 188 (264)
Q Consensus 133 f~~----L~~g~~~~---------l~~~--------~~~~~~~~l~~~v~l~~~~---~~~~~~LSGGekqrvaiA~~la 188 (264)
||. |-|....+ +... =.+..+-+++-+||+.+.. ..+|.+|--||=|+|.||.|+
T Consensus 95 FQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~- 173 (330)
T COG4170 95 FQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIAL- 173 (330)
T ss_pred hcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhh-
Confidence 764 11111100 0000 0123456788899997644 578999999999999998765
Q ss_pred HhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccce
Q psy17516 189 MLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVI 244 (264)
Q Consensus 189 ~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l 244 (264)
++.|.++++||||+++|+.....|.++|..+++ +++++++|||..++ +-||++
T Consensus 174 ---AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i 229 (330)
T COG4170 174 ---ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI 229 (330)
T ss_pred ---ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhhe
Confidence 478899999999999999999999999998765 67788999999887 568876
No 416
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.54 E-value=2.1e-14 Score=120.07 Aligned_cols=78 Identities=36% Similarity=0.590 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccceeEEEe
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIFRTKF 249 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~v~~ 249 (264)
+|||||+||++||++++.+-+++|+++++|||++++|+.+...+.+.+.++.. +.++|++||+..+.+.+|+++.+..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 49999999999999987543458899999999999999999999999988654 5799999999999999999999654
No 417
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.51 E-value=4.1e-13 Score=139.47 Aligned_cols=92 Identities=33% Similarity=0.393 Sum_probs=81.6
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHh--hcCC--CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhc
Q psy17516 167 KESLGELSGGQRSLVALSLVLAML--LFKP--APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~--l~~~--~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~a 241 (264)
.+++..|||||+-.++||.++|.+ +... -+++++||||+.||+.+...+++.|..+.. +.|+|||||++.+-++|
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~ 889 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERA 889 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhC
Confidence 578999999999999998887765 4444 689999999999999999999999999876 68999999999999999
Q ss_pred cceeEEEeeCCeEEEEE
Q psy17516 242 NVIFRTKFVDGNSNVTR 258 (264)
Q Consensus 242 d~l~~v~~~~g~s~i~~ 258 (264)
|.++.|.-.+|.|+|..
T Consensus 890 ~~~i~V~k~~g~S~v~~ 906 (908)
T COG0419 890 DVRIRVKKDGGRSRVEV 906 (908)
T ss_pred CeEEEEEecCCcceeee
Confidence 99999987778888764
No 418
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=5.7e-13 Score=117.26 Aligned_cols=138 Identities=13% Similarity=0.093 Sum_probs=92.6
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
.+..++++++..+|+++. +|||||+++++.. . +. .+.|.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~------~---------------------~l-------a~~g~- 61 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI------V---------------------LM-------AQIGC- 61 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH------H---------------------HH-------HHhCC-
Confidence 467789999999999876 9999999988610 0 00 11120
Q ss_pred HHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC---CCCCCH
Q psy17516 133 FSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV---DAALDL 209 (264)
Q Consensus 133 f~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP---ta~LD~ 209 (264)
..|...+.+ .....++..+++.+.. ...+|+|++++..+++++.. +.+|+++|+||| |++||+
T Consensus 62 ---~vpa~~~~~------~~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~--~~~~sLvLLDEp~~gT~~lD~ 127 (222)
T cd03285 62 ---FVPCDSADI------PIVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKS--ATENSLIIIDELGRGTSTYDG 127 (222)
T ss_pred ---CcCcccEEE------eccceeEeeeccccch---hcCcChHHHHHHHHHHHHHh--CCCCeEEEEecCcCCCChHHH
Confidence 011111111 1122333345555432 57899999999999988632 478899999999 999999
Q ss_pred HHHHHHH-HHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 210 SHTQNIG-QMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 210 ~~~~~i~-~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
....... +.+.+ ..+.++|++||...+.+.||++..
T Consensus 128 ~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~ 164 (222)
T cd03285 128 FGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPN 164 (222)
T ss_pred HHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCC
Confidence 8875443 33432 235789999999888899998765
No 419
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.42 E-value=3.9e-13 Score=126.26 Aligned_cols=173 Identities=19% Similarity=0.240 Sum_probs=111.1
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhhhhcc-chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
+.|..+++||.+++|++++ +||||||+++++... .+++.+.-.+- .-++......++. .....-.|+
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg----~v~vp~nt~~a~i--Pge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSG----KVEVPKNTVSALI--PGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCC----ceeccccchhhcc--CcccccccC
Confidence 4688899999999999997 899999998754221 11111000000 0000000000000 000001111
Q ss_pred --hHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc--ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 131 --SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG--LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 131 --~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~--~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
++.+.+. +....-..+.+++.++|+.+ ...+.+++||-|||-|+-||.++| ..|.+++.||-.|.
T Consensus 469 ~~tilehl~-------s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla----erpn~~~iDEF~Ah 537 (593)
T COG2401 469 EVTILEHLR-------SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA----ERPNVLLIDEFAAH 537 (593)
T ss_pred chhHHHHHh-------hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh----cCCCcEEhhhhhhh
Confidence 1111111 00111124566777888865 445788999999999999998875 78899999999999
Q ss_pred CCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhh--ccceeEE
Q psy17516 207 LDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSN--ANVIFRT 247 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~--ad~l~~v 247 (264)
||+.+..+++.-|.+++. +.|.++||||+++... -|+++-+
T Consensus 538 LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~v 582 (593)
T COG2401 538 LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILV 582 (593)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEe
Confidence 999999999999999984 7899999999998754 4777554
No 420
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.40 E-value=5.1e-13 Score=133.52 Aligned_cols=91 Identities=24% Similarity=0.318 Sum_probs=77.9
Q ss_pred HHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEe
Q psy17516 156 LEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSL 233 (264)
Q Consensus 156 l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH 233 (264)
.+..|||.- ++-++...|||||.||+=||.-|+. .....-+|+|||||.||-......+++.|.++.. +.++|||-|
T Consensus 805 tL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k-~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEH 883 (935)
T COG0178 805 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSK-RSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883 (935)
T ss_pred HHHHcCcceEecCCccccccchHHHHHHHHHHHhh-ccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 345678864 5678999999999999999988764 2223479999999999999999999999999875 789999999
Q ss_pred CcchHhhccceeEE
Q psy17516 234 KEGMFSNANVIFRT 247 (264)
Q Consensus 234 ~~~~~~~ad~l~~v 247 (264)
|...++.||.++.+
T Consensus 884 NLdVIk~AD~IIDL 897 (935)
T COG0178 884 NLDVIKTADWIIDL 897 (935)
T ss_pred ccceEeecCEEEEc
Confidence 99999999999874
No 421
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=1.3e-12 Score=137.45 Aligned_cols=86 Identities=22% Similarity=0.140 Sum_probs=70.3
Q ss_pred CCCcccccccCCCCHHHHHHHHHHHHHHHh-hcC-----CCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEe
Q psy17516 161 AFGGLWKESLGELSGGQRSLVALSLVLAML-LFK-----PAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSL 233 (264)
Q Consensus 161 ~l~~~~~~~~~~LSGGekqrvaiA~~la~~-l~~-----~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH 233 (264)
++.+...+++..|||||++||+||++++.+ ++. +|+++|+||||++||+.....++++|..+.. +.+++||||
T Consensus 939 ~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH 1018 (1042)
T TIGR00618 939 DAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISH 1018 (1042)
T ss_pred eCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 334556788999999999999999998742 122 6899999999999999999999999998865 567789999
Q ss_pred CcchHhh-ccceeE
Q psy17516 234 KEGMFSN-ANVIFR 246 (264)
Q Consensus 234 ~~~~~~~-ad~l~~ 246 (264)
++.+... +|+++-
T Consensus 1019 ~~~~~~~~~~~i~v 1032 (1042)
T TIGR00618 1019 VPEFRERIPHRILV 1032 (1042)
T ss_pred cHHHHHhhCCEEEE
Confidence 9988765 566554
No 422
>KOG0060|consensus
Probab=99.37 E-value=7.3e-13 Score=128.36 Aligned_cols=184 Identities=15% Similarity=0.142 Sum_probs=114.7
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhhhhcc-chhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMT-KKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~-~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
...+-.+.||+|+.|.-+- ||||+|++.++++=+ -++.+..-.+ ... ...|- ..|.+--..|
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~-------~~~---~~lff-lPQrPYmt~G 515 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD-------GGP---KDLFF-LPQRPYMTLG 515 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc-------CCC---CceEE-ecCCCCcccc
Confidence 3577788999999999663 999999999987633 2222221100 000 00110 0011111124
Q ss_pred hHHHh-hcCCCcCCCCC-CchhhHHHhHHHHcCCCcc-----------cccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 131 SIFSL-LLPGSQAKLSP-PAGKDILDGLEVNVAFGGL-----------WKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 131 ~vf~~-L~~g~~~~l~~-~~~~~~~~~l~~~v~l~~~-----------~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
+.-+. +.|-....... ...++.+..+++.+++.+. -..-...||+||+||+|.||.| +..|++
T Consensus 516 TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf----y~kPk~ 591 (659)
T KOG0060|consen 516 TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF----YHKPKF 591 (659)
T ss_pred chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH----hcCCce
Confidence 44443 34422111100 1111222333334444322 1234568999999999999887 688899
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEee-CCeEEEEEee
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFV-DGNSNVTRTV 260 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~-~g~s~i~~~~ 260 (264)
-+|||-|+|+|......+.+.+++ .+.|+|-|+||+.+.+.=|.++. |. .|.-++..+.
T Consensus 592 AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~--~~g~g~w~~~~I~ 651 (659)
T KOG0060|consen 592 AILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLR--MDGRGSWRFHQID 651 (659)
T ss_pred EEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEE--ecCCCceEEEEec
Confidence 999999999999999999999887 37899999999999999897777 43 3555555543
No 423
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.37 E-value=4.1e-12 Score=133.70 Aligned_cols=97 Identities=24% Similarity=0.194 Sum_probs=77.6
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHh----hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhh
Q psy17516 166 WKESLGELSGGQRSLVALSLVLAML----LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSN 240 (264)
Q Consensus 166 ~~~~~~~LSGGekqrvaiA~~la~~----l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ 240 (264)
..+++..|||||+++++||++++++ .-.+|+++|+||||++||+.....+++.|..+.. +.+++||||...+.+.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 4578999999999999999988631 0126899999999999999999999999999864 6789999998777666
Q ss_pred ccceeEEEeeC--CeEEEEEeecc
Q psy17516 241 ANVIFRTKFVD--GNSNVTRTVNR 262 (264)
Q Consensus 241 ad~l~~v~~~~--g~s~i~~~~~~ 262 (264)
-..-+.|+-.. |.|+|.+.-.+
T Consensus 1023 i~~qi~V~k~~g~g~S~v~~~~~~ 1046 (1047)
T PRK10246 1023 IPVQIKVKKINGLGYSKLDSAFAV 1046 (1047)
T ss_pred ccceEEEEECCCCCcceeehhhcc
Confidence 66556665443 58988765433
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.33 E-value=2.3e-12 Score=111.31 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=57.6
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHH-HHHHhhc-CCeEEEEEeCcchHhhcccee
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQ-MLKRHFK-TSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~-ll~~~~~-~~q~IiVTH~~~~~~~ad~l~ 245 (264)
...+.+|++++|...++. .+.+|+++|+|||++++|+.....+.. +++.+.+ +.++|++||+.+....|+.+.
T Consensus 87 ~~~s~~~~e~~~l~~i~~-----~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~ 161 (202)
T cd03243 87 DGRSTFMAELLELKEILS-----LATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVP 161 (202)
T ss_pred CCceeHHHHHHHHHHHHH-----hccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCC
Confidence 445677888888666532 357899999999999999998887754 4555543 678999999999999999654
Q ss_pred E
Q psy17516 246 R 246 (264)
Q Consensus 246 ~ 246 (264)
.
T Consensus 162 ~ 162 (202)
T cd03243 162 G 162 (202)
T ss_pred C
Confidence 4
No 425
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.30 E-value=4.3e-12 Score=121.21 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=121.9
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh---
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF--- 129 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f--- 129 (264)
..++|||+|.+||+++ .|-+.|+..++++. .+|.+.+.+.+ + +..++..++... -...|+..-
T Consensus 273 ~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~-v---~~~~~~~~~r~~--G~~~VPedR~~~ 346 (501)
T COG3845 273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD-V---LGRLSPRERRRL--GLAYVPEDRHGH 346 (501)
T ss_pred eeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEe-c---cccCCHHHHHhc--CCccCChhhccC
Confidence 3567999999999998 68899999987764 45566666643 1 122332222211 111122211
Q ss_pred h-----hHHHhhcCCCcC--------CCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 G-----SIFSLLLPGSQA--------KLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ~-----~vf~~L~~g~~~--------~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| +++++++.+... .+...........+...++.. .-...+...||||.+|++-+||-++ ..|
T Consensus 347 Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~----~~p 422 (501)
T COG3845 347 GLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELA----RRP 422 (501)
T ss_pred ccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhc----cCC
Confidence 1 334443322111 111122234455666666654 3345668899999999999999875 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeC-cchHhhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLK-EGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~-~~~~~~ad~l~~v~~~~g~s 254 (264)
+++++..||-|||....+.|.+.|.+..+ ++.+++||-+ .++++.|||++- |-+|..
T Consensus 423 ~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaV--i~~Gri 481 (501)
T COG3845 423 DLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAV--IYEGRI 481 (501)
T ss_pred CEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeee--eeCCce
Confidence 99999999999999999999999888775 6788899988 456799999988 557643
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=1.2e-11 Score=107.50 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=88.4
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
+.+..++++|+++.|+++. +|||||+++++.+. +.+ +.|.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------~la----------------------------~~G~ 60 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------IMA----------------------------QIGC 60 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------HHH----------------------------HcCC
Confidence 3577889999999999886 99999999885442 000 1110
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
| .|...+.+. ..+.+...++..+...+..+.+|+|++|+..+ ++ ++.+|+++++|||++++|+..
T Consensus 61 -~---vpa~~~~l~------~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i---l~--~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 61 -F---VPAEYATLP------IFNRLLSRLSNDDSMERNLSTFASEMSETAYI---LD--YADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred -C---cchhhcCcc------ChhheeEecCCccccchhhhHHHHHHHHHHHH---HH--hcCCCcEEEeccccCCCCHHH
Confidence 0 011111110 11122223344444556778999999986443 22 457889999999999999977
Q ss_pred HHHHHH-HHHHhhc-CCeEEEEEeCcchHhhcc
Q psy17516 212 TQNIGQ-MLKRHFK-TSQFIIVSLKEGMFSNAN 242 (264)
Q Consensus 212 ~~~i~~-ll~~~~~-~~q~IiVTH~~~~~~~ad 242 (264)
...+.. +++.+.+ +.++|++||+.++++.++
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 655543 4555543 788999999999887654
No 427
>KOG0066|consensus
Probab=99.27 E-value=1e-11 Score=117.51 Aligned_cols=88 Identities=26% Similarity=0.363 Sum_probs=71.1
Q ss_pred HHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEE
Q psy17516 153 LDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231 (264)
Q Consensus 153 ~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiV 231 (264)
+..++.-+|+. +..+++....|||-|-||+||||+ +-.|-+++|||||++||...+.++-++|+-+. .|.+||
T Consensus 392 ARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARAL----flEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIV 465 (807)
T KOG0066|consen 392 ARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARAL----FLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIV 465 (807)
T ss_pred HHHHHhhcCCChhHhcCCccccCCceeeehhHHHHH----hcCceeeeecCCccccccceeeehhhHHhhhh--heeEEE
Confidence 33444445664 456788899999999999998875 56889999999999999999999888888754 478999
Q ss_pred EeCcchH-hhccceeE
Q psy17516 232 SLKEGMF-SNANVIFR 246 (264)
Q Consensus 232 TH~~~~~-~~ad~l~~ 246 (264)
|||..++ ..|.-|+.
T Consensus 466 SHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 466 SHDQGFLDSVCTDIIH 481 (807)
T ss_pred ecccchHHHHHHHHhh
Confidence 9999988 45777765
No 428
>KOG0063|consensus
Probab=99.27 E-value=1.8e-12 Score=122.14 Aligned_cols=89 Identities=26% Similarity=0.335 Sum_probs=70.5
Q ss_pred HhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHh--hcCCeEEEE
Q psy17516 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH--FKTSQFIIV 231 (264)
Q Consensus 154 ~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~--~~~~q~IiV 231 (264)
...+.-+.+.+..++.+..|||||.||||+|+++ =+|+++|+.|||.|-||.+.+......++++ +.+.+--+|
T Consensus 438 ~dvmkpL~ie~i~dqevq~lSggelQRval~KOG----GKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvV 513 (592)
T KOG0063|consen 438 NDVMKPLQIENIIDQEVQGLSGGELQRVALALCL----GKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVV 513 (592)
T ss_pred HhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhc----CCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhh
Confidence 3333344555667788999999999999998765 5899999999999999999988888888875 334555678
Q ss_pred EeCcchHhh-ccceeE
Q psy17516 232 SLKEGMFSN-ANVIFR 246 (264)
Q Consensus 232 TH~~~~~~~-ad~l~~ 246 (264)
-||--++.+ |||++-
T Consensus 514 EhdfImaTYladrviv 529 (592)
T KOG0063|consen 514 EHDFIMATYLADRVIV 529 (592)
T ss_pred hhHHHHHHhhcceeEE
Confidence 999877754 998865
No 429
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=3.5e-11 Score=108.58 Aligned_cols=80 Identities=26% Similarity=0.278 Sum_probs=61.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHH-----hhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeC-cchHhhc-
Q psy17516 169 SLGELSGGQRSLVALSLVLAM-----LLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK-EGMFSNA- 241 (264)
Q Consensus 169 ~~~~LSGGekqrvaiA~~la~-----~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~-~~~~~~a- 241 (264)
....+|+||+|+++||+++|. +....|+++++||||++||+..+..+.+.+.+.. |++++||+ ..+...|
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~ 256 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWL 256 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhc
Confidence 356789999999999998863 2457889999999999999999999999998753 55555554 4445556
Q ss_pred --cceeEEEeeCCe
Q psy17516 242 --NVIFRTKFVDGN 253 (264)
Q Consensus 242 --d~l~~v~~~~g~ 253 (264)
+++|. +++|.
T Consensus 257 ~~~~i~~--l~~g~ 268 (270)
T cd03242 257 RRAQIFR--VDAGT 268 (270)
T ss_pred cCccEEE--EeCcE
Confidence 56666 55775
No 430
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.17 E-value=8.7e-11 Score=117.80 Aligned_cols=90 Identities=28% Similarity=0.358 Sum_probs=77.0
Q ss_pred HHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEe
Q psy17516 156 LEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSL 233 (264)
Q Consensus 156 l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH 233 (264)
.+..|||.. -.++....|||||.||+.||.-+-..|.. =+|+||||+.||-+....++.+.|+++.. +.|+|||-|
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtG--VlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEH 541 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTG--VLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhccccee--eEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEec
Confidence 344677765 35788999999999999999877544433 49999999999999999999999999986 789999999
Q ss_pred CcchHhhccceeEE
Q psy17516 234 KEGMFSNANVIFRT 247 (264)
Q Consensus 234 ~~~~~~~ad~l~~v 247 (264)
|+.+|..||.++.+
T Consensus 542 Dedti~~AD~iIDi 555 (935)
T COG0178 542 DEDTIRAADHIIDI 555 (935)
T ss_pred CHHHHhhcCEEEee
Confidence 99999999999874
No 431
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.08 E-value=7.4e-10 Score=95.89 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=40.6
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHH-HHHHhhc-CCeEEEEEeCcchHhhc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQ-MLKRHFK-TSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~-ll~~~~~-~~q~IiVTH~~~~~~~a 241 (264)
.+|+++|+|||++++|+.....+.. +++.+.+ +.++|++||+...+...
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 3889999999999999999887654 6776654 67899999998887665
No 432
>KOG0064|consensus
Probab=99.07 E-value=9.1e-11 Score=113.09 Aligned_cols=72 Identities=15% Similarity=0.291 Sum_probs=63.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEE
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRT 247 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v 247 (264)
-..||||||||+++||.| ++.|++-+|||-|+|.-..-...+.+..+.. +.++|-||||+.+.++-..++..
T Consensus 610 kd~LsgGekQR~~mARm~----yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 610 KDVLSGGEKQRMGMARMF----YHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HhhccchHHHHHHHHHHH----hcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 358999999999999986 7999999999999999998888888777653 67899999999999998888774
No 433
>PRK00064 recF recombination protein F; Reviewed
Probab=99.04 E-value=6e-10 Score=104.79 Aligned_cols=83 Identities=27% Similarity=0.270 Sum_probs=65.6
Q ss_pred cccCCCCHHHHHHHHHHHHHHHh-----hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHh-h-
Q psy17516 168 ESLGELSGGQRSLVALSLVLAML-----LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFS-N- 240 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~-----l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~-~- 240 (264)
.....+|+||+++++||+.+|.+ ...+||++|+|||+++||+.++..+.+++.++ +.|++|+||+...+. .
T Consensus 269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLL 346 (361)
T ss_pred CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhh
Confidence 34579999999999999988742 35789999999999999999999999988764 458899999865442 2
Q ss_pred -ccceeEEEeeCCeE
Q psy17516 241 -ANVIFRTKFVDGNS 254 (264)
Q Consensus 241 -ad~l~~v~~~~g~s 254 (264)
+++++. +++|..
T Consensus 347 ~~~~i~~--v~~G~i 359 (361)
T PRK00064 347 ENAKIFH--VEQGKI 359 (361)
T ss_pred ccCcEEE--EeCCEE
Confidence 345666 567764
No 434
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.04 E-value=2.7e-10 Score=99.86 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=49.7
Q ss_pred CCCCHHHHHH----HHHHHHHHHhhcCCCCEEEeecC---CCCCCHHHH-HHHHHHHHHhhcCCeEEEEEeCcchHhhcc
Q psy17516 171 GELSGGQRSL----VALSLVLAMLLFKPAPLYILDEV---DAALDLSHT-QNIGQMLKRHFKTSQFIIVSLKEGMFSNAN 242 (264)
Q Consensus 171 ~~LSGGekqr----vaiA~~la~~l~~~~~illlDEP---ta~LD~~~~-~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad 242 (264)
.++|+|+.+. ..++.+++ .+.+|+++|+||| |+++|.... ..+.+.+.+. .+.++|++||+..+.+.+|
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~--~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~ 160 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILN--NATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEG 160 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHH--hCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhh
Confidence 3455555554 34666654 3578899999999 999998652 4444444432 2678899999998888888
Q ss_pred ce
Q psy17516 243 VI 244 (264)
Q Consensus 243 ~l 244 (264)
++
T Consensus 161 ~~ 162 (216)
T cd03284 161 KL 162 (216)
T ss_pred cC
Confidence 75
No 435
>KOG2355|consensus
Probab=99.02 E-value=2.6e-10 Score=99.02 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=68.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeC-cchHhhcccee
Q psy17516 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLK-EGMFSNANVIF 245 (264)
Q Consensus 169 ~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~-~~~~~~ad~l~ 245 (264)
+++.+|-|||+||.||.. +++|-++++|||+|-.||...+..+++++++-++ ++++|..||= .++..-+..++
T Consensus 144 RmHkvSDGqrRRVQicMG----LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~ 219 (291)
T KOG2355|consen 144 RMHKVSDGQRRRVQICMG----LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLV 219 (291)
T ss_pred EEeeccccchhhhHHHHh----cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEE
Confidence 467899999999999654 6899999999999999999999999999998764 7889999995 55667788887
Q ss_pred EEEeeCCeE
Q psy17516 246 RTKFVDGNS 254 (264)
Q Consensus 246 ~v~~~~g~s 254 (264)
- +.+|..
T Consensus 220 y--i~~Gkl 226 (291)
T KOG2355|consen 220 Y--IKSGKL 226 (291)
T ss_pred E--ecCCee
Confidence 7 556654
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.99 E-value=2.2e-09 Score=91.43 Aligned_cols=72 Identities=25% Similarity=0.291 Sum_probs=55.9
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCC-CEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPA-PLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF 238 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~~~~-~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~ 238 (264)
...-++..+|.|+++.++|+..+.. ..+. .++++|||+++|.|..+..++++|++.++ +.|+|++||.+.++
T Consensus 229 ~~~~~~~~~S~G~~~~l~l~~~l~~--~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 229 GKEIPLSSLSSGEKRLLSLLSLLLS--AKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp EEEGGGS---HHHHHHHHHHHHHHT--TTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred CeEEeeccCCHHHHHHHHHHHHHhC--cCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 3455778999999999887766542 2333 89999999999999999999999998876 89999999998765
No 437
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.97 E-value=1.9e-08 Score=101.42 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=55.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcC--CCCEEEeecCCCCCCHHHHHHHHH-HHHHhhcCCeEEEEEeCcchH
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFK--PAPLYILDEVDAALDLSHTQNIGQ-MLKRHFKTSQFIIVSLKEGMF 238 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~--~~~illlDEPta~LD~~~~~~i~~-ll~~~~~~~q~IiVTH~~~~~ 238 (264)
.++..|||||+|.++||+++|++.+. +.|++ +|||++.||+.++..+.+ ++... ..|+||+||+.++-
T Consensus 547 ~~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~i-iD~p~~~lD~~~r~~l~~~~~~~~--~~QvIils~d~e~~ 617 (650)
T TIGR03185 547 IDKERLSAGERQILAIALLWGLAKVSGRRLPVI-IDTPLGRLDSSHRENLVVNYFPKA--SHQVLLLSTDEEVD 617 (650)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEE-EcCCccccChHHHHHHHHHHhhcc--CCeEEEEechHhhC
Confidence 46789999999999999988865433 47885 599999999999999875 66654 47999999997764
No 438
>KOG0063|consensus
Probab=98.90 E-value=2.8e-09 Score=100.87 Aligned_cols=91 Identities=16% Similarity=0.333 Sum_probs=75.5
Q ss_pred HHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEE
Q psy17516 153 LDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIV 231 (264)
Q Consensus 153 ~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiV 231 (264)
...+...+.|....++...+|||||-||.|||.+. ++.++++++|||.+.||...+.+-...|+.+.. +.-+|||
T Consensus 194 ~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~----vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVV 269 (592)
T KOG0063|consen 194 KEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVC----VQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVV 269 (592)
T ss_pred HHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhh----hhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEE
Confidence 34445566778888899999999999999998664 588899999999999999999999999998765 6778899
Q ss_pred EeCcchHhh-cc---ceeEE
Q psy17516 232 SLKEGMFSN-AN---VIFRT 247 (264)
Q Consensus 232 TH~~~~~~~-ad---~l~~v 247 (264)
-||..+..+ .| -+||+
T Consensus 270 EHDLsVLDylSDFiCcLYGv 289 (592)
T KOG0063|consen 270 EHDLSVLDYLSDFICCLYGV 289 (592)
T ss_pred EeechHHHhhhcceeEEecC
Confidence 999988765 44 34553
No 439
>KOG0065|consensus
Probab=98.89 E-value=4.1e-10 Score=117.91 Aligned_cols=179 Identities=19% Similarity=0.219 Sum_probs=112.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh-----ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHH-HHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA-----MTKKSIVESDRAKLLKVIEELDEKKKIALREAW-LKVNT 127 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-----~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~-~~v~~ 127 (264)
.+++++++-+++|+++- |||||||+.+.+- ..++++-++|.+ ..+.-.++.. +| .+-.-
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~-----~~e~~~~~~~----aY~~e~Dv 199 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHD-----LKEFVPKKTV----AYNSEQDV 199 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCc-----ccccccCceE----Eecccccc
Confidence 57889999999999885 9999999988542 223344444432 1111110000 11 00011
Q ss_pred hhh--hHHHhhcCCCcCCC-----CCCchhh----HHHhHHHHcCCCccc-----ccccCCCCHHHHHHHHHHHHHHHhh
Q psy17516 128 DFG--SIFSLLLPGSQAKL-----SPPAGKD----ILDGLEVNVAFGGLW-----KESLGELSGGQRSLVALSLVLAMLL 191 (264)
Q Consensus 128 ~f~--~vf~~L~~g~~~~l-----~~~~~~~----~~~~l~~~v~l~~~~-----~~~~~~LSGGekqrvaiA~~la~~l 191 (264)
+|+ +|++.+-.....+. ......+ ..+.++..+|+..-. +....-.|||||.||++|=+ +
T Consensus 200 H~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~----~ 275 (1391)
T KOG0065|consen 200 HFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEM----L 275 (1391)
T ss_pred ccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeee----e
Confidence 122 44444321111111 1111111 346778888987644 45667899999999999765 4
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeC--cchHhhccceeEEEeeCCe
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLK--EGMFSNANVIFRTKFVDGN 253 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~--~~~~~~ad~l~~v~~~~g~ 253 (264)
+.|+.+++.||+|.|||..++-++.+.|+++++ +++.+|.=|. +++++.-|.+.- |-+|.
T Consensus 276 v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~l--L~eG~ 339 (1391)
T KOG0065|consen 276 VGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVIL--LSEGY 339 (1391)
T ss_pred ecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheee--eeccc
Confidence 689999999999999999999999999999876 5555555454 556777777665 44654
No 440
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.89 E-value=4e-09 Score=107.89 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=56.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHH-HHHHHhhc-CCeEEEEEeCcchHhhc
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIG-QMLKRHFK-TSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~-~ll~~~~~-~~q~IiVTH~~~~~~~a 241 (264)
..++.+|+|+++++.|++. +.+|+++|+|||++|+|+.....+. .++..+.+ +..+|++||...+..++
T Consensus 381 ~~LStfS~~m~~~~~il~~-----~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~ 451 (771)
T TIGR01069 381 QNLSTFSGHMKNISAILSK-----TTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALM 451 (771)
T ss_pred hhhhHHHHHHHHHHHHHHh-----cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 4578999999999888643 3688999999999999999999884 56776654 67889999998875554
No 441
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=6e-09 Score=89.27 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=64.9
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhcc-
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNAN- 242 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad- 242 (264)
...+.....|.||-=.--+.+.| +..-+|+||||.|+|-+..+-.++..|+.+.+ ++|+||+||.+-+|.+-.
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf-----~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A 196 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRF-----NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGA 196 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHh-----ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCc
Confidence 34567889999997766665554 55689999999999999999999999999886 799999999999987733
Q ss_pred ceeEEE
Q psy17516 243 VIFRTK 248 (264)
Q Consensus 243 ~l~~v~ 248 (264)
+||.++
T Consensus 197 ~I~~~~ 202 (233)
T COG3910 197 EIYEIS 202 (233)
T ss_pred EEEEEe
Confidence 567743
No 442
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.87 E-value=4.9e-09 Score=89.48 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=61.3
Q ss_pred HcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHH-HHHHHhhc--CCeEEEEEeCc
Q psy17516 159 NVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIG-QMLKRHFK--TSQFIIVSLKE 235 (264)
Q Consensus 159 ~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~-~ll~~~~~--~~q~IiVTH~~ 235 (264)
.++..+...+..+.+|+|++|+..+.. .+.+|+++|+|||++++|+.....+. .+++.+.+ +.++|++||+.
T Consensus 48 ~~~~~d~~~~~~s~fs~~~~~l~~~l~-----~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 48 RIGASDSLAQGLSTFMVEMKETANILK-----NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred EeCCCCchhccccHHHHHHHHHHHHHH-----hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 345555666778899999988555432 24688999999999999999877765 45666543 57889999999
Q ss_pred chHhhccce
Q psy17516 236 GMFSNANVI 244 (264)
Q Consensus 236 ~~~~~ad~l 244 (264)
.+...||..
T Consensus 123 ~l~~~~~~~ 131 (185)
T smart00534 123 ELTKLADEH 131 (185)
T ss_pred HHHHHhhcC
Confidence 988888753
No 443
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=5.5e-09 Score=98.49 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-----hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH
Q psy17516 171 GELSGGQRSLVALSLVLAML-----LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF 238 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~-----l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~ 238 (264)
..+|.||+++++||+.+|.+ ....||++|+|||+++||+..+..++++|.+. +.|++|+||+...+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~ 344 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHL 344 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhc
Confidence 58999999999999998753 22478999999999999999999999999764 56999999987643
No 444
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.82 E-value=7.9e-09 Score=111.47 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=54.8
Q ss_pred ccccCCCCHHHHHHHHH----HHHHH----HhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeC
Q psy17516 167 KESLGELSGGQRSLVAL----SLVLA----MLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK 234 (264)
Q Consensus 167 ~~~~~~LSGGekqrvai----A~~la----~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~ 234 (264)
++.++.|||||||+++. |++.| .++..+|++++||||+++||+.+...++++|.++ +.++||+||+
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~ 1315 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSER 1315 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccc
Confidence 44579999999999974 44433 2245789999999999999999999999999987 6788999986
No 445
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.78 E-value=1.3e-08 Score=77.37 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=42.9
Q ss_pred cccccCCCCHHHH-HHHHHHHHHHHh--hcC------CCCEEEeecCCCCCCHHHHHHHHHHHHH
Q psy17516 166 WKESLGELSGGQR-SLVALSLVLAML--LFK------PAPLYILDEVDAALDLSHTQNIGQMLKR 221 (264)
Q Consensus 166 ~~~~~~~LSGGek-qrvaiA~~la~~--l~~------~~~illlDEPta~LD~~~~~~i~~ll~~ 221 (264)
..+..+.+||||+ ..+++|++.|.+ +-. .+.+++||||++.||+.+...++++|++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4678899999999 555565554433 222 3689999999999999999999999874
No 446
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.77 E-value=4.1e-08 Score=96.13 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEE
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTK 248 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~ 248 (264)
.-.||||-+|+.||.-.+.+-..+.|.++|||+|+|+--.....|.+.|+++++.+|+++|||-|.++.+||.=|.|.
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~ 507 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMADTHFLVE 507 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhcceEEEE
Confidence 578999999999998776554555789999999999999999999999999999999999999999999999988875
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.51 E-value=4.4e-07 Score=80.30 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC----CHHHHHHHHHHHHHhhcCCeEEEEEeCcch
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL----DLSHTQNIGQMLKRHFKTSQFIIVSLKEGM 237 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L----D~~~~~~i~~ll~~~~~~~q~IiVTH~~~~ 237 (264)
.+|+++.++..+++++...-..+|+++++||||+++ |+.....+.++++.+++.+.++++||+...
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~ 164 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKE 164 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 356666666666666544334578999999999999 888888899999888664447777887654
No 448
>PRK14079 recF recombination protein F; Provisional
Probab=98.50 E-value=3.5e-07 Score=85.75 Aligned_cols=76 Identities=26% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh-----hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhcccee
Q psy17516 171 GELSGGQRSLVALSLVLAML-----LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~-----l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~ 245 (264)
.-+|+||++++++|+.+|.+ ....||++|+|||++.||...+..+.++|.... |++|.|- ..-.-||+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t--~~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGT--EAPPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcC--CCCCCCceEE
Confidence 57899999999999987622 126789999999999999999999998886532 4443332 2346788888
Q ss_pred EEEeeCCe
Q psy17516 246 RTKFVDGN 253 (264)
Q Consensus 246 ~v~~~~g~ 253 (264)
.+ ++|+
T Consensus 337 ~~--~~~~ 342 (349)
T PRK14079 337 RI--EAGV 342 (349)
T ss_pred EE--eccE
Confidence 85 4554
No 449
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.47 E-value=2.3e-07 Score=81.76 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=37.0
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHH-HHHHHHhhc--CCeEEEEEeCcchHhhcc
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNI-GQMLKRHFK--TSQFIIVSLKEGMFSNAN 242 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i-~~ll~~~~~--~~q~IiVTH~~~~~~~ad 242 (264)
+.+++++|+|||.++.|+.....+ ..+++.+.+ +.++|++||+..+.+.++
T Consensus 108 ~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~ 161 (222)
T cd03287 108 CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILR 161 (222)
T ss_pred CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHH
Confidence 568899999999777775555443 345555443 678999999999877664
No 450
>PF13175 AAA_15: AAA ATPase domain
Probab=98.45 E-value=3.3e-07 Score=86.01 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=60.3
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCC------EEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAP------LYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM 237 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~------illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~ 237 (264)
.-++.++|.|.++++.++..++........ ++++|||.++|.|..+..+.+.|.++++ +.|+|+.||.+.+
T Consensus 336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 457899999999999998887543332222 9999999999999999999999999887 8999999999864
No 451
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.35 E-value=2e-06 Score=72.27 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=61.2
Q ss_pred cccccccCCCCHHHHH-----HHHHHHHHHHhhcCCCCEEEeecCCCCCC---HHHHHHHHHHHHHhhc-CCeEEEEEeC
Q psy17516 164 GLWKESLGELSGGQRS-----LVALSLVLAMLLFKPAPLYILDEVDAALD---LSHTQNIGQMLKRHFK-TSQFIIVSLK 234 (264)
Q Consensus 164 ~~~~~~~~~LSGGekq-----rvaiA~~la~~l~~~~~illlDEPta~LD---~~~~~~i~~ll~~~~~-~~q~IiVTH~ 234 (264)
...+.++..+|+|++| +..+..+. ...+|+++++|||++.+| ......+.++++.+.+ +.++|+++|.
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~---~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAI---EEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHH---HHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3456778899999988 33333322 345789999999999999 7777888888877654 6788899997
Q ss_pred cch----------HhhccceeEEEe
Q psy17516 235 EGM----------FSNANVIFRTKF 249 (264)
Q Consensus 235 ~~~----------~~~ad~l~~v~~ 249 (264)
... ...||.++.+..
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEEE
Confidence 653 456898877543
No 452
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.35 E-value=6.3e-07 Score=92.09 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=57.9
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHH-HHHHhhc-CCeEEEEEeCcchHhhcc
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQ-MLKRHFK-TSQFIIVSLKEGMFSNAN 242 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~-ll~~~~~-~~q~IiVTH~~~~~~~ad 242 (264)
.+.++.+|+|+++++.|++++ .+|+++|+|||++|+|+.....+.. ++..+.+ +.++|++||+..+...+.
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~-----~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~ 457 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKA-----DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMY 457 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhC-----CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHh
Confidence 356788999999999997653 6789999999999999999888865 5665554 678999999988876654
No 453
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.34 E-value=4.2e-07 Score=81.52 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=54.0
Q ss_pred CCCCHHH--------HHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHH-HHHHHHHhh-cCCeEEEEEeCcchHhh
Q psy17516 171 GELSGGQ--------RSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQN-IGQMLKRHF-KTSQFIIVSLKEGMFSN 240 (264)
Q Consensus 171 ~~LSGGe--------kqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~-i~~ll~~~~-~~~q~IiVTH~~~~~~~ 240 (264)
..+|||+ +||+++||+ ..+++++.++ ||+.+|..+... +. +.++. ...+.|++||+......
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~----~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~ 199 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARN----IEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRI 199 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcC----CCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCC
Confidence 3469999 999999876 3468899999 999999543332 33 34443 35678999999999999
Q ss_pred ccceeEEEeeCCe
Q psy17516 241 ANVIFRTKFVDGN 253 (264)
Q Consensus 241 ad~l~~v~~~~g~ 253 (264)
+|.|.= |..|.
T Consensus 200 ~paI~v--l~s~s 210 (249)
T cd01128 200 FPAIDI--LKSGT 210 (249)
T ss_pred CCeEEE--cCCCC
Confidence 998765 44554
No 454
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.33 E-value=2.7e-06 Score=74.82 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=41.2
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHHHHH-HHHhhc--CCeEEEEEeCcchHhhc
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNIGQM-LKRHFK--TSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i~~l-l~~~~~--~~q~IiVTH~~~~~~~a 241 (264)
+.+|.++|+|||.+|+|+.....+... ++.+.+ +..+|++||+.++....
T Consensus 107 ~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 107 ATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 468899999999999999998888876 555554 67899999998876554
No 455
>KOG0979|consensus
Probab=98.29 E-value=1.3e-05 Score=82.17 Aligned_cols=181 Identities=23% Similarity=0.316 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhHHHH
Q psy17516 5 EVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRTLLF 84 (264)
Q Consensus 5 ~~~~~~~~l~~~~~~l~~~vn~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKSTLl~ 84 (264)
++...+.+=..+...+. .||..++.+|+..+....
T Consensus 839 eld~~I~~e~t~~~~~~-n~ne~~vq~y~~r~~el~-------------------------------------------- 873 (1072)
T KOG0979|consen 839 ELDQAITDELTRALKFE-NVNEDAVQQYEVREDELR-------------------------------------------- 873 (1072)
T ss_pred HHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHH--------------------------------------------
Confidence 34444444344444555 788888888888777655
Q ss_pred hhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcCCCcCCCCCCchhhHH-HhHHHHcCCC
Q psy17516 85 ISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDIL-DGLEVNVAFG 163 (264)
Q Consensus 85 ~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~g~~~~l~~~~~~~~~-~~l~~~v~l~ 163 (264)
.+.+.-+....+-+.|.+-+..+...=...+..-.+.|+..|...|+.+-..|.+.+.. ++.++. .++.+.|.+.
T Consensus 874 ---~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~mg~aGeV~L~~-~~~DydkwgI~ImVkFR 949 (1072)
T KOG0979|consen 874 ---ELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSSMGCAGEVSLEV-NPLDYDKWGIMIMVKFR 949 (1072)
T ss_pred ---HHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEecc-CcccHhHhceEEEEEEc
Confidence 23222233333333333334443333334455566888888888888765545554432 334443 4677777663
Q ss_pred c---ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh-c--CCeEEEEEeC
Q psy17516 164 G---LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF-K--TSQFIIVSLK 234 (264)
Q Consensus 164 ~---~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~-~--~~q~IiVTH~ 234 (264)
+ ...-..+.=|||||+--.|--++|.+-+.|+||=+.||+--|.||.|...|.+.+-..+ + ..|+.+||-.
T Consensus 950 ~s~~L~~L~sh~QSGGERSVSTiLYLlALQ~l~~~PFRvVDEINQGMDp~NER~Vh~~mV~~ac~entsQyFliTPK 1026 (1072)
T KOG0979|consen 950 DSEGLKVLDSHRQSGGERSVSTILYLLALQELTPAPFRVVDEINQGMDPRNERKVHDIMVNMACKENTSQYFLITPK 1026 (1072)
T ss_pred cCcccccccccccCCcchHHHHHHHHHHHhhccCCCeeehhhhhcCCCchhHHHHHHHHHHHhhcCCCcceEEecch
Confidence 2 33335567899999999999999999999999999999999999999999999887765 3 5789999954
No 456
>PF13514 AAA_27: AAA domain
Probab=98.24 E-value=2.2e-05 Score=83.74 Aligned_cols=118 Identities=25% Similarity=0.303 Sum_probs=85.3
Q ss_pred hhhhhhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhc---CCCCE-EEee
Q psy17516 126 NTDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLF---KPAPL-YILD 201 (264)
Q Consensus 126 ~~~f~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~---~~~~i-lllD 201 (264)
....+.+|..|..|....+......+. .++..+...+ ...++..||+|-+-=+.||+=||.+-. ...|+ +|+|
T Consensus 982 l~~As~~f~~LT~G~Y~~l~~d~d~~~--~~l~~~~~~G-~~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlD 1058 (1111)
T PF13514_consen 982 LARASEYFSRLTGGRYSRLRVDEDGDK--PVLVVVRADG-ERVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILD 1058 (1111)
T ss_pred HHHHHHHHHHHhCCCCceeeeccccCc--ccceEEecCC-eEeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEee
Confidence 445567888888776654433221110 0111112223 346789999999998888877765522 24455 7789
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 202 EVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
+|+.+.|+.....++++|.++++.+|+|+-||++.+++.|..+++
T Consensus 1059 D~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~~a~~~~~ 1103 (1111)
T PF13514_consen 1059 DIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVELAREVFG 1103 (1111)
T ss_pred CCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999988866
No 457
>PF13166 AAA_13: AAA domain
Probab=98.18 E-value=7.3e-05 Score=75.93 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=61.9
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhh-----cCCCCEEEeecCCCCCCHHHHHHHHHHHHHh---hcCCeEEEEEeCcchHh
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLL-----FKPAPLYILDEVDAALDLSHTQNIGQMLKRH---FKTSQFIIVSLKEGMFS 239 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l-----~~~~~illlDEPta~LD~~~~~~i~~ll~~~---~~~~q~IiVTH~~~~~~ 239 (264)
.....||-|||.-+|+|-=||... +....++++|-|-+.||..++..|+.+|++. ....|+||-|||..++.
T Consensus 496 ~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~ 575 (712)
T PF13166_consen 496 KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFK 575 (712)
T ss_pred cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHH
Confidence 456899999999999998887644 1145799999999999999999999999998 56799999999988764
No 458
>KOG0250|consensus
Probab=98.16 E-value=2.7e-05 Score=80.71 Aligned_cols=67 Identities=28% Similarity=0.420 Sum_probs=60.8
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEe
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSL 233 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH 233 (264)
.+....||||||+-+.+|++++.--+...||..|||=+--.|..|+...+++|-+.+. ..|||++|=
T Consensus 984 v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTP 1052 (1074)
T KOG0250|consen 984 VRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITP 1052 (1074)
T ss_pred cccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEcc
Confidence 5678899999999999999999888889999999999999999999999999887763 589998884
No 459
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.14 E-value=5.5e-06 Score=72.47 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHH-HHHHHHhhcC----CeEEEEEeCcchHhhcc
Q psy17516 176 GQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI-GQMLKRHFKT----SQFIIVSLKEGMFSNAN 242 (264)
Q Consensus 176 GekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i-~~ll~~~~~~----~q~IiVTH~~~~~~~ad 242 (264)
-|-||+++++.+ +.+|+++|+|||++++|+.....+ ..+++.+.+. ..+|++||+.+..+.+.
T Consensus 94 ~el~~l~~~l~~----~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 94 IDLYQVSKALRL----ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHh----CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 566788887654 578899999999999999765555 4577776532 36889999998877653
No 460
>PRK13695 putative NTPase; Provisional
Probab=98.05 E-value=1.1e-05 Score=67.72 Aligned_cols=83 Identities=12% Similarity=0.046 Sum_probs=58.7
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC--CCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccce
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV--DAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVI 244 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP--ta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l 244 (264)
.+....|||+++-+..+++. ....|+++++||| +.++|+.....+.+++ ..+..+|+|+|+......+|++
T Consensus 73 ~~~~~~lsgle~~~~~l~~~----~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i 145 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALER----ALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEI 145 (174)
T ss_pred eeEEEehHHHHHHHHHHHHh----ccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHH
Confidence 34556799999999988654 3468899999995 4455554444443333 2367899999997777889998
Q ss_pred eEEEeeCCeEEEEE
Q psy17516 245 FRTKFVDGNSNVTR 258 (264)
Q Consensus 245 ~~v~~~~g~s~i~~ 258 (264)
.. +.+|....+.
T Consensus 146 ~~--~~~~~i~~~~ 157 (174)
T PRK13695 146 KS--RPGGRVYELT 157 (174)
T ss_pred hc--cCCcEEEEEc
Confidence 87 6687665443
No 461
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.02 E-value=8.8e-06 Score=73.84 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhh
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSN 240 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ 240 (264)
.+|+++++|||+. .+.+..+++.+..+.++|++||+......
T Consensus 193 ~~P~villDE~~~------~e~~~~l~~~~~~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 193 MSPDVIVVDEIGR------EEDVEALLEALHAGVSIIATAHGRDVEDL 234 (270)
T ss_pred CCCCEEEEeCCCc------HHHHHHHHHHHhCCCEEEEEechhHHHHH
Confidence 5889999999974 33455555655568899999998776444
No 462
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.98 E-value=1.8e-05 Score=72.86 Aligned_cols=68 Identities=28% Similarity=0.459 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhh
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSN 240 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ 240 (264)
.+||-|+-+..++|-+| .--+||+++++|||..+|-|.--..+..++...++.+|+||+||-+.++..
T Consensus 269 ~eLSDGTlRfl~l~t~L--lsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~ 336 (373)
T COG4637 269 RELSDGTLRFLALATLL--LSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNA 336 (373)
T ss_pred hhccccHHHHHHHHHHH--cCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhh
Confidence 39999999999998665 245679999999999999999999999999999998899999999888754
No 463
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.93 E-value=1.2e-05 Score=69.65 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=44.0
Q ss_pred ccCCCCHH--HHHHHHHHHHHHHhhcCCCCEEEeecCC-----CCCCHHHHHHHHHHHHHhhc
Q psy17516 169 SLGELSGG--QRSLVALSLVLAMLLFKPAPLYILDEVD-----AALDLSHTQNIGQMLKRHFK 224 (264)
Q Consensus 169 ~~~~LSGG--ekqrvaiA~~la~~l~~~~~illlDEPt-----a~LD~~~~~~i~~ll~~~~~ 224 (264)
..+..||+ |++++.||+++ +.+|+++++|||| ++||+..+..+.++++++++
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l----~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRL----TNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHH----hhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 44555555 99999998875 4789999999999 99999999999999998753
No 464
>KOG0962|consensus
Probab=97.93 E-value=1.9e-05 Score=83.36 Aligned_cols=91 Identities=23% Similarity=0.306 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHH--HHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHh------hcCCeEEEEEeCcchH----
Q psy17516 171 GELSGGQRSLVALSLV--LAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH------FKTSQFIIVSLKEGMF---- 238 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~--la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~------~~~~q~IiVTH~~~~~---- 238 (264)
+-=|.|||=.++|-.- +|=.++.+..+|-|||||.+||..|...++..+..+ ..+.|.||||||....
T Consensus 1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~ 1261 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLG 1261 (1294)
T ss_pred cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhh
Confidence 4568899976654322 223355788999999999999999988887765442 2378999999998765
Q ss_pred --hhccceeEEEe-eCCeEEEEEeec
Q psy17516 239 --SNANVIFRTKF-VDGNSNVTRTVN 261 (264)
Q Consensus 239 --~~ad~l~~v~~-~~g~s~i~~~~~ 261 (264)
.+++++|.+.- ++|.|.|+++.+
T Consensus 1262 ~~~~~e~~yr~~kd~~~~s~i~~~~~ 1287 (1294)
T KOG0962|consen 1262 RSAYPEYFYRVKKDESQISMIVKHSI 1287 (1294)
T ss_pred hcccchheeeecccchhcceeeeecC
Confidence 35788999754 459999998764
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.50 E-value=1e-05 Score=79.03 Aligned_cols=78 Identities=9% Similarity=0.017 Sum_probs=53.2
Q ss_pred HcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch
Q psy17516 159 NVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM 237 (264)
Q Consensus 159 ~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~ 237 (264)
.+++.+..++.+..+|+|++|||+|+.+.+. ...|+.. ...+..+.++++.+.+ +.++|++||+...
T Consensus 102 ~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL--~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 102 GFDLSALIERINYAIRKYKAKRVSIDSVTAV--FQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred cCCHHHHHHHHHHHHHHhCCcEEEEeehhHh--hhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 3455566677889999999999999965432 2222211 4667788888887764 7889999998643
Q ss_pred ----------HhhccceeEEE
Q psy17516 238 ----------FSNANVIFRTK 248 (264)
Q Consensus 238 ----------~~~ad~l~~v~ 248 (264)
--.||.++...
T Consensus 170 ~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 170 YGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ccccccCCceeEeeeeEEEEE
Confidence 12477776643
No 466
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.07 E-value=0.0022 Score=61.87 Aligned_cols=87 Identities=13% Similarity=0.034 Sum_probs=59.1
Q ss_pred cccCCCCHHHHHHHHHHHHHHHh----hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcchHhhcc
Q psy17516 168 ESLGELSGGQRSLVALSLVLAML----LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGMFSNAN 242 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~----l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~~~ad 242 (264)
.....-|.|+|.|++.+.+ ++| -...+-++++|+||...|+. .+|...+.+.. .+.++.+.||-..+.+.|.
T Consensus 217 ~~tsd~s~~~r~ra~~~a~-~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 217 VATSDESHLMQLRAAKLAT-SIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSG 293 (432)
T ss_pred EECCCCCHHHHHHHHHHHH-HHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhc
Confidence 4567889999999998644 221 12567899999999999996 45555555554 3456667788777777766
Q ss_pred ceeEEEeeCCeEEEEEeecc
Q psy17516 243 VIFRTKFVDGNSNVTRTVNR 262 (264)
Q Consensus 243 ~l~~v~~~~g~s~i~~~~~~ 262 (264)
.. ..|..+...++.+
T Consensus 294 ~~-----~~GSiT~~~tvlv 308 (432)
T PRK06793 294 KT-----QKGSITGIYTVLV 308 (432)
T ss_pred cC-----CCcceEEEEEEEe
Confidence 53 3566666555543
No 467
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.043 Score=54.14 Aligned_cols=70 Identities=20% Similarity=0.342 Sum_probs=57.1
Q ss_pred cccCC-CCHHHHHHHHHHHHHHHhhcCC----CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch
Q psy17516 168 ESLGE-LSGGQRSLVALSLVLAMLLFKP----APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM 237 (264)
Q Consensus 168 ~~~~~-LSGGekqrvaiA~~la~~l~~~----~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~ 237 (264)
...++ ||-||+.-+|++.-+|..-.+| -.++++|.|-+.+|....-+++.+++.... ..|+||.|||-..
T Consensus 524 ~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF 599 (758)
T COG4694 524 QLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYF 599 (758)
T ss_pred ccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecccee
Confidence 44555 9999999999988888743332 257899999999999999999999998764 6899999999544
No 468
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.03 E-value=0.0011 Score=68.89 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=48.4
Q ss_pred cCCCCEEEeecCCCCC-CHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH----------hhccceeEEEeeCCe
Q psy17516 192 FKPAPLYILDEVDAAL-DLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF----------SNANVIFRTKFVDGN 253 (264)
Q Consensus 192 ~~~~~illlDEPta~L-D~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~----------~~ad~l~~v~~~~g~ 253 (264)
...|+++++|||..+| |+.....+.++++...+ ++.+|++||+...+ +.|++.+- +.+|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~--L~n~~ 721 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKIC--LPNGA 721 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEE--CCCcc
Confidence 5789999999999999 68999999999998765 78899999998765 45675554 44543
No 469
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0022 Score=60.43 Aligned_cols=79 Identities=24% Similarity=0.266 Sum_probs=58.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHh-----hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHh-hcc-
Q psy17516 170 LGELSGGQRSLVALSLVLAML-----LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFS-NAN- 242 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~-----l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~-~ad- 242 (264)
..-.|-||+.-+++|+-+|-+ ....+|++|||++.|.||+..+..+++. . ..+.|+.|.|-+...+. .-.
T Consensus 273 ~~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~--~~~~Q~fvT~t~~~~~~~~~~~ 349 (363)
T COG1195 273 ADFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-I--ELGVQVFVTTTDLEDIDDNLDE 349 (363)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-c--ccCCeEEEEccCHHHhhhhhhc
Confidence 367999999999999988765 4567899999999999999999998887 2 23567776665544443 333
Q ss_pred --ceeEEEeeCCe
Q psy17516 243 --VIFRTKFVDGN 253 (264)
Q Consensus 243 --~l~~v~~~~g~ 253 (264)
++|.| ++|.
T Consensus 350 ~~~~f~V--~~g~ 360 (363)
T COG1195 350 NAQMFHV--EDGK 360 (363)
T ss_pred cceEEEE--ecce
Confidence 45553 3554
No 470
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.84 E-value=0.00037 Score=67.77 Aligned_cols=58 Identities=5% Similarity=-0.086 Sum_probs=40.8
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhhccchh-HHHhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEAMTKKS-IVESDRAKLLKVIEELDEKKKIALREAWLK 124 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~~-~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~ 124 (264)
+++|||++++||+++ |||||||+.....++.|+ +...+.+ +...++.+...+|..||.
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~ldg~~-----~~~~~~~ai~~LR~VFQ~ 86 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILAENKRKFSEGYEFFLDATH-----SFSPNKNAMETLDEIFDG 86 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEEECCEE-----CCCCCHHHHHHHHHHHHh
Confidence 458999999999997 999999994333455664 5555543 555666666667655543
No 471
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.74 E-value=0.015 Score=56.40 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc---CC-----eEEEEEeCcchHhhccceeEEEeeCCeEEEEE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK---TS-----QFIIVSLKEGMFSNANVIFRTKFVDGNSNVTR 258 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~---~~-----q~IiVTH~~~~~~~ad~l~~v~~~~g~s~i~~ 258 (264)
.|.|+|+.....+.+++.+... +. ++++.||+.. -..||++.. +.||.....+
T Consensus 276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e~i~d~v~~--i~dG~Ivls~ 336 (438)
T PRK07721 276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN-EPIADTVRG--ILDGHFVLDR 336 (438)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-chhhhhEEE--ecCEEEEEec
Confidence 5899999999999999998763 33 7779999976 478999998 4488775543
No 472
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.66 E-value=0.019 Score=50.42 Aligned_cols=76 Identities=14% Similarity=0.057 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC---CCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch--------Hh
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA---LDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM--------FS 239 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~---LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~--------~~ 239 (264)
..|.+..+++........ -.+|+++++||||+. .|......+...++.+.+ +.++++++|.... ..
T Consensus 100 ~~~~~~~~ll~~l~~~i~--~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~ 177 (234)
T PRK06067 100 WNSTLANKLLELIIEFIK--SKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRS 177 (234)
T ss_pred cCcchHHHHHHHHHHHHH--hcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHh
Confidence 345677777777655432 137899999999964 445555555555665443 6677788887543 23
Q ss_pred hccceeEEEe
Q psy17516 240 NANVIFRTKF 249 (264)
Q Consensus 240 ~ad~l~~v~~ 249 (264)
.||-++.+.+
T Consensus 178 l~DgvI~L~~ 187 (234)
T PRK06067 178 ICDVYLKLRA 187 (234)
T ss_pred heEEEEEEEe
Confidence 4666665443
No 473
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.57 E-value=0.0061 Score=63.67 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=44.2
Q ss_pred HHhhcCCCCEEEeecCCCCC-CHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh
Q psy17516 188 AMLLFKPAPLYILDEVDAAL-DLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS 239 (264)
Q Consensus 188 a~~l~~~~~illlDEPta~L-D~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~ 239 (264)
++++...|.++++|||..+| |+..+..+.++++...+ ++.+|++||+...+.
T Consensus 681 ~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 681 ERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 45567889999999999999 68889999999988765 788899999987664
No 474
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.48 E-value=0.00021 Score=56.15 Aligned_cols=26 Identities=12% Similarity=-0.229 Sum_probs=23.0
Q ss_pred ccccceeeeccceee------chhhHHHHhhh
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISM 87 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~ 87 (264)
+++++|++++|++++ ||||||++++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 456999999999997 99999999864
No 475
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.17 E-value=0.0063 Score=53.68 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=35.5
Q ss_pred cCCCCEEEeecCCCC------CCHHHHHHHHHHHHHhhc--CCeEEEEEeCcc
Q psy17516 192 FKPAPLYILDEVDAA------LDLSHTQNIGQMLKRHFK--TSQFIIVSLKEG 236 (264)
Q Consensus 192 ~~~~~illlDEPta~------LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~ 236 (264)
..+|+++++| |.++ +|+.....+++.|.++++ +.++|+++|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 4688999999 7654 799889999998888764 678889999754
No 476
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=96.09 E-value=0.0063 Score=57.01 Aligned_cols=75 Identities=31% Similarity=0.362 Sum_probs=60.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhh--cC----------CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLL--FK----------PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l--~~----------~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
-+.++||-|.|.++|++.-.|+.. ++ .|-+.|.||++-.|-|..++.+.+.|......-|||+.||-+
T Consensus 257 I~ls~lSdg~Rt~~Alvadiarr~v~LNp~Lsd~la~~tpgivLiDeIdlflhP~WQQqi~qkL~saFp~IQfIvstHsP 336 (440)
T COG3950 257 IPLSELSDGPRTKFALVADIARRCVVLNPYLSDALAKLTPGIVLIDEIDLFLHPKWQQQINQKLLSAFPEIQFIVSTHSP 336 (440)
T ss_pred cchhhcccchHHHHHHHHHHHHHHhhcChhhcchhhcCCCceEEeehhhhhcCHHHHHHHHHHHHhhchhhhhhhhcCCc
Confidence 467899999999999876655432 12 267999999999999999999999998777889999999997
Q ss_pred chHhhcc
Q psy17516 236 GMFSNAN 242 (264)
Q Consensus 236 ~~~~~ad 242 (264)
-.+.-.+
T Consensus 337 ~vlsTv~ 343 (440)
T COG3950 337 FVLSTVN 343 (440)
T ss_pred eEEEecc
Confidence 6554433
No 477
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.06 E-value=0.041 Score=43.98 Aligned_cols=48 Identities=19% Similarity=0.076 Sum_probs=34.1
Q ss_pred hcCCCCEEEeecCCCC----------CCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH
Q psy17516 191 LFKPAPLYILDEVDAA----------LDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF 238 (264)
Q Consensus 191 l~~~~~illlDEPta~----------LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~ 238 (264)
...+|+++++|||++- .|......+.+++....+ +.++|+++|.....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 4678899999999954 444445666666555443 67889999987644
No 478
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=95.58 E-value=0.065 Score=56.16 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC---CCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccc
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEV---DAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANV 243 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEP---ta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~ 243 (264)
..+|--..-+..++.++.. +.++.++|+||| |+.+|... ....++..+.+ +..++++||..++.+.+++
T Consensus 665 ~g~STF~~E~~~~~~il~~--at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNN--ATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHELTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHh--CCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHHHHHHhhh
Confidence 4466666778888877653 568899999999 99999654 23334444443 4678999999998888875
No 479
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=0.018 Score=53.61 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=35.4
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcch
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM 237 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~ 237 (264)
+++|||+.+||+..+..++++|.+...+++||++||+...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ 155 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADK 155 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHh
Confidence 4468999999999999999999988777889999999763
No 480
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.51 Score=48.91 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=70.4
Q ss_pred hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcC----CCCEEEeecCCC
Q psy17516 130 GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFK----PAPLYILDEVDA 205 (264)
Q Consensus 130 ~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~----~~~illlDEPta 205 (264)
+..|..+..|..-++......+.+ .|.-..-....+.+||-|-+=-+-+|+-||.+..- |-| +++|-..-
T Consensus 864 ~~~F~hlT~G~Yt~Iy~~e~~d~I-----~V~~~~G~~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~LP-~i~DD~fV 937 (984)
T COG4717 864 SEFFMHLTDGRYTGIYTQEDKDSI-----IVEHRAGGSKLAEELSQGTKEQLYLALRFALIHEVRTREPLP-FIADDIFV 937 (984)
T ss_pred HHHHhhccCCceeeeecccCCcee-----EEEecccccccHHHHhhhHHHHHHHHHHHHHHhhhccCCCCC-eeeccchh
Confidence 355666776765444322211111 11111223467889999999888888777654322 223 67799999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCeEEEEEeCcch
Q psy17516 206 ALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM 237 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~ 237 (264)
+-|+....+++++|++++.+.|+|.-||.+.+
T Consensus 938 hFD~~R~~r~~e~l~dls~~~QviYFTCHe~~ 969 (984)
T COG4717 938 HFDDERAKRMLELLADLSEGNQVIYFTCHEHT 969 (984)
T ss_pred ccCHHHHHHHHHHHHHhccCCeEEEEEechhh
Confidence 99999999999999999999999999998865
No 481
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=95.08 E-value=0.054 Score=56.37 Aligned_cols=47 Identities=23% Similarity=0.145 Sum_probs=39.5
Q ss_pred cCCCCEEEeecCCCCCC-HHHHHHHHHHHHHhhc-CCeEEEEEeCcchH
Q psy17516 192 FKPAPLYILDEVDAALD-LSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF 238 (264)
Q Consensus 192 ~~~~~illlDEPta~LD-~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~ 238 (264)
-..|.++++|||..+|| +.....+.++++...+ ++.+|++||+...+
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 681 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADI 681 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 45789999999999999 6778888888888754 78889999997654
No 482
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.96 E-value=0.032 Score=55.73 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhHH
Q psy17516 4 HEVTRKYQKLKEQRDKLERTVDKKAQL-SLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRTL 82 (264)
Q Consensus 4 ~~~~~~~~~l~~~~~~l~~~vn~~a~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKSTL 82 (264)
.++..+++.+..+++. | ||||.|+. +|+.+..+|.
T Consensus 451 ~~~~~~i~~l~~~L~~-g-~VNm~ai~~e~~e~~~~~~------------------------------------------ 486 (569)
T PRK04778 451 FEVSDEIEALAEELEE-K-PINMEAVNRLLEEATEDVE------------------------------------------ 486 (569)
T ss_pred HHHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHHHH------------------------------------------
Confidence 4578899999999999 7 99999999 9999999998
Q ss_pred HHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q psy17516 83 LFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG 130 (264)
Q Consensus 83 l~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~ 130 (264)
.+..+..++......+.+.|.. ..+||.+|..|+..|.
T Consensus 487 -----~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr~~~~~V~~~f~ 524 (569)
T PRK04778 487 -----TLEEETEELVENATLTEQLIQY-----ANRYRSDNEEVAEALN 524 (569)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCHHHHHHHH
Confidence 7888888999988877777765 5778889999998886
No 483
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.94 E-value=0.031 Score=61.54 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=49.0
Q ss_pred ccccCCCCHHHHHHHHHHHHHHH-hhc-------CCCC-----EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEe
Q psy17516 167 KESLGELSGGQRSLVALSLVLAM-LLF-------KPAP-----LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSL 233 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~-~l~-------~~~~-----illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH 233 (264)
....+.||||||+-++++..+|. +.. ..|+ ++++||. +.+|..+...++++++. -+.|+||+|=
T Consensus 1360 ~~~~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~--~~~q~i~~tP 1436 (1486)
T PRK04863 1360 RAESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCER--LDMQLLIAAP 1436 (1486)
T ss_pred ecCCCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHH--cCCcEEEech
Confidence 44478999999999888877651 112 1022 2489999 99999999999999984 3789999995
Q ss_pred C
Q psy17516 234 K 234 (264)
Q Consensus 234 ~ 234 (264)
.
T Consensus 1437 ~ 1437 (1486)
T PRK04863 1437 E 1437 (1486)
T ss_pred h
Confidence 4
No 484
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=94.42 E-value=0.16 Score=50.81 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhcc
Q psy17516 178 RSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNAN 242 (264)
Q Consensus 178 kqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad 242 (264)
.|.++.....-..-...|+++|.+||.+.|-|+.+...+++++.+..+.|.|++||-..+...+|
T Consensus 285 ~~~l~~~~~~~~~~~~r~~ILLiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~~d 349 (581)
T COG3593 285 MQLLQAIGSLELERVARPNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSLAD 349 (581)
T ss_pred HHHHHHHhHhhhhhhcccceEEEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccccC
Confidence 34444333322223344459999999999999999999999988776789999999999998887
No 485
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.35 E-value=0.13 Score=44.28 Aligned_cols=53 Identities=9% Similarity=0.020 Sum_probs=37.8
Q ss_pred HHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 188 AMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 188 a~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
+.++..+|+++++|||. |++....+. +....+..++.++|.....+..+|++.
T Consensus 68 ~~aLr~~pd~ii~gEir---d~e~~~~~l---~~a~~G~~v~~t~Ha~~~~~~~~Rl~~ 120 (198)
T cd01131 68 KAALRQDPDVILVGEMR---DLETIRLAL---TAAETGHLVMSTLHTNSAAKTIDRIID 120 (198)
T ss_pred HHHhcCCcCEEEEcCCC---CHHHHHHHH---HHHHcCCEEEEEecCCcHHHHHhHHHh
Confidence 34456789999999996 666444333 333346678899999888888888765
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.33 E-value=0.021 Score=48.60 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=34.7
Q ss_pred HHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHH
Q psy17516 156 LEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210 (264)
Q Consensus 156 l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~ 210 (264)
.+..+...+....+....|.|.+++..+ .+.+++++|+|.|.+..++.
T Consensus 67 ~l~~l~~~~~~~~p~~d~~~~~~~~~~~-------~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 67 HLQDLKNGKSVEIPVYDFKTHSRLKETV-------TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHHHCCCCEeccccccccCcccCCce-------ecCCCCEEEEechhhccchh
Confidence 3334455555666778889888776554 24788999999999998864
No 487
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=94.11 E-value=0.17 Score=52.69 Aligned_cols=63 Identities=21% Similarity=0.094 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHH---hhcCCCCEEEeecCCCCCC-HHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh
Q psy17516 177 QRSLVALSLVLAM---LLFKPAPLYILDEVDAALD-LSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS 239 (264)
Q Consensus 177 ekqrvaiA~~la~---~l~~~~~illlDEPta~LD-~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~ 239 (264)
+-..+.+.-+|.+ .+...|.++++|||...|| +.....+.++++...+ ++.++++||+...+.
T Consensus 622 ~~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 689 (800)
T PRK13898 622 VSLAPVLLYLFHRISISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDAS 689 (800)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3334555444433 2356789999999999999 7888888999988765 678889999976543
No 488
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.42 E-value=0.21 Score=41.88 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=42.2
Q ss_pred cCCCCEEEeecCCCCC--CHHHHHHHHHHHHHhhcCCeEEEEEeC--cchHhhccceeEE
Q psy17516 192 FKPAPLYILDEVDAAL--DLSHTQNIGQMLKRHFKTSQFIIVSLK--EGMFSNANVIFRT 247 (264)
Q Consensus 192 ~~~~~illlDEPta~L--D~~~~~~i~~ll~~~~~~~q~IiVTH~--~~~~~~ad~l~~v 247 (264)
..+.++++|||...++ +....+.+.++|+....+..+|+..++ +.+++.||-+-.+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm 152 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEM 152 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeec
Confidence 3578999999999874 455677899999876656666676666 4478999987664
No 489
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.72 E-value=0.63 Score=49.46 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceeechhhHH
Q psy17516 3 PHEVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVKAPLRTL 82 (264)
Q Consensus 3 ~~~~~~~~~~l~~~~~~l~~~vn~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~sGKSTL 82 (264)
..+++.+++.|...++.++ ++|+.|+..|+.+..+|.
T Consensus 967 ~~~l~~~i~~lg~aiee~~-~~~~~a~er~~~l~~q~~------------------------------------------ 1003 (1179)
T TIGR02168 967 EEEARRRLKRLENKIKELG-PVNLAAIEEYEELKERYD------------------------------------------ 1003 (1179)
T ss_pred HHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH------------------------------------------
Confidence 3578999999999999998 999999999999999999
Q ss_pred HHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 83 LFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 83 l~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+......+......|.+.+..+-..+...|..++..++..|
T Consensus 1004 -----dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F 1045 (1179)
T TIGR02168 1004 -----FLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENF 1045 (1179)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777777777777776556666766655555444
No 490
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.23 E-value=0.36 Score=49.24 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=51.1
Q ss_pred cCCCCHHHHHHHH---HHHHHHHhhcCC------CCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcch
Q psy17516 170 LGELSGGQRSLVA---LSLVLAMLLFKP------APLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM 237 (264)
Q Consensus 170 ~~~LSGGekqrva---iA~~la~~l~~~------~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~ 237 (264)
-..+|||||+.+| ||.+++-+++-| -.++|+||.++-=|+.....++..++++ +-+.++||-.+.+
T Consensus 988 S~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f--glh~v~iTPlk~I 1062 (1104)
T COG4913 988 SQGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF--GLHAVFITPLKEI 1062 (1104)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc--CceEEEechHHHH
Confidence 3589999999987 555555444433 2378999999999999999999999886 5677888876654
No 491
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.08 E-value=0.32 Score=44.74 Aligned_cols=56 Identities=11% Similarity=-0.066 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCC-eEEEEEeCcchHhhccceeE
Q psy17516 184 SLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTS-QFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 184 A~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~-q~IiVTH~~~~~~~ad~l~~ 246 (264)
+.++..++-..|+++++|||.+ ..+..+++....+. .++.++|........+|+..
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~ 264 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLAL 264 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHH
Confidence 3334444567899999999996 34566777765544 46889999887777777754
No 492
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.65 E-value=2.9 Score=31.43 Aligned_cols=61 Identities=25% Similarity=0.221 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHH-------HHHHhhcCCeEEEEEeC
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQ-------MLKRHFKTSQFIIVSLK 234 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~-------ll~~~~~~~q~IiVTH~ 234 (264)
.....++...+..++++ ...+|.++++||+....+......... ..........+|.++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~----~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALA----RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHH----HhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 34566677777666554 234579999999999999887766553 11222335677777774
No 493
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=89.51 E-value=1.2 Score=46.67 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC---CCCCCHHH-HHHHHHHHHHhhcCCeEEEEEeCcchHhhccc
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEV---DAALDLSH-TQNIGQMLKRHFKTSQFIIVSLKEGMFSNANV 243 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEP---ta~LD~~~-~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~ 243 (264)
.+|-=.--+..+|.++. .+.++.++|+||+ |+.+|... ...|++.|.+. .+..++++||..++...++.
T Consensus 651 g~STF~~Em~e~a~IL~--~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~-~~~~~~~~TH~~eL~~l~~~ 723 (840)
T TIGR01070 651 GRSTFMVEMTEAANILH--NATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEH-IRAKTLFATHYFELTALEES 723 (840)
T ss_pred CcchHHHHHHHHHHHHh--hCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhc-CCCEEEEEcCchHHHHHhhh
Confidence 34444466666776664 3577899999999 66666555 44455555542 35678899999888777753
No 494
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=89.43 E-value=2.4 Score=37.53 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHH-HHHhhc--CCeEEEEEeCcchHhhccc
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQM-LKRHFK--TSQFIIVSLKEGMFSNANV 243 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~l-l~~~~~--~~q~IiVTH~~~~~~~ad~ 243 (264)
.+|-=..-...++.++-. ..+..++|+||+-.|=++.....+..- +..+.+ +..+|++||...+.+..++
T Consensus 102 ~~S~F~~E~~~~~~il~~--~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~~~~ 174 (235)
T PF00488_consen 102 GLSTFMAEMKRLSSILRN--ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAELLER 174 (235)
T ss_dssp SSSHHHHHHHHHHHHHHH----TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGHHHH
T ss_pred ccccHHHhHHHHHhhhhh--cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHHhhh
Confidence 344444444455555432 356679999999999999887766654 344443 5678899999988766553
No 495
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=88.49 E-value=0.76 Score=42.36 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=43.4
Q ss_pred hhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh
Q psy17516 190 LLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS 239 (264)
Q Consensus 190 ~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~ 239 (264)
...++--++|..+|.|+|-|.-+..++++|.+.+. +.|+|+-||.+-++.
T Consensus 256 li~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSdhiiN 306 (374)
T COG4938 256 LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHIIN 306 (374)
T ss_pred eeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechHHHhh
Confidence 35677779999999999999999999999999875 889999999876653
No 496
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.63 E-value=1.3 Score=37.83 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=40.6
Q ss_pred cCCCCEEEeecCCCCCCH--HHHHHHHHHHHHhhcCCeEEEEEeC---cchHhhccceeEE
Q psy17516 192 FKPAPLYILDEVDAALDL--SHTQNIGQMLKRHFKTSQFIIVSLK---EGMFSNANVIFRT 247 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~--~~~~~i~~ll~~~~~~~q~IiVTH~---~~~~~~ad~l~~v 247 (264)
-.+.++++|||...+++. ...+.|.++|+... ..+=||+|-| +.+++.||-+-.+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp-~~~evILTGR~~p~~Lie~AD~VTEm 172 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRP-SHVDVILTGPEMPESLLAIADQITEL 172 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCC-CCCEEEEECCCCCHHHHHhCCeeeee
Confidence 356899999999998764 45678888888644 4455556655 5578999988774
No 497
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=87.23 E-value=1 Score=38.32 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=40.1
Q ss_pred cCCCCEEEeecCCCCCCH--HHHHHHHHHHHHhhcCCeEEEEEeC---cchHhhccceeEEE
Q psy17516 192 FKPAPLYILDEVDAALDL--SHTQNIGQMLKRHFKTSQFIIVSLK---EGMFSNANVIFRTK 248 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~--~~~~~i~~ll~~~~~~~q~IiVTH~---~~~~~~ad~l~~v~ 248 (264)
..+.++++|||...+++. -....|.++|+....+ +=+|+|-| +.+++.||.+-.+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~-~evVlTGR~~p~~l~e~AD~VTEm~ 155 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGH-QHVIITGRGCPQDLLELADLVTEMR 155 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCC-CEEEEECCCCCHHHHHhCceeeeec
Confidence 467899999999988764 4567888888764444 44555554 44789999887643
No 498
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.58 E-value=0.96 Score=42.86 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=37.4
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcch
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM 237 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~ 237 (264)
..++++++||++ .+|......++..+.+-..++.||++||++..
T Consensus 140 ~~~kVviIDead-~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~ 183 (365)
T PRK07471 140 GGWRVVIVDTAD-EMNANAANALLKVLEEPPARSLFLLVSHAPAR 183 (365)
T ss_pred CCCEEEEEechH-hcCHHHHHHHHHHHhcCCCCeEEEEEECCchh
Confidence 457899999998 68999999999888876667889999999764
No 499
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.52 E-value=2.4 Score=39.63 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=39.3
Q ss_pred HHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 184 SLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 184 A~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
+.+++.++-++|+++++||+. |+.....+++ ....+..++.+.|-.......+|+..
T Consensus 185 ~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa~tGh~v~~T~Ha~~~~~~~~Rl~~ 241 (343)
T TIGR01420 185 ANALRAALREDPDVILIGEMR---DLETVELALT---AAETGHLVFGTLHTNSAAQTIERIID 241 (343)
T ss_pred HHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HHHcCCcEEEEEcCCCHHHHHHHHHH
Confidence 333444566899999999997 7776654333 33346677788888777777777754
No 500
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=85.51 E-value=1.6 Score=37.72 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=40.3
Q ss_pred cCCCCEEEeecCCCCCCH--HHHHHHHHHHHHhhcCCeEEEEEeC---cchHhhccceeEE
Q psy17516 192 FKPAPLYILDEVDAALDL--SHTQNIGQMLKRHFKTSQFIIVSLK---EGMFSNANVIFRT 247 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~--~~~~~i~~ll~~~~~~~q~IiVTH~---~~~~~~ad~l~~v 247 (264)
-.+.++++|||...+++. ...+.|.++|+... ..+=||+|-| +.+++.||.+-.+
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp-~~~evVlTGR~~p~~Lie~ADlVTEm 172 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARP-GMQHVVITGRGAPRELIEAADLVTEM 172 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC-CCCEEEEECCCCCHHHHHhCchheec
Confidence 356799999999998873 44678888887643 4455666665 4478999988664
Done!