RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17516
(264 letters)
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 99.8 bits (247), Expect = 1e-24
Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 12/158 (7%)
Query: 114 KKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILD----------GLEVNVAFG 163
+K + + V+ +I+ L + + G L G++ +
Sbjct: 264 RKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPP 323
Query: 164 GLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRH- 222
+ + LSGG++++ AL+L+ A+ ++P+P ++LDEVDAALD+++ Q I ++RH
Sbjct: 324 LKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR 383
Query: 223 FKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSNVTRTV 260
QFI++SLK MF ++ + + N ++ +
Sbjct: 384 NPDLQFIVISLKNTMFEKSDALVGV-YRQQQENSSKII 420
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 87.0 bits (214), Expect = 2e-20
Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Query: 122 WLKVNTDFGSIFSLLLPGSQAKLSPPAGKDIL-DGLEVNVAFGGLWKESLGELSGGQRSL 180
+ ++ +F IF+ L PG A+L +D GLE+ G + + +SGG+++L
Sbjct: 173 FEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKAL 232
Query: 181 VALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSN 240
AL+ V A+ FKPAP Y+ DE+DA LD ++ + + ++K K SQFI+++L++ M +N
Sbjct: 233 TALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMAN 292
Query: 241 ANVIFRTKFVDGNSNV 256
A+ I DG S V
Sbjct: 293 ADKIIGVSMRDGVSKV 308
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 62.5 bits (150), Expect = 7e-12
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 166 WKESLGELSGGQRSLVA--LSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHF 223
+ L LSGG+R + L +++ L L ILDE LD + + +++R+
Sbjct: 272 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 331
Query: 224 KT-SQFIIVSLKEGMFSNANVIFRTKFVDGNSNV 256
K Q I+VS E + A+ + R +G+S V
Sbjct: 332 KKIPQVILVSHDEELKDAADHVIRISLENGSSKV 365
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 61.6 bits (148), Expect = 9e-12
Identities = 36/121 (29%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 138 PGSQAKLSPPAGKDILD--GLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPA 195
G + +L+ + + G E+++ G + L LSGG+++LV L+L+ A++ KP+
Sbjct: 183 FGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPS 242
Query: 196 PLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVSLKEGMFSNANVIFRTKFVDGNSN 255
P Y+LDEVD+ LD + + ++LK + K +QFI+++ + + A+++ V+G S
Sbjct: 243 PFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302
Query: 256 V 256
+
Sbjct: 303 I 303
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 49.1 bits (117), Expect = 1e-07
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
LSGGQR +A+ A L + +P+ ILDE +ALD + I L K +++
Sbjct: 152 LLSGGQRQRIAI----ARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 207
Query: 232 SLKEGMFSNANVIF 245
+ + A+ I
Sbjct: 208 AHRLSTIEQADEIV 221
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 47.9 bits (114), Expect = 3e-07
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
+LSGGQ+ +++ A + P+ ILDE +ALDL I + L K +IV
Sbjct: 154 KLSGGQKQRLSI----ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIV 209
Query: 232 SLKEGMFSNANVIF 245
+ + ++A+ I
Sbjct: 210 AHRLSTITHADKIV 223
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 42.8 bits (99), Expect = 2e-05
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 177 QRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT-SQFIIVSLKE 235
+A L +++ L L ILDE LD + + +++R+ K Q I+VS E
Sbjct: 208 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 267
Query: 236 GMFSNANVIFRTKFVDGNSNV 256
+ A+ + R +G+S V
Sbjct: 268 ELKDAADHVIRISLENGSSKV 288
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 42.2 bits (99), Expect = 2e-05
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIV 231
LSGGQR +A+ A L + I DE +ALD I + + + K II+
Sbjct: 139 GLSGGQRQRIAI----ARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 194
Query: 232 SLKEGMFSNANVIF 245
+ + NA+ I
Sbjct: 195 AHRLSTVKNADRII 208
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 40.6 bits (95), Expect = 9e-05
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 168 ESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQ 227
E ++SGGQR +A +A + + +LDE A+LD + + L K
Sbjct: 135 ERGVKISGGQRQRLA----IARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRT 190
Query: 228 FIIVSLKEGMFSNANVIF 245
++++ + +A+ I+
Sbjct: 191 TLVIAHRLSTIVDADKIY 208
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 39.5 bits (92), Expect = 2e-04
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 165 LWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFK 224
+ E LSGGQR+ ++L+ + A LY+LD LD+ + + +
Sbjct: 151 VLGEGGVTLSGGQRARISLARAVYK----DADLYLLDSPFGYLDVFTEEQVFESCVCKLM 206
Query: 225 TSQFIIV 231
++ I+
Sbjct: 207 ANKTRIL 213
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 38.7 bits (90), Expect = 3e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230
+LSGGQ+ VA++ LA P P+ + D+ ALD + I Q+LK+ + +
Sbjct: 144 NQLSGGQQQRVAIARALAN---NP-PIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTV 199
Query: 231 V 231
V
Sbjct: 200 V 200
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 37.2 bits (86), Expect = 0.001
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 172 ELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQ--FI 229
+LSGGQR VAL+ L + ILD+ +ALD + + Q+L + +
Sbjct: 151 QLSGGQRQAVALARALIR----KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 206
Query: 230 IVSLKEGMFSNANVIF 245
+++ + A+ I
Sbjct: 207 LITQHLSLVEQADHIL 222
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 36.8 bits (85), Expect = 0.001
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 166 WKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKT 225
K+ LGELS G V L+ L + A +Y+LD+ A+D + + + K
Sbjct: 119 LKKKLGELSQGTIRRVQLASTLLV----NAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 174
Query: 226 SQFIIVS 232
+I+S
Sbjct: 175 KGIVIIS 181
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 35.6 bits (82), Expect = 0.003
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 10/133 (7%)
Query: 105 KVIEELDEKKKIALREAWLKVNTDFGSIFS------LLLPGSQAKLSPPAGKDILDGLEV 158
+ + L E + R + F + S + LP K + L
Sbjct: 67 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS 126
Query: 159 NVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQM 218
V G LSGGQ+ VA++ LA + + DE +ALD + T++I ++
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALAS----NPKVLLCDEATSALDPATTRSILEL 182
Query: 219 LKRHFKTSQFIIV 231
LK + I+
Sbjct: 183 LKDINRRLGLTIL 195
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 35.1 bits (81), Expect = 0.005
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 135 LLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKP 194
+ P K + + L +LSGGQR VA++ + + +P
Sbjct: 99 IAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV---EP 155
Query: 195 APLYILDEVDAALDLSHTQNIGQMLKR 221
+ ++DE + LD + +K+
Sbjct: 156 -DVLLMDEPLSNLDAKLRVAMRAEIKK 181
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 34.9 bits (80), Expect = 0.005
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDL 209
+D+ + K+ G LSGG++ ++A+ L L ++DE L
Sbjct: 117 RDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS----RPKLLMMDEPSLGLAP 172
Query: 210 SHTQNIGQMLKRHFKTSQFIIVS 232
+ +++++ + I++
Sbjct: 173 ILVSEVFEVIQKINQEGTTILLV 195
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 33.8 bits (77), Expect = 0.013
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
+ L+ GELSGGQ LV + L + ++DE A + +I +
Sbjct: 138 LKLSHLYDRKAGELSGGQMKLVEIGRALMT----NPKMIVMDEPIAGVAPGLAHDIFNHV 193
Query: 220 KR 221
Sbjct: 194 LE 195
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 33.8 bits (77), Expect = 0.014
Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 4/125 (3%)
Query: 111 DEKKKIALREAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDGLEVNVAFGGLWKESL 170
+ +K I+ + I L S +++++ G K+ +
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV 131
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230
S G + ++ L + P ILDE + LD+ + + + ++LK+ + I+
Sbjct: 132 STYSKGMVRKLLIARALMV---NPRLA-ILDEPTSGLDVLNAREVRKILKQASQEGLTIL 187
Query: 231 VSLKE 235
VS
Sbjct: 188 VSSHN 192
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 32.6 bits (74), Expect = 0.029
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 150 KDILDGLEVNVAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAP---LYILDEVDAA 206
++L+ + +A S +LSGG+ V L+ V+ + + P L +LDE +
Sbjct: 103 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 162
Query: 207 LDLSHTQNIGQMLKRHFKTSQFIIVS 232
LD++ + ++L + I++S
Sbjct: 163 LDVAQQSALDKILSALCQQGLAIVMS 188
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 32.2 bits (73), Expect = 0.041
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
+ L ELSGGQR VAL + KP ++++DE + LD + L
Sbjct: 127 LGLTELLNRKPRELSGGQRQRVALGRAIVR---KP-QVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 220 KRHFKTSQFIIV 231
K+ + +
Sbjct: 183 KKLQRQLGVTTI 194
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 30.2 bits (68), Expect = 0.19
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 171 GELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFII 230
LSGGQ+ V+++ LAM +P + + DE +ALD + +++++ + + ++
Sbjct: 148 VHLSGGQQQRVSIARALAM---EP-DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 203
Query: 231 V 231
V
Sbjct: 204 V 204
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.2 bits (60), Expect = 2.0
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 160 VAFGGLWKESLGELSGGQRSLVALSLVLAMLLFKPAPLYILDEVDAALDLSHTQNIGQML 219
+ L LSGGQR VA + L +++LDE + LD + + +
Sbjct: 118 LQLAHLLDRKPKALSGGQRQRVA----IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 220 KRHFKTSQFIIV 231
R K ++
Sbjct: 174 SRLHKRLGRTMI 185
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 25.8 bits (56), Expect = 4.6
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 190 LLFKPAPLYILDEVDAALDLSHTQNIGQMLKRHFKTSQFIIVS 232
L K +ILDE D L++ +++ ++L K + ++ S
Sbjct: 141 LNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFS 183
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 26.0 bits (57), Expect = 6.0
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 17/83 (20%)
Query: 120 EAWLKVNTDFGSIFSLLLPGSQAKLSPPAGKDILDGLE-------VNVAFGGL--WKESL 170
E W++ + P + A P GK +D V++A+ G+ W ++
Sbjct: 74 EQWVQDPVNTR-------PIAHAIWDPQFGKAAVDAFTQAGASNPVDIAYSGVYHWWYTI 126
Query: 171 GELSGGQ-RSLVALSLVLAMLLF 192
G + G L+LA L
Sbjct: 127 GMRTNGDLYQGAIFLLILASLAL 149
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 25.7 bits (56), Expect = 6.4
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 85 ISMEAMTKKSIVESDRAKLLKVIEELDE 112
+SM TK + KL+++I+ L++
Sbjct: 196 VSMIPSTKADMDAETAPKLMRLIDMLED 223
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.363
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 870,131
Number of extensions: 38376
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 30
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)