RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17516
(264 letters)
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 117 bits (296), Expect = 6e-31
Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 21/273 (7%)
Query: 5 EVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLLFI-SMKKYLGS 63
+V + + + ++ V Q EE + K+ + K+ +++ + L +
Sbjct: 153 DVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKT 212
Query: 64 MSSFSVKVGAMVKAP--LRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREA 121
S ++V + ++++ K+L ++ +K+K +
Sbjct: 213 YKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKT 272
Query: 122 WLKVNTDFGSIFSLL---------LPGSQAKLSPPAGKDILD-GLEVNV-AFGGLWKESL 170
+ V+ +I+ L L G A L+ + + G++ + +K +
Sbjct: 273 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFK-DM 331
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF-KTSQFI 229
LSGG++++ AL+L+ A+ ++P+P ++LDEVDAALD+++ Q I ++RH QFI
Sbjct: 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 391
Query: 230 IVSLKEGMFSNANVIF--RTKFVDGNSNVTRTV 260
++SLK MF ++ + N ++ +
Sbjct: 392 VISLKNTMFEKSDALVGVYR---QQQENSSKII 421
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 107 bits (269), Expect = 4e-29
Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 110 LDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD-GLEVNVAFGGLWKE 168
++++KK + ++ +F IF+ L PG A+L +D GLE+ G +
Sbjct: 1 MEKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVK 60
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQF 228
+ +SGG+++L AL+ V A+ FKPAP Y+ DE+DA LD ++ + + ++K K SQF
Sbjct: 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQF 120
Query: 229 IIVSLKEGMFSNANVIF 245
I+++L++ M +NA+ I
Sbjct: 121 IVITLRDVMMANADKII 137
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 102 bits (257), Expect = 7e-26
Identities = 44/128 (34%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 107 IEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSP-PAGKDILD-GLEVNVAFGG 164
+E + R ++ +VN F SLL G + +L+ K ILD G E+++ G
Sbjct: 152 LESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPG 211
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK 224
+ L LSGG+++LV L+L+ A++ KP+P Y+LDEVD+ LD + + ++LK + K
Sbjct: 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK 271
Query: 225 TSQFIIVS 232
+QFI+++
Sbjct: 272 HTQFIVIT 279
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 62.0 bits (150), Expect = 2e-11
Identities = 42/213 (19%), Positives = 81/213 (38%), Gaps = 9/213 (4%)
Query: 53 LFISMKKYLGSMSSFSVKVGAMVKAPLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDE 112
I +L ++ ++ A++++ + K + LK E
Sbjct: 125 KLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTE 184
Query: 113 KKKIALREAWLKVNTDFGSIFS-----LLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWK 167
+ +++ S + ++ K S + + + + V + G +
Sbjct: 185 ELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKER 244
Query: 168 ESLGELSGGQRSLVALSLVLAM--LLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT 225
L LSGG+R + L+ LAM L L ILDE LD + + +++R+ K
Sbjct: 245 -PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 303
Query: 226 -SQFIIVSLKEGMFSNANVIFRTKFVDGNSNVT 257
Q I+VS E + A+ + R +G+S V
Sbjct: 304 IPQVILVSHDEELKDAADHVIRISLENGSSKVE 336
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 61.4 bits (149), Expect = 5e-11
Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 4/165 (2%)
Query: 97 ESDRAKLLKVIEELDE-KKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDG 155
E ++ KL K +E LD+ ++ + + + L + ++ P L
Sbjct: 204 EKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTK 263
Query: 156 LEVNVAFGGLWKESLGELSGGQRSLVALSLVLA---MLLFKPAPLYILDEVDAALDLSHT 212
++ LSGG++ VALSL LA L+ ILDE LD +
Sbjct: 264 DFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323
Query: 213 QNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVT 257
+ ++ ++ Q II++ + A+VI K S V
Sbjct: 324 AKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSKVK 368
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 56.2 bits (136), Expect = 3e-09
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 144 LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEV 203
L+P D++ L ++ + + + LSGG+ VA+ L L + PA +Y++DE
Sbjct: 443 LNPQFQTDVVKPLRID----DIIDQEVQHLSGGELQRVAIVLALGI----PADIYLIDEP 494
Query: 204 DAALDLSHTQNIGQMLKR---HFKTSQFII 230
A LD ++++R H K + FI+
Sbjct: 495 SAYLDSEQRIICSKVIRRFILHNKKTAFIV 524
Score = 45.8 bits (109), Expect = 8e-06
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+ K + +LSGG+ A+ + A +Y+ DE + LD+ N Q+++
Sbjct: 214 VLKRDIEKLSGGELQRFAIGMSCVQ----EADVYMFDEPSSYLDVKQRLNAAQIIRS 266
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 50.4 bits (121), Expect = 3e-07
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR---HFKTSQ 227
+LSGG+ VA++ L + A +Y+LDE A LD+ + + ++ + +
Sbjct: 470 EDLSGGELQRVAIAATLL----RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 228 FII 230
++
Sbjct: 526 LVV 528
Score = 45.4 bits (108), Expect = 1e-05
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+ L +LSGG+ VA+ A L + A Y DE + LD+ + ++++R
Sbjct: 221 VLDRELHQLSGGELQRVAI----AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 49.6 bits (119), Expect = 4e-07
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR---HFKTSQF 228
+LSGG+ + ++ LA K A LY+LD+ + LD+ + + +KR K F
Sbjct: 385 DLSGGELQKLYIAATLA----KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Query: 229 II 230
II
Sbjct: 441 II 442
Score = 46.6 bits (111), Expect = 3e-06
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
++ + L + LW + LSGG + ++ L A +YI D+ + LD+
Sbjct: 120 DEVKELLNMT----NLWNKDANILSGGGLQRLLVAASLLR----EADVYIFDQPSSYLDV 171
Query: 210 SHTQNIGQMLKRHFKTSQFIIVSLKEGM 237
N+ + ++ L +
Sbjct: 172 RERMNMAKAIRE-----------LLKNK 188
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 48.8 bits (117), Expect = 7e-07
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR---HFKTSQF 228
ELSGG+ VA++ L + A +Y+LDE A LD+ + + ++ + +
Sbjct: 401 ELSGGELQRVAIAATLL----RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Query: 229 II 230
++
Sbjct: 457 VV 458
Score = 41.9 bits (99), Expect = 1e-04
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
+ + + LSGG+ VA++ L A Y DE + LD+ N + ++R
Sbjct: 151 VLEREIQHLSGGELQRVAIAAALLR----NATFYFFDEPSSYLDIRQRLNAARAIRR 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 4e-06
Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 65/175 (37%)
Query: 53 LFISMKKYLGSMSSFSVKVGAMVK-APLR-TLLF-------IS--MEAMTKKSIVESDRA 101
++ + FS+ +V P+ T+ F I AM ++IV+ +
Sbjct: 1645 VWNRADNHFKDTYGFSIL--DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG-KL 1701
Query: 102 KLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSP-----PAGKDIL--- 153
K K+ +E++E S + LS PA +
Sbjct: 1702 KTEKIFKEINEH------------------STSYTFRSEKGLLSATQFTQPA---LTLME 1740
Query: 154 ---------DGLEV-NVAFGGLWKESLGELSGGQRSLVALSLVLAM-----LLFK 193
GL + F G SLGE + +L +L+ V+++ ++F
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGH---SLGEYA----ALASLADVMSIESLVEVVFY 1788
Score = 40.0 bits (93), Expect = 7e-04
Identities = 48/269 (17%), Positives = 88/269 (32%), Gaps = 106/269 (39%)
Query: 17 RDKLERTVDK---------KAQLSLRNEENQFKVGAMVKAPLKTL--LFISMKKYLGSMS 65
+++++ V+K + ++SL N V V P ++L L ++++K
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-V---VSGPPQSLYGLNLTLRK------ 395
Query: 66 SFSVKVGAMVKAPLRTLLFISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKV 125
KAP D+++ I + K K + R +L V
Sbjct: 396 ---------AKAP-----------------SGLDQSR----IPFSERKLKFSNR--FLPV 423
Query: 126 NTDFGSIFSLLLPGSQAKLSPPAGKDIL-DGLEVNVAFGGLWKESLG----ELSGGQ--R 178
+ F S LL PA I D ++ NV+F + + + G R
Sbjct: 424 ASPF---HSHLL--------VPASDLINKDLVKNNVSFNA---KDIQIPVYDTFDGSDLR 469
Query: 179 SL---VALSLVLAMLLFKPA---------PLYILDEVDAALDLSHTQNIGQMLKRHFKTS 226
L ++ +V ++ P +ILD +G + R
Sbjct: 470 VLSGSISERIV-DCIIRLPVKWETTTQFKATHILD-----FGPGGASGLGVLTHR----- 518
Query: 227 QFIIVSLKEGMFSNANVIFRTKFVDGNSN 255
K+G + VI +D N +
Sbjct: 519 ------NKDG--TGVRVIVAGT-LDINPD 538
Score = 29.2 bits (65), Expect = 1.7
Identities = 37/198 (18%), Positives = 64/198 (32%), Gaps = 65/198 (32%)
Query: 32 LRNEENQ----FKVGAMVKAPLKTLL----FISMKKYLG--------SMSSFSVKVGAMV 75
L N N + + + PL ++ ++ K LG + + +V
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 76 KAPLRTLLFISMEAMTKKSIVESDRAKLLKVIEEL--------DEKKKIALREAWLKVNT 127
A + I+ + +S S + K I L + +L + L+ +
Sbjct: 279 TA-----VAIAE-TDSWESFFVS----VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 128 DFG--------SIFSLLLPGSQAKL-----SPPAGKDILDGLEVN-----VAFGGLWKES 169
+ SI +L Q + PAGK + L VN V
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLV--------- 378
Query: 170 LGELSGGQRSLVALSLVL 187
+SG +SL L+L L
Sbjct: 379 ---VSGPPQSLYGLNLTL 393
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 42.7 bits (101), Expect = 5e-05
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF 223
+ + L +LS GQ LV SL LA +P + LDE +D + I + +K +
Sbjct: 120 EILRRKLYKLSAGQSVLVRTSLALAS---QP-EIVGLDEPFENVDAARRHVISRYIKEYG 175
Query: 224 KTSQFIIVS 232
K I+V+
Sbjct: 176 KE--GILVT 182
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 42.2 bits (100), Expect = 8e-05
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
LSGGQR L+ ++A + L +LDE +ALDL++ + +L
Sbjct: 125 EFTSLSGGQRQLI----LIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 44/294 (14%), Positives = 88/294 (29%), Gaps = 84/294 (28%)
Query: 3 PHEVTRKYQKLKEQRDKLERTVD----------------KKAQLSLRNEENQFKVGAMVK 46
P +TR Y EQRD+L ++A L LR +N G ++
Sbjct: 105 PSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VLG 160
Query: 47 APLKTLLFISM---KKYLGSMSS--FSVKVG-----AMVKAPLRTLLFISMEAMTKKSIV 96
+ KT + + + K M F + + V L+ LL+ +
Sbjct: 161 SG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ----IDPNWTS 215
Query: 97 ESDRAKLLKV-IEELDEKKK------------IALREAW----LK---------VNTDFG 130
SD + +K+ I + + + + L + T F
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 131 SIFSLLLPGSQAK---------LSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLV 181
+ L + L+P K +L ++ L +E L +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVL------TTNPR 328
Query: 182 ALSLVLAML-----LFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230
LS++ + + D++ ++ S ++ F + +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--RLSV 380
Score = 41.0 bits (95), Expect = 3e-04
Identities = 43/286 (15%), Positives = 82/286 (28%), Gaps = 88/286 (30%)
Query: 3 PHEVTRKYQKLKEQRDKLERTVDKKAQLSLRNEENQF---KVGAMVKAP-LKTLLFISMK 58
V+ + K E V K + LR F + + P + T ++I
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQ- 115
Query: 59 KYLGSMSSFSVKVGAMVKAPLRTLLFISMEAMTKKSIV-ESDRAKLLKVIEELDEKKKIA 117
R L+ + K ++ KL + + EL K +
Sbjct: 116 ---------------------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 118 LREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDIL-------DGLEVNVAFGGLWKESL 170
+ G + GS GK + ++ + F W
Sbjct: 155 I----------DG------VLGS--------GKTWVALDVCLSYKVQCKMDFKIFW---- 186
Query: 171 GELS-GGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQM-LKRHFKTSQF 228
L+ S + +L LL++ P + D + ++ + Q L+R K+ +
Sbjct: 187 --LNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 229 ----II---VSLKEGMFSNANVI--F----RTKFVDGNSNVTRTVN 261
++ V NA F + VT ++
Sbjct: 244 ENCLLVLLNV-------QNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 41.4 bits (98), Expect = 1e-04
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 169 SLGELSGGQRSLVALSLVLAMLLFKPAP---LYILDEVDAALDLSHTQNIGQMLKR 221
S +LSGG+ V L+ V+ + + P L +LDE +LD++ + ++L
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 40.7 bits (96), Expect = 2e-04
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 158 VNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQ 217
V + F LSGG++ VA++ V+ +P L ILDE LD ++ +
Sbjct: 124 VGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH---EPDIL-ILDEPLVGLDREGKTDLLR 179
Query: 218 MLKR 221
++++
Sbjct: 180 IVEK 183
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 40.6 bits (96), Expect = 2e-04
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
LS GQ+ VA++ VL M +P L ILDE A LD I ++L
Sbjct: 143 CLSFGQKKRVAIAGVLVM---EPKVL-ILDEPTAGLDPMGVSEIMKLLVE 188
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 37.0 bits (86), Expect = 0.001
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 140 SQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGG--QRSLVALSLVLAMLLFKPAPL 197
++ K S + + + + V + G + L LSGG +A L +++ L L
Sbjct: 26 TEGKYSEVVVRAEENKVRLFVVWEGK-ERPLTFLSGGERIALGLAFRLAMSLYLAGEISL 84
Query: 198 YILDEVDAALDLSHTQNIGQMLKRHFKT-SQFIIVSLKEGMFSNANVIFRTKFVDGNSNV 256
ILDE LD + + +++R+ K Q I+VS E + A+ + R +G+S V
Sbjct: 85 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKV 144
Query: 257 T 257
Sbjct: 145 E 145
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 37.6 bits (88), Expect = 0.002
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 164 GLW---KESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
G+ ++ +G LS G++ V + A L + ILDE A LD +++ +L
Sbjct: 150 GMSAKAQQYIGYLSTGEKQRVMI----ARALMGQPQVLILDEPAAGLDFIARESLLSILD 205
Query: 221 ---RHFKTSQFIIVS 232
+ T I V+
Sbjct: 206 SLSDSYPTLAMIYVT 220
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 36.4 bits (85), Expect = 0.005
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 24/85 (28%)
Query: 171 GE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT-QNIGQMLKRHFK- 224
GE LSGG++ VA+ A + K + +LDE +ALD + + I L +
Sbjct: 185 GERGLKLSGGEKQRVAI----ARTILKAPGIILLDEATSALD-TSNERAIQASLAKVCAN 239
Query: 225 -TSQFI------------IVSLKEG 236
T+ + I+ +K+G
Sbjct: 240 RTTIVVAHRLSTVVNADQILVIKDG 264
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 36.2 bits (84), Expect = 0.009
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
L+ + GG LS G + L+ LA + A + +LDE A LD Q
Sbjct: 143 GKLDFVLVDGG------CVLSHGHKQLMC----LARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 214 NIGQMLKRHFK 224
I + LK+ F
Sbjct: 193 IIRRTLKQAFA 203
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 35.0 bits (80), Expect = 0.025
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 150 KDILDGLEVNVAFGGLWKE----SLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDA 205
KD L G E + LSGG + +A LA + + A + +LDE
Sbjct: 529 KDKLIEF-------GFTDEMIAMPISALSGGWKMKLA----LARAVLRNADILLLDEPTN 577
Query: 206 ALDLSHTQNIGQMLKRHFKTSQFIIVS 232
LD + + L TS I +S
Sbjct: 578 HLDTVNVAWLVNYLNTCGITS--ITIS 602
Score = 33.1 bits (75), Expect = 0.10
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 170 LGELSGGQRSLVALSLVLAMLLFKPAPLYILDE 202
+ LSGGQ+ LVLA ++ L +LDE
Sbjct: 899 IRGLSGGQKV----KLVLAAGTWQRPHLIVLDE 927
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 33.2 bits (77), Expect = 0.058
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+SGGQR +A+ A + + +LDE A+LD
Sbjct: 140 ISGGQRQRLAI----ARAFLRNPKILMLDEATASLD 171
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 32.9 bits (76), Expect = 0.068
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
LSGG+R +A+ A L K + I DE ++LD + ++
Sbjct: 156 LSGGERQRIAI----ARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 33.3 bits (77), Expect = 0.073
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Query: 170 LGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+GE LSGGQR +A +A L + +P+ ILDE +ALD
Sbjct: 474 IGENGVLLSGGQRQRIA----IARALLRDSPILILDEATSALD 512
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 33.3 bits (77), Expect = 0.085
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Query: 170 LGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+GE LSGGQR VA +A L + AP+ ILDE +ALD
Sbjct: 474 IGENGTSLSGGQRQRVA----IARALLRDAPVLILDEATSALD 512
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 31.7 bits (73), Expect = 0.21
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQR +A+ A L + I DE +ALD
Sbjct: 146 LSGGQRQRIAI----ARALVNNPKILIFDEATSALD 177
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.27
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 22/48 (45%)
Query: 112 EKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVN 159
EK+ + +A LK L S A PA L +
Sbjct: 18 EKQALKKLQASLK----------LYADDS-A----PA-------LAIK 43
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 31.0 bits (71), Expect = 0.34
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
LSGG+R VAL+ L + +P L +LDE +A+DL
Sbjct: 125 ARLSGGERQRVALARALVI---QPRLL-LLDEPLSAVDL 159
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 31.0 bits (71), Expect = 0.45
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 10/44 (22%)
Query: 170 LGE----LSGGQRSLVALSLVLA-MLLFKPAPLYILDEVDAALD 208
+GE LSGGQ+ ++ +A + L P P+ ILDE +ALD
Sbjct: 471 VGERGVKLSGGQKQRLS----IARIFLNNP-PILILDEATSALD 509
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 30.6 bits (70), Expect = 0.55
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 154 DGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQ 213
+G + V GG SGGQ+ L +A L K + ILD+ +++D +
Sbjct: 467 EGYDSRVERGG------RNFSGGQKQ----RLSIARALVKKPKVLILDDCTSSVDPITEK 516
Query: 214 NIGQMLKRHFKTSQFIIVS 232
I LKR+ K I++
Sbjct: 517 RILDGLKRYTKGCTTFIIT 535
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 30.3 bits (69), Expect = 0.61
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
ELSGGQ+ VAL+ LA +P L + DE AA+D
Sbjct: 145 ELSGGQQQRVALARALA---PRPQVL-LFDEPFAAIDT 178
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 29.8 bits (68), Expect = 0.89
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 172 ELSGGQRSLVAL--SLVLAMLLFKPAPLYILDEVDAALDL 209
LSGG++ VAL +LV P L +LDE +ALD
Sbjct: 127 TLSGGEQQRVALARALV-----TNPKIL-LLDEPLSALDP 160
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 29.4 bits (67), Expect = 0.94
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 21/81 (25%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT------QNIGQMLK---RHF 223
LSGGQR+ ++ LA ++K A LY+LD LD T + +++ R
Sbjct: 131 LSGGQRARIS----LARAVYKDADLYLLDSPFGYLD-VLTEKEIFESCVCKLMANKTRIL 185
Query: 224 KTSQF-------IIVSLKEGM 237
TS+ I+ L EG
Sbjct: 186 VTSKMEHLKKADKILILHEGS 206
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.97
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 99 DRAKLLKVIEELDEKKKIALREAWLKVNTDF 129
++ K L+ ++ + + RE K ++
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEW 123
Score = 26.7 bits (58), Expect = 7.3
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 8 RKYQKLKEQRDK-----LERTVDK--KAQLSLRNEENQFK 40
Q+ +E+ K +R ++ K +++ R + F
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 29.6 bits (67), Expect = 1.0
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 21/81 (25%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT------QNIGQMLK---RHF 223
LSGGQR+ ++ LA ++K A LY+LD LD T + +++ R
Sbjct: 160 LSGGQRARIS----LARAVYKDADLYLLDSPFGYLD-VLTEKEIFESCVCKLMANKTRIL 214
Query: 224 KTSQF-------IIVSLKEGM 237
TS+ I+ L EG
Sbjct: 215 VTSKMEHLKKADKILILHEGS 235
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 29.1 bits (66), Expect = 1.5
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAP-LYILDEVDAALD 208
ELSGGQ+ AL+ LA P P L +LDE +ALD
Sbjct: 138 ELSGGQQQRAALARALA-----PDPELILLDEPFSALD 170
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 29.1 bits (66), Expect = 1.6
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 177 QRSLVALSLVLAML-----LFKPAPLYILDEVDAALDLSHTQNIGQMLK 220
R++ AL+L A L F P+ +LD+ A LD Q + +
Sbjct: 271 GRTV-ALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAA 318
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 28.3 bits (64), Expect = 2.0
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 12/42 (28%)
Query: 171 GELSGGQRSLVALSLVLAM----LLFKPAPLYILDEVDAALD 208
LSGGQ+ V+++ LAM LLF DE +ALD
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLF--------DEPTSALD 185
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 28.7 bits (65), Expect = 2.3
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 170 LGE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
+GE LSGGQ+ +A +A L K + +LDE +ALD
Sbjct: 477 VGEKGVLLSGGQKQRIA----IARALLKNPKILLLDEATSALD 515
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 28.3 bits (64), Expect = 2.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 12/42 (28%)
Query: 171 GELSGGQRSLVALSLVLAM----LLFKPAPLYILDEVDAALD 208
LSGGQ VA++ LAM +LF DE +ALD
Sbjct: 158 DSLSGGQAQRVAIARALAMEPKIMLF--------DEPTSALD 191
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 28.3 bits (64), Expect = 2.5
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQR VA LA L + L ILD +ALD
Sbjct: 157 LSGGQRQAVA----LARALIRKPRLLILDNATSALD 188
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 28.3 bits (64), Expect = 2.6
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 9/46 (19%)
Query: 171 GE----LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHT 212
GE LSGGQ+ V+ LA ++ A +Y+ D+ +A+D +H
Sbjct: 122 GEKGVNLSGGQKQRVS----LARAVYSNADIYLFDDPLSAVD-AHV 162
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 28.1 bits (63), Expect = 3.1
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKR 221
LSGGQ+ VA++ LA P L + D+ +ALD + T++I ++LK
Sbjct: 163 NLSGGQKQRVAIARALAS---NPKVL-LCDQATSALDPATTRSILELLKD 208
>4g9q_A 4-carboxymuconolactone decarboxylase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium; 1.77A {Sinorhizobium meliloti}
Length = 269
Score = 27.6 bits (61), Expect = 3.9
Identities = 11/105 (10%), Positives = 29/105 (27%), Gaps = 26/105 (24%)
Query: 85 ISMEAMTKKSIVESDRAKLLKVIEELDEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKL 144
++ T+ +S ++ + + + + V
Sbjct: 9 SGVDLGTENLYFQSMMTTSNAGAQQPNVEGRRFSPDQVRSVAPALEQYT----------- 57
Query: 145 SPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAM 189
+G +W+ L+ RSLV ++ ++A
Sbjct: 58 -------------QQRLYGDVWQR--PGLNRRDRSLVTIAALIAR 87
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 27.7 bits (62), Expect = 4.7
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 173 LSGGQRSLVALSLVLA-MLLFKPAPLYILDEVDAALD 208
LSGGQ+ +A +A L+ +P L +LDE +ALD
Sbjct: 1172 LSGGQKQRIA----IARALVRQPHIL-LLDEATSALD 1203
Score = 26.9 bits (60), Expect = 9.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 173 LSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALD 208
LSGGQ+ +A +A L + + +LDE +ALD
Sbjct: 527 LSGGQKQRIA----IARALVRNPKILLLDEATSALD 558
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase,
transferase; HET: SAH; 1.96A {Streptococcus mutans}
Length = 384
Score = 27.3 bits (61), Expect = 5.9
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 59 KYLGSMSSFSVKVGAMVKAPLRTLLFISMEAMTKKSIVESDRAK 102
YL F V VK+ L I +TKK+IV+ +
Sbjct: 85 NYLPLGCQFPVAKAKSVKSKLHNEPSIQG--ITKKAIVKKLQHY 126
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 26.9 bits (60), Expect = 6.9
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 14 KEQRDKLERTVDKKAQLSLRNEENQFKVGAMVKAPLKTLL 53
+++ D+L R + +K + R + + K+ L LL
Sbjct: 182 EQRADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLL 221
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Length = 385
Score = 26.9 bits (60), Expect = 7.6
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 59 KYLGSMSSFSVKVGAMVKAPLRTLLFISMEAMTKKSIVESDRAK 102
+Y+ + F + + +K+ L + + + KK+IVES +
Sbjct: 88 RYIPYGAQFPISKASSIKSKLYSTPDVQA--IVKKAIVESLKKS 129
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 26.3 bits (59), Expect = 9.5
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 164 GLW--KESLGELSGG--QRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
+ K+ LGELS G +R + L LL +Y+LD+ A+D + + +
Sbjct: 123 EVLDLKKKLGELSQGTIRR----VQLAST-LLVNA-EIYVLDDPVVAIDEDSKHKVLKSI 176
Query: 220 KRHFKTSQFIIVS 232
K +I+S
Sbjct: 177 LEILKEKGIVIIS 189
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 26.3 bits (59), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 186 VLAMLLFKPAPLYILDEVDAALD 208
+L +L+ +P +LDE D+ LD
Sbjct: 154 ILQLLVLEPT-YAVLDETDSGLD 175
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 26.4 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 186 VLAMLLFKPAPLYILDEVDAALD 208
+L M + +P L ILDE D+ LD
Sbjct: 175 ILQMAVLEPE-LCILDESDSGLD 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.363
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,717,131
Number of extensions: 214949
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 72
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)