RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17516
(264 letters)
>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic
SMC2 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 251
Score = 203 bits (519), Expect = 3e-65
Identities = 80/95 (84%), Positives = 90/95 (94%)
Query: 163 GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH 222
GG+WKESL ELSGGQRSLVALSL+LA+LLFKPAP+YILDEVDAALDLSHTQNIG+M+K H
Sbjct: 157 GGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH 216
Query: 223 FKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVT 257
FK SQFI+VSLKEGMF+NANV+FRT+FVDG S VT
Sbjct: 217 FKGSQFIVVSLKEGMFNNANVLFRTRFVDGTSTVT 251
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 163 bits (415), Expect = 8e-46
Identities = 60/175 (34%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 91 TKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGK 150
+++ +E + KLL+VIEELD++K+ +E + K+N +F IF L G A+L
Sbjct: 984 SQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPD 1043
Query: 151 DILD-GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
D L G+E++ G +SL LSGG++SL AL+L+ A+ ++PAP Y+LDEVDAALD
Sbjct: 1044 DPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDD 1103
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTVNRKN 264
++ + + +++K K +QFI+++ ++G A+ + V++ V+
Sbjct: 1104 ANVERVARLIKEMSKETQFIVITHRKGTMEAADRLVGVTMQ--EKGVSKVVSVDL 1156
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 146 bits (370), Expect = 7e-40
Identities = 51/165 (30%), Positives = 85/165 (51%)
Query: 88 EAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPP 147
+ + K+ + E + L ++IEE ++ K L F L L GS
Sbjct: 994 DELKKERLEEEKKELLREIIEETCQRFKEFLELFVSINRGLNKVFFYLELGGSAELRLED 1053
Query: 148 AGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAAL 207
+ G+E++ G ++L LSGG+++LVAL+L+ A+ ++PAP Y+LDE+DAAL
Sbjct: 1054 SDDPFSGGIEISARPPGKGVKNLDNLSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAAL 1113
Query: 208 DLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDG 252
D + + LK K +QFI++SL+E M A+ + V+
Sbjct: 1114 DDQNVSRVANYLKELSKNAQFIVISLREEMLEKADRLVGVYMVEN 1158
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 114 bits (288), Expect = 1e-31
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK-TSQFIIV 231
LSGG++SL AL+L+ A+ KP+P Y+LDE+DAALD ++ + + M+K K TSQFI++
Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154
Query: 232 SLKEGMFSNANVIFRTKFVDGNS 254
+LK+ MF NA+ + FV G S
Sbjct: 155 TLKKEMFENADKLIGVLFVHGVS 177
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 114 bits (287), Expect = 1e-28
Identities = 47/138 (34%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 96 VESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD- 154
+ + L + IEE+D + + ++ + +VN +F +F L G +A+L +D+L+
Sbjct: 1012 LTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEA 1071
Query: 155 GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQN 214
G+E+ G ++L LSGG+++L AL+L+ A+ KPAP ILDEVDA LD ++ +
Sbjct: 1072 GIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVER 1131
Query: 215 IGQMLKRHFKTSQFIIVS 232
+LK K +QFI+++
Sbjct: 1132 FANLLKEFSKNTQFIVIT 1149
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 106 bits (266), Expect = 6e-26
Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 32/273 (11%)
Query: 5 EVTRKYQKLKEQRDKLE-RTVDKKAQLSLRNEEN---QFKVGAMVKAPLKTLLFISMKKY 60
E+ RK ++L+ Q +K R + KA+L EE + G + P + L ++
Sbjct: 900 ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAE 959
Query: 61 LGSMSSFSVKVGAMVKAPLRTLLFISMEAM--------------TKKSIVESDRAKLLKV 106
L + + +R L ++M A+ K++ +E +R +L+
Sbjct: 960 LQRV-----------EEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008
Query: 107 IEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD-GLEVNVAFGGL 165
IEE ++KK+ EA+ +N +F IF+ L G+ +L D GLE++ G
Sbjct: 1009 IEEYEKKKREVFMEAFEAINENFNEIFAELSGGT-GELILENPDDPFAGGLELSAKPKGK 1067
Query: 166 WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT 225
+ L +SGG++SL ALS + A+ +KP+P Y DEVD LD + + + ++++
Sbjct: 1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE 1127
Query: 226 SQFIIVSLKEGMFSNA-NVIFRTKFVDGNSNVT 257
+QFI+VSL+ M A I T +G S V
Sbjct: 1128 AQFIVVSLRSPMIEYADRAIGVTMRRNGESQVF 1160
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 95.2 bits (238), Expect = 5e-24
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQF 228
L LSGG+++L AL+L+ A+ +P+P +LDEVDAALD ++ + ++LK K +QF
Sbjct: 110 RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQF 169
Query: 229 IIVSLKEGMFSNANVIF 245
I+++ ++G A+ ++
Sbjct: 170 IVITHRKGTMEAADRLY 186
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 88.2 bits (219), Expect = 1e-21
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF-KTSQ 227
+ +LSGG++ L AL+L+LA+ KP PLYILDE+D LD Q + + + H K +Q
Sbjct: 74 TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQ 133
Query: 228 FIIVSLKEGMFSNANVIFRTKFVDGN 253
I+++ + A+ + K V
Sbjct: 134 VIVITHLPELAELADKLIHIKKVITG 159
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 84.2 bits (209), Expect = 2e-19
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQF 228
+ +LSGGQ+SLVAL+L+ A+ PAP Y+ DE+DAALD + + M+K +QF
Sbjct: 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQF 214
Query: 229 IIVSLKEGMFSNANVIFRTKFVDGNSNV 256
I + + + A+ + KF + S +
Sbjct: 215 ITTTFRPELLEVADKFYGVKFRNKVSTI 242
>gnl|CDD|213241 cd03274, ABC_SMC4_euk, ATP-binding cassette domain of eukaryotic
SMC4 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 212
Score = 82.0 bits (203), Expect = 6e-19
Identities = 38/98 (38%), Positives = 63/98 (64%), Gaps = 10/98 (10%)
Query: 166 WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT 225
WK ++ LSGG+++L +L+LV A+ +KP PLY++DE+DAALD + + +K K
Sbjct: 122 WK-NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKN 180
Query: 226 SQFIIVSLKEGMFSNANV---IFRTKFVDGNSNVTRTV 260
+QFI++SL+ MF A+ I++T +N T++V
Sbjct: 181 AQFIVISLRNNMFELADRLVGIYKT------NNCTKSV 212
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 76.8 bits (190), Expect = 9e-17
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH-FKTSQFIIV 231
LSGG++++ AL+L+ A+ ++PAP ++LDEVDAALD ++ + ++ QFI++
Sbjct: 156 LSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVI 215
Query: 232 SLKEGMFSNA 241
SLKE FS A
Sbjct: 216 SLKEEFFSKA 225
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 63.0 bits (154), Expect = 2e-12
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 144 LSPPAGKDILDGLEVNVAFGGLWKESLG---ELSGGQRSLVALSLVLAMLLFKPAPLYIL 200
L P +G+ ++DG ++ + +G +LSGGQR VAL A L L +L
Sbjct: 49 LKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVAL----ARALLLNPDLLLL 104
Query: 201 DEVDAALDLSHTQNIGQMLKRHFKT-SQFIIVS 232
DE + LD + + + ++L+ + IIV+
Sbjct: 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 48.2 bits (116), Expect = 7e-07
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
GL S LSGGQ+ VA++ VLAM P + +LDE A LD + + + ++LK+
Sbjct: 126 GLRDRSPFTLSGGQKQRVAIAGVLAM---DP-DILLLDEPTAGLDPAGRRELLELLKK 179
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 46.3 bits (111), Expect = 3e-06
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQF 228
ELSGG+R V L A L + P+ +LDE + LD++H + ++L+R +
Sbjct: 94 PFNELSGGERQRVLL----ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGK 149
Query: 229 IIV 231
+V
Sbjct: 150 TVV 152
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 45.7 bits (109), Expect = 1e-05
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
DGL+ + GG LSGGQ +AL A L PA L +LDE A LD Q
Sbjct: 444 DGLDTVIGEGGA------GLSGGQAQRLAL----ARALLSPASLLLLDEPTAHLDAETEQ 493
Query: 214 NIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFR 246
I Q L+ K ++++ + ++A+ I
Sbjct: 494 IILQALQELAKQKTVLVITHRLEDAADADRIVV 526
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 44.9 bits (107), Expect = 1e-05
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 143 KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202
L ++ + V L LSGGQ+ VA++ VLAM P + +LDE
Sbjct: 109 GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM---GPE-ILLLDE 164
Query: 203 VDAALDLSHTQNIGQMLKR 221
A LD + + ++LK+
Sbjct: 165 PTAGLDPKGRRELLELLKK 183
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 43.1 bits (103), Expect = 3e-05
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 165 LWKESLGE--LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQN-IGQMLKR 221
L+ ++ E LSGGQR +A+ A L + P+ ILDE +ALD T+ I + L+
Sbjct: 87 LFSGTIRENILSGGQRQRIAI----ARALLRDPPILILDEATSALD-PETEALILEALRA 141
Query: 222 HFKTSQFIIVSLKEGMFSNANVIF 245
K I+++ + +A+ I
Sbjct: 142 LAKGKTVIVIAHRLSTIRDADRII 165
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 41.5 bits (98), Expect = 4e-05
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202
L +E +G LSGGQ+ VA +A L K L +LDE
Sbjct: 83 LDREPVGTLSGGQKQRVA----IARALLKKPKLLLLDE 116
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 42.1 bits (100), Expect = 9e-05
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
V L +GELSGGQ+ V L A L + L +LDE A +D ++I ++L
Sbjct: 120 VGLSELADRQIGELSGGQQQRVLL----ARALVQDPDLLLLDEPFAGVDPKTQEDIYELL 175
Query: 220 KR 221
+
Sbjct: 176 RE 177
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 41.9 bits (99), Expect = 1e-04
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH 222
G+LS GQ+ VAL A L PAPL+ILDE ALD + ++ H
Sbjct: 129 GQLSAGQQRRVAL----ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 42.8 bits (101), Expect = 1e-04
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
DG + V G+ LSGGQR +A+ A L + P+ ILDE +ALD
Sbjct: 453 DGYDTIVGERGV------NLSGGQRQRLAI----ARALLRNPPILILDEATSALDTETEA 502
Query: 214 NIGQMLKRHFKTSQFIIVSLKEGMFSNANVI 244
I LK+ K +I++ + NA+ I
Sbjct: 503 LIQDALKKLLKGRTTLIIAHRLSTIKNADRI 533
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 41.0 bits (97), Expect = 2e-04
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQ 227
+ ELSGG+R V + A L + P+ +LDE + LD++H + ++L+ +
Sbjct: 134 RPVDELSGGERQRVLI----ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG 189
Query: 228 FIIV 231
+V
Sbjct: 190 LTVV 193
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 39.4 bits (93), Expect = 3e-04
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LSGG++ +AL A LL + L +LDE LDL + + + LK + T I+VS
Sbjct: 71 LSGGEKMRLAL----AKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGT--VILVS 124
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 40.2 bits (94), Expect = 4e-04
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT 225
+LS GQ+ L LA L PAPL++LDE A LDL + +M+ H +
Sbjct: 137 QLSAGQKK----RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 40.3 bits (95), Expect = 5e-04
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF 223
L +GELSGGQ+ V +LA L + L +LDE +D++ + I +LK
Sbjct: 131 DLRDRQIGELSGGQKQRV----LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186
Query: 224 KTSQFIIV 231
+ + +++
Sbjct: 187 QEGKTVLM 194
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 39.5 bits (93), Expect = 6e-04
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 170 LGELSGGQRSLVALSLVLA--MLLFKPAPLYILDEVDAALDLSH-TQNIGQMLK--RHFK 224
G SGG++ L +L + LA + LDE LD + +++ ++++ + K
Sbjct: 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK 172
Query: 225 TSQFIIVSLKEGMFSNANVIFRTK 248
Q I+++ E + A+ I+R +
Sbjct: 173 NFQLIVITHDEELVDAADHIYRVE 196
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 40.3 bits (95), Expect = 7e-04
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQN-IGQMLKRHFKTSQFIIV 231
LSGGQR +AL A L + +LDE +ALD T+ I Q L + + II+
Sbjct: 610 LSGGQRQRLAL----ARALLSKPKILLLDEATSALD-PETEAIILQNLLQILQGRTVIII 664
Query: 232 SLKEGMFSNANVIF 245
+ + +A+ I
Sbjct: 665 AHRLSTIRSADRII 678
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 39.3 bits (92), Expect = 7e-04
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 142 AKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201
A + A + I D L V G +LS GQ+ +AL A L APL+ILD
Sbjct: 98 AAIHGGAQRTIEDALA-AVGLTGFEDLPAAQLSAGQQRRLAL----ARLWLSRAPLWILD 152
Query: 202 EVDAALDLSHTQNIGQMLKRH 222
E ALD + + +L+ H
Sbjct: 153 EPTTALDKAGVALLAGLLRAH 173
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 40.1 bits (94), Expect = 8e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
GL+ + G LSGGQR +A+ A L K AP+ ILDE +ALD +
Sbjct: 457 LGLDTPIGENG------VLLSGGQRQRLAI----ARALLKDAPILILDEATSALDNESER 506
Query: 214 NIGQMLKR 221
+ L+R
Sbjct: 507 LVQAALER 514
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 40.3 bits (94), Expect = 9e-04
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 151 DILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAM--LLFKPAPLYILDEVDAALD 208
D+ + V+ GG+ E + LSGG+++ VA +L +A+ L L I+DE A LD
Sbjct: 781 DVDQDFNITVSRGGM-VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
Query: 209 LSHTQNIGQMLKRHFKTS----QFIIVSLKEGMFSNANVIFRTKFVDGNSNV 256
N+ +++ K S Q I++S + S A+V + K G+S V
Sbjct: 840 EDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEVKKSSGSSKV 891
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 39.3 bits (92), Expect = 0.001
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 172 ELSGGQRSLVALSLVLAMLL-FKPAPLYI-LDEVDAALDLSHTQNIGQMLK 220
LSGG++ V L+ VLA L P+ ++ LDE +ALD++H + ++ +
Sbjct: 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 39.1 bits (91), Expect = 0.001
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
ELSGG++ +AL + L F P L +LDE+ +ALD S+ +NI +M+ R+ + ++
Sbjct: 133 ELSGGEKQRIAL---IRNLQFMPKIL-LLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 38.8 bits (91), Expect = 0.001
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211
L +LSGGQR LAM+L + P+ +LDE LD++H
Sbjct: 136 LTDLSGGQRQRA----FLAMVLAQDTPVVLLDEPTTYLDINH 173
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 39.0 bits (92), Expect = 0.001
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 172 ELSGGQRSLVALSLVLAMLLF--KPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+LSGG++ V L+ VLA L P +LDE +ALDL+H ++ ++ ++
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 39.5 bits (93), Expect = 0.001
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
DGL++ + G LSGGQR VAL+ LL P P+ +LDE +A+D +
Sbjct: 589 DGLDMQIGERGR------SLSGGQRQAVALA---RALLRDP-PILLLDEPTSAMDNRSEE 638
Query: 214 NIGQMLKR 221
LKR
Sbjct: 639 RFKDRLKR 646
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 38.3 bits (90), Expect = 0.001
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
G LS GQ+ VAL A LL P++ILDE AALD +
Sbjct: 126 GYLSAGQKRRVAL----ARLLVSNRPIWILDEPTAALD-AAAV 163
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 38.8 bits (91), Expect = 0.002
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAP-LYILDEVDAALDLSHTQ----NIGQMLKRHFKTS 226
ELSGGQR +A++ L P P L ILDE +ALD+S Q N+ LK+ +
Sbjct: 141 ELSGGQRQRIAIARALI-----PEPKLLILDEPTSALDVS-VQAQILNLLLELKKERGLT 194
Query: 227 QFIIVS 232
++ +S
Sbjct: 195 -YLFIS 199
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
++ L GL + LSGG R VA LA L + L +LDE LDL
Sbjct: 136 EEALLGLGFPD-----EDRPVSSLSGGWRRRVA----LARALLEEPDLLLLDEPTNHLDL 186
Query: 210 SHTQNIGQMLKRHFKTSQFIIVS 232
+ + LKR+ T I+VS
Sbjct: 187 ESIEWLEDYLKRYPGT--VIVVS 207
Score = 35.3 bits (82), Expect = 0.027
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 163 GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
G ++ +G LSGG+++ L+LA LL +P L +LDE LD+
Sbjct: 430 GEDQEKPVGVLSGGEKA----RLLLAKLLLQPPNLLLLDEPTNHLDI 472
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 38.5 bits (90), Expect = 0.002
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+ + ELSGG+ VA++ L+ K A +Y+LDE A LD
Sbjct: 107 QILDREVPELSGGELQRVAIAACLS----KDADIYLLDEPSAYLD 147
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 38.5 bits (90), Expect = 0.002
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
V G K GELSGGQR VA LA L + P+ +LDE +ALD
Sbjct: 117 VGLAGFLKRLPGELSGGQRQRVA----LARCLVREQPILLLDEPFSALD 161
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
V G + +LS GQ+ VAL A LL PL+ILDE ALD + + +
Sbjct: 113 VGLNGFEDRPVAQLSAGQQRRVAL----ARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
Query: 220 KRH 222
H
Sbjct: 169 AGH 171
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 38.8 bits (91), Expect = 0.002
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 101 AKLLKVIEELDEKK----KIALREAWLKVNTDFGSIFSLLLPGSQAK-LSPPAGKDILDG 155
KLL + + DE K++ + ++ + D G++ LL ++ S +I+
Sbjct: 384 VKLLAGVIKPDEGSEEDLKVSYKPQYISPDYD-GTVEDLLRSAIRSAFGSSYFKTEIVKP 442
Query: 156 LEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI 215
L + L + + ELSGG+ VA+ A L + A LY+LDE A LD+ +
Sbjct: 443 LNL----EDLLERPVDELSGGELQRVAI----AAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 216 GQMLKR 221
++++R
Sbjct: 495 AKVIRR 500
Score = 31.5 bits (72), Expect = 0.43
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 163 GGLWKESLGELSGG--QRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
+ + ELSGG QR +A +L+ + A +Y DE + LD+ N ++++
Sbjct: 204 ENVLDRDVSELSGGELQRVAIAAALL------RDADVYFFDEPSSYLDIRQRLNAARVIR 257
Query: 221 RHFKTSQFIIV 231
+ +++IV
Sbjct: 258 ELAEDGKYVIV 268
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 38.9 bits (91), Expect = 0.002
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 102 KLLKVIEELDEK----KKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDGLE 157
K L+ +EEL EK K + A KV IF L G K S K + ++
Sbjct: 718 KALERVEELREKVKKYKALLKERALSKVGEIASEIFEELTEG---KYSGVRVKAEENKVK 774
Query: 158 VNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPA--PLYILDEVDAALDLSHTQNI 215
+ V + G + L LSGG+R + L+ LA+ L+ PL ILDE LD + +
Sbjct: 775 LFVVYQGK-ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKL 833
Query: 216 GQMLKRHF-KTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNV 256
+++R+ K Q IIVS E + A+ + R G S V
Sbjct: 834 VDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSLEGGVSKV 875
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 38.0 bits (89), Expect = 0.003
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 170 LGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+GE LSGGQ +AL A + APL +LDE A LD
Sbjct: 452 IGEGGAGLSGGQAQRLAL----ARAFLRDAPLLLLDEPTAHLD 490
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 37.5 bits (88), Expect = 0.004
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK 224
LS GQR L L LA L + + + +LDE A++D I + ++ FK
Sbjct: 140 LSVGQRQL----LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK 187
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 37.2 bits (87), Expect = 0.004
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
+GL++ + G LSGGQR VA LA L P+ +LDE +A+D++ +
Sbjct: 128 NGLDLQIGERGR------GLSGGQRQAVA----LARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 214 NIGQMLKRHFKTSQFIIVSLKEGMFSNANVI 244
+ + L++ II++ + + + I
Sbjct: 178 RLKERLRQLLGDKTLIIITHRPSLLDLVDRI 208
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 37.1 bits (86), Expect = 0.004
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
V GL K GELSGG+R VA LA +L + P+ +LDE AALD
Sbjct: 116 VGLAGLEKRLPGELSGGERQRVA----LARVLVRDKPVLLLDEPFAALD 160
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 37.1 bits (86), Expect = 0.004
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
E +LSGGQ+ VA+ A L + + ILDE +ALD Q + Q L
Sbjct: 146 EKGSQLSGGQKQRVAI----ARALIRNPQVLILDEATSALDAESEQQVQQAL 193
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 37.0 bits (85), Expect = 0.005
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR-HFKT 225
K + +S G + L+AL L L L K L ++DE + L + + ++LK K
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKG-SLLLIDEPENGLHPKLLRKLVELLKELSEKG 242
Query: 226 SQFIIVS 232
+Q I +
Sbjct: 243 AQLIFTT 249
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 36.7 bits (86), Expect = 0.006
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH 222
LS GQ+ VAL A L APL+ILDE A+D + +L +H
Sbjct: 130 LSAGQQRRVAL----ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 37.2 bits (87), Expect = 0.006
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+LSGGQ+ VA++ LA P L + DE +ALD TQ+I ++LK
Sbjct: 141 QLSGGQKQRVAIARALAN---NPKIL-LCDEATSALDPETTQSILELLKD 186
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 37.6 bits (88), Expect = 0.006
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ----NIGQMLKRHFKTS 226
ELSGGQR VA++ LA+ +P L ILDE +ALD+S Q N+ + L+ +
Sbjct: 428 HELSGGQRQRVAIARALAL---EPK-LLILDEPVSALDVS-VQAQVLNLLKDLQEELGLT 482
Query: 227 QFIIVS 232
++ +S
Sbjct: 483 -YLFIS 487
Score = 37.2 bits (87), Expect = 0.007
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+LSGG R V ++AM L L I DE ALD++ I +LK
Sbjct: 154 QLSGGMRQRV----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKD 199
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 36.0 bits (83), Expect = 0.008
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 144 LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203
L P D DG+ K +LSGG+ VA+ A L + A Y+ DE
Sbjct: 49 LIPNGDNDEWDGITPVY------KPQYIDLSGGELQRVAI----AAALLRNATFYLFDEP 98
Query: 204 DAALDLSHTQNIGQMLKR---HFKTSQFII 230
A LD+ N + ++R K + ++
Sbjct: 99 SAYLDIEQRLNAARAIRRLSEEGKKTALVV 128
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 36.4 bits (84), Expect = 0.008
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQR VA LA L +P P+ +LDE +ALD
Sbjct: 127 EQLSGGQRQRVA----LARCLVRPNPILLLDEPFSALD 160
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 36.4 bits (85), Expect = 0.008
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQR +A+ A L K P+ ILDE +ALD
Sbjct: 139 LSGGQRQRIAI----ARALLKDPPILILDEATSALD 170
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 36.4 bits (85), Expect = 0.008
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 164 GLWKE-----SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQM 218
LW E LSGGQ+ + L+ LA +P L +LDE +ALD T I ++
Sbjct: 128 ALWDEVKDRLHALGLSGGQQQRLCLARALAN---EPEVL-LLDEPTSALDPISTAKIEEL 183
Query: 219 LKRHFKTSQFIIVS 232
+ K +IV+
Sbjct: 184 IAELKKEYTIVIVT 197
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 35.9 bits (84), Expect = 0.009
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 24/82 (29%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQN------IGQMLKRHFKT- 225
LSGGQ+ ++ LA ++ A +Y+LD+ +A+D +H I +L + KT
Sbjct: 128 LSGGQKQRIS----LARAVYSDADIYLLDDPLSAVD-AHVGRHIFENCILGLLLNN-KTR 181
Query: 226 ------SQFI-----IVSLKEG 236
Q + IV L G
Sbjct: 182 ILVTHQLQLLPHADQIVVLDNG 203
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 36.2 bits (84), Expect = 0.010
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
ELSGGQ+ VA++ V+AM +P L ILDE A LD
Sbjct: 144 ELSGGQKRRVAIAGVVAM---EPKIL-ILDEPTAGLD 176
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 36.6 bits (85), Expect = 0.010
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 170 LGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
LGE LSGGQR +A+ A + K AP+ +LDE +ALD Q + Q L+
Sbjct: 470 LGERGVTLSGGQRQRIAI----ARAILKDAPILLLDEATSALDAESEQLVQQALET 521
>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 36.4 bits (85), Expect = 0.010
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 173 LSGGQRSLVALSLVLA-----MLLFKPAPLYILDEVDAALDLSH 211
S GQ+ +AL+L LA P+ +LD+V + LD
Sbjct: 276 ASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGR 319
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 36.1 bits (84), Expect = 0.011
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+G LSGGQR ALSL++A L P + +LDE AALD
Sbjct: 146 IGLLSGGQRQ--ALSLLMATL--HPPKILLLDEHTAALD 180
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 36.1 bits (84), Expect = 0.012
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 170 LGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT-QNIGQMLKRHF- 223
+GE LSGG++ VA+ A + K P+ +LDE +ALD +HT + I L+
Sbjct: 131 VGERGLKLSGGEKQRVAI----ARAILKNPPILLLDEATSALD-THTEREIQAALRDVSK 185
Query: 224 -KTSQFIIVSLKEGMFSNANVIF 245
+T+ I L + NA+ I
Sbjct: 186 GRTTIVIAHRLSTIV--NADKII 206
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 35.7 bits (83), Expect = 0.015
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
ELSGGQR + ++ LA+ P L + DE +ALD+S I +LK
Sbjct: 109 ELSGGQRQRIGIARALAL---NPK-LIVADEPVSALDVSVQAQILNLLKD 154
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 35.6 bits (83), Expect = 0.016
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
ELSGGQR VA++ LA+ P L I DE +ALD+S I +LK+
Sbjct: 145 ELSGGQRQRVAIARALAL---NP-KLLIADEPTSALDVSVQAQILDLLKK 190
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 34.9 bits (81), Expect = 0.018
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 159 NVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQM 218
N+A G LSGGQ+ VAL+ LAM P + +LDE +ALD + + +
Sbjct: 96 NIALG---------LSGGQQQRVALARALAM---DP-DVLLLDEPTSALDPITRREVRAL 142
Query: 219 LKRHFKTSQFIIV 231
LK +V
Sbjct: 143 LKSLQAQLGITVV 155
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 35.1 bits (81), Expect = 0.022
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTS 226
+++ ELSGG++ ++L + L F P L +LDE+ +ALD S+ N+ +++ R+ +
Sbjct: 132 TKNIAELSGGEKQRISL---IRNLQFMPKVL-LLDEITSALDESNKHNVNEIIHRYVREQ 187
Query: 227 Q 227
Sbjct: 188 N 188
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 35.6 bits (83), Expect = 0.023
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
++ +LSGG+ VA+ A L + A LY+LDE A LD
Sbjct: 450 NVKDLSGGELQRVAI----AACLSRDADLYLLDEPSAHLD 485
Score = 30.9 bits (71), Expect = 0.69
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 165 LWKESLGELSGG--QRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
+ + ELSGG QR +A +L+ + A Y DE + LD I Q L
Sbjct: 205 ILDRDISELSGGELQRVAIAAALL------RDADFYFFDEPTSYLD------IRQRLN 250
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 35.4 bits (82), Expect = 0.026
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LSGG+R +AL A L APL++LDE LD + + +L H + ++V+
Sbjct: 475 LSGGERRRLAL----ARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVT 530
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 35.0 bits (81), Expect = 0.028
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
ELSGGQ VA++ VLAM +P L +LDE A LD + + +M + K V
Sbjct: 145 ELSGGQMRRVAIAGVLAM---EPEVL-VLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTV 200
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 35.2 bits (81), Expect = 0.030
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSH 211
LSGG+R V L+ LA + P+ +LDE A+LD++H
Sbjct: 139 SLSGGERQRVLLARALA----QATPVLLLDEPTASLDINH 174
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 34.8 bits (80), Expect = 0.030
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 17/69 (24%)
Query: 148 AGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLL----FKPAPLYIL-DE 202
AG L G +V LSGG+ + V + VLA L P Y+L DE
Sbjct: 133 AGATALVGRDVTT------------LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 203 VDAALDLSH 211
AALDL+H
Sbjct: 181 PTAALDLAH 189
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 35.1 bits (81), Expect = 0.032
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQF 228
S GELS R ++AL +VL+ I DEVD + Q I + L + + Q
Sbjct: 442 SGGELS---RVMLALKVVLSSS--AAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQV 496
Query: 229 IIVS 232
+ V+
Sbjct: 497 LCVT 500
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 35.0 bits (81), Expect = 0.033
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 173 LSGGQRSLVALSLVLAM--LLF------KPAPLYILDEVDAALDLSHTQNIGQMLK---- 220
LSGG+R+L LSL A+ LL P P ILDE LD H + Q++
Sbjct: 782 LSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGH---VSQLVDLVES 838
Query: 221 -RHFKTSQFIIVSLKEGMFSNANVIFR 246
R Q ++VS + + A+ + R
Sbjct: 839 MRRLGVEQIVVVSHDDELVGAADDLVR 865
>gnl|CDD|213243 cd03276, ABC_SMC6_euk, ATP-binding cassette domain of eukaryotic
SM6 proteins. The structural maintenance of chromosomes
(SMC) proteins are large (approximately 110 to 170 kDa),
and each is arranged into five recognizable domains.
Amino-acid sequence homology of SMC proteins between
species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 198
Score = 34.1 bits (79), Expect = 0.034
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTS---QFI 229
LSGG+RS + L+L++ +P LDE D +D+ + + +L + K QFI
Sbjct: 110 LSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFI 169
Query: 230 IVS 232
++
Sbjct: 170 FIT 172
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 34.2 bits (79), Expect = 0.035
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
LSGGQ+ +A++ A LL L I DE + LD + + +G++++ + +IV
Sbjct: 126 SLSGGQKQRLAIA---AALLSGK-DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV 181
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 34.2 bits (79), Expect = 0.037
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
G+LSGGQR VA LA L + P+ +LDE +ALD
Sbjct: 128 GQLSGGQRQRVA----LARCLVREQPILLLDEPFSALD 161
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 34.4 bits (80), Expect = 0.054
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 171 GELSGGQRSLVALSLVLA-MLLFK----PAPLYILDEVDAALDLSH 211
S GQ+ L+ L+L LA L K AP+ +LD+V + LD
Sbjct: 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGR 317
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 33.6 bits (78), Expect = 0.059
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
ELSGGQ+ VAL+ LA +P L +LDE +ALD + + + LK + +
Sbjct: 130 ELSGGQQQRVALARALAR---EP-SLLLLDEPLSALDAKLREELREELKELQRELGITTI 185
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 34.2 bits (79), Expect = 0.060
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQR +A+ A L + +P+ ILDE +ALD
Sbjct: 481 LSGGQRQRIAI----ARALLRDSPILILDEATSALD 512
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 33.3 bits (77), Expect = 0.065
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 20/94 (21%)
Query: 144 LSPPAGKDILDGLEVNV----AFGG----------LWKESLGE--LSGGQRSLVALSLVL 187
L P +G+ LDG +++ G L+ S+ E LSGGQR + L
Sbjct: 52 LRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL---- 107
Query: 188 AMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
A L+ + +LDE ++ LD+ + + Q +
Sbjct: 108 ARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 34.2 bits (79), Expect = 0.066
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGG+R+ L+LA L KP+ L ILDE LD
Sbjct: 441 LSGGERN----RLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 33.7 bits (78), Expect = 0.067
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQF 228
S GELS R ++AL +LA P I DE+D + Q +G+ LK ++ Q
Sbjct: 172 SGGELS---RLMLALKAILAR--KDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQV 226
Query: 229 IIVS 232
+ ++
Sbjct: 227 LCIT 230
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 33.9 bits (78), Expect = 0.069
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
+G + V GL +LSGG++ VA+ A + K P+ ILDE +ALD Q
Sbjct: 387 EGYDTGVGERGL------KLSGGEKQRVAI----ARTILKNPPILILDEATSALDTHTEQ 436
Query: 214 NIGQMLKRHFK 224
I L+
Sbjct: 437 AIQAALREVSA 447
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 34.0 bits (79), Expect = 0.076
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 170 LGE----LSGG-QRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK 224
LGE LSGG QR L +A L APL +LDE LD + I ++L H +
Sbjct: 469 LGEGGRQLSGGEQRRLG-----IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ 523
Query: 225 TSQFIIVS 232
++++
Sbjct: 524 NKTVLMIT 531
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 33.4 bits (77), Expect = 0.082
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 142 AKLSPPAGKDILDGLEVNVAFGGLW---KESLGELSGGQRSLVALSLVLAMLLFKPAPLY 198
A+L + ++ + +E + GL + + LSGG + LS+ LA LL P L
Sbjct: 103 ARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQR--LSIALA-LLHDP-ELL 158
Query: 199 ILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
ILDE + LD + I ++L+ K I+
Sbjct: 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTIL 191
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 33.8 bits (78), Expect = 0.088
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
E SGGQR +A++ L + KP L +LDE +ALD S + +L+
Sbjct: 426 EFSGGQRQRIAIARALIL---KPE-LILLDEPTSALDRSVQAQVLDLLRD 471
Score = 33.0 bits (76), Expect = 0.14
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
ELSGGQR V ++AM L L I DE ALD++ I +LK
Sbjct: 157 ELSGGQRQRV----MIAMALANEPDLLIADEPTTALDVTVQAQILDLLK 201
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 33.2 bits (76), Expect = 0.092
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LSGGQR +A+ A L + I DE +ALD I + + II++
Sbjct: 139 LSGGQRQRIAI----ARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIA 194
Query: 233 LKEGMFSNANVI 244
+ NA+ I
Sbjct: 195 HRLSTVKNADRI 206
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 33.5 bits (77), Expect = 0.096
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAP-LYILDEVDAALD 208
G+LSGGQ+ VAL+ LA +P L +LDE +ALD
Sbjct: 133 GQLSGGQQQRVALARALA-----TSPGLLLLDEPLSALD 166
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 33.2 bits (77), Expect = 0.097
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 163 GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
L GELS GQ+ + ++ LA P L +LDE A L+ T+ + ++++
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALAT---DPK-LLLLDEPAAGLNPEETEELAELIRE 188
>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF. RecF is a
recombinational DNA repair ATPase that maintains
replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 270
Score = 33.4 bits (77), Expect = 0.097
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 174 SGGQRSLVALSLVLAML-----LFKPAPLYILDEVDAALDLS 210
S GQ+ +AL+L LA + + P+ +LD+V A LDL
Sbjct: 185 SQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLG 226
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 33.0 bits (76), Expect = 0.100
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
V G +LSGGQ+ VA++ L +P L +LDE ALDL +++ L
Sbjct: 118 VQLEGYANRKPSQLSGGQQQRVAIARALVN---EPKVL-LLDEPLGALDLKLRKDMQLEL 173
Query: 220 KRHFKT--SQFIIVS 232
KR K F+ V+
Sbjct: 174 KRLQKELGITFVFVT 188
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 33.0 bits (76), Expect = 0.10
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
+G + + G G LS G+R L L++ AML + + ILDE + +D +
Sbjct: 127 NGYDTVLGENG------GNLSQGERQL--LAIARAML--RDPKILILDEATSNIDTETEK 176
Query: 214 NIGQMLKRHFKTSQFIIVS 232
I + L++ K II++
Sbjct: 177 LIQEALEKLMKGRTSIIIA 195
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 33.1 bits (76), Expect = 0.10
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQR VAL+ LA+ +P L +LDE ALD
Sbjct: 136 QLSGGQRQRVALARALAV---EPKVL-LLDEPFGALD 168
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 33.6 bits (77), Expect = 0.11
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 130 GSIFSLLLPGSQAKLSPPAGKDILDGLEVN-------VAFGGLWKESLGELSGGQRSLVA 182
GSI LL G++ +S + E+ + + E +SGGQ+ +A
Sbjct: 562 GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621
Query: 183 LSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI-GQMLKRHFKTSQFI 229
L A L + + ILDE + LD + I +L KT F+
Sbjct: 622 L----ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFV 665
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 32.9 bits (76), Expect = 0.12
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQ+ VA++ LAM P + + DE +ALD
Sbjct: 134 AQLSGGQQQRVAIARALAM---NP-KVMLFDEPTSALD 167
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 33.2 bits (75), Expect = 0.12
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK 224
W++S ELSGGQ VA++ +LAM +P L +LDE A LD + Q+ + +
Sbjct: 137 FWEKSPFELSGGQMRRVAIAGILAM---EPEVL-VLDEPTAGLDPKARIEMMQLFESIHQ 192
Query: 225 TSQFIIV 231
+ Q +++
Sbjct: 193 SGQTVVL 199
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 33.1 bits (76), Expect = 0.13
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGG+R +AL A L AP+ +LDE LD
Sbjct: 472 LSGGERQRLAL----ARALLADAPILLLDEPTEHLD 503
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 33.0 bits (75), Expect = 0.13
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
L +S+ LSGGQR +++VLA + + +LDE LD+SH ++ ++L
Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLA----QETAIMLLDEPTTWLDISHQIDLLELL 186
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 33.3 bits (76), Expect = 0.13
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
LSGG+R +A+ A + K AP+ +LDE +ALD+
Sbjct: 471 RLSGGERQRLAI----ARAILKNAPILVLDEATSALDV 504
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 32.8 bits (75), Expect = 0.13
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
ELSGGQ+ VAL+ +LAM +P L + DE A LD + I ++ K + II+
Sbjct: 165 ELSGGQKRRVALAGILAM---EPDFL-VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIIL 220
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 32.5 bits (75), Expect = 0.14
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR-HFKTSQFIIV 231
SGG++ + L +LL +P L ILDE D+ LD+ + + +++ + + +I+
Sbjct: 105 FSGGEKKRNEI---LQLLLLEPD-LAILDEPDSGLDIDALRLVAEVINKLREEGKSVLII 160
Query: 232 S 232
+
Sbjct: 161 T 161
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 32.7 bits (75), Expect = 0.14
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LSGGQ+ VA++ +LAM KP + +LDE + LD I ++L K II+S
Sbjct: 138 LSGGQKKRVAIAGILAM---KPE-IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIIS 193
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 32.3 bits (74), Expect = 0.16
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
+ L +LSGG++ VAL+ L +P L +LDE +ALD + + L
Sbjct: 119 LGLDHLLNRYPAQLSGGEKQRVALA---RALAAQPE-LLLLDEPFSALDRALRLQLLPEL 174
Query: 220 KR 221
K+
Sbjct: 175 KQ 176
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 33.0 bits (76), Expect = 0.16
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 155 GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ- 213
L++N A +G L GQ+ LV + A L K A L ILDE A+L S T
Sbjct: 132 KLDINPA------TPVGNLGLGQQQLVEI----AKALNKQARLLILDEPTASLTESETAV 181
Query: 214 --NIGQMLKRH 222
+I + LK H
Sbjct: 182 LLDIIRDLKAH 192
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 33.0 bits (76), Expect = 0.18
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGG+R +A+ A L K P+ ILDE +ALD
Sbjct: 472 LSGGERQRLAI----ARALLKDPPILILDEATSALD 503
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 32.9 bits (76), Expect = 0.18
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
LS GQ A L LA L +P L +LDE A+LD Q + Q L
Sbjct: 486 LSVGQ----AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 32.1 bits (74), Expect = 0.21
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 24/128 (18%)
Query: 107 IEELDEKKKIALREAWLKVNTDFGSIF-------------SLLLPGSQAKLSPPAGKDIL 153
+ +L EK+ LR G +F ++ LP A S K
Sbjct: 69 LTKLSEKELAKLR------RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAA 122
Query: 154 DGLEVNVAFGGLWKESL-GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT 212
+ L + + ELSGGQ+ VA++ L P + + DE LD
Sbjct: 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN---NPKII-LADEPTGNLDSKTA 178
Query: 213 QNIGQMLK 220
+ + ++L+
Sbjct: 179 KEVLELLR 186
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 32.3 bits (74), Expect = 0.22
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
L ELSGGQR +AM+L + +LDE LD+ H+ I ++L+R
Sbjct: 133 LDELSGGQRQRA----FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 32.6 bits (75), Expect = 0.23
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQF 228
S GELS R ++AL ++L+ P I DEVD + Q +G+ L+R + Q
Sbjct: 433 SGGELS---RIMLALKVILSRKDDTPT--LIFDEVDTGISGRVAQAVGKKLRRLSEHHQV 487
Query: 229 IIVS 232
+ V+
Sbjct: 488 LCVT 491
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 32.6 bits (74), Expect = 0.24
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
D L+ A GG LS GQR LV L A L + + +LDE AA+DL
Sbjct: 1409 DKLDHECAEGG------ENLSVGQRQLVCL----ARALLRKTKILVLDEATAAVDLETDN 1458
Query: 214 NIGQMLKRHFKT 225
I ++ F+
Sbjct: 1459 LIQSTIRTQFED 1470
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 32.5 bits (74), Expect = 0.24
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ---NIGQMLKRH 222
+G+ GGQ+ LV + A L K A L ILDE ++L T+ +I + LK H
Sbjct: 139 VGDYGGGQQQLVEI----AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 32.4 bits (74), Expect = 0.25
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 170 LGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
LGE LS GQ+ L+AL+ VL + P L ILDE A +D Q I Q L
Sbjct: 470 LGEQGNNLSVGQKQLLALARVL---VQTPQIL-ILDEATANIDSGTEQAIQQALA 520
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 31.9 bits (73), Expect = 0.25
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 143 KLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202
K+ P KDI+D L V + LSGGQ+ VA++ VLA+ P + I DE
Sbjct: 113 KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL---NPE-IIIFDE 168
Query: 203 VDAALD 208
+ LD
Sbjct: 169 STSMLD 174
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 31.8 bits (73), Expect = 0.27
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+LSGGQ+ V ++ LA P L + DE +ALD TQ+I +L+
Sbjct: 139 AQLSGGQKQRVGIARALAN---NPKVL-LCDEATSALDPETTQSILALLRD 185
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 31.4 bits (72), Expect = 0.27
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LSGG+R V+++L L P L LDE + LD S + +L+R T + II S
Sbjct: 112 LSGGERKRVSIALELVS---NP-SLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167
Query: 233 L 233
+
Sbjct: 168 I 168
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 31.6 bits (72), Expect = 0.28
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LSGGQ+ VA++ VLA+ P+ + ILDE + LD QN+ ++++ I+S
Sbjct: 143 LSGGQKQRVAIAGVLAL---NPSVI-ILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS 198
Query: 233 L 233
+
Sbjct: 199 I 199
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 32.3 bits (73), Expect = 0.29
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 150 KDILD----GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205
KD++D GL+ V+ GG E+ S GQR L L LA L + + + +LDE A
Sbjct: 1351 KDVIDRNPFGLDAEVSEGG---ENF---SVGQRQL----LSLARALLRRSKILVLDEATA 1400
Query: 206 ALDLSHTQNIGQMLKRHFKTSQFIIVS 232
++D+ I + ++ FK+ ++++
Sbjct: 1401 SVDVRTDSLIQRTIREEFKSCTMLVIA 1427
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 31.8 bits (72), Expect = 0.29
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
LSGGQ+ VA++ LA P L + DE +ALD + TQ+I ++LK
Sbjct: 141 LSGGQKQRVAIARALAS---NPKVL-LCDEATSALDPATTQSILELLK 184
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 31.6 bits (71), Expect = 0.31
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 164 GLWKE-------SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIG 216
GLWKE +LSGGQ+ + ++ LA+ KP L ++DE + +D+ ++Q I
Sbjct: 138 GLWKEVYDRLNSPASQLSGGQQQRLTIARALAL---KPKVL-LMDEPTSMIDIVNSQAIE 193
Query: 217 QMLKRHFKTSQFIIVS 232
+++ +IVS
Sbjct: 194 KLITELKNEIAIVIVS 209
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 31.3 bits (71), Expect = 0.34
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQR VAL+ LA+ +P L +LDE ALD
Sbjct: 130 QLSGGQRQRVALARALAV---EPQVL-LLDEPFGALD 162
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 31.8 bits (73), Expect = 0.35
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK---RHFKTSQF 228
ELSGG R V +++ L P L I DE ALD++ I +LK R T+
Sbjct: 153 ELSGGMRQRVMIAM---ALALNP-KLLIADEPTTALDVTVQAQILDLLKELQREKGTALI 208
Query: 229 II 230
+I
Sbjct: 209 LI 210
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 31.7 bits (72), Expect = 0.35
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQR VAL+ LA K L +LDE ALD
Sbjct: 149 QLSGGQRQRVALARSLA----KRPKLLLLDEPMGALD 181
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 31.4 bits (71), Expect = 0.37
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
L +GELSGGQR V ++ LA +P+ + +LDE LD+ + + ++
Sbjct: 106 LADRPVGELSGGQRQRVLVARALAT---RPS-VLLLDEPFTGLDMPTQELLTELF 156
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 31.6 bits (72), Expect = 0.38
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
E SGGQR +A++ L+ KP+ L ILDE ++LD + I +LK
Sbjct: 424 AEFSGGQRQRIAIARA---LILKPS-LIILDEPTSSLDKTVQAQILALLK 469
Score = 31.6 bits (72), Expect = 0.45
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
+LSGG+R V ++AM L L I DE ALD+S I Q+L+
Sbjct: 156 QLSGGERQRV----MIAMALLTRPELLIADEPTTALDVSVQAQILQLLR 200
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 31.5 bits (71), Expect = 0.38
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 150 KDILD-GLEVNVAFGGLWKE-------SLGELSGGQRSLVALSLVLAMLLFKPAPLYILD 201
K +LD +E ++ LW E S LSGGQ+ + ++ LAM KPA L +LD
Sbjct: 134 KSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM---KPAVL-LLD 189
Query: 202 EVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
E +ALD I +++ + IIV+
Sbjct: 190 EPASALDPISNAKIEELITELKEEYSIIIVT 220
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 31.5 bits (72), Expect = 0.38
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
LSGG++ VA+ L L P L ++DE A+LDL + I L+R I+
Sbjct: 129 LSGGEKQRVAIGRAL---LTAPE-LLLMDEPLASLDLPRKREILPYLERLRDEINIPIL 183
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 31.6 bits (72), Expect = 0.40
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 172 ELSGGQRSLVALSLVLAM-LLFKPAPLYILDEVDAALDLSHTQNIGQM---LKRHFKTSQ 227
E SGG R V ++AM LL +P L I DE ALD++ I + LKR F T+
Sbjct: 161 EFSGGMRQRV----MIAMALLCRPK-LLIADEPTTALDVTVQAQIMTLLNELKREFNTAI 215
Query: 228 FII 230
+I
Sbjct: 216 IMI 218
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 30.9 bits (70), Expect = 0.41
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LSGG++ VA++ +AM +P L +LDE A LD + + + +L+R +++S
Sbjct: 128 LSGGEKKRVAIAGAVAM---RPDVL-LLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIS 183
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 31.3 bits (71), Expect = 0.44
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
ELSGGQ VA++ +LAM +P L +LDE A LD
Sbjct: 145 ELSGGQMRRVAIAGILAM---EPKIL-VLDEPTAGLD 177
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.7 bits (72), Expect = 0.44
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 167 KESLGELSGGQRSLVALSLVLAM----LLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH 222
+ LSGG+R L +L+L LA+ L LDE LD + + ++L+
Sbjct: 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEEL 869
Query: 223 FKT-SQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTV 260
Q II+S E + A+V R K G S V
Sbjct: 870 LSDGRQIIIISHVEELKERADVRIRVKKDGGRSRVEVVS 908
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 30.9 bits (71), Expect = 0.44
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQ+ VA++ LAM P + + DE +ALD
Sbjct: 135 AQLSGGQQQRVAIARALAM---DP-KVMLFDEPTSALD 168
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 30.8 bits (70), Expect = 0.48
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTS 226
E LS GQR L L LA L K + +LDE A++D + I + ++ F S
Sbjct: 120 SEGGLNLSQGQRQL----LCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNS 175
Query: 227 QFIIVS 232
+ ++
Sbjct: 176 TILTIA 181
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 31.0 bits (71), Expect = 0.51
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 163 GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQM---L 219
G L G LS GQ+ + ++ LA +P L +LDE A L+ T+ + ++ L
Sbjct: 140 GELADRPAGNLSYGQQRRLEIARALAT---QP-KLLLLDEPAAGLNPEETEELAELIREL 195
Query: 220 KRHFKTSQFII 230
+ + +I
Sbjct: 196 RDRGGVTILLI 206
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 31.0 bits (71), Expect = 0.56
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 150 KDILDGLEVNVAFGGLWKESLGE-LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
K+ + L ++ F + + E SGG++ + L +LL +P L ILDE D+ LD
Sbjct: 124 KEKAELLGLDEEF---LERYVNEGFSGGEKKRNEI---LQLLLLEPK-LAILDEPDSGLD 176
Query: 209 L 209
+
Sbjct: 177 I 177
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 30.8 bits (69), Expect = 0.58
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 164 GLW---KESLGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIG 216
GLW K+ L + LSGGQ+ L+ L+ LA+ P L +LDE +ALD + T+ I
Sbjct: 148 GLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV---NPEVL-LLDEPTSALDPTTTEKIE 203
Query: 217 QMLKRHFKTSQFIIVS 232
+ ++ IIV+
Sbjct: 204 EFIRSLADRLTVIIVT 219
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 30.8 bits (70), Expect = 0.61
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210
LSGGQ+ VA++ +LAM +P + I DE A LD S
Sbjct: 145 LSGGQKQRVAIAGILAM---RPECI-IFDEPTAMLDPS 178
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 30.3 bits (69), Expect = 0.68
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
ELSGG++ VAL A + KP PL + DE +LD + + +L + II+
Sbjct: 134 ELSGGEQQRVAL----ARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIII 189
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 31.2 bits (71), Expect = 0.68
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 155 GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQN 214
GL+ V+ G S GQR L L LA L + + + +LDE AA+D+
Sbjct: 1363 GLDAEVSEAG------ENFSVGQRQL----LSLARALLRRSKILVLDEATAAVDVRTDAL 1412
Query: 215 IGQMLKRHFKTSQFIIVS 232
I + ++ FK+ +I++
Sbjct: 1413 IQKTIREEFKSCTMLIIA 1430
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 30.9 bits (71), Expect = 0.69
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+G+LS QR +V +A L A + ILDE AAL + T+ + +++R
Sbjct: 143 VGDLSIAQRQMVE----IARALSFDARVLILDEPTAALTVKETERLFDLIRR 190
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 31.1 bits (71), Expect = 0.72
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
G + +A GG LSGGQR + ++ L P+ L ILDE +ALD +
Sbjct: 603 GGYDAELAEGG------ANLSGGQRQRLEIARALVR---NPSIL-ILDEATSALDPETEK 652
Query: 214 NIGQMLKR 221
I L+R
Sbjct: 653 IIDDNLRR 660
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 30.0 bits (68), Expect = 0.76
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 162 FGGLWKESLGE-LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
F + +LG SGG+R +AL A +L + AP+ +LDE LD + + ++
Sbjct: 87 FDTTLRNNLGRRFSGGERQRLAL----ARILLQDAPIVLLDEPTVGLDPITERQLLSLIF 142
Query: 221 RHFKTSQFIIVS 232
K I ++
Sbjct: 143 EVLKDKTLIWIT 154
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 30.8 bits (70), Expect = 0.77
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQR VAL+ LA+ +P + +LDE ALD
Sbjct: 138 LSGGQRQRVALARALAV---EP-KVLLLDEPFGALD 169
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 30.5 bits (69), Expect = 0.77
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQ+ VAL+ L FKP L +LDE +ALD
Sbjct: 100 QLSGGQQQRVALARALV---FKPKIL-LLDEPLSALD 132
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 30.8 bits (70), Expect = 0.78
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
DG + + GG LSGGQR +AL A L+ L +LDE ++ LD Q
Sbjct: 442 DGYDTVIGPGG------ATLSGGQRQRIAL----ARALYGDPKLVVLDEPNSNLDEEGEQ 491
Query: 214 NIGQMLKR 221
+ +K
Sbjct: 492 ALANAIKA 499
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 30.1 bits (69), Expect = 0.80
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGG R VAL+ LA+ P L +LDE +ALD
Sbjct: 131 QLSGGMRQRVALARALAV---DPDVL-LLDEPFSALD 163
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 30.1 bits (69), Expect = 0.80
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
+LSGG + +AL A L L ILDE + LD + ++L+ K + I++
Sbjct: 95 KLSGGMKQRLAL----AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150
Query: 232 S 232
S
Sbjct: 151 S 151
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 30.7 bits (70), Expect = 0.82
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQR +A LA L+ L +LDE ++ LD
Sbjct: 473 LSGGQRQRIA----LARALYGDPFLVVLDEPNSNLD 504
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 30.3 bits (68), Expect = 0.83
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
LSGGQ+ + ++ LA+ +P + +LDE +ALD TQ I ++L+ + +IV
Sbjct: 146 RLSGGQQQRLCIARALAV---EPEVI-LLDEPTSALDPIATQRIEKLLEELSENYTIVIV 201
Query: 232 S 232
+
Sbjct: 202 T 202
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 30.5 bits (69), Expect = 0.84
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LSGGQ+ VA++ +LA+ +P + ILDE + LD + + I +++++ K + ++S
Sbjct: 144 LSGGQKQRVAIAGILAV---EPK-IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVIS 199
Query: 233 L 233
+
Sbjct: 200 I 200
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 30.8 bits (70), Expect = 0.89
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT 225
E +LSGGQ+ +A++ L + KP L ILDE +ALD Q + + R +T
Sbjct: 613 EKGSQLSGGQKQRIAIARAL---VRKPRVL-ILDEATSALDAECEQLLQESRSRASRT 666
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 30.2 bits (69), Expect = 0.90
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQM---LKRHFKTSQ 227
ELSGG + VAL+ LA+ P L + DE A LD + I + LK+ +
Sbjct: 135 AELSGGMKKRVALARALAL---DP-ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTS 190
Query: 228 FII 230
++
Sbjct: 191 IMV 193
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 30.2 bits (68), Expect = 0.94
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
LSGGQR + ++ LAM KP L ++DE A +D T I ++L
Sbjct: 148 SNLSGGQRQRLVIARALAM---KPKIL-LMDEPTANIDPVGTAKIEELL 192
>gnl|CDD|213244 cd03277, ABC_SMC5_euk, ATP-binding cassette domain of eukaryotic
SMC5 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 213
Score = 29.9 bits (68), Expect = 0.95
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 174 SGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML----KRHFKTSQFI 229
SGG+RS+ + +L++ P ++DE++ +D ++ + + ML + TSQ+
Sbjct: 128 SGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEG-TSQYF 186
Query: 230 IVSLK 234
+++ K
Sbjct: 187 LITPK 191
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 30.6 bits (69), Expect = 0.95
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 163 GGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
G L + + LSGGQ+S VA A + FK + +LDE LDL + + Q L
Sbjct: 618 GNLALQPMYTLSGGQKSRVA----FAKITFKKPHILLLDEPSNHLDLDAVEALIQGL 670
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 30.1 bits (68), Expect = 0.97
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
LW SGG++ V + A P+ +LDE A+LD ++ Q + +++
Sbjct: 142 LWHLPPATFSGGEQQRVNI----ARGFIADYPILLLDEPTASLDAANRQVVVELIA 193
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 29.9 bits (67), Expect = 0.98
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 143 KLSPPAGKDILD-GLEVNVAFGGLWK-------ESLGELSGGQRSLVALSLVLAMLLFKP 194
+L+ K +LD +E ++ +W ES LSGGQ+ V ++ VLA+ KP
Sbjct: 111 RLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV---KP 167
Query: 195 APLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKF 249
+ +LDE +ALD + I ML Q+ I+ + M + + +T F
Sbjct: 168 -DVILLDEPTSALDPISSTQIENMLLE--LRDQYTIILVTHSMHQASRISDKTAF 219
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 30.0 bits (68), Expect = 0.99
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQ+ VA++ L M +P L + DE AALD
Sbjct: 142 LSGGQQQRVAIARALMM---EPQVL-LFDEPTAALD 173
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 29.8 bits (67), Expect = 1.2
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 116 IALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSG 175
I ++A L + G LP + L A ++ + G + + LSG
Sbjct: 81 ILFQDALLFPHLSVGQNLLFALPAT---LKGNARRNAANAALERSGLDGAFHQDPATLSG 137
Query: 176 GQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
GQR+ VAL L LL +P L +LDE + LD++ Q +
Sbjct: 138 GQRARVAL---LRALLAQPKAL-LLDEPFSRLDVALRDQFRQWV 177
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 29.8 bits (67), Expect = 1.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 199 ILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
ILDE LD + ++LK K Q +++S
Sbjct: 134 ILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLS 167
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 29.7 bits (67), Expect = 1.3
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 122 WLKV--NTDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRS 179
WL V N FG L L G + ++I + V G + + +LSGG R
Sbjct: 88 WLNVIDNVAFG----LQLRG----IEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQ 139
Query: 180 LVALSLVLAMLLFKPAPLYILDEVDAALD 208
V ++ LA+ +P L +LDE ALD
Sbjct: 140 RVGIARALAV---EPQLL-LLDEPFGALD 164
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 29.7 bits (67), Expect = 1.3
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
ELSGGQ+ VA++ LA+ KP L + DE +ALD
Sbjct: 135 SELSGGQQQRVAIARALAV---KPK-LMLFDEPTSALD 168
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 29.6 bits (66), Expect = 1.3
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTS 226
KES LSGGQ+ + ++ +A+ P+ L ++DE +ALD T + +++ H
Sbjct: 141 KESAFALSGGQQQRLCIARAMAV---SPSVL-LMDEPASALDPISTAKVEELI--HELKK 194
Query: 227 QFIIVSLKEGMFSNANVIFRTKF 249
+ IV + M A V +T F
Sbjct: 195 DYTIVIVTHNMQQAARVSDKTAF 217
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 29.7 bits (67), Expect = 1.3
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 165 LW---KESLGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQ 217
LW K+ L E LSGGQ+ + ++ LA+ +P L ++DE +ALD TQ I +
Sbjct: 135 LWDEVKDRLHESALGLSGGQQQRLCIARALAV---EPEVL-LMDEPASALDPIATQKIEE 190
Query: 218 MLKRHFKTSQFIIVSLKEGMFSNANVIFRTKF 249
++ H +++ I+ + M A V T F
Sbjct: 191 LI--HELKARYTIIIVTHNMQQAARVSDVTAF 220
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 29.8 bits (67), Expect = 1.3
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 170 LGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI 215
LGE LSGGQR+ ++ LA ++K A LY+LD LD+ + I
Sbjct: 153 LGEGGITLSGGQRARIS----LARAVYKDADLYLLDSPFGYLDVFTEKEI 198
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 29.5 bits (67), Expect = 1.4
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDE----VDAALDLSHTQNIGQMLKRHFKTSQ 227
+LSGGQR VA L + + ++++DE +DA L + + ++ +R T
Sbjct: 130 QLSGGQRQRVA----LGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTT-- 183
Query: 228 FIIV 231
I V
Sbjct: 184 TIYV 187
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 29.8 bits (68), Expect = 1.5
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+LSGGQ+ VA++ LA P L + DE +ALD + T++I ++LK
Sbjct: 140 QLSGGQKQRVAIARALAS---NPKVL-LCDEATSALDPATTRSILELLKD 185
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 29.9 bits (67), Expect = 1.5
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 167 KESLGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI 215
K LGE LSGGQR+ ++L A ++K A LY+LD LD+ + I
Sbjct: 539 KTVLGEGGITLSGGQRARISL----ARAVYKDADLYLLDSPFTHLDVVTEKEI 587
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 29.4 bits (67), Expect = 1.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGG R VA++ LA L +LDE ALD
Sbjct: 129 HQLSGGMRQRVAIARALAT----RPKLLLLDEPFGALD 162
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 29.7 bits (67), Expect = 1.6
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD-LSHTQNIGQML---KRHFKTS 226
ELSGG + V L+ LA + ++DE +ALD L T+ ++L + KT
Sbjct: 163 NELSGGMQQRVGLARALAN----DPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTI 218
Query: 227 QFIIVSLKEGM 237
FI L E +
Sbjct: 219 VFITHDLDEAL 229
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 29.4 bits (66), Expect = 1.6
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
LSGGQ+ VA++ L M +P L + DE AALD T I ++K
Sbjct: 141 HLSGGQQQRVAIARALMM---EPQVL-LFDEPTAALDPEITAQIVSIIK 185
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 29.4 bits (67), Expect = 1.6
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
DG + V G +LSGGQ+ +A+ A L + + +LDE +ALD
Sbjct: 127 DGYDTLVGERG------SQLSGGQKQRIAI----ARALLRNPKILLLDEATSALD 171
>gnl|CDD|233051 TIGR00611, recf, recF protein. All proteins in this family for
which functions are known are DNA binding proteins that
assist the filamentation of RecA onto DNA for the
initiation of recombination or recombinational repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 365
Score = 29.6 bits (67), Expect = 1.6
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 173 LSGGQRSLVALSLVLA-----MLLFKPAPLYILDEVDAALDLSH 211
S GQ +AL+L LA P+ +LD+V + LD
Sbjct: 276 ASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQR 319
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 29.1 bits (66), Expect = 1.7
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 167 KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
K+ +G LSGG R V ++ L+ P+ L I+DE A LD
Sbjct: 125 KKKIGSLSGGMRRRVGIA---QALVGDPSIL-IVDEPTAGLD 162
>gnl|CDD|221609 pfam12502, DUF3710, Protein of unknown function (DUF3710). This
family of proteins is found in bacteria. Proteins in
this family are typically between 237 and 284 amino
acids in length. There are two conserved sequence
motifs: DLG and DGPRW.
Length = 178
Score = 29.1 bits (66), Expect = 1.7
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 15/66 (22%)
Query: 128 DFGSIFSLLLPGSQAKL-SPPAGKD-----ILDG---LEVNVAF-----GGLWKESLGEL 173
D GS+ + G Q ++ I+ G L + AF GGLW E EL
Sbjct: 18 DLGSLLVPVPEGLQLQVEMDEDTGRPVAVHIVTGHGRLTL-QAFAAPKSGGLWDEVRAEL 76
Query: 174 SGGQRS 179
+ R
Sbjct: 77 AESLRK 82
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 29.4 bits (66), Expect = 1.8
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQ+ VA++ LAM +P + + DEV +ALD
Sbjct: 146 QLSGGQQQRVAIARALAM---RPKVM-LFDEVTSALD 178
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 29.4 bits (66), Expect = 1.8
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGG++ VA++ V+AM +P L +LDE A LD
Sbjct: 138 LSGGEKKRVAIAGVIAM---EPQVL-VLDEPTAGLD 169
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 29.3 bits (66), Expect = 1.9
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230
G S G R VA+ A L P+ +LDE LD+ T+ + + +++ + I+
Sbjct: 135 GGFSTGMRQKVAI----ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 231 VS 232
S
Sbjct: 191 FS 192
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 29.3 bits (66), Expect = 2.0
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQ+ VAL+ LA+ +P L +LDE ALD
Sbjct: 136 QLSGGQKQRVALARALAV---EPQIL-LLDEPFGALD 168
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 29.2 bits (66), Expect = 2.0
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
+SGG+R V+++ LL+ P L ILDE + LD N+ L + + ++ +I++
Sbjct: 144 ISGGERRRVSIA---VQLLWDPKVL-ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILT 199
Query: 233 L 233
+
Sbjct: 200 I 200
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 29.4 bits (66), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
GELSGG + V L+ A AP+ ++DE +ALD
Sbjct: 163 GELSGGMQQRVGLARAFAT----EAPILLMDEPFSALD 196
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 29.0 bits (65), Expect = 2.1
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
LSGGQ+ VA++ +LA+ +P L I DE A LD + Q++ ++ + V
Sbjct: 176 GLSGGQKRRVAIAGILAI---QPEIL-IFDEPTAGLDPKGEHEMMQLILDAKANNKTVFV 231
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 29.2 bits (65), Expect = 2.2
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LSGGQ+ + ++ LA+ +P L ++DE +ALD + T I ++ K + IIV+
Sbjct: 149 LSGGQQQRLCIARALAV---EPEIL-LMDEPTSALDPASTARIEDLMTDLKKVTTIIIVT 204
Query: 233 LKEGMFSNANVIFRTKF 249
M A V T F
Sbjct: 205 --HNMHQAARVSDTTSF 219
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 28.9 bits (65), Expect = 2.3
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQ+ VA++ +AM +P + ILDE + LD
Sbjct: 141 LSGGQKQRVAIAGAVAM---RPK-IIILDEATSMLD 172
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 28.9 bits (65), Expect = 2.3
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQM---LKRHFKTSQ 227
ELSGG+R VA++ L +P+ L + DE LD ++ + I + L R TS
Sbjct: 140 SELSGGERQRVAIARALVN---QPS-LVLADEPTGNLDNNNAKIIFDLMLELNRELNTS- 194
Query: 228 FIIVS 232
F++V+
Sbjct: 195 FLVVT 199
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 28.9 bits (65), Expect = 2.3
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 151 DILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLS 210
+++D LE+ + ++ +LSGG+ VA+ A L + A Y DE + LD+
Sbjct: 122 ELVDQLELR----HVLDRNIDQLSGGELQRVAI----AAALARDADFYFFDEPSSYLDIK 173
Query: 211 HTQNIGQMLKRHFKTSQFIIV 231
N ++++ + +++V
Sbjct: 174 QRLNAARLIRELAEDDNYVLV 194
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 29.2 bits (66), Expect = 2.3
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 168 ESLGELSGGQRS--LVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI 215
E G LSGGQR L+A +LV KP L + DE +ALD + TQ I
Sbjct: 584 EGGGTLSGGQRQRLLIARALVR-----KPRIL-LFDEATSALD-NRTQAI 626
>gnl|CDD|217376 pfam03122, Herpes_MCP, Herpes virus major capsid protein. This
family represents the major capsid protein (MCP) of
herpes viruses. The capsid shell consists of 150 MCP
hexamers and 12 MCP pentamers. One pentamer is found at
each of the 12 apices of the icosahedral shell, and the
hexamers form the edges and 20 faces.
Length = 1352
Score = 29.5 bits (67), Expect = 2.3
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 186 VLAMLLFKPAPLYIL----DEVDAALDLSHTQ--NIGQMLKRHFKTSQFII 230
VL +LL K PL+IL D LS Q N+ KRH F +
Sbjct: 169 VLRVLLRKAPPLFILQTLEDPTYEERGLSRVQRANLVSSFKRHLLEDLFFL 219
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 29.2 bits (65), Expect = 2.6
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD-LSHTQNIGQMLK---RHFKTSQ 227
ELSGG R V L+ LA+ + ++DE +ALD L T+ +++K +H +T
Sbjct: 164 ELSGGMRQRVGLARALAI----NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 228 FIIVSLKEGM 237
FI L E M
Sbjct: 220 FISHDLDEAM 229
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 28.7 bits (65), Expect = 2.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYIL-DEVDAALDLSHTQNIGQMLKR 221
+LSGGQ+ VA++ L P IL DE A+LD + ++ + +LKR
Sbjct: 143 DQLSGGQQQRVAIARALM-----QQPKLILADEPVASLDPASSRQVMDLLKR 189
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 28.8 bits (64), Expect = 2.6
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230
LSGGQ VAL+ +L M +P L I DEV + LD + + +K+ + + I+
Sbjct: 137 LSGGQGQCVALAGILTM---EPECL-IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIV 190
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 29.1 bits (65), Expect = 2.8
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
+LSGG R V +++ L+ +PA L I DE ALD++ I Q++K
Sbjct: 168 QLSGGMRQRVMIAMALSC---RPAVL-IADEPTTALDVTIQAQILQLIK 212
>gnl|CDD|191464 pfam06166, DUF979, Protein of unknown function (DUF979). This
family consists of several putative bacterial membrane
proteins. The function of this family is unclear.
Length = 308
Score = 28.7 bits (65), Expect = 2.9
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 158 VNVAFGGLWKESLGELSGGQRSLVAL------SLVLAMLLFKPAPLYILDEVDAALD 208
V + L+ L L +LV L +LVLA+++ K P + E LD
Sbjct: 103 VTIIGALLFTN-LPLLDPKNGTLVGLGIGCVIALVLALIMTKAKPKQPVQEGRRLLD 158
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 28.8 bits (65), Expect = 3.0
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQ+ VA++ VLA+ +P + ILDE + LD
Sbjct: 141 LSGGQKQRVAIAGVLAL---QPDII-ILDEATSMLD 172
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 28.9 bits (65), Expect = 3.1
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
G LSGG++ VA+ LL P L ++DE AALD I L+R
Sbjct: 130 GRLSGGEKQRVAIG---RALLSSPR-LLLMDEPLAALDDPRKYEILPYLER 176
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 28.2 bits (64), Expect = 3.2
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK---RHFKTSQ 227
ELSGGQ+ VA++ LA P + + DE LD + + ++L+ + T+
Sbjct: 139 SELSGGQQQRVAIARALAN---DP-KIILADEPTGNLDSETGKEVMELLRELNKEAGTT- 193
Query: 228 FIIVS 232
++V+
Sbjct: 194 IVVVT 198
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 29.0 bits (65), Expect = 3.7
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 11/59 (18%)
Query: 156 LEVNVAF--GGLWKESLGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LE ++A GGL E +GE LSGGQ++ V+ LA ++ +Y+LD+ +ALD
Sbjct: 761 LEADLAQLGGGLETE-IGEKGVNLSGGQKARVS----LARAVYANRDVYLLDDPLSALD 814
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 28.1 bits (63), Expect = 3.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 172 ELSGG--QRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
+LSGG QR ++AL+L+L P I DE LD+
Sbjct: 125 QLSGGMLQRVMIALALLLE------PPFLIADEPTTDLDV 158
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 28.1 bits (63), Expect = 3.9
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 131 SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAML 190
S+F+ L + + +D L + G LS GQ+ L + ML
Sbjct: 111 SVFASLFARLR-----AEERRRIDELLATIGLGDERDRLAALLSHGQKQW----LEIGML 161
Query: 191 LFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
L + L +LDE A + + T+ ++LK
Sbjct: 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 27.8 bits (63), Expect = 4.0
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
LS G+R +V ++ LA + A L ILDE AAL + + + ++++R
Sbjct: 83 LSVGERQMVEIARALA----RNARLLILDEPTAALTPAEVERLFKVIRR 127
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 28.2 bits (63), Expect = 4.2
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
LSGG+R + AML+ + + +LDE +ALD++H ++ ++ R
Sbjct: 148 LSGGERQRAWI----AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 28.2 bits (63), Expect = 4.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
++SGGQ +A+ +LAM + +LDE A LD + + ++LK
Sbjct: 145 QMSGGQMRKIAIVSILAM----NPDIIVLDEPTAGLDPQSKRQVMRLLKS 190
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase;
Provisional.
Length = 353
Score = 28.2 bits (63), Expect = 4.3
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 19/85 (22%)
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
K+++D L +NV GG +L + + AM +FK EVD+ DL
Sbjct: 271 KEVIDSLHINVVVGG----KFSDLVNEEGGSDPYEVPKAMGIFK--------EVDSGCDL 318
Query: 210 SHT-------QNIGQMLKRHFKTSQ 227
+ +N LKR K
Sbjct: 319 TTDSIVDRVVKNRLAFLKRQAKKRA 343
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 28.3 bits (63), Expect = 4.6
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
LS GQ+ VA++ VL M +P L +LDE A LD I ++L K I+
Sbjct: 142 LSFGQKKRVAIAGVLVM---EPKVL-VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTII 196
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 28.6 bits (64), Expect = 4.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
E LSGGQR +A++ L+ P L I DE +ALD
Sbjct: 589 EKGANLSGGQRQRIAIA---RALVGNPRIL-IFDEATSALD 625
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 27.8 bits (62), Expect = 4.8
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYIL-DEVDAALD 208
LSGGQ+ VA++ LAM P IL DE +ALD
Sbjct: 145 LSGGQQQRVAIARALAM-----RPEVILFDEPTSALD 176
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 28.1 bits (63), Expect = 4.9
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAP-LYILDEVDAALDLSHTQNIGQMLKR 221
+LSGGQ V L+ LA P L ILDE + LDL + ++LK+
Sbjct: 150 PQLSGGQLQRVCLARALA-----VEPKLLILDEAVSNLDLVLQAGVIRLLKK 196
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 28.0 bits (63), Expect = 5.1
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYIL-DEVDAALDLSHTQNIGQMLKR 221
+LSGGQ+ VA++ LA P IL DE A+LD ++ + LKR
Sbjct: 145 QLSGGQQQRVAIARALA-----QQPDLILADEPIASLDPKTSKQVMDYLKR 190
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 27.9 bits (62), Expect = 5.5
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD----LSHTQNIGQMLKRHFKTSQ 227
ELSGG + V L+ LA + ++DE +ALD S + ++ KT
Sbjct: 129 ELSGGMQQRVGLARALAA----EPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184
Query: 228 FIIVSLKEGM 237
FI L E +
Sbjct: 185 FITHDLDEAI 194
>gnl|CDD|234115 TIGR03132, malonate_mdcB, triphosphoribosyl-dephospho-CoA synthase
MdcB. This protein acts in cofactor biosynthesis,
preparing the coenzyme A derivative that becomes
attached to the malonate decarboxylase acyl carrier
protein (or delta subunit). The closely related protein
CitG of citrate lyase produces the same molecule, but
the two families are nonetheless readily separated
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 272
Score = 27.7 bits (62), Expect = 5.8
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 103 LLKVIEELDEKKKIALREAWLKVNTDFGSIFSL-LLPGSQAKLS 145
L + + L + + A+ A VNT G+IF+L LL + AKL+
Sbjct: 69 LRERLRALGREAEAAMLAATGGVNTHRGAIFALGLLCAAAAKLA 112
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 27.8 bits (62), Expect = 5.9
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 168 ESLGELSGGQRSLVALS---LVLAMLL--FKPAPLYILDEVDAALDLSHTQNIGQMLKRH 222
E+ GE + G RSL +S LA+ F +YILDE +AAL S + +L+
Sbjct: 115 EADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDL 174
Query: 223 FKT-SQFIIVS 232
+ +Q II +
Sbjct: 175 ADSGAQIIIAT 185
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 28.0 bits (62), Expect = 6.0
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+LSGG + +A++ +A+ +P L +LDE +ALD + N+ + +
Sbjct: 137 QLSGGMQQRIAIARAIAI---EPDVL-LLDEPLSALDANIRANMREEIAA 182
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 27.7 bits (62), Expect = 6.5
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
ELSGGQ+ V ++ LA P PL ++DE ALD
Sbjct: 134 HELSGGQQQRVGVARALAA---DP-PLLLMDEPFGALD 167
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 26.9 bits (60), Expect = 6.5
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 199 ILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
ILDE L+ ++L + K Q +++S
Sbjct: 108 ILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLS 141
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 27.6 bits (62), Expect = 6.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNI 215
+ + EL+GG R V ++ LL +PA L +LDE LD + I
Sbjct: 128 DKVRELNGGHRRRVEIA---RALLHRPA-LLLLDEPTVGLDPASRAAI 171
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 27.3 bits (61), Expect = 6.8
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
LSGG++ VA++ L + P + +LDE +ALD+ + + + LK+
Sbjct: 130 LSGGEQQRVAIARALVV---NPK-ILLLDEPFSALDVRTKEKLREELKK 174
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 27.4 bits (61), Expect = 6.9
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230
GE S G + VA+ A L + +LDE + LD+ T+ + K +
Sbjct: 132 GEFSTGMKQKVAI----ARALVHDPSILVLDEPTSGLDIR-TRRKFHDFIKQLKNEGRAV 186
Query: 231 V 231
+
Sbjct: 187 I 187
>gnl|CDD|226974 COG4626, COG4626, Phage terminase-like protein, large subunit
[General function prediction only].
Length = 546
Score = 27.7 bits (62), Expect = 7.1
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 68 SVKVGAMVKAPLRTLLFIS----------MEAMTKKSIVESDRAK---LLKVIEELDEKK 114
S G + P +++I+ + + V + K VI ELDE+
Sbjct: 204 SEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKDPHFFPVIYELDEEG 263
Query: 115 KIALREAWLKVN 126
+ E W K N
Sbjct: 264 EHDDPENWAKAN 275
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 27.6 bits (62), Expect = 7.2
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+LSGGQ+ VAL+ L+ +P + +LDE +ALD
Sbjct: 136 QLSGGQQQRVALA---RALVPEP-KVLLLDEPLSALD 168
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 27.6 bits (61), Expect = 7.2
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 162 FGGLWKESLGELSGGQRSLVAL-------SLVLAMLLFKPAPLY-----ILDEVDAALDL 209
G + L ELS G R+ AL +VL L ++DE+D L
Sbjct: 251 HGNGGEIPLSELSDGPRTKFALVADIARRCVVLNPYLSDALAKLTPGIVLIDEIDLFLHP 310
Query: 210 SHTQNIGQMLKRHFKTSQFII 230
Q I Q L F QFI+
Sbjct: 311 KWQQQINQKLLSAFPEIQFIV 331
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 27.6 bits (62), Expect = 7.3
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 88 EAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFS 134
E MT V + KLL+ E++ E L E + +++ + S +S
Sbjct: 457 EWMTDNVTVVRENDKLLETDEKIQE-----LMERYKRISVNDTSRWS 498
>gnl|CDD|153344 cd07660, BAR_Arfaptin, The Bin/Amphiphysin/Rvs (BAR) domain of
Arfaptin. The BAR domain of Arfaptin-like proteins,
also called the Arfaptin domain, is a dimerization and
lipid binding module that can detect and drive membrane
curvature. Arfaptins are ubiquitously expressed proteins
implicated in mediating cross-talk between Rac, a member
of the Rho family GTPases, and Arf (ADP-ribosylation
factor) small GTPases. Arfaptins bind to GTP-bound Arf1,
Arf5, and Arf6, with strongest binding to GTP-Arf1.
Arfaptins also bind to Rac-GTP and Rac-GDP with similar
affinities. The Arfs are thought to bind to the same
surface as Rac, and their binding is mutually exclusive.
Mammals contain at least two isoforms of Arfaptin.
Arfaptin 1 has been shown to inhibit the activation of
Arf-dependent phospholipase D (PLD) and the secretion of
matrix metalloproteinase-9 (MMP-9), an enzyme implicated
in cancer invasiveness and metastasis. Arfaptin 2
regulates the aggregation of the protein huntingtin,
which is implicated in Huntington disease. Arfaptins are
single-domain proteins with a BAR-like structure. BAR
domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 201
Score = 27.3 bits (61), Expect = 7.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 1 MNPHEVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKV 41
E R++Q K++ +KL V K + EEN+ KV
Sbjct: 134 ARLEEAQRRFQAHKDKYEKLRNDVSVKLKFL---EENKVKV 171
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 27.4 bits (61), Expect = 8.0
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LS GQ+ VA++ VLAM P + +LDE A LD + + ++L R + +IV+
Sbjct: 139 LSYGQKKRVAIAGVLAM---DPD-VIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVA 194
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 27.2 bits (61), Expect = 8.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 166 WKESL-GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
W+ ELSGG + V L+ LA P + ++DE +ALD
Sbjct: 153 WEHKYPDELSGGMQQRVGLARALA---VDP-DILLMDEAFSALD 192
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 27.0 bits (61), Expect = 8.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
G LSGG++ ++A++ L +P L +LDE L + I + +K
Sbjct: 135 GTLSGGEQQMLAIARALMS---RPK-LLLLDEPSEGLAPKIVEEIFEAIKE 181
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 27.1 bits (61), Expect = 8.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 164 GLWKE-------SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LW E S LSGGQ+ + ++ LA+ KP L ++DE +ALD
Sbjct: 134 ALWDEVKDRLHKSALGLSGGQQQRLCIARALAV---KPEVL-LMDEPTSALD 181
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 27.1 bits (61), Expect = 9.7
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 131 SIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAML 190
S+F+ L +LS KD ++ + + G LS GQ+ L + ML
Sbjct: 107 SVFASLF----FRLSA-EEKDRIEEVLETIGLADEADRLAGLLSHGQKQW----LEIGML 157
Query: 191 LFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
L + L +LDE A + T+ ++LK
Sbjct: 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKS 188
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 27.1 bits (61), Expect = 9.8
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
G+LSGGQ+ +A++ L +P L +LDE + S ++IG++++R
Sbjct: 130 GDLSGGQQQQLAIARALVT---RPK-LLLLDEPTEGIQPSIIKDIGRVIRR 176
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 27.1 bits (60), Expect = 9.9
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
ELSGGQ VA++ V+A ++P L LDE A LD + + Q+ K + K +I+
Sbjct: 145 ELSGGQMRRVAIAGVMA---YEPEIL-CLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 27.0 bits (60), Expect = 10.0
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQ+ VA++ LAM +P + + DE +ALD
Sbjct: 151 AHLSGGQQQRVAIARALAM---EPEVM-LFDEPTSALD 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.363
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,119,393
Number of extensions: 1256874
Number of successful extensions: 1955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1854
Number of HSP's successfully gapped: 293
Length of query: 264
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 169
Effective length of database: 6,723,972
Effective search space: 1136351268
Effective search space used: 1136351268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)