Query psy17516
Match_columns 264
No_of_seqs 402 out of 3347
Neff 6.9
Searched_HMMs 29240
Date Sat Aug 17 00:35:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 9.7E-36 3.3E-40 277.6 2.9 196 28-254 23-242 (366)
2 3tif_A Uncharacterized ABC tra 100.0 1.2E-34 4.2E-39 255.0 9.3 185 60-255 19-224 (235)
3 2pcj_A ABC transporter, lipopr 100.0 3.4E-35 1.2E-39 256.7 2.5 184 60-254 18-217 (224)
4 3kta_B Chromosome segregation 100.0 3E-33 1E-37 236.0 11.5 150 111-260 2-152 (173)
5 3gfo_A Cobalt import ATP-bindi 100.0 9.2E-33 3.2E-37 248.7 9.3 183 61-255 23-223 (275)
6 3fvq_A Fe(3+) IONS import ATP- 100.0 7.1E-34 2.4E-38 264.6 1.3 177 60-255 18-218 (359)
7 3rlf_A Maltose/maltodextrin im 100.0 7.2E-34 2.5E-38 266.3 1.0 173 60-255 17-213 (381)
8 1g6h_A High-affinity branched- 100.0 2.5E-32 8.5E-37 243.2 9.6 182 60-254 21-231 (257)
9 4g1u_C Hemin import ATP-bindin 100.0 1.6E-32 5.4E-37 245.9 8.0 182 59-255 24-227 (266)
10 1b0u_A Histidine permease; ABC 100.0 1.1E-32 3.9E-37 246.2 6.8 184 60-254 20-231 (262)
11 1vpl_A ABC transporter, ATP-bi 100.0 3.7E-33 1.3E-37 248.8 3.0 190 26-254 12-224 (256)
12 2olj_A Amino acid ABC transpor 100.0 1E-32 3.4E-37 246.9 5.5 197 29-254 24-237 (263)
13 1ji0_A ABC transporter; ATP bi 100.0 4E-32 1.4E-36 239.6 8.6 182 60-254 20-217 (240)
14 2yyz_A Sugar ABC transporter, 100.0 3.5E-33 1.2E-37 260.1 0.9 173 60-255 17-213 (359)
15 1z47_A CYSA, putative ABC-tran 100.0 9E-32 3.1E-36 250.2 7.8 173 60-255 29-225 (355)
16 2ff7_A Alpha-hemolysin translo 100.0 2.1E-31 7.3E-36 236.0 8.8 176 60-254 23-221 (247)
17 2it1_A 362AA long hypothetical 100.0 1.3E-31 4.5E-36 249.7 7.2 172 61-255 18-213 (362)
18 2ihy_A ABC transporter, ATP-bi 100.0 2.5E-31 8.6E-36 239.7 8.6 181 60-254 35-241 (279)
19 2yz2_A Putative ABC transporte 100.0 3.1E-31 1E-35 237.3 8.9 178 60-254 21-216 (266)
20 2d2e_A SUFC protein; ABC-ATPas 100.0 2.7E-31 9.3E-36 235.5 8.2 182 60-254 17-222 (250)
21 1v43_A Sugar-binding transport 100.0 1.3E-31 4.5E-36 250.5 6.2 187 29-255 11-221 (372)
22 1oxx_K GLCV, glucose, ABC tran 100.0 1.8E-31 6E-36 248.1 6.8 171 61-254 20-219 (353)
23 1g29_1 MALK, maltose transport 100.0 2.3E-31 7.8E-36 248.9 7.5 173 60-255 17-219 (372)
24 3d31_A Sulfate/molybdate ABC t 100.0 4.2E-31 1.4E-35 245.1 8.8 171 61-255 15-207 (348)
25 2ixe_A Antigen peptide transpo 100.0 3.3E-31 1.1E-35 237.9 7.7 180 60-254 33-234 (271)
26 2qi9_C Vitamin B12 import ATP- 100.0 7.2E-31 2.5E-35 233.1 9.0 175 61-254 15-211 (249)
27 2zu0_C Probable ATP-dependent 100.0 1.1E-30 3.9E-35 233.8 9.6 196 29-254 20-243 (267)
28 2nq2_C Hypothetical ABC transp 100.0 8.1E-31 2.8E-35 233.1 7.6 171 60-253 19-206 (253)
29 3nh6_A ATP-binding cassette SU 100.0 6.1E-31 2.1E-35 240.2 6.9 177 60-255 68-267 (306)
30 2onk_A Molybdate/tungstate ABC 100.0 4.3E-31 1.5E-35 233.3 2.4 169 62-254 15-205 (240)
31 1mv5_A LMRA, multidrug resista 100.0 5.2E-31 1.8E-35 232.7 2.4 177 60-254 16-215 (243)
32 2pjz_A Hypothetical protein ST 100.0 1.3E-30 4.5E-35 233.2 4.7 165 60-254 19-204 (263)
33 3gd7_A Fusion complex of cysti 100.0 1.1E-30 3.9E-35 245.5 4.3 189 30-255 20-232 (390)
34 2ghi_A Transport protein; mult 100.0 4.3E-30 1.5E-34 229.2 7.2 175 61-254 35-231 (260)
35 1sgw_A Putative ABC transporte 100.0 2.8E-30 9.5E-35 224.6 1.9 166 61-246 24-205 (214)
36 3b5x_A Lipid A export ATP-bind 100.0 1.1E-28 3.9E-33 242.2 10.9 178 59-254 356-556 (582)
37 2cbz_A Multidrug resistance-as 100.0 1.1E-29 3.9E-34 223.5 3.3 170 60-254 19-206 (237)
38 2pze_A Cystic fibrosis transme 100.0 4.1E-29 1.4E-33 218.8 6.8 166 60-254 22-207 (229)
39 3b60_A Lipid A export ATP-bind 99.9 1.3E-28 4.6E-33 241.7 7.5 178 59-254 356-556 (582)
40 3qf4_B Uncharacterized ABC tra 99.9 1.8E-28 6.1E-33 241.7 8.2 177 59-254 368-567 (598)
41 3qf4_A ABC transporter, ATP-bi 99.9 1.9E-28 6.6E-33 241.0 7.7 177 60-254 357-555 (587)
42 2yl4_A ATP-binding cassette SU 99.9 2.1E-28 7.3E-33 240.8 7.7 179 60-254 358-559 (595)
43 4a82_A Cystic fibrosis transme 99.9 2.4E-28 8.2E-33 239.8 7.4 177 60-255 355-554 (578)
44 2bbs_A Cystic fibrosis transme 99.9 6.9E-28 2.4E-32 218.4 6.7 164 61-254 53-236 (290)
45 4f4c_A Multidrug resistance pr 99.9 1.4E-27 4.7E-32 253.3 1.6 178 60-254 1093-1293(1321)
46 1w1w_A Structural maintenance 99.9 7E-26 2.4E-30 214.5 11.9 160 103-262 254-426 (430)
47 4f4c_A Multidrug resistance pr 99.9 4.3E-26 1.5E-30 241.9 8.2 178 59-255 431-631 (1321)
48 3ozx_A RNAse L inhibitor; ATP 99.9 1.5E-25 5.2E-30 218.5 11.1 166 61-248 283-460 (538)
49 1e69_A Chromosome segregation 99.9 4.7E-25 1.6E-29 201.5 13.3 100 162-261 209-308 (322)
50 3bk7_A ABC transporter ATP-bin 99.9 3E-25 1E-29 219.2 11.0 92 152-247 208-301 (607)
51 1yqt_A RNAse L inhibitor; ATP- 99.9 2.2E-25 7.4E-30 217.4 9.4 92 152-247 138-231 (538)
52 3g5u_A MCG1178, multidrug resi 99.9 1.7E-25 5.9E-30 236.7 7.5 178 60-254 1047-1247(1284)
53 3bk7_A ABC transporter ATP-bin 99.9 3.1E-25 1.1E-29 219.0 7.4 164 61-248 371-546 (607)
54 3g5u_A MCG1178, multidrug resi 99.9 1.9E-25 6.6E-30 236.3 5.9 176 60-254 404-602 (1284)
55 1yqt_A RNAse L inhibitor; ATP- 99.9 2.7E-25 9.1E-30 216.8 6.1 164 61-248 301-476 (538)
56 3ux8_A Excinuclease ABC, A sub 99.9 4.6E-24 1.6E-28 212.5 11.8 89 155-247 184-276 (670)
57 3ux8_A Excinuclease ABC, A sub 99.9 3.7E-24 1.2E-28 213.2 11.0 95 155-254 525-629 (670)
58 3j16_B RLI1P; ribosome recycli 99.9 3.8E-24 1.3E-28 211.3 10.4 163 61-247 362-541 (608)
59 3j16_B RLI1P; ribosome recycli 99.9 5E-24 1.7E-28 210.4 9.3 93 151-247 200-294 (608)
60 3ozx_A RNAse L inhibitor; ATP 99.9 4.3E-24 1.5E-28 208.3 6.9 91 152-246 118-209 (538)
61 2iw3_A Elongation factor 3A; a 99.9 1.4E-23 4.6E-28 215.7 6.3 163 59-255 448-624 (986)
62 2iw3_A Elongation factor 3A; a 99.9 2.2E-23 7.6E-28 214.2 6.9 95 152-254 879-976 (986)
63 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 7.7E-22 2.6E-26 162.1 12.7 93 165-257 50-145 (148)
64 3pih_A Uvrabc system protein A 99.9 5E-22 1.7E-26 203.4 8.1 93 154-247 786-880 (916)
65 4aby_A DNA repair protein RECN 99.9 1.9E-21 6.4E-26 182.0 11.2 78 173-254 296-377 (415)
66 2r6f_A Excinuclease ABC subuni 99.8 1.3E-21 4.3E-26 200.2 10.6 90 154-246 826-919 (972)
67 2vf7_A UVRA2, excinuclease ABC 99.8 2.9E-22 9.8E-27 203.7 5.3 90 153-246 710-804 (842)
68 2ygr_A Uvrabc system protein A 99.8 2.5E-21 8.7E-26 198.5 11.0 90 154-246 844-937 (993)
69 3qkt_A DNA double-strand break 99.8 3.6E-20 1.2E-24 170.3 14.5 98 161-258 237-337 (339)
70 2npi_A Protein CLP1; CLP1-PCF1 99.8 7.1E-22 2.4E-26 189.3 -2.1 168 28-253 117-327 (460)
71 4gp7_A Metallophosphoesterase; 99.8 6E-20 2.1E-24 152.9 6.5 74 169-246 80-170 (171)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 8.4E-19 2.9E-23 163.1 11.1 86 167-254 274-362 (365)
73 3auy_A DNA double-strand break 99.7 4.1E-17 1.4E-21 151.6 11.8 90 168-257 276-368 (371)
74 4ad8_A DNA repair protein RECN 99.7 6.7E-17 2.3E-21 156.4 13.2 81 164-248 388-471 (517)
75 3pih_A Uvrabc system protein A 99.7 3.1E-17 1.1E-21 168.1 11.2 89 155-247 446-538 (916)
76 2r6f_A Excinuclease ABC subuni 99.7 4.8E-17 1.6E-21 166.6 9.6 89 156-247 487-578 (972)
77 2ygr_A Uvrabc system protein A 99.7 7.2E-17 2.5E-21 165.7 9.8 89 156-247 504-595 (993)
78 2vf7_A UVRA2, excinuclease ABC 99.6 4.2E-16 1.4E-20 158.5 10.3 88 156-247 362-453 (842)
79 3b85_A Phosphate starvation-in 99.6 6.2E-17 2.1E-21 139.6 -4.5 55 176-239 108-162 (208)
80 1tq4_A IIGP1, interferon-induc 99.5 8.1E-17 2.8E-21 152.3 -8.4 160 59-246 36-249 (413)
81 2o5v_A DNA replication and rep 99.5 3E-14 1E-18 132.4 7.5 81 167-254 259-345 (359)
82 3thx_B DNA mismatch repair pro 99.5 3.4E-14 1.1E-18 145.8 6.9 138 58-244 659-805 (918)
83 1tf7_A KAIC; homohexamer, hexa 99.4 1.9E-13 6.5E-18 132.4 9.2 84 160-248 341-441 (525)
84 2v9p_A Replication protein E1; 99.4 3.5E-16 1.2E-20 142.5 -9.9 133 61-254 115-255 (305)
85 3thx_A DNA mismatch repair pro 99.4 2.2E-13 7.5E-18 140.1 9.4 145 59-254 649-802 (934)
86 1ye8_A Protein THEP1, hypothet 99.4 1.4E-13 4.8E-18 115.6 5.6 73 165-243 69-152 (178)
87 2pt7_A CAG-ALFA; ATPase, prote 99.3 1.6E-14 5.5E-19 132.6 -4.8 61 175-246 225-286 (330)
88 1tf7_A KAIC; homohexamer, hexa 99.3 4.7E-14 1.6E-18 136.6 -1.8 151 63-247 29-207 (525)
89 1cr0_A DNA primase/helicase; R 99.3 1.7E-12 5.6E-17 116.1 8.1 76 168-248 125-233 (296)
90 3b9q_A Chloroplast SRP recepto 99.3 1.4E-13 4.7E-18 125.0 -0.5 143 63-237 91-259 (302)
91 1z6g_A Guanylate kinase; struc 99.2 6.2E-16 2.1E-20 133.5 -19.3 75 171-246 121-206 (218)
92 2o8b_B DNA mismatch repair pro 99.2 1.9E-12 6.5E-17 134.4 2.7 136 59-244 769-922 (1022)
93 1znw_A Guanylate kinase, GMP k 99.2 5.1E-14 1.7E-18 120.0 -8.2 73 159-246 121-200 (207)
94 2ehv_A Hypothetical protein PH 99.2 9.3E-12 3.2E-16 107.2 5.4 58 192-249 133-207 (251)
95 1ewq_A DNA mismatch repair pro 99.2 4E-12 1.4E-16 128.4 2.4 66 172-241 635-704 (765)
96 2og2_A Putative signal recogni 99.2 3.5E-13 1.2E-17 125.2 -5.0 143 63-237 148-316 (359)
97 1wb9_A DNA mismatch repair pro 99.2 1.7E-11 5.7E-16 124.5 6.8 73 169-246 666-741 (800)
98 3sop_A Neuronal-specific septi 99.2 1.5E-13 5E-18 122.9 -8.5 64 164-238 90-153 (270)
99 1nlf_A Regulatory protein REPA 99.1 8.4E-11 2.9E-15 104.3 7.6 77 155-238 101-184 (279)
100 3aez_A Pantothenate kinase; tr 99.1 2.3E-12 7.9E-17 117.4 -4.8 53 152-209 157-209 (312)
101 2w0m_A SSO2452; RECA, SSPF, un 99.0 1.9E-10 6.6E-15 97.4 6.2 74 172-249 103-191 (235)
102 4a74_A DNA repair and recombin 99.0 4.4E-10 1.5E-14 95.4 6.9 66 192-257 123-207 (231)
103 2jeo_A Uridine-cytidine kinase 99.0 2.2E-11 7.4E-16 106.3 -1.5 58 164-235 108-165 (245)
104 2dpy_A FLII, flagellum-specifi 99.0 6.1E-12 2.1E-16 119.7 -6.8 69 169-254 255-333 (438)
105 1pui_A ENGB, probable GTP-bind 98.9 1.6E-10 5.4E-15 97.0 1.5 66 155-224 131-198 (210)
106 2eyu_A Twitching motility prot 98.9 1.2E-10 4.1E-15 103.4 0.6 57 180-246 88-144 (261)
107 2cvh_A DNA repair and recombin 98.9 3.2E-09 1.1E-13 89.6 9.4 77 170-250 82-185 (220)
108 2obl_A ESCN; ATPase, hydrolase 98.9 3.4E-11 1.2E-15 111.2 -4.9 71 168-255 167-245 (347)
109 2i3b_A HCR-ntpase, human cance 98.8 9.4E-12 3.2E-16 105.6 -10.8 74 167-245 78-158 (189)
110 3asz_A Uridine kinase; cytidin 98.8 8.4E-12 2.9E-16 105.6 -11.4 78 153-234 70-160 (211)
111 1pzn_A RAD51, DNA repair and r 98.8 5.5E-09 1.9E-13 96.3 6.4 63 174-236 208-287 (349)
112 1lw7_A Transcriptional regulat 98.7 1.6E-09 5.5E-14 100.0 0.0 71 171-244 257-338 (365)
113 2qnr_A Septin-2, protein NEDD5 98.6 1.9E-10 6.6E-15 103.9 -9.0 59 166-236 107-168 (301)
114 1rj9_A FTSY, signal recognitio 98.5 4.2E-09 1.4E-13 95.5 -2.8 59 172-239 202-262 (304)
115 3jvv_A Twitching mobility prot 98.5 1.4E-07 4.6E-12 87.4 6.0 53 188-246 190-242 (356)
116 3lda_A DNA repair protein RAD5 98.4 9.3E-07 3.2E-11 83.0 10.7 58 177-234 256-327 (400)
117 1n0w_A DNA repair protein RAD5 98.4 1.2E-06 4E-11 74.7 10.0 65 193-257 118-216 (243)
118 1zp6_A Hypothetical protein AT 98.3 2.2E-09 7.4E-14 89.0 -8.7 67 168-246 105-171 (191)
119 3ec2_A DNA replication protein 98.3 1E-06 3.4E-11 72.5 6.5 43 194-236 100-144 (180)
120 2bbw_A Adenylate kinase 4, AK4 98.2 2.2E-07 7.6E-12 80.5 1.3 47 166-223 146-197 (246)
121 1sxj_E Activator 1 40 kDa subu 98.2 1.2E-06 4.1E-11 79.2 5.9 43 193-236 133-175 (354)
122 1nij_A Hypothetical protein YJ 98.1 2.9E-09 1E-13 96.7 -13.5 61 160-236 130-190 (318)
123 3szr_A Interferon-induced GTP- 98.1 5.5E-08 1.9E-12 95.9 -5.5 46 192-237 144-198 (608)
124 2qag_C Septin-7; cell cycle, c 98.0 9.4E-08 3.2E-12 90.3 -5.7 58 172-237 118-179 (418)
125 1odf_A YGR205W, hypothetical 3 97.8 1.3E-06 4.4E-11 78.5 -2.5 40 167-210 129-168 (290)
126 2r6a_A DNAB helicase, replicat 97.8 0.00023 7.7E-09 67.3 12.8 81 164-248 287-397 (454)
127 1udx_A The GTP-binding protein 97.7 6.8E-07 2.3E-11 84.4 -5.6 59 167-233 247-306 (416)
128 2f1r_A Molybdopterin-guanine d 97.6 2.4E-07 8.1E-12 77.1 -9.1 50 171-224 102-161 (171)
129 2qm8_A GTPase/ATPase; G protei 97.6 9.2E-06 3.1E-10 74.3 0.1 52 164-223 201-259 (337)
130 3euj_A Chromosome partition pr 97.5 0.00016 5.4E-09 69.4 7.6 88 165-256 372-474 (483)
131 3e70_C DPA, signal recognition 97.4 6.9E-05 2.4E-09 68.4 3.6 40 191-237 240-281 (328)
132 2dr3_A UPF0273 protein PH0284; 97.4 0.00031 1E-08 59.5 6.9 57 193-249 127-196 (247)
133 2yhs_A FTSY, cell division pro 97.4 2.5E-05 8.7E-10 75.2 0.0 39 62-100 283-329 (503)
134 2gza_A Type IV secretion syste 97.3 1.1E-05 3.7E-10 74.4 -3.1 62 174-246 236-298 (361)
135 1ls1_A Signal recognition part 97.3 0.0016 5.5E-08 58.2 10.8 52 178-233 168-220 (295)
136 2rcn_A Probable GTPase ENGC; Y 97.3 0.00012 4.2E-09 67.6 3.1 51 153-223 295-345 (358)
137 1vma_A Cell division protein F 97.1 0.0015 5E-08 59.0 8.8 31 171-205 164-197 (306)
138 1lvg_A Guanylate kinase, GMP k 97.1 3E-07 1E-11 77.6 -15.1 34 190-223 120-153 (198)
139 2x8a_A Nuclear valosin-contain 97.0 2.9E-06 9.9E-11 75.3 -10.2 50 165-220 130-191 (274)
140 1htw_A HI0065; nucleotide-bind 97.0 0.00016 5.5E-09 59.0 0.8 40 60-99 21-67 (158)
141 2px0_A Flagellar biosynthesis 96.6 0.0077 2.6E-07 53.8 9.1 51 193-245 181-237 (296)
142 2kjq_A DNAA-related protein; s 96.6 0.0027 9.2E-08 50.9 5.2 41 193-234 82-124 (149)
143 2ewv_A Twitching motility prot 96.2 0.0043 1.5E-07 57.2 5.3 56 181-246 200-255 (372)
144 1in4_A RUVB, holliday junction 96.1 1.6E-05 5.4E-10 72.2 -11.7 44 160-224 151-194 (334)
145 3lnc_A Guanylate kinase, GMP k 95.7 0.0031 1.1E-07 53.4 1.5 32 59-90 14-52 (231)
146 3tr0_A Guanylate kinase, GMP k 94.7 0.011 3.6E-07 48.6 1.8 24 66-89 1-30 (205)
147 3nwj_A ATSK2; P loop, shikimat 94.6 0.0041 1.4E-07 54.4 -1.1 48 25-88 13-70 (250)
148 3euj_A Chromosome partition pr 94.6 0.006 2.1E-07 58.4 -0.0 40 60-100 18-65 (483)
149 2qag_B Septin-6, protein NEDD5 94.3 0.0076 2.6E-07 56.8 -0.1 57 172-235 161-219 (427)
150 1sq5_A Pantothenate kinase; P- 93.9 0.0092 3.1E-07 53.3 -0.4 28 70-97 78-115 (308)
151 2e87_A Hypothetical protein PH 93.8 0.16 5.3E-06 46.1 7.7 70 161-235 220-292 (357)
152 3k1j_A LON protease, ATP-depen 93.5 0.0029 1E-07 61.8 -4.8 47 170-221 181-227 (604)
153 2ce7_A Cell division protein F 93.3 0.14 4.9E-06 48.7 6.7 60 175-238 93-167 (476)
154 3vaa_A Shikimate kinase, SK; s 93.2 0.031 1.1E-06 46.1 1.8 30 58-87 11-46 (199)
155 2xau_A PRE-mRNA-splicing facto 92.6 0.07 2.4E-06 53.8 3.6 68 167-238 185-255 (773)
156 1lw7_A Transcriptional regulat 90.9 0.098 3.4E-06 47.5 2.4 34 171-204 295-329 (365)
157 1s96_A Guanylate kinase, GMP k 90.6 0.18 6.3E-06 42.7 3.7 39 193-239 106-144 (219)
158 2j41_A Guanylate kinase; GMP, 90.5 0.098 3.3E-06 42.6 1.8 23 67-89 1-29 (207)
159 3c8u_A Fructokinase; YP_612366 90.2 0.1 3.5E-06 43.3 1.7 22 69-90 19-46 (208)
160 1g5t_A COB(I)alamin adenosyltr 89.7 0.29 9.8E-06 41.2 4.1 55 193-248 119-178 (196)
161 1s96_A Guanylate kinase, GMP k 89.7 0.13 4.4E-06 43.7 1.9 24 67-90 11-40 (219)
162 2oap_1 GSPE-2, type II secreti 89.0 0.059 2E-06 51.8 -0.8 57 170-242 398-458 (511)
163 1ixz_A ATP-dependent metallopr 88.6 0.2 7E-06 42.5 2.4 29 62-90 41-73 (254)
164 2zr9_A Protein RECA, recombina 88.1 1.2 4.2E-05 40.3 7.5 52 181-234 128-197 (349)
165 1iy2_A ATP-dependent metallopr 88.1 0.23 7.9E-06 42.9 2.5 30 62-91 65-98 (278)
166 3kta_A Chromosome segregation 87.6 0.24 8.4E-06 39.6 2.2 26 63-89 18-49 (182)
167 2vp4_A Deoxynucleoside kinase; 86.9 0.19 6.4E-06 42.4 1.2 25 65-89 13-43 (230)
168 2p67_A LAO/AO transport system 85.4 0.21 7E-06 45.1 0.7 27 62-88 46-78 (341)
169 2z4s_A Chromosomal replication 84.8 0.97 3.3E-05 42.1 5.0 42 194-235 194-237 (440)
170 1u0l_A Probable GTPase ENGC; p 84.1 0.25 8.5E-06 43.7 0.6 31 67-97 164-202 (301)
171 1t9h_A YLOQ, probable GTPase E 84.0 0.27 9.3E-06 44.1 0.8 23 67-89 168-196 (307)
172 1fnn_A CDC6P, cell division co 84.0 0.64 2.2E-05 41.3 3.3 45 193-238 124-172 (389)
173 1svm_A Large T antigen; AAA+ f 83.3 0.23 7.9E-06 45.8 0.0 29 61-89 158-192 (377)
174 4eun_A Thermoresistant glucoki 83.0 0.47 1.6E-05 38.8 1.9 23 67-89 24-52 (200)
175 3tqc_A Pantothenate kinase; bi 83.0 0.51 1.7E-05 42.5 2.2 14 77-90 103-116 (321)
176 1ypw_A Transitional endoplasmi 82.6 1.1 3.7E-05 45.2 4.7 24 66-89 232-261 (806)
177 4a1f_A DNAB helicase, replicat 82.5 3.1 0.0001 37.7 7.2 32 171-206 108-139 (338)
178 1zu4_A FTSY; GTPase, signal re 82.3 2.1 7.2E-05 38.3 6.0 26 63-88 96-127 (320)
179 2ewv_A Twitching motility prot 81.6 0.37 1.3E-05 44.1 0.7 63 168-236 279-352 (372)
180 1njg_A DNA polymerase III subu 81.3 1.5 5E-05 35.5 4.3 43 193-236 125-167 (250)
181 3uie_A Adenylyl-sulfate kinase 81.1 0.36 1.2E-05 39.6 0.4 25 65-89 18-48 (200)
182 1kgd_A CASK, peripheral plasma 81.1 0.62 2.1E-05 37.5 1.9 19 71-89 4-28 (180)
183 1ye8_A Protein THEP1, hypothet 79.6 0.65 2.2E-05 37.8 1.5 14 77-90 11-24 (178)
184 3a00_A Guanylate kinase, GMP k 79.6 0.72 2.5E-05 37.3 1.8 13 77-89 12-24 (186)
185 1qhl_A Protein (cell division 79.3 0.25 8.4E-06 42.4 -1.2 34 66-100 22-63 (227)
186 2bdt_A BH3686; alpha-beta prot 79.1 0.019 6.4E-07 46.7 -8.1 64 174-245 96-168 (189)
187 1oix_A RAS-related protein RAB 78.4 1.1 3.8E-05 36.1 2.6 35 181-221 154-188 (191)
188 1rz3_A Hypothetical protein rb 78.0 0.57 2E-05 38.4 0.7 22 68-89 18-45 (201)
189 2o5v_A DNA replication and rep 77.6 0.9 3.1E-05 41.5 2.0 25 63-88 18-48 (359)
190 3b9p_A CG5977-PA, isoform A; A 77.6 4.8 0.00016 34.5 6.6 32 174-209 97-128 (297)
191 2qtf_A Protein HFLX, GTP-bindi 77.0 1.7 5.9E-05 39.5 3.7 65 155-223 283-352 (364)
192 2qt1_A Nicotinamide riboside k 75.2 1.1 3.6E-05 36.6 1.6 22 67-88 16-43 (207)
193 1kag_A SKI, shikimate kinase I 74.1 1.2 4.2E-05 34.9 1.7 13 77-89 15-27 (173)
194 1knq_A Gluconate kinase; ALFA/ 73.6 1.3 4.6E-05 34.8 1.8 19 70-88 6-30 (175)
195 2bdt_A BH3686; alpha-beta prot 72.8 1.3 4.4E-05 35.5 1.5 12 77-88 13-24 (189)
196 4e22_A Cytidylate kinase; P-lo 72.4 1.4 4.7E-05 37.7 1.6 18 70-87 25-48 (252)
197 2yv5_A YJEQ protein; hydrolase 72.3 0.96 3.3E-05 40.0 0.7 35 151-185 265-300 (302)
198 1p9r_A General secretion pathw 72.1 1.3 4.6E-05 41.2 1.7 35 157-199 280-314 (418)
199 3tau_A Guanylate kinase, GMP k 71.3 1.6 5.5E-05 35.9 1.8 20 70-89 6-31 (208)
200 4eaq_A DTMP kinase, thymidylat 70.8 1.6 5.4E-05 36.9 1.7 26 63-88 14-48 (229)
201 3qf7_A RAD50; ABC-ATPase, ATPa 69.9 1.6 5.3E-05 39.7 1.5 24 64-87 16-44 (365)
202 2pez_A Bifunctional 3'-phospho 68.7 2 6.9E-05 34.0 1.8 18 71-88 4-27 (179)
203 2eyu_A Twitching motility prot 68.4 0.005 1.7E-07 54.0 -15.0 62 167-234 167-239 (261)
204 1y63_A LMAJ004144AAA protein; 68.3 2 6.8E-05 34.5 1.7 25 64-88 2-32 (184)
205 1m2o_B GTP-binding protein SAR 67.1 2.2 7.6E-05 34.1 1.7 25 63-87 15-44 (190)
206 3cr8_A Sulfate adenylyltranfer 66.6 1.8 6E-05 41.9 1.2 23 67-89 364-392 (552)
207 2chg_A Replication factor C sm 66.0 7.8 0.00027 30.6 4.9 43 193-236 101-143 (226)
208 1l8q_A Chromosomal replication 64.2 7.3 0.00025 33.9 4.7 42 194-235 98-141 (324)
209 2kjq_A DNAA-related protein; s 64.0 2.5 8.7E-05 33.1 1.5 19 71-89 35-59 (149)
210 2f9l_A RAB11B, member RAS onco 63.3 2.6 8.8E-05 33.8 1.4 34 183-222 132-165 (199)
211 1ni3_A YCHF GTPase, YCHF GTP-b 62.8 2.5 8.6E-05 39.0 1.4 51 194-245 139-193 (392)
212 1j8m_F SRP54, signal recogniti 62.8 13 0.00046 32.5 6.2 23 65-88 92-120 (297)
213 1f6b_A SAR1; gtpases, N-termin 62.5 1.4 4.9E-05 35.6 -0.3 25 63-87 17-46 (198)
214 2qby_A CDC6 homolog 1, cell di 62.0 2.3 7.7E-05 37.4 0.9 47 193-239 127-177 (386)
215 3ney_A 55 kDa erythrocyte memb 61.7 3.3 0.00011 34.5 1.9 23 66-88 13-41 (197)
216 1sxj_D Activator 1 41 kDa subu 61.5 8 0.00027 33.6 4.5 42 194-236 133-174 (353)
217 1w1w_A Structural maintenance 61.0 3.3 0.00011 38.1 1.9 23 67-89 21-49 (430)
218 2dhr_A FTSH; AAA+ protein, hex 61.0 6 0.0002 37.7 3.7 28 61-88 55-86 (499)
219 2qag_B Septin-6, protein NEDD5 59.9 4.8 0.00017 37.6 2.8 28 62-89 30-65 (427)
220 1v5w_A DMC1, meiotic recombina 59.8 34 0.0012 30.3 8.4 42 193-234 218-273 (343)
221 2z43_A DNA repair and recombin 59.5 29 0.00098 30.4 7.8 42 193-234 202-257 (324)
222 1ega_A Protein (GTP-binding pr 58.9 3.3 0.00011 36.4 1.4 43 173-224 101-144 (301)
223 1jr3_A DNA polymerase III subu 58.4 9 0.00031 33.6 4.3 42 194-236 119-160 (373)
224 1oix_A RAS-related protein RAB 57.9 3.9 0.00013 32.7 1.6 13 77-89 40-52 (191)
225 2ius_A DNA translocase FTSK; n 57.7 4.7 0.00016 38.6 2.4 64 171-236 267-343 (512)
226 3v2d_F 50S ribosomal protein L 57.3 14 0.00046 31.2 4.9 75 170-248 98-174 (210)
227 2ffh_A Protein (FFH); SRP54, s 56.8 23 0.00079 32.9 6.9 81 4-88 25-120 (425)
228 3llm_A ATP-dependent RNA helic 56.4 14 0.00047 30.6 4.9 41 192-232 174-215 (235)
229 2f9l_A RAB11B, member RAS onco 56.1 4.1 0.00014 32.6 1.5 13 77-89 16-28 (199)
230 2yvu_A Probable adenylyl-sulfa 55.7 4.4 0.00015 32.2 1.6 22 67-88 8-35 (186)
231 4ad8_A DNA repair protein RECN 55.7 4.6 0.00016 38.2 1.9 24 63-87 52-81 (517)
232 3t34_A Dynamin-related protein 55.4 4 0.00014 36.6 1.4 68 161-233 142-212 (360)
233 3syl_A Protein CBBX; photosynt 54.9 56 0.0019 27.6 8.7 41 194-234 130-178 (309)
234 2ftc_D Mitochondrial ribosomal 54.3 26 0.00089 28.6 6.1 67 179-248 74-145 (175)
235 3u61_B DNA polymerase accessor 54.1 16 0.00054 31.6 5.1 42 194-236 105-147 (324)
236 3n70_A Transport activator; si 54.0 14 0.00048 28.1 4.2 41 194-235 76-116 (145)
237 1a5t_A Delta prime, HOLB; zinc 53.7 8.4 0.00029 34.0 3.3 42 194-236 108-149 (334)
238 1m7g_A Adenylylsulfate kinase; 53.2 3.7 0.00013 33.5 0.8 22 67-88 20-47 (211)
239 2qag_A Septin-2, protein NEDD5 51.8 3.4 0.00012 37.4 0.3 25 60-87 31-58 (361)
240 2www_A Methylmalonic aciduria 51.8 5.7 0.00019 35.7 1.8 46 174-223 228-277 (349)
241 2gj8_A MNME, tRNA modification 51.7 6 0.00021 30.9 1.8 12 77-88 15-26 (172)
242 3bh0_A DNAB-like replicative h 50.8 13 0.00045 32.6 4.0 20 67-86 63-88 (315)
243 1cke_A CK, MSSA, protein (cyti 50.6 5.8 0.0002 32.4 1.5 12 77-88 16-27 (227)
244 2gno_A DNA polymerase III, gam 50.2 10 0.00034 33.4 3.2 42 194-236 82-123 (305)
245 1b9m_A Protein (mode); DNA-bin 50.2 3.7 0.00013 34.9 0.2 36 152-188 54-89 (265)
246 2if2_A Dephospho-COA kinase; a 49.9 6.3 0.00022 31.6 1.6 12 77-88 12-23 (204)
247 3cm0_A Adenylate kinase; ATP-b 49.7 6.2 0.00021 31.1 1.5 11 77-87 15-25 (186)
248 1jjv_A Dephospho-COA kinase; P 49.5 6.3 0.00021 31.8 1.6 12 77-88 13-24 (206)
249 3h4m_A Proteasome-activating n 49.0 11 0.00037 31.9 3.1 46 192-237 108-168 (285)
250 3szr_A Interferon-induced GTP- 48.5 12 0.00041 36.3 3.7 69 161-234 153-224 (608)
251 4b4t_J 26S protease regulatory 48.2 29 0.001 32.1 6.1 53 186-238 233-300 (405)
252 3co5_A Putative two-component 47.9 39 0.0013 25.5 6.0 40 195-235 76-116 (143)
253 1iqp_A RFCS; clamp loader, ext 47.8 22 0.00077 30.2 5.0 42 193-235 109-150 (327)
254 2wji_A Ferrous iron transport 47.0 7 0.00024 30.1 1.4 12 77-88 14-25 (165)
255 1ni3_A YCHF GTPase, YCHF GTP-b 46.7 0.27 9.3E-06 45.6 -8.0 21 68-88 16-42 (392)
256 4b4t_L 26S protease subunit RP 46.3 35 0.0012 31.8 6.4 52 187-238 267-333 (437)
257 2orv_A Thymidine kinase; TP4A 45.9 30 0.001 29.6 5.3 51 193-248 89-150 (234)
258 3f6c_A Positive transcription 45.8 46 0.0016 23.7 5.9 41 193-236 45-85 (134)
259 2wjg_A FEOB, ferrous iron tran 45.6 7.8 0.00027 30.2 1.5 12 77-88 18-29 (188)
260 2w58_A DNAI, primosome compone 45.3 12 0.0004 30.0 2.6 41 194-234 115-158 (202)
261 1sxj_B Activator 1 37 kDa subu 45.2 18 0.0006 30.8 3.9 42 194-236 107-148 (323)
262 1dmg_A Ribosomal protein L4; a 44.9 42 0.0014 28.5 6.1 67 179-248 105-177 (225)
263 3m6a_A ATP-dependent protease 44.9 7 0.00024 37.3 1.3 27 61-88 98-130 (543)
264 1jr3_D DNA polymerase III, del 44.8 34 0.0012 29.8 5.8 44 191-234 73-116 (343)
265 2zej_A Dardarin, leucine-rich 44.8 7.7 0.00026 30.5 1.4 12 77-88 13-24 (184)
266 2rjn_A Response regulator rece 44.0 67 0.0023 23.6 6.7 42 192-236 49-90 (154)
267 3hr8_A Protein RECA; alpha and 43.8 10 0.00034 34.5 2.1 20 68-87 57-82 (356)
268 1dbw_A Transcriptional regulat 43.5 73 0.0025 22.4 6.7 42 192-236 45-86 (126)
269 3t61_A Gluconokinase; PSI-biol 43.5 8.6 0.00029 30.9 1.5 11 77-87 29-39 (202)
270 2qor_A Guanylate kinase; phosp 43.4 8.5 0.00029 31.1 1.5 19 69-87 9-33 (204)
271 3bos_A Putative DNA replicatio 43.3 25 0.00085 28.2 4.4 42 193-234 103-147 (242)
272 2ga8_A Hypothetical 39.9 kDa p 42.8 4.7 0.00016 36.9 -0.3 26 63-88 13-46 (359)
273 2dy1_A Elongation factor G; tr 42.8 8.3 0.00028 37.9 1.5 41 193-237 98-138 (665)
274 2b8t_A Thymidine kinase; deoxy 42.7 21 0.00072 30.0 3.9 52 193-248 88-150 (223)
275 2qxy_A Response regulator; reg 42.5 75 0.0026 22.9 6.7 41 192-236 46-86 (142)
276 3cf0_A Transitional endoplasmi 42.3 36 0.0012 29.3 5.5 46 193-238 107-167 (301)
277 2ce2_X GTPase HRAS; signaling 42.2 10 0.00035 28.3 1.6 11 77-87 14-24 (166)
278 4hlc_A DTMP kinase, thymidylat 42.0 10 0.00035 31.3 1.7 11 77-87 13-23 (205)
279 2erx_A GTP-binding protein DI- 41.5 10 0.00034 28.7 1.5 11 77-87 14-24 (172)
280 4e7p_A Response regulator; DNA 41.1 81 0.0028 23.1 6.8 42 192-236 64-105 (150)
281 3kb2_A SPBC2 prophage-derived 40.8 10 0.00035 29.1 1.5 11 77-87 12-22 (173)
282 1z2a_A RAS-related protein RAB 40.6 10 0.00034 28.6 1.4 11 77-87 16-26 (168)
283 2p5t_B PEZT; postsegregational 40.6 15 0.00052 30.8 2.7 21 68-88 28-54 (253)
284 2rdm_A Response regulator rece 40.4 90 0.0031 21.9 6.8 39 194-235 50-89 (132)
285 1u8z_A RAS-related protein RAL 40.2 10 0.00035 28.4 1.4 11 77-87 15-25 (168)
286 2fn4_A P23, RAS-related protei 40.2 11 0.00038 28.7 1.6 11 77-87 20-30 (181)
287 1kao_A RAP2A; GTP-binding prot 39.8 11 0.00038 28.2 1.5 10 77-86 14-23 (167)
288 2v54_A DTMP kinase, thymidylat 39.7 11 0.00039 29.9 1.7 11 77-87 15-25 (204)
289 4ag6_A VIRB4 ATPase, type IV s 39.6 33 0.0011 30.6 5.0 47 193-239 261-311 (392)
290 3ice_A Transcription terminati 39.5 8.8 0.0003 35.8 1.0 25 64-88 166-196 (422)
291 1c1y_A RAS-related protein RAP 39.3 11 0.00037 28.4 1.4 11 77-87 14-24 (167)
292 2ged_A SR-beta, signal recogni 39.2 11 0.00038 29.4 1.5 12 77-88 59-70 (193)
293 3clv_A RAB5 protein, putative; 39.0 11 0.00039 29.2 1.5 11 77-87 18-28 (208)
294 1ek0_A Protein (GTP-binding pr 38.8 12 0.0004 28.3 1.5 10 77-86 14-23 (170)
295 3q72_A GTP-binding protein RAD 38.7 12 0.0004 28.3 1.5 11 77-87 13-23 (166)
296 1svi_A GTP-binding protein YSX 38.7 12 0.00042 29.2 1.7 11 77-87 34-44 (195)
297 1gtv_A TMK, thymidylate kinase 38.7 11 0.00038 30.2 1.4 11 77-87 11-21 (214)
298 1g16_A RAS-related protein SEC 38.6 12 0.00042 28.2 1.6 11 77-87 14-24 (170)
299 3a10_A Response regulator; pho 38.6 89 0.003 21.4 6.3 41 193-236 44-84 (116)
300 3cu5_A Two component transcrip 38.6 78 0.0027 23.0 6.3 40 193-235 48-87 (141)
301 3t34_A Dynamin-related protein 38.5 28 0.00097 30.8 4.3 26 63-88 28-56 (360)
302 3gee_A MNME, tRNA modification 38.5 44 0.0015 31.3 5.7 20 203-222 376-395 (476)
303 1z0j_A RAB-22, RAS-related pro 38.5 12 0.0004 28.3 1.5 11 77-87 17-27 (170)
304 3f2i_A ALR0221 protein; alpha- 38.4 37 0.0013 27.1 4.6 49 194-245 71-122 (172)
305 3pqc_A Probable GTP-binding pr 38.3 12 0.00043 28.9 1.7 11 77-87 34-44 (195)
306 2yv5_A YJEQ protein; hydrolase 38.3 2.4 8.2E-05 37.3 -2.9 29 68-97 161-197 (302)
307 1z0f_A RAB14, member RAS oncog 38.2 12 0.00041 28.5 1.5 11 77-87 26-36 (179)
308 1nn5_A Similar to deoxythymidy 38.1 13 0.00045 29.7 1.8 18 70-87 7-30 (215)
309 1jwy_B Dynamin A GTPase domain 38.1 12 0.00041 32.2 1.7 12 77-88 35-46 (315)
310 3tw8_B RAS-related protein RAB 38.1 12 0.00039 28.7 1.4 11 77-87 20-30 (181)
311 2wwf_A Thymidilate kinase, put 38.0 13 0.00044 29.7 1.8 18 70-87 8-31 (212)
312 2jaq_A Deoxyguanosine kinase; 38.0 12 0.0004 29.6 1.5 12 77-88 11-22 (205)
313 1z08_A RAS-related protein RAB 37.6 12 0.00042 28.2 1.5 11 77-87 17-27 (170)
314 3eod_A Protein HNR; response r 37.5 68 0.0023 22.7 5.7 42 192-236 49-90 (130)
315 4dhe_A Probable GTP-binding pr 37.5 12 0.00042 30.0 1.5 11 77-87 40-50 (223)
316 2nzj_A GTP-binding protein REM 37.4 12 0.00042 28.4 1.4 11 77-87 15-25 (175)
317 3lua_A Response regulator rece 37.3 74 0.0025 22.9 5.9 41 193-236 49-92 (140)
318 3jte_A Response regulator rece 37.3 1.1E+02 0.0036 22.0 6.8 41 193-236 48-88 (143)
319 3cz5_A Two-component response 37.2 95 0.0033 22.7 6.7 41 193-236 50-90 (153)
320 3q85_A GTP-binding protein REM 37.0 12 0.00042 28.3 1.4 11 77-87 13-23 (169)
321 4dsu_A GTPase KRAS, isoform 2B 36.8 13 0.00044 28.7 1.5 11 77-87 15-25 (189)
322 2rhm_A Putative kinase; P-loop 36.8 13 0.00044 29.2 1.5 11 77-87 16-26 (193)
323 1wms_A RAB-9, RAB9, RAS-relate 36.8 12 0.00043 28.5 1.4 11 77-87 18-28 (177)
324 1vec_A ATP-dependent RNA helic 36.7 19 0.00064 28.6 2.5 41 193-233 145-185 (206)
325 2zr9_A Protein RECA, recombina 36.7 15 0.00053 32.9 2.2 20 67-86 56-81 (349)
326 2qz4_A Paraplegin; AAA+, SPG7, 36.6 52 0.0018 26.9 5.4 15 192-206 96-110 (262)
327 1srr_A SPO0F, sporulation resp 36.4 79 0.0027 22.1 5.8 41 193-236 46-86 (124)
328 1r2q_A RAS-related protein RAB 36.3 13 0.00046 27.9 1.5 11 77-87 17-27 (170)
329 1ky3_A GTP-binding protein YPT 36.3 13 0.00046 28.3 1.5 11 77-87 19-29 (182)
330 2dyk_A GTP-binding protein; GT 36.3 13 0.00046 27.7 1.5 11 77-87 12-22 (161)
331 3i42_A Response regulator rece 36.2 78 0.0027 22.2 5.8 40 193-235 46-87 (127)
332 1vht_A Dephospho-COA kinase; s 36.2 14 0.00049 29.9 1.8 12 77-88 15-26 (218)
333 3hv2_A Response regulator/HD d 36.2 73 0.0025 23.4 5.8 41 193-236 57-97 (153)
334 3lw7_A Adenylate kinase relate 36.1 13 0.00044 28.2 1.4 10 77-86 12-21 (179)
335 3eul_A Possible nitrate/nitrit 35.9 73 0.0025 23.4 5.7 41 193-236 60-100 (152)
336 2cxx_A Probable GTP-binding pr 35.9 14 0.00048 28.6 1.6 19 203-221 162-180 (190)
337 3bc1_A RAS-related protein RAB 35.8 14 0.00047 28.6 1.5 11 77-87 22-32 (195)
338 2zjr_C 50S ribosomal protein L 35.7 19 0.00065 30.2 2.4 74 171-248 93-168 (205)
339 2lkc_A Translation initiation 35.7 14 0.00048 28.2 1.5 11 77-87 19-29 (178)
340 3b2n_A Uncharacterized protein 35.6 77 0.0026 22.7 5.7 41 193-236 48-88 (133)
341 1q3t_A Cytidylate kinase; nucl 35.6 15 0.00052 30.3 1.8 20 69-88 13-38 (236)
342 1tmy_A CHEY protein, TMY; chem 35.4 59 0.002 22.6 5.0 41 193-236 46-86 (120)
343 3k53_A Ferrous iron transport 35.3 14 0.00049 31.3 1.7 21 203-223 144-164 (271)
344 2y8e_A RAB-protein 6, GH09086P 35.3 14 0.00049 28.1 1.5 11 77-87 25-35 (179)
345 2g6b_A RAS-related protein RAB 35.3 14 0.00048 28.3 1.5 10 77-86 21-30 (180)
346 1f2t_A RAD50 ABC-ATPase; DNA d 35.3 16 0.00056 28.3 1.9 11 77-87 34-44 (149)
347 1moz_A ARL1, ADP-ribosylation 35.2 14 0.00048 28.4 1.5 11 77-87 29-39 (183)
348 2gf0_A GTP-binding protein DI- 35.1 15 0.00051 28.7 1.6 21 203-223 149-169 (199)
349 1upt_A ARL1, ADP-ribosylation 35.0 14 0.00047 28.0 1.4 10 77-86 18-27 (171)
350 3con_A GTPase NRAS; structural 34.8 14 0.00049 28.7 1.5 11 77-87 32-42 (190)
351 1kht_A Adenylate kinase; phosp 34.8 16 0.00054 28.5 1.7 12 77-88 14-25 (192)
352 2orw_A Thymidine kinase; TMTK, 34.8 43 0.0015 26.8 4.5 50 194-248 76-137 (184)
353 2kpt_A Putative secreted prote 34.6 59 0.002 25.4 5.1 64 198-262 16-86 (148)
354 2oil_A CATX-8, RAS-related pro 34.6 14 0.00049 28.8 1.5 11 77-87 36-46 (193)
355 2hxs_A RAB-26, RAS-related pro 34.6 15 0.00052 28.0 1.6 11 77-87 17-27 (178)
356 1qhx_A CPT, protein (chloramph 34.3 15 0.0005 28.5 1.5 12 77-88 14-25 (178)
357 2plr_A DTMP kinase, probable t 34.3 16 0.00055 29.0 1.8 11 77-87 15-25 (213)
358 2a9k_A RAS-related protein RAL 34.1 15 0.0005 28.2 1.4 11 77-87 29-39 (187)
359 3t1o_A Gliding protein MGLA; G 33.9 15 0.00052 28.4 1.5 11 77-87 25-35 (198)
360 2bme_A RAB4A, RAS-related prot 33.9 16 0.00053 28.2 1.5 10 77-86 21-30 (186)
361 2aka_B Dynamin-1; fusion prote 33.7 16 0.00053 31.1 1.6 12 77-88 37-48 (299)
362 2efe_B Small GTP-binding prote 33.6 15 0.00051 28.1 1.4 11 77-87 23-33 (181)
363 3oes_A GTPase rhebl1; small GT 33.5 16 0.00056 28.9 1.6 19 203-221 165-183 (201)
364 1np6_A Molybdopterin-guanine d 33.4 15 0.00051 29.6 1.4 11 77-87 17-27 (174)
365 2qv0_A Protein MRKE; structura 33.0 90 0.0031 22.4 5.8 41 193-236 54-94 (143)
366 2h17_A ADP-ribosylation factor 33.0 17 0.00058 28.2 1.7 11 77-87 32-42 (181)
367 1mvo_A PHOP response regulator 32.9 93 0.0032 22.1 5.8 40 193-235 46-85 (136)
368 3iby_A Ferrous iron transport 32.8 17 0.00057 30.9 1.7 12 77-88 12-23 (256)
369 3t5g_A GTP-binding protein RHE 32.8 17 0.00057 28.0 1.5 11 77-87 17-27 (181)
370 3kkq_A RAS-related protein M-R 32.7 16 0.00054 28.2 1.4 11 77-87 29-39 (183)
371 2qtf_A Protein HFLX, GTP-bindi 32.7 15 0.00052 33.2 1.4 12 77-88 190-201 (364)
372 1qkk_A DCTD, C4-dicarboxylate 32.6 96 0.0033 22.7 6.0 41 193-236 46-86 (155)
373 3dz8_A RAS-related protein RAB 32.4 18 0.0006 28.4 1.6 10 77-86 34-43 (191)
374 1sxj_C Activator 1 40 kDa subu 32.2 45 0.0016 29.0 4.5 41 194-235 110-150 (340)
375 3tkl_A RAS-related protein RAB 32.2 16 0.00056 28.4 1.4 11 77-87 27-37 (196)
376 2bov_A RAla, RAS-related prote 32.2 16 0.00055 28.7 1.4 10 77-86 25-34 (206)
377 4b4t_I 26S protease regulatory 32.1 59 0.002 30.4 5.4 51 189-239 270-335 (437)
378 3twe_A Alpha4H; unknown functi 32.0 44 0.0015 18.2 2.7 20 2-21 2-21 (27)
379 1fzq_A ADP-ribosylation factor 31.9 17 0.0006 28.3 1.5 11 77-87 27-37 (181)
380 3grc_A Sensor protein, kinase; 31.9 90 0.0031 22.3 5.6 41 193-236 49-91 (140)
381 1ly1_A Polynucleotide kinase; 31.9 17 0.00058 28.0 1.5 12 77-88 13-24 (181)
382 3iev_A GTP-binding protein ERA 31.7 18 0.00061 31.6 1.7 11 77-87 21-31 (308)
383 1vg8_A RAS-related protein RAB 31.7 17 0.00059 28.6 1.5 19 203-221 153-171 (207)
384 1r8s_A ADP-ribosylation factor 31.4 17 0.00059 27.2 1.4 10 77-86 11-20 (164)
385 2gf9_A RAS-related protein RAB 31.4 18 0.00061 28.2 1.5 11 77-87 33-43 (189)
386 1nks_A Adenylate kinase; therm 31.4 18 0.00063 28.1 1.6 11 77-87 12-22 (194)
387 2pl1_A Transcriptional regulat 31.3 1.3E+02 0.0044 20.7 6.5 41 193-236 43-83 (121)
388 2fg5_A RAB-22B, RAS-related pr 31.2 19 0.00064 28.3 1.6 11 77-87 34-44 (192)
389 3cnb_A DNA-binding response re 31.2 1.2E+02 0.0042 21.5 6.2 41 193-236 53-95 (143)
390 3d8b_A Fidgetin-like protein 1 31.0 55 0.0019 28.9 4.9 15 191-205 173-187 (357)
391 1zbd_A Rabphilin-3A; G protein 30.9 18 0.00062 28.5 1.5 10 77-86 19-28 (203)
392 1zj6_A ADP-ribosylation factor 30.8 19 0.00064 28.0 1.5 11 77-87 27-37 (187)
393 1wf3_A GTP-binding protein; GT 30.7 18 0.00061 31.6 1.5 20 203-222 151-170 (301)
394 2h57_A ADP-ribosylation factor 30.6 18 0.00063 28.2 1.5 11 77-87 32-42 (190)
395 3ilh_A Two component response 30.6 1.1E+02 0.0039 21.7 6.0 40 193-235 59-102 (146)
396 4fcw_A Chaperone protein CLPB; 30.6 52 0.0018 27.8 4.5 29 193-222 118-146 (311)
397 3kl4_A SRP54, signal recogniti 30.5 1E+02 0.0035 28.5 6.7 35 4-40 22-57 (433)
398 2qr3_A Two-component system re 30.3 97 0.0033 22.0 5.5 41 193-236 46-91 (140)
399 2z0h_A DTMP kinase, thymidylat 30.3 18 0.00062 28.4 1.4 11 77-87 11-21 (197)
400 3lxw_A GTPase IMAP family memb 30.3 18 0.00063 30.3 1.5 12 77-88 32-43 (247)
401 2o52_A RAS-related protein RAB 30.2 19 0.00066 28.5 1.5 10 77-86 36-45 (200)
402 1ksh_A ARF-like protein 2; sma 30.2 19 0.00065 27.8 1.5 11 77-87 29-39 (186)
403 3t5d_A Septin-7; GTP-binding p 30.1 19 0.00064 30.6 1.5 10 77-86 19-28 (274)
404 1z06_A RAS-related protein RAB 30.1 19 0.00063 28.1 1.4 10 77-86 31-40 (189)
405 1mky_A Probable GTP-binding pr 30.1 18 0.00062 33.2 1.5 27 193-223 327-353 (439)
406 1zd9_A ADP-ribosylation factor 30.0 19 0.00066 28.1 1.5 11 77-87 33-43 (188)
407 2pbr_A DTMP kinase, thymidylat 30.0 19 0.00063 28.2 1.4 11 77-87 11-21 (195)
408 1m7b_A RND3/RHOE small GTP-bin 29.9 21 0.0007 27.8 1.6 11 77-87 18-28 (184)
409 4hbz_A Putative phosphohistidi 29.9 49 0.0017 26.7 4.0 49 193-245 83-132 (186)
410 3iij_A Coilin-interacting nucl 29.9 16 0.00056 28.5 1.0 11 77-87 22-32 (180)
411 3hr8_A Protein RECA; alpha and 29.8 1.9E+02 0.0066 25.8 8.4 53 180-234 127-197 (356)
412 3i8s_A Ferrous iron transport 29.8 20 0.00068 30.6 1.7 11 77-87 14-24 (274)
413 3pxi_A Negative regulator of g 29.8 74 0.0025 31.2 6.0 28 193-221 578-605 (758)
414 1mh1_A RAC1; GTP-binding, GTPa 29.8 19 0.00065 27.6 1.4 10 77-86 16-25 (186)
415 2a5j_A RAS-related protein RAB 29.7 19 0.00066 28.1 1.5 11 77-87 32-42 (191)
416 2bcg_Y Protein YP2, GTP-bindin 29.6 21 0.00071 28.3 1.6 19 203-221 149-167 (206)
417 3cg4_A Response regulator rece 29.6 1.2E+02 0.0041 21.6 6.0 40 193-235 50-91 (142)
418 2iwr_A Centaurin gamma 1; ANK 29.6 20 0.0007 27.4 1.6 11 77-87 18-28 (178)
419 1zgz_A Torcad operon transcrip 29.6 1.4E+02 0.0047 20.6 6.3 40 193-236 45-84 (122)
420 2ocp_A DGK, deoxyguanosine kin 29.6 21 0.00071 29.5 1.7 11 77-87 13-23 (241)
421 3bwd_D RAC-like GTP-binding pr 29.5 19 0.00066 27.5 1.4 11 77-87 19-29 (182)
422 2fv8_A H6, RHO-related GTP-bin 29.5 21 0.00071 28.5 1.6 11 77-87 36-46 (207)
423 2il1_A RAB12; G-protein, GDP, 29.4 19 0.00066 28.3 1.4 11 77-87 37-47 (192)
424 2ius_A DNA translocase FTSK; n 29.4 18 0.00062 34.5 1.4 23 64-86 159-187 (512)
425 4a9a_A Ribosome-interacting GT 29.4 18 0.00061 33.1 1.3 16 5-20 10-25 (376)
426 2wsm_A Hydrogenase expression/ 29.3 21 0.00071 28.7 1.6 10 77-86 41-50 (221)
427 4bas_A ADP-ribosylation factor 29.3 19 0.00066 28.0 1.4 10 77-86 28-37 (199)
428 3crn_A Response regulator rece 29.2 1.1E+02 0.0039 21.7 5.7 40 193-235 46-85 (132)
429 2chq_A Replication factor C sm 29.1 16 0.00054 31.0 0.9 43 193-236 101-143 (319)
430 2xtp_A GTPase IMAP family memb 29.1 21 0.00072 29.7 1.6 11 77-87 33-43 (260)
431 3r8s_E 50S ribosomal protein L 29.1 52 0.0018 27.4 4.0 74 170-248 93-168 (201)
432 1x3s_A RAS-related protein RAB 29.0 20 0.00068 27.8 1.4 10 77-86 26-35 (195)
433 3b1v_A Ferrous iron uptake tra 29.0 19 0.00066 30.9 1.4 12 77-88 14-25 (272)
434 3hdg_A Uncharacterized protein 28.9 77 0.0026 22.6 4.7 41 193-236 50-90 (137)
435 1v5w_A DMC1, meiotic recombina 28.8 22 0.00077 31.5 1.9 19 68-86 118-142 (343)
436 1uf9_A TT1252 protein; P-loop, 28.7 22 0.00074 28.1 1.6 12 77-88 19-30 (203)
437 2atv_A RERG, RAS-like estrogen 28.7 21 0.00072 28.0 1.5 11 77-87 39-49 (196)
438 3iuy_A Probable ATP-dependent 28.6 16 0.00054 29.7 0.8 52 193-244 166-219 (228)
439 2f7s_A C25KG, RAS-related prot 28.5 20 0.00068 28.6 1.4 11 77-87 36-46 (217)
440 3reg_A RHO-like small GTPase; 28.4 21 0.00073 27.9 1.5 11 77-87 34-44 (194)
441 3cph_A RAS-related protein SEC 28.4 21 0.00073 28.2 1.5 11 77-87 31-41 (213)
442 1jql_B DNA polymerase III, del 28.4 85 0.0029 23.7 5.0 42 191-233 73-114 (140)
443 3qks_A DNA double-strand break 28.4 24 0.00083 28.7 1.9 10 77-86 34-43 (203)
444 2jk1_A HUPR, hydrogenase trans 28.4 1.1E+02 0.0039 21.8 5.6 40 193-235 43-82 (139)
445 3ihw_A Centg3; RAS, centaurin, 28.3 21 0.00073 27.9 1.5 10 77-86 31-40 (184)
446 2x77_A ADP-ribosylation factor 28.3 21 0.00073 27.7 1.5 10 77-86 33-42 (189)
447 1hqc_A RUVB; extended AAA-ATPa 28.2 1E+02 0.0034 26.1 6.0 29 193-222 89-117 (324)
448 3geh_A MNME, tRNA modification 28.2 74 0.0025 29.6 5.4 11 77-87 235-245 (462)
449 1via_A Shikimate kinase; struc 28.1 21 0.00073 27.7 1.5 11 77-87 15-25 (175)
450 2c95_A Adenylate kinase 1; tra 28.1 19 0.00067 28.2 1.2 11 77-87 20-30 (196)
451 2j48_A Two-component sensor ki 28.1 1E+02 0.0034 20.8 5.1 40 193-235 44-85 (119)
452 3cbq_A GTP-binding protein REM 28.1 20 0.0007 28.4 1.3 11 77-87 34-44 (195)
453 2i1q_A DNA repair and recombin 28.0 1.9E+02 0.0063 24.8 7.8 19 68-86 94-118 (322)
454 1tev_A UMP-CMP kinase; ploop, 28.0 24 0.00081 27.4 1.7 11 77-87 14-24 (196)
455 3kht_A Response regulator; PSI 27.9 1E+02 0.0034 22.3 5.2 41 192-235 49-91 (144)
456 2gco_A H9, RHO-related GTP-bin 27.9 23 0.00079 28.0 1.6 11 77-87 36-46 (201)
457 2qvg_A Two component response 27.6 1.5E+02 0.0051 21.1 6.2 41 193-236 58-100 (143)
458 1p5z_B DCK, deoxycytidine kina 27.6 22 0.00075 29.9 1.5 18 70-87 22-45 (263)
459 2p5s_A RAS and EF-hand domain 27.4 22 0.00077 28.0 1.5 11 77-87 39-49 (199)
460 1nrj_B SR-beta, signal recogni 27.3 23 0.00078 28.3 1.5 11 77-87 23-33 (218)
461 2ohf_A Protein OLA1, GTP-bindi 27.3 20 0.00068 33.0 1.2 12 77-88 33-44 (396)
462 4djt_A GTP-binding nuclear pro 27.1 16 0.00056 29.2 0.6 11 77-87 22-32 (218)
463 3nhm_A Response regulator; pro 27.1 1.5E+02 0.0053 20.7 6.1 40 193-235 46-87 (133)
464 1kgs_A DRRD, DNA binding respo 27.0 1.4E+02 0.0047 23.5 6.3 41 193-236 45-85 (225)
465 2ew1_A RAS-related protein RAB 26.9 24 0.00081 28.3 1.5 10 77-86 37-46 (201)
466 1ujc_A Phosphohistidine phosph 26.9 1.9E+02 0.0064 22.1 6.9 31 213-243 86-118 (161)
467 1t6n_A Probable ATP-dependent 26.9 35 0.0012 27.3 2.6 53 193-245 157-212 (220)
468 1k68_A Phytochrome response re 26.9 1.6E+02 0.0054 20.6 6.2 40 193-235 54-95 (140)
469 1ojl_A Transcriptional regulat 26.8 1E+02 0.0034 26.6 5.8 40 195-235 97-147 (304)
470 2z43_A DNA repair and recombin 26.7 29 0.00098 30.4 2.2 20 67-86 102-127 (324)
471 2ce7_A Cell division protein F 26.5 32 0.0011 32.3 2.6 24 64-87 43-70 (476)
472 3llu_A RAS-related GTP-binding 26.5 25 0.00085 27.7 1.6 11 77-87 31-41 (196)
473 1gwn_A RHO-related GTP-binding 26.5 25 0.00087 28.2 1.6 11 77-87 39-49 (205)
474 2v1u_A Cell division control p 26.5 21 0.00073 31.0 1.3 44 193-236 129-178 (387)
475 2pt5_A Shikimate kinase, SK; a 26.4 23 0.00079 27.1 1.3 11 77-87 11-21 (168)
476 2qu8_A Putative nucleolar GTP- 26.4 24 0.00082 28.7 1.5 11 77-87 40-50 (228)
477 1e6c_A Shikimate kinase; phosp 26.3 24 0.00082 27.0 1.4 11 77-87 13-23 (173)
478 3kcn_A Adenylate cyclase homol 26.2 1.8E+02 0.006 21.1 6.4 41 193-236 47-87 (151)
479 2zay_A Response regulator rece 26.1 1.2E+02 0.004 21.9 5.4 41 193-236 51-93 (147)
480 3bor_A Human initiation factor 26.1 16 0.00056 30.1 0.4 53 193-245 172-226 (237)
481 2gxq_A Heat resistant RNA depe 26.1 14 0.00049 29.3 0.0 52 193-244 143-196 (207)
482 2q3h_A RAS homolog gene family 26.0 24 0.00082 27.7 1.4 11 77-87 31-41 (201)
483 3a1s_A Iron(II) transport prot 26.0 24 0.00084 29.8 1.5 12 77-88 16-27 (258)
484 2qgz_A Helicase loader, putati 26.0 35 0.0012 29.8 2.6 42 193-234 213-257 (308)
485 4b4t_H 26S protease regulatory 25.8 95 0.0033 29.2 5.7 52 187-238 295-361 (467)
486 3c5c_A RAS-like protein 12; GD 25.7 26 0.00087 27.4 1.5 10 77-86 32-41 (187)
487 2b4a_A BH3024; flavodoxin-like 25.6 1.2E+02 0.0043 21.5 5.4 39 193-234 59-98 (138)
488 1ys7_A Transcriptional regulat 25.6 1.6E+02 0.0054 23.2 6.5 40 193-235 50-89 (233)
489 1xjc_A MOBB protein homolog; s 25.6 23 0.00079 28.5 1.2 10 77-86 15-24 (169)
490 2b6h_A ADP-ribosylation factor 25.5 26 0.00089 27.6 1.5 10 77-86 40-49 (192)
491 2zts_A Putative uncharacterize 25.3 33 0.0011 27.8 2.2 57 193-249 134-207 (251)
492 3q5d_A Atlastin-1; G protein, 25.3 26 0.00089 32.8 1.6 21 203-223 285-305 (447)
493 2j1l_A RHO-related GTP-binding 25.2 27 0.00091 28.1 1.5 11 77-87 45-55 (214)
494 3trf_A Shikimate kinase, SK; a 25.2 26 0.0009 27.3 1.5 11 77-87 16-26 (185)
495 2bwj_A Adenylate kinase 5; pho 25.2 28 0.00094 27.3 1.6 11 77-87 23-33 (199)
496 2fu5_C RAS-related protein RAB 25.2 18 0.00061 27.9 0.4 10 77-86 19-28 (183)
497 2grj_A Dephospho-COA kinase; T 25.1 26 0.00089 28.5 1.5 12 77-88 23-34 (192)
498 3cfy_A Putative LUXO repressor 25.1 1.2E+02 0.0042 21.7 5.3 41 193-236 47-87 (137)
499 4dad_A Putative pilus assembly 25.0 91 0.0031 22.6 4.5 41 193-236 66-106 (146)
500 3def_A T7I23.11 protein; chlor 24.9 28 0.00095 29.3 1.7 11 77-87 47-57 (262)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.7e-36 Score=277.60 Aligned_cols=196 Identities=21% Similarity=0.238 Sum_probs=147.6
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhh
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESD 99 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~ 99 (264)
.+++++++.+.|..+.... ..+++|||+|++||+++ ||||||+++++++ ++.|.+.+.+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~-------------~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G 89 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTI-------------QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89 (366)
T ss_dssp CCEEEEEEEEEEECSSSEE-------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred ceEEEEeEEEEeCCCCCCe-------------EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 3567778888886332112 34567999999999998 9999999999775 4567787777
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCccc
Q psy17516 100 RAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLW 166 (264)
Q Consensus 100 ~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~ 166 (264)
.+ +..++......++ +.+++|||. +++..++ .....+..+.+..++..+|+.++.
T Consensus 90 ~~-----i~~~~~~~~~~~r-------~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~ 157 (366)
T 3tui_C 90 QE-----LTTLSESELTKAR-------RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH 157 (366)
T ss_dssp EE-----CSSCCHHHHHHHH-------TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred EE-----CCcCCHHHHHHHh-------CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh
Confidence 53 6556544444444 345555553 3333222 111112234567788899999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccc
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANV 243 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~ 243 (264)
+++|.+|||||||||+||||| +.+|+++||||||++||+.++..++++|+++++ +.++|+|||+...+ ..||+
T Consensus 158 ~~~~~~LSGGqkQRVaIArAL----~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDr 233 (366)
T 3tui_C 158 DSYPSNLSGGQKQRVAIARAL----ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDC 233 (366)
T ss_dssp TCCTTTSCHHHHHHHHHHHHT----TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred cCChhhCCHHHHHHHHHHHHH----hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 999999999999999998875 589999999999999999999999999999864 78999999998876 57999
Q ss_pred eeEEEeeCCeE
Q psy17516 244 IFRTKFVDGNS 254 (264)
Q Consensus 244 l~~v~~~~g~s 254 (264)
++- |.+|..
T Consensus 234 v~v--l~~G~i 242 (366)
T 3tui_C 234 VAV--ISNGEL 242 (366)
T ss_dssp EEE--EETTEE
T ss_pred EEE--EECCEE
Confidence 988 778865
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.2e-34 Score=254.99 Aligned_cols=185 Identities=19% Similarity=0.159 Sum_probs=132.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHH-HHHHhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALRE-AWLKVNTDF- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~-~~~~v~~~f- 129 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|++.+.+.+ +..++......+++ ....+.|+.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~-----~~~~~~~~~~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK-----TNDLDDDELTKIRRDKIGFVFQQFN 93 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE-----CTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEE-----cccCCHHHHHHHhhccEEEEecCCc
Confidence 35678999999999998 9999999999775 456777777753 54555443333332 111111211
Q ss_pred ---h-hHHHhhcCCCcC----CCCCCchhhHHHhHHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 130 ---G-SIFSLLLPGSQA----KLSPPAGKDILDGLEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 130 ---~-~vf~~L~~g~~~----~l~~~~~~~~~~~l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
. +|++++..+... .....+..+.+..++..+++.+. .++++.+|||||||||+||||+ +.+|+++||
T Consensus 94 l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral----~~~p~llll 169 (235)
T 3tif_A 94 LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL----ANNPPIILA 169 (235)
T ss_dssp CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH----TTCCSEEEE
T ss_pred cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH----HcCCCEEEE
Confidence 1 333332211100 01111112345667778899875 4899999999999999999876 578999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
||||++||+.++..+.++|+++++ +.++|+|||+...+++||+++- |++|...
T Consensus 170 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~--l~~G~i~ 224 (235)
T 3tif_A 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIY--LKDGEVE 224 (235)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEE--EETTEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE--EECCEEE
Confidence 999999999999999999999864 7899999999998899999988 7788753
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.4e-35 Score=256.72 Aligned_cols=184 Identities=20% Similarity=0.176 Sum_probs=131.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHH-HHHHHhhhhh-
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALR-EAWLKVNTDF- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~-~~~~~v~~~f- 129 (264)
.+++++||++++||+++ ||||||+++++++ ++.|.+.+.+.+ +...+......++ ..+..+.++.
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKE-----VDYTNEKELSLLRNRKLGFVFQFHY 92 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEE-----CCSSCHHHHHHHHHHHEEEECSSCC
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-----CCCCCHHHHHHHHhCcEEEEecCcc
Confidence 35678999999999997 9999999999775 346777776643 4333322222222 1111111111
Q ss_pred ----hhHHHhhcCCCc-CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 130 ----GSIFSLLLPGSQ-AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 130 ----~~vf~~L~~g~~-~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
-++++++..+.. .........+.+..++..+++.+..++++.+|||||||||+|||++ +.+|+++||||||
T Consensus 93 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral----~~~p~lllLDEPt 168 (224)
T 2pcj_A 93 LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL----ANEPILLFADEPT 168 (224)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT----TTCCSEEEEESTT
T ss_pred cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH----HcCCCEEEEeCCC
Confidence 023333211110 0111111223456778889999999999999999999999998875 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|+++.+ +.++|+|||+...+..||+++- |++|..
T Consensus 169 ~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~--l~~G~i 217 (224)
T 2pcj_A 169 GNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLE--MKDGKV 217 (224)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEE--EETTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999864 6899999999888888999987 678865
No 4
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=100.00 E-value=3e-33 Score=236.04 Aligned_cols=150 Identities=33% Similarity=0.579 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhhcCCCcCCCCCCchhh-HHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHH
Q psy17516 111 DEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKD-ILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAM 189 (264)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~f~~vf~~L~~g~~~~l~~~~~~~-~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~ 189 (264)
+.+++..|.++|..|+.+|+.+|+.|++|+++.+...++.+ ...|+...+.++++..+++..||||||||++||++||.
T Consensus 2 ~~~~~~~f~~~f~~i~~~f~~~f~~L~~~g~~~l~l~~~~~~~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~ 81 (173)
T 3kta_B 2 EKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAI 81 (173)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCSSSGGGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeeCCCCccccCceEEecCCCccccccccCCHHHHHHHHHHHHHHh
Confidence 34577889999999999999999999999988765444333 34677778888899999999999999999999999987
Q ss_pred hhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEEEEEee
Q psy17516 190 LLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTV 260 (264)
Q Consensus 190 ~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~i~~~~ 260 (264)
..++|||+|||||||++||+.++..+.++|+++.+++|+|+|||+..+++.||++|+++|++|+|+++++.
T Consensus 82 ~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~s~~~~~~ 152 (173)
T 3kta_B 82 QKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVSKVVSLS 152 (173)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTEEEEEECC
T ss_pred cccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCEEEEEEEE
Confidence 66789999999999999999999999999999888889999999999999999999999999999998764
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=9.2e-33 Score=248.70 Aligned_cols=183 Identities=22% Similarity=0.195 Sum_probs=131.1
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh----
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD---- 128 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---- 128 (264)
.++++||+|++||+++ ||||||+++++++ +++|.+.+.+.+ +. ........+++....+.|+
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~-----i~-~~~~~~~~~~~~ig~v~Q~~~~~ 96 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP-----ID-YSRKGIMKLRESIGIVFQDPDNQ 96 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE-----CC-CSHHHHHHHHHSEEEECSSGGGT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE-----CC-cccccHHHHhCcEEEEEcCcccc
Confidence 5677999999999998 9999999999775 456777777653 31 1111222333211111111
Q ss_pred -h-hhHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 129 -F-GSIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 129 -f-~~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
| .+|++++..+... .....+..+.+..++..+++.+..++++.+|||||||||+||||+ +.+|+++||||||+
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL----~~~P~lLlLDEPts 172 (275)
T 3gfo_A 97 LFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL----VMEPKVLILDEPTA 172 (275)
T ss_dssp CCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH----TTCCSEEEEECTTT
T ss_pred cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH----HcCCCEEEEECccc
Confidence 1 1334333211111 111111234567788899999999999999999999999999876 57899999999999
Q ss_pred CCCHHHHHHHHHHHHHhh-c-CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 206 ALDLSHTQNIGQMLKRHF-K-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~-~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
+||+.++..++++|+++. + +.++|+|||+...+ ..||+++- |.+|...
T Consensus 173 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~--l~~G~i~ 223 (275)
T 3gfo_A 173 GLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFV--MKEGRVI 223 (275)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEE--EETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEE--EECCEEE
Confidence 999999999999999986 4 78999999998877 57999988 7788653
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=7.1e-34 Score=264.59 Aligned_cols=177 Identities=20% Similarity=0.139 Sum_probs=129.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..++++||+|++||+++ |||||||++++++ +++|.+.+.++. +...+. ..... .+.+++
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~-----i~~~~~-~~~~~-------~r~ig~ 84 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKT-----IFSKNT-NLPVR-------ERRLGY 84 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEE-----EESSSC-BCCGG-------GSCCEE
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEE-----Cccccc-ccchh-------hCCEEE
Confidence 45667999999999998 9999999999875 456777777653 311000 00000 123444
Q ss_pred HHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
|||. ++|..++ .....+..+.+..++..+++.+..+++|.+||||||||||||||+ +.+|+++
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL----~~~P~lL 160 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL----APDPELI 160 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH----TTCCSEE
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH----HcCCCEE
Confidence 4543 3333221 111112234567788899999999999999999999999999876 5789999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
||||||++||+..+..+.+.|+++. .+.++|+||||...+ ..||+++- |.+|...
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~v--l~~G~i~ 218 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAV--MKQGRIL 218 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEE--EETTEEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEE--EECCEEE
Confidence 9999999999999999998777654 378999999997765 67999988 7788653
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=7.2e-34 Score=266.32 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=133.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..++++||+|++||+++ |||||||++++++ ++.|.+.+.++. +...... .+.+++
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~-----~~~~~~~------------~r~ig~ 79 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR-----MNDTPPA------------ERGVGM 79 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE-----CTTCCGG------------GSCEEE
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEE-----CCCCCHH------------HCCEEE
Confidence 35667999999999998 9999999999876 446777776653 4333321 123556
Q ss_pred HHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
|||. ++|..++. ....+..+.+..++..+++.+..+++|.+||||||||||||||++ .+|+++
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~----~~P~lL 155 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV----AEPSVF 155 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH----HCCSEE
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH----cCCCEE
Confidence 6664 44443321 111112345677888999999999999999999999999999876 588999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s~ 255 (264)
||||||++||+..+..+.++|+++.+ +.++|+||||... +..||+++- |.+|...
T Consensus 156 LLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~v--l~~G~i~ 213 (381)
T 3rlf_A 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV--LDAGRVA 213 (381)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEE--EETTEEE
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999999999864 7899999999765 478999988 7798763
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=2.5e-32 Score=243.15 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=131.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +...+.. ..++.....+.++
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~~~~~--~~~~~~i~~v~q~~~l 93 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD-----ITNKEPA--ELYHYGIVRTFQTPQP 93 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE-----CTTCCHH--HHHHHTEEECCCCCGG
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-----CCCCCHH--HHHhCCEEEEccCCcc
Confidence 35678999999999998 9999999999775 346777776642 3333211 1122111112222
Q ss_pred h--hhHHHhhcCCCcC---C-----------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhc
Q psy17516 129 F--GSIFSLLLPGSQA---K-----------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLF 192 (264)
Q Consensus 129 f--~~vf~~L~~g~~~---~-----------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~ 192 (264)
| -+|++++..+... . .........+..++..+|+.+..++++.+|||||||||+|||+++
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~---- 169 (257)
T 1g6h_A 94 LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM---- 169 (257)
T ss_dssp GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH----
T ss_pred CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHH----
Confidence 1 1455554322111 1 011112234567788899999999999999999999999998875
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
.+|+++||||||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++- |.+|..
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~--l~~G~i 231 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYV--MFNGQI 231 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEE--EETTEE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 78899999999999999999999999999865 68899999998876 58999988 678865
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=1.6e-32 Score=245.92 Aligned_cols=182 Identities=21% Similarity=0.198 Sum_probs=133.2
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+.+++++||+|++||+++ ||||||+++++++ +++|.+.+.+.+ +...+... +++....+.+.
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~-----~~~~~~~~---~~~~i~~v~q~~~ 95 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN-----LNSWQPKA---LARTRAVMRQYSE 95 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE-----TTTSCHHH---HHHHEEEECSCCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE-----CCcCCHHH---HhheEEEEecCCc
Confidence 345678999999999998 9999999999775 446777777653 44444322 12111111111
Q ss_pred --h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcC------CCCEEE
Q psy17516 129 --F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFK------PAPLYI 199 (264)
Q Consensus 129 --f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~------~~~ill 199 (264)
+ .+|++++..+.... ......+.+..++..+++.+..++++.+|||||||||+|||+++ + +|+++|
T Consensus 96 ~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~----~~~~~~~~p~lLl 170 (266)
T 4g1u_C 96 LAFPFSVSEVIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA----QLWQPQPTPRWLF 170 (266)
T ss_dssp CCSCCBHHHHHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH----HTCCSSCCCEEEE
T ss_pred cCCCCCHHHHHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh----cccccCCCCCEEE
Confidence 1 14455443322111 12223345677788899999999999999999999999999875 4 789999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc-C-CeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK-T-SQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~-~-~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|||||+|||+.++..+.++|+++++ + .++|+||||...+ ..||+++- |.+|...
T Consensus 171 lDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~v--l~~G~i~ 227 (266)
T 4g1u_C 171 LDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIML--LAQGKLV 227 (266)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEE--EETTEEE
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999999864 3 5899999998876 47999988 6788653
No 10
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1.1e-32 Score=246.21 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=130.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHH----------hhhHHHHHHHHHH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIE----------ELDEKKKIALREA 121 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~----------~l~~~~~~~~~~~ 121 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +. .++......+++.
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN-----INLVRDKDGQLKVADKNQLRLLRTR 94 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE-----CCEEECTTSSEEESCHHHHHHHHHH
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-----ccccccccccccccChhhHHHHhcc
Confidence 35678999999999998 9999999999775 346777776642 32 0222222223321
Q ss_pred HHHhhhhh----h-hHHHhhcCCC-c-CCCCCCchhhHHHhHHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcC
Q psy17516 122 WLKVNTDF----G-SIFSLLLPGS-Q-AKLSPPAGKDILDGLEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFK 193 (264)
Q Consensus 122 ~~~v~~~f----~-~vf~~L~~g~-~-~~l~~~~~~~~~~~l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~ 193 (264)
+..+.++. . +|++++..+. . .........+.+..++..+|+.+. .++++.+|||||||||+||||++ .
T Consensus 95 i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~----~ 170 (262)
T 1b0u_A 95 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA----M 170 (262)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHH----T
T ss_pred eEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHh----c
Confidence 11122211 0 3333322110 0 011111112345677888999988 89999999999999999998875 7
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- |.+|..
T Consensus 171 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~--l~~G~i 231 (262)
T 1b0u_A 171 EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF--LHQGKI 231 (262)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEE--EETTEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 8999999999999999999999999999864 67899999998876 57999987 678865
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=3.7e-33 Score=248.80 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHH
Q psy17516 26 KKAQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVE 97 (264)
Q Consensus 26 ~~a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~ 97 (264)
.+++.+++++.++|.. +.+++++||+|++||+++ ||||||+++++++ ++.|.+.+
T Consensus 12 ~~~~l~i~~l~~~y~~-----------------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 74 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK-----------------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74 (256)
T ss_dssp --CCEEEEEEEEEETT-----------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCeEEEEEEEEEECC-----------------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3455566677777751 345678999999999997 9999999999776 44677777
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCc
Q psy17516 98 SDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGG 164 (264)
Q Consensus 98 ~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~ 164 (264)
.+.. +.. . ...++ +.++++||. ++++.++ .....+..+.+..++..+++.+
T Consensus 75 ~g~~-----~~~-~---~~~~~-------~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 138 (256)
T 1vpl_A 75 FGKN-----VVE-E---PHEVR-------KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE 138 (256)
T ss_dssp TTEE-----TTT-C---HHHHH-------TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG
T ss_pred CCEE-----CCc-c---HHHHh-------hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCch
Confidence 6642 222 1 11122 233444442 2222111 0111111234566778889999
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hcc
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NAN 242 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad 242 (264)
..++++.+|||||||||+|||++ +.+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+. .||
T Consensus 139 ~~~~~~~~LSgGq~qRv~lAraL----~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d 214 (256)
T 1vpl_A 139 KIKDRVSTYSKGMVRKLLIARAL----MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD 214 (256)
T ss_dssp GGGSBGGGCCHHHHHHHHHHHHH----TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS
T ss_pred HhcCChhhCCHHHHHHHHHHHHH----HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCC
Confidence 99999999999999999999876 578999999999999999999999999999864 688999999988775 599
Q ss_pred ceeEEEeeCCeE
Q psy17516 243 VIFRTKFVDGNS 254 (264)
Q Consensus 243 ~l~~v~~~~g~s 254 (264)
+++- |++|..
T Consensus 215 ~v~~--l~~G~i 224 (256)
T 1vpl_A 215 RIAL--IHNGTI 224 (256)
T ss_dssp EEEE--EETTEE
T ss_pred EEEE--EECCEE
Confidence 9987 678865
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=1e-32 Score=246.94 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=138.3
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+++++++.++|.. +.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.
T Consensus 24 ~l~i~~l~~~y~~-----------------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 86 (263)
T 2olj_A 24 MIDVHQLKKSFGS-----------------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGI 86 (263)
T ss_dssp SEEEEEEEEEETT-----------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred eEEEEeEEEEECC-----------------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCE
Confidence 4567777777751 235678999999999998 9999999999775 34677777764
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhh----h-hHHHhhcCCC--cCCCCCCchhhHHHhHHHHcCCCcccccccCCC
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDF----G-SIFSLLLPGS--QAKLSPPAGKDILDGLEVNVAFGGLWKESLGEL 173 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f----~-~vf~~L~~g~--~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~L 173 (264)
+ +. .+......+++....+.++. . +|++++..+. ..........+.+..++..+++.+..++++.+|
T Consensus 87 ~-----i~-~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 160 (263)
T 2olj_A 87 N-----LK-AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSL 160 (263)
T ss_dssp E-----SS-STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred E-----CC-CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhC
Confidence 2 32 11111112222111122211 1 3444332111 001111111234567788899999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh-hccceeEEEeeC
Q psy17516 174 SGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS-NANVIFRTKFVD 251 (264)
Q Consensus 174 SGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~-~ad~l~~v~~~~ 251 (264)
||||||||+|||+| +.+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+. .||+++- |.+
T Consensus 161 SgGqkQRv~lAraL----~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~--l~~ 234 (263)
T 2olj_A 161 SGGQAQRVAIARAL----AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLF--MDG 234 (263)
T ss_dssp CHHHHHHHHHHHHH----TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE--EET
T ss_pred CHHHHHHHHHHHHH----HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEE--EEC
Confidence 99999999999876 578999999999999999999999999999864 678999999988764 7999988 678
Q ss_pred CeE
Q psy17516 252 GNS 254 (264)
Q Consensus 252 g~s 254 (264)
|..
T Consensus 235 G~i 237 (263)
T 2olj_A 235 GYI 237 (263)
T ss_dssp TEE
T ss_pred CEE
Confidence 865
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=4e-32 Score=239.56 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=129.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +...+... ..+..+..+.++
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~~--~~~~~i~~v~q~~~l 92 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD-----ITNKPAHV--INRMGIALVPEGRRI 92 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE-----CTTCCHHH--HHHTTEEEECSSCCC
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-----CCCCCHHH--HHhCCEEEEecCCcc
Confidence 35678999999999998 9999999999776 456777777643 33333211 111101111111
Q ss_pred h-h-hHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-CCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 129 F-G-SIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 129 f-~-~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
| . ++.+++..+...........+.+..++..++ +.+..++++.+|||||||||+|||++ +.+|+++||||||+
T Consensus 93 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL----~~~p~lllLDEPts 168 (240)
T 1ji0_A 93 FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL----MSRPKLLMMDEPSL 168 (240)
T ss_dssp CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH----TTCCSEEEEECTTT
T ss_pred CCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH----HcCCCEEEEcCCcc
Confidence 1 1 3444432221111111122234566777784 88888999999999999999999876 57999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcch-HhhccceeEEEeeCCeE
Q psy17516 206 ALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGM-FSNANVIFRTKFVDGNS 254 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s 254 (264)
+||+.++..+.++|+++. ++.++|+|||+... ...||+++- |++|..
T Consensus 169 ~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~--l~~G~i 217 (240)
T 1ji0_A 169 GLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYV--LETGQI 217 (240)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEE--EETTEE
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999986 47889999999865 478999988 678865
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=3.5e-33 Score=260.07 Aligned_cols=173 Identities=21% Similarity=0.199 Sum_probs=131.1
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..++++||+|++||+++ |||||||++++++ +++|.+.+.+.. +..+... .+.+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~-----i~~~~~~------------~r~ig~ 79 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVL-----VNDIPPK------------YREVGM 79 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE-----CTTSCGG------------GTTEEE
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEE-----CCCCChh------------hCcEEE
Confidence 35667999999999998 9999999999876 346777777643 3333211 123455
Q ss_pred HHHh--hcCCCcCC--------CC-C--CchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL--LLPGSQAK--------LS-P--PAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~--L~~g~~~~--------l~-~--~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
|||. +++..++. .. . .+..+.+..++..+++.+..+++|.+||||||||||||||+ +.+|+++
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL----~~~P~lL 155 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL----VKQPKVL 155 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH----TTCCSEE
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH----HcCCCEE
Confidence 5553 33332210 10 1 11123567788899999999999999999999999999876 5789999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
||||||++||+..+..+.++|+++.+ +.++|+||||...+ ..||+++- |.+|...
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v--l~~G~i~ 213 (359)
T 2yyz_A 156 LFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV--FNQGKLV 213 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE--EETTEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999999998864 78999999997765 78999987 7788653
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=9e-32 Score=250.18 Aligned_cols=173 Identities=19% Similarity=0.211 Sum_probs=131.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
..++++||+|++||+++ |||||||++++++ +++|.+.+++.. +..+... .+.+++
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~-----i~~~~~~------------~r~ig~ 91 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKR-----VTDLPPQ------------KRNVGL 91 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE-----CTTCCGG------------GSSEEE
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEE-----CCcCChh------------hCcEEE
Confidence 35667999999999998 9999999999876 346777776643 3322211 133555
Q ss_pred HHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 132 IFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 132 vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
|||. +++..++. ....+..+.+..++..+++.+..+++|.+||||||||||||||+ +.+|+++
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL----~~~P~lL 167 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL----APRPQVL 167 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH----TTCCSEE
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH----HcCCCEE
Confidence 5654 34433321 11111224567788899999999999999999999999999876 5789999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
||||||++||+..+..+.++|+++.+ +.++|+||||...+ ..||+++- |.+|...
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v--l~~G~i~ 225 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLV--LHEGNVE 225 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE--EETTEEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999999998864 78999999997765 67999987 7788753
No 16
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=2.1e-31 Score=236.04 Aligned_cols=176 Identities=20% Similarity=0.184 Sum_probs=124.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +..++.. .++..+..+.+.
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~-----~~~~~~~---~~~~~i~~v~Q~~~l 94 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD-----LALADPN---WLRRQVGVVLQDNVL 94 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE-----TTTSCHH---HHHHHEEEECSSCCC
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-----hhhCCHH---HHHhcEEEEeCCCcc
Confidence 45678999999999998 9999999999776 456777777643 4333321 122211112221
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
| .++++++..+.. ... .+.+..++..+++.+ ..++++.+|||||||||+|||++ +.+|+
T Consensus 95 ~~~tv~enl~~~~~----~~~-~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL----~~~p~ 165 (247)
T 2ff7_A 95 LNRSIIDNISLANP----GMS-VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL----VNNPK 165 (247)
T ss_dssp TTSBHHHHHTTTCT----TCC-HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH----TTCCS
T ss_pred ccccHHHHHhccCC----CCC-HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH----hcCCC
Confidence 1 245555433211 111 122333334445443 33456689999999999999876 57999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.++.++|+|||+...++.||+++- |.+|..
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~--l~~G~i 221 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIV--MEKGKI 221 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEE--EETTEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999998767899999999998888999987 678865
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.3e-31 Score=249.72 Aligned_cols=172 Identities=22% Similarity=0.214 Sum_probs=131.4
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
.++++||++++||+++ |||||||++++++ +++|.+.+++.. +..+... .+.+++|
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~-----i~~~~~~------------~r~ig~v 80 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKD-----VTELPPK------------DRNVGLV 80 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE-----CTTSCGG------------GTTEEEE
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEE-----CCcCCHh------------HCcEEEE
Confidence 4567999999999997 9999999999876 446777777643 3333211 1235555
Q ss_pred HHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 133 FSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 133 f~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
||. +++..++. ....+..+.+..++..+++.+..++++.+||||||||||||||+ +.+|+++|
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL----~~~P~lLL 156 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARAL----VKEPEVLL 156 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHH----TTCCSEEE
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHH----HcCCCEEE
Confidence 553 34433321 11111223567788899999999999999999999999999876 57899999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
|||||++||+..+..+.++|+++.+ +.++|+||||...+ ..||+++- |.+|...
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v--l~~G~i~ 213 (362)
T 2it1_A 157 LDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAV--IREGEIL 213 (362)
T ss_dssp EESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE--EETTEEE
T ss_pred EECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE--EECCEEE
Confidence 9999999999999999999999864 78999999997764 78999987 7788753
No 18
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=2.5e-31 Score=239.70 Aligned_cols=181 Identities=19% Similarity=0.177 Sum_probs=130.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHH--hhhHHHHHHHHH----HHHHh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIE--ELDEKKKIALRE----AWLKV 125 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~--~l~~~~~~~~~~----~~~~v 125 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +. ..+.. .+++ .+|..
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~-----~~~~~~~~~---~~~~~i~~v~Q~~ 106 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKM-----PGKVGYSAE---TVRQHIGFVSHSL 106 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBC-----CC---CCHH---HHHTTEEEECHHH
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEE-----cccccCCHH---HHcCcEEEEEcCc
Confidence 45678999999999997 9999999999775 446777776642 22 22211 1221 11222
Q ss_pred hhhh-h--hHHHhhcCCCcC--CC---CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 126 NTDF-G--SIFSLLLPGSQA--KL---SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 126 ~~~f-~--~vf~~L~~g~~~--~l---~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
...| . ++.+++..+... .+ ......+.+..++..+|+.+..++++.+|||||||||+|||||+ .+|++
T Consensus 107 ~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~----~~p~l 182 (279)
T 2ihy_A 107 LEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM----GQPQV 182 (279)
T ss_dssp HTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH----TCCSE
T ss_pred ccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh----CCCCE
Confidence 1112 1 455554332211 00 01111234567788899999999999999999999999998875 78999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhc-CCeE--EEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFK-TSQF--IIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~-~~q~--IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||||||++||+.++..+.++|+++.+ +.++ |+|||+...+ ..||+++- |++|..
T Consensus 183 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~--l~~G~i 241 (279)
T 2ihy_A 183 LILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILL--LKDGQS 241 (279)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEE--EETTEE
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999999998864 6789 9999998776 68999988 678865
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=3.1e-31 Score=237.30 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=128.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +.. . .+++....+.++
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~-----~~~---~---~~~~~i~~v~q~~~~ 89 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGER-----KKG---Y---EIRRNIGIAFQYPED 89 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE-----CCH---H---HHGGGEEEECSSGGG
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEE-----Cch---H---HhhhhEEEEeccchh
Confidence 35678999999999997 9999999999776 346677776642 211 1 122111111111
Q ss_pred --h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC--cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC
Q psy17516 129 --F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG--GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203 (264)
Q Consensus 129 --f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~--~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEP 203 (264)
+ .++.+++..+...........+.+..++..+|+. +..++++.+|||||||||+|||++ +.+|+++|||||
T Consensus 90 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL----~~~p~lllLDEP 165 (266)
T 2yz2_A 90 QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVI----VHEPDILILDEP 165 (266)
T ss_dssp GCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHH----TTCCSEEEEEST
T ss_pred hcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHH----HcCCCEEEEcCc
Confidence 1 1344443222111111122234466778889998 888999999999999999999876 578999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcchHh-hccceeEEEeeCCeE
Q psy17516 204 DAALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGMFS-NANVIFRTKFVDGNS 254 (264)
Q Consensus 204 ta~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~~-~ad~l~~v~~~~g~s 254 (264)
|++||+.++..+.++|+++. ++.++|+|||+...+. .||+++- |.+|..
T Consensus 166 ts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~--l~~G~i 216 (266)
T 2yz2_A 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVV--LEKGKK 216 (266)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEE--EETTEE
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999986 4688999999988775 6999988 678865
No 20
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=2.7e-31 Score=235.54 Aligned_cols=182 Identities=15% Similarity=0.136 Sum_probs=123.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh----ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA----MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f 129 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +...+...+ .+..+..+.++.
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~-----~~~~~~~~~--~~~~i~~v~q~~ 89 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGEN-----ILELSPDER--ARKGLFLAFQYP 89 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE-----CTTSCHHHH--HHTTBCCCCCCC
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEE-----CCCCCHHHH--HhCcEEEeccCC
Confidence 45678999999999998 9999999999885 356777777643 433332211 111000111111
Q ss_pred ---h--hHHHhhcCCCc--CCCCC--CchhhHHHhHHHHcCC-CcccccccCC-CCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 130 ---G--SIFSLLLPGSQ--AKLSP--PAGKDILDGLEVNVAF-GGLWKESLGE-LSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 130 ---~--~vf~~L~~g~~--~~l~~--~~~~~~~~~l~~~v~l-~~~~~~~~~~-LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
. ++.+++..+.. ..... .+..+.+..++..+|+ .+..++++.+ |||||||||+|||+++ .+|+++
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~----~~p~ll 165 (250)
T 2d2e_A 90 VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV----LEPTYA 165 (250)
T ss_dssp C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH----HCCSEE
T ss_pred ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH----cCCCEE
Confidence 0 22332211100 00001 1112345667778899 4788999999 9999999999999875 588999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhh--ccceeEEEeeCCeE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSN--ANVIFRTKFVDGNS 254 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~--ad~l~~v~~~~g~s 254 (264)
||||||++||+.++..+.++|+++.+ +.++|+|||+...+.. ||+++- |++|..
T Consensus 166 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~--l~~G~i 222 (250)
T 2d2e_A 166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHV--MMDGRV 222 (250)
T ss_dssp EEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEE--EETTEE
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEE--EECCEE
Confidence 99999999999999999999999864 6789999999888764 599988 678865
No 21
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=1.3e-31 Score=250.53 Aligned_cols=187 Identities=18% Similarity=0.162 Sum_probs=137.3
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+.+++++.++|.. ...++++||+|++||+++ |||||||++++++ +++|.+.+.+.
T Consensus 11 ~l~~~~l~~~y~~-----------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 73 (372)
T 1v43_A 11 EVKLENLTKRFGN-----------------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDR 73 (372)
T ss_dssp CEEEEEEEEEETT-----------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred eEEEEEEEEEECC-----------------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCE
Confidence 3556677777751 235667999999999998 9999999999876 34677777764
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccc
Q psy17516 101 AKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWK 167 (264)
Q Consensus 101 ~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~ 167 (264)
. +..+...+ +.+++|||. +++..++ .....+..+.+..++..+++.+..+
T Consensus 74 ~-----i~~~~~~~------------r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~ 136 (372)
T 1v43_A 74 D-----VTYLPPKD------------RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN 136 (372)
T ss_dssp E-----CTTSCGGG------------GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT
T ss_pred E-----CCCCChhh------------CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhc
Confidence 3 33332111 223444442 2332221 1111111235677888999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccce
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVI 244 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l 244 (264)
+++.+||||||||||||||| +.+|+++||||||++||+..+..+.++|+++.+ +.++|+||||...+ ..||++
T Consensus 137 r~~~~LSGGq~QRvalArAL----~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri 212 (372)
T 1v43_A 137 RYPAQLSGGQRQRVAVARAI----VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI 212 (372)
T ss_dssp SCTTTCCSSCHHHHHHHHHH----TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE
T ss_pred CChhhCCHHHHHHHHHHHHH----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999876 578999999999999999999999999998864 78999999997765 789999
Q ss_pred eEEEeeCCeEE
Q psy17516 245 FRTKFVDGNSN 255 (264)
Q Consensus 245 ~~v~~~~g~s~ 255 (264)
+- |.+|...
T Consensus 213 ~v--l~~G~i~ 221 (372)
T 1v43_A 213 AV--MNRGQLL 221 (372)
T ss_dssp EE--EETTEEE
T ss_pred EE--EECCEEE
Confidence 87 7788753
No 22
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=1.8e-31 Score=248.12 Aligned_cols=171 Identities=20% Similarity=0.222 Sum_probs=129.6
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHh-----hhHHHHHHHHHHHHHhhh
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEE-----LDEKKKIALREAWLKVNT 127 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~-----l~~~~~~~~~~~~~~v~~ 127 (264)
.++++||+|++||+++ |||||||++++++ ++.|.+.+.+.. +.. +.. . .+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~-----i~~~~~~~~~~-----~-------~r 82 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRL-----VASNGKLIVPP-----E-------DR 82 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEE-----EEETTEESSCG-----G-------GS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE-----CcccccccCCh-----h-------hC
Confidence 5678999999999998 9999999999876 346777776642 322 111 0 12
Q ss_pred hhhhHHHh--hcCCCcC-----------CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCC
Q psy17516 128 DFGSIFSL--LLPGSQA-----------KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKP 194 (264)
Q Consensus 128 ~f~~vf~~--L~~g~~~-----------~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~ 194 (264)
.+++|||. +++..++ .....+..+.+..++..+++.+..++++.+||||||||||||||+ +.+
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL----~~~ 158 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL----VKD 158 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH----TTC
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH----HhC
Confidence 34455543 3333221 111111224567788899999999999999999999999999876 578
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
|+++||||||++||+..+..+.++|+++.+ +.++|+||||...+ ..||+++- |.+|..
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v--l~~G~i 219 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV--LVKGKL 219 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE--EETTEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999999999998854 78999999997765 67999987 778865
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=2.3e-31 Score=248.93 Aligned_cols=173 Identities=20% Similarity=0.206 Sum_probs=131.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHh------hhHHHHHHHHHHHHHh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEE------LDEKKKIALREAWLKV 125 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~------l~~~~~~~~~~~~~~v 125 (264)
..++++||+|++||+++ |||||||++++++ ++.|.+.+.+.. +.. +...
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~-----~~~~~~~~~~~~~------------ 79 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKL-----VADPEKGIFVPPK------------ 79 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE-----EEEGGGTEECCGG------------
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEE-----CccccccccCCHh------------
Confidence 35667999999999998 9999999999876 346777776642 322 1110
Q ss_pred hhhhhhHHHh--hcCCCcCC-----------CCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhc
Q psy17516 126 NTDFGSIFSL--LLPGSQAK-----------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLF 192 (264)
Q Consensus 126 ~~~f~~vf~~--L~~g~~~~-----------l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~ 192 (264)
.+.+++|||. +++..++. ....+..+.+..++..+++.+..++++.+|||||||||||||||+
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~---- 155 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV---- 155 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHH----
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHh----
Confidence 1345556653 34433321 111111235667788899999999999999999999999998875
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
.+|+++||||||++||+..+..+.++|+++.+ +.++|+||||...+ ..||+++- |.+|...
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v--l~~G~i~ 219 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV--MNRGVLQ 219 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE--EETTEEE
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE--EeCCEEE
Confidence 68899999999999999999999999998864 78999999997765 68999987 7788753
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=4.2e-31 Score=245.13 Aligned_cols=171 Identities=20% Similarity=0.189 Sum_probs=130.2
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
.++++||++++||+++ |||||||++++++ +++|.+.+++.. +..+... + +.+++|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~-----i~~~~~~-----~-------r~ig~v 77 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD-----VTDLSPE-----K-------HDIAFV 77 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE-----CTTSCHH-----H-------HTCEEE
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEE-----CCCCchh-----h-------CcEEEE
Confidence 5567999999999998 9999999999876 356777777643 3332211 1 234555
Q ss_pred HHh--hcCCCcCCC---------CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee
Q psy17516 133 FSL--LLPGSQAKL---------SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201 (264)
Q Consensus 133 f~~--L~~g~~~~l---------~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD 201 (264)
||. +++..++.. ..... +.+..++..+++.+..++++.+||||||||||||||+ +.+|+++|||
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL----~~~P~lLLLD 152 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL----VTNPKILLLD 152 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT----TSCCSEEEEE
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH----HcCCCEEEEE
Confidence 553 333332210 01111 4566778889999999999999999999999998875 5789999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-HhhccceeEEEeeCCeEE
Q psy17516 202 EVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-FSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-~~~ad~l~~v~~~~g~s~ 255 (264)
|||++||+..+..+.++|+++.+ +.++|+||||... +..||+++- |++|...
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~v--l~~G~i~ 207 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV--VMDGKLI 207 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE--ESSSCEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEEE
Confidence 99999999999999999999854 6899999999775 578999987 7788653
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=3.3e-31 Score=237.85 Aligned_cols=180 Identities=17% Similarity=0.188 Sum_probs=127.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
.+++++||+|++||+++ ||||||+++++++ +++|.+.+.+.. +...+.. .++..+..+.++.
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~-----i~~~~~~---~~~~~i~~v~Q~~~l 104 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP-----LVQYDHH---YLHTQVAAVGQEPLL 104 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE-----GGGBCHH---HHHHHEEEECSSCCC
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE-----cccCCHH---HHhccEEEEecCCcc
Confidence 35678999999999998 9999999999775 446777777643 4443321 2222211122211
Q ss_pred --hhHHHhhcCCCcCCCCC-Cchhh-----HHHhHHHHc--CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 130 --GSIFSLLLPGSQAKLSP-PAGKD-----ILDGLEVNV--AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~-~~~~~-----~~~~l~~~v--~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
.+|++++..+... ... ..... .+..++..+ |+....++++.+|||||||||+|||+| +.+|+++|
T Consensus 105 ~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL----~~~p~lll 179 (271)
T 2ixe_A 105 FGRSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL----IRKPRLLI 179 (271)
T ss_dssp CSSBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH----TTCCSEEE
T ss_pred ccccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH----hcCCCEEE
Confidence 2455554332211 111 10001 112344445 677778899999999999999999876 57999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 200 LDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 200 lDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
|||||++||+.++..+.++|+++.+ +.++|+|||+...+..||+++- |.+|..
T Consensus 180 LDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~--l~~G~i 234 (271)
T 2ixe_A 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILF--LKEGSV 234 (271)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEE--EETTEE
T ss_pred EECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999999864 6899999999998888999988 678864
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=7.2e-31 Score=233.11 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=129.2
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---h
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD---F 129 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f 129 (264)
+++++||++++||+++ ||||||+++++++ ++ |.+.+.+.. +...+.. .+++....+.++ |
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~-----~~~~~~~---~~~~~i~~v~q~~~~~ 85 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQP-----LEAWSAT---KLALHRAYLSQQQTPP 85 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEE-----GGGSCHH---HHHHHEEEECSCCCCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEE-----CCcCCHH---HHhceEEEECCCCccC
Confidence 5678999999999997 9999999999775 45 766666642 3333321 122211112221 1
Q ss_pred -h-hHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC-------EEEe
Q psy17516 130 -G-SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP-------LYIL 200 (264)
Q Consensus 130 -~-~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~-------illl 200 (264)
. ++.+++..+.... . . .+.+..++..+|+.+..++++.+||||||||++|||+++ .+|+ ++||
T Consensus 86 ~~~tv~e~l~~~~~~~--~-~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~----~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 86 FATPVWHYLTLHQHDK--T-R-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL----QITPQANPAGQLLLL 157 (249)
T ss_dssp TTCBHHHHHHTTCSST--T-C-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH----HHCTTTCTTCCEEEE
T ss_pred CCCcHHHHHHHhhccC--C-c-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH----cCCCcCCCCCeEEEE
Confidence 1 4444443221111 1 1 344567778899999999999999999999999999876 4778 9999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++|+++. ++.++|+|||+...+ ..||+++- |.+|..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~--l~~G~i 211 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWL--LKGGKM 211 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE--EETTEE
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999986 467899999998876 68999988 678865
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.96 E-value=1.1e-30 Score=233.81 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=135.0
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhh----ccchhHHHh
Q psy17516 29 QLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEA----MTKKSIVES 98 (264)
Q Consensus 29 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l----~~~~~~~~~ 98 (264)
+++++++.++|.. +.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.
T Consensus 20 ~l~~~~l~~~y~~-----------------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 20 MLSIKDLHVSVED-----------------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp CEEEEEEEEEETT-----------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred eEEEEeEEEEECC-----------------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 4667777777751 345678999999999998 9999999999886 356777777
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh-----hHHHhhcCCC---c--CCC---CCCchhhHHHhHHHHcCCC-c
Q psy17516 99 DRAKLLKVIEELDEKKKIALREAWLKVNTDFG-----SIFSLLLPGS---Q--AKL---SPPAGKDILDGLEVNVAFG-G 164 (264)
Q Consensus 99 ~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~-----~vf~~L~~g~---~--~~l---~~~~~~~~~~~l~~~v~l~-~ 164 (264)
+.. +...+...+. +..+..+.++.. ++++.+..+. . ... ...+..+.+..++..+|+. .
T Consensus 83 g~~-----i~~~~~~~~~--~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 155 (267)
T 2zu0_C 83 GKD-----LLALSPEDRA--GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED 155 (267)
T ss_dssp TEE-----GGGSCHHHHH--HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT
T ss_pred CEE-----CCcCCHHHHh--hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh
Confidence 653 4443322211 110001111110 1222211000 0 000 0011123456677788996 5
Q ss_pred ccccccC-CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhh--
Q psy17516 165 LWKESLG-ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSN-- 240 (264)
Q Consensus 165 ~~~~~~~-~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~-- 240 (264)
..++++. +|||||||||+|||||+ .+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+...+..
T Consensus 156 ~~~~~~~~~LSgGq~QRv~iAraL~----~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~ 231 (267)
T 2zu0_C 156 LLTRSVNVGFSGGEKKRNDILQMAV----LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIK 231 (267)
T ss_dssp TTTSBTTTTCCHHHHHHHHHHHHHH----HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSC
T ss_pred HhcCCcccCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhc
Confidence 6788887 59999999999999875 58899999999999999999999999999864 6789999999988764
Q ss_pred ccceeEEEeeCCeE
Q psy17516 241 ANVIFRTKFVDGNS 254 (264)
Q Consensus 241 ad~l~~v~~~~g~s 254 (264)
||+++- |.+|..
T Consensus 232 ~d~v~~--l~~G~i 243 (267)
T 2zu0_C 232 PDYVHV--LYQGRI 243 (267)
T ss_dssp CSEEEE--EETTEE
T ss_pred CCEEEE--EECCEE
Confidence 899988 678865
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=8.1e-31 Score=233.13 Aligned_cols=171 Identities=20% Similarity=0.221 Sum_probs=123.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-G 130 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~ 130 (264)
.+++++||+|++||+++ ||||||+++++++. +.|.+.... .|.- .+|...-.+ .
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~------~i~~-----------v~q~~~~~~~~ 81 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ------SIGF-----------VPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS------CEEE-----------ECSCCCCSSCC
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec------cEEE-----------EcCCCccCCCC
Confidence 35678999999999997 99999999997763 344433100 0000 011110000 1
Q ss_pred hHHHhhcCCCcC--CC---CCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 131 SIFSLLLPGSQA--KL---SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 131 ~vf~~L~~g~~~--~l---~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
++.+++..+... .+ ......+.+..++..+|+.+..++++.+|||||||||+|||+++ .+|+++||||||+
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~----~~p~lllLDEPts 157 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA----SECKLILLDEPTS 157 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH----TTCSEEEESSSST
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcc
Confidence 444443322111 10 01112234567778899999999999999999999999998875 7889999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCe
Q psy17516 206 ALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGN 253 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~ 253 (264)
+||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++- |++|.
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~--l~~G~ 206 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLL--LNKQN 206 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEE--EETTE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE--EeCCe
Confidence 9999999999999999864 67899999998876 68999988 67887
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=6.1e-31 Score=240.18 Aligned_cols=177 Identities=23% Similarity=0.240 Sum_probs=126.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
..++++||+|++||+++ ||||||+++++++ +++|.+.+++.+ +..++.. .++..+..|.|+.
T Consensus 68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~-----i~~~~~~---~~r~~i~~v~Q~~~l 139 (306)
T 3nh6_A 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD-----ISQVTQA---SLRSHIGVVPQDTVL 139 (306)
T ss_dssp EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEE-----TTSBCHH---HHHHTEEEECSSCCC
T ss_pred ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEE-----cccCCHH---HHhcceEEEecCCcc
Confidence 45678999999999998 9999999999765 456777777753 5555432 2332221222211
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-----------CCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-----------FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-----------l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++|.+++..+... .. .+.....+..++ +.....+.+.+||||||||++|||||+ ++|+
T Consensus 140 f~~Tv~eNi~~~~~~----~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~----~~p~ 210 (306)
T 3nh6_A 140 FNDTIADNIRYGRVT----AG-NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL----KAPG 210 (306)
T ss_dssp CSEEHHHHHHTTSTT----CC-HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH----HCCS
T ss_pred CcccHHHHHHhhccc----CC-HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH----hCCC
Confidence 2444444333211 11 111222222222 333445667899999999999999875 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
++||||||++||+.+...|.+.|+++.++.++|+||||..++..||+++- |++|...
T Consensus 211 iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~v--l~~G~iv 267 (306)
T 3nh6_A 211 IILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILV--IKDGCIV 267 (306)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEE--EETTEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEE--EECCEEE
Confidence 99999999999999999999999998878899999999999999999998 7798763
No 30
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=4.3e-31 Score=233.34 Aligned_cols=169 Identities=18% Similarity=0.146 Sum_probs=125.4
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHH
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIF 133 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf 133 (264)
++++||++++ |+++ ||||||+++++++ ++.|.+.+.+.. +..... .+ +.++++|
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~-----~~-------~~i~~v~ 76 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD-----ITPLPP-----ER-------RGIGFVP 76 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE-----CTTSCT-----TT-------SCCBCCC
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-----CCcCch-----hh-------CcEEEEc
Confidence 5679999999 9998 9999999999876 446777776642 222111 11 2234444
Q ss_pred Hh--hcCCCcC--------CCCC-CchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec
Q psy17516 134 SL--LLPGSQA--------KLSP-PAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202 (264)
Q Consensus 134 ~~--L~~g~~~--------~l~~-~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDE 202 (264)
|. ++++.++ .... ....+.+..++..+|+.+..++++.+|||||||||+|||++ +.+|+++||||
T Consensus 77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral----~~~p~lllLDE 152 (240)
T 2onk_A 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL----VIQPRLLLLDE 152 (240)
T ss_dssp SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH----TTCCSSBEEES
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH----HcCCCEEEEeC
Confidence 32 2222111 0000 11123456778889999999999999999999999999876 57899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 203 VDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
||++||+.++..+.++|+++++ +.++|+|||+...+ ..||+++- |++|..
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~--l~~G~i 205 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV--MLNGRI 205 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE--EETTEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999853 78999999998765 67999988 678865
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=5.2e-31 Score=232.70 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=123.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
.+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +...+.. .+++....+.++
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~---~~~~~i~~v~q~~~l 87 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP-----IDNISLE---NWRSQIGFVSQDSAI 87 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEE-----STTTSCS---CCTTTCCEECCSSCC
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-----hhhCCHH---HHHhhEEEEcCCCcc
Confidence 35668999999999998 9999999999776 456777776642 3222210 111111111111
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccc-----------cccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWK-----------ESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~-----------~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
| .++++++..+.. .....+.+..++..+++.+..+ +++.+||||||||++|||+++ .+|+
T Consensus 88 ~~~tv~enl~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~----~~p~ 159 (243)
T 1mv5_A 88 MAGTIRENLTYGLE----GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL----RNPK 159 (243)
T ss_dssp CCEEHHHHTTSCTT----SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH----HCCS
T ss_pred ccccHHHHHhhhcc----CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh----cCCC
Confidence 1 244444432211 1111223344455666655443 456899999999999999875 5889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.++..+.++|+++.++.++|+|||+...+..||+++- |++|..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~--l~~G~i 215 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYF--IEKGQI 215 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEE--EETTEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999988777899999999998888999988 678864
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.3e-30 Score=233.23 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=123.8
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh-ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh-h
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA-MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFG-S 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~-~ 131 (264)
.+++++||+++ |++++ ||||||+++++++ |+.|.+.+.+.. +.... . + +.++ +
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~-----~~~~~-----~-~-------~~i~~~ 79 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGME-----VRKIR-----N-Y-------IRYSTN 79 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEE-----GGGCS-----C-C-------TTEEEC
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEE-----CcchH-----H-h-------hheEEE
Confidence 45678999999 99997 9999999999765 666777776642 22110 0 1 2233 3
Q ss_pred HHH----------hhcCCCcCCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 132 IFS----------LLLPGSQAKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 132 vf~----------~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
+|| ++..+.. .. ....+.+..++..+++. +..++++.+||||||||++|||+++ .+|+++||
T Consensus 80 v~Q~~~l~~tv~enl~~~~~--~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~----~~p~lllL 152 (263)
T 2pjz_A 80 LPEAYEIGVTVNDIVYLYEE--LK-GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALA----SQPEIVGL 152 (263)
T ss_dssp CGGGSCTTSBHHHHHHHHHH--HT-CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHH----TCCSEEEE
T ss_pred eCCCCccCCcHHHHHHHhhh--hc-chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH----hCCCEEEE
Confidence 333 3211100 00 11223456677788998 8899999999999999999998875 78999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhcc-ceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNAN-VIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad-~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++|+++.+ ++|+|||+...+ ..|| +++- |++|..
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~--l~~G~i 204 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYF--LVGNRL 204 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEE--EETTEE
T ss_pred ECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEE--EECCEE
Confidence 999999999999999999998865 899999998775 6899 9988 668865
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.1e-30 Score=245.53 Aligned_cols=189 Identities=19% Similarity=0.262 Sum_probs=139.7
Q ss_pred HHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc-cchhHHHhhHHH
Q psy17516 30 LSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM-TKKSIVESDRAK 102 (264)
Q Consensus 30 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-~~~~~~~~~~~~ 102 (264)
.+++++.++|..+ ....++++||+|++||+++ |||||||++++++. +.|.+.+.+.+
T Consensus 20 i~~~~l~~~y~~~---------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~- 83 (390)
T 3gd7_A 20 MTVKDLTAKYTEG---------------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVS- 83 (390)
T ss_dssp EEEEEEEEESSSS---------------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCB-
T ss_pred EEEEEEEEEecCC---------------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEE-
Confidence 4566677777422 1345667999999999998 99999999997754 45667776643
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHh--hcCCCcCC----CCCCchhhHHHhHHHHcCCCcccccccCC----
Q psy17516 103 LLKVIEELDEKKKIALREAWLKVNTDFGSIFSL--LLPGSQAK----LSPPAGKDILDGLEVNVAFGGLWKESLGE---- 172 (264)
Q Consensus 103 l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~--L~~g~~~~----l~~~~~~~~~~~l~~~v~l~~~~~~~~~~---- 172 (264)
+..++.. .++ +.+++|||. +++. +.. .......+....++..+++.+..+++|.+
T Consensus 84 ----i~~~~~~---~~r-------r~ig~v~Q~~~lf~~-tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~ 148 (390)
T 3gd7_A 84 ----WDSITLE---QWR-------KAFGVIPQKVFIFSG-TFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFV 148 (390)
T ss_dssp ----TTSSCHH---HHH-------HTEEEESCCCCCCSE-EHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCE
T ss_pred ----CCcCChH---HHh-------CCEEEEcCCcccCcc-CHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccc
Confidence 4444422 122 234555553 2221 110 01111223455677788999888999988
Q ss_pred -------CCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhcccee
Q psy17516 173 -------LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 173 -------LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~ 245 (264)
||||||||||||||++ .+|+++||||||++||+..+..+.+.|+++..+.++|+|||+...+..||+++
T Consensus 149 i~~~g~~LSGGqrQRvalARAL~----~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~ 224 (390)
T 3gd7_A 149 LVDGGCVLSHGHKQLMCLARSVL----SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFL 224 (390)
T ss_dssp ECTTTTTSCHHHHHHHHHHHHHH----TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEE
T ss_pred cccccccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEE
Confidence 9999999999998875 78899999999999999999999999998777889999999999888999998
Q ss_pred EEEeeCCeEE
Q psy17516 246 RTKFVDGNSN 255 (264)
Q Consensus 246 ~v~~~~g~s~ 255 (264)
- |.+|...
T Consensus 225 v--l~~G~i~ 232 (390)
T 3gd7_A 225 V--IEENKVR 232 (390)
T ss_dssp E--EETTEEE
T ss_pred E--EECCEEE
Confidence 8 7788763
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.96 E-value=4.3e-30 Score=229.24 Aligned_cols=175 Identities=17% Similarity=0.175 Sum_probs=121.3
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc-cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh----
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM-TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF---- 129 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~-~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f---- 129 (264)
+++++||+|++|++++ ||||||+++++++. +.|.+.+.+.. +...+.. .++..+..+.++.
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~-----i~~~~~~---~~~~~i~~v~Q~~~l~~ 106 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKN-----VNKYNRN---SIRSIIGIVPQDTILFN 106 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEE-----GGGBCHH---HHHTTEEEECSSCCCCS
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEE-----hhhcCHH---HHhccEEEEcCCCcccc
Confidence 5667999999999998 99999999997753 35667666643 4333321 1221111111111
Q ss_pred hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-------c----cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEE
Q psy17516 130 GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-------L----WKESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198 (264)
Q Consensus 130 ~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-------~----~~~~~~~LSGGekqrvaiA~~la~~l~~~~~il 198 (264)
.++.+++..+.. .. . .+....++..+++.+ . .++++.+|||||||||+|||+++ .+|+++
T Consensus 107 ~tv~enl~~~~~---~~-~-~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~----~~p~ll 177 (260)
T 2ghi_A 107 ETIKYNILYGKL---DA-T-DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL----KDPKIV 177 (260)
T ss_dssp EEHHHHHHTTCT---TC-C-HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH----HCCSEE
T ss_pred cCHHHHHhccCC---CC-C-HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH----cCCCEE
Confidence 144444432211 11 1 112222333334322 1 24578899999999999999875 588999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||||||++||+.++..+.++|+++.++.++|+|||+...++.||+++- |++|..
T Consensus 178 lLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~--l~~G~i 231 (260)
T 2ghi_A 178 IFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIIL--LNKGKI 231 (260)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEE--EETTEE
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999999998777899999999998888999987 678865
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.95 E-value=2.8e-30 Score=224.59 Aligned_cols=166 Identities=20% Similarity=0.197 Sum_probs=118.8
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---h
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD---F 129 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---f 129 (264)
+++++||+|++||+++ ||||||+++++++ ++.|.+.+.+.. +. . ++..+..+.++ |
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~-----~~--~------~~~~i~~v~q~~~~~ 90 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP-----IT--K------VKGKIFFLPEEIIVP 90 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE-----GG--G------GGGGEEEECSSCCCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE-----hh--h------hcCcEEEEeCCCcCC
Confidence 4567999999999997 9999999999775 446777776642 21 0 11101111111 1
Q ss_pred -h-hHHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 130 -G-SIFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 130 -~-~vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
. ++.+++..+... .. ..+ .+.+..++..+++.+. ++++.+||||||||++|||+| +.+|+++||||||++
T Consensus 91 ~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL----~~~p~lllLDEPts~ 163 (214)
T 1sgw_A 91 RKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTL----LVNAEIYVLDDPVVA 163 (214)
T ss_dssp TTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHT----TSCCSEEEEESTTTT
T ss_pred CCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHH----HhCCCEEEEECCCcC
Confidence 1 233332111000 11 112 3445667778899888 899999999999999998875 589999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchH-hhccceeE
Q psy17516 207 LDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF-SNANVIFR 246 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~-~~ad~l~~ 246 (264)
||+.++..+.++|+++.+ +.++|+|||+...+ ..||+++.
T Consensus 164 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~ 205 (214)
T 1sgw_A 164 IDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK 205 (214)
T ss_dssp SCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999998864 67899999998876 46888764
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=1.1e-28 Score=242.23 Aligned_cols=178 Identities=22% Similarity=0.272 Sum_probs=126.6
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD-- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~-- 128 (264)
+..++++||++++||+++ ||||||+++++++ |++|.+.++|.+ +.+++. ..+++....+.|+
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~-----~~~~~~---~~~~~~i~~v~Q~~~ 427 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD-----VRDYKL---TNLRRHFALVSQNVH 427 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE-----hhhCCH---HHHhcCeEEEcCCCc
Confidence 346778999999999997 9999999999765 456777777643 444432 2233222112222
Q ss_pred -h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCccc-----------ccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 129 -F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLW-----------KESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 129 -f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~-----------~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
| +++.+++..+.. ....++....++..+++.+.. .+.+.+||||||||++|||++ +++|
T Consensus 428 l~~~tv~eni~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral----~~~p 499 (582)
T 3b5x_A 428 LFNDTIANNIAYAAE----GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL----LRDA 499 (582)
T ss_pred cccccHHHHHhccCC----CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH----HcCC
Confidence 1 244455443321 111122333444455554433 345689999999999999886 4799
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++++|||||++||+.+...+.+.|+++.++.++|+||||..+++.||+++- |++|..
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~--l~~G~i 556 (582)
T 3b5x_A 500 PVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV--VDEGEI 556 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999999999998778899999999999999999998 778865
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=1.1e-29 Score=223.55 Aligned_cols=170 Identities=19% Similarity=0.187 Sum_probs=116.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||+|++|++++ ||||||+++++++ +++|.+.+.+. +.-+ +|...-...+
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~------i~~v-----------~Q~~~~~~~t 81 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------VAYV-----------PQQAWIQNDS 81 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC------EEEE-----------CSSCCCCSEE
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE------EEEE-----------cCCCcCCCcC
Confidence 45678999999999998 9999999999775 34566655541 1111 1111000125
Q ss_pred HHHhhcCCCcCCCCCCchhhHH--HhHHHHcCCC-----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDIL--DGLEVNVAFG-----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~--~~l~~~v~l~-----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
+.+++..+... ......... .++...++.. ...++++.+||||||||++|||+++ .+|+++||||||
T Consensus 82 v~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~----~~p~lllLDEPt 155 (237)
T 2cbz_A 82 LRENILFGCQL--EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY----SNADIYLFDDPL 155 (237)
T ss_dssp HHHHHHTTSCC--CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH----HCCSEEEEESTT
T ss_pred HHHHhhCcccc--CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCcc
Confidence 55655433211 111111111 1122223321 1346789999999999999999875 588999999999
Q ss_pred CCCCHHHHHHHHHHHH---HhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 205 AALDLSHTQNIGQMLK---RHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 205 a~LD~~~~~~i~~ll~---~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||+.++..+.++|. ++.++.++|+|||+...+..||+++- |++|..
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~--l~~G~i 206 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIV--MSGGKI 206 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEE--EETTEE
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEE--EeCCEE
Confidence 9999999999999984 44457899999999998888999988 678865
No 38
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=4.1e-29 Score=218.78 Aligned_cols=166 Identities=22% Similarity=0.211 Sum_probs=113.0
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.+++++||+|++|++++ ||||||+++++++ +++|.+.+.+. |.-+. |...-...+
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------i~~v~-----------q~~~~~~~t 84 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ISFCS-----------QFSWIMPGT 84 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSC------EEEEC-----------SSCCCCSBC
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCE------EEEEe-----------cCCcccCCC
Confidence 45678999999999998 9999999999775 34566655541 11110 110000025
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEe
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYIL 200 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illl 200 (264)
+++++..+... .. .....+...+++.+ ...+.+.+||||||||++|||+++ .+|+++||
T Consensus 85 v~enl~~~~~~----~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~----~~p~lllL 154 (229)
T 2pze_A 85 IKENIIFGVSY----DE--YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY----KDADLYLL 154 (229)
T ss_dssp HHHHHHTTSCC----CH--HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH----SCCSEEEE
T ss_pred HHHHhhccCCc----Ch--HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 55554433110 00 01111111222211 223456899999999999998874 78999999
Q ss_pred ecCCCCCCHHHHHHHHHH-HHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 201 DEVDAALDLSHTQNIGQM-LKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 201 DEPta~LD~~~~~~i~~l-l~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
||||++||+.++..+.++ ++++.++.++|+|||+...+..||+++- |++|..
T Consensus 155 DEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~--l~~G~i 207 (229)
T 2pze_A 155 DSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI--LHEGSS 207 (229)
T ss_dssp ESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEE--EETTEE
T ss_pred ECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEE--EECCEE
Confidence 999999999999999997 4555557899999999988888999988 678865
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.95 E-value=1.3e-28 Score=241.70 Aligned_cols=178 Identities=18% Similarity=0.195 Sum_probs=126.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+..++++||++++||+++ ||||||+++++++ |++|.+.++|.+ +.+++.. .+++....+.|+.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----~~~~~~~---~~~~~i~~v~Q~~~ 427 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD-----LREYTLA---SLRNQVALVSQNVH 427 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE-----TTTBCHH---HHHHTEEEECSSCC
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE-----ccccCHH---HHHhhCeEEccCCc
Confidence 346778999999999997 9999999999765 456777777753 5444422 2332221122221
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+++.+++..+.. ....++....++..+++.+ ...+.+.+||||||||++|||+++ ++|
T Consensus 428 l~~~tv~eni~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~----~~p 499 (582)
T 3b60_A 428 LFNDTVANNIAYART----EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL----RDS 499 (582)
T ss_dssp CCSSBHHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH----HCC
T ss_pred CCCCCHHHHHhccCC----CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH----hCC
Confidence 244455443321 0111222333444444433 334456899999999999999875 688
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++++|||||++||+.+...+.+.|+++.++.++|+||||..+++.||+++- |++|..
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~--l~~G~i 556 (582)
T 3b60_A 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV--VEDGII 556 (582)
T ss_dssp SEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEE--EETTEE
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE--EECCEE
Confidence 999999999999999999999999998778899999999999999999998 779865
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=1.8e-28 Score=241.66 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=126.2
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+..++++||++++||+++ ||||||+++++++ +++|++.++|.+ +..++.. .+++....+.|+.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~-----i~~~~~~---~~r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID-----IRKIKRS---SLRSSIGIVLQDTI 439 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE-----GGGSCHH---HHHHHEEEECTTCC
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE-----hhhCCHH---HHHhceEEEeCCCc
Confidence 346789999999999998 9999999999765 456777777753 5555532 3343222222221
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
+++.+++..|... . . ++.....+..+++.+ ...+...+||||||||++||||+ +++|
T Consensus 440 lf~~tv~eni~~~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral----~~~p 510 (598)
T 3qf4_B 440 LFSTTVKENLKYGNPG-A--T--DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF----LANP 510 (598)
T ss_dssp CCSSBHHHHHHSSSTT-C--C--TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH----HTCC
T ss_pred cccccHHHHHhcCCCC-C--C--HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH----hcCC
Confidence 2455554433211 1 1 111222222233222 23344579999999999999886 4789
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
+++||||||++||+.+...+.+.|+++.++.++|+||||..++..||+++- |++|..
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~--l~~G~i 567 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIV--LRDGEI 567 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEE--ECSSSE
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE--EECCEE
Confidence 999999999999999999999999998878899999999999999999998 778865
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=1.9e-28 Score=241.00 Aligned_cols=177 Identities=21% Similarity=0.237 Sum_probs=127.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
..++++||++++||+++ ||||||+++++++ +++|++.+++.+ +..++.. .++.....+.|+.
T Consensus 357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~-----i~~~~~~---~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD-----VRTVKLK---DLRGHISAVPQETVL 428 (587)
T ss_dssp CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB-----GGGBCHH---HHHHHEEEECSSCCC
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE-----cccCCHH---HHHhheEEECCCCcC
Confidence 46789999999999998 9999999998765 446777777753 6555532 2343222222221
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHH-----HhHHHHc-----CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCE
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDIL-----DGLEVNV-----AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPL 197 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~-----~~l~~~v-----~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~i 197 (264)
+++.+++..+... ...++.. .++...+ |+.....+.+.+||||||||++||||+ +++|++
T Consensus 429 f~~tv~eni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal----~~~p~i 500 (587)
T 3qf4_A 429 FSGTIKENLKWGRED----ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL----VKKPKV 500 (587)
T ss_dssp CSEEHHHHHTTTCSS----CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHH----HTCCSE
T ss_pred cCccHHHHHhccCCC----CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHH----HcCCCE
Confidence 2455555433211 1111111 1111111 334455678899999999999999886 479999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
+||||||++||+.+...+.+.|+++.++.|+|+||||..++..||+++- |++|..
T Consensus 501 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v--l~~G~i 555 (587)
T 3qf4_A 501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILV--LHEGKV 555 (587)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEE--EETTEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEE--EECCEE
Confidence 9999999999999999999999998778999999999999999999998 779865
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.95 E-value=2.1e-28 Score=240.85 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=126.2
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
..++++||++++||+++ ||||||+++++++ |++|.+.++|.+ +.+++.. .+++....+.|+.
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----i~~~~~~---~~~~~i~~v~Q~~~l 429 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD-----IRQLNPV---WLRSKIGTVSQEPIL 429 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEE-----TTTBCHH---HHHHSEEEECSSCCC
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEE-----hhhCCHH---HHHhceEEEccCCcc
Confidence 36789999999999998 9999999999775 456777777753 5444432 2332111122211
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcc-------c----ccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGL-------W----KESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~-------~----~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
+++.+++..+.... ....++....++..+++.+. . .+.+.+||||||||++||||++ ++|+
T Consensus 430 ~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~----~~p~ 503 (595)
T 2yl4_A 430 FSCSIAENIAYGADDP--SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL----KNPK 503 (595)
T ss_dssp CSSBHHHHHHTTSSST--TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH----HCCS
T ss_pred cCCCHHHHHhhcCCCc--cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH----cCCC
Confidence 24445543332110 00112233444445554322 2 2345899999999999999875 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.+...+.+.|+++.++.++|+||||..+++.||+++- |++|..
T Consensus 504 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~--l~~G~i 559 (595)
T 2yl4_A 504 ILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAV--LDQGKI 559 (595)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEE--EETTEE
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEE--EECCEE
Confidence 99999999999999999999999998778899999999999999999988 678865
No 43
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=2.4e-28 Score=239.82 Aligned_cols=177 Identities=21% Similarity=0.237 Sum_probs=124.9
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
..++++||++++||+++ ||||||++++.++ |++|++.++|.+ +..++.. .+++....+.|+
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~-----~~~~~~~---~~r~~i~~v~Q~~~l 426 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN-----IKDFLTG---SLRNQIGLVQQDNIL 426 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE-----GGGSCHH---HHHHTEEEECSSCCC
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE-----hhhCCHH---HHhhheEEEeCCCcc
Confidence 46789999999999998 9999999998765 456777777753 5555432 233221112221
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCC-----------CcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAF-----------GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l-----------~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
| +++.+++..|.. ... ++.....+..+++ .....+.+.+||||||||++||||++ ++|+
T Consensus 427 ~~~tv~eni~~~~~----~~~-~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~----~~p~ 497 (578)
T 4a82_A 427 FSDTVKENILLGRP----TAT-DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL----NNPP 497 (578)
T ss_dssp CSSBHHHHHGGGCS----SCC-HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH----HCCS
T ss_pred CcccHHHHHhcCCC----CCC-HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH----cCCC
Confidence 1 244444432211 111 1112222222332 22334566799999999999999875 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
+++|||||++||+.+...+.+.++++.++.++|+||||..++..||+++- |++|...
T Consensus 498 illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~--l~~G~i~ 554 (578)
T 4a82_A 498 ILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVV--IENGHIV 554 (578)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEE--EETTEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE--EECCEEE
Confidence 99999999999999999999999988878899999999999999999998 7798753
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.94 E-value=6.9e-28 Score=218.38 Aligned_cols=164 Identities=23% Similarity=0.226 Sum_probs=111.1
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
+++++||+|++|++++ ||||||+++++++ +++|.+.+.+. |.-+ +|...-...++
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~------i~~v-----------~Q~~~l~~~tv 115 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ISFC-----------SQNSWIMPGTI 115 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC------EEEE-----------CSSCCCCSSBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE------EEEE-----------eCCCccCcccH
Confidence 4667999999999997 9999999999776 34566655541 1111 11100001256
Q ss_pred HHhhcCCCcCCCCCCchhhHHHhHHHHcCCCc-----------ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee
Q psy17516 133 FSLLLPGSQAKLSPPAGKDILDGLEVNVAFGG-----------LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201 (264)
Q Consensus 133 f~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~-----------~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD 201 (264)
++++. +.. . .. .....++..+++.+ ...+.+.+||||||||++|||+++ .+|+++|||
T Consensus 116 ~enl~-~~~--~--~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~----~~p~lllLD 184 (290)
T 2bbs_A 116 KENII-GVS--Y--DE--YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY----KDADLYLLD 184 (290)
T ss_dssp HHHHH-TTC--C--CH--HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHH----SCCSEEEEE
T ss_pred HHHhh-Ccc--c--ch--HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHH----CCCCEEEEE
Confidence 66655 321 0 10 01111122223221 123456899999999999998875 789999999
Q ss_pred cCCCCCCHHHHHHHHHHH-HHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 202 EVDAALDLSHTQNIGQML-KRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 202 EPta~LD~~~~~~i~~ll-~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
|||++||+.++..+.+++ +++.++.++|+|||+...+..||+++- |.+|..
T Consensus 185 EPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~--l~~G~i 236 (290)
T 2bbs_A 185 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI--LHEGSS 236 (290)
T ss_dssp STTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEE--EETTEE
T ss_pred CCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEE--EECCeE
Confidence 999999999999999964 555557899999999998888999987 678865
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=1.4e-27 Score=253.26 Aligned_cols=178 Identities=20% Similarity=0.220 Sum_probs=129.6
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD--- 128 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~--- 128 (264)
..++++||+|++||.++ ||||||++++..+ |++|.+.++|.+ |.+++. ..+|..+..|+|+
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~d-----i~~i~~---~~lR~~i~~V~Qdp~L 1164 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSE-----IKTLNP---EHTRSQIAIVSQEPTL 1164 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEE-----TTTBCH---HHHHTTEEEECSSCCC
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEE-----hhhCCH---HHHHhheEEECCCCEe
Confidence 35778999999999998 9999999998664 457788888864 777763 3455332223332
Q ss_pred h-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-------CCccccc----ccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 129 F-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-------FGGLWKE----SLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 129 f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-------l~~~~~~----~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
| ++|.+++..|... ....++.+...+..++ +|+..+. ...+||||||||+|||||+ +++|+
T Consensus 1165 F~gTIreNI~~gld~---~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl----lr~~~ 1237 (1321)
T 4f4c_A 1165 FDCSIAENIIYGLDP---SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL----VRNPK 1237 (1321)
T ss_dssp CSEEHHHHHSSSSCT---TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH----HSCCS
T ss_pred eCccHHHHHhccCCC---CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH----HhCCC
Confidence 1 3445554433211 1111122222333333 3433443 3467999999999999876 57999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++|||||||+||+++...|.+.|++..++.|+|+||||..++..||+++- |++|..
T Consensus 1238 ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~V--ld~G~I 1293 (1321)
T 4f4c_A 1238 ILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAV--VSNGTI 1293 (1321)
T ss_dssp EEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEE--ESSSSE
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEE--EECCEE
Confidence 99999999999999999999999998889999999999999999999998 789975
No 46
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.93 E-value=7e-26 Score=214.45 Aligned_cols=160 Identities=26% Similarity=0.445 Sum_probs=109.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhhcC---------CCcCCCCCCchh-hHHHhHHHHcCCCcccccccCC
Q psy17516 103 LLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLP---------GSQAKLSPPAGK-DILDGLEVNVAFGGLWKESLGE 172 (264)
Q Consensus 103 l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L~~---------g~~~~l~~~~~~-~~~~~l~~~v~l~~~~~~~~~~ 172 (264)
+.+.+..++..+...|..+|..++.+|..+|+.++. |+.+.+.+.+.. ....++...+.++++..+++..
T Consensus 254 l~~~i~~L~~~r~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 333 (430)
T 1w1w_A 254 ILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEY 333 (430)
T ss_dssp ------------------CHHHHHHHHHHHHHHTC-----------CEEEEC------------CEEEECTTCCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCCceEEEEecCCCCcccCceEEEEECCCcccccccc
Confidence 344566677666677888898899999888888774 333333333222 2334443334446677788999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccceeEEEee-
Q psy17516 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIFRTKFV- 250 (264)
Q Consensus 173 LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~~v~~~- 250 (264)
||||||||++||++||...+.|||+|||||||++||+.++..+.++|+++.. +.|+|||||+..+++.||++|+++++
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~~~ 413 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQ 413 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEEET
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEEeC
Confidence 9999999999999998766689999999999999999999999999998764 67999999999999999999999986
Q ss_pred -CCeEEEEEeecc
Q psy17516 251 -DGNSNVTRTVNR 262 (264)
Q Consensus 251 -~g~s~i~~~~~~ 262 (264)
+|+|+++.+...
T Consensus 414 ~~~~s~~~~~~~~ 426 (430)
T 1w1w_A 414 QENSSKIITLDLS 426 (430)
T ss_dssp TTTEEEEEEEEGG
T ss_pred CCCeeEEEEEecc
Confidence 499999987653
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.92 E-value=4.3e-26 Score=241.88 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=130.9
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF- 129 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f- 129 (264)
+..++++||+|++|+.++ ||||||++++.++ +.+|.+.++|.+ |.+++. ..+|.....|.|+.
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~-----i~~~~~---~~lr~~i~~v~Q~~~ 502 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVD-----VRDINL---EFLRKNVAVVSQEPA 502 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEE-----TTTSCH---HHHHHHEEEECSSCC
T ss_pred CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCcc-----chhccH---HHHhhcccccCCcce
Confidence 467889999999999998 9999999988654 456778777753 666663 34554333333332
Q ss_pred ---hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-------CCccc----ccccCCCCHHHHHHHHHHHHHHHhhcCCC
Q psy17516 130 ---GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-------FGGLW----KESLGELSGGQRSLVALSLVLAMLLFKPA 195 (264)
Q Consensus 130 ---~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-------l~~~~----~~~~~~LSGGekqrvaiA~~la~~l~~~~ 195 (264)
++|.+++..|... ...+ .+...+..++ +|+.. ......||||||||+|||||+ +++|
T Consensus 503 Lf~~TI~eNI~~g~~~----~~~~-~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl----~~~~ 573 (1321)
T 4f4c_A 503 LFNCTIEENISLGKEG----ITRE-EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL----VRNP 573 (1321)
T ss_dssp CCSEEHHHHHHTTCTT----CCHH-HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH----TTCC
T ss_pred eeCCchhHHHhhhccc----chHH-HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH----ccCC
Confidence 3666666544311 1111 1222222222 33322 345578999999999998875 7899
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeEE
Q psy17516 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255 (264)
Q Consensus 196 ~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s~ 255 (264)
+++|||||||+||+.+...|.+.|.++.++.|+|+||||..++..||+++- |++|...
T Consensus 574 ~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iiv--l~~G~iv 631 (1321)
T 4f4c_A 574 KILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIIS--CKNGQVV 631 (1321)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEE--EETTEEE
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEE--eeCCeee
Confidence 999999999999999999999999998889999999999999999999998 7899764
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=1.5e-25 Score=218.52 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=118.4
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-hh
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-GS 131 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~~ 131 (264)
.+..+||+|++||+++ ||||||+++++++ ++.|.+...+.. +.-+. |.+...+ .+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----i~~~~-----------q~~~~~~~~t 346 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQI-----LSYKP-----------QRIFPNYDGT 346 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCC-----EEEEC-----------SSCCCCCSSB
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCee-----eEeec-----------hhcccccCCC
Confidence 3455678899999998 9999999999775 345555443321 21111 1111111 24
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
|++.+......... ........++..+++.+..++++.+|||||||||+|||+++ ++|+++||||||++||+.+
T Consensus 347 v~~~l~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~----~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 347 VQQYLENASKDALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLA----KEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHHHHHHCSSTTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH----SCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHhhhhccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHH
Confidence 44443211111111 11234566677889999999999999999999999998875 7899999999999999999
Q ss_pred HHHHHHHHHHhhc--CCeEEEEEeCcchHh-hccceeEEE
Q psy17516 212 TQNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVIFRTK 248 (264)
Q Consensus 212 ~~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l~~v~ 248 (264)
+..+.++|+++.+ +.++|+||||...+. .||+++-+.
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999863 678999999988775 699998743
No 49
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=4.7e-25 Score=201.47 Aligned_cols=100 Identities=32% Similarity=0.564 Sum_probs=89.5
Q ss_pred CCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhc
Q psy17516 162 FGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 162 l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~a 241 (264)
.++..+.++.+||||||||++||+++|...+.+|+++||||||++||+.++..+.++|+++.++.|+|+|||+..+++.|
T Consensus 209 ~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~ 288 (322)
T 1e69_A 209 KPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAA 288 (322)
T ss_dssp CTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGC
T ss_pred cCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhC
Confidence 34556778899999999999999998754457899999999999999999999999999987678999999999899999
Q ss_pred cceeEEEeeCCeEEEEEeec
Q psy17516 242 NVIFRTKFVDGNSNVTRTVN 261 (264)
Q Consensus 242 d~l~~v~~~~g~s~i~~~~~ 261 (264)
|+++++.|.+|.|++.++..
T Consensus 289 d~~~~v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 289 DLLHGVTMVNGVSAIVPVEV 308 (322)
T ss_dssp SEEEEEEESSSCEEEEECCC
T ss_pred ceEEEEEEeCCEEEEEEEEc
Confidence 99999999999999987653
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=3e-25 Score=219.20 Aligned_cols=92 Identities=20% Similarity=0.357 Sum_probs=81.9
Q ss_pred HHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEE
Q psy17516 152 ILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFII 230 (264)
Q Consensus 152 ~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~Ii 230 (264)
.+..++..+|+.+..++++.+|||||||||+||++++ .+|+++||||||++||+.++..+.++|+++.+ +.++|+
T Consensus 208 ~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~----~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIi 283 (607)
T 3bk7_A 208 KFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL----RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283 (607)
T ss_dssp CHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH----SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3556777899999999999999999999999998875 78999999999999999999999999999865 789999
Q ss_pred EEeCcchH-hhccceeEE
Q psy17516 231 VSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 231 VTH~~~~~-~~ad~l~~v 247 (264)
||||...+ ..||+++-+
T Consensus 284 vsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 284 VEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp ECSCHHHHHHHCSEEEEE
T ss_pred EecChHHHHhhCCEEEEE
Confidence 99998876 569999763
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=2.2e-25 Score=217.39 Aligned_cols=92 Identities=20% Similarity=0.347 Sum_probs=81.7
Q ss_pred HHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEE
Q psy17516 152 ILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFII 230 (264)
Q Consensus 152 ~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~Ii 230 (264)
.+..++..+|+.+..++++.+|||||||||+||++++ .+|+++||||||++||+.++..+.++|+++.+ +.++|+
T Consensus 138 ~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~----~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 138 KLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL----RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp CHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH----SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3556777899998899999999999999999998875 78899999999999999999999999998864 789999
Q ss_pred EEeCcchH-hhccceeEE
Q psy17516 231 VSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 231 VTH~~~~~-~~ad~l~~v 247 (264)
||||...+ ..||+++-+
T Consensus 214 vsHd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 214 VEHDLAVLDYLSDIIHVV 231 (538)
T ss_dssp ECSCHHHHHHHCSEEEEE
T ss_pred EeCCHHHHHHhCCEEEEE
Confidence 99998866 579999873
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=1.7e-25 Score=236.68 Aligned_cols=178 Identities=19% Similarity=0.222 Sum_probs=123.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
..++++||+|++||+++ ||||||++++.++ +++|.+.++|.+ +..++. ..+|.....|.|+.
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~-----i~~~~~---~~~r~~i~~v~Q~~~l 1118 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE-----IKQLNV---QWLRAQLGIVSQEPIL 1118 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSC-----TTSSCH---HHHTTSCEEEESSCCC
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE-----cccCCH---HHHHhceEEECCCCcc
Confidence 46789999999999998 9999999999765 456777777753 555542 22332111122211
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcC-------CCccc----ccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVA-------FGGLW----KESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~-------l~~~~----~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++|.+++..+.... ....++ .......++ +++.. .....+||||||||++|||+++ ++|+
T Consensus 1119 ~~~ti~eNi~~~~~~~--~~~~~~-i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~----~~p~ 1191 (1284)
T 3g5u_A 1119 FDCSIAENIAYGDNSR--VVSYEE-IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV----RQPH 1191 (1284)
T ss_dssp CSSBHHHHHTCCCSSC--CCCHHH-HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH----HCCS
T ss_pred ccccHHHHHhccCCCC--CCCHHH-HHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH----cCCC
Confidence 23444443332110 011111 111122222 22222 2345689999999999999875 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++||||||++||+.+...+.+.|++..++.++|+||||..++..||+++- |++|..
T Consensus 1192 iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~v--l~~G~i 1247 (1284)
T 3g5u_A 1192 ILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV--IQNGKV 1247 (1284)
T ss_dssp SEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEE--EETBEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEE--EECCEE
Confidence 99999999999999999999999987778899999999999999999998 779865
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=3.1e-25 Score=219.02 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=114.1
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-hh
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-GS 131 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~~ 131 (264)
.++.++|+|++||+++ ||||||++++.++. +.|.+.+ ... +.-+ +|.....+ .+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-~~~-----i~~v-----------~Q~~~~~~~~t 433 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLT-----VAYK-----------PQYIKAEYEGT 433 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-CCC-----EEEE-----------CSSCCCCCSSB
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-eeE-----EEEE-----------ecCccCCCCCc
Confidence 4556777789999998 99999999997753 3444432 100 0000 01100001 12
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
|.+.+........ .....+..++..+++.+..++++.+|||||||||+|||++ +++|+++||||||++||+.+
T Consensus 434 v~e~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL----~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 434 VYELLSKIDSSKL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL----LRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHHHHHHHH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHH----TSCCSEEEEECTTTTCCHHH
T ss_pred HHHHHHhhhccCC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH----HhCCCEEEEeCCccCCCHHH
Confidence 2222111000000 0123345667788999889999999999999999999876 57999999999999999999
Q ss_pred HHHHHHHHHHhh--cCCeEEEEEeCcchHh-hccceeEEE
Q psy17516 212 TQNIGQMLKRHF--KTSQFIIVSLKEGMFS-NANVIFRTK 248 (264)
Q Consensus 212 ~~~i~~ll~~~~--~~~q~IiVTH~~~~~~-~ad~l~~v~ 248 (264)
+..+.++|+++. .+.++|+||||...+. .||+++-+.
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 999999999985 3789999999988774 799998843
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=1.9e-25 Score=236.31 Aligned_cols=176 Identities=20% Similarity=0.215 Sum_probs=123.4
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh--
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-- 129 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-- 129 (264)
..++++||+|++||+++ ||||||++++.++ +++|.+.++|.+ +..++.. .++.....|.|+.
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~-----i~~~~~~---~~r~~i~~v~Q~~~l 475 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD-----IRTINVR---YLREIIGVVSQEPVL 475 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEE-----GGGSCHH---HHHHHEEEECSSCCC
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-----HHhCCHH---HHHhheEEEcCCCcc
Confidence 46789999999999998 9999999998765 456777777753 6666532 3342222222221
Q ss_pred --hhHHHhhcCCCcCCCCCCchhhHHHhHHHHc-------CCC----cccccccCCCCHHHHHHHHHHHHHHHhhcCCCC
Q psy17516 130 --GSIFSLLLPGSQAKLSPPAGKDILDGLEVNV-------AFG----GLWKESLGELSGGQRSLVALSLVLAMLLFKPAP 196 (264)
Q Consensus 130 --~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v-------~l~----~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ 196 (264)
++|.+++..|.. . ...++ .......+ .++ ......+.+||||||||+|||||+. ++|+
T Consensus 476 ~~~ti~eNi~~g~~---~-~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~----~~p~ 546 (1284)
T 3g5u_A 476 FATTIAENIRYGRE---D-VTMDE-IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV----RNPK 546 (1284)
T ss_dssp CSSCHHHHHHHHCS---S-CCHHH-HHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH----HCCS
T ss_pred CCccHHHHHhcCCC---C-CCHHH-HHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh----cCCC
Confidence 244444332211 0 11111 11111111 222 2234567799999999999998864 6889
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 197 LYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 197 illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
++|||||||+||+.+...+.+.++...++.|+|+||||..++..||+++- |++|..
T Consensus 547 iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~v--l~~G~i 602 (1284)
T 3g5u_A 547 ILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAG--FDGGVI 602 (1284)
T ss_dssp EEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEE--CSSSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE--EECCEE
Confidence 99999999999999999999999888788999999999999999999998 778854
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=2.7e-25 Score=216.76 Aligned_cols=164 Identities=20% Similarity=0.251 Sum_probs=113.8
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-hh
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-GS 131 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~~ 131 (264)
.++++||+|++||+++ ||||||++++.++. +.|.+.+ .. .|.-+ +|.....+ .+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-~~-----~i~~v-----------~Q~~~~~~~~t 363 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-DL-----TVAYK-----------PQYIKADYEGT 363 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-CC-----CEEEE-----------CSSCCCCCSSB
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-Cc-----eEEEE-----------ecCCcCCCCCc
Confidence 4566778889999998 99999999997753 3444432 10 00000 00000001 12
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
|.+.+........ ...+.+..++..+++.+..++++.+|||||||||+|||++ +.+|+++||||||++||+.+
T Consensus 364 v~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL----~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 364 VYELLSKIDASKL---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATL----LRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHH----TSCCSEEEEECTTTTCCHHH
T ss_pred HHHHHHhhhccCC---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH----HhCCCEEEEeCCcccCCHHH
Confidence 2221110000000 0123445667788998888999999999999999999876 57899999999999999999
Q ss_pred HHHHHHHHHHhh--cCCeEEEEEeCcchH-hhccceeEEE
Q psy17516 212 TQNIGQMLKRHF--KTSQFIIVSLKEGMF-SNANVIFRTK 248 (264)
Q Consensus 212 ~~~i~~ll~~~~--~~~q~IiVTH~~~~~-~~ad~l~~v~ 248 (264)
+..+.++|+++. .+.++|+||||...+ ..||+++-+.
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999985 378999999998876 5799998843
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=4.6e-24 Score=212.51 Aligned_cols=89 Identities=26% Similarity=0.363 Sum_probs=78.4
Q ss_pred hHHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCCCC--EEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEE
Q psy17516 155 GLEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKPAP--LYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFII 230 (264)
Q Consensus 155 ~l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~~~--illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~Ii 230 (264)
+++..+|+.+. .++++.+|||||||||+||||++ .+|+ ++||||||++||+.++..+.++|+++.+ +.++|+
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~----~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~ 259 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIG----SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 259 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHH----TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHh----hCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 34667888765 68999999999999999999875 5555 9999999999999999999999999864 789999
Q ss_pred EEeCcchHhhccceeEE
Q psy17516 231 VSLKEGMFSNANVIFRT 247 (264)
Q Consensus 231 VTH~~~~~~~ad~l~~v 247 (264)
||||...+..||+++-+
T Consensus 260 vtHd~~~~~~~d~ii~l 276 (670)
T 3ux8_A 260 VEHDEDTMLAADYLIDI 276 (670)
T ss_dssp ECCCHHHHHHCSEEEEE
T ss_pred EeCCHHHHhhCCEEEEe
Confidence 99999999999999873
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=3.7e-24 Score=213.24 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=80.8
Q ss_pred hHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCC--CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEE
Q psy17516 155 GLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKP--APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFII 230 (264)
Q Consensus 155 ~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~--~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~Ii 230 (264)
..+..+++.. ..++++.+|||||||||+|||+++. +| |+++||||||++||+.++..+.++|+++.+ +.++|+
T Consensus 525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~---~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR---RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHS---CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhh---CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4455678764 4688999999999999999998752 32 469999999999999999999999999864 789999
Q ss_pred EEeCcchHhhccceeEEEe------eCCeE
Q psy17516 231 VSLKEGMFSNANVIFRTKF------VDGNS 254 (264)
Q Consensus 231 VTH~~~~~~~ad~l~~v~~------~~g~s 254 (264)
||||...+..||+++- | .+|..
T Consensus 602 vtHd~~~~~~~d~i~~--l~~~~g~~~G~i 629 (670)
T 3ux8_A 602 IEHNLDVIKTADYIID--LGPEGGDRGGQI 629 (670)
T ss_dssp ECCCHHHHTTCSEEEE--EESSSGGGCCEE
T ss_pred EeCCHHHHHhCCEEEE--ecCCcCCCCCEE
Confidence 9999999999999987 5 57765
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.8e-24 Score=211.29 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=114.0
Q ss_pred cccccceeeecc-----ceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy17516 61 LGSMSSFSVKVG-----AMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNT 127 (264)
Q Consensus 61 ~~~~v~~~v~~G-----e~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~ 127 (264)
..++++|++.+| |+++ ||||||+++++++. +.|..+ ... .+.-+ +|.+..
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~~~-----~i~~~-----------~q~~~~ 424 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-PKL-----NVSMK-----------PQKIAP 424 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-CSC-----CEEEE-----------CSSCCC
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-cCC-----cEEEe-----------cccccc
Confidence 356899999999 5566 99999999997764 344311 000 00000 011111
Q ss_pred hh-hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 128 DF-GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 128 ~f-~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
.| .++++.+....... .. .......++..+++.+..++++.+|||||||||+|||++ +.+|+++||||||++
T Consensus 425 ~~~~tv~e~~~~~~~~~--~~-~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL----~~~p~lLlLDEPT~g 497 (608)
T 3j16_B 425 KFPGTVRQLFFKKIRGQ--FL-NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLAL----GIPADIYLIDEPSAY 497 (608)
T ss_dssp CCCSBHHHHHHHHCSST--TT-SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHT----TSCCSEEEECCTTTT
T ss_pred cCCccHHHHHHHHhhcc--cc-cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH----HhCCCEEEEECCCCC
Confidence 11 13333322111000 11 123455667788999999999999999999999998875 579999999999999
Q ss_pred CCHHHHHHHHHHHHHhh--cCCeEEEEEeCcchH-hhccceeEE
Q psy17516 207 LDLSHTQNIGQMLKRHF--KTSQFIIVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 207 LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~~~~-~~ad~l~~v 247 (264)
||+.++..+.++|+++. .+.++|+||||...+ ..||+++-+
T Consensus 498 LD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl 541 (608)
T 3j16_B 498 LDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541 (608)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999975 378999999998876 569999873
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5e-24 Score=210.45 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=82.8
Q ss_pred hHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEE
Q psy17516 151 DILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFI 229 (264)
Q Consensus 151 ~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~I 229 (264)
+.+..++..+++.+..++++.+|||||||||+||++++ .+|+++||||||++||+.++..+.++|+++.+ +.++|
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi 275 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV----QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHH----SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEE
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHH----hCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34667778899999999999999999999999998865 78899999999999999999999999999875 67899
Q ss_pred EEEeCcchH-hhccceeEE
Q psy17516 230 IVSLKEGMF-SNANVIFRT 247 (264)
Q Consensus 230 iVTH~~~~~-~~ad~l~~v 247 (264)
+||||...+ ..||+++-+
T Consensus 276 ~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 276 CVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp EECSCHHHHHHHCSEEEEE
T ss_pred EEeCCHHHHHHhCCEEEEE
Confidence 999998766 579999873
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=4.3e-24 Score=208.29 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=81.3
Q ss_pred HHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEE
Q psy17516 152 ILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231 (264)
Q Consensus 152 ~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiV 231 (264)
....++..+++.+..++++.+|||||||||+||+|++ .+|+++||||||++||+.++..+.++|+++.++.++|+|
T Consensus 118 ~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~----~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~v 193 (538)
T 3ozx_A 118 KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL----READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193 (538)
T ss_dssp CHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH----SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3556677889999999999999999999999998865 789999999999999999999999999998778899999
Q ss_pred EeCcchH-hhccceeE
Q psy17516 232 SLKEGMF-SNANVIFR 246 (264)
Q Consensus 232 TH~~~~~-~~ad~l~~ 246 (264)
|||...+ ..||+++-
T Consensus 194 sHdl~~~~~~~d~i~v 209 (538)
T 3ozx_A 194 DHDLIVLDYLTDLIHI 209 (538)
T ss_dssp CSCHHHHHHHCSEEEE
T ss_pred EeChHHHHhhCCEEEE
Confidence 9998765 57998865
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=1.4e-23 Score=215.74 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=117.1
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhh----
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTD---- 128 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~---- 128 (264)
+.+++++||+|++|++++ ||||||++++++ |. + .+.. . .. ..+..| +.+.
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag----G~-i-~g~~-----~---~~----~~~~~~--v~q~~~~~ 507 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----GQ-V-DGFP-----T---QE----ECRTVY--VEHDIDGT 507 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH----TC-S-TTCC-----C---TT----TSCEEE--TTCCCCCC
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC----CC-c-CCCc-----c---cc----ceeEEE--Eccccccc
Confidence 357889999999999997 999999999863 11 1 1100 0 00 000001 0111
Q ss_pred h--hhHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCC-cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 129 F--GSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFG-GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 129 f--~~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~-~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta 205 (264)
+ -++++.+... ... . ...+..++..+|+. +..++++.+||||||||++|||+++ .+|+++||||||+
T Consensus 508 ~~~ltv~e~l~~~-~~~--~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~----~~P~lLLLDEPTs 577 (986)
T 2iw3_A 508 HSDTSVLDFVFES-GVG--T---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVL----RNADILLLDEPTN 577 (986)
T ss_dssp CTTSBHHHHHHTT-CSS--C---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHH----TTCSEEEEESTTT
T ss_pred ccCCcHHHHHHHh-hcC--H---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEECCcc
Confidence 0 1344443321 000 1 34456677788995 6788999999999999999998875 6889999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH-hhccceeEEEeeCCeEE
Q psy17516 206 ALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF-SNANVIFRTKFVDGNSN 255 (264)
Q Consensus 206 ~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~-~~ad~l~~v~~~~g~s~ 255 (264)
+||+.++..+.++|++ .+.++|+||||...+ ..||+++- |++|...
T Consensus 578 ~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~--L~~G~iv 624 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIIN--YEGLKLR 624 (986)
T ss_dssp TCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEE--EETTEEE
T ss_pred CCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEE--EECCeee
Confidence 9999999999999998 578999999998877 57999988 6788753
No 62
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=2.2e-23 Score=214.16 Aligned_cols=95 Identities=19% Similarity=0.266 Sum_probs=81.5
Q ss_pred HHHhHHHHcCCCc-c-cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEE
Q psy17516 152 ILDGLEVNVAFGG-L-WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFI 229 (264)
Q Consensus 152 ~~~~l~~~v~l~~-~-~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~I 229 (264)
....++..+|+.+ . .++++.+|||||||||+|||++ +.+|+++||||||++||+.+...+.+.|+++ ++++|
T Consensus 879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL----~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVI 952 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGT----WQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVI 952 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHH----TTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEE
T ss_pred HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHH----HhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEE
Confidence 4556777889975 3 5788999999999999999876 5789999999999999999999999999876 46899
Q ss_pred EEEeCcchH-hhccceeEEEeeCCeE
Q psy17516 230 IVSLKEGMF-SNANVIFRTKFVDGNS 254 (264)
Q Consensus 230 iVTH~~~~~-~~ad~l~~v~~~~g~s 254 (264)
+||||...+ ..||++|- |.+|..
T Consensus 953 iISHD~e~v~~l~DrViv--L~~G~I 976 (986)
T 2iw3_A 953 IITHSAEFTKNLTEEVWA--VKDGRM 976 (986)
T ss_dssp EECSCHHHHTTTCCEEEC--CBTTBC
T ss_pred EEECCHHHHHHhCCEEEE--EECCEE
Confidence 999998876 57999998 668854
No 63
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.87 E-value=7.7e-22 Score=162.11 Aligned_cols=93 Identities=29% Similarity=0.405 Sum_probs=81.6
Q ss_pred ccccccCCCCHHHHHHHHHHH--HHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhc
Q psy17516 165 LWKESLGELSGGQRSLVALSL--VLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~--~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~a 241 (264)
..++++.+||||||||++||. ++|++++.+|+++||||||++||+.++..+.++|+++.+ +.++|+|||+......|
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~ 129 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 129 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhC
Confidence 457889999999999999986 445678899999999999999999999999999999764 67899999999878899
Q ss_pred cceeEEEeeCCeEEEE
Q psy17516 242 NVIFRTKFVDGNSNVT 257 (264)
Q Consensus 242 d~l~~v~~~~g~s~i~ 257 (264)
|+++.+.-++|.|+|.
T Consensus 130 d~ii~l~~~~g~s~~~ 145 (148)
T 1f2t_B 130 DHVIRISLENGSSKVE 145 (148)
T ss_dssp SEEEEEEEETTEEEEE
T ss_pred CEEEEEEcCCCeEEEE
Confidence 9999866578999765
No 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=5e-22 Score=203.41 Aligned_cols=93 Identities=23% Similarity=0.289 Sum_probs=78.5
Q ss_pred HhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEE
Q psy17516 154 DGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIV 231 (264)
Q Consensus 154 ~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiV 231 (264)
..++..+|+.. ...+++.+|||||||||+|||+|+. -..+|++|||||||+|||+..+..+.++|+++.+ +.++|+|
T Consensus 786 ~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~-~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI 864 (916)
T 3pih_A 786 LQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK-RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVI 864 (916)
T ss_dssp HHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS-CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45566788865 4578999999999999999998742 0112579999999999999999999999999864 7899999
Q ss_pred EeCcchHhhccceeEE
Q psy17516 232 SLKEGMFSNANVIFRT 247 (264)
Q Consensus 232 TH~~~~~~~ad~l~~v 247 (264)
|||..++..||+++-+
T Consensus 865 ~HdL~~i~~ADrIivL 880 (916)
T 3pih_A 865 EHNLDVIKNADHIIDL 880 (916)
T ss_dssp CCCHHHHTTCSEEEEE
T ss_pred eCCHHHHHhCCEEEEe
Confidence 9999999999999983
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.85 E-value=1.9e-21 Score=182.00 Aligned_cols=78 Identities=27% Similarity=0.360 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCC--CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEe-
Q psy17516 173 LSGGQRSLVALSLVLAMLLFKPA--PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKF- 249 (264)
Q Consensus 173 LSGGekqrvaiA~~la~~l~~~~--~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~- 249 (264)
||||||||++||++++ .+| +++||||||++||+.....+.++|++++++.|+|+|||++.++..||+++-+.-
T Consensus 296 lSgGe~qrl~lA~~l~----~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTV----LGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHH----HCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHH----hCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEe
Confidence 6999999999998764 577 999999999999999999999999999878999999999999999999998522
Q ss_pred -eCCeE
Q psy17516 250 -VDGNS 254 (264)
Q Consensus 250 -~~g~s 254 (264)
.+|..
T Consensus 372 ~~~G~~ 377 (415)
T 4aby_A 372 VEDGRT 377 (415)
T ss_dssp EETTEE
T ss_pred ccCCce
Confidence 57753
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.85 E-value=1.3e-21 Score=200.25 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=79.3
Q ss_pred HhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCC--CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEE
Q psy17516 154 DGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKP--APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFI 229 (264)
Q Consensus 154 ~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~--~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~I 229 (264)
..++..+|+.. ..++++.+|||||||||+||++++ .+| |++|||||||+|||+.++..++++|+++.+ +.++|
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~---~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELH---RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHS---SCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHh---cCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 35667889987 778999999999999999998864 232 599999999999999999999999999864 78999
Q ss_pred EEEeCcchHhhccceeE
Q psy17516 230 IVSLKEGMFSNANVIFR 246 (264)
Q Consensus 230 iVTH~~~~~~~ad~l~~ 246 (264)
+|||+...+..||+++-
T Consensus 903 visHdl~~i~~aDrIiv 919 (972)
T 2r6f_A 903 VIEHNLDVIKTADYIID 919 (972)
T ss_dssp EECCCHHHHTTCSEEEE
T ss_pred EEcCCHHHHHhCCEEEE
Confidence 99999999999999988
No 67
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=2.9e-22 Score=203.70 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=79.3
Q ss_pred HHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCC---CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCe
Q psy17516 153 LDGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKP---APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQ 227 (264)
Q Consensus 153 ~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~---~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q 227 (264)
...++..+|+.. ..++++.+|||||||||+||+++ +.+ |++|||||||++||+..+..+.++|+++.+ +.+
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL----~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~t 785 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELSGGEAQRIKLATEL----RRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNT 785 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTT----SSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHH----HhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 355677888876 46899999999999999998875 443 799999999999999999999999999864 789
Q ss_pred EEEEEeCcchHhhccceeE
Q psy17516 228 FIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 228 ~IiVTH~~~~~~~ad~l~~ 246 (264)
+|+||||...+..||+++-
T Consensus 786 VIvisHdl~~i~~aDrii~ 804 (842)
T 2vf7_A 786 VIAVEHKMQVVAASDWVLD 804 (842)
T ss_dssp EEEECCCHHHHTTCSEEEE
T ss_pred EEEEcCCHHHHHhCCEEEE
Confidence 9999999999999999988
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.84 E-value=2.5e-21 Score=198.54 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=78.9
Q ss_pred HhHHHHcCCCc-ccccccCCCCHHHHHHHHHHHHHHHhhcCC--CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEE
Q psy17516 154 DGLEVNVAFGG-LWKESLGELSGGQRSLVALSLVLAMLLFKP--APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFI 229 (264)
Q Consensus 154 ~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~~la~~l~~~--~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~I 229 (264)
..++..+|+.. ..++++.+|||||||||+||++++ .+| |++|||||||+|||+..+..+.++|+++.+ +.++|
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~---~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQ---KRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHS---SCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHH---hCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 35667788876 678999999999999999998864 232 699999999999999999999999999864 78999
Q ss_pred EEEeCcchHhhccceeE
Q psy17516 230 IVSLKEGMFSNANVIFR 246 (264)
Q Consensus 230 iVTH~~~~~~~ad~l~~ 246 (264)
+|||+...++.||+++-
T Consensus 921 visHdl~~i~~aDrIiv 937 (993)
T 2ygr_A 921 VIEHNLDVIKTSDWIID 937 (993)
T ss_dssp EECCCHHHHTTCSEEEE
T ss_pred EEcCCHHHHHhCCEEEE
Confidence 99999999999999988
No 69
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=3.6e-20 Score=170.30 Aligned_cols=98 Identities=28% Similarity=0.355 Sum_probs=86.0
Q ss_pred CCCcccccccCCCCHHHHHHHHHHHH--HHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch
Q psy17516 161 AFGGLWKESLGELSGGQRSLVALSLV--LAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM 237 (264)
Q Consensus 161 ~l~~~~~~~~~~LSGGekqrvaiA~~--la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~ 237 (264)
.+.+..++++.+||||||||++||+. +|++++.+|+++||||||++||+..+..+.++|+++.+ +.|+|+|||+..+
T Consensus 237 ~~~~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 237 VVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp EEETTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred eecccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 34456788999999999999988753 45678889999999999999999999999999998754 6799999999999
Q ss_pred HhhccceeEEEeeCCeEEEEE
Q psy17516 238 FSNANVIFRTKFVDGNSNVTR 258 (264)
Q Consensus 238 ~~~ad~l~~v~~~~g~s~i~~ 258 (264)
+..||+++.+...+|.|+|..
T Consensus 317 ~~~~d~~~~l~~~~g~s~v~~ 337 (339)
T 3qkt_A 317 KDAADHVIRISLENGSSKVEV 337 (339)
T ss_dssp GGGCSEEEEEEEETTEEEEEE
T ss_pred HHhCCEEEEEEecCCccEEEE
Confidence 999999999988999998864
No 70
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7.1e-22 Score=189.31 Aligned_cols=168 Identities=12% Similarity=0.012 Sum_probs=115.1
Q ss_pred HHHHHHHHHhhcccccccccchhhHHHHHhhhhcccccceeeeccceee------chhhHHHHhhhhhc--cch-h-HHH
Q psy17516 28 AQLSLRNEENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKK-S-IVE 97 (264)
Q Consensus 28 a~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~-~-~~~ 97 (264)
.+.+++++.++|+ ++||++++|++++ ||||||+++++++. ..| . +++
T Consensus 117 ~mi~~~nl~~~y~-----------------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~v 173 (460)
T 2npi_A 117 TMKYIYNLHFMLE-----------------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYI 173 (460)
T ss_dssp THHHHHHHHHHHH-----------------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEE
T ss_pred chhhhhhhhehhh-----------------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEE
Confidence 4678999999996 4899999999997 99999999997764 334 3 433
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHhh--cC---CCcCC---C--C---CCchhhHHHhHHHHcCCCc
Q psy17516 98 SDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLL--LP---GSQAK---L--S---PPAGKDILDGLEVNVAFGG 164 (264)
Q Consensus 98 ~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~vf~~L--~~---g~~~~---l--~---~~~~~~~~~~l~~~v~l~~ 164 (264)
++ + ..+.++++||.. ++ ..+.. + . .....+....++..+|+.+
T Consensus 174 dg-~-----------------------~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~ 229 (460)
T 2npi_A 174 NL-D-----------------------PQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLER 229 (460)
T ss_dssp EC-C-----------------------TTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSS
T ss_pred cC-C-----------------------ccCCeeeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCc
Confidence 33 0 012233333321 00 00100 0 0 0001122334555678877
Q ss_pred ccccccCCCCHHHHHHHHHHHH--HHHhhcCCCCE----EEeec-CCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc-
Q psy17516 165 LWKESLGELSGGQRSLVALSLV--LAMLLFKPAPL----YILDE-VDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG- 236 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~--la~~l~~~~~i----lllDE-Pta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~- 236 (264)
..+ +.+||||||||++|||+ ++ .+|++ +|||| ||++||+. ...+.++++++ +.++|+|||+..
T Consensus 230 ~~~--~~~LSgGq~qrlalAra~rL~----~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~ 300 (460)
T 2npi_A 230 INE--NKDLYLECISQLGQVVGQRLH----LDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETD 300 (460)
T ss_dssp GGG--CHHHHHHHHHHHHHHHHHHHH----HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSC
T ss_pred ccc--hhhhhHHHHHHHHHHHHHHhc----cCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCch
Confidence 655 88999999999999998 64 68899 99999 99999999 66777777664 557999999977
Q ss_pred -hH-----hhccc-----eeEEEee-CCe
Q psy17516 237 -MF-----SNANV-----IFRTKFV-DGN 253 (264)
Q Consensus 237 -~~-----~~ad~-----l~~v~~~-~g~ 253 (264)
+. ..||+ ++. |. +|.
T Consensus 301 ~l~~~~~~~~~dr~~~~~vi~--l~k~G~ 327 (460)
T 2npi_A 301 PLWEKVKKTFGPELGNNNIFF--IPKLDG 327 (460)
T ss_dssp THHHHHHHHHHHHHCGGGEEE--ECCCTT
T ss_pred hhhHHHHHHhcccccCCEEEE--EeCCCc
Confidence 33 68999 777 66 664
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=6e-20 Score=152.89 Aligned_cols=74 Identities=5% Similarity=0.022 Sum_probs=62.2
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH----------------HHHHHHHHHHhh-cCCeEEEE
Q psy17516 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH----------------TQNIGQMLKRHF-KTSQFIIV 231 (264)
Q Consensus 169 ~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~----------------~~~i~~ll~~~~-~~~q~IiV 231 (264)
.....|||||||++||+++ ..+|++++|||||++||+.+ ...+.++|+++. ++.++|+|
T Consensus 80 ~~~~~s~g~~qrv~iAral----~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~v 155 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAKDY----HCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYI 155 (171)
T ss_dssp SCCCSHHHHHHHHHHHHHT----TCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHc----CCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEE
Confidence 3456699999999998875 57899999999999999994 478888887765 37889999
Q ss_pred EeCcchHhhccceeE
Q psy17516 232 SLKEGMFSNANVIFR 246 (264)
Q Consensus 232 TH~~~~~~~ad~l~~ 246 (264)
||+...+..+++++.
T Consensus 156 tH~~~~~~~~~~~~~ 170 (171)
T 4gp7_A 156 LNSPEEVEEVVFERQ 170 (171)
T ss_dssp ECSHHHHHHEEEEEE
T ss_pred eCCHHHhhhhhhccC
Confidence 999998888887653
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.77 E-value=8.4e-19 Score=163.12 Aligned_cols=86 Identities=20% Similarity=0.328 Sum_probs=76.2
Q ss_pred ccccCCCCHHHHHHHHHHHHHH--HhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhccc
Q psy17516 167 KESLGELSGGQRSLVALSLVLA--MLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANV 243 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la--~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~ 243 (264)
++++.+|||||||||+||++++ .++..+|+++||||||++||+.++..++++|+++.+ +.++|+|||+...++.||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 5789999999999999999876 334578999999999999999999999999999864 6789999999999999999
Q ss_pred eeEEEeeCCeE
Q psy17516 244 IFRTKFVDGNS 254 (264)
Q Consensus 244 l~~v~~~~g~s 254 (264)
++- |.+|..
T Consensus 354 ~~~--l~~G~i 362 (365)
T 3qf7_A 354 KLR--ITGGVV 362 (365)
T ss_dssp EEE--EETTEE
T ss_pred EEE--EECCEE
Confidence 988 668864
No 73
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.71 E-value=4.1e-17 Score=151.60 Aligned_cols=90 Identities=29% Similarity=0.363 Sum_probs=77.6
Q ss_pred cccCCCCHHHHHHHHHHH--HHHHhhcCC-CCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccce
Q psy17516 168 ESLGELSGGQRSLVALSL--VLAMLLFKP-APLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVI 244 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~--~la~~l~~~-~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l 244 (264)
.++..|||||+||++||+ ++|++++.+ ||++||||||++||+..+..+.++|+++..+.|+|+|||++.+...||++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEE
Confidence 567899999999998875 445556788 99999999999999999999999999876667999999999888899999
Q ss_pred eEEEeeCCeEEEE
Q psy17516 245 FRTKFVDGNSNVT 257 (264)
Q Consensus 245 ~~v~~~~g~s~i~ 257 (264)
|.+.-+.|.|.|.
T Consensus 356 ~~l~k~~~~s~v~ 368 (371)
T 3auy_A 356 INVKKDGNVSKVK 368 (371)
T ss_dssp EEEEESSSCEEEE
T ss_pred EEEEecCCeEEEE
Confidence 9976567888664
No 74
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.70 E-value=6.7e-17 Score=156.37 Aligned_cols=81 Identities=26% Similarity=0.344 Sum_probs=73.0
Q ss_pred cccccccCCC-CHHHHHHHHHHHHHHHhhcCCC--CEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhh
Q psy17516 164 GLWKESLGEL-SGGQRSLVALSLVLAMLLFKPA--PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSN 240 (264)
Q Consensus 164 ~~~~~~~~~L-SGGekqrvaiA~~la~~l~~~~--~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ 240 (264)
+...+++..| ||||+|||+||++++ .+| +++||||||+|||+.+...|.++|++++++.|+|+|||++.++..
T Consensus 388 ~~~~~~~~~l~SgG~~qrv~la~~l~----~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 388 GEELGPLSDVASGGELSRVMLAVSTV----LGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp TSCCCBSSSSSCSSHHHHHHHHHHHH----HCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred CCCcccHHhcCCHHHHHHHHHHHHHH----hCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 3445788998 999999999998764 577 999999999999999999999999998878899999999999999
Q ss_pred ccceeEEE
Q psy17516 241 ANVIFRTK 248 (264)
Q Consensus 241 ad~l~~v~ 248 (264)
||++|.+.
T Consensus 464 ~d~~~~~~ 471 (517)
T 4ad8_A 464 AHHHYKVE 471 (517)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 99999864
No 75
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.70 E-value=3.1e-17 Score=168.08 Aligned_cols=89 Identities=26% Similarity=0.350 Sum_probs=78.1
Q ss_pred hHHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCCCC--EEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEE
Q psy17516 155 GLEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKPAP--LYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFII 230 (264)
Q Consensus 155 ~l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~~~--illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~Ii 230 (264)
..+..+|+... .++++.+|||||+|||+||++++ +.|+ +|||||||++||+.++.++.++|+++.+ +.++|+
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~----~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIG----SGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHH----TTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHh----hCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45556888764 68999999999999999999875 4444 9999999999999999999999999875 689999
Q ss_pred EEeCcchHhhccceeEE
Q psy17516 231 VSLKEGMFSNANVIFRT 247 (264)
Q Consensus 231 VTH~~~~~~~ad~l~~v 247 (264)
||||..++..||+++-+
T Consensus 522 VtHd~~~~~~aD~ii~l 538 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDI 538 (916)
T ss_dssp ECCCHHHHHTCSEEEEE
T ss_pred EeCCHHHHHhCCEEEEE
Confidence 99999999999999883
No 76
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.68 E-value=4.8e-17 Score=166.61 Aligned_cols=89 Identities=25% Similarity=0.332 Sum_probs=78.6
Q ss_pred HHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCC-CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEE
Q psy17516 156 LEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKP-APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVS 232 (264)
Q Consensus 156 l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~-~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVT 232 (264)
.+..+|+... .++++.+|||||+|||+||++++ .++ |.+|||||||++||+....++.++|+++.+ +.++|+||
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~---~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVe 563 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIG---SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 563 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHT---TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHh---hCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3667899764 68999999999999999998875 233 689999999999999999999999999875 78999999
Q ss_pred eCcchHhhccceeEE
Q psy17516 233 LKEGMFSNANVIFRT 247 (264)
Q Consensus 233 H~~~~~~~ad~l~~v 247 (264)
||..++..||+++-+
T Consensus 564 Hdl~~i~~ADrIi~L 578 (972)
T 2r6f_A 564 HDEDTMLAADYLIDI 578 (972)
T ss_dssp CCHHHHHSCSEEEEE
T ss_pred cCHHHHHhCCEEEEe
Confidence 999999999999883
No 77
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.67 E-value=7.2e-17 Score=165.74 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=78.4
Q ss_pred HHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCC-CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEE
Q psy17516 156 LEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKP-APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVS 232 (264)
Q Consensus 156 l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~-~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVT 232 (264)
.+..+|+... .++++.+|||||+|||+||++++ ..+ |.+|||||||++||+....++.++|+++.+ +.++|+||
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~---~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVe 580 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIG---SGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVE 580 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHT---TCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHh---hCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEEC
Confidence 3567888765 68999999999999999998875 233 689999999999999999999999999864 78999999
Q ss_pred eCcchHhhccceeEE
Q psy17516 233 LKEGMFSNANVIFRT 247 (264)
Q Consensus 233 H~~~~~~~ad~l~~v 247 (264)
||..++..||+++-+
T Consensus 581 Hdl~~i~~ADrIi~L 595 (993)
T 2ygr_A 581 HDEDTIEHADWIVDI 595 (993)
T ss_dssp CCHHHHHTCSEEEEE
T ss_pred CCHHHHHhCCEEEEe
Confidence 999999999999883
No 78
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.64 E-value=4.2e-16 Score=158.54 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=78.0
Q ss_pred HHHHcCCCcc-cccccCCCCHHHHHHHHHHHHHHHhhcCCC--CEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEE
Q psy17516 156 LEVNVAFGGL-WKESLGELSGGQRSLVALSLVLAMLLFKPA--PLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIV 231 (264)
Q Consensus 156 l~~~v~l~~~-~~~~~~~LSGGekqrvaiA~~la~~l~~~~--~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiV 231 (264)
.+..+|+... .++++.+|||||+|||+||++++ ..| .+|||||||++||+....++.++|+++.. +.++|+|
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~----~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvV 437 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLY----SNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVV 437 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTT----TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHh----hCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4557899865 78999999999999999998764 455 59999999999999999999999999875 7899999
Q ss_pred EeCcchHhhccceeEE
Q psy17516 232 SLKEGMFSNANVIFRT 247 (264)
Q Consensus 232 TH~~~~~~~ad~l~~v 247 (264)
|||..++..||+++-+
T Consensus 438 eHdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 438 EHDLDVIRRADWLVDV 453 (842)
T ss_dssp CCCHHHHTTCSEEEEE
T ss_pred cCCHHHHHhCCEEEEe
Confidence 9999999999999883
No 79
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.55 E-value=6.2e-17 Score=139.64 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHh
Q psy17516 176 GQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFS 239 (264)
Q Consensus 176 GekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~ 239 (264)
|||||++|||+ ++.+|+++||||||++ ++..+.++|+++.++.++| ||||...++
T Consensus 108 Gq~qrv~lAra----L~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 108 VEVAPLAYMRG----RTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp EEEEEGGGGTT----CCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred chHHHHHHHHH----HhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 99999999876 5689999999999999 8889999999884466777 999976544
No 80
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.51 E-value=8.1e-17 Score=152.26 Aligned_cols=160 Identities=8% Similarity=0.039 Sum_probs=102.2
Q ss_pred hhcccccceeeeccc--------------------eee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhh
Q psy17516 59 KYLGSMSSFSVKVGA--------------------MVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEEL 110 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge--------------------~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l 110 (264)
+...+++||+|++|+ +++ ||||||++++.++. ++|.+...+.. +.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~-----~t-- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE-----VT-- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCee-----cc--
Confidence 345567999999999 776 99999999997753 35555544421 11
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHh-hcCCCc----CCCCCCchhhHHHhHHHHcCCCcccccccCCCCHH--HHHHHHH
Q psy17516 111 DEKKKIALREAWLKVNTDFGSIFSL-LLPGSQ----AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGG--QRSLVAL 183 (264)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~f~~vf~~-L~~g~~----~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGG--ekqrvai 183 (264)
+ . +.+|+. .++..+ ..+.. .......++..+++.+... .+. |||| |+||++|
T Consensus 109 --------~-------~--~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~~~~-~~~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 --------M-------E--RHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYEYDF-FII-ISATRFKKNDIDI 167 (413)
T ss_dssp --------C-------C--CEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGGCSE-EEE-EESSCCCHHHHHH
T ss_pred --------e-------e--EEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCccCC-eEE-eCCCCccHHHHHH
Confidence 0 0 112221 011111 01100 1123455666778766533 334 9999 9999999
Q ss_pred HHHHHH------hhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh-----c-----CCeEEEEEeCcc---hHhhccce
Q psy17516 184 SLVLAM------LLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF-----K-----TSQFIIVSLKEG---MFSNANVI 244 (264)
Q Consensus 184 A~~la~------~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~-----~-----~~q~IiVTH~~~---~~~~ad~l 244 (264)
|++++. ...++|+++++||||++||+.++..+.++|+++. + ...|++.||... +-+.||++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 998864 1122789999999999999999999999998873 1 244667888755 44568877
Q ss_pred eE
Q psy17516 245 FR 246 (264)
Q Consensus 245 ~~ 246 (264)
..
T Consensus 248 ~~ 249 (413)
T 1tq4_A 248 IS 249 (413)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.49 E-value=3e-14 Score=132.44 Aligned_cols=81 Identities=23% Similarity=0.210 Sum_probs=67.0
Q ss_pred ccccC-CCCHHHHHHHHHHHHHHHh-----hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhh
Q psy17516 167 KESLG-ELSGGQRSLVALSLVLAML-----LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSN 240 (264)
Q Consensus 167 ~~~~~-~LSGGekqrvaiA~~la~~-----l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ 240 (264)
++++. .|||||+||++||+++|.+ ...+||++||||||++||+..+..+.++|.++. .+||++||.. . .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th~~-~--~ 333 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTELA-P--G 333 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESSCC-T--T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEecc-c--c
Confidence 45677 8999999999999988621 116889999999999999999999999998875 5677888853 3 8
Q ss_pred ccceeEEEeeCCeE
Q psy17516 241 ANVIFRTKFVDGNS 254 (264)
Q Consensus 241 ad~l~~v~~~~g~s 254 (264)
||+++. +++|..
T Consensus 334 ~~~i~~--l~~G~i 345 (359)
T 2o5v_A 334 AALTLR--AQAGRF 345 (359)
T ss_dssp CSEEEE--EETTEE
T ss_pred CCEEEE--EECCEE
Confidence 999988 568864
No 82
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.47 E-value=3.4e-14 Score=145.81 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=91.7
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
.++..++++|++++|++++ |||||||++++.+. +.. +.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~------~~a----------------------------q~g~ 704 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT------IMA----------------------------QIGS 704 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH------HHH----------------------------HHTC
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH------HHh----------------------------hcCc
Confidence 3678899999999999987 99999999874210 000 0110
Q ss_pred HHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH
Q psy17516 132 IFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211 (264)
Q Consensus 132 vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~ 211 (264)
..|...+.+. ....+...+|..+...+.++.+|+|++|++.|+++ +.+|+++|||||++|||+..
T Consensus 705 ----~vpa~~~~i~------~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-----a~~p~LlLLDEP~~GlD~~~ 769 (918)
T 3thx_B 705 ----YVPAEEATIG------IVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-----ATSQSLVILDELGRGTSTHD 769 (918)
T ss_dssp ----CBSSSEEEEE------CCSEEEEEC----------CCHHHHHHHHHHHHHH-----CCTTCEEEEESTTTTSCHHH
T ss_pred ----cccchhhhhh------HHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-----ccCCCEEEEeCCCCCCCHHH
Confidence 0111111100 01122234455555667788999999999999765 47899999999999999999
Q ss_pred HHHHH-HHHHHhh--cCCeEEEEEeCcchHhhccce
Q psy17516 212 TQNIG-QMLKRHF--KTSQFIIVSLKEGMFSNANVI 244 (264)
Q Consensus 212 ~~~i~-~ll~~~~--~~~q~IiVTH~~~~~~~ad~l 244 (264)
...+. .+++.+. .+.++|++||+..+.+.||+.
T Consensus 770 ~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 770 GIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 99987 6777664 378899999999998888864
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.44 E-value=1.9e-13 Score=132.39 Aligned_cols=84 Identities=7% Similarity=-0.114 Sum_probs=70.5
Q ss_pred cCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHH-----HHHHHHHHHHHhhc-CCeEEEEEe
Q psy17516 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS-----HTQNIGQMLKRHFK-TSQFIIVSL 233 (264)
Q Consensus 160 v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~-----~~~~i~~ll~~~~~-~~q~IiVTH 233 (264)
.|+....+.+|.+|||||+||+++|+++ ..+|+++++| ||++||.. .+..+.++++.+.+ +.++|+|||
T Consensus 341 ~g~~~~~~~~p~~LS~g~~q~~~~a~~l----~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh 415 (525)
T 1tf7_A 341 QNLLKIVCAYPESAGLEDHLQIIKSEIN----DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNT 415 (525)
T ss_dssp TTSEEECCCCGGGSCHHHHHHHHHHHHH----TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHH----hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 4555666788999999999999999875 4788999999 99999999 99999999988764 688999999
Q ss_pred Cc----------chH-hhccceeEEE
Q psy17516 234 KE----------GMF-SNANVIFRTK 248 (264)
Q Consensus 234 ~~----------~~~-~~ad~l~~v~ 248 (264)
+. ..+ ..||+++-+.
T Consensus 416 ~~~~~~~~~~~~~~l~~~~D~vi~L~ 441 (525)
T 1tf7_A 416 SDQFMGAHSITDSHISTITDTIILLQ 441 (525)
T ss_dssp CSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cccccCcccccCcccceeeeEEEEEE
Confidence 97 444 5799998643
No 84
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.43 E-value=3.5e-16 Score=142.52 Aligned_cols=133 Identities=8% Similarity=-0.035 Sum_probs=82.7
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh-hhHH
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDF-GSIF 133 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f-~~vf 133 (264)
.++++||+|++|++++ ||||||+++|+++. +|.++..... . ..-| +++.
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q----------------------~-~~lf~~ti~ 170 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANH----------------------K-SHFWLASLA 170 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGT----------------------T-SGGGGGGGT
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecC----------------------c-cccccccHH
Confidence 4557999999999997 99999999997766 4443221100 0 0001 1222
Q ss_pred H-hhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHH
Q psy17516 134 S-LLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT 212 (264)
Q Consensus 134 ~-~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~ 212 (264)
+ ++..+. +..+.+......+ +++..+ +..|||||||| || +++++||++| |++||+.+.
T Consensus 171 ~~ni~~~~-------~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR---AR----All~~p~iLl----Ts~LD~~~~ 229 (305)
T 2v9p_A 171 DTRAALVD-------DATHACWRYFDTY-LRNALD--GYPVSIDRKHK---AA----VQIKAPPLLV----TSNIDVQAE 229 (305)
T ss_dssp TCSCEEEE-------EECHHHHHHHHHT-TTGGGG--TCCEECCCSSC---CC----CEECCCCEEE----EESSCSTTC
T ss_pred HHhhccCc-------cccHHHHHHHHHH-hHccCC--ccCcCHHHHHH---HH----HHhCCCCEEE----ECCCCHHHH
Confidence 1 111110 0011222222222 344333 78999999999 44 4678999999 999999988
Q ss_pred HHHHHHHHHhhcCCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 213 QNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 213 ~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
..+.. +||+..++..||++ - |++|..
T Consensus 230 ~~i~~-------------ltH~~~~~~~aD~i-v--l~~G~i 255 (305)
T 2v9p_A 230 DRYLY-------------LHSRVQTFRFEQPC-T--DESGEQ 255 (305)
T ss_dssp GGGGG-------------GTTTEEEEECCCCC-C--CC---C
T ss_pred HHHHH-------------HhCCHHHHHhCCEE-E--EeCCEE
Confidence 88752 29999999999999 5 677753
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.43 E-value=2.2e-13 Score=140.08 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=93.2
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSI 132 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~v 132 (264)
++..++++|++++|++++ |||||||++++... + . .+.|.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~------~---------------------~-------aq~G~- 693 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIV------L---------------------M-------AQIGC- 693 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHH------H---------------------H-------HHHTC-
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHH------H---------------------H-------HhcCC-
Confidence 578889999999999987 99999999874210 0 0 00110
Q ss_pred HHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHH
Q psy17516 133 FSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT 212 (264)
Q Consensus 133 f~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~ 212 (264)
..|...+.+. ....+..++|..+ .....+|+|+.+++.+|+++.. +.+|+++|||||++|||+...
T Consensus 694 ---~vpa~~~~~~------~~d~i~~~ig~~d---~l~~~lStf~~e~~~~a~il~~--a~~~sLlLLDEp~~GlD~~~~ 759 (934)
T 3thx_A 694 ---FVPCESAEVS------IVDCILARVGAGD---SQLKGVSTFMAEMLETASILRS--ATKDSLIIIDELGRGTSTYDG 759 (934)
T ss_dssp ---CBSEEEEEEE------CCSEEEEECC------------CHHHHHHHHHHHHHHH--CCTTCEEEEESCSCSSCHHHH
T ss_pred ---ccccccccch------HHHHHHHhcCchh---hHHHhHhhhHHHHHHHHHHHHh--ccCCcEEEEeCCCCCCCHHHH
Confidence 0011000000 0111222334332 3345788888888888887642 678899999999999999998
Q ss_pred HHH-HHHHHHhhc--CCeEEEEEeCcchHhhccceeEEEeeCCeE
Q psy17516 213 QNI-GQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRTKFVDGNS 254 (264)
Q Consensus 213 ~~i-~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v~~~~g~s 254 (264)
..+ ..++..+.+ +.++|++||+.++.+.||+++. +.+|..
T Consensus 760 ~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~--v~ng~v 802 (934)
T 3thx_A 760 FGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT--VNNLHV 802 (934)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTT--EEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccce--eEeeEE
Confidence 888 556666653 6889999999999999999876 334443
No 86
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.41 E-value=1.4e-13 Score=115.60 Aligned_cols=73 Identities=7% Similarity=-0.037 Sum_probs=60.1
Q ss_pred ccccccCCCCHHHHHHHHHHHH-----HHHhhcCCCCEEEeec--CCCCCCHHHHHHHHHHHHHhhcCCeEEEEEe---C
Q psy17516 165 LWKESLGELSGGQRSLVALSLV-----LAMLLFKPAPLYILDE--VDAALDLSHTQNIGQMLKRHFKTSQFIIVSL---K 234 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~-----la~~l~~~~~illlDE--Pta~LD~~~~~~i~~ll~~~~~~~q~IiVTH---~ 234 (264)
..++++.+||||||||++||++ + +.+|+++++|| ||++||+.....+.+++.+ .+.++|++|| +
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l----~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~ 142 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAK----KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDV 142 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHH----HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCC
T ss_pred cccccccCcCHHHHHHHHHHhhcccccc----ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCC
Confidence 4567889999999999999985 5 37889999999 9999999999999998876 3566888886 5
Q ss_pred cchH-hhccc
Q psy17516 235 EGMF-SNANV 243 (264)
Q Consensus 235 ~~~~-~~ad~ 243 (264)
...+ ..||+
T Consensus 143 ~~~~~~i~~r 152 (178)
T 1ye8_A 143 HPLVKEIRRL 152 (178)
T ss_dssp SHHHHHHHTC
T ss_pred chHHHHHHhc
Confidence 5554 45776
No 87
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.34 E-value=1.6e-14 Score=132.57 Aligned_cols=61 Identities=11% Similarity=-0.040 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCC-eEEEEEeCcchHhhccceeE
Q psy17516 175 GGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTS-QFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 175 GGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~-q~IiVTH~~~~~~~ad~l~~ 246 (264)
|||+||++||+++ ..+|+++++||||+. .+.++|+.+..+. ++|++||+......||+++.
T Consensus 225 gg~~~r~~la~aL----~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~ 286 (330)
T 2pt7_A 225 GNITSADCLKSCL----RMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLAN 286 (330)
T ss_dssp TTBCHHHHHHHHT----TSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHH
T ss_pred CChhHHHHHHHHh----hhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhhee
Confidence 8999999998764 578999999999982 3566777776554 68999999998899999876
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.34 E-value=4.7e-14 Score=136.65 Aligned_cols=151 Identities=8% Similarity=0.001 Sum_probs=93.2
Q ss_pred cccce-eeeccceee------chhhHHHHh--hhhhc--cchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q psy17516 63 SMSSF-SVKVGAMVK------APLRTLLFI--SMEAM--TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGS 131 (264)
Q Consensus 63 ~~v~~-~v~~Ge~~~------sGKSTLl~~--l~~l~--~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v~~~f~~ 131 (264)
++++| .|++|++++ ||||||+++ +.++. ..+.+++.+.+ .. ...... .+.+++
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~--------~~-~~~~~~-------~~~~g~ 92 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE--------TP-QDIIKN-------ARSFGW 92 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--------CH-HHHHHH-------HGGGTC
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC--------CH-HHHHHH-------HHHcCC
Confidence 34999 999999997 999999988 45543 34555555532 00 011111 234566
Q ss_pred HHHhhcCCCcC-CCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC----
Q psy17516 132 IFSLLLPGSQA-KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA---- 206 (264)
Q Consensus 132 vf~~L~~g~~~-~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~---- 206 (264)
+||........ ........ ....++..+++.+..++.+.+||||| |+++++||||+.
T Consensus 93 ~~q~~~~~~~l~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~LS~g~-----------------~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 93 DLAKLVDEGKLFILDASPDP-EGQEVVGGFDLSALIERINYAIQKYR-----------------ARRVSIDSVTSVFQQY 154 (525)
T ss_dssp CHHHHHHTTSEEEEECCCCS-SCCSCCSSHHHHHHHHHHHHHHHHHT-----------------CSEEEEECSTTTSTTT
T ss_pred ChHHhhccCcEEEEecCccc-chhhhhcccCHHHHHHHHHHHHHHcC-----------------CCEEEECCHHHHHHhc
Confidence 66653211000 00000000 00111223344445556667777765 579999999984
Q ss_pred -CCHHHHHHHHHHHHHhhc-CCeEEEEEeCcch---------Hhh-ccceeEE
Q psy17516 207 -LDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGM---------FSN-ANVIFRT 247 (264)
Q Consensus 207 -LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~---------~~~-ad~l~~v 247 (264)
||+..+..+.++++.+++ +.++|+|||+... ++. ||+++-+
T Consensus 155 ~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L 207 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVIL 207 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEE
Confidence 689999999999998864 7899999999876 344 9999874
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.34 E-value=1.7e-12 Score=116.13 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=54.6
Q ss_pred cccCCCCHHH-HHHHHHHHHHHHhhcCCCCEEEeecCCC---C---CCH-HHHHHHHHHHHHhhc--CCeEEEEEeCc--
Q psy17516 168 ESLGELSGGQ-RSLVALSLVLAMLLFKPAPLYILDEVDA---A---LDL-SHTQNIGQMLKRHFK--TSQFIIVSLKE-- 235 (264)
Q Consensus 168 ~~~~~LSGGe-kqrvaiA~~la~~l~~~~~illlDEPta---~---LD~-~~~~~i~~ll~~~~~--~~q~IiVTH~~-- 235 (264)
..+..+|.+| +|++. |++ +..+|+++|+||||+ + +|. .....+.+.|+++++ +.++|++||+.
T Consensus 125 ~~~~~~~~~~l~~~~~-a~~----~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~ 199 (296)
T 1cr0_A 125 DSFAEAETDRLLAKLA-YMR----SGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNP 199 (296)
T ss_dssp CCCCSCCHHHHHHHHH-HHH----HTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC--
T ss_pred CCCCCCCHHHHHHHHH-HHH----HhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcc
Confidence 3456789998 55555 554 357889999999999 5 455 677889999988864 78999999994
Q ss_pred ---------------------chHhhccceeEEE
Q psy17516 236 ---------------------GMFSNANVIFRTK 248 (264)
Q Consensus 236 ---------------------~~~~~ad~l~~v~ 248 (264)
.+...||+++.+.
T Consensus 200 ~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~ 233 (296)
T 1cr0_A 200 DKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 233 (296)
T ss_dssp ---------------CCC---CHHHHCSEEEEEE
T ss_pred ccccccccCCCCCHHHhcccHHhHhhCcEEEEEe
Confidence 3446799998743
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.31 E-value=1.4e-13 Score=124.98 Aligned_cols=143 Identities=12% Similarity=0.016 Sum_probs=86.7
Q ss_pred cccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhH-HHHHHHHHHHHHhhhhhhhH-
Q psy17516 63 SMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDE-KKKIALREAWLKVNTDFGSI- 132 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~-~~~~~~~~~~~~v~~~f~~v- 132 (264)
..+||++++|++++ ||||||+++++++. ..|.+.+.+.+ +..... .+...+.. ...++++
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d-----~~r~~a~~ql~~~~~-----~~~i~~v~ 160 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD-----TFRAAASDQLEIWAE-----RTGCEIVV 160 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC-----CSCHHHHHHHHHHHH-----HHTCEEEC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec-----ccchhHHHHHHHHHH-----hcCceEEE
Confidence 36899999999987 99999999886643 34455555532 211110 01111110 0112222
Q ss_pred ------------HHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC--EE
Q psy17516 133 ------------FSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP--LY 198 (264)
Q Consensus 133 ------------f~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~--il 198 (264)
++.+..+.... . + ..+...+|+.+..++.+.+|| +||++|||+ ++.+|+ ++
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~~---~---d--~~lldt~gl~~~~~~~~~eLS---kqr~~iara----l~~~P~e~lL 225 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEEG---Y---D--VVLCDTSGRLHTNYSLMEELI---ACKKAVGKI----VSGAPNEILL 225 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTT---C---S--EEEECCCCCSSCCHHHHHHHH---HHHHHHHTT----STTCCSEEEE
T ss_pred ecCCccCHHHHHHHHHHHHHHcC---C---c--chHHhcCCCCcchhHHHHHHH---HHHHHHHHh----hccCCCeeEE
Confidence 22221100000 0 0 112335677777778899999 999999876 467899 99
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCcch
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKEGM 237 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~~~ 237 (264)
++| ||++||+.+.. +++. .+.+.|++||-.++
T Consensus 226 vLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 226 VLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp EEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSC
T ss_pred EEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCC
Confidence 999 99999998653 3333 26789999996653
No 91
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.24 E-value=6.2e-16 Score=133.51 Aligned_cols=75 Identities=8% Similarity=0.055 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHH--HHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh--------cCCeEEEEEeCcc-hHh
Q psy17516 171 GELSGGQRSLVAL--SLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF--------KTSQFIIVSLKEG-MFS 239 (264)
Q Consensus 171 ~~LSGGekqrvai--A~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~--------~~~q~IiVTH~~~-~~~ 239 (264)
..|||||+||++| +.. +++++.+|++.+||||++++|..+...+.+.+.... .....|+|+|+.. .+.
T Consensus 121 ~~lsggq~qR~~i~~~~~-~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~ 199 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNA-LYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQ 199 (218)
T ss_dssp ECHHHHHHHTTCSSCCSC-EEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCc-EEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHH
Confidence 6889999999999 110 233578899999999999999988888877776532 3467899999855 446
Q ss_pred hccceeE
Q psy17516 240 NANVIFR 246 (264)
Q Consensus 240 ~ad~l~~ 246 (264)
.+++++.
T Consensus 200 ~~~~ii~ 206 (218)
T 1z6g_A 200 QLKNYLL 206 (218)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6776654
No 92
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.23 E-value=1.9e-12 Score=134.37 Aligned_cols=136 Identities=10% Similarity=0.061 Sum_probs=87.1
Q ss_pred hhcccccceeeec-------cceee------chhhHHHHhhhhhccchhHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy17516 59 KYLGSMSSFSVKV-------GAMVK------APLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKV 125 (264)
Q Consensus 59 ~~~~~~v~~~v~~-------Ge~~~------sGKSTLl~~l~~l~~~~~~~~~~~~~l~~~I~~l~~~~~~~~~~~~~~v 125 (264)
.++.++++|++++ |++++ |||||||+++ ++..- +
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------------~------ 815 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------------M------ 815 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------------H------
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------------H------
Confidence 5788999999987 89886 9999999988 54320 0
Q ss_pred hhhhh-hHHHhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCC
Q psy17516 126 NTDFG-SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVD 204 (264)
Q Consensus 126 ~~~f~-~vf~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPt 204 (264)
.++| +|++.-. .+... +.+..++|..+...+..+.+|+|+++ +++|++ ++.+|+++|||||+
T Consensus 816 -aqiG~~Vpq~~~-----~l~v~------d~I~~rig~~d~~~~~~stf~~em~~-~a~al~----la~~~sLlLLDEp~ 878 (1022)
T 2o8b_B 816 -AQMGCYVPAEVC-----RLTPI------DRVFTRLGASDRIMSGESTFFVELSE-TASILM----HATAHSLVLVDELG 878 (1022)
T ss_dssp -HTTTCCEESSEE-----EECCC------SBEEEECC---------CHHHHHHHH-HHHHHH----HCCTTCEEEEECTT
T ss_pred -hheeEEeccCcC-----CCCHH------HHHHHHcCCHHHHhhchhhhHHHHHH-HHHHHH----hCCCCcEEEEECCC
Confidence 1223 3443210 01000 01112344444444556788887775 676655 46899999999999
Q ss_pred CCCCHHHH-HHHHHHHHHhhc--CCeEEEEEeCcchHh-hccce
Q psy17516 205 AALDLSHT-QNIGQMLKRHFK--TSQFIIVSLKEGMFS-NANVI 244 (264)
Q Consensus 205 a~LD~~~~-~~i~~ll~~~~~--~~q~IiVTH~~~~~~-~ad~l 244 (264)
+|+|+... ..+..+|+.+.+ +.++|++||+.+... .||++
T Consensus 879 ~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 879 RGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCS
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcc
Confidence 99999885 446778888763 678999999988875 47765
No 93
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.22 E-value=5.1e-14 Score=119.96 Aligned_cols=73 Identities=5% Similarity=-0.057 Sum_probs=58.5
Q ss_pred HcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCC----CHHHHHHHHHHHHHhhc--CCeEEEEE
Q psy17516 159 NVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL----DLSHTQNIGQMLKRHFK--TSQFIIVS 232 (264)
Q Consensus 159 ~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~L----D~~~~~~i~~ll~~~~~--~~q~IiVT 232 (264)
.+|+....++++.+|| +++.+|++++||||++++ |+..+.++.++++++.+ +.++|+||
T Consensus 121 ~~gl~~~~~~~~~~lS---------------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vt 185 (207)
T 1znw_A 121 LAGARAIKKTMPEAVT---------------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVN 185 (207)
T ss_dssp HHHHHHHHHHCTTSEE---------------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEEC
T ss_pred HHHHHHHHHhcCCcEE---------------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEEC
Confidence 3455555666777777 356788999999999998 78899999999998863 67899999
Q ss_pred eCcchH-hhccceeE
Q psy17516 233 LKEGMF-SNANVIFR 246 (264)
Q Consensus 233 H~~~~~-~~ad~l~~ 246 (264)
|+...+ ..||+++-
T Consensus 186 Hdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 186 RRLESACAELVSLLV 200 (207)
T ss_dssp SSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 997765 57999876
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.21 E-value=9.3e-12 Score=107.21 Aligned_cols=58 Identities=5% Similarity=-0.065 Sum_probs=45.2
Q ss_pred cCCCCEEEeecCCCCCC-----HHHHHHHHHHHHHhhc-CCeEEEEEeCcchH----------hhc-cceeEEEe
Q psy17516 192 FKPAPLYILDEVDAALD-----LSHTQNIGQMLKRHFK-TSQFIIVSLKEGMF----------SNA-NVIFRTKF 249 (264)
Q Consensus 192 ~~~~~illlDEPta~LD-----~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~----------~~a-d~l~~v~~ 249 (264)
..+|+++++||||++|| +..+..+.++++.+.+ +.++|+|||+.... ..| |+++-+..
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 36789999999999997 6666668888888764 78999999997664 577 99988643
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.19 E-value=4e-12 Score=128.39 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecC---CCCCCHHHH-HHHHHHHHHhhcCCeEEEEEeCcchHhhc
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEV---DAALDLSHT-QNIGQMLKRHFKTSQFIIVSLKEGMFSNA 241 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEP---ta~LD~~~~-~~i~~ll~~~~~~~q~IiVTH~~~~~~~a 241 (264)
.+|+|+++++.+|+++. .+.+|+++||||| |++||.... ..+.+.|.+ .+.++|++||+......|
T Consensus 635 g~S~~~~e~~~la~il~--~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILK--EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp CCSHHHHHHHHHHHHHH--HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred cccHHHHHHHHHHHHHH--hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 57999999999998764 3789999999999 999999875 578888876 578899999998887766
No 96
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.18 E-value=3.5e-13 Score=125.24 Aligned_cols=143 Identities=12% Similarity=0.021 Sum_probs=86.8
Q ss_pred cccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhHHHHHHHHHhhhH-HHHHHHHHHHHHhhhhhhhHH
Q psy17516 63 SMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDRAKLLKVIEELDE-KKKIALREAWLKVNTDFGSIF 133 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~~~l~~~I~~l~~-~~~~~~~~~~~~v~~~f~~vf 133 (264)
..+||++++|++++ ||||||+++++++. ..|.+.+.+.+ +..... .+...+.. ...+++++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D-----~~r~~a~eql~~~~~-----r~~i~~v~ 217 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD-----TFRAAASDQLEIWAE-----RTGCEIVV 217 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC-----CSCHHHHHHHHHHHH-----HHTCEEEC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc-----ccccchhHHHHHHHH-----hcCeEEEE
Confidence 46899999999987 99999999886643 34455555532 211110 01111110 01122222
Q ss_pred -------------HhhcCCCcCCCCCCchhhHHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCC--EE
Q psy17516 134 -------------SLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP--LY 198 (264)
Q Consensus 134 -------------~~L~~g~~~~l~~~~~~~~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~--il 198 (264)
+.+..+... .. + ..+...+|+.+..++.+.+|| +||++|||++ ..+|+ ++
T Consensus 218 q~~~~~~p~~tv~e~l~~~~~~---~~---d--~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral----~~~P~e~lL 282 (359)
T 2og2_A 218 AEGDKAKAATVLSKAVKRGKEE---GY---D--VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIV----SGAPNEILL 282 (359)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHT---TC---S--EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHS----TTCCSEEEE
T ss_pred ecccccChhhhHHHHHHHHHhC---CC---H--HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHH----hcCCCceEE
Confidence 221100000 00 0 112335677777778899999 9999998875 57889 99
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCcch
Q psy17516 199 ILDEVDAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKEGM 237 (264)
Q Consensus 199 llDEPta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~~~ 237 (264)
+|| ||++||+.+.. +.+. .+.+.||+||-.++
T Consensus 283 vLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 283 VLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp EEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTC
T ss_pred EEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCccc
Confidence 999 99999998653 2332 26789999996554
No 97
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.18 E-value=1.7e-11 Score=124.46 Aligned_cols=73 Identities=4% Similarity=-0.075 Sum_probs=53.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHH-HHHHHHhhc--CCeEEEEEeCcchHhhcccee
Q psy17516 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI-GQMLKRHFK--TSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 169 ~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i-~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~ 245 (264)
..+.+|+|+++...+. . .+.+|+++|||||++|+|+.....+ ..+++.+.+ +.++|++||+......||++.
T Consensus 666 ~~stf~~e~~~~~~il---~--~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~ 740 (800)
T 1wb9_A 666 GRSTFMVEMTETANIL---H--NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME 740 (800)
T ss_dssp ----CHHHHHHHHHHH---H--HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHST
T ss_pred hhhhhhHHHHHHHHHH---H--hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhh
Confidence 3456788877644432 2 3688999999999999998777665 567777653 678999999999989999874
Q ss_pred E
Q psy17516 246 R 246 (264)
Q Consensus 246 ~ 246 (264)
+
T Consensus 741 ~ 741 (800)
T 1wb9_A 741 G 741 (800)
T ss_dssp T
T ss_pred c
Confidence 4
No 98
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.16 E-value=1.5e-13 Score=122.86 Aligned_cols=64 Identities=17% Similarity=0.093 Sum_probs=48.9
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchH
Q psy17516 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMF 238 (264)
Q Consensus 164 ~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~ 238 (264)
...+..+.+|||||+||+++||+++ .++++|||+++||+.. .++++.+.+..++|+|.|+-..+
T Consensus 90 ~~~~~~~~~LS~G~~qrv~iaRal~-------~lllldep~~gL~~lD----~~~l~~L~~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 90 QYEKFLKEEVNIARKKRIPDTRVHC-------CLYFISPTGHSLRPLD----LEFMKHLSKVVNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHSCTTCCSSCCCCSCCE-------EEEEECCCSSSCCHHH----HHHHHHHHTTSEEEEEETTGGGS
T ss_pred HHHhhhHHhcCcccchhhhhheeee-------eeEEEecCCCcCCHHH----HHHHHHHHhcCcEEEEEeccccC
Confidence 3456678899999999999988643 3999999999999987 33444444447888888876544
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.12 E-value=8.4e-11 Score=104.32 Aligned_cols=77 Identities=5% Similarity=-0.061 Sum_probs=56.7
Q ss_pred hHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC--CCCHHHH---HHHHHHHHHhhc--CCe
Q psy17516 155 GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA--ALDLSHT---QNIGQMLKRHFK--TSQ 227 (264)
Q Consensus 155 ~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta--~LD~~~~---~~i~~ll~~~~~--~~q 227 (264)
.++..+.+.+..++++..||+|+.+++. + ++.+|+++++|||++ ++|+.+. ..+++.|+.+.+ +.+
T Consensus 101 ~~~~~l~l~~~~~~~~~~ls~g~~~~i~---~----l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t 173 (279)
T 1nlf_A 101 AVADGLLIQPLIGSLPNIMAPEWFDGLK---R----AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS 173 (279)
T ss_dssp HHHHHEEECCCTTSCCCTTSHHHHHHHH---H----HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred hccCceEEeecCCCCcccCCHHHHHHHH---H----hcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence 3445566666677889999999988653 2 235789999999999 9998544 788888888753 789
Q ss_pred EEEEEeCcchH
Q psy17516 228 FIIVSLKEGMF 238 (264)
Q Consensus 228 ~IiVTH~~~~~ 238 (264)
+|+|||.....
T Consensus 174 vi~i~H~~~~~ 184 (279)
T 1nlf_A 174 IVFLHHASKGA 184 (279)
T ss_dssp EEEEEEC----
T ss_pred EEEEecCCCcc
Confidence 99999986543
No 100
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.07 E-value=2.3e-12 Score=117.42 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=42.4
Q ss_pred HHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 152 ILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 152 ~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
.+..++..++ .+..+..+..|||||+||+++|++ ++.+|+++|+|||++.+|+
T Consensus 157 ~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~a----l~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 157 ALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQ----VVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEE----EECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHH----hccCCCEEEECCccccCCc
Confidence 3445555666 555567788999999999999754 5789999999999999974
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.04 E-value=1.9e-10 Score=97.43 Aligned_cols=74 Identities=16% Similarity=0.067 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCC--EEEeecCCCCC--CHHHHHHHHHHHHHhhc--CCeEEEEEeCc--------c-
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAP--LYILDEVDAAL--DLSHTQNIGQMLKRHFK--TSQFIIVSLKE--------G- 236 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~--illlDEPta~L--D~~~~~~i~~ll~~~~~--~~q~IiVTH~~--------~- 236 (264)
..|+++.++.+.+.+.. .+|+ ++++||||+.+ |+.....+++.|+++++ +.++|++||+. .
T Consensus 103 ~~~~~~~~~~~~~~~~~----~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~ 178 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQK----LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFG 178 (235)
T ss_dssp SCCHHHHHHHHHHHHHH----HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------C
T ss_pred CCCHHHHHHHHHHHHHh----hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccc
Confidence 45999988877765432 4678 99999999888 99999999999988753 67888999987 2
Q ss_pred hHhhccceeEEEe
Q psy17516 237 MFSNANVIFRTKF 249 (264)
Q Consensus 237 ~~~~ad~l~~v~~ 249 (264)
+...||+++.+..
T Consensus 179 ~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 179 VEHVADGIIRFRR 191 (235)
T ss_dssp HHHHCSEEEEEEE
T ss_pred hheeeeEEEEEEE
Confidence 4567999988643
No 102
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.01 E-value=4.4e-10 Score=95.41 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=43.1
Q ss_pred cCCCCEEEeecCCCCCCHHH------------HHHHHHHHHHhhc--CCeEEEEEe----CcchH-hhccceeEEEeeCC
Q psy17516 192 FKPAPLYILDEVDAALDLSH------------TQNIGQMLKRHFK--TSQFIIVSL----KEGMF-SNANVIFRTKFVDG 252 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~------------~~~i~~ll~~~~~--~~q~IiVTH----~~~~~-~~ad~l~~v~~~~g 252 (264)
..+|+++++|||++++|+.. ...+++.|.++.+ +.++|+||| +...+ ..||+++.+.-.++
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~~ 202 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGKG 202 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECTT
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecCC
Confidence 45889999999999999842 2367777776643 789999999 44434 56899888543333
Q ss_pred eEEEE
Q psy17516 253 NSNVT 257 (264)
Q Consensus 253 ~s~i~ 257 (264)
..++.
T Consensus 203 ~~r~l 207 (231)
T 4a74_A 203 GKRIA 207 (231)
T ss_dssp SCEEE
T ss_pred CeEEE
Confidence 33333
No 103
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.00 E-value=2.2e-11 Score=106.30 Aligned_cols=58 Identities=7% Similarity=0.036 Sum_probs=44.1
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 164 ~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
+.....+..|||||+||+++ .+++.+|+++|+|||+...+.. +.++. +.+++++||+.
T Consensus 108 ~~~~~~~~~ls~g~~~r~~~-----~~~~~~~~~lilDg~~~~~~~~--------l~~~~-~~~i~v~th~~ 165 (245)
T 2jeo_A 108 EGKTVEVPTYDFVTHSRLPE-----TTVVYPADVVLFEGILVFYSQE--------IRDMF-HLRLFVDTDSD 165 (245)
T ss_dssp TTCCEEECCEETTTTEECSS-----CEEECCCSEEEEECTTTTTSHH--------HHTTC-SEEEEEECCHH
T ss_pred CCCCeecccccccccCccCc-----eEEecCCCEEEEeCccccccHH--------HHHhc-CeEEEEECCHH
Confidence 44567889999999999976 2356789999999999888764 22332 56788999973
No 104
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.97 E-value=6.1e-12 Score=119.68 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=56.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc---C-C------eEEEEEeCcchH
Q psy17516 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK---T-S------QFIIVSLKEGMF 238 (264)
Q Consensus 169 ~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~---~-~------q~IiVTH~~~~~ 238 (264)
.+..||||| ||++|| +.+||+ |+|||+.....+.+++.++.+ + + +++++|||.. .
T Consensus 255 ~l~~lS~g~-qrvslA-------l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~ 319 (438)
T 2dpy_A 255 SLTRYAMAQ-REIALA-------IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-D 319 (438)
T ss_dssp CHHHHHHHH-HHHHHH-------TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-C
T ss_pred hHHHHHHHH-HHHHHH-------hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-c
Confidence 477899999 999997 357776 999999999999999998765 2 4 7888999988 7
Q ss_pred hhccceeEEEeeCCeE
Q psy17516 239 SNANVIFRTKFVDGNS 254 (264)
Q Consensus 239 ~~ad~l~~v~~~~g~s 254 (264)
..||+++. +.||..
T Consensus 320 ~iad~v~~--l~dG~I 333 (438)
T 2dpy_A 320 PIADSARA--ILDGHI 333 (438)
T ss_dssp HHHHHHHH--HSSEEE
T ss_pred hhhceEEE--EeCcEE
Confidence 78999877 457754
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.94 E-value=1.6e-10 Score=96.95 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=51.1
Q ss_pred hHHHHcCCCcc-cccccCCCCHHHHHH-HHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc
Q psy17516 155 GLEVNVAFGGL-WKESLGELSGGQRSL-VALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK 224 (264)
Q Consensus 155 ~l~~~v~l~~~-~~~~~~~LSGGekqr-vaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~ 224 (264)
.++...+++.. ....+..+|+||+|+ +..+++++ ..|+++++|||||++|..+...+.+.|.++..
T Consensus 131 ~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV----LAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH----GGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH----HhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 33445566643 255678999999999 67777654 45677889999999999999999999988654
No 106
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.93 E-value=1.2e-10 Score=103.38 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 180 LVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 180 rvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
+++||++++ .+|+++++|||| |+.+...++ +....+.+++++||+......||+++.
T Consensus 88 ~~~la~aL~----~~p~illlDEp~---D~~~~~~~l---~~~~~g~~vl~t~H~~~~~~~~dri~~ 144 (261)
T 2eyu_A 88 ADALRAALR----EDPDVIFVGEMR---DLETVETAL---RAAETGHLVFGTLHTNTAIDTIHRIVD 144 (261)
T ss_dssp HHHHHHHHH----HCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSSHHHHHHHHHH
T ss_pred HHHHHHHHh----hCCCEEEeCCCC---CHHHHHHHH---HHHccCCEEEEEeCcchHHHHHHHHhh
Confidence 788888764 588999999999 988766544 333347788899999988888998754
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.93 E-value=3.2e-09 Score=89.56 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=52.3
Q ss_pred cCCCCHHHHH--HHHHHHHHHHhhcC-CCCEEEeecCCCCCCHH--------HHHHHHHHHHHhhc--CCeEEEEEeCcc
Q psy17516 170 LGELSGGQRS--LVALSLVLAMLLFK-PAPLYILDEVDAALDLS--------HTQNIGQMLKRHFK--TSQFIIVSLKEG 236 (264)
Q Consensus 170 ~~~LSGGekq--rvaiA~~la~~l~~-~~~illlDEPta~LD~~--------~~~~i~~ll~~~~~--~~q~IiVTH~~~ 236 (264)
+..+|+++.+ +++.+++ ++. +|+++++|||++.+|+. ....+++.|+++++ +.++|+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~----l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKK----TVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp EECCTTTSHHHHHHHHHHH----HCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred EEecCCHHHHHHHHHHHHH----HhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 3455666554 4444443 344 48999999999999973 23455666777654 678999999754
Q ss_pred --------------hHhhccceeEEEee
Q psy17516 237 --------------MFSNANVIFRTKFV 250 (264)
Q Consensus 237 --------------~~~~ad~l~~v~~~ 250 (264)
+...||.++.+...
T Consensus 158 ~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 158 DSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCCCCccccCCCcceeecCcEEEEEEEe
Confidence 34679999886543
No 108
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.88 E-value=3.4e-11 Score=111.22 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=57.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc---CC-----eEEEEEeCcchHh
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK---TS-----QFIIVSLKEGMFS 239 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~---~~-----q~IiVTH~~~~~~ 239 (264)
.++..||+|| |++++| +.+||+ |+|||+.....+.+++.+..+ +. +++++|||.. ..
T Consensus 167 d~~~~lS~g~-r~v~la-------l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~ 231 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA-------SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DP 231 (347)
T ss_dssp ETHHHHHHHH-HHHHHH-------TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CH
T ss_pred hhHHHHHHHH-HHHHHH-------cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-Ch
Confidence 5688999999 899997 246665 999999999999999998763 44 6778999987 67
Q ss_pred hccceeEEEeeCCeEE
Q psy17516 240 NANVIFRTKFVDGNSN 255 (264)
Q Consensus 240 ~ad~l~~v~~~~g~s~ 255 (264)
.||+++. +.||...
T Consensus 232 i~d~v~~--i~dG~Iv 245 (347)
T 2obl_A 232 IGDEVRS--ILDGHIV 245 (347)
T ss_dssp HHHHHHH--HCSEEEE
T ss_pred hhhheEE--eeCcEEE
Confidence 8999888 4577653
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.80 E-value=9.4e-12 Score=105.56 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=48.0
Q ss_pred ccccCCCCHHHHHHHH-HHHHHHHhhcCCCCEEEeec--CCCCCCHHHHHHHHHHHHHhhcCCeEE----EEEeCcchHh
Q psy17516 167 KESLGELSGGQRSLVA-LSLVLAMLLFKPAPLYILDE--VDAALDLSHTQNIGQMLKRHFKTSQFI----IVSLKEGMFS 239 (264)
Q Consensus 167 ~~~~~~LSGGekqrva-iA~~la~~l~~~~~illlDE--Pta~LD~~~~~~i~~ll~~~~~~~q~I----iVTH~~~~~~ 239 (264)
.++...+|||||+++. +++ +|+|+..+|+++|+|| |+..+|+.....+.+++.. ..++| .||||.. ..
T Consensus 78 ~~~~~~ls~~er~~~~~l~~-~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~-~~ 152 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRN-ADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP-LA 152 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCC-CCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-CT
T ss_pred ceEEEcchHHHHHHHHHHhh-hhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-hH
Confidence 3445679999998773 332 1123578899999999 8888898877777666653 22344 3449864 33
Q ss_pred hcccee
Q psy17516 240 NANVIF 245 (264)
Q Consensus 240 ~ad~l~ 245 (264)
.+|++.
T Consensus 153 ~vd~i~ 158 (189)
T 2i3b_A 153 LVEEIR 158 (189)
T ss_dssp THHHHH
T ss_pred HHHHHe
Confidence 455543
No 110
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.79 E-value=8.4e-12 Score=105.65 Aligned_cols=78 Identities=12% Similarity=0.011 Sum_probs=60.2
Q ss_pred HHhHHHHcCCCcccccccCCCCHHHH----HHHHHHHHHHHhhcCCCCEEEeecCCCC-------CCHHHHHHHHHHHHH
Q psy17516 153 LDGLEVNVAFGGLWKESLGELSGGQR----SLVALSLVLAMLLFKPAPLYILDEVDAA-------LDLSHTQNIGQMLKR 221 (264)
Q Consensus 153 ~~~l~~~v~l~~~~~~~~~~LSGGek----qrvaiA~~la~~l~~~~~illlDEPta~-------LD~~~~~~i~~ll~~ 221 (264)
+..++..+++.+....++..+|+|++ ||+++|+ +++.+|+++++|||+++ ||.....++.+.+++
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~----~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 70 YLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAP----VVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp HHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCS----EEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCc----EEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 44445566777777778899999974 6777754 35678899999999999 999999999998876
Q ss_pred hh--cCCeEEEEEeC
Q psy17516 222 HF--KTSQFIIVSLK 234 (264)
Q Consensus 222 ~~--~~~q~IiVTH~ 234 (264)
.. ++.++++++|+
T Consensus 146 ~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 146 DVLERGRSLEGVVAQ 160 (211)
T ss_dssp HHHHSCCCHHHHHHH
T ss_pred HHHHhCCCHHHHHHH
Confidence 53 36677788997
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.79 E-value=5.5e-09 Score=96.31 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHHhhc---CCCCEEEeecCCCCCCHHH------------HHHHHHHHHHhhc--CCeEEEEEeCcc
Q psy17516 174 SGGQRSLVALSLVLAMLLF---KPAPLYILDEVDAALDLSH------------TQNIGQMLKRHFK--TSQFIIVSLKEG 236 (264)
Q Consensus 174 SGGekqrvaiA~~la~~l~---~~~~illlDEPta~LD~~~------------~~~i~~ll~~~~~--~~q~IiVTH~~~ 236 (264)
|++++|++.+++.+...+. .+|+++++||||+++|+.. ...++..|+.+++ +.++|+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 5678888888776542110 5789999999999999852 4566666666653 678999999754
No 112
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.71 E-value=1.6e-09 Score=99.97 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeec---CC------CCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDE---VD------AALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS 239 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDE---Pt------a~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~ 239 (264)
..+|+|++++..++++.. ..+|++++||| |+ .++|+..+..+.+.|+++.+ +.++|++||......
T Consensus 257 ~~~~~~~~~~~~i~~~~~---~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r 333 (365)
T 1lw7_A 257 FCIQYEGKAHPFLDSMIK---EYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDR 333 (365)
T ss_dssp HHHHHHSCCCHHHHHHHH---HSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHH
T ss_pred HHHHHcCCCCHHHHHHHh---hcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHH
Confidence 345667777877776532 24779999999 65 58999999999999987654 788999998654445
Q ss_pred hccce
Q psy17516 240 NANVI 244 (264)
Q Consensus 240 ~ad~l 244 (264)
.++++
T Consensus 334 ~~~~i 338 (365)
T 1lw7_A 334 YNQVK 338 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 113
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.61 E-value=1.9e-10 Score=103.91 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=44.4
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC-CCHHHHHHHHHHHHHhhc--CCeEEEEEeCcc
Q psy17516 166 WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA-LDLSHTQNIGQMLKRHFK--TSQFIIVSLKEG 236 (264)
Q Consensus 166 ~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~-LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~ 236 (264)
.++++.++|||+|||+++||++ .++++||||++ ||+... ++++++.+ +..+|+.+||..
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~--------~ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVH--------CCFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCC--------EEEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhh--------heeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 4578899999999999887653 29999999985 999863 55666554 345557788853
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.52 E-value=4.2e-09 Score=95.48 Aligned_cols=59 Identities=17% Similarity=0.027 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHh
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFS 239 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~ 239 (264)
.++..++||++|||++ ..+|+.++| .||+.+...+.+.++.+.+ +.+.|||||+.....
T Consensus 202 ~~~eLs~~r~~iaRal----~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~ 262 (304)
T 1rj9_A 202 LMEELKKVKRAIAKAD----PEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAK 262 (304)
T ss_dssp HHHHHHHHHHHHHHHC----TTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSSCC
T ss_pred HHHHHHHHHHHHHHhh----cCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccccc
Confidence 3445558999998765 577773333 3444444456666666543 678999999876543
No 115
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.47 E-value=1.4e-07 Score=87.39 Aligned_cols=53 Identities=8% Similarity=-0.026 Sum_probs=40.3
Q ss_pred HHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 188 AMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 188 a~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
|+++.++|+++++|||+ |......+.+. ...+.++|++||+......|||++.
T Consensus 190 a~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~ 242 (356)
T 3jvv_A 190 RSALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVD 242 (356)
T ss_dssp HHHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHH
T ss_pred HHHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhh
Confidence 44567899999999999 66554433332 2347789999999999999999876
No 116
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.43 E-value=9.3e-07 Score=83.01 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHH------------HHHHHHHHHhhc--CCeEEEEEeC
Q psy17516 177 QRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT------------QNIGQMLKRHFK--TSQFIIVSLK 234 (264)
Q Consensus 177 ekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~------------~~i~~ll~~~~~--~~q~IiVTH~ 234 (264)
+.++-.++++.......+|+++++|||++.+|.... ..+++.|+++++ +.++|+|||.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 333333433333223357899999999999996543 567777887764 7899999997
No 117
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.41 E-value=1.2e-06 Score=74.72 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCCCEEEeecCCCCCCHH-------H-----HHHHHHHHHHhhc--CCeEEEEEeCcchH--------------------
Q psy17516 193 KPAPLYILDEVDAALDLS-------H-----TQNIGQMLKRHFK--TSQFIIVSLKEGMF-------------------- 238 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~-------~-----~~~i~~ll~~~~~--~~q~IiVTH~~~~~-------------------- 238 (264)
.+|+++++|||++.+|+. . ...++..|+++++ +.++|+++|.....
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 578999999999999975 2 3455555665543 68888999953321
Q ss_pred hhccceeEEEeeCCeEEEE
Q psy17516 239 SNANVIFRTKFVDGNSNVT 257 (264)
Q Consensus 239 ~~ad~l~~v~~~~g~s~i~ 257 (264)
..||.++.+.-.+|..+..
T Consensus 198 ~~~d~vi~l~~~~~~~r~l 216 (243)
T 1n0w_A 198 HASTTRLYLRKGRGETRIC 216 (243)
T ss_dssp CTTCEEEEEEECSTTEEEE
T ss_pred hcCcEEEEEEEcCCCeEEE
Confidence 1688888765444443333
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.34 E-value=2.2e-09 Score=89.02 Aligned_cols=67 Identities=6% Similarity=-0.060 Sum_probs=47.2
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
..+..+|+|++|++++||+++ ++|+++ +|+.....+.+.+..+.....++|.|++...-+.++++..
T Consensus 105 ~~~~~ls~~~~~~v~~~R~~~----r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~~ 171 (191)
T 1zp6_A 105 RPLHYIVLRTTAAEAIERCLD----RGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAIN 171 (191)
T ss_dssp SCEEEEEEECCHHHHHHHHHT----TCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTTHH
T ss_pred CCeEEEEecCCHHHHHHHHHh----cCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCCCHHHHHHHHHH
Confidence 346789999999999999864 455654 6888888877777665433345677776555666776643
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.29 E-value=1e-06 Score=72.48 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=36.9
Q ss_pred CCCEEEeecCCC-CCCHHHHHHHHHHHHHhh-cCCeEEEEEeCcc
Q psy17516 194 PAPLYILDEVDA-ALDLSHTQNIGQMLKRHF-KTSQFIIVSLKEG 236 (264)
Q Consensus 194 ~~~illlDEPta-~LD~~~~~~i~~ll~~~~-~~~q~IiVTH~~~ 236 (264)
+|+++++|||++ ++|+.....+.+++.... ++.++|++||...
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 679999999995 899999999999998765 5778889998753
No 120
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.24 E-value=2.2e-07 Score=80.54 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=38.5
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhh-cCCCCEEEee----cCCCCCCHHHHHHHHHHHHHhh
Q psy17516 166 WKESLGELSGGQRSLVALSLVLAMLL-FKPAPLYILD----EVDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 166 ~~~~~~~LSGGekqrvaiA~~la~~l-~~~~~illlD----EPta~LD~~~~~~i~~ll~~~~ 223 (264)
.++.+..||| |+ + ++ +.+|+++++| |||++||+.+...+.+.++++.
T Consensus 146 ~~r~~~~lSg----rv---~----al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 146 SRRWIHPPSG----RV---Y----NLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp HTEEEETTTT----EE---E----ETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred HcCCCcCCCC----Cc---c----ccccCCCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 4677889999 44 2 23 7899999999 9999999999998888887653
No 121
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=1.2e-06 Score=79.15 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++++|||++ ||+.....+.+++.+...+.+||++||+..
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 5789999999999 999999999999998777788999999864
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.13 E-value=2.9e-09 Score=96.69 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=42.0
Q ss_pred cCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 160 v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
+++....++. .+|||||+||+..+++ +++.|+++ ||| ..+.+.|++++.+.+++++||++.
T Consensus 130 vd~~~~~~~~-~~ls~g~~Q~~~ad~i----ll~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 130 VDAVHADEQM-NQFTIAQSQVGYADRI----LLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp EETTTHHHHH-HHCHHHHHHHHTCSEE----EEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred EEHHHHHHHH-hhchHHHHHHHhCCEE----EEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 3444444333 3799999999865432 34555554 666 678888888877888999999754
No 123
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.12 E-value=5.5e-08 Score=95.86 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=37.3
Q ss_pred cCCCCEEEeecC------CCCCCHHHHHHHHHHHHHhh-c--CCeEEEEEeCcch
Q psy17516 192 FKPAPLYILDEV------DAALDLSHTQNIGQMLKRHF-K--TSQFIIVSLKEGM 237 (264)
Q Consensus 192 ~~~~~illlDEP------ta~LD~~~~~~i~~ll~~~~-~--~~q~IiVTH~~~~ 237 (264)
...|+++|+||| |++||+.....+.++++++. + ...++++||+...
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 456899999999 99999999999999999963 3 3456689998664
No 124
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.03 E-value=9.4e-08 Score=90.32 Aligned_cols=58 Identities=9% Similarity=0.015 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCC---EEEeecCC-CCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcch
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAP---LYILDEVD-AALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM 237 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~---illlDEPt-a~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~ 237 (264)
.++++.+||++|||+ ++.+|+ ++++|||| .+||+... .+++.+..+..+|+|.|+-.+
T Consensus 118 ~~~~~l~qr~~IaRa----l~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 118 KFEDYLNAESRVNRR----QMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp HHHHHTTTSCC-CCC----CCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHH----hccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEcccC
Confidence 445667788888765 568889 99999999 69998863 344555556778888776543
No 125
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.79 E-value=1.3e-06 Score=78.53 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=32.6
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHH
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~ 210 (264)
..+...+||||+||+++|+.. + + ||+++|+|||++++|+.
T Consensus 129 p~y~~~~sgGq~~R~~~a~~~--~-~-~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 129 PKYDKSQFKGEGDRCPTGQKI--K-L-PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CCEETTHHHHTCEECSSCEEE--E-S-SCSEEEEEESSTTCCCC
T ss_pred ccCccccCCccccccccccce--E-c-CCCEEEEeCccccCCcc
Confidence 345679999999999986432 2 3 88999999999999984
No 126
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.78 E-value=0.00023 Score=67.33 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=54.4
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH--------HHHHHHHHHHHHhhc--CCeEEEEEe
Q psy17516 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL--------SHTQNIGQMLKRHFK--TSQFIIVSL 233 (264)
Q Consensus 164 ~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~--------~~~~~i~~ll~~~~~--~~q~IiVTH 233 (264)
+........+|++|.+ +.++.++ .-.+|+++++|+++...+. .....+.+.|+.+++ +.++|+++|
T Consensus 287 ~l~i~d~~~~s~~~i~--~~~~~l~--~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 287 GIYIDDTPSIRVSDIR--AKCRRLK--QESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp CEEEECCTTCCHHHHH--HHHHHHH--TTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CEEEECCCCCCHHHHH--HHHHHHH--HHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3333445689999976 3444433 2357899999999997743 334667777777764 688999999
Q ss_pred ---------C--c---------chHhhccceeEEE
Q psy17516 234 ---------K--E---------GMFSNANVIFRTK 248 (264)
Q Consensus 234 ---------~--~---------~~~~~ad~l~~v~ 248 (264)
+ + .+...||.++.+.
T Consensus 363 l~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~ 397 (454)
T 2r6a_A 363 LSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLY 397 (454)
T ss_dssp CCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEE
T ss_pred CCcccccCCCCCCcHHHhhccchhHhhCCEEEEEe
Confidence 2 3 2345699887754
No 127
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.73 E-value=6.8e-07 Score=84.37 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=41.9
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEe
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSL 233 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH 233 (264)
..++.+||+|++|++++|++++ ..|.++++ +.+|......+..+.+.+.. +.+++.||.
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~----~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALL----RRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHH----HSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred cCCHHHHHHHHHHHHHHhHHhh----cCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 5677899999999999988764 57789998 89998766333333333333 456776664
No 128
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.63 E-value=2.4e-07 Score=77.14 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEE-------EeecCC---CCCCHHHHHHHHHHHHHhhc
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLY-------ILDEVD---AALDLSHTQNIGQMLKRHFK 224 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~il-------llDEPt---a~LD~~~~~~i~~ll~~~~~ 224 (264)
..|||||+||++|||++ +.+|+++ +-|.|. -.+|......+.++|.+...
T Consensus 102 EglSgGq~qri~lARal----l~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 102 EGFSKAGKDRIVVVKKP----EEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp ESCGGGCCCEEEECSSG----GGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred CCcCCCCCcEEEEEecc----cCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 35999999999998875 4566553 224442 12344556788888865543
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.60 E-value=9.2e-06 Score=74.29 Aligned_cols=52 Identities=10% Similarity=0.041 Sum_probs=39.5
Q ss_pred ccccc-ccCCCCHHHHHHHHHHHHHHHhhcC------CCCEEEeecCCCCCCHHHHHHHHHHHHHhh
Q psy17516 164 GLWKE-SLGELSGGQRSLVALSLVLAMLLFK------PAPLYILDEVDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 164 ~~~~~-~~~~LSGGekqrvaiA~~la~~l~~------~~~illlDEPta~LD~~~~~~i~~ll~~~~ 223 (264)
.|.+. ....+|+|++|+++.|+++ +. .|++++ +||+|..+...+.+.|.++.
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l----~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHI----LTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTT----BCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHh----ccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 45553 3356899999999887543 44 367776 99999999999999988754
No 130
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.52 E-value=0.00016 Score=69.44 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=65.1
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhc-------------CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEE
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLF-------------KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~-------------~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiV 231 (264)
...+....+||||+|..-+|++-|.+.. .+-.++++||. +-+|+.+....+++++++ +-|.||+
T Consensus 372 ~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliia 448 (483)
T 3euj_A 372 WMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIA 448 (483)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEE
T ss_pred eeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEE
Confidence 3455688999999997666665443322 13458999999 999999999999999975 7899999
Q ss_pred EeCcchHhhccceeEEE--eeCCeEEE
Q psy17516 232 SLKEGMFSNANVIFRTK--FVDGNSNV 256 (264)
Q Consensus 232 TH~~~~~~~ad~l~~v~--~~~g~s~i 256 (264)
|=. .+..+.|..|.+. .-+|.-.|
T Consensus 449 tP~-~i~p~v~~~~~~~r~~~~~~~~~ 474 (483)
T 3euj_A 449 APE-NISPERGTTYKLVRKILANQEYV 474 (483)
T ss_dssp ESS-SCCCSSSEEEECCEEEETTEEEE
T ss_pred Ccc-hhhhccCceEEEEEeecCCceEE
Confidence 976 5557788888742 22455444
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.43 E-value=6.9e-05 Score=68.37 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=26.1
Q ss_pred hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCcch
Q psy17516 191 LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKEGM 237 (264)
Q Consensus 191 l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~~~ 237 (264)
+..+++++++|.+++ ..+.+.++.+. .+.+.||+||-.++
T Consensus 240 l~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 240 TKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp HCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred hcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 345667888886665 24444555554 26789999997654
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.00031 Score=59.53 Aligned_cols=57 Identities=21% Similarity=0.125 Sum_probs=39.6
Q ss_pred CCCCEEEeecCCCCC--CHHHHHHHHHHHHHhh--cCCeEEEEEeCcch---------HhhccceeEEEe
Q psy17516 193 KPAPLYILDEVDAAL--DLSHTQNIGQMLKRHF--KTSQFIIVSLKEGM---------FSNANVIFRTKF 249 (264)
Q Consensus 193 ~~~~illlDEPta~L--D~~~~~~i~~ll~~~~--~~~q~IiVTH~~~~---------~~~ad~l~~v~~ 249 (264)
.+|+++++|+|++.+ |+....+++..+.+.. .+.++|+++|.... ...||.++.+..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 357999999999988 6655555555555443 26788999996543 467898887654
No 133
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.38 E-value=2.5e-05 Score=75.17 Aligned_cols=39 Identities=10% Similarity=-0.052 Sum_probs=29.8
Q ss_pred ccccceeeeccceee------chhhHHHHhhhhhc--cchhHHHhhH
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISMEAM--TKKSIVESDR 100 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~~~~ 100 (264)
.+++||++++|++++ ||||||+++|+++. ..|.+.+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~ 329 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 329 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC
Confidence 568999999999987 99999999886643 3345555443
No 134
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.32 E-value=1.1e-05 Score=74.42 Aligned_cols=62 Identities=8% Similarity=-0.060 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcC-CeEEEEEeCcchHhhccceeE
Q psy17516 174 SGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT-SQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 174 SGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~-~q~IiVTH~~~~~~~ad~l~~ 246 (264)
+++..++..|+.+ +...|+.+++|||.++ .+.++|+.+..+ .+.+..+|.......+||+..
T Consensus 236 ~~~~t~~~~i~~~----l~~~pd~~l~~e~r~~-------~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~ 298 (361)
T 2gza_A 236 NAPVTAATLLRSC----LRMKPTRILLAELRGG-------EAYDFINVAASGHGGSITSCHAGSCELTFERLAL 298 (361)
T ss_dssp ---CCHHHHHHHH----TTSCCSEEEESCCCST-------HHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHH
T ss_pred ccccCHHHHHHHH----HhcCCCEEEEcCchHH-------HHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHH
Confidence 3445567777654 3467899999999962 455667766554 356888999877777777654
No 135
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.28 E-value=0.0016 Score=58.17 Aligned_cols=52 Identities=6% Similarity=0.046 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEeecC-CCCCCHHHHHHHHHHHHHhhcCCeEEEEEe
Q psy17516 178 RSLVALSLVLAMLLFKPAPLYILDEV-DAALDLSHTQNIGQMLKRHFKTSQFIIVSL 233 (264)
Q Consensus 178 kqrvaiA~~la~~l~~~~~illlDEP-ta~LD~~~~~~i~~ll~~~~~~~q~IiVTH 233 (264)
-++.+|+.+. ...++++|+||| +.++|......+..+.+.......++++..
T Consensus 168 l~~~~l~~~~----~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~ 220 (295)
T 1ls1_A 168 IRRRVEEKAR----LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 220 (295)
T ss_dssp HHHHHHHHHH----HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred HHHHHHHHHH----hCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeC
Confidence 3567776553 257899999999 999999988888888776654444445543
No 136
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.25 E-value=0.00012 Score=67.64 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=38.5
Q ss_pred HHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh
Q psy17516 153 LDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 153 ~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~ 223 (264)
...++..+++..+.+..+.+|| |++||+|||+++ +++........++.++.
T Consensus 295 ~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl-------------------i~~~R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 295 FVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA-------------------IAETRFENYHRILESMA 345 (358)
T ss_dssp SGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC-------------------CCHHHHHHHHHHHHHHH
Confidence 4566677888888999999999 999999998542 45555666666776654
No 137
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.12 E-value=0.0015 Score=58.95 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=24.0
Q ss_pred CCCCHHHHHHH---HHHHHHHHhhcCCCCEEEeecCCC
Q psy17516 171 GELSGGQRSLV---ALSLVLAMLLFKPAPLYILDEVDA 205 (264)
Q Consensus 171 ~~LSGGekqrv---aiA~~la~~l~~~~~illlDEPta 205 (264)
..+|||+.+++ +|+++ +...|+++|+|+|..
T Consensus 164 ~~~s~~~~~~v~~~al~~a----~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 164 SHSEGADPAAVAFDAVAHA----LARNKDVVIIDTAGR 197 (306)
T ss_dssp CCSTTCCHHHHHHHHHHHH----HHTTCSEEEEEECCC
T ss_pred ecCCccCHHHHHHHHHHHH----HhcCCCEEEEECCCc
Confidence 35689999998 55544 457889999999974
No 138
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.08 E-value=3e-07 Score=77.58 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=27.9
Q ss_pred hhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh
Q psy17516 190 LLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 190 ~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~ 223 (264)
+++.||++.+|||+++++|..+...|.+.|....
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAAR 153 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3578889999999999999988888887776543
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.00 E-value=2.9e-06 Score=75.31 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=35.6
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC------------CCCHHHHHHHHHHHH
Q psy17516 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA------------ALDLSHTQNIGQMLK 220 (264)
Q Consensus 165 ~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta------------~LD~~~~~~i~~ll~ 220 (264)
..++.+.+|||||+|++.++++ +.++|+++ ||+.. ..|...+..+++.+.
T Consensus 130 ~~~~~l~~Lsgg~~~~~~i~ia----~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 130 VVNQLLTEMDGLEARQQVFIMA----ATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HHHHHHHHHHTCCSTTCEEEEE----EESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcccccCCEEEEe----ecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 3466788999999999988644 56788764 88753 346677777666543
No 140
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.97 E-value=0.00016 Score=59.03 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=30.5
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh-ccchhHHHhh
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA-MTKKSIVESD 99 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l-~~~~~~~~~~ 99 (264)
...+++||++++|++++ ||||||+++++++ +..|.+...+
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g 67 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPT 67 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCT
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECC
Confidence 34557999999999997 9999999988654 4455555444
No 141
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.62 E-value=0.0077 Score=53.82 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=33.7
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhh---cCCeEEEE--EeCcchH-hhcccee
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHF---KTSQFIIV--SLKEGMF-SNANVIF 245 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~---~~~q~IiV--TH~~~~~-~~ad~l~ 245 (264)
.+++++|+| |+|+|+.....+.++.+-+. ....++|+ ||....+ +.|+++.
T Consensus 181 ~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~ 237 (296)
T 2px0_A 181 SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS 237 (296)
T ss_dssp GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS
T ss_pred cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh
Confidence 678999999 99999877666655554332 22345566 8885544 4577653
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.56 E-value=0.0027 Score=50.89 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=31.6
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCe-EEEEEeC
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQ-FIIVSLK 234 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q-~IiVTH~ 234 (264)
.+|+++++|||++ +++.....+.+++..+.. +.+ +|++||.
T Consensus 82 ~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred hCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4679999999998 666668889999887654 466 6677764
No 143
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.24 E-value=0.0043 Score=57.20 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHhhccceeE
Q psy17516 181 VALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246 (264)
Q Consensus 181 vaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~~ad~l~~ 246 (264)
.+|+.+ +..+|+++++|||+ |+..... .++....+..++.++|.......+|+++.
T Consensus 200 ~~l~~~----L~~~pd~illdE~~---d~e~~~~---~l~~~~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 200 DALRAA----LREDPDVIFVGEMR---DLETVET---ALRAAETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHH----TTSCCSEEEESCCC---SHHHHHH---HHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHH----hhhCcCEEEECCCC---CHHHHHH---HHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence 466554 45688999999999 7765443 44444446778889999887788888743
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.11 E-value=1.6e-05 Score=72.17 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=30.9
Q ss_pred cCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc
Q psy17516 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK 224 (264)
Q Consensus 160 v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~ 224 (264)
+++.+ ....+..||+|++||++++ .+||+.+...+.++|++..+
T Consensus 151 ~~li~-at~~~~~Ls~~l~sR~~l~--------------------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 151 FTLVG-ATTRSGLLSSPLRSRFGII--------------------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp CEEEE-EESCGGGSCHHHHTTCSEE--------------------EECCCCCHHHHHHHHHHHHH
T ss_pred eEEEE-ecCCcccCCHHHHHhcCce--------------------eeCCCCCHHHHHHHHHHHHH
Confidence 44444 5677889999999998652 45666666777777776553
No 145
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.69 E-value=0.0031 Score=53.45 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=16.0
Q ss_pred hhcccccceeeeccceee------chhhHHHHhhh-hhc
Q psy17516 59 KYLGSMSSFSVKVGAMVK------APLRTLLFISM-EAM 90 (264)
Q Consensus 59 ~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~-~l~ 90 (264)
.....++||++++|++++ ||||||++++. ++.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344567999999999997 99999999887 653
No 146
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.74 E-value=0.011 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=17.7
Q ss_pred ceeeeccceee------chhhHHHHhhhhh
Q psy17516 66 SFSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 66 ~~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
|+++++|++++ ||||||++++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 56788999987 9999999988665
No 147
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.60 E-value=0.0041 Score=54.39 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=24.6
Q ss_pred hHHHHHHHHHH-HhhcccccccccchhhHHHHHhhhhcccccceeeec---cceee------chhhHHHHhhhh
Q psy17516 25 DKKAQLSLRNE-ENQFKVGAMVKAPLKTLLFISMKKYLGSMSSFSVKV---GAMVK------APLRTLLFISME 88 (264)
Q Consensus 25 n~~a~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~---Ge~~~------sGKSTLl~~l~~ 88 (264)
|...+.+++++ .+.|... ..+++++||+|.+ |++++ |||||+.++++.
T Consensus 13 ~~~~~l~~~~~~~~~~~~~----------------~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 13 NSSALLETGSLLHSPFDEE----------------QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -----------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ccCCceEEcceeeEEecCc----------------chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999 9999311 2345669999999 99887 999999998854
No 148
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.58 E-value=0.006 Score=58.43 Aligned_cols=40 Identities=10% Similarity=-0.145 Sum_probs=31.3
Q ss_pred hcccccceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 60 YLGSMSSFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
..++++||+|++ ++++ |||||||++++++ ++.|.+.+.+.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 65 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT 65 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 345689999999 9997 9999999999765 34566666654
No 149
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.26 E-value=0.0076 Score=56.85 Aligned_cols=57 Identities=9% Similarity=-0.022 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHH-hhc-CCeEEEEEeCc
Q psy17516 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR-HFK-TSQFIIVSLKE 235 (264)
Q Consensus 172 ~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~-~~~-~~q~IiVTH~~ 235 (264)
.|+-.+ +.|+++ +...++++++|+|+..|.+.....+.+.+++ +.. +..++.+|.+.
T Consensus 161 ~l~~~D---ieilk~----L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 161 SLKSLD---LVTMKK----LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp --CHHH---HHHHHH----TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCCHHH---HHHHHH----HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 455555 556554 4467899999999999999999999998886 554 56777777654
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.88 E-value=0.0092 Score=53.29 Aligned_cols=28 Identities=4% Similarity=-0.015 Sum_probs=21.5
Q ss_pred eccceee------chhhHHHHhhhhh----ccchhHHH
Q psy17516 70 KVGAMVK------APLRTLLFISMEA----MTKKSIVE 97 (264)
Q Consensus 70 ~~Ge~~~------sGKSTLl~~l~~l----~~~~~~~~ 97 (264)
++|++++ ||||||++++.++ ++.|.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 8999997 9999999998764 33455544
No 151
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.78 E-value=0.16 Score=46.06 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=51.4
Q ss_pred CCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEee-cCCCCCCHHHHHHHHHHHHHhhcCCeEEEEE--eCc
Q psy17516 161 AFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD-EVDAALDLSHTQNIGQMLKRHFKTSQFIIVS--LKE 235 (264)
Q Consensus 161 ~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlD-EPta~LD~~~~~~i~~ll~~~~~~~q~IiVT--H~~ 235 (264)
..++..+.++..+|+|++|++. +. +...++-++++| +|..++|..+...+...+.....+..+|+|. ||.
T Consensus 220 Dt~G~~~~~~~~~~~~~~~~~~-~~----~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 220 DTPGLLDRPISERNEIEKQAIL-AL----RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp ECTTTSSSCSTTSCHHHHHHHH-GG----GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred eCCCccccchhhhhHHHHHHHH-HH----HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 3445555677889999988765 32 233566789999 9999999999888888877755466778887 664
No 152
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.45 E-value=0.0029 Score=61.82 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=36.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHH
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~ 221 (264)
...+|+|++|++..+++. ..++.++++||+.. |++.....+.+.|.+
T Consensus 181 ~g~~~~g~~~~i~~g~~~----~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIH----RAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---CCCCGGGGEECCHHH----HTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCccccccccccCceee----ecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 367999999998776553 24668999999998 899999999998875
No 153
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.26 E-value=0.14 Score=48.72 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCEEEeecCCC----------CCCHHHHHHHHHHHHHhh-----cCCeEEEEEeCcchH
Q psy17516 175 GGQRSLVALSLVLAMLLFKPAPLYILDEVDA----------ALDLSHTQNIGQMLKRHF-----KTSQFIIVSLKEGMF 238 (264)
Q Consensus 175 GGekqrvaiA~~la~~l~~~~~illlDEPta----------~LD~~~~~~i~~ll~~~~-----~~~q~IiVTH~~~~~ 238 (264)
|+++.|..++.+. ...|.++++|||++ +.|+.....+.+++..+. .+..+|..||++..+
T Consensus 93 ~~~~~r~lf~~A~----~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAK----AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHH----HTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHH----hcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 6777777776553 46789999999965 456665556666666542 234566788887654
No 154
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.22 E-value=0.031 Score=46.09 Aligned_cols=30 Identities=13% Similarity=-0.196 Sum_probs=14.9
Q ss_pred hhhcccccceeeeccceee------chhhHHHHhhh
Q psy17516 58 KKYLGSMSSFSVKVGAMVK------APLRTLLFISM 87 (264)
Q Consensus 58 ~~~~~~~v~~~v~~Ge~~~------sGKSTLl~~l~ 87 (264)
..+.++++||++.+|+++. |||||+.+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3567788999999999876 99999998774
No 155
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.57 E-value=0.07 Score=53.78 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=51.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCC-CCCHHHHHHHHHHHHHhhcCCeEEEE--EeCcchH
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA-ALDLSHTQNIGQMLKRHFKTSQFIIV--SLKEGMF 238 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta-~LD~~~~~~i~~ll~~~~~~~q~IiV--TH~~~~~ 238 (264)
...+.-+|+|+.+|..++. .++..+.++++|||+. +||......++..+.....+.++|+. ||+...+
T Consensus 185 ~~~I~v~T~G~l~r~l~~~----~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l 255 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMED----HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKF 255 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHS----TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHH
T ss_pred CCCEEEECHHHHHHHHhhC----ccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHH
Confidence 3457788999999998864 3578889999999996 89987766666666555556677755 7876543
No 156
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.94 E-value=0.098 Score=47.49 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc-CCCCEEEeecCC
Q psy17516 171 GELSGGQRSLVALSLVLAMLLF-KPAPLYILDEVD 204 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~-~~~~illlDEPt 204 (264)
..+||||+||.++++++...+- .+++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3589999999999999844222 267999999997
No 157
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.56 E-value=0.18 Score=42.69 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcchHh
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFS 239 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~~~ 239 (264)
..++++||| ||+.....+.+.+. ++.+++|+||+...++
T Consensus 106 ~~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 106 ATGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILPPSKIELD 144 (219)
T ss_dssp TTTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHH
T ss_pred hcCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHH
Confidence 457999999 99999999998776 4667889999976554
No 158
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.47 E-value=0.098 Score=42.64 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=17.1
Q ss_pred eeeeccceee------chhhHHHHhhhhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
+++.+|++++ |||||+++++.++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3678899886 9999999988654
No 159
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.18 E-value=0.1 Score=43.28 Aligned_cols=22 Identities=18% Similarity=-0.035 Sum_probs=18.3
Q ss_pred eeccceee------chhhHHHHhhhhhc
Q psy17516 69 VKVGAMVK------APLRTLLFISMEAM 90 (264)
Q Consensus 69 v~~Ge~~~------sGKSTLl~~l~~l~ 90 (264)
.++|++++ ||||||+++++++.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899987 99999999886654
No 160
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.72 E-value=0.29 Score=41.23 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=37.8
Q ss_pred CCCCEEEeecCCCC--CCHHHHHHHHHHHHHhhcCCeEEEEEeC---cchHhhccceeEEE
Q psy17516 193 KPAPLYILDEVDAA--LDLSHTQNIGQMLKRHFKTSQFIIVSLK---EGMFSNANVIFRTK 248 (264)
Q Consensus 193 ~~~~illlDEPta~--LD~~~~~~i~~ll~~~~~~~q~IiVTH~---~~~~~~ad~l~~v~ 248 (264)
...+++||||...+ ++......+.++|.+.... +-||+|-| +.+++.||-+-.++
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~-~~vIlTGr~ap~~l~e~AD~VTem~ 178 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGH-QTVIITGRGCHRDILDLADTVSELR 178 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTT-CEEEEECSSCCHHHHHHCSEEEECC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCC-CEEEEECCCCcHHHHHhCcceeeec
Confidence 56799999999763 3444555788888764434 55555555 45789999876643
No 161
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.68 E-value=0.13 Score=43.69 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=17.2
Q ss_pred eeeeccceee------chhhHHHHhhhhhc
Q psy17516 67 FSVKVGAMVK------APLRTLLFISMEAM 90 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~l~ 90 (264)
-.+++|++++ ||||||++++.++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999887 99999999886653
No 162
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.99 E-value=0.059 Score=51.76 Aligned_cols=57 Identities=11% Similarity=-0.037 Sum_probs=39.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEE--EEeCcchHh-hcc
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFII--VSLKEGMFS-NAN 242 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~Ii--VTH~~~~~~-~ad 242 (264)
...+|||++||.++| + + | +++||+.....+.+.|.++.. +.++|+ +||+...++ .|+
T Consensus 398 ~~~~s~G~~~R~~~a------------i--~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 398 TMWVRGNTRLRRTKE------------V--N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEESSSCEEEEEEE------------E--E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEeCCCceEEEEE------------E--E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 456899999887763 1 1 7 999999877766666666654 456654 799876543 444
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.58 E-value=0.2 Score=42.49 Aligned_cols=29 Identities=7% Similarity=-0.101 Sum_probs=22.0
Q ss_pred ccccceeeeccceee----chhhHHHHhhhhhc
Q psy17516 62 GSMSSFSVKVGAMVK----APLRTLLFISMEAM 90 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~----sGKSTLl~~l~~l~ 90 (264)
.+++++++++|=++. +|||||+++++...
T Consensus 41 ~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 41 FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999994332 99999999886544
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.11 E-value=1.2 Score=40.28 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCCCEEEeecCCCCC----------CH---HHHHHHHHHHHHh----hc-CCeEEEEEeC
Q psy17516 181 VALSLVLAMLLFKPAPLYILDEVDAAL----------DL---SHTQNIGQMLKRH----FK-TSQFIIVSLK 234 (264)
Q Consensus 181 vaiA~~la~~l~~~~~illlDEPta~L----------D~---~~~~~i~~ll~~~----~~-~~q~IiVTH~ 234 (264)
+.+++.++ .-.+|+++++|||++.+ |. .....+.+.++++ .+ +.++|+++|-
T Consensus 128 l~~~~~l~--~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~ 197 (349)
T 2zr9_A 128 LEIADMLV--RSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINEL 197 (349)
T ss_dssp HHHHHHHH--TTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHH--hcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 34554433 23458999999999988 22 1222344444443 22 7888899994
No 165
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.11 E-value=0.23 Score=42.92 Aligned_cols=30 Identities=7% Similarity=-0.099 Sum_probs=22.4
Q ss_pred ccccceeeeccceee----chhhHHHHhhhhhcc
Q psy17516 62 GSMSSFSVKVGAMVK----APLRTLLFISMEAMT 91 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~----sGKSTLl~~l~~l~~ 91 (264)
.+++++++++|=++. +|||||+++++....
T Consensus 65 l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 65 FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 346899999993332 999999998865443
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.61 E-value=0.24 Score=39.60 Aligned_cols=26 Identities=4% Similarity=-0.095 Sum_probs=20.7
Q ss_pred cccceeeeccceee------chhhHHHHhhhhh
Q psy17516 63 SMSSFSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
.+++|++.+| +++ ||||||+.++..+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 5788999998 554 9999999887543
No 167
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.89 E-value=0.19 Score=42.42 Aligned_cols=25 Identities=12% Similarity=-0.253 Sum_probs=20.8
Q ss_pred cceeeeccceee------chhhHHHHhhhhh
Q psy17516 65 SSFSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 65 v~~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
-+...++|++++ ||||||++++.++
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 455678999997 9999999988765
No 168
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.38 E-value=0.21 Score=45.08 Aligned_cols=27 Identities=11% Similarity=-0.319 Sum_probs=21.5
Q ss_pred ccccceeeeccceee------chhhHHHHhhhh
Q psy17516 62 GSMSSFSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 62 ~~~v~~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
.+++++.+.+|.+++ +|||||++.+++
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345778888999887 999999987743
No 169
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.76 E-value=0.97 Score=42.14 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCCEEEeecCCCCCCH-HHHHHHHHHHHHhhc-CCeEEEEEeCc
Q psy17516 194 PAPLYILDEVDAALDL-SHTQNIGQMLKRHFK-TSQFIIVSLKE 235 (264)
Q Consensus 194 ~~~illlDEPta~LD~-~~~~~i~~ll~~~~~-~~q~IiVTH~~ 235 (264)
.++++++||++.-.+. .....+...+..+.. +.++|++||++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 7799999999987764 667778888877654 57888889874
No 170
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=84.12 E-value=0.25 Score=43.74 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=19.6
Q ss_pred eeeeccceee------chhhHHHHhhhhhc--cchhHHH
Q psy17516 67 FSVKVGAMVK------APLRTLLFISMEAM--TKKSIVE 97 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~ 97 (264)
|++.+|++++ +|||||++++.++. +.|.+..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 4566788876 99999999997653 3455554
No 171
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=84.04 E-value=0.27 Score=44.08 Aligned_cols=23 Identities=9% Similarity=-0.140 Sum_probs=19.1
Q ss_pred eeeeccceee------chhhHHHHhhhhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
+++.+|++++ +|||||++++.++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 6678999887 9999999998654
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.04 E-value=0.64 Score=41.34 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=34.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc----CCeEEEEEeCcchH
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFK----TSQFIIVSLKEGMF 238 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~----~~q~IiVTH~~~~~ 238 (264)
..|.++++||++.. |......+..++.+... +..+|++||+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999985 88888887777765443 56788889987544
No 173
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.26 E-value=0.23 Score=45.82 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=24.6
Q ss_pred cccccceeeeccceee------chhhHHHHhhhhh
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
..+++++.+++|++++ +|||||++++++.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556899999999987 9999999988654
No 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.01 E-value=0.47 Score=38.80 Aligned_cols=23 Identities=9% Similarity=-0.061 Sum_probs=16.0
Q ss_pred eeeeccceee------chhhHHHHhhhhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
+..++|++++ ||||||++++++.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4557899886 9999999988543
No 175
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=82.99 E-value=0.51 Score=42.54 Aligned_cols=14 Identities=7% Similarity=-0.157 Sum_probs=11.6
Q ss_pred chhhHHHHhhhhhc
Q psy17516 77 APLRTLLFISMEAM 90 (264)
Q Consensus 77 sGKSTLl~~l~~l~ 90 (264)
||||||++++.++.
T Consensus 103 SGKSTl~~~L~~ll 116 (321)
T 3tqc_A 103 VGKSTTSRVLKALL 116 (321)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999886553
No 176
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.59 E-value=1.1 Score=45.22 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=18.3
Q ss_pred ceeeeccceee------chhhHHHHhhhhh
Q psy17516 66 SFSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 66 ~~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
+|.+++|+.+. +|||||+++++..
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45677787664 9999999988643
No 177
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.52 E-value=3.1 Score=37.66 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAA 206 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~ 206 (264)
..||++++++++.|... +..+++++.|+|...
T Consensus 108 g~Ls~~e~~~l~~a~~~----l~~~~l~I~d~~~~s 139 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDH----LSQKKLFFYDKSYVR 139 (338)
T ss_dssp TCCCHHHHHHHHHHHHH----HHHSCEEEECCTTCC
T ss_pred CCCCHHHHHHHHHHHHH----HhcCCeEEeCCCCCc
Confidence 36888888888876543 235678888887643
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=82.33 E-value=2.1 Score=38.27 Aligned_cols=26 Identities=12% Similarity=-0.111 Sum_probs=22.0
Q ss_pred cccceeeeccceee------chhhHHHHhhhh
Q psy17516 63 SMSSFSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
.+++|++++|++++ +||||++..++.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 57889999999886 999999977754
No 179
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.60 E-value=0.37 Score=44.12 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=43.0
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcCCCCE--EEeecCCCCCCHH----H-----HHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPL--YILDEVDAALDLS----H-----TQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 168 ~~~~~LSGGekqrvaiA~~la~~l~~~~~i--lllDEPta~LD~~----~-----~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
+..-.+||| ||++||++ ++.+|++ +|+||.|++||.. . ...+.+.+..+.++.+.+.+.|+..
T Consensus 279 qrl~~~~~G--~R~~i~e~----l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYEL----LIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp EEEEECSSS--SEEEEEEE----CCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred EEeEecCCC--CEEEEEEE----eeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 344456888 88888654 5778899 9999999999864 1 1224445555556666677777643
No 180
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.33 E-value=1.5 Score=35.45 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
..+.++++||+.. +|+.....+..++.+...+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 3467999999987 788888888777765444567778887754
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=81.11 E-value=0.36 Score=39.55 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=20.0
Q ss_pred cceeeeccceee------chhhHHHHhhhhh
Q psy17516 65 SSFSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 65 v~~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
.++..++|++++ |||||++++++..
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455668899886 9999999988654
No 182
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=81.09 E-value=0.62 Score=37.50 Aligned_cols=19 Identities=5% Similarity=-0.045 Sum_probs=14.8
Q ss_pred ccceee------chhhHHHHhhhhh
Q psy17516 71 VGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 71 ~Ge~~~------sGKSTLl~~l~~l 89 (264)
+|++++ ||||||++++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 467665 9999999988654
No 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.61 E-value=0.65 Score=37.81 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=12.1
Q ss_pred chhhHHHHhhhhhc
Q psy17516 77 APLRTLLFISMEAM 90 (264)
Q Consensus 77 sGKSTLl~~l~~l~ 90 (264)
||||||+++++++.
T Consensus 11 sGKTTLl~~l~g~l 24 (178)
T 1ye8_A 11 VGKTTLVKKIVERL 24 (178)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999987654
No 184
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=79.60 E-value=0.72 Score=37.27 Aligned_cols=13 Identities=23% Similarity=0.036 Sum_probs=11.2
Q ss_pred chhhHHHHhhhhh
Q psy17516 77 APLRTLLFISMEA 89 (264)
Q Consensus 77 sGKSTLl~~l~~l 89 (264)
||||||++++.++
T Consensus 12 aGKsTl~~~L~~~ 24 (186)
T 3a00_A 12 TGKSTLLKKLFAE 24 (186)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhh
Confidence 9999999988654
No 185
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=79.33 E-value=0.25 Score=42.37 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=20.6
Q ss_pred ceeeeccceee------chhhHHHHhhhhh--ccchhHHHhhH
Q psy17516 66 SFSVKVGAMVK------APLRTLLFISMEA--MTKKSIVESDR 100 (264)
Q Consensus 66 ~~~v~~Ge~~~------sGKSTLl~~l~~l--~~~~~~~~~~~ 100 (264)
+|++.+ ++++ |||||||.+++++ ++.|.+.+.+.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 566666 6665 9999999998664 44556655553
No 186
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=79.09 E-value=0.019 Score=46.74 Aligned_cols=64 Identities=8% Similarity=-0.076 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHH------HHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeC-cch-Hhhccce
Q psy17516 174 SGGQRSLVALSL------VLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLK-EGM-FSNANVI 244 (264)
Q Consensus 174 SGGekqrvaiA~------~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~-~~~-~~~ad~l 244 (264)
|+|++|++.++. ++ ...+....+| .+||+..... .+.+..+.. +.++|.+||. ... -+.||++
T Consensus 96 s~g~~~~~~~i~L~~~~e~l----~~R~~~r~~d---~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i 167 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREEL----LRRDALRKKD---EQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNL 167 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHH----HHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHH
T ss_pred hcccCCCeEEEEEeCCHHHH----HHHHHhcccc---ccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHH
Confidence 777777765433 22 1233444556 3799988777 777777654 4567777887 444 4678988
Q ss_pred e
Q psy17516 245 F 245 (264)
Q Consensus 245 ~ 245 (264)
+
T Consensus 168 ~ 168 (189)
T 2bdt_A 168 K 168 (189)
T ss_dssp H
T ss_pred h
Confidence 7
No 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=78.42 E-value=1.1 Score=36.05 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHH
Q psy17516 181 VALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221 (264)
Q Consensus 181 vaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~ 221 (264)
+.+|++++ ..|.+.++| ||++|..+...+.+.|.+
T Consensus 154 ~~~a~~l~----~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 154 TDEARAFA----EKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp HHHHHHHH----HHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHH----HHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 45666655 467899999 999999999999998865
No 188
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=78.02 E-value=0.57 Score=38.42 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=17.4
Q ss_pred eeeccceee------chhhHHHHhhhhh
Q psy17516 68 SVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 68 ~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
..++|++++ ||||||++++...
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456788886 9999999987553
No 189
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=77.65 E-value=0.9 Score=41.49 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.0
Q ss_pred cccceeeeccceee------chhhHHHHhhhh
Q psy17516 63 SMSSFSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
++++|++.+| +++ ||||||+.++.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 4789999999 765 999999987754
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=77.58 E-value=4.8 Score=34.46 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCH
Q psy17516 174 SGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209 (264)
Q Consensus 174 SGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~ 209 (264)
++++..+..++.+. ...|.++++||+++.++.
T Consensus 97 ~~~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVAR----HMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHH----HTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHH----HcCCcEEEeccHHHhccc
Confidence 35666666665443 356789999999987654
No 191
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=76.98 E-value=1.7 Score=39.52 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=44.3
Q ss_pred hHHHHcCCCccc----ccccCCCCHHHHHHHHHHHHHHHhh-cCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh
Q psy17516 155 GLEVNVAFGGLW----KESLGELSGGQRSLVALSLVLAMLL-FKPAPLYILDEVDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 155 ~l~~~v~l~~~~----~~~~~~LSGGekqrvaiA~~la~~l-~~~~~illlDEPta~LD~~~~~~i~~ll~~~~ 223 (264)
.++..+++.+.. ...+..+|+|++++++++..++..+ ..+|++ +|+|++|..+...+.+.|.+..
T Consensus 283 ~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 283 EILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 344455544332 3446678988999888875555544 333344 7999999999999999887643
No 192
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=75.19 E-value=1.1 Score=36.64 Aligned_cols=22 Identities=9% Similarity=-0.198 Sum_probs=17.3
Q ss_pred eeeeccceee------chhhHHHHhhhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
-++++|.+++ |||||+++.+..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567788776 999999988754
No 193
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=74.10 E-value=1.2 Score=34.88 Aligned_cols=13 Identities=15% Similarity=-0.176 Sum_probs=11.1
Q ss_pred chhhHHHHhhhhh
Q psy17516 77 APLRTLLFISMEA 89 (264)
Q Consensus 77 sGKSTLl~~l~~l 89 (264)
|||||++++++..
T Consensus 15 sGKSTl~~~La~~ 27 (173)
T 1kag_A 15 AGKSTIGRQLAQQ 27 (173)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988653
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=73.60 E-value=1.3 Score=34.84 Aligned_cols=19 Identities=0% Similarity=-0.228 Sum_probs=14.6
Q ss_pred eccceee------chhhHHHHhhhh
Q psy17516 70 KVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 70 ~~Ge~~~------sGKSTLl~~l~~ 88 (264)
.+|++++ |||||+++++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3577665 999999998754
No 195
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=72.76 E-value=1.3 Score=35.49 Aligned_cols=12 Identities=8% Similarity=-0.346 Sum_probs=10.7
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
||||||+++++.
T Consensus 13 aGKSTl~~~L~~ 24 (189)
T 2bdt_A 13 VGKSTTCKRLAA 24 (189)
T ss_dssp SSHHHHHHHHHH
T ss_pred CcHHHHHHHHhc
Confidence 999999998864
No 196
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=72.39 E-value=1.4 Score=37.67 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=15.9
Q ss_pred eccceee------chhhHHHHhhh
Q psy17516 70 KVGAMVK------APLRTLLFISM 87 (264)
Q Consensus 70 ~~Ge~~~------sGKSTLl~~l~ 87 (264)
.+|++++ |||||++++++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 6788887 99999999886
No 197
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=72.29 E-value=0.96 Score=39.97 Aligned_cols=35 Identities=11% Similarity=-0.056 Sum_probs=28.8
Q ss_pred hHHHhHHHHcCCCc-ccccccCCCCHHHHHHHHHHH
Q psy17516 151 DILDGLEVNVAFGG-LWKESLGELSGGQRSLVALSL 185 (264)
Q Consensus 151 ~~~~~l~~~v~l~~-~~~~~~~~LSGGekqrvaiA~ 185 (264)
..+..++..+++.+ ..++++..|||.+++++.|||
T Consensus 265 ~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 265 CAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp CHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777889986 778899999999999999874
No 198
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.13 E-value=1.3 Score=41.18 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=25.4
Q ss_pred HHHcCCCcccccccCCCCHHHHHHHHHHHHHHHhhcCCCCEEE
Q psy17516 157 EVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYI 199 (264)
Q Consensus 157 ~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la~~l~~~~~ill 199 (264)
+..+++... ..+..|||||+|| || ++++.+|++..
T Consensus 280 L~~lgl~~~--~~~~~LSgg~~QR--La----raL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPF--LISSSLLGVLAQR--LV----RTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHH--HHHHHEEEEEEEE--EE----EEECTTTCEEE
T ss_pred HHHcCCcHH--HHHHHHHHHHHHH--hh----hhhcCCCCccC
Confidence 345677654 3678999999999 54 44678888765
No 199
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.31 E-value=1.6 Score=35.89 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=15.8
Q ss_pred eccceee------chhhHHHHhhhhh
Q psy17516 70 KVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 70 ~~Ge~~~------sGKSTLl~~l~~l 89 (264)
++|++++ ||||||++.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5788776 9999999887543
No 200
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=70.81 E-value=1.6 Score=36.85 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=16.3
Q ss_pred cccceeee---ccceee------chhhHHHHhhhh
Q psy17516 63 SMSSFSVK---VGAMVK------APLRTLLFISME 88 (264)
Q Consensus 63 ~~v~~~v~---~Ge~~~------sGKSTLl~~l~~ 88 (264)
.++||.+. +|.++. |||||+++.+..
T Consensus 14 ~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 14 GTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp ------CCCCCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34566655 899886 999999987743
No 201
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.91 E-value=1.6 Score=39.71 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=18.2
Q ss_pred ccceeeeccceee-----chhhHHHHhhh
Q psy17516 64 MSSFSVKVGAMVK-----APLRTLLFISM 87 (264)
Q Consensus 64 ~v~~~v~~Ge~~~-----sGKSTLl~~l~ 87 (264)
++++++.+|-++- ||||||+.++.
T Consensus 16 ~~~i~~~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 16 NVDIEFQSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEecCCCeEEEECCCCCCHHHHHHHHH
Confidence 4788888884331 99999998764
No 202
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=68.71 E-value=2 Score=34.04 Aligned_cols=18 Identities=28% Similarity=0.102 Sum_probs=14.0
Q ss_pred ccceee------chhhHHHHhhhh
Q psy17516 71 VGAMVK------APLRTLLFISME 88 (264)
Q Consensus 71 ~Ge~~~------sGKSTLl~~l~~ 88 (264)
+|++++ |||||+++++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566665 999999998854
No 203
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=68.38 E-value=0.005 Score=53.98 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=43.4
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCE--EEeecCCCCCCHHH---------HHHHHHHHHHhhcCCeEEEEEeC
Q psy17516 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPL--YILDEVDAALDLSH---------TQNIGQMLKRHFKTSQFIIVSLK 234 (264)
Q Consensus 167 ~~~~~~LSGGekqrvaiA~~la~~l~~~~~i--lllDEPta~LD~~~---------~~~i~~ll~~~~~~~q~IiVTH~ 234 (264)
.+....+||| ||++++++ ++.+|++ +|+||.|++||... ...+.+.+..+.++.+.+.+.|+
T Consensus 167 ~qrl~~~~~G--~R~~i~e~----l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r 239 (261)
T 2eyu_A 167 SQRLLPKIGG--GRVLAYGL----LIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAME 239 (261)
T ss_dssp EEEEECCSSS--SSEEEEEE----ECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHH
T ss_pred EEEeEecCCC--CEEEEEEE----ecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHH
Confidence 3445567888 89998654 5678899 99999999999762 22344455556666666666665
No 204
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=68.26 E-value=2 Score=34.51 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=16.8
Q ss_pred ccceeeeccceee------chhhHHHHhhhh
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
.+|+...+|..+. |||||+.+.++.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3677778887665 999999987743
No 205
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=67.09 E-value=2.2 Score=34.10 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=12.6
Q ss_pred cccceeeeccceee-----chhhHHHHhhh
Q psy17516 63 SMSSFSVKVGAMVK-----APLRTLLFISM 87 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~-----sGKSTLl~~l~ 87 (264)
+++++..+...++- +|||||++.+.
T Consensus 15 ~~~~~~~~~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 15 ASLGLWNKHGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp ---------CEEEEEESTTSSHHHHHHHHH
T ss_pred HHhhccCCccEEEEECCCCCCHHHHHHHHh
Confidence 46788888887664 99999998664
No 206
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=66.56 E-value=1.8 Score=41.89 Aligned_cols=23 Identities=22% Similarity=-0.063 Sum_probs=18.8
Q ss_pred eeeeccceee------chhhHHHHhhhhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
..+++|++++ ||||||++++++.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHh
Confidence 3577899886 9999999998654
No 207
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=65.97 E-value=7.8 Score=30.61 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=31.7
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.++.++++||... +++.....+..++.....+..+|++|.+..
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 4568999999876 677777778888777555666777776653
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=64.23 E-value=7.3 Score=33.92 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=29.9
Q ss_pred CCCEEEeecCCCCC-CHHHHHHHHHHHHHhhc-CCeEEEEEeCc
Q psy17516 194 PAPLYILDEVDAAL-DLSHTQNIGQMLKRHFK-TSQFIIVSLKE 235 (264)
Q Consensus 194 ~~~illlDEPta~L-D~~~~~~i~~ll~~~~~-~~q~IiVTH~~ 235 (264)
.++++++||+..-- +......+..++..... +.++|++|++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 47899999998732 33667778888876554 56777777654
No 209
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=64.03 E-value=2.5 Score=33.10 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=15.4
Q ss_pred ccceee------chhhHHHHhhhhh
Q psy17516 71 VGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 71 ~Ge~~~------sGKSTLl~~l~~l 89 (264)
+|+.++ +|||||+++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 788775 9999999988643
No 210
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=63.25 E-value=2.6 Score=33.84 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHh
Q psy17516 183 LSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH 222 (264)
Q Consensus 183 iA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~ 222 (264)
.|++++ ..|.+.++| ++|+|..+...+.+.|.+.
T Consensus 132 ~a~~l~----~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 132 EARAFA----EKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHH----HHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHH----HHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 355544 456889999 9999999999999887653
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=62.85 E-value=2.5 Score=39.05 Aligned_cols=51 Identities=8% Similarity=-0.008 Sum_probs=38.7
Q ss_pred CC--CEEEeecCCCCCCHHHHHHHHHHHHHh-hcCCeEEEEEeCcch-Hhhcccee
Q psy17516 194 PA--PLYILDEVDAALDLSHTQNIGQMLKRH-FKTSQFIIVSLKEGM-FSNANVIF 245 (264)
Q Consensus 194 ~~--~illlDEPta~LD~~~~~~i~~ll~~~-~~~~q~IiVTH~~~~-~~~ad~l~ 245 (264)
+| ++.++|||++.+|+.......+.+... ...+++| +||.... .+.||++.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti-~sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL-EMKAKKEEQAIIEKVY 193 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS-SHHHHHHHHHHHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHH
Confidence 66 889999999999999999999988887 5543333 3887543 45677776
No 212
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=62.82 E-value=13 Score=32.50 Aligned_cols=23 Identities=4% Similarity=-0.380 Sum_probs=18.0
Q ss_pred cceeeeccceee------chhhHHHHhhhh
Q psy17516 65 SSFSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 65 v~~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
++|+.+ |.+++ +||||++..++.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 777766 88776 999999976643
No 213
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=62.49 E-value=1.4 Score=35.58 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=18.8
Q ss_pred cccceeeeccceee-----chhhHHHHhhh
Q psy17516 63 SMSSFSVKVGAMVK-----APLRTLLFISM 87 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~-----sGKSTLl~~l~ 87 (264)
++++|..+++.++- +|||||++.+.
T Consensus 17 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 17 QFLGLYKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp HHHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred HHhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 35677777887653 99999998663
No 214
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.96 E-value=2.3 Score=37.42 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=27.5
Q ss_pred CCCCEEEeecCCCCCCH---HHHHHHHHHHHHhhc-CCeEEEEEeCcchHh
Q psy17516 193 KPAPLYILDEVDAALDL---SHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS 239 (264)
Q Consensus 193 ~~~~illlDEPta~LD~---~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~ 239 (264)
..|.++++||++...+. .....+.+.+..... +..+|++||+...+.
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 33789999999886532 223333333322222 456788999876543
No 215
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=61.68 E-value=3.3 Score=34.48 Aligned_cols=23 Identities=0% Similarity=-0.129 Sum_probs=15.7
Q ss_pred ceeeeccceee------chhhHHHHhhhh
Q psy17516 66 SFSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 66 ~~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
|+...+|++++ +|||||++.+..
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 34445788776 899999987743
No 216
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.53 E-value=8 Score=33.65 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=32.8
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
++.++++||+. .|++.....+.+++.+......||++|++..
T Consensus 133 ~~~vliiDE~~-~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDEAD-SMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECCC-ccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 45699999954 5888888888888887766667888887654
No 217
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=61.04 E-value=3.3 Score=38.07 Aligned_cols=23 Identities=0% Similarity=-0.136 Sum_probs=18.1
Q ss_pred eeeeccceee------chhhHHHHhhhhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFISMEA 89 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~l 89 (264)
+++.+|++++ |||||||.++.++
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6667788776 9999999887543
No 218
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=60.97 E-value=6 Score=37.66 Aligned_cols=28 Identities=7% Similarity=-0.122 Sum_probs=21.7
Q ss_pred cccccceeeeccceee----chhhHHHHhhhh
Q psy17516 61 LGSMSSFSVKVGAMVK----APLRTLLFISME 88 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~----sGKSTLl~~l~~ 88 (264)
..+++++.+++|=++. +|||||+++++.
T Consensus 55 ~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 55 RFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp GTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred hhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456889999994443 999999998754
No 219
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=59.87 E-value=4.8 Score=37.62 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=23.2
Q ss_pred ccccceeeeccce--ee------chhhHHHHhhhhh
Q psy17516 62 GSMSSFSVKVGAM--VK------APLRTLLFISMEA 89 (264)
Q Consensus 62 ~~~v~~~v~~Ge~--~~------sGKSTLl~~l~~l 89 (264)
++++||++++|++ ++ ||||||++++.++
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4569999999998 65 9999999998765
No 220
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=59.78 E-value=34 Score=30.29 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=27.7
Q ss_pred CCCCEEEeecCCCCCCHH------------HHHHHHHHHHHhhc--CCeEEEEEeC
Q psy17516 193 KPAPLYILDEVDAALDLS------------HTQNIGQMLKRHFK--TSQFIIVSLK 234 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~------------~~~~i~~ll~~~~~--~~q~IiVTH~ 234 (264)
.+++++++|++++-.... ....++..|+.+++ +.++|+++|-
T Consensus 218 ~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 218 GIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp SSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 568999999999876432 13444555555553 6777777773
No 221
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=59.55 E-value=29 Score=30.42 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCCCEEEeecCCCCCCH--------HH----HHHHHHHHHHhhc--CCeEEEEEeC
Q psy17516 193 KPAPLYILDEVDAALDL--------SH----TQNIGQMLKRHFK--TSQFIIVSLK 234 (264)
Q Consensus 193 ~~~~illlDEPta~LD~--------~~----~~~i~~ll~~~~~--~~q~IiVTH~ 234 (264)
.+++++++|+.++-... .+ ...++..|+.+++ +.++|+++|-
T Consensus 202 ~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 202 PSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 56899999999986532 11 2344444555543 6777787773
No 222
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=58.86 E-value=3.3 Score=36.37 Aligned_cols=43 Identities=9% Similarity=-0.031 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHH-HHHHHHHHHHhhc
Q psy17516 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH-TQNIGQMLKRHFK 224 (264)
Q Consensus 173 LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~-~~~i~~ll~~~~~ 224 (264)
+|+|++. ++..+. ..+.|.++++ +.+|... ...+.+.+.++.+
T Consensus 101 ~~~~~~~---i~~~l~--~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~ 144 (301)
T 1ega_A 101 WTPDDEM---VLNKLR--EGKAPVILAV----NKVDNVQEKADLLPHLQFLAS 144 (301)
T ss_dssp CCHHHHH---HHHHHH--SSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHT
T ss_pred CCHHHHH---HHHHHH--hcCCCEEEEE----ECcccCccHHHHHHHHHHHHH
Confidence 8888863 333332 2356677777 6677665 5566677776654
No 223
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=58.37 E-value=9 Score=33.59 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=31.7
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
++.++++||+.. |+......+..++.+...+..+|++|++..
T Consensus 119 ~~~vliiDe~~~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGGG-SCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcch-hcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 468999999875 788878888887776545666778887654
No 224
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=57.94 E-value=3.9 Score=32.67 Aligned_cols=13 Identities=15% Similarity=-0.095 Sum_probs=10.7
Q ss_pred chhhHHHHhhhhh
Q psy17516 77 APLRTLLFISMEA 89 (264)
Q Consensus 77 sGKSTLl~~l~~l 89 (264)
+|||||++.+.+.
T Consensus 40 ~GKSTLl~~l~~~ 52 (191)
T 1oix_A 40 VGKSNLLSRFTRN 52 (191)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 9999999987543
No 225
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=57.67 E-value=4.7 Score=38.57 Aligned_cols=64 Identities=8% Similarity=0.079 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHH-------HHHHHHHhhcCCCC-EEEeecCCCCCCHHHHHHHHHHHHHhh---c--CCeEEEEEeCcc
Q psy17516 171 GELSGGQRSLVA-------LSLVLAMLLFKPAP-LYILDEVDAALDLSHTQNIGQMLKRHF---K--TSQFIIVSLKEG 236 (264)
Q Consensus 171 ~~LSGGekqrva-------iA~~la~~l~~~~~-illlDEPta~LD~~~~~~i~~ll~~~~---~--~~q~IiVTH~~~ 236 (264)
..+||||+|+.. ++ ..+..+..-|. ++++||+++.+|.. ...+.++|..+. . +..+|++||++.
T Consensus 267 ~~~s~G~~~~~~~~~pg~~~~-~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 267 EADRMMRPIPDPYWKPGDSMD-AQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHTTCCCBCTTC----------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHhhcCCcccccccccccchh-ccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 457788776420 11 01122334555 89999999888743 334445554432 2 567889999987
No 226
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=57.31 E-value=14 Score=31.23 Aligned_cols=75 Identities=13% Similarity=0.008 Sum_probs=50.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchHhhccceeEE
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMFSNANVIFRT 247 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~~~ad~l~~v 247 (264)
-..|-=-+| |.|+..||+. .+.+-++++.|+.. +|...+..+.++|+.+.- ...++||+.+..+...+..+-+|
T Consensus 98 ~~klnkK~r-rlAl~sALs~-k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~LiV~~~~~~~~a~RNip~v 173 (210)
T 3v2d_F 98 SYTLPKKVR-KKGLAMAVAD-RAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWV 173 (210)
T ss_dssp CCCCCHHHH-HHHHHHHHHH-HHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEEEECSCHHHHHHHTTCTTE
T ss_pred eeeCCHHHH-HHHHHHHHHH-HHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceEEEeCChhHHHHHhCcCCc
Confidence 344544444 5677777764 44556899999975 667778889999988753 24566666666666666666554
Q ss_pred E
Q psy17516 248 K 248 (264)
Q Consensus 248 ~ 248 (264)
.
T Consensus 174 ~ 174 (210)
T 3v2d_F 174 V 174 (210)
T ss_dssp E
T ss_pred e
Confidence 3
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=56.82 E-value=23 Score=32.86 Aligned_cols=81 Identities=7% Similarity=0.076 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHhhccccccc--ccchhh---HHHHHhhhhcc---cccceeeeccce
Q psy17516 4 HEVTRKYQKLKEQRDKLERTVDKKAQLSL-RNEENQFKVGAMV--KAPLKT---LLFISMKKYLG---SMSSFSVKVGAM 74 (264)
Q Consensus 4 ~~~~~~~~~l~~~~~~l~~~vn~~a~~~~-~~~~~~y~~~~~~--~~~~~~---~~~~~~~~~~~---~~v~~~v~~Ge~ 74 (264)
+.+..-+++++..+-.- .||.....++ +++.++....+.. ..|-.. .+.-++...+. .+++|+ +|++
T Consensus 25 ~~~~~~l~e~~~~Ll~a--dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~i~l~--~~~v 100 (425)
T 2ffh_A 25 EDLKATLREIRRALMDA--DVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLK--DRNL 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHTTSSCCCCCCC--SSEE
T ss_pred HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHhCCCcccccCC--CCeE
Confidence 34455566666555444 5777666553 3444433322211 111111 11112222222 357777 8887
Q ss_pred ee------chhhHHHHhhhh
Q psy17516 75 VK------APLRTLLFISME 88 (264)
Q Consensus 75 ~~------sGKSTLl~~l~~ 88 (264)
++ +||||++..++.
T Consensus 101 i~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 75 999999977754
No 228
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=56.41 E-value=14 Score=30.60 Aligned_cols=41 Identities=10% Similarity=0.234 Sum_probs=28.1
Q ss_pred cCCCCEEEeecCCC-CCCHHHHHHHHHHHHHhhcCCeEEEEE
Q psy17516 192 FKPAPLYILDEVDA-ALDLSHTQNIGQMLKRHFKTSQFIIVS 232 (264)
Q Consensus 192 ~~~~~illlDEPta-~LD~~~~~~i~~ll~~~~~~~q~IiVT 232 (264)
++...++++||.+. ++|.......++.+.....+.++|+.|
T Consensus 174 l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 174 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred hcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 57789999999987 577766544444444444567777655
No 229
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=56.15 E-value=4.1 Score=32.61 Aligned_cols=13 Identities=15% Similarity=-0.095 Sum_probs=10.8
Q ss_pred chhhHHHHhhhhh
Q psy17516 77 APLRTLLFISMEA 89 (264)
Q Consensus 77 sGKSTLl~~l~~l 89 (264)
+|||||++.+.+.
T Consensus 16 ~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 16 VGKSNLLSRFTRN 28 (199)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 9999999887543
No 230
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=55.75 E-value=4.4 Score=32.22 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=16.2
Q ss_pred eeeeccceee------chhhHHHHhhhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
+...+|.++. |||||+.+.++.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3445677765 999999988754
No 231
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=55.72 E-value=4.6 Score=38.23 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=19.1
Q ss_pred cccceeeeccceee------chhhHHHHhhh
Q psy17516 63 SMSSFSVKVGAMVK------APLRTLLFISM 87 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~------sGKSTLl~~l~ 87 (264)
++++|++.+| +.+ ||||||+..+.
T Consensus 52 ~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp SCEEEECCCS-EEEEEESHHHHHHHHTHHHH
T ss_pred eeEEEecCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4688888888 554 99999998763
No 232
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=55.36 E-value=4 Score=36.56 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=41.8
Q ss_pred CCCcccc-cccCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-C-CeEEEEEe
Q psy17516 161 AFGGLWK-ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-T-SQFIIVSL 233 (264)
Q Consensus 161 ~l~~~~~-~~~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~-~q~IiVTH 233 (264)
..+|... ....+.+++++++..+++.+. ..|+.+++.-..+..|.. ...+..+++.+.. + .+++|+|.
T Consensus 142 DtPG~~~~~~~~q~~~~~~~~~~~~~~~i----~~~d~iilvv~~~~~~~~-~~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 142 DLPGLTKVAVDGQSDSIVKDIENMVRSYI----EKPNCIILAISPANQDLA-TSDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp ECCCBCSSCCTTCCSSHHHHHHHHHHHHH----HSSSEEEEEEEETTSCGG-GCHHHHHHHHSCTTCTTEEEEEEC
T ss_pred ECCCCCcCCcCCCchhHHHHHHHHHHHHh----hcCCeEEEEeecccCCcC-CHHHHHHHHHhcccCCCEEEEEeC
Confidence 4455432 233567889999999987753 577877777333334433 3556667777654 3 45667775
No 233
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=54.86 E-value=56 Score=27.61 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=28.1
Q ss_pred CCCEEEeecCCCCC--------CHHHHHHHHHHHHHhhcCCeEEEEEeC
Q psy17516 194 PAPLYILDEVDAAL--------DLSHTQNIGQMLKRHFKTSQFIIVSLK 234 (264)
Q Consensus 194 ~~~illlDEPta~L--------D~~~~~~i~~ll~~~~~~~q~IiVTH~ 234 (264)
++.++++||.+.-. +......+.+++.+...+..+|++|..
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 45799999998532 566666777777665445667777753
No 234
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=54.34 E-value=26 Score=28.56 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEE-e----CcchHhhccceeEEE
Q psy17516 179 SLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS-L----KEGMFSNANVIFRTK 248 (264)
Q Consensus 179 qrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVT-H----~~~~~~~ad~l~~v~ 248 (264)
.|.|+..||+. .+.+-++++.|+-. ++...+..+.++|+.+.-...++||+ . +..++..+..+-+|.
T Consensus 74 rrlAl~sALs~-k~~~~~lvVvd~~~--~~~~KTK~~~~~l~~l~~~~~~LiV~~~~~~~~~~~~~a~RNip~v~ 145 (175)
T 2ftc_D 74 RALGLKVALTV-KLAQDDLHIMDSLE--LPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFN 145 (175)
T ss_pred HHHHHHHHHHH-hccCCCEEEEeccc--CCCCCHHHHHHHHHHCCCCCceEEEECCCccCCHHHHHHHhCCCCcE
Confidence 56777777764 45566899999863 56667888888998775322344444 3 455666666665543
No 235
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=54.07 E-value=16 Score=31.61 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=32.1
Q ss_pred CCCEEEeecCCCCCC-HHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 194 PAPLYILDEVDAALD-LSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 194 ~~~illlDEPta~LD-~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
++.++++||+.. |. ......+..++.+...+..+|++|.+..
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 678999999986 44 6667777777877666788888887644
No 236
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=53.99 E-value=14 Score=28.14 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=31.3
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
...++++||++. |++..+..+.+++.....+..+|..|...
T Consensus 76 ~~g~l~ldei~~-l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHPEH-LTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECGGG-SCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred CCcEEEEcChHH-CCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 347999999985 89988889988885544456778777653
No 237
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=53.68 E-value=8.4 Score=34.00 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=31.4
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
+.+++++||++. |.......+.+.+.+-..++.||++|+++.
T Consensus 108 ~~kvviIdead~-l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchhh-cCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 468999999986 677767777777765444677888998864
No 238
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=53.17 E-value=3.7 Score=33.53 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=16.6
Q ss_pred eeeeccceee------chhhHHHHhhhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
+.+.+|.++. |||||+.+.+..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456777775 999999988754
No 239
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=51.81 E-value=3.4 Score=37.38 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=17.1
Q ss_pred hcccccceeeeccceee---chhhHHHHhhh
Q psy17516 60 YLGSMSSFSVKVGAMVK---APLRTLLFISM 87 (264)
Q Consensus 60 ~~~~~v~~~v~~Ge~~~---sGKSTLl~~l~ 87 (264)
...++++|.| -+++ +|||||++.+.
T Consensus 31 ~~~~~~~~~I---~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 31 SVKKGFEFTL---MVVGESGLGKSTLINSLF 58 (361)
T ss_dssp HHHHCCEECE---EECCCTTSCHHHHHHHHT
T ss_pred eecCCCCEEE---EEEcCCCCCHHHHHHHHh
Confidence 3444667776 3444 99999998763
No 240
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=51.80 E-value=5.7 Score=35.69 Aligned_cols=46 Identities=11% Similarity=-0.034 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHh----hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhh
Q psy17516 174 SGGQRSLVALSLVLAML----LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 174 SGGekqrvaiA~~la~~----l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~ 223 (264)
+++++++..+...+... ....|+++. +||++..+...+.+.|.+..
T Consensus 228 ~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~----iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 228 VPARRIQAEYVSALKLLRKRSQVWKPKVIR----ISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHHHHHTTCC-----CCCEEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCceEEE----EecCCCCCHHHHHHHHHHHH
Confidence 35566666665543210 011345554 99999999999999988754
No 241
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=51.67 E-value=6 Score=30.93 Aligned_cols=12 Identities=25% Similarity=0.016 Sum_probs=10.2
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 15 ~GKStLl~~l~~ 26 (172)
T 2gj8_A 15 AGKSSLLNALAG 26 (172)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHhC
Confidence 999999987753
No 242
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=50.75 E-value=13 Score=32.57 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=16.1
Q ss_pred eeeeccceee------chhhHHHHhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFIS 86 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l 86 (264)
--+.+|+++. +|||||+..+
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~i 88 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQ 88 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 4589999875 9999998654
No 243
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=50.60 E-value=5.8 Score=32.36 Aligned_cols=12 Identities=33% Similarity=0.005 Sum_probs=10.4
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+++++..
T Consensus 16 sGKSTl~~~L~~ 27 (227)
T 1cke_A 16 AGKGTLCKAMAE 27 (227)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998853
No 244
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=50.23 E-value=10 Score=33.43 Aligned_cols=42 Identities=5% Similarity=0.069 Sum_probs=32.8
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
+.+++|+||+.. |.......+...|.+-..++.||++|+++.
T Consensus 82 ~~kvviIdead~-lt~~a~naLLk~LEep~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 82 TRKYVIVHDCER-MTQQAANAFLKALEEPPEYAVIVLNTRRWH 123 (305)
T ss_dssp SSEEEEETTGGG-BCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred CceEEEeccHHH-hCHHHHHHHHHHHhCCCCCeEEEEEECChH
Confidence 358999999986 677777778888877666778889998763
No 245
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=50.16 E-value=3.7 Score=34.94 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=25.2
Q ss_pred HHHhHHHHcCCCcccccccCCCCHHHHHHHHHHHHHH
Q psy17516 152 ILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLA 188 (264)
Q Consensus 152 ~~~~l~~~v~l~~~~~~~~~~LSGGekqrvaiA~~la 188 (264)
.+..++..+|. ...++.+..||||+.|+++.+++|.
T Consensus 54 ~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~ 89 (265)
T 1b9m_A 54 AINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLI 89 (265)
T ss_dssp HHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHH
T ss_pred HHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHH
Confidence 45667777787 6778899999999999999999875
No 246
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=49.88 E-value=6.3 Score=31.64 Aligned_cols=12 Identities=17% Similarity=-0.033 Sum_probs=10.5
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+.++++.
T Consensus 12 sGKSTl~~~L~~ 23 (204)
T 2if2_A 12 CGKSTVAQMFRE 23 (204)
T ss_dssp SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999998754
No 247
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.66 E-value=6.2 Score=31.06 Aligned_cols=11 Identities=18% Similarity=-0.318 Sum_probs=9.8
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.++
T Consensus 15 sGKST~~~~La 25 (186)
T 3cm0_A 15 AGKGTQASRLA 25 (186)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998774
No 248
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=49.48 E-value=6.3 Score=31.77 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=10.7
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+.+++..
T Consensus 13 sGKST~~~~La~ 24 (206)
T 1jjv_A 13 SGKTTIANLFTD 24 (206)
T ss_dssp SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
Confidence 999999998865
No 249
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=48.95 E-value=11 Score=31.87 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=28.8
Q ss_pred cCCCCEEEeecCCCCC----------CHHHHHHHHHHHHHhh---c-CC-eEEEEEeCcch
Q psy17516 192 FKPAPLYILDEVDAAL----------DLSHTQNIGQMLKRHF---K-TS-QFIIVSLKEGM 237 (264)
Q Consensus 192 ~~~~~illlDEPta~L----------D~~~~~~i~~ll~~~~---~-~~-q~IiVTH~~~~ 237 (264)
...|.++++||.+.-. +......+..++..+. . .. .+|..|+++..
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 4567899999997642 5566677777777652 2 23 34456655443
No 250
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=48.49 E-value=12 Score=36.26 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=41.3
Q ss_pred CCCcccccccCCCCHH-HHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeC
Q psy17516 161 AFGGLWKESLGELSGG-QRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLK 234 (264)
Q Consensus 161 ~l~~~~~~~~~~LSGG-ekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~ 234 (264)
+.|+....+.+.|+.+ +++...+.+. .+..+.-++++.+++.+|..+. ...++++++.. ..+++|+||=
T Consensus 153 DePGi~~~~t~~LD~~~~~~i~~li~~----~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 153 DLPGITRVAVGNQPADIGYKIKTLIKK----YIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp ECCC------CCSSCSHHHHHHHHHHH----HTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEECG
T ss_pred eCCCccccccCCCCHHHHHHHHHHHHH----HHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecch
Confidence 4444444445555544 4455566543 3466778888999999998854 46677777653 4567788873
No 251
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.16 E-value=29 Score=32.06 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=31.1
Q ss_pred HHHHhhcCCCCEEEeecCCCCCC----------HHHHHHHHHHHHHhh---cCC--eEEEEEeCcchH
Q psy17516 186 VLAMLLFKPAPLYILDEVDAALD----------LSHTQNIGQMLKRHF---KTS--QFIIVSLKEGMF 238 (264)
Q Consensus 186 ~la~~l~~~~~illlDEPta~LD----------~~~~~~i~~ll~~~~---~~~--q~IiVTH~~~~~ 238 (264)
+|..|....|.++++||.++-.- ......+..+|..+- ... -+|..|.++..+
T Consensus 233 lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 233 LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 34444556788999999997542 223334555665542 222 345678776654
No 252
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=47.91 E-value=39 Score=25.48 Aligned_cols=40 Identities=5% Similarity=0.071 Sum_probs=30.0
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCc
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKE 235 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~ 235 (264)
..++++||++. |++.....+.+++.+... +..+|.+|.+.
T Consensus 76 ~~~l~lDei~~-l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 76 GGVLYVGDIAQ-YSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TSEEEEEECTT-CCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCeEEEeChHH-CCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 47999999885 788888888888876532 45677777643
No 253
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=47.81 E-value=22 Score=30.18 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=30.6
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
.++.++++||+.. +++.....+..++.+...+..||++|.+.
T Consensus 109 ~~~~vliiDe~~~-l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADA-LTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCCeEEEEeCCCc-CCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 3568999999875 67777777888887655556677777654
No 254
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=46.97 E-value=7 Score=30.13 Aligned_cols=12 Identities=8% Similarity=-0.105 Sum_probs=10.2
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 14 vGKStL~~~l~~ 25 (165)
T 2wji_A 14 VGKSTIFNALTG 25 (165)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHhC
Confidence 899999987754
No 255
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=46.72 E-value=0.27 Score=45.62 Aligned_cols=21 Identities=5% Similarity=-0.173 Sum_probs=16.9
Q ss_pred eeeccceee------chhhHHHHhhhh
Q psy17516 68 SVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 68 ~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
.+++|..++ +|||||++++.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 456787776 999999998855
No 256
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.30 E-value=35 Score=31.76 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=31.1
Q ss_pred HHHhhcCCCCEEEeecCCCCC----------CHHHHHHHHHHHHHhh---c--CCeEEEEEeCcchH
Q psy17516 187 LAMLLFKPAPLYILDEVDAAL----------DLSHTQNIGQMLKRHF---K--TSQFIIVSLKEGMF 238 (264)
Q Consensus 187 la~~l~~~~~illlDEPta~L----------D~~~~~~i~~ll~~~~---~--~~q~IiVTH~~~~~ 238 (264)
|..|....|.++++||.++-. |......+..+|..+- . +.-+|..|.++..+
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 444455678899999999744 2223344455665542 2 23455678877654
No 257
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=45.91 E-value=30 Score=29.61 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeC-----------cchHhhccceeEEE
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK-----------EGMFSNANVIFRTK 248 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~-----------~~~~~~ad~l~~v~ 248 (264)
.+.+++++||.--..| ...+.+.+.+ .+..+|+.-++ +.+++.||.+..++
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 5679999999988754 5555655554 35566666676 56789999987754
No 258
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=45.83 E-value=46 Score=23.74 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|-...+.|. ..+.+.+++...+..+|++|....
T Consensus 45 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNG---IQVLETLRKRQYSGIIIIVSAKND 85 (134)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHHTTCCSEEEEEECC--
T ss_pred cCCCEEEEecCCCCCCh---HHHHHHHHhcCCCCeEEEEeCCCC
Confidence 47899999987766654 366777777666677888886543
No 259
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=45.57 E-value=7.8 Score=30.17 Aligned_cols=12 Identities=8% Similarity=-0.105 Sum_probs=10.2
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 18 vGKStL~~~l~~ 29 (188)
T 2wjg_A 18 VGKSTIFNALTG 29 (188)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHhC
Confidence 999999987754
No 260
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=45.28 E-value=12 Score=29.96 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCCEEEeecCCC-CCCHHHHHHHH-HHHHHh-hcCCeEEEEEeC
Q psy17516 194 PAPLYILDEVDA-ALDLSHTQNIG-QMLKRH-FKTSQFIIVSLK 234 (264)
Q Consensus 194 ~~~illlDEPta-~LD~~~~~~i~-~ll~~~-~~~~q~IiVTH~ 234 (264)
.++++++||+.. .+++.....++ .++... ..+..+|++|+.
T Consensus 115 ~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 115 KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 357999999943 23333333344 455543 345677777774
No 261
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.19 E-value=18 Score=30.80 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=30.8
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
++.++++||... ++......+..++.+...+..+|++|.+..
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 468999999875 566666777777776555667888887643
No 262
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=44.92 E-value=42 Score=28.47 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcC-CeEEEEEeC--c---chHhhccceeEEE
Q psy17516 179 SLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT-SQFIIVSLK--E---GMFSNANVIFRTK 248 (264)
Q Consensus 179 qrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~-~q~IiVTH~--~---~~~~~ad~l~~v~ 248 (264)
.|.|+..||+. .+..-++++.|+. .++...+..+.++|+.+.-. ..++||+.+ . .++..+..+-++.
T Consensus 105 rrlAl~sALs~-k~~~~~LvVvd~~--~~~~~KTK~~~~~L~~l~~~~~~~LiV~~~~~~~~~n~~~a~RNip~v~ 177 (225)
T 1dmg_A 105 KKLALRSALSV-KYRENKLLVLDDL--KLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVK 177 (225)
T ss_dssp HHHHHHHHHHH-HHHTTCEEEESCC--CCSSCCHHHHHHHHHHTTCTTSCEEEEECCCSHHHHHHHHHHTTCTTEE
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeec--ccCCCCHHHHHHHHHHcCCCCCCEEEEECCCccchHHHHHHHhCCCCCE
Confidence 56777777765 3445589999986 46777788889999887532 345666644 3 4556666665544
No 263
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=44.86 E-value=7 Score=37.33 Aligned_cols=27 Identities=11% Similarity=-0.057 Sum_probs=20.1
Q ss_pred cccccceeeeccceee------chhhHHHHhhhh
Q psy17516 61 LGSMSSFSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 61 ~~~~v~~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
....+++++ +|+.+. +|||||+++++.
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHH
Confidence 334566777 788775 999999998754
No 264
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=44.80 E-value=34 Score=29.80 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=31.8
Q ss_pred hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeC
Q psy17516 191 LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK 234 (264)
Q Consensus 191 l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~ 234 (264)
+..+.+++++||+...+.......+..++.+...++.||++|.+
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 45678999999998867776677777777765545556666644
No 265
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=44.80 E-value=7.7 Score=30.50 Aligned_cols=12 Identities=33% Similarity=0.185 Sum_probs=10.3
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 13 vGKStLl~~l~~ 24 (184)
T 2zej_A 13 SGKTTLLQQLMK 24 (184)
T ss_dssp SSHHHHHHHHTC
T ss_pred CCHHHHHHHHhc
Confidence 899999987754
No 266
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=43.96 E-value=67 Score=23.64 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=29.6
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
-.+|+++|+|-...+.|.. .+++.|++......+|++|....
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGGE---VFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp TSCCSEEEEESSCSSSCHH---HHHHHHHHHCTTSEEEEEECGGG
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhCCCCcEEEEecCCC
Confidence 3578999999877666543 66667776555677888886544
No 267
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=43.76 E-value=10 Score=34.46 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.3
Q ss_pred eeeccceee------chhhHHHHhhh
Q psy17516 68 SVKVGAMVK------APLRTLLFISM 87 (264)
Q Consensus 68 ~v~~Ge~~~------sGKSTLl~~l~ 87 (264)
-+++|+++. +|||||+..++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHH
Confidence 478998875 99999997664
No 268
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=43.54 E-value=73 Score=22.43 Aligned_cols=42 Identities=7% Similarity=-0.111 Sum_probs=28.8
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
-.+|+++++|--..+.|. ..+.+.+++...+..+|++|....
T Consensus 45 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 86 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSG---VELLRNLGDLKINIPSIVITGHGD 86 (126)
T ss_dssp GCCSEEEEEECCSTTSCH---HHHHHHHHHTTCCCCEEEEECTTC
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHHhcCCCCCEEEEECCCC
Confidence 357899999976655554 356667776555667888887644
No 269
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=43.53 E-value=8.6 Score=30.88 Aligned_cols=11 Identities=0% Similarity=-0.333 Sum_probs=9.7
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 29 sGKSTla~~L~ 39 (202)
T 3t61_A 29 SGKSSVGEAIA 39 (202)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998774
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=43.43 E-value=8.5 Score=31.11 Aligned_cols=19 Identities=11% Similarity=-0.106 Sum_probs=13.9
Q ss_pred eeccceee------chhhHHHHhhh
Q psy17516 69 VKVGAMVK------APLRTLLFISM 87 (264)
Q Consensus 69 v~~Ge~~~------sGKSTLl~~l~ 87 (264)
+.+|.++. ||||||.+.+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHH
Confidence 34566554 99999998774
No 271
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=43.32 E-value=25 Score=28.19 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=27.8
Q ss_pred CCCCEEEeecCCCCCC-HHHHHHHHHHHHHhhc-CCe-EEEEEeC
Q psy17516 193 KPAPLYILDEVDAALD-LSHTQNIGQMLKRHFK-TSQ-FIIVSLK 234 (264)
Q Consensus 193 ~~~~illlDEPta~LD-~~~~~~i~~ll~~~~~-~~q-~IiVTH~ 234 (264)
..+.++++||+..--+ ......+..++..... +.. +|++|+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3578999999876432 2236667777776554 343 7777774
No 272
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=42.81 E-value=4.7 Score=36.88 Aligned_cols=26 Identities=8% Similarity=-0.116 Sum_probs=19.0
Q ss_pred cccceeeeccce--ee------chhhHHHHhhhh
Q psy17516 63 SMSSFSVKVGAM--VK------APLRTLLFISME 88 (264)
Q Consensus 63 ~~v~~~v~~Ge~--~~------sGKSTLl~~l~~ 88 (264)
+.+++.+++|+. +. +||||+.++++.
T Consensus 13 ~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 13 QLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 346667778877 32 999999987753
No 273
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=42.80 E-value=8.3 Score=37.85 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=28.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcch
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGM 237 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~~ 237 (264)
.+..++++| |+.++++.... ++..+.. .+..+|+|.|+...
T Consensus 98 ad~~ilVvD-~~~g~~~qt~~-~~~~~~~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 98 ADAALVAVS-AEAGVQVGTER-AWTVAER--LGLPRMVVVTKLDK 138 (665)
T ss_dssp CSEEEEEEE-TTTCSCHHHHH-HHHHHHH--TTCCEEEEEECGGG
T ss_pred cCcEEEEEc-CCcccchhHHH-HHHHHHH--ccCCEEEEecCCch
Confidence 466788889 99999987663 3334333 25667888888654
No 274
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=42.72 E-value=21 Score=30.00 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=34.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeC-----------cchHhhccceeEEE
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLK-----------EGMFSNANVIFRTK 248 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~-----------~~~~~~ad~l~~v~ 248 (264)
.+++++++||.-- |+..... ++..|.+ .+..+|++-|+ +.++..||.+..++
T Consensus 88 ~~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3578999999864 7765332 2233333 26778888882 45678999998754
No 275
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=42.46 E-value=75 Score=22.86 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=27.9
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
-.+|+++|+|- . ...+...+++.+++......+|++|....
T Consensus 46 ~~~~dlvi~d~-~---~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (142)
T 2qxy_A 46 REKIDLVFVDV-F---EGEESLNLIRRIREEFPDTKVAVLSAYVD 86 (142)
T ss_dssp TSCCSEEEEEC-T---TTHHHHHHHHHHHHHCTTCEEEEEESCCC
T ss_pred ccCCCEEEEeC-C---CCCcHHHHHHHHHHHCCCCCEEEEECCCC
Confidence 35789999997 4 33445567777776555677888876543
No 276
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=42.27 E-value=36 Score=29.26 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=25.9
Q ss_pred CCCCEEEeecCCCC-------------CCHHHHHHHHHHHHHhhc--CCeEEEEEeCcchH
Q psy17516 193 KPAPLYILDEVDAA-------------LDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGMF 238 (264)
Q Consensus 193 ~~~~illlDEPta~-------------LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~~ 238 (264)
..|.++++||.++- ........++..+..+.. +..+|..|+++..+
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 45789999998741 112223445555543332 33455678776543
No 277
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=42.18 E-value=10 Score=28.32 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 14 ~GKssl~~~l~ 24 (166)
T 2ce2_X 14 VGKSALTIQLI 24 (166)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 278
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=41.98 E-value=10 Score=31.31 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 13 sGKsTq~~~L~ 23 (205)
T 4hlc_A 13 SGKTTVINEVY 23 (205)
T ss_dssp SCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 99999987663
No 279
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=41.50 E-value=10 Score=28.70 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 14 ~GKssli~~l~ 24 (172)
T 2erx_A 14 VGKSSLVLRFV 24 (172)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999997663
No 280
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=41.11 E-value=81 Score=23.08 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=29.8
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
-.+|+++|+|--..+.|. ..+++.|++...+..+|++|....
T Consensus 64 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~~~ 105 (150)
T 4e7p_A 64 KESVDIAILDVEMPVKTG---LEVLEWIRSEKLETKVVVVTTFKR 105 (150)
T ss_dssp TSCCSEEEECSSCSSSCH---HHHHHHHHHTTCSCEEEEEESCCC
T ss_pred ccCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCeEEEEeCCCC
Confidence 367899999976655554 466777777656777888887644
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=40.80 E-value=10 Score=29.11 Aligned_cols=11 Identities=9% Similarity=-0.312 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 12 sGKsT~~~~L~ 22 (173)
T 3kb2_A 12 CFKSTVAAKLS 22 (173)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998774
No 282
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=40.63 E-value=10 Score=28.63 Aligned_cols=11 Identities=0% Similarity=-0.134 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 16 ~GKssl~~~l~ 26 (168)
T 1z2a_A 16 VGKSSMIQRYC 26 (168)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999998663
No 283
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.56 E-value=15 Score=30.84 Aligned_cols=21 Identities=24% Similarity=0.063 Sum_probs=14.6
Q ss_pred eeeccceee------chhhHHHHhhhh
Q psy17516 68 SVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 68 ~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
...++.++. |||||+.+.+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345565553 999999987743
No 284
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=40.45 E-value=90 Score=21.95 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=27.1
Q ss_pred CCCEEEeecCCCC-CCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 194 PAPLYILDEVDAA-LDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 194 ~~~illlDEPta~-LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
+|+++|+|--..+ .|. ..+++.+++......+|++|...
T Consensus 50 ~~dlvi~d~~l~~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDG---WQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp CCCEEEEESCCSSSSCH---HHHHHHHHHHCTTCCEEEEESSC
T ss_pred CCCEEEEeeeCCCCCCH---HHHHHHHHhcCCCCCEEEEeCCc
Confidence 7899999976554 554 35666777655566788887654
No 285
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=40.22 E-value=10 Score=28.42 Aligned_cols=11 Identities=18% Similarity=0.036 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 15 ~GKssl~~~l~ 25 (168)
T 1u8z_A 15 VGKSALTLQFM 25 (168)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 286
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=40.18 E-value=11 Score=28.74 Aligned_cols=11 Identities=9% Similarity=-0.049 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 20 ~GKssli~~l~ 30 (181)
T 2fn4_A 20 VGKSALTIQFI 30 (181)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997653
No 287
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=39.81 E-value=11 Score=28.22 Aligned_cols=10 Identities=10% Similarity=-0.167 Sum_probs=8.7
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 14 ~GKSsli~~l 23 (167)
T 1kao_A 14 VGKSALTVQF 23 (167)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999765
No 288
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=39.65 E-value=11 Score=29.86 Aligned_cols=11 Identities=18% Similarity=-0.061 Sum_probs=9.5
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 15 sGKsT~~~~L~ 25 (204)
T 2v54_A 15 SGKTTQCMNIM 25 (204)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998764
No 289
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=39.58 E-value=33 Score=30.64 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=37.0
Q ss_pred CCCCEEEeecCCCCCC---HHHHHHHHHHHHHhhc-CCeEEEEEeCcchHh
Q psy17516 193 KPAPLYILDEVDAALD---LSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFS 239 (264)
Q Consensus 193 ~~~~illlDEPta~LD---~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~ 239 (264)
..|.++++||.=.-++ +.....+.+++++..+ +..++++||++.-+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 3468999999988885 5667777888887765 788999999987553
No 290
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=39.54 E-value=8.8 Score=35.84 Aligned_cols=25 Identities=16% Similarity=-0.096 Sum_probs=21.4
Q ss_pred ccceeeeccceee------chhhHHHHhhhh
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
|+.+.+.+|+.++ +|||||+..+..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 6889999999887 999999987643
No 291
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=39.26 E-value=11 Score=28.39 Aligned_cols=11 Identities=9% Similarity=-0.103 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 14 ~GKssli~~l~ 24 (167)
T 1c1y_A 14 VGKSALTVQFV 24 (167)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999998663
No 292
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=39.18 E-value=11 Score=29.44 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=10.0
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 59 ~GKSsll~~l~~ 70 (193)
T 2ged_A 59 SGKTSLLTLLTT 70 (193)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 999999987643
No 293
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=39.03 E-value=11 Score=29.18 Aligned_cols=11 Identities=0% Similarity=-0.022 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 18 ~GKSsli~~l~ 28 (208)
T 3clv_A 18 VGKSSIVLRLT 28 (208)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999997663
No 294
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=38.82 E-value=12 Score=28.25 Aligned_cols=10 Identities=0% Similarity=-0.027 Sum_probs=8.8
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 14 ~GKssli~~l 23 (170)
T 1ek0_A 14 VGKSSIVLRF 23 (170)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8999999765
No 295
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=38.75 E-value=12 Score=28.29 Aligned_cols=11 Identities=18% Similarity=-0.176 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 13 ~GKSsli~~l~ 23 (166)
T 3q72_A 13 VGKSALARIFG 23 (166)
T ss_dssp SSHHHHHHHHC
T ss_pred CCHHHHHHHHc
Confidence 89999998663
No 296
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=38.71 E-value=12 Score=29.21 Aligned_cols=11 Identities=0% Similarity=-0.058 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 34 ~GKSsli~~l~ 44 (195)
T 1svi_A 34 VGKSSFINSLI 44 (195)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998664
No 297
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=38.66 E-value=11 Score=30.20 Aligned_cols=11 Identities=36% Similarity=0.069 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+++.+.
T Consensus 11 sGKsTl~~~L~ 21 (214)
T 1gtv_A 11 AGKRTLVEKLS 21 (214)
T ss_dssp EEHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998763
No 298
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=38.64 E-value=12 Score=28.16 Aligned_cols=11 Identities=18% Similarity=0.009 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 14 ~GKssli~~l~ 24 (170)
T 1g16_A 14 VGKSCLLVRFV 24 (170)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999998664
No 299
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=38.58 E-value=89 Score=21.43 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=28.3
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++++|-...+.|. ..+.+.+++......+|++|....
T Consensus 44 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 84 (116)
T 3a10_A 44 GNYDLVILDIEMPGISG---LEVAGEIRKKKKDAKIILLTAYSH 84 (116)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHHHCTTCCEEEEESCGG
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHccCCCCeEEEEECCcc
Confidence 57899999986665554 356667776555667888876543
No 300
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=38.57 E-value=78 Score=23.03 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=28.2
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
.+|+++|+|-...+.|. ..+++.|++......+|++|-..
T Consensus 48 ~~~dlvllD~~lp~~~g---~~l~~~l~~~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDG---IELVDNILKLYPDCSVIFMSGYS 87 (141)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHHCTTCEEEEECCST
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCCCcEEEEeCCC
Confidence 57899999987666654 36666777655566778777653
No 301
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=38.51 E-value=28 Score=30.80 Aligned_cols=26 Identities=15% Similarity=-0.087 Sum_probs=16.9
Q ss_pred cccceeeeccceee---chhhHHHHhhhh
Q psy17516 63 SMSSFSVKVGAMVK---APLRTLLFISME 88 (264)
Q Consensus 63 ~~v~~~v~~Ge~~~---sGKSTLl~~l~~ 88 (264)
++++++++.=-+++ ||||||++.+.+
T Consensus 28 ~~i~~~lp~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 28 PTLWDSLPAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp ----CCCCEEEEECBTTSSHHHHHHHHHT
T ss_pred ccccccCCEEEEECCCCCcHHHHHHHHhC
Confidence 34788888544555 999999998755
No 302
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=38.49 E-value=44 Score=31.30 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=14.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy17516 203 VDAALDLSHTQNIGQMLKRH 222 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~ 222 (264)
++|+....+...+.+.|.+.
T Consensus 376 ~vSAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 376 GISALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp ECBTTTTBSHHHHHHHHTHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 47777777777777766553
No 303
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=38.46 E-value=12 Score=28.27 Aligned_cols=11 Identities=0% Similarity=0.102 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 17 ~GKSsli~~l~ 27 (170)
T 1z0j_A 17 VGKSSIMWRFV 27 (170)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999998663
No 304
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=38.41 E-value=37 Score=27.06 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=29.8
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHh---hcCCeEEEEEeCcchHhhcccee
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRH---FKTSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~---~~~~q~IiVTH~~~~~~~ad~l~ 245 (264)
++++-..|+.+.+=|.. .+.+.+.++ ....+++||+|++.+-..+..+.
T Consensus 71 ~~~~~~~~~L~~~~~~~---~~~~~l~~~~~~~~~~~vllVgH~P~l~~l~~~L~ 122 (172)
T 3f2i_A 71 SCQLEESNHLAPNGNIF---NWLDYWLKPKNFPENAQIAIVGHEPCLSNWTEILL 122 (172)
T ss_dssp CSCEEECGGGSTTCCHH---HHHHHTHHHHCCCTTCEEEEEECTTHHHHHHHHHH
T ss_pred CCCeEECcccCCccCHH---HHHHHHHHhccCCCCCEEEEEeCChHHHHHHHHHh
Confidence 34566666654444443 455555542 23568999999998876665544
No 305
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=38.33 E-value=12 Score=28.94 Aligned_cols=11 Identities=18% Similarity=0.042 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 34 ~GKSsli~~l~ 44 (195)
T 3pqc_A 34 VGKSSLLNALF 44 (195)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997653
No 306
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=38.29 E-value=2.4 Score=37.34 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=19.3
Q ss_pred eeeccceee------chhhHHHHhhhhhc--cchhHHH
Q psy17516 68 SVKVGAMVK------APLRTLLFISMEAM--TKKSIVE 97 (264)
Q Consensus 68 ~v~~Ge~~~------sGKSTLl~~l~~l~--~~~~~~~ 97 (264)
++.+|++++ +|||||++++. +. ..|.+..
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 445688776 89999999887 53 3455544
No 307
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=38.16 E-value=12 Score=28.51 Aligned_cols=11 Identities=18% Similarity=-0.049 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 26 ~GKSsli~~l~ 36 (179)
T 1z0f_A 26 VGKSCLLHQFT 36 (179)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 308
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=38.14 E-value=13 Score=29.70 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=13.1
Q ss_pred eccceee------chhhHHHHhhh
Q psy17516 70 KVGAMVK------APLRTLLFISM 87 (264)
Q Consensus 70 ~~Ge~~~------sGKSTLl~~l~ 87 (264)
++|-++. |||||+.+.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 4555554 99999998764
No 309
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=38.06 E-value=12 Score=32.16 Aligned_cols=12 Identities=8% Similarity=-0.086 Sum_probs=10.1
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 35 ~GKSTlln~l~g 46 (315)
T 1jwy_B 35 SGKSSVLENIVG 46 (315)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHHC
Confidence 999999987744
No 310
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=38.05 E-value=12 Score=28.68 Aligned_cols=11 Identities=18% Similarity=0.057 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 20 ~GKssl~~~l~ 30 (181)
T 3tw8_B 20 VGKSSLLLRFA 30 (181)
T ss_dssp SCHHHHHHHHC
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=37.98 E-value=13 Score=29.72 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=13.0
Q ss_pred eccceee------chhhHHHHhhh
Q psy17516 70 KVGAMVK------APLRTLLFISM 87 (264)
Q Consensus 70 ~~Ge~~~------sGKSTLl~~l~ 87 (264)
.+|-++. |||||+.+.+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHH
Confidence 3455554 99999998764
No 312
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=37.96 E-value=12 Score=29.64 Aligned_cols=12 Identities=17% Similarity=-0.144 Sum_probs=10.0
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+.+.+..
T Consensus 11 sGKsT~~~~L~~ 22 (205)
T 2jaq_A 11 AGKSTISAEISK 22 (205)
T ss_dssp SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999987743
No 313
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=37.62 E-value=12 Score=28.23 Aligned_cols=11 Identities=9% Similarity=0.011 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 17 ~GKssli~~l~ 27 (170)
T 1z08_A 17 VGKTSLVLRYC 27 (170)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999997653
No 314
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=37.52 E-value=68 Score=22.68 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=26.1
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
-.+|+++|+|=...+.| ...+.+.+++......+|++|....
T Consensus 49 ~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ii~~t~~~~ 90 (130)
T 3eod_A 49 GFTPDLMICDIAMPRMN---GLKLLEHIRNRGDQTPVLVISATEN 90 (130)
T ss_dssp TCCCSEEEECCC--------CHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred cCCCCEEEEecCCCCCC---HHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 36789999997554433 3466667776555667888776543
No 315
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=37.50 E-value=12 Score=30.01 Aligned_cols=11 Identities=18% Similarity=-0.010 Sum_probs=9.5
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 40 ~GKSslin~l~ 50 (223)
T 4dhe_A 40 AGKSTAINVLC 50 (223)
T ss_dssp HHHHHHHHHHT
T ss_pred CCHHHHHHHHh
Confidence 99999998764
No 316
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=37.39 E-value=12 Score=28.42 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 15 vGKSsl~~~l~ 25 (175)
T 2nzj_A 15 VGKTSLASLFA 25 (175)
T ss_dssp SSHHHHHHHHH
T ss_pred ccHHHHHHHHh
Confidence 89999998653
No 317
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=37.31 E-value=74 Score=22.87 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=29.6
Q ss_pred CCCCEEEeecCCCCCC-HHHHHHHHHHHHH--hhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALD-LSHTQNIGQMLKR--HFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD-~~~~~~i~~ll~~--~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|=- +. ..+...+++.|++ ...+..+|++|....
T Consensus 49 ~~~dlvi~D~~---l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~ 92 (140)
T 3lua_A 49 DSITLIIMDIA---FPVEKEGLEVLSAIRNNSRTANTPVIIATKSDN 92 (140)
T ss_dssp CCCSEEEECSC---SSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCC
T ss_pred CCCcEEEEeCC---CCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCC
Confidence 57899999854 34 5666788888887 555777888886543
No 318
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=37.25 E-value=1.1e+02 Score=22.03 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=29.0
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+++.+++......+|++|-...
T Consensus 48 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~~~ 88 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSG---MDILREIKKITPHMAVIILTGHGD 88 (143)
T ss_dssp TTCCEEEEESCCSSSCH---HHHHHHHHHHCTTCEEEEEECTTC
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCeEEEEECCCC
Confidence 57899999977665554 366677776655677887776543
No 319
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=37.24 E-value=95 Score=22.70 Aligned_cols=41 Identities=7% Similarity=0.178 Sum_probs=28.9
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+++.+++......+|++|....
T Consensus 50 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~~~ 90 (153)
T 3cz5_A 50 TTPDIVVMDLTLPGPGG---IEATRHIRQWDGAARILIFTMHQG 90 (153)
T ss_dssp TCCSEEEECSCCSSSCH---HHHHHHHHHHCTTCCEEEEESCCS
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHHhCCCCeEEEEECCCC
Confidence 57899999987666554 366777776655667888886543
No 320
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=37.00 E-value=12 Score=28.27 Aligned_cols=11 Identities=18% Similarity=-0.318 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 13 ~GKSsli~~l~ 23 (169)
T 3q85_A 13 VGKSTLAGTFG 23 (169)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999998663
No 321
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=36.84 E-value=13 Score=28.69 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 15 ~GKSsli~~l~ 25 (189)
T 4dsu_A 15 VGKSALTIQLI 25 (189)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 322
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=36.83 E-value=13 Score=29.19 Aligned_cols=11 Identities=18% Similarity=-0.151 Sum_probs=9.5
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 16 sGKST~~~~L~ 26 (193)
T 2rhm_A 16 TGKTTLSQALA 26 (193)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998764
No 323
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=36.80 E-value=12 Score=28.49 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 18 ~GKSsli~~l~ 28 (177)
T 1wms_A 18 VGKSSLMNRYV 28 (177)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 324
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=36.69 E-value=19 Score=28.58 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEe
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSL 233 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH 233 (264)
..-.++++||...-+|......+..++..+.++.++|..|-
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SA 185 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 45689999999987776666666666666655778887663
No 325
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=36.67 E-value=15 Score=32.90 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=15.8
Q ss_pred eeeeccceee------chhhHHHHhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFIS 86 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l 86 (264)
--+++|+++. +|||||+..+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~l 81 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHA 81 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHH
Confidence 3578999875 9999998654
No 326
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=36.62 E-value=52 Score=26.90 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=10.0
Q ss_pred cCCCCEEEeecCCCC
Q psy17516 192 FKPAPLYILDEVDAA 206 (264)
Q Consensus 192 ~~~~~illlDEPta~ 206 (264)
...|.++++||.+.-
T Consensus 96 ~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAV 110 (262)
T ss_dssp HTCSEEEEEECC---
T ss_pred hcCCeEEEEeCcchh
Confidence 356789999999874
No 327
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=36.44 E-value=79 Score=22.08 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=28.2
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++++|--..+.|. ..+.+.+++......+|++|....
T Consensus 46 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 86 (124)
T 1srr_A 46 ERPDLVLLDMKIPGMDG---IEILKRMKVIDENIRVIIMTAYGE 86 (124)
T ss_dssp HCCSEEEEESCCTTCCH---HHHHHHHHHHCTTCEEEEEESSCC
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHHhCCCCCEEEEEccCc
Confidence 46899999986666554 356666766555677888886543
No 328
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=36.33 E-value=13 Score=27.88 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 17 ~GKssli~~l~ 27 (170)
T 1r2q_A 17 VGKSSLVLRFV 27 (170)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997653
No 329
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=36.30 E-value=13 Score=28.33 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 19 ~GKSsli~~l~ 29 (182)
T 1ky3_A 19 VGKTSLMHRYV 29 (182)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997653
No 330
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=36.29 E-value=13 Score=27.72 Aligned_cols=11 Identities=9% Similarity=-0.031 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 12 ~GKSsli~~l~ 22 (161)
T 2dyk_A 12 VGKSSLFNRLL 22 (161)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 89999998664
No 331
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=36.22 E-value=78 Score=22.22 Aligned_cols=40 Identities=20% Similarity=0.046 Sum_probs=27.7
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHh--hcCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRH--FKTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~--~~~~q~IiVTH~~ 235 (264)
.+|+++|+|--..+.|. ..+++.+++. .....+|++|-..
T Consensus 46 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 46 RGYDAVFIDLNLPDTSG---LALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp SCCSEEEEESBCSSSBH---HHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhhhccCCCCEEEEECCc
Confidence 57899999976665554 4677777776 3456777777643
No 332
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=36.21 E-value=14 Score=29.87 Aligned_cols=12 Identities=8% Similarity=-0.119 Sum_probs=10.3
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+.+++..
T Consensus 15 SGKST~~~~L~~ 26 (218)
T 1vht_A 15 SGKSTVANAFAD 26 (218)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999988754
No 333
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=36.20 E-value=73 Score=23.44 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=29.3
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|=-..+.|. ..+++.|++......+|++|-...
T Consensus 57 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 57 REVDLVISAAHLPQMDG---PTLLARIHQQYPSTTRILLTGDPD 97 (153)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHHCTTSEEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcH---HHHHHHHHhHCCCCeEEEEECCCC
Confidence 57899999987666554 366677777555677888886543
No 334
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=36.11 E-value=13 Score=28.25 Aligned_cols=10 Identities=0% Similarity=-0.154 Sum_probs=9.1
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
|||||+.+.+
T Consensus 12 sGKsT~a~~L 21 (179)
T 3lw7_A 12 SGKSEFAKLL 21 (179)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999876
No 335
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=35.87 E-value=73 Score=23.37 Aligned_cols=41 Identities=10% Similarity=0.164 Sum_probs=29.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+++.|++......+|++|-...
T Consensus 60 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 100 (152)
T 3eul_A 60 HLPDVALLDYRMPGMDG---AQVAAAVRSYELPTRVLLISAHDE 100 (152)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHHTTCSCEEEEEESCCC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCeEEEEEccCC
Confidence 47899999977666654 366667776655677888886543
No 336
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=35.85 E-value=14 Score=28.56 Aligned_cols=19 Identities=5% Similarity=-0.162 Sum_probs=12.2
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy17516 203 VDAALDLSHTQNIGQMLKR 221 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~ 221 (264)
++|+.+..+...+.+.|.+
T Consensus 162 ~~Sa~~~~~v~~l~~~l~~ 180 (190)
T 2cxx_A 162 PISAKFGDNIERLKNRIFE 180 (190)
T ss_dssp ECCTTTCTTHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHH
Confidence 4677777776666665543
No 337
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=35.82 E-value=14 Score=28.56 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 22 ~GKSsli~~l~ 32 (195)
T 3bc1_A 22 VGKTSVLYQYT 32 (195)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 338
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=35.73 E-value=19 Score=30.16 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcC--CeEEEEEeCcchHhhccceeEEE
Q psy17516 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT--SQFIIVSLKEGMFSNANVIFRTK 248 (264)
Q Consensus 171 ~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~--~q~IiVTH~~~~~~~ad~l~~v~ 248 (264)
..|-=-+ .|.|+..||+. .+.+-++++.|+- .++...+..+.++|+.+.-. ...+||+.+..++..+..+-+|.
T Consensus 93 ~klnkK~-rrlAl~sALs~-k~~~~~lvVvd~~--~~~~~KTK~~~~~L~~l~~~~~~~~LiV~~~~~~~~a~RNip~v~ 168 (205)
T 2zjr_C 93 YTLPRQV-RQLGLAMAIAS-RQEGGKLVAVDGF--DIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVS 168 (205)
T ss_dssp CCCCHHH-HHHHHHHHHHH-HHHTTCCBCSCCT--TSCSSCSHHHHHHHHHTTCCSSSCEEEECCCHHHHTSCCCSSSEE
T ss_pred hhcCHHH-HHHHHHHHHHH-HhhcCCEEEEecc--ccCCCCHHHHHHHHHHcCCCcCCCEEEEEcCccHHHHHhCCCCce
Confidence 4444444 45677777764 3445589999986 46667778888999887532 34455545556666666665544
No 339
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=35.68 E-value=14 Score=28.20 Aligned_cols=11 Identities=27% Similarity=-0.088 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 19 ~GKssl~~~l~ 29 (178)
T 2lkc_A 19 HGKTTLLDAIR 29 (178)
T ss_dssp TTHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 340
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=35.60 E-value=77 Score=22.65 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=28.3
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|=--.+.|. ..+.+.|++......+|++|....
T Consensus 48 ~~~dlvilD~~lp~~~g---~~~~~~l~~~~~~~~ii~ls~~~~ 88 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMTG---LEVLAEIRKKHLNIKVIIVTTFKR 88 (133)
T ss_dssp HCCSEEEECSSCSSSCH---HHHHHHHHHTTCSCEEEEEESCCC
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHHHCCCCcEEEEecCCC
Confidence 46899999976555554 366667776545677888887644
No 341
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=35.57 E-value=15 Score=30.35 Aligned_cols=20 Identities=10% Similarity=-0.086 Sum_probs=14.2
Q ss_pred eeccceee------chhhHHHHhhhh
Q psy17516 69 VKVGAMVK------APLRTLLFISME 88 (264)
Q Consensus 69 v~~Ge~~~------sGKSTLl~~l~~ 88 (264)
-.+|.+++ |||||+.++++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34566554 999999988753
No 342
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=35.42 E-value=59 Score=22.57 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=28.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++++|--..+.|. ..+.+.+++...+..+|++|....
T Consensus 46 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp HCCSEEEEECSCGGGCH---HHHHHHHHHHCTTCCEEEEECTTC
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHhhCCCCeEEEEeCCCC
Confidence 46899999976554443 466677776555667888887544
No 343
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=35.34 E-value=14 Score=31.29 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=17.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhh
Q psy17516 203 VDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~ 223 (264)
|+++++..+...+.+.+.+..
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 789999888888888877654
No 344
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=35.34 E-value=14 Score=28.05 Aligned_cols=11 Identities=18% Similarity=0.045 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 25 ~GKssli~~l~ 35 (179)
T 2y8e_A 25 VGKTSLITRFM 35 (179)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998653
No 345
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=35.30 E-value=14 Score=28.25 Aligned_cols=10 Identities=20% Similarity=-0.044 Sum_probs=8.9
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 21 ~GKssli~~l 30 (180)
T 2g6b_A 21 VGKTCLLVRF 30 (180)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8999999765
No 346
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=35.26 E-value=16 Score=28.26 Aligned_cols=11 Identities=18% Similarity=0.075 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||++..+.
T Consensus 34 sGKStil~Ai~ 44 (149)
T 1f2t_A 34 SGKSSLLDAIL 44 (149)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998764
No 347
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=35.19 E-value=14 Score=28.43 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 29 ~GKssli~~l~ 39 (183)
T 1moz_A 29 AGKTTILYRLQ 39 (183)
T ss_dssp SSHHHHHHHTC
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 348
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=35.15 E-value=15 Score=28.71 Aligned_cols=21 Identities=14% Similarity=-0.165 Sum_probs=15.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhh
Q psy17516 203 VDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~ 223 (264)
++++.+..+...+.+.|.+..
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 149 ETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp ECBTTTTBSHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHH
Confidence 478888888888777776543
No 349
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=35.02 E-value=14 Score=27.96 Aligned_cols=10 Identities=30% Similarity=0.281 Sum_probs=8.9
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 18 ~GKssl~~~l 27 (171)
T 1upt_A 18 AGKTTILYRL 27 (171)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999866
No 350
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=34.84 E-value=14 Score=28.68 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 32 ~GKSsli~~l~ 42 (190)
T 3con_A 32 VGKSALTIQLI 42 (190)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=34.82 E-value=16 Score=28.49 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=10.0
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+.+.+..
T Consensus 14 sGKsT~~~~L~~ 25 (192)
T 1kht_A 14 VGSTTSSQLAMD 25 (192)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999987743
No 352
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=34.82 E-value=43 Score=26.75 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=32.0
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcc-----------hHhhccceeEEE
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEG-----------MFSNANVIFRTK 248 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~-----------~~~~ad~l~~v~ 248 (264)
+++++++||.-- +++. +.+.|+.+.+ +..+|+..++.. +++.||.++.++
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 568999999754 6543 3344444333 556667677433 677899887753
No 353
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=34.63 E-value=59 Score=25.42 Aligned_cols=64 Identities=11% Similarity=-0.021 Sum_probs=44.0
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhhc--CCeEEEEEeC----cchHhhccceeEE-EeeCCeEEEEEeecc
Q psy17516 198 YILDEVDAALDLSHTQNIGQMLKRHFK--TSQFIIVSLK----EGMFSNANVIFRT-KFVDGNSNVTRTVNR 262 (264)
Q Consensus 198 lllDEPta~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~----~~~~~~ad~l~~v-~~~~g~s~i~~~~~~ 262 (264)
.+.|+ ..-|++.....+-+.|.++.+ +.|+.|||-+ ....++|++++.- .=.||+.-++....|
T Consensus 16 ~V~D~-A~vLs~~~~~~L~~~l~~l~~~tg~qi~VvtV~sl~g~~ie~yA~~l~~~wgG~ngvLLlVa~~dR 86 (148)
T 2kpt_A 16 NVTDY-TGQISSSDITNIQAAIDDVKASEQKVIFVVFLSSFDGVDPETWTQQALQANGGGNVLIYALAPEER 86 (148)
T ss_dssp SEEES-SSCSCHHHHHHHHHHHHHHHHHSCCEEEEEECSCCTTTCHHHHHHHHHHHHTCSSEEEEEEEGGGT
T ss_pred eeeeC-CCCCCHHHHHHHHHHHHHHHHhhCCEEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEEeCCC
Confidence 57786 667999999999999998764 6788888764 2345678877621 013677666655444
No 354
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=34.60 E-value=14 Score=28.84 Aligned_cols=11 Identities=18% Similarity=-0.115 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 36 ~GKSsLi~~l~ 46 (193)
T 2oil_A 36 VGKTNLLSRFT 46 (193)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998653
No 355
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=34.55 E-value=15 Score=27.98 Aligned_cols=11 Identities=9% Similarity=-0.161 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 17 ~GKssl~~~l~ 27 (178)
T 2hxs_A 17 SGKTSLTTCFA 27 (178)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999998664
No 356
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=34.35 E-value=15 Score=28.54 Aligned_cols=12 Identities=8% Similarity=-0.141 Sum_probs=10.2
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+.+.+..
T Consensus 14 sGKST~a~~La~ 25 (178)
T 1qhx_A 14 AGKSGIVRCLQS 25 (178)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999987753
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=34.33 E-value=16 Score=28.96 Aligned_cols=11 Identities=0% Similarity=-0.209 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 15 sGKsT~~~~L~ 25 (213)
T 2plr_A 15 SGKSSQATLLK 25 (213)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998764
No 358
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=34.10 E-value=15 Score=28.24 Aligned_cols=11 Identities=18% Similarity=0.036 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 29 ~GKSsli~~l~ 39 (187)
T 2a9k_A 29 VGKSALTLQFM 39 (187)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999997663
No 359
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=33.94 E-value=15 Score=28.42 Aligned_cols=11 Identities=18% Similarity=-0.191 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 25 ~GKssL~~~l~ 35 (198)
T 3t1o_A 25 SGKTTNLKWIY 35 (198)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997653
No 360
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=33.90 E-value=16 Score=28.25 Aligned_cols=10 Identities=20% Similarity=-0.018 Sum_probs=8.8
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 21 ~GKSsli~~l 30 (186)
T 2bme_A 21 TGKSCLLHQF 30 (186)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8999999765
No 361
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=33.74 E-value=16 Score=31.06 Aligned_cols=12 Identities=17% Similarity=-0.078 Sum_probs=10.0
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 37 ~GKSSLln~l~g 48 (299)
T 2aka_B 37 AGKSSVLENFVG 48 (299)
T ss_dssp SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHC
Confidence 999999987643
No 362
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=33.58 E-value=15 Score=28.13 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 23 ~GKSsli~~l~ 33 (181)
T 2efe_B 23 AGKSSLVLRFV 33 (181)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999997653
No 363
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=33.47 E-value=16 Score=28.89 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=13.4
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy17516 203 VDAALDLSHTQNIGQMLKR 221 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~ 221 (264)
++++.+..+...+.+.|.+
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~ 183 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQ 183 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHH
Confidence 4777888777777766544
No 364
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=33.40 E-value=15 Score=29.57 Aligned_cols=11 Identities=27% Similarity=0.069 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
||||||++.+.
T Consensus 17 sGKTTl~~~l~ 27 (174)
T 1np6_A 17 TGKTTLLKKLI 27 (174)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997664
No 365
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=33.04 E-value=90 Score=22.42 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=26.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+++.+++......+|++|....
T Consensus 54 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 94 (143)
T 2qv0_A 54 NKVDAIFLDINIPSLDG---VLLAQNISQFAHKPFIVFITAWKE 94 (143)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHTTSTTCCEEEEEESCCT
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHccCCCceEEEEeCCHH
Confidence 57899999976555543 355666665443455777776543
No 366
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=33.01 E-value=17 Score=28.17 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 32 ~GKSsli~~l~ 42 (181)
T 2h17_A 32 AGKTTILYQFS 42 (181)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998664
No 367
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=32.93 E-value=93 Score=22.06 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
.+|+++++|-...+.|. ..+++.|++......+|++|...
T Consensus 46 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 85 (136)
T 1mvo_A 46 EKPDLIVLDVMLPKLDG---IEVCKQLRQQKLMFPILMLTAKD 85 (136)
T ss_dssp HCCSEEEEESSCSSSCH---HHHHHHHHHTTCCCCEEEEECTT
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHcCCCCCCEEEEECCC
Confidence 46899999977666654 35666777654456677777653
No 368
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=32.82 E-value=17 Score=30.93 Aligned_cols=12 Identities=17% Similarity=-0.014 Sum_probs=9.9
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 12 ~GKSTL~n~L~g 23 (256)
T 3iby_A 12 CGKTTLFNALTN 23 (256)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHHC
Confidence 999999987643
No 369
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=32.80 E-value=17 Score=27.99 Aligned_cols=11 Identities=9% Similarity=-0.049 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 17 ~GKSsli~~l~ 27 (181)
T 3t5g_A 17 VGKSSLTIQFV 27 (181)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997653
No 370
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=32.74 E-value=16 Score=28.18 Aligned_cols=11 Identities=9% Similarity=-0.076 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 29 ~GKSsl~~~l~ 39 (183)
T 3kkq_A 29 VGKSALTIQFF 39 (183)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998653
No 371
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=32.71 E-value=15 Score=33.17 Aligned_cols=12 Identities=8% Similarity=-0.100 Sum_probs=10.4
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 190 aGKSTLln~L~~ 201 (364)
T 2qtf_A 190 SGKTSLFNSLTG 201 (364)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHC
Confidence 999999998754
No 372
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=32.59 E-value=96 Score=22.74 Aligned_cols=41 Identities=15% Similarity=-0.019 Sum_probs=28.5
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|-...+.|. ..+++.+++......+|++|....
T Consensus 46 ~~~dliild~~l~~~~g---~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDG---LALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp TCCSEEEEESCCSSSCH---HHHHHHHHHHCTTSCEEEEECGGG
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCCCCEEEEECCCC
Confidence 56899999987665554 366677776655667888876543
No 373
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=32.43 E-value=18 Score=28.38 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=8.8
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 34 ~GKSsli~~l 43 (191)
T 3dz8_A 34 VGKTSFLFRY 43 (191)
T ss_dssp SSHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999999765
No 374
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.25 E-value=45 Score=28.98 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=31.0
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 194 PAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 194 ~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
+++++++||++. |.......+..++.+...++.||++|...
T Consensus 110 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 110 GFKLIILDEADA-MTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp SCEEEEETTGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 468999999875 66666777888887766667788888654
No 375
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=32.18 E-value=16 Score=28.40 Aligned_cols=11 Identities=18% Similarity=-0.004 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 27 ~GKSsli~~l~ 37 (196)
T 3tkl_A 27 VGKSCLLLRFA 37 (196)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 376
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=32.15 E-value=16 Score=28.66 Aligned_cols=10 Identities=10% Similarity=-0.104 Sum_probs=8.8
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 25 ~GKSsli~~l 34 (206)
T 2bov_A 25 VGKSALTLQF 34 (206)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999765
No 377
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.13 E-value=59 Score=30.38 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=29.5
Q ss_pred HhhcCCCCEEEeecCCCCCC----------HHHHHHHHHHHHHhh---c-CC-eEEEEEeCcchHh
Q psy17516 189 MLLFKPAPLYILDEVDAALD----------LSHTQNIGQMLKRHF---K-TS-QFIIVSLKEGMFS 239 (264)
Q Consensus 189 ~~l~~~~~illlDEPta~LD----------~~~~~~i~~ll~~~~---~-~~-q~IiVTH~~~~~~ 239 (264)
.|....|.++++||.++-.- ......+..+|..+- . +. -+|..|.++..+.
T Consensus 270 ~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 270 VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 33446678999999997542 223344555655442 2 22 3456787776543
No 378
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.01 E-value=44 Score=18.20 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHHHHHHHHhh
Q psy17516 2 NPHEVTRKYQKLKEQRDKLE 21 (264)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~l~ 21 (264)
|.+|+-+++++|++++..+.
T Consensus 2 nadelykeledlqerlrklr 21 (27)
T 3twe_A 2 NADELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888887764
No 379
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=31.90 E-value=17 Score=28.29 Aligned_cols=11 Identities=36% Similarity=0.033 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 27 vGKSsL~~~l~ 37 (181)
T 1fzq_A 27 AGKTTLLKQLA 37 (181)
T ss_dssp SSHHHHHHHHC
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 380
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.89 E-value=90 Score=22.32 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHH--hhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKR--HFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~--~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+++.|++ .....-+|++|-...
T Consensus 49 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 49 RPYAAMTVDLNLPDQDG---VSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhCcccCCCCEEEEecCCC
Confidence 67899999987666654 466777776 334677888886543
No 381
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=31.87 E-value=17 Score=27.98 Aligned_cols=12 Identities=8% Similarity=-0.230 Sum_probs=10.1
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+.+.+..
T Consensus 13 sGKST~a~~L~~ 24 (181)
T 1ly1_A 13 SGKSTWAREFIA 24 (181)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 999999987754
No 382
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=31.73 E-value=18 Score=31.57 Aligned_cols=11 Identities=27% Similarity=0.048 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 21 vGKSTLin~l~ 31 (308)
T 3iev_A 21 VGKSTLLNNLL 31 (308)
T ss_dssp SSHHHHHHHHH
T ss_pred CcHHHHHHHHh
Confidence 99999998663
No 383
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=31.72 E-value=17 Score=28.58 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=13.3
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy17516 203 VDAALDLSHTQNIGQMLKR 221 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~ 221 (264)
++++.+..+...+.+.|.+
T Consensus 153 ~~Sa~~g~gi~~l~~~l~~ 171 (207)
T 1vg8_A 153 ETSAKEAINVEQAFQTIAR 171 (207)
T ss_dssp ECBTTTTBSHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHH
Confidence 5777877777777776544
No 384
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=31.42 E-value=17 Score=27.24 Aligned_cols=10 Identities=30% Similarity=0.291 Sum_probs=8.8
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 11 ~GKssl~~~l 20 (164)
T 1r8s_A 11 AGKTTILYKL 20 (164)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8999999765
No 385
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=31.42 E-value=18 Score=28.23 Aligned_cols=11 Identities=18% Similarity=0.174 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 33 ~GKSsli~~l~ 43 (189)
T 2gf9_A 33 VGKTSFLFRYA 43 (189)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 386
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=31.35 E-value=18 Score=28.08 Aligned_cols=11 Identities=18% Similarity=-0.067 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 12 sGKsT~~~~L~ 22 (194)
T 1nks_A 12 VGKSTVLAKVK 22 (194)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998763
No 387
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=31.29 E-value=1.3e+02 Score=20.68 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=27.6
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++++|=-..+.|. ..+.+.+++......+|++|....
T Consensus 43 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 83 (121)
T 2pl1_A 43 HIPDIAIVDLGLPDEDG---LSLIRRWRSNDVSLPILVLTARES 83 (121)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHHTTCCSCEEEEESCCC
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCEEEEecCCC
Confidence 57899999976555554 356666666545667888876544
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=31.24 E-value=19 Score=28.28 Aligned_cols=11 Identities=0% Similarity=-0.061 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 34 ~GKSsli~~l~ 44 (192)
T 2fg5_A 34 VGKSSIVCRFV 44 (192)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999997653
No 389
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=31.19 E-value=1.2e+02 Score=21.48 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=27.8
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHH--hhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKR--HFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~--~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+.+.|++ ......+|++|....
T Consensus 53 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 53 VKPDVVMLDLMMVGMDG---FSICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp TCCSEEEEETTCTTSCH---HHHHHHHHTSTTTTTSEEEEEESSCC
T ss_pred cCCCEEEEecccCCCcH---HHHHHHHHhCccccCCcEEEEeCCCC
Confidence 57899999976655554 366667776 334567788886544
No 390
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=31.02 E-value=55 Score=28.89 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=11.4
Q ss_pred hcCCCCEEEeecCCC
Q psy17516 191 LFKPAPLYILDEVDA 205 (264)
Q Consensus 191 l~~~~~illlDEPta 205 (264)
....|.++++||.++
T Consensus 173 ~~~~~~vl~iDEid~ 187 (357)
T 3d8b_A 173 RCQQPAVIFIDEIDS 187 (357)
T ss_dssp HHTCSEEEEEETHHH
T ss_pred HhcCCeEEEEeCchh
Confidence 345678999999953
No 391
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=30.94 E-value=18 Score=28.46 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=8.8
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 19 ~GKSsli~~l 28 (203)
T 1zbd_A 19 VGKTSFLFRY 28 (203)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8999999765
No 392
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=30.82 E-value=19 Score=28.05 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 27 ~GKssl~~~l~ 37 (187)
T 1zj6_A 27 AGKTTILYQFS 37 (187)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 393
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=30.66 E-value=18 Score=31.61 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=15.3
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy17516 203 VDAALDLSHTQNIGQMLKRH 222 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~ 222 (264)
|+||+...+...+.+.|.+.
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLAL 170 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHh
Confidence 67888888888888777654
No 394
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=30.64 E-value=18 Score=28.17 Aligned_cols=11 Identities=9% Similarity=-0.100 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 32 ~GKSsli~~l~ 42 (190)
T 2h57_A 32 SGKTTIINKLK 42 (190)
T ss_dssp SSHHHHHHHTS
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 395
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=30.63 E-value=1.1e+02 Score=21.72 Aligned_cols=40 Identities=10% Similarity=0.038 Sum_probs=28.0
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHH----hhcCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKR----HFKTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~----~~~~~q~IiVTH~~ 235 (264)
.+|+++|+|=-..+.|.. .+++.|++ ......+|++|-..
T Consensus 59 ~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGW---ELIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp CCCSEEEEESSCSSSCHH---HHHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred CCCCEEEEcCCCCCCCHH---HHHHHHHHhhhhccCCCeEEEEeCCC
Confidence 578999999776666543 67777777 33466677777554
No 396
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=30.60 E-value=52 Score=27.77 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=23.3
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHh
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRH 222 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~ 222 (264)
.+..++++||++. |++.....+++++.+.
T Consensus 118 ~~~~vl~lDEi~~-l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 118 RPYSVILFDAIEK-AHPDVFNILLQMLDDG 146 (311)
T ss_dssp CSSEEEEEETGGG-SCHHHHHHHHHHHHHS
T ss_pred CCCeEEEEeChhh-cCHHHHHHHHHHHhcC
Confidence 4557999999975 7888888888888763
No 397
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=30.46 E-value=1e+02 Score=28.55 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHhhcc
Q psy17516 4 HEVTRKYQKLKEQRDKLERTVDKKAQLSL-RNEENQFK 40 (264)
Q Consensus 4 ~~~~~~~~~l~~~~~~l~~~vn~~a~~~~-~~~~~~y~ 40 (264)
+.+..-+++++..+-.. .||..+..++ +++..+..
T Consensus 22 ~~~~~~l~el~~~Ll~a--Dv~~~~~~~~~~~v~~~~~ 57 (433)
T 3kl4_A 22 KAVDEFIKDLQKSLISS--DVNVKLVFSLTAKIKERLN 57 (433)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHh
Confidence 34455566666666554 5777765553 44444443
No 398
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.33 E-value=97 Score=22.01 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=26.9
Q ss_pred CCCCEEEeecCCC-----CCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDA-----ALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta-----~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--.. +.|. ..+++.|++......+|++|....
T Consensus 46 ~~~dlvi~d~~~~~~~~~~~~g---~~~~~~l~~~~~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 46 ENPEVVLLDMNFTSGINNGNEG---LFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp SCEEEEEEETTTTC-----CCH---HHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred CCCCEEEEeCCcCCCCCCCccH---HHHHHHHHhhCcCCCEEEEECCCC
Confidence 5789999997654 4443 366666766555667887776543
No 399
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=30.28 E-value=18 Score=28.37 Aligned_cols=11 Identities=9% Similarity=-0.049 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 11 sGKsT~~~~L~ 21 (197)
T 2z0h_A 11 SGKSTQIQLLA 21 (197)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998763
No 400
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=30.25 E-value=18 Score=30.31 Aligned_cols=12 Identities=8% Similarity=-0.310 Sum_probs=10.0
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 32 ~GKSSlin~l~~ 43 (247)
T 3lxw_A 32 AGKSATGNSILG 43 (247)
T ss_dssp SSHHHHHHHHHT
T ss_pred CcHHHHHHHHhC
Confidence 999999987643
No 401
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=30.21 E-value=19 Score=28.55 Aligned_cols=10 Identities=20% Similarity=-0.018 Sum_probs=8.9
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 36 ~GKSsLi~~l 45 (200)
T 2o52_A 36 TGKSCLLHQF 45 (200)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999865
No 402
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=30.17 E-value=19 Score=27.83 Aligned_cols=11 Identities=27% Similarity=-0.076 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 29 ~GKssl~~~l~ 39 (186)
T 1ksh_A 29 AGKTTILKKFN 39 (186)
T ss_dssp SSHHHHHHHHT
T ss_pred CCHHHHHHHHh
Confidence 89999998663
No 403
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=30.10 E-value=19 Score=30.61 Aligned_cols=10 Identities=20% Similarity=-0.090 Sum_probs=9.0
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 19 ~GKSTLin~L 28 (274)
T 3t5d_A 19 LGKSTLINSL 28 (274)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999875
No 404
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=30.09 E-value=19 Score=28.12 Aligned_cols=10 Identities=10% Similarity=-0.054 Sum_probs=8.8
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 31 ~GKSsli~~l 40 (189)
T 1z06_A 31 VGKTCLTYRF 40 (189)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999765
No 405
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=30.05 E-value=18 Score=33.20 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=19.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhh
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~ 223 (264)
...|++ ++||+...+...+++.+.+..
T Consensus 327 ~~~~~~----~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 327 DYSPLI----FTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp TTSCEE----ECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCcEE----EEECCCCCCHHHHHHHHHHHH
Confidence 344555 389999988888888776543
No 406
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=30.00 E-value=19 Score=28.10 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 33 ~GKSsli~~l~ 43 (188)
T 1zd9_A 33 SGKTTFVNVIA 43 (188)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997663
No 407
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=29.99 E-value=19 Score=28.16 Aligned_cols=11 Identities=9% Similarity=-0.324 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 11 sGKsT~~~~L~ 21 (195)
T 2pbr_A 11 SGKTTQAKKLY 21 (195)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998763
No 408
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=29.93 E-value=21 Score=27.77 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 18 vGKSsli~~l~ 28 (184)
T 1m7b_A 18 CGKTALLHVFA 28 (184)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998653
No 409
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=29.91 E-value=49 Score=26.70 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=30.6
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhc-CCeEEEEEeCcchHhhcccee
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIVSLKEGMFSNANVIF 245 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~-~~q~IiVTH~~~~~~~ad~l~ 245 (264)
...++-+.++.. ......+.+.++++.. ..++++|.|++.+-+.+..+.
T Consensus 83 ~~~~~~~~~~ly----~~~~~~~l~~i~~~~~~~~~vllvGHnP~l~~l~~~L~ 132 (186)
T 4hbz_A 83 ISAQVRYRDELY----GGGVDEILAEVAAVPADASTVLVVGHAPTIPATGWELV 132 (186)
T ss_dssp CCSEEEEEGGGT----TCCHHHHHHHHHTSCTTCSEEEEEECTTHHHHHHHHHH
T ss_pred cccccccccccc----ccChHHHHHHHHhccCCCCeeeecccCCCHHHHHHHHh
Confidence 344555544432 2334567777877654 467889999998866665543
No 410
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=29.90 E-value=16 Score=28.50 Aligned_cols=11 Identities=18% Similarity=-0.315 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 22 sGKst~~~~l~ 32 (180)
T 3iij_A 22 VGKTTLGKELA 32 (180)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998774
No 411
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=29.82 E-value=1.9e+02 Score=25.82 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEeecCCCCCC-H---------------HHHHHHHHHHHHhhc--CCeEEEEEeC
Q psy17516 180 LVALSLVLAMLLFKPAPLYILDEVDAALD-L---------------SHTQNIGQMLKRHFK--TSQFIIVSLK 234 (264)
Q Consensus 180 rvaiA~~la~~l~~~~~illlDEPta~LD-~---------------~~~~~i~~ll~~~~~--~~q~IiVTH~ 234 (264)
.+.+++.+.. -..|+++++|..++-.. . .....++..|..+++ +.++|+|.|=
T Consensus 127 ~l~~~~~l~~--~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 127 ALEIVDELVR--SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHHHHHHH--TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHHHHHHHhh--hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 3444444322 35689999999877654 1 112233444555543 5667777764
No 412
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=29.81 E-value=20 Score=30.63 Aligned_cols=11 Identities=18% Similarity=-0.058 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 14 ~GKSTLin~l~ 24 (274)
T 3i8s_A 14 SGKTTLFNQLT 24 (274)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998763
No 413
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.80 E-value=74 Score=31.25 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHH
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKR 221 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~ 221 (264)
.|+.++++||... +++.....+.+++.+
T Consensus 578 ~~~~vl~lDEi~~-~~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 578 KPYSVVLLDAIEK-AHPDVFNILLQVLED 605 (758)
T ss_dssp CSSSEEEEECGGG-SCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHhcc
Confidence 5778999999975 678878888888876
No 414
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=29.78 E-value=19 Score=27.58 Aligned_cols=10 Identities=20% Similarity=0.036 Sum_probs=8.7
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 16 ~GKssl~~~l 25 (186)
T 1mh1_A 16 VGKTCLLISY 25 (186)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8999999765
No 415
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=29.66 E-value=19 Score=28.11 Aligned_cols=11 Identities=18% Similarity=0.015 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 32 ~GKSsli~~l~ 42 (191)
T 2a5j_A 32 VGKSCLLLQFT 42 (191)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 89999998663
No 416
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=29.65 E-value=21 Score=28.26 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=13.2
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy17516 203 VDAALDLSHTQNIGQMLKR 221 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~ 221 (264)
++++.+..+...+.+.|.+
T Consensus 149 ~~Sa~~g~gi~~l~~~l~~ 167 (206)
T 2bcg_Y 149 ETSALDSTNVEDAFLTMAR 167 (206)
T ss_dssp ECCTTTCTTHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHH
Confidence 4677877777777776544
No 417
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=29.62 E-value=1.2e+02 Score=21.60 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=27.0
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHH--hhcCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKR--HFKTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~--~~~~~q~IiVTH~~ 235 (264)
.+|+++|+|--..+.|. ..+++.+++ ......+|++|...
T Consensus 50 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 50 GFSGVVLLDIMMPGMDG---WDTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp CCCEEEEEESCCSSSCH---HHHHHHHHHTTCCTTEEEEEEECTT
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhhcccCCCCEEEEECCC
Confidence 57899999976655554 366777776 33456677777653
No 418
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=29.60 E-value=20 Score=27.37 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 18 vGKTsli~~l~ 28 (178)
T 2iwr_A 18 SGKSSLIHRFL 28 (178)
T ss_dssp GCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997653
No 419
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=29.60 E-value=1.4e+02 Score=20.57 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=27.3
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++++|--..+.|.. .+.+.+++ .....+|++|....
T Consensus 45 ~~~dlvi~d~~l~~~~g~---~~~~~l~~-~~~~~ii~~s~~~~ 84 (122)
T 1zgz_A 45 QSVDLILLDINLPDENGL---MLTRALRE-RSTVGIILVTGRSD 84 (122)
T ss_dssp SCCSEEEEESCCSSSCHH---HHHHHHHT-TCCCEEEEEESSCC
T ss_pred CCCCEEEEeCCCCCCChH---HHHHHHHh-cCCCCEEEEECCCC
Confidence 578999999766666543 56666666 34566788876544
No 420
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=29.58 E-value=21 Score=29.55 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 13 ~GKtt~~~~l~ 23 (241)
T 2ocp_A 13 VGKSTFVKLLT 23 (241)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998763
No 421
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=29.53 E-value=19 Score=27.49 Aligned_cols=11 Identities=18% Similarity=0.015 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 19 ~GKssl~~~~~ 29 (182)
T 3bwd_D 19 VGKTCLLISYT 29 (182)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 89999997653
No 422
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=29.51 E-value=21 Score=28.45 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 36 ~GKSsli~~l~ 46 (207)
T 2fv8_A 36 CGKTCLLIVFS 46 (207)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998664
No 423
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=29.43 E-value=19 Score=28.28 Aligned_cols=11 Identities=9% Similarity=-0.155 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 37 ~GKSsLi~~l~ 47 (192)
T 2il1_A 37 VGKTSLMERFT 47 (192)
T ss_dssp SSHHHHHHHHC
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 424
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=29.37 E-value=18 Score=34.48 Aligned_cols=23 Identities=0% Similarity=-0.302 Sum_probs=16.0
Q ss_pred ccceeeeccceee------chhhHHHHhh
Q psy17516 64 MSSFSVKVGAMVK------APLRTLLFIS 86 (264)
Q Consensus 64 ~v~~~v~~Ge~~~------sGKSTLl~~l 86 (264)
.+.+++.+|.-+. |||||+++++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHH
Confidence 4666777655432 9999999754
No 425
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=29.36 E-value=18 Score=33.07 Aligned_cols=16 Identities=6% Similarity=0.246 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHh
Q psy17516 5 EVTRKYQKLKEQRDKL 20 (264)
Q Consensus 5 ~~~~~~~~l~~~~~~l 20 (264)
...++++++++++...
T Consensus 10 t~~eki~~ie~~~~~~ 25 (376)
T 4a9a_A 10 TTVEKIKAIEDEMART 25 (376)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 3567888888888765
No 426
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=29.34 E-value=21 Score=28.66 Aligned_cols=10 Identities=10% Similarity=-0.067 Sum_probs=8.7
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 41 ~GKTTl~~~l 50 (221)
T 2wsm_A 41 SGKTLLIERT 50 (221)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999755
No 427
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=29.29 E-value=19 Score=28.01 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=8.9
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 28 ~GKSsl~~~l 37 (199)
T 4bas_A 28 SGKTTIINQV 37 (199)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999865
No 428
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=29.23 E-value=1.1e+02 Score=21.67 Aligned_cols=40 Identities=8% Similarity=-0.076 Sum_probs=27.4
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
.+|+++|+|--..+.|. ..+.+.+++...+..+|++|...
T Consensus 46 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 46 EFFNLALFXIKLPDMEG---TELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp SCCSEEEECSBCSSSBH---HHHHHHHHHHCTTSEEEEEESCC
T ss_pred CCCCEEEEecCCCCCch---HHHHHHHHhhCCCCcEEEEeccc
Confidence 57899999976555554 35666676655566788887654
No 429
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=29.08 E-value=16 Score=31.05 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.++.++++||+.. |+......+..++.+...+..+|++|.+..
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp CCCEEEEEETGGG-SCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred CCceEEEEeCCCc-CCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 3568999999875 666555555555544333456667776643
No 430
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=29.07 E-value=21 Score=29.74 Aligned_cols=11 Identities=0% Similarity=-0.366 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 33 ~GKStl~n~l~ 43 (260)
T 2xtp_A 33 TGKSAAGNSIL 43 (260)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999997663
No 431
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=29.06 E-value=52 Score=27.39 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=47.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEe--CcchHhhccceeEE
Q psy17516 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSL--KEGMFSNANVIFRT 247 (264)
Q Consensus 170 ~~~LSGGekqrvaiA~~la~~l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH--~~~~~~~ad~l~~v 247 (264)
-..|-==+ .|.|+..||+. .+.+-++++.|+.. +|...+..+.++|+.+.-. .++||+. +..+...+..+-+|
T Consensus 93 ~~klnkK~-rrlAl~sALs~-k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~l~~~-~~LiV~~~~~~~~~~a~RNip~v 167 (201)
T 3r8s_E 93 SQKVNKKM-YRGALKSILSE-LVRQDRLIVVEKFS--VEAPKTKLLAQKLKDMALE-DVLIITGELDENLFLAARNLHKV 167 (201)
T ss_dssp CCCCCHHH-HHHHHHHHHHH-HHHHTCEEECSCCC--CSSSCHHHHHHHHHHHTCS-SEEEEESSCCHHHHHTTSSCSSE
T ss_pred eeccCHHH-HHHHHHHHHHH-HhhcCCEEEecccc--ccCcCHHHHHHHHHHcCCC-ceEEEECCCchHHHHHHhCCCCc
Confidence 34444444 45677777754 34455899999865 4556778888888887533 4566665 34466666666555
Q ss_pred E
Q psy17516 248 K 248 (264)
Q Consensus 248 ~ 248 (264)
.
T Consensus 168 ~ 168 (201)
T 3r8s_E 168 D 168 (201)
T ss_dssp E
T ss_pred e
Confidence 4
No 432
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=29.02 E-value=20 Score=27.78 Aligned_cols=10 Identities=20% Similarity=0.085 Sum_probs=8.9
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 26 ~GKssli~~l 35 (195)
T 1x3s_A 26 VGKSSLLLRF 35 (195)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999766
No 433
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=28.96 E-value=19 Score=30.91 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=10.1
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 14 vGKSTL~n~L~g 25 (272)
T 3b1v_A 14 SGKTSLFNLITG 25 (272)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHC
Confidence 999999987744
No 434
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.86 E-value=77 Score=22.63 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=28.5
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+++.|++......+|++|-...
T Consensus 50 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 50 HAPDVIITDIRMPKLGG---LEMLDRIKAGGAKPYVIVISAFSE 90 (137)
T ss_dssp HCCSEEEECSSCSSSCH---HHHHHHHHHTTCCCEEEECCCCCC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCcEEEEecCcC
Confidence 47899999976655554 466777777655667787776543
No 435
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=28.76 E-value=22 Score=31.50 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=15.6
Q ss_pred eeeccceee------chhhHHHHhh
Q psy17516 68 SVKVGAMVK------APLRTLLFIS 86 (264)
Q Consensus 68 ~v~~Ge~~~------sGKSTLl~~l 86 (264)
-+++|+++. +|||||+..+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHH
Confidence 588998875 9999999655
No 436
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=28.70 E-value=22 Score=28.07 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=10.3
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+.+.+..
T Consensus 19 sGKST~~~~La~ 30 (203)
T 1uf9_A 19 SGKSTVAALLRS 30 (203)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999988754
No 437
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=28.68 E-value=21 Score=28.03 Aligned_cols=11 Identities=9% Similarity=0.011 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 39 vGKSsli~~l~ 49 (196)
T 2atv_A 39 VGKSALVVRFL 49 (196)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997653
No 438
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=28.64 E-value=16 Score=29.74 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=34.6
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEE--eCcchHhhccce
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS--LKEGMFSNANVI 244 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVT--H~~~~~~~ad~l 244 (264)
..-.++++||...-+|......+..++..+..+.++++.| ....+.+.+...
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 219 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSY 219 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTT
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHH
Confidence 4568999999987666555666777777766678888765 334444444443
No 439
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=28.48 E-value=20 Score=28.62 Aligned_cols=11 Identities=18% Similarity=0.150 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 36 ~GKSsLi~~l~ 46 (217)
T 2f7s_A 36 VGKTTFLYRYT 46 (217)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 440
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=28.43 E-value=21 Score=27.87 Aligned_cols=11 Identities=18% Similarity=0.024 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 34 ~GKSsl~~~l~ 44 (194)
T 3reg_A 34 VGKTCLLLAFS 44 (194)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 89999998653
No 441
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=28.42 E-value=21 Score=28.17 Aligned_cols=11 Identities=18% Similarity=0.009 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 31 ~GKSsli~~l~ 41 (213)
T 3cph_A 31 VGKSCLLVRFV 41 (213)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999997653
No 442
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=28.41 E-value=85 Score=23.74 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=30.7
Q ss_pred hcCCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEe
Q psy17516 191 LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSL 233 (264)
Q Consensus 191 l~~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH 233 (264)
+..+..++++..|...+.......+.+++..... .+++|++|
T Consensus 73 lF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~-~~~lvi~~ 114 (140)
T 1jql_B 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHD-DLLLIVRG 114 (140)
T ss_dssp TTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCS-SCCEEEEC
T ss_pred CCCCCEEEEEECCCCCCChHHHHHHHHHHhcCCC-CEEEEEEe
Confidence 5667789999999887766667777778876544 45666665
No 443
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=28.40 E-value=24 Score=28.70 Aligned_cols=10 Identities=20% Similarity=-0.011 Sum_probs=8.9
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
|||||++..+
T Consensus 34 sGKStil~ai 43 (203)
T 3qks_A 34 SGKSSLLDAI 43 (203)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999766
No 444
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=28.36 E-value=1.1e+02 Score=21.82 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=27.5
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
.+|+++++|--..+.|.. .+++.|++......+|++|...
T Consensus 43 ~~~dlvl~D~~lp~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 43 EWVQVIICDQRMPGRTGV---DFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp SCEEEEEEESCCSSSCHH---HHHHHHHHHCTTSEEEEEESCT
T ss_pred CCCCEEEEeCCCCCCcHH---HHHHHHHHhCCCCcEEEEeCCC
Confidence 578999999876666643 5666676654456677777553
No 445
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=28.27 E-value=21 Score=27.94 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=8.4
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 31 vGKSsL~~~~ 40 (184)
T 3ihw_A 31 SGKSALVHRY 40 (184)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8999999644
No 446
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=28.26 E-value=21 Score=27.68 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=9.0
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 33 ~GKssli~~l 42 (189)
T 2x77_A 33 AGKTSILYRL 42 (189)
T ss_dssp SSHHHHHHHT
T ss_pred CCHHHHHHHH
Confidence 9999999866
No 447
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=28.24 E-value=1e+02 Score=26.08 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHh
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRH 222 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~ 222 (264)
..+.++++||... ++......+...+.+.
T Consensus 89 ~~~~~l~lDEi~~-l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 89 EEGDILFIDEIHR-LSRQAEEHLYPAMEDF 117 (324)
T ss_dssp CTTCEEEETTTTS-CCHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCcc-cccchHHHHHHHHHhh
Confidence 4568999999974 7777778888888764
No 448
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=28.18 E-value=74 Score=29.61 Aligned_cols=11 Identities=18% Similarity=-0.085 Sum_probs=9.5
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 235 vGKSSLln~L~ 245 (462)
T 3geh_A 235 VGKSSLLNAWS 245 (462)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998764
No 449
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=28.14 E-value=21 Score=27.69 Aligned_cols=11 Identities=18% Similarity=-0.127 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.++
T Consensus 15 sGKsTla~~La 25 (175)
T 1via_A 15 SGKSTLARALA 25 (175)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998774
No 450
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=28.11 E-value=19 Score=28.17 Aligned_cols=11 Identities=9% Similarity=-0.312 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.++
T Consensus 20 sGKsT~~~~La 30 (196)
T 2c95_A 20 SGKGTQCEKIV 30 (196)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998774
No 451
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.09 E-value=1e+02 Score=20.81 Aligned_cols=40 Identities=8% Similarity=-0.001 Sum_probs=27.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~ 235 (264)
.+|+++++|-...+.|. ..+.+.+++.. ....+|++|...
T Consensus 44 ~~~dlii~d~~~~~~~~---~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 44 LQPIVILMAWPPPDQSC---LLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp HCCSEEEEECSTTCCTH---HHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhccccCCCCEEEEeCCC
Confidence 46899999976665554 36667777654 456677777653
No 452
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=28.08 E-value=20 Score=28.43 Aligned_cols=11 Identities=18% Similarity=-0.318 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 34 vGKSsLi~~l~ 44 (195)
T 3cbq_A 34 VGKSTLAGTFG 44 (195)
T ss_dssp SSHHHHHHHTC
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 453
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=28.05 E-value=1.9e+02 Score=24.78 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=15.3
Q ss_pred eeeccceee------chhhHHHHhh
Q psy17516 68 SVKVGAMVK------APLRTLLFIS 86 (264)
Q Consensus 68 ~v~~Ge~~~------sGKSTLl~~l 86 (264)
-+++|+++. +|||||...+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~l 118 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQS 118 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHH
Confidence 578998775 9999998654
No 454
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=27.96 E-value=24 Score=27.45 Aligned_cols=11 Identities=18% Similarity=-0.233 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 14 sGKsT~a~~L~ 24 (196)
T 1tev_A 14 AGKGTQCARIV 24 (196)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 455
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=27.88 E-value=1e+02 Score=22.25 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=27.5
Q ss_pred cCCCCEEEeecCCCCCCHHHHHHHHHHHHH--hhcCCeEEEEEeCc
Q psy17516 192 FKPAPLYILDEVDAALDLSHTQNIGQMLKR--HFKTSQFIIVSLKE 235 (264)
Q Consensus 192 ~~~~~illlDEPta~LD~~~~~~i~~ll~~--~~~~~q~IiVTH~~ 235 (264)
-.+|+++|+|--..+.| ...+++.|++ ...+..+|++|...
T Consensus 49 ~~~~dlii~D~~l~~~~---g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 49 QAKYDLIILDIGLPIAN---GFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp TCCCSEEEECTTCGGGC---HHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred cCCCCEEEEeCCCCCCC---HHHHHHHHHhcccccCCCEEEEeCCC
Confidence 36789999997655444 4467777776 33456788888653
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=27.88 E-value=23 Score=28.01 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 36 ~GKSsli~~l~ 46 (201)
T 2gco_A 36 CGKTCLLIVFS 46 (201)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997663
No 457
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=27.65 E-value=1.5e+02 Score=21.11 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=27.7
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+.+.+++.. ....+|++|....
T Consensus 58 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ls~~~~ 100 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNG---IEFLKELRDDSSFTDIEVFVLTAAYT 100 (143)
T ss_dssp CCCSEEEEETTCTTSCH---HHHHHHHTTSGGGTTCEEEEEESCCC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcCccccCCcEEEEeCCCC
Confidence 46899999976655554 36666666544 4566888886543
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=27.57 E-value=22 Score=29.87 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=12.9
Q ss_pred eccceee------chhhHHHHhhh
Q psy17516 70 KVGAMVK------APLRTLLFISM 87 (264)
Q Consensus 70 ~~Ge~~~------sGKSTLl~~l~ 87 (264)
++|-++. |||||+.+.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 4555554 99999998764
No 459
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=27.41 E-value=22 Score=28.00 Aligned_cols=11 Identities=9% Similarity=-0.001 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 39 ~GKSsli~~l~ 49 (199)
T 2p5s_A 39 VGKSSFLMRLC 49 (199)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998663
No 460
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.31 E-value=23 Score=28.29 Aligned_cols=11 Identities=18% Similarity=0.141 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 23 ~GKTsl~~~l~ 33 (218)
T 1nrj_B 23 SGKTSLLTLLT 33 (218)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 461
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=27.30 E-value=20 Score=33.05 Aligned_cols=12 Identities=8% Similarity=0.027 Sum_probs=10.3
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 33 vGKSTL~n~Ltg 44 (396)
T 2ohf_A 33 VGKSTFFNVLTN 44 (396)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHC
Confidence 999999998743
No 462
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=27.13 E-value=16 Score=29.18 Aligned_cols=11 Identities=9% Similarity=-0.064 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 22 ~GKSsli~~l~ 32 (218)
T 4djt_A 22 VGKTTYINRVL 32 (218)
T ss_dssp SSHHHHHCBCT
T ss_pred CCHHHHHHHHh
Confidence 99999997653
No 463
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.10 E-value=1.5e+02 Score=20.69 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=27.4
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~ 235 (264)
.+|+++|+|--..+.|. ..+.+.+++.. .+..+|++|...
T Consensus 46 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 46 HPPDVLISDVNMDGMDG---YALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp SCCSEEEECSSCSSSCH---HHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhCCccCCCCEEEEeCCC
Confidence 67899999976655554 46677777653 356688888653
No 464
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=27.03 E-value=1.4e+02 Score=23.48 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+++.+++...+..+|++|....
T Consensus 45 ~~~dlvllD~~l~~~~g---~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 45 EPFDVVILDIMLPVHDG---WEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHTTCCCCEEEEESSCH
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCCEEEEeCCCC
Confidence 57899999976665554 366667776555677888886543
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=26.93 E-value=24 Score=28.34 Aligned_cols=10 Identities=10% Similarity=-0.227 Sum_probs=8.8
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 37 vGKSsLi~~l 46 (201)
T 2ew1_A 37 VGKTCLVRRF 46 (201)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999765
No 466
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=26.92 E-value=1.9e+02 Score=22.08 Aligned_cols=31 Identities=6% Similarity=-0.084 Sum_probs=19.1
Q ss_pred HHHHHHHHHhh--cCCeEEEEEeCcchHhhccc
Q psy17516 213 QNIGQMLKRHF--KTSQFIIVSLKEGMFSNANV 243 (264)
Q Consensus 213 ~~i~~ll~~~~--~~~q~IiVTH~~~~~~~ad~ 243 (264)
.++.+.+.++. .+.+++||||...+-.....
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~~~i~~l~~~ 118 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHLPLVGYLVAE 118 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEeCHHHHHHHHHH
Confidence 35555555543 35688999999765444333
No 467
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=26.91 E-value=35 Score=27.33 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=33.2
Q ss_pred CCCCEEEeecCCCCCC-HHHHHHHHHHHHHhhcCCeEEEEE--eCcchHhhcccee
Q psy17516 193 KPAPLYILDEVDAALD-LSHTQNIGQMLKRHFKTSQFIIVS--LKEGMFSNANVIF 245 (264)
Q Consensus 193 ~~~~illlDEPta~LD-~~~~~~i~~ll~~~~~~~q~IiVT--H~~~~~~~ad~l~ 245 (264)
..-.++++||...-++ ......+..+++....+.++|+.| -...+.+.+...+
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 212 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFM 212 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTC
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHc
Confidence 4568999999998776 344455555555554567888765 3444444555433
No 468
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=26.86 E-value=1.6e+02 Score=20.60 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=27.3
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhh--cCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHF--KTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~--~~~q~IiVTH~~ 235 (264)
.+|+++++|--..+.|. ..+++.|++.. ....+|++|...
T Consensus 54 ~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG---REVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCCcccH---HHHHHHHHcCcccccccEEEEecCC
Confidence 47899999976665554 36677777654 356677777654
No 469
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=26.79 E-value=1e+02 Score=26.58 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=29.5
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhh-----------cCCeEEEEEeCc
Q psy17516 195 APLYILDEVDAALDLSHTQNIGQMLKRHF-----------KTSQFIIVSLKE 235 (264)
Q Consensus 195 ~~illlDEPta~LD~~~~~~i~~ll~~~~-----------~~~q~IiVTH~~ 235 (264)
..++++||... |.......++..+.+.. .+..+|.+|++.
T Consensus 97 ~g~L~LDEi~~-l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 97 GGTLFLDEIGD-ISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp TSEEEEESCTT-CCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred CCEEEEecccc-CCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 47999999885 77877888888887542 135677888764
No 470
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.73 E-value=29 Score=30.39 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=16.0
Q ss_pred eeeeccceee------chhhHHHHhh
Q psy17516 67 FSVKVGAMVK------APLRTLLFIS 86 (264)
Q Consensus 67 ~~v~~Ge~~~------sGKSTLl~~l 86 (264)
--+++|+++. +|||||+..+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~l 127 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQL 127 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHH
Confidence 3588998775 9999998655
No 471
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=26.53 E-value=32 Score=32.33 Aligned_cols=24 Identities=8% Similarity=-0.068 Sum_probs=17.8
Q ss_pred ccceeeeccceee----chhhHHHHhhh
Q psy17516 64 MSSFSVKVGAMVK----APLRTLLFISM 87 (264)
Q Consensus 64 ~v~~~v~~Ge~~~----sGKSTLl~~l~ 87 (264)
.+++.+++|=++. +|||||++.++
T Consensus 43 ~~g~~~p~gvLL~GppGtGKT~Laraia 70 (476)
T 2ce7_A 43 RIGARMPKGILLVGPPGTGKTLLARAVA 70 (476)
T ss_dssp TTTCCCCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4667777885443 99999998763
No 472
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=26.53 E-value=25 Score=27.70 Aligned_cols=11 Identities=0% Similarity=0.012 Sum_probs=9.0
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 31 vGKTsLi~~l~ 41 (196)
T 3llu_A 31 SGKSSIQKVVF 41 (196)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998553
No 473
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=26.48 E-value=25 Score=28.20 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=9.3
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 39 vGKSsLi~~l~ 49 (205)
T 1gwn_A 39 CGKTALLHVFA 49 (205)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 474
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=26.47 E-value=21 Score=31.03 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=26.4
Q ss_pred CCCCEEEeecCCCCCCHH-HHHHHHHHHHHhh-----cCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLS-HTQNIGQMLKRHF-----KTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~-~~~~i~~ll~~~~-----~~~q~IiVTH~~~ 236 (264)
..|.++++||+..-.+.. ....+..+++... .+..+|++|++..
T Consensus 129 ~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 129 RGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp CSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred CCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 346699999998643321 3445555555442 2456778888763
No 475
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=26.44 E-value=23 Score=27.05 Aligned_cols=11 Identities=9% Similarity=-0.191 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 11 sGKsT~a~~L~ 21 (168)
T 2pt5_A 11 SGKSTVGSLLS 21 (168)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998774
No 476
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=26.36 E-value=24 Score=28.66 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=9.4
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 40 vGKSsLin~l~ 50 (228)
T 2qu8_A 40 VGKSSFMNIVS 50 (228)
T ss_dssp SSHHHHHHHHT
T ss_pred CCHHHHHHHHh
Confidence 99999998663
No 477
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=26.30 E-value=24 Score=27.04 Aligned_cols=11 Identities=9% Similarity=-0.218 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 13 sGKsT~a~~La 23 (173)
T 1e6c_A 13 CGMTTVGRELA 23 (173)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998764
No 478
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=26.17 E-value=1.8e+02 Score=21.15 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=28.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.|++++|+|=-..+.|. ..+++.+++......+|++|-...
T Consensus 47 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 87 (151)
T 3kcn_A 47 DPFSVIMVDMRMPGMEG---TEVIQKARLISPNSVYLMLTGNQD 87 (151)
T ss_dssp CCCSEEEEESCCSSSCH---HHHHHHHHHHCSSCEEEEEECGGG
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHhcCCCcEEEEEECCCC
Confidence 34599999976666554 366667776656677888876543
No 479
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.10 E-value=1.2e+02 Score=21.88 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=27.8
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHH--hhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKR--HFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~--~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+++.|++ .....-+|++|....
T Consensus 51 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 51 THPHLIITEANMPKISG---MDLFNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHTSTTTTTSCEEEEESSCC
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHcCcccCCCCEEEEeCCCC
Confidence 36899999976665554 366667776 334567888886543
No 480
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=26.10 E-value=16 Score=30.07 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEE--eCcchHhhcccee
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS--LKEGMFSNANVIF 245 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVT--H~~~~~~~ad~l~ 245 (264)
..-.++++||...-+|......+..+++.+..+.++|+.| -...+.+.+...+
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l 226 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFM 226 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHC
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHC
Confidence 3457999999986666555566666777666677888765 4444445555443
No 481
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=26.06 E-value=14 Score=29.26 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=33.6
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEE--eCcchHhhccce
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS--LKEGMFSNANVI 244 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVT--H~~~~~~~ad~l 244 (264)
..-.++++||...-+|......+..++.....+.++|+.| ....+.+.++..
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHH
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHH
Confidence 4568999999987666555556666666555577888765 444444555544
No 482
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=26.02 E-value=24 Score=27.68 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 31 ~GKssl~~~l~ 41 (201)
T 2q3h_A 31 VGKTSLVVSYT 41 (201)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999997653
No 483
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=26.01 E-value=24 Score=29.85 Aligned_cols=12 Identities=8% Similarity=-0.100 Sum_probs=9.9
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
+|||||++.+.+
T Consensus 16 vGKTsL~n~l~g 27 (258)
T 3a1s_A 16 VGKTSLFNALTG 27 (258)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHHC
Confidence 999999987643
No 484
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=25.99 E-value=35 Score=29.78 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCCCEEEeecCCC-CCCHHHHHHHHH-HHHHh-hcCCeEEEEEeC
Q psy17516 193 KPAPLYILDEVDA-ALDLSHTQNIGQ-MLKRH-FKTSQFIIVSLK 234 (264)
Q Consensus 193 ~~~~illlDEPta-~LD~~~~~~i~~-ll~~~-~~~~q~IiVTH~ 234 (264)
..++++++||... .+++.....++. ++... ..+..+|++|+.
T Consensus 213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp HTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 3568999999943 344443433444 66543 345677787774
No 485
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.81 E-value=95 Score=29.19 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=29.5
Q ss_pred HHHhhcCCCCEEEeecCCCCCC----------HHHHHHHHHHHHHhh---c-CC-eEEEEEeCcchH
Q psy17516 187 LAMLLFKPAPLYILDEVDAALD----------LSHTQNIGQMLKRHF---K-TS-QFIIVSLKEGMF 238 (264)
Q Consensus 187 la~~l~~~~~illlDEPta~LD----------~~~~~~i~~ll~~~~---~-~~-q~IiVTH~~~~~ 238 (264)
|..|....|-++++||.++-.. ......+..+|.++- . +. -+|..|.++..+
T Consensus 295 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 295 FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 3344456778999999997652 222334455665542 2 22 234567766554
No 486
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=25.74 E-value=26 Score=27.45 Aligned_cols=10 Identities=20% Similarity=-0.097 Sum_probs=8.7
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 32 vGKTsLi~~l 41 (187)
T 3c5c_A 32 AGKSALTVKF 41 (187)
T ss_dssp SSHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9999999755
No 487
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=25.62 E-value=1.2e+02 Score=21.50 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEE-eC
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS-LK 234 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVT-H~ 234 (264)
.+|+++|+|--..+.|.. .+++.|++.....-+|++| ..
T Consensus 59 ~~~dlvilD~~l~~~~g~---~~~~~l~~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSIF---SLLDIVKEQTKQPSVLILTTGR 98 (138)
T ss_dssp GSCSEEEEETTCTTSCHH---HHHHHHTTSSSCCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhhCCCCCEEEEECCC
Confidence 468999999766665543 5566666544466788888 54
No 488
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=25.59 E-value=1.6e+02 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=28.1
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKE 235 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~ 235 (264)
.+|+++|+|--..+.|.. .+++.+++...+..+|++|...
T Consensus 50 ~~~dlvllD~~l~~~~g~---~~~~~l~~~~~~~~ii~lt~~~ 89 (233)
T 1ys7_A 50 NRPDAIVLDINMPVLDGV---SVVTALRAMDNDVPVCVLSARS 89 (233)
T ss_dssp SCCSEEEEESSCSSSCHH---HHHHHHHHTTCCCCEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhcCCCCCEEEEEcCC
Confidence 578999999766555543 6666777655566788887643
No 489
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=25.56 E-value=23 Score=28.48 Aligned_cols=10 Identities=20% Similarity=-0.091 Sum_probs=8.5
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
||||||+..+
T Consensus 15 sGKTTl~~~L 24 (169)
T 1xjc_A 15 SGKTTLMEKW 24 (169)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999655
No 490
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=25.54 E-value=26 Score=27.57 Aligned_cols=10 Identities=30% Similarity=0.291 Sum_probs=8.9
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 40 vGKSsLi~~l 49 (192)
T 2b6h_A 40 AGKTTILYKL 49 (192)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999865
No 491
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=25.26 E-value=33 Score=27.79 Aligned_cols=57 Identities=9% Similarity=-0.008 Sum_probs=35.0
Q ss_pred CCCCEEEeecCCC----CCCHHHHHHHHHHHHHhhc--CCeEEEEEeCcch-----------HhhccceeEEEe
Q psy17516 193 KPAPLYILDEVDA----ALDLSHTQNIGQMLKRHFK--TSQFIIVSLKEGM-----------FSNANVIFRTKF 249 (264)
Q Consensus 193 ~~~~illlDEPta----~LD~~~~~~i~~ll~~~~~--~~q~IiVTH~~~~-----------~~~ad~l~~v~~ 249 (264)
..+++++.|-.+. .-|.....++...|+.+++ +.++++++|-... -..||.++.+..
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~~ 207 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEEE
Confidence 5678999997543 1245556666776776654 6778888874321 135887766543
No 492
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=25.25 E-value=26 Score=32.79 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=14.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhh
Q psy17516 203 VDAALDLSHTQNIGQMLKRHF 223 (264)
Q Consensus 203 Pta~LD~~~~~~i~~ll~~~~ 223 (264)
+.+.|++.....+.++...+.
T Consensus 285 ~l~~L~~~F~~~l~~l~~~i~ 305 (447)
T 3q5d_A 285 KLKEIDDEFIKNLKILIPWLL 305 (447)
T ss_dssp BGGGSCHHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHHHHHHhc
Confidence 335688888887777666654
No 493
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=25.18 E-value=27 Score=28.07 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=9.2
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 45 vGKSsli~~l~ 55 (214)
T 2j1l_A 45 CGKTSLLMVFA 55 (214)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999997653
No 494
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=25.16 E-value=26 Score=27.26 Aligned_cols=11 Identities=9% Similarity=-0.303 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.++
T Consensus 16 sGKst~a~~La 26 (185)
T 3trf_A 16 AGKTSVGSQLA 26 (185)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998774
No 495
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=25.16 E-value=28 Score=27.32 Aligned_cols=11 Identities=9% Similarity=-0.321 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
|||||+.+.+.
T Consensus 23 sGKsT~a~~L~ 33 (199)
T 2bwj_A 23 SGKGTQCEKLV 33 (199)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998774
No 496
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=25.15 E-value=18 Score=27.88 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=0.9
Q ss_pred chhhHHHHhh
Q psy17516 77 APLRTLLFIS 86 (264)
Q Consensus 77 sGKSTLl~~l 86 (264)
+|||||++.+
T Consensus 19 ~GKssl~~~l 28 (183)
T 2fu5_C 19 VGKTCVLFRF 28 (183)
T ss_dssp C---------
T ss_pred CCHHHHHHHH
Confidence 9999999765
No 497
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=25.14 E-value=26 Score=28.47 Aligned_cols=12 Identities=17% Similarity=-0.081 Sum_probs=10.2
Q ss_pred chhhHHHHhhhh
Q psy17516 77 APLRTLLFISME 88 (264)
Q Consensus 77 sGKSTLl~~l~~ 88 (264)
|||||+.+.+..
T Consensus 23 SGKSTva~~L~~ 34 (192)
T 2grj_A 23 TGKSTVCEILKN 34 (192)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999987753
No 498
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.12 E-value=1.2e+02 Score=21.74 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=27.8
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|--..+.|. ..+++.|++......+|++|....
T Consensus 47 ~~~dlvllD~~l~~~~g---~~l~~~l~~~~~~~~ii~ls~~~~ 87 (137)
T 3cfy_A 47 SKPQLIILDLKLPDMSG---EDVLDWINQNDIPTSVIIATAHGS 87 (137)
T ss_dssp HCCSEEEECSBCSSSBH---HHHHHHHHHTTCCCEEEEEESSCC
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCEEEEEecCc
Confidence 46899999976555554 356667776555667888886543
No 499
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.04 E-value=91 Score=22.55 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=28.9
Q ss_pred CCCCEEEeecCCCCCCHHHHHHHHHHHHHhhcCCeEEEEEeCcc
Q psy17516 193 KPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEG 236 (264)
Q Consensus 193 ~~~~illlDEPta~LD~~~~~~i~~ll~~~~~~~q~IiVTH~~~ 236 (264)
.+|+++|+|=-..+ .+...+++.|++......+|++|-...
T Consensus 66 ~~~dlvi~D~~l~~---~~g~~~~~~l~~~~~~~~ii~lt~~~~ 106 (146)
T 4dad_A 66 DAFDILMIDGAALD---TAELAAIEKLSRLHPGLTCLLVTTDAS 106 (146)
T ss_dssp TTCSEEEEECTTCC---HHHHHHHHHHHHHCTTCEEEEEESCCC
T ss_pred CCCCEEEEeCCCCC---ccHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 57899999975443 445577777777666677888886543
No 500
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=24.94 E-value=28 Score=29.31 Aligned_cols=11 Identities=0% Similarity=-0.188 Sum_probs=9.6
Q ss_pred chhhHHHHhhh
Q psy17516 77 APLRTLLFISM 87 (264)
Q Consensus 77 sGKSTLl~~l~ 87 (264)
+|||||++.+.
T Consensus 47 ~GKSSLin~l~ 57 (262)
T 3def_A 47 VGKSSTVNSLI 57 (262)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99999998764
Done!