BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17517
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 173 bits (439), Expect = 4e-43, Method: Composition-based stats.
Identities = 79/88 (89%), Positives = 84/88 (95%)
Query: 76 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIHS
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHS 1146
Query: 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163
Y PAPFFVLDEIDAALDNTNIGKVA+YI
Sbjct: 1147 YKPAPFFVLDEIDAALDNTNIGKVANYI 1174
Score = 117 bits (293), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 1 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIH
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIH 1145
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus norvegicus
GN=Smc1a PE=1 SV=1
Length = 1233
Score = 173 bits (439), Expect = 4e-43, Method: Composition-based stats.
Identities = 79/88 (89%), Positives = 84/88 (95%)
Query: 76 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIHS
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHS 1146
Query: 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163
Y PAPFFVLDEIDAALDNTNIGKVA+YI
Sbjct: 1147 YKPAPFFVLDEIDAALDNTNIGKVANYI 1174
Score = 117 bits (293), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 1 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIH
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIH 1145
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 173 bits (439), Expect = 4e-43, Method: Composition-based stats.
Identities = 79/88 (89%), Positives = 84/88 (95%)
Query: 76 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIHS
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHS 1146
Query: 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163
Y PAPFFVLDEIDAALDNTNIGKVA+YI
Sbjct: 1147 YKPAPFFVLDEIDAALDNTNIGKVANYI 1174
Score = 117 bits (293), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 1 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIH
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIH 1145
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 173 bits (439), Expect = 4e-43, Method: Composition-based stats.
Identities = 79/88 (89%), Positives = 84/88 (95%)
Query: 76 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIHS
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHS 1146
Query: 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163
Y PAPFFVLDEIDAALDNTNIGKVA+YI
Sbjct: 1147 YKPAPFFVLDEIDAALDNTNIGKVANYI 1174
Score = 117 bits (293), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 1 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIH
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIH 1145
>sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus laevis
GN=smc1a PE=1 SV=1
Length = 1232
Score = 172 bits (436), Expect = 8e-43, Method: Composition-based stats.
Identities = 78/88 (88%), Positives = 84/88 (95%)
Query: 76 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIHS
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHS 1146
Query: 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163
Y P+PFFVLDEIDAALDNTNIGKVA+YI
Sbjct: 1147 YKPSPFFVLDEIDAALDNTNIGKVANYI 1174
Score = 117 bits (293), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 1 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
AL++N SAQAFLGPENPEEPYL G+NYNCVAPGKRF+PM NLSGGEKTVAALALLFAIH
Sbjct: 1087 ALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIH 1145
>sp|Q8NDV3|SMC1B_HUMAN Structural maintenance of chromosomes protein 1B OS=Homo sapiens
GN=SMC1B PE=1 SV=2
Length = 1235
Score = 164 bits (414), Expect = 3e-40, Method: Composition-based stats.
Identities = 72/87 (82%), Positives = 80/87 (91%)
Query: 77 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136
L +N SAQAFL PENPEEPYL+G++YNCVAPGKRF PM NLSGGEK VAALALLFA+HS+
Sbjct: 1084 LCRNNSAQAFLSPENPEEPYLEGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAVHSF 1143
Query: 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163
PAPFFVLDE+DAALDNTNIGKV+SYI
Sbjct: 1144 RPAPFFVLDEVDAALDNTNIGKVSSYI 1170
Score = 109 bits (272), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/58 (81%), Positives = 52/58 (89%)
Query: 2 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
L +N SAQAFL PENPEEPYL+G++YNCVAPGKRF PM NLSGGEK VAALALLFA+H
Sbjct: 1084 LCRNNSAQAFLSPENPEEPYLEGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAVH 1141
>sp|Q920F6|SMC1B_MOUSE Structural maintenance of chromosomes protein 1B OS=Mus musculus
GN=Smc1b PE=1 SV=1
Length = 1248
Score = 163 bits (412), Expect = 5e-40, Method: Composition-based stats.
Identities = 72/87 (82%), Positives = 79/87 (90%)
Query: 77 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136
L +N SAQAFL PENPEEPYL G++YNCVAPGKRF PM NLSGGEK VAALALLFA+HS+
Sbjct: 1083 LCRNNSAQAFLSPENPEEPYLDGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAVHSF 1142
Query: 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163
PAPFFVLDE+DAALDNTNIGKV+SYI
Sbjct: 1143 RPAPFFVLDEVDAALDNTNIGKVSSYI 1169
Score = 108 bits (269), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/58 (81%), Positives = 51/58 (87%)
Query: 2 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
L +N SAQAFL PENPEEPYL G++YNCVAPGKRF PM NLSGGEK VAALALLFA+H
Sbjct: 1083 LCRNNSAQAFLSPENPEEPYLDGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAVH 1140
>sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1 OS=Arabidopsis
thaliana GN=SMC1 PE=2 SV=2
Length = 1218
Score = 115 bits (289), Expect = 9e-26, Method: Composition-based stats.
Identities = 50/79 (63%), Positives = 63/79 (79%)
Query: 85 AFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144
A+L EN ++P+L G+ Y + P KRF+ M LSGGEKTVAALALLF+IHSY P+PFF+L
Sbjct: 1077 AYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFIL 1136
Query: 145 DEIDAALDNTNIGKVASYI 163
DE+DAALDN N+ KVA +I
Sbjct: 1137 DEVDAALDNLNVAKVAKFI 1155
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 38/50 (76%)
Query: 10 AFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
A+L EN ++P+L G+ Y + P KRF+ M LSGGEKTVAALALLF+IH
Sbjct: 1077 AYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTVAALALLFSIH 1126
>sp|O94383|SMC1_SCHPO Structural maintenance of chromosomes protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm1 PE=1 SV=2
Length = 1228
Score = 114 bits (284), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/79 (64%), Positives = 65/79 (82%)
Query: 85 AFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144
A+L ++ +EPYL G+ ++ + P KRF+ M LSGGEKT+AALALLFAIHSY P+PFFVL
Sbjct: 1100 AYLTLDDLDEPYLGGIKFHAMPPMKRFRDMDQLSGGEKTMAALALLFAIHSYQPSPFFVL 1159
Query: 145 DEIDAALDNTNIGKVASYI 163
DEIDAALD TN+ K+A+YI
Sbjct: 1160 DEIDAALDQTNVTKIANYI 1178
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 39/50 (78%)
Query: 10 AFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
A+L ++ +EPYL G+ ++ + P KRF+ M LSGGEKT+AALALLFAIH
Sbjct: 1100 AYLTLDDLDEPYLGGIKFHAMPPMKRFRDMDQLSGGEKTMAALALLFAIH 1149
>sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1 SV=1
Length = 1225
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/81 (60%), Positives = 62/81 (76%)
Query: 83 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142
A L E+ +EP+ G+ Y+ P KRF+ M LSGGEKTVAALALLFAI+SY P+PFF
Sbjct: 1095 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFF 1154
Query: 143 VLDEIDAALDNTNIGKVASYI 163
VLDE+DAALD TN+ ++A+YI
Sbjct: 1155 VLDEVDAALDITNVQRIAAYI 1175
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 36/52 (69%)
Query: 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
A L E+ +EP+ G+ Y+ P KRF+ M LSGGEKTVAALALLFAI+
Sbjct: 1095 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAIN 1146
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1 SV=1
Length = 1418
Score = 87.4 bits (215), Expect = 4e-17, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 55/70 (78%)
Query: 94 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153
+P+ +GV ++ + P K ++ +TNLSGGEKT+++LAL+FA+H Y P P +V+DEIDAALD
Sbjct: 1300 DPFSEGVTFSVMPPKKSWRNITNLSGGEKTLSSLALVFALHKYKPTPLYVMDEIDAALDF 1359
Query: 154 TNIGKVASYI 163
N+ VA+YI
Sbjct: 1360 RNVSIVANYI 1369
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 35/42 (83%)
Query: 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60
+P+ +GV ++ + P K ++ +TNLSGGEKT+++LAL+FA+H+
Sbjct: 1300 DPFSEGVTFSVMPPKKSWRNITNLSGGEKTLSSLALVFALHK 1341
>sp|P41004|SMC4_SCHPO Structural maintenance of chromosomes protein 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut3 PE=1 SV=2
Length = 1324
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 94 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153
+P+ +GV ++ + P K ++ ++NLSGGEKT+++LAL+FA+H+Y P P +V+DEIDAALD
Sbjct: 1207 DPFSEGVLFSVMPPKKSWKNISNLSGGEKTLSSLALVFALHNYKPTPLYVMDEIDAALDF 1266
Query: 154 TNIGKVASYI 163
N+ VA+YI
Sbjct: 1267 KNVSIVANYI 1276
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 34/41 (82%)
Query: 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
+P+ +GV ++ + P K ++ ++NLSGGEKT+++LAL+FA+H
Sbjct: 1207 DPFSEGVLFSVMPPKKSWKNISNLSGGEKTLSSLALVFALH 1247
>sp|Q54LV0|SMC4_DICDI Structural maintenance of chromosomes protein 4 OS=Dictyostelium
discoideum GN=smc4 PE=3 SV=1
Length = 1415
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 55/71 (77%)
Query: 93 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152
E+P+ +G++++ P K ++ ++NLSGGEKT+++LAL+FA+H Y P +V+DEIDAALD
Sbjct: 1266 EDPFQEGISFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPNALYVMDEIDAALD 1325
Query: 153 NTNIGKVASYI 163
N+ +A+YI
Sbjct: 1326 FKNVSIIANYI 1336
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 35/42 (83%)
Query: 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
E+P+ +G++++ P K ++ ++NLSGGEKT+++LAL+FA+H
Sbjct: 1266 EDPFQEGISFSVRPPKKSWKNISNLSGGEKTLSSLALVFALH 1307
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 77 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136
L+ AQ FL +NPE+P+ GV GK Q + +SGGEKT+AAL+L+FA+ Y
Sbjct: 1020 LSPGGKAQMFL--DNPEDPFSGGVQLTVKPRGKDVQYLEAMSGGEKTLAALSLIFALQEY 1077
Query: 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163
P+PF+ DE+DA LD N KV I
Sbjct: 1078 KPSPFYYFDEVDAHLDEVNAKKVGELI 1104
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
L+ AQ FL +NPE+P+ GV GK Q + +SGGEKT+AAL+L+FA+
Sbjct: 1020 LSPGGKAQMFL--DNPEDPFSGGVQLTVKPRGKDVQYLEAMSGGEKTLAALSLIFALQ 1075
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 94 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153
+P+ +GV ++ P K ++ + NLSGGEKT+++LAL+FA+H Y P P +V+DEIDAALD
Sbjct: 1119 DPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDF 1178
Query: 154 TNIGKVASYI 163
N+ V Y+
Sbjct: 1179 KNVSIVGHYV 1188
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
+P+ +GV ++ P K ++ + NLSGGEKT+++LAL+FA+H
Sbjct: 1119 DPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALH 1159
>sp|Q9ERA5|SMC4_MICAR Structural maintenance of chromosomes protein 4 (Fragment)
OS=Microtus arvalis GN=SMC4 PE=2 SV=1
Length = 1243
Score = 79.7 bits (195), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 94 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153
+P+ +G+ ++ P K ++ + NLSGGEKT+++LAL+FA+H Y P P + +DEIDAALD
Sbjct: 1123 DPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF 1182
Query: 154 TNIGKVASYI 163
N+ VA YI
Sbjct: 1183 KNVSIVAFYI 1192
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALA 78
+P+ +G+ ++ P K ++ + NLSGGEKT+++LAL+FA+H ++++ +
Sbjct: 1123 DPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF 1182
Query: 79 QNQSAQAF 86
+N S AF
Sbjct: 1183 KNVSIVAF 1190
>sp|Q8CG47|SMC4_MOUSE Structural maintenance of chromosomes protein 4 OS=Mus musculus
GN=Smc4 PE=1 SV=1
Length = 1286
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 94 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153
+P+ +G+ ++ P K ++ + NLSGGEKT+++LAL+FA+H Y P P + +DEIDAALD
Sbjct: 1166 DPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF 1225
Query: 154 TNIGKVASYI 163
N+ VA YI
Sbjct: 1226 KNVSIVAFYI 1235
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALA 78
+P+ +G+ ++ P K ++ + NLSGGEKT+++LAL+FA+H ++++ +
Sbjct: 1166 DPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF 1225
Query: 79 QNQSAQAF 86
+N S AF
Sbjct: 1226 KNVSIVAF 1233
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 94 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153
+P+ +G+ ++ P K ++ + NLSGGEKT+++LAL+FA+H Y P P + +DEIDAALD
Sbjct: 1162 DPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF 1221
Query: 154 TNIGKVASYI 163
N+ VA YI
Sbjct: 1222 KNVSIVAFYI 1231
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALA 78
+P+ +G+ ++ P K ++ + NLSGGEKT+++LAL+FA+H ++++ +
Sbjct: 1162 DPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF 1221
Query: 79 QNQSAQAF 86
+N S AF
Sbjct: 1222 KNVSIVAF 1229
>sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of chromosomes protein 4 OS=Homo sapiens
GN=SMC4 PE=1 SV=2
Length = 1288
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 94 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153
+P+ +G+ ++ P K ++ + NLSGGEKT+++LAL+FA+H Y P P + +DEIDAALD
Sbjct: 1168 DPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF 1227
Query: 154 TNIGKVASYI 163
N+ VA YI
Sbjct: 1228 KNVSIVAFYI 1237
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALA 78
+P+ +G+ ++ P K ++ + NLSGGEKT+++LAL+FA+H ++++ +
Sbjct: 1168 DPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDF 1227
Query: 79 QNQSAQAF 86
+N S AF
Sbjct: 1228 KNVSIVAF 1235
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 77 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136
L+ SA+ L ENPE+P+ G+ GK + + +SGGEK + ALA +FAI +
Sbjct: 1031 LSPGGSARLIL--ENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKF 1088
Query: 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163
PAPF++ DEIDA LD+ N+ +VA I
Sbjct: 1089 KPAPFYLFDEIDAHLDDANVKRVADLI 1115
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 2 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60
L+ SA+ L ENPE+P+ G+ GK + + +SGGEK + ALA +FAI +
Sbjct: 1031 LSPGGSARLIL--ENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQK 1087
>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4 OS=Caenorhabditis
elegans GN=smc-4 PE=1 SV=1
Length = 1549
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 19/114 (16%)
Query: 69 LEDLRSMALAQNQSAQAFLGPE-------------------NPEEPYLQGVNYNCVAPGK 109
L+ ++ M L + SA F+G + ++P+ QG+++ K
Sbjct: 1211 LQRIKQMRLEEFHSAFEFIGKHLVAVFKMLTDGGDAKLEYIDKDDPFRQGISFMVRPAKK 1270
Query: 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
++ + LSGGEKT+++LAL+FA+H + P PF+V+DEIDAALD N+ +A Y+
Sbjct: 1271 AWKQIQFLSGGEKTLSSLALIFALHMFRPTPFYVMDEIDAALDYRNVSIIAQYV 1324
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 16 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
+ ++P+ QG+++ K ++ + LSGGEKT+++LAL+FA+H
Sbjct: 1252 DKDDPFRQGISFMVRPAKKAWKQIQFLSGGEKTLSSLALIFALH 1295
>sp|P48996|DPY27_CAEEL Chromosome condensation protein dpy-27 OS=Caenorhabditis elegans
GN=dpy-27 PE=1 SV=1
Length = 1469
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 49/70 (70%)
Query: 94 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153
+P+ G+ ++ K ++ + NLSGGEKT+A+L +FA+H Y P P +V+DEIDAALD
Sbjct: 1222 DPFDGGIKFSVRPAKKSWKLIENLSGGEKTLASLCFVFAMHHYRPTPLYVMDEIDAALDL 1281
Query: 154 TNIGKVASYI 163
N+ +A+YI
Sbjct: 1282 NNVSLIANYI 1291
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59
+P+ G+ ++ K ++ + NLSGGEKT+A+L +FA+H
Sbjct: 1222 DPFDGGIKFSVRPAKKSWKLIENLSGGEKTLASLCFVFAMH 1262
>sp|Q5N0D2|SMC_SYNP6 Chromosome partition protein Smc OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=smc PE=3 SV=2
Length = 1195
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 90 ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA 149
+NPE+P+ G+N GK + + ++SGGEK++ AL+ +FA+ Y P+PF+ LDE+D+
Sbjct: 1078 DNPEDPFSSGLNLIAHPKGKPVRRLASMSGGEKSLTALSFIFALQRYRPSPFYALDEVDS 1137
Query: 150 ALDNTNIGKVASYI 163
LD N+ ++A I
Sbjct: 1138 FLDGANVERLARVI 1151
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 15 ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60
+NPE+P+ G+N GK + + ++SGGEK++ AL+ +FA+ R
Sbjct: 1078 DNPEDPFSSGLNLIAHPKGKPVRRLASMSGGEKSLTALSFIFALQR 1123
>sp|Q7ZAK1|SMC_THEEB Chromosome partition protein Smc OS=Thermosynechococcus elongatus
(strain BP-1) GN=smc PE=3 SV=1
Length = 1168
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 86 FLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLD 145
+L E+PE+P+ G+N GK Q + ++SGGEK++ AL+ +FA+ Y P+PF+ D
Sbjct: 1044 YLQLESPEDPFAGGLNLVAHPKGKPVQRLASMSGGEKSLTALSFIFALQRYRPSPFYAFD 1103
Query: 146 EIDAALDNTNIGKVASYI 163
E+D LD N+ ++A I
Sbjct: 1104 EVDMFLDGANVERLAKMI 1121
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 11 FLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60
+L E+PE+P+ G+N GK Q + ++SGGEK++ AL+ +FA+ R
Sbjct: 1044 YLQLESPEDPFAGGLNLVAHPKGKPVQRLASMSGGEKSLTALSFIFALQR 1093
>sp|Q59037|SMC_METJA Chromosome partition protein Smc OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=smc PE=3 SV=2
Length = 1169
Score = 73.2 bits (178), Expect = 8e-13, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 87 LGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE 146
L EN + P+ G+ + GK+ + +SGGEK++ ALA LFAI +P+PF+VLDE
Sbjct: 1051 LSLENEKNPFEGGILIDASPRGKKLLSLDAMSGGEKSLTALAFLFAIQRLNPSPFYVLDE 1110
Query: 147 IDAALDNTNIGKVASYI 163
+DAALD N+ +A I
Sbjct: 1111 VDAALDVKNVSLIADMI 1127
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 12 LGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
L EN + P+ G+ + GK+ + +SGGEK++ ALA LFAI R+
Sbjct: 1051 LSLENEKNPFEGGILIDASPRGKKLLSLDAMSGGEKSLTALAFLFAIQRL 1100
>sp|B8CW13|SMC_HALOH Chromosome partition protein Smc OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=smc PE=3 SV=1
Length = 1185
Score = 72.8 bits (177), Expect = 8e-13, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 50/81 (61%)
Query: 83 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142
QA L PE GV PGK+ + ++ +SGGE+ + A+AL+FA +P+PF+
Sbjct: 1057 GQASLKLTEPENLLETGVEIVAQPPGKQLKKLSLMSGGERALTAIALVFAFLKVNPSPFY 1116
Query: 143 VLDEIDAALDNTNIGKVASYI 163
+LDEIDA LD+ N+ + A YI
Sbjct: 1117 ILDEIDAPLDDANVTRFARYI 1137
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
QA L PE GV PGK+ + ++ +SGGE+ + A+AL+FA ++
Sbjct: 1057 GQASLKLTEPENLLETGVEIVAQPPGKQLKKLSLMSGGERALTAIALVFAFLKV 1110
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc PE=3
SV=1
Length = 1199
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 87 LGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE 146
L EN E+P+ G+ + K+ Q + +SGGEK++ ALA LFAI +P+PF+VLDE
Sbjct: 1081 LSLENEEDPFSGGLLIDASPMNKQLQNLDVMSGGEKSLTALAFLFAIQRLNPSPFYVLDE 1140
Query: 147 IDAALDNTNIGKVASYI 163
+DAALD N + I
Sbjct: 1141 VDAALDTKNASLIGDMI 1157
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 12 LGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
L EN E+P+ G+ + K+ Q + +SGGEK++ ALA LFAI R+
Sbjct: 1081 LSLENEEDPFSGGLLIDASPMNKQLQNLDVMSGGEKSLTALAFLFAIQRL 1130
>sp|Q88WJ9|SMC_LACPL Chromosome partition protein Smc OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=smc PE=3 SV=1
Length = 1185
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 91 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA 150
+PE GV+ PGK+FQ ++ LSGGE+ + A+ LLFAI + P PF +LDE +AA
Sbjct: 1062 DPEHLLTSGVDIMAQPPGKKFQRLSLLSGGERALTAITLLFAILAVRPVPFSILDEAEAA 1121
Query: 151 LDNTNIGKVASYI 163
LD+ N+ + + Y+
Sbjct: 1122 LDDANVDRFSQYL 1134
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 16 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
+PE GV+ PGK+FQ ++ LSGGE+ + A+ LLFAI
Sbjct: 1062 DPEHLLTSGVDIMAQPPGKKFQRLSLLSGGERALTAITLLFAI 1104
>sp|P73340|SMC_SYNY3 Chromosome partition protein Smc OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=smc PE=3 SV=1
Length = 1200
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 11/126 (8%)
Query: 45 GEKTVAALALLFAIHRIATIRSLGLEDLRS-------MALAQNQSAQAFLGPENPEEPYL 97
GE+T LL I T+R +D + A+ +L ++ E+P+
Sbjct: 1036 GERT----ELLLRIENFTTLRRRSFQDAFDAVNKNFQIIFAELSDGDGYLQLDDAEDPFN 1091
Query: 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIG 157
G+N GK + ++++SGGEK++ AL+ +FA+ Y P+PF+ DE+D LD N+
Sbjct: 1092 GGLNLVAHPKGKPVRRLSSMSGGEKSLTALSFIFALQRYRPSPFYGFDEVDMFLDGANVE 1151
Query: 158 KVASYI 163
K++ +
Sbjct: 1152 KLSKMV 1157
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 11 FLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60
+L ++ E+P+ G+N GK + ++++SGGEK++ AL+ +FA+ R
Sbjct: 1080 YLQLDDAEDPFNGGLNLVAHPKGKPVRRLSSMSGGEKSLTALSFIFALQR 1129
>sp|Q5H054|SMC_XANOR Chromosome partition protein Smc OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=smc PE=3 SV=2
Length = 1167
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158
GV PGKR ++ LSGGEK + A+AL+FAI +PAPF +LDE+DA LD N+G+
Sbjct: 1050 GVTIMARPPGKRVSSISLLSGGEKAMTAVALVFAIFQLNPAPFCLLDEVDAPLDEANVGR 1109
Query: 159 VASYI 163
+A+ +
Sbjct: 1110 LANMV 1114
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
GV PGKR ++ LSGGEK + A+AL+FAI ++
Sbjct: 1050 GVTIMARPPGKRVSSISLLSGGEKAMTAVALVFAIFQL 1087
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 91 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA 150
+P + GV PGK+ Q + LSGGE+ + A+ALLF+I P PF VLDE++AA
Sbjct: 1063 DPNDLLHSGVEIIAQPPGKKLQNLNLLSGGERALTAIALLFSILKVRPVPFCVLDEVEAA 1122
Query: 151 LDNTNIGKVASYI 163
LD N+ + A Y+
Sbjct: 1123 LDEANVFRFAQYL 1135
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 16 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATI 64
+P + GV PGK+ Q + LSGGE+ + A+ALLF+I ++ +
Sbjct: 1063 DPNDLLHSGVEIIAQPPGKKLQNLNLLSGGERALTAIALLFSILKVRPV 1111
>sp|Q604U6|SMC_METCA Chromosome partition protein Smc OS=Methylococcus capsulatus (strain
ATCC 33009 / NCIMB 11132 / Bath) GN=smc PE=3 SV=2
Length = 1169
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158
GV+ PGKR + LSGGEK + A AL+FAI +PAPF +LDE+DA LD+ N+G+
Sbjct: 1053 GVSVMAQPPGKRNSSIHLLSGGEKALTAAALVFAIFELNPAPFCLLDEVDAPLDDANVGR 1112
Query: 159 VASYI 163
+ +
Sbjct: 1113 FSQLV 1117
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
GV+ PGKR + LSGGEK + A AL+FAI
Sbjct: 1053 GVSVMAQPPGKRNSSIHLLSGGEKALTAAALVFAI 1087
>sp|Q1INB1|SMC_KORVE Chromosome partition protein Smc OS=Koribacter versatilis (strain
Ellin345) GN=smc PE=3 SV=1
Length = 1308
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158
G++ PGK+ Q + LSGGEKT+ A +LL I Y P+PF +LDE+DA LD TN+ +
Sbjct: 1192 GIDVIASPPGKKLQNVLLLSGGEKTLTAFSLLVGIFQYAPSPFCILDEVDAPLDETNVAR 1251
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
G++ PGK+ Q + LSGGEKT+ A +LL I
Sbjct: 1192 GIDVIASPPGKKLQNVLLLSGGEKTLTAFSLLVGI 1226
>sp|A3PMS2|SMC_RHOS1 Chromosome partition protein Smc OS=Rhodobacter sphaeroides (strain
ATCC 17029 / ATH 2.4.9) GN=smc PE=3 SV=2
Length = 1151
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 93 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152
++P G+ C PGK+ ++ LSGGE+T+ ALAL+FA+ +PAP VLDE+DA LD
Sbjct: 1028 DDPLEAGLEIMCQPPGKKLSTLSLLSGGEQTLTALALIFAVFLANPAPICVLDEVDAPLD 1087
Query: 153 NTNIGK 158
+ N+ +
Sbjct: 1088 DANVTR 1093
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
++P G+ C PGK+ ++ LSGGE+T+ ALAL+FA+
Sbjct: 1028 DDPLEAGLEIMCQPPGKKLSTLSLLSGGEQTLTALALIFAV 1068
>sp|Q7NG51|SMC_GLOVI Chromosome partition protein Smc OS=Gloeobacter violaceus (strain PCC
7421) GN=smc PE=3 SV=1
Length = 1165
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 77 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136
A+ L E+P+ P+ G+ GK+ + + +SGGEK++ AL+ +FA+ Y
Sbjct: 1031 FAELSDGDGHLALEDPDNPFAGGLTLVAHPRGKQVRRLEAMSGGEKSLTALSFIFALQRY 1090
Query: 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163
P+PF+ DE+D LD N+ ++A +
Sbjct: 1091 RPSPFYAFDEVDMFLDGANVERLAKMV 1117
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 2 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60
A+ L E+P+ P+ G+ GK+ + + +SGGEK++ AL+ +FA+ R
Sbjct: 1031 FAELSDGDGHLALEDPDNPFAGGLTLVAHPRGKQVRRLEAMSGGEKSLTALSFIFALQR 1089
>sp|Q24U48|SMC_DESHY Chromosome partition protein Smc OS=Desulfitobacterium hafniense
(strain Y51) GN=smc PE=3 SV=1
Length = 1198
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158
GV PGK+ Q ++ LSGGE+ + A+ LLFA+ P+PF VLDEI+A+LD+ N+ +
Sbjct: 1081 GVEIIAQPPGKKPQLLSLLSGGERALTAIGLLFALLKVKPSPFCVLDEIEASLDDANVSR 1140
Query: 159 VASYI 163
A YI
Sbjct: 1141 FAQYI 1145
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
GV PGK+ Q ++ LSGGE+ + A+ LLFA+ ++
Sbjct: 1081 GVEIIAQPPGKKPQLLSLLSGGERALTAIGLLFALLKV 1118
>sp|P15016|YAT3_RHORU Uncharacterized protein in ATPase CF(0) subunits 3'region
(Fragment) OS=Rhodospirillum rubrum PE=4 SV=1
Length = 173
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 73 RSMALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132
R++ L +A L ++P G+ PGKR Q + LSGGE+ + A ALLFA
Sbjct: 21 RTLFLKLFGGGRAHLTLIESDDPLEAGLEIMASPPGKRLQSLGLLSGGEQALTATALLFA 80
Query: 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
+ +PAP VLDE+DA LD+ N+ + + +
Sbjct: 81 VFLTNPAPICVLDEVDAPLDDANVDRFCAML 111
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
+A L ++P G+ PGKR Q + LSGGE+ + A ALLFA+
Sbjct: 32 RAHLTLIESDDPLEAGLEIMASPPGKRLQSLGLLSGGEQALTATALLFAV 81
>sp|Q7UQV4|SMC_RHOBA Chromosome partition protein Smc OS=Rhodopirellula baltica (strain
SH1) GN=smc PE=3 SV=2
Length = 1192
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 48 TVAALALLFAIHRI-ATIRSLGLEDLRSMALA-QNQSAQAFLGP------ENPEEPYLQG 99
T A +L I RI A R L L+ L ++ + Q ++F G E ++P G
Sbjct: 1014 TAAKDSLQRVIARINADSRRLFLDTLEAIRINFQKLYRKSFGGGHADLILEESDDPLEAG 1073
Query: 100 VNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159
V PGK + LSGGEK + A+ALL +I Y P+PF VLDE+DA D NIG+
Sbjct: 1074 VEIVATPPGKPSFSNSLLSGGEKALTAVALLMSIFQYRPSPFCVLDEVDAPFDEANIGRF 1133
Query: 160 ASYI 163
+ +
Sbjct: 1134 VTVL 1137
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 15 ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
E ++P GV PGK + LSGGEK + A+ALL +I
Sbjct: 1064 EESDDPLEAGVEIVATPPGKPSFSNSLLSGGEKALTAVALLMSI 1107
>sp|A9BZW2|SMC_DELAS Chromosome partition protein Smc OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=smc PE=3 SV=2
Length = 1175
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158
GV PGK+ Q + LSGGEK + A+AL+FAI +PAPF +LDE+DA LD+ N +
Sbjct: 1058 GVQVIAQPPGKKNQTIHLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTER 1117
Query: 159 VASYI 163
A +
Sbjct: 1118 YAKLV 1122
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
GV PGK+ Q + LSGGEK + A+AL+FAI
Sbjct: 1058 GVQVIAQPPGKKNQTIHLLSGGEKALTAIALVFAI 1092
>sp|B9E1H0|SMC_CLOK1 Chromosome partition protein Smc OS=Clostridium kluyveri (strain NBRC
12016) GN=smc PE=3 SV=1
Length = 1185
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 42/57 (73%)
Query: 107 PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
PGK+ Q + +SGGEK ++A+ALLFA+ P PF +LDEI+A+LD+ N+ + A ++
Sbjct: 1086 PGKKLQNINLMSGGEKGLSAIALLFAMLKIKPTPFCILDEIEASLDDANVLRYAEFL 1142
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 32 PGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
PGK+ Q + +SGGEK ++A+ALLFA+ +I
Sbjct: 1086 PGKKLQNINLMSGGEKGLSAIALLFAMLKI 1115
>sp|Q73VM3|SMC_MYCPA Chromosome partition protein Smc OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=smc PE=3 SV=2
Length = 1196
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 91 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA 150
+P G+ PGK+ ++ LSGGEK + A+A+L AI P+PF+++DE++AA
Sbjct: 1070 DPSNMLTTGIEVEARPPGKKITRLSLLSGGEKALTAVAMLVAIFRARPSPFYIMDEVEAA 1129
Query: 151 LDNTNIGKVAS 161
LD+TN+ ++ S
Sbjct: 1130 LDDTNLRRLIS 1140
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 16 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60
+P G+ PGK+ ++ LSGGEK + A+A+L AI R
Sbjct: 1070 DPSNMLTTGIEVEARPPGKKITRLSLLSGGEKALTAVAMLVAIFR 1114
>sp|E1X022|SMC_BACMS Chromosome partition protein Smc OS=Bacteriovorax marinus (strain
ATCC BAA-682 / DSM 15412 / SJ) GN=smc PE=3 SV=2
Length = 1226
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158
GV+ PGK+ Q + +SGGEK + A++L+F+I P+PF +LDE+DA LD+ N+G+
Sbjct: 1118 GVDIIAKPPGKKMQNINLMSGGEKAMTAVSLIFSIFLVKPSPFCLLDEVDAPLDDANVGR 1177
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
GV+ PGK+ Q + +SGGEK + A++L+F+I
Sbjct: 1118 GVDIIAKPPGKKMQNINLMSGGEKAMTAVSLIFSI 1152
>sp|Q8KBS6|SMC_CHLTE Chromosome partition protein Smc OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=smc PE=3 SV=1
Length = 1183
Score = 62.8 bits (151), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 90 ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA 149
E+P E ++Q V GK+ + LSGGEK + AL+LLFAI+ P+PF +LDE+DA
Sbjct: 1060 EDPLEAHIQIV---AKPRGKKPLAIEQLSGGEKALTALSLLFAIYLVKPSPFCILDEVDA 1116
Query: 150 ALDNTNIGK 158
LD+ N+G+
Sbjct: 1117 PLDDANVGR 1125
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 15 ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
E+P E ++Q V GK+ + LSGGEK + AL+LLFAI+ +
Sbjct: 1060 EDPLEAHIQIV---AKPRGKKPLAIEQLSGGEKALTALSLLFAIYLV 1103
>sp|Q81ZL2|SMC_COXBU Chromosome partition protein Smc OS=Coxiella burnetii (strain RSA 493
/ Nine Mile phase I) GN=smc PE=3 SV=1
Length = 1169
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158
GV PGKR + LSGGEK + A+AL+F++ +PAPF +LDE+DA LD+ N+G+
Sbjct: 1053 GVIVRAQPPGKRNVTIHMLSGGEKALTAVALVFSLFQLNPAPFCILDEVDAPLDDINVGR 1112
Query: 159 VASYI 163
+
Sbjct: 1113 FCQLV 1117
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
GV PGKR + LSGGEK + A+AL+F++ ++
Sbjct: 1053 GVIVRAQPPGKRNVTIHMLSGGEKALTAVALVFSLFQL 1090
>sp|Q10970|SMC_MYCTU Chromosome partition protein Smc OS=Mycobacterium tuberculosis GN=smc
PE=3 SV=2
Length = 1205
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 92 PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAAL 151
P++ G+ PGK+ ++ LSGGEK + A+A+L AI P+PF+++DE++AAL
Sbjct: 1078 PDDMLTTGIEVEARPPGKKITRLSLLSGGEKALTAVAMLVAIFRARPSPFYIMDEVEAAL 1137
Query: 152 DNTNIGKVAS 161
D+ N+ ++ S
Sbjct: 1138 DDVNLRRLLS 1147
Score = 36.2 bits (82), Expect = 0.090, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 17 PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60
P++ G+ PGK+ ++ LSGGEK + A+A+L AI R
Sbjct: 1078 PDDMLTTGIEVEARPPGKKITRLSLLSGGEKALTAVAMLVAIFR 1121
>sp|A9II65|SMC_BORPD Chromosome partition protein Smc OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=smc PE=3 SV=2
Length = 1176
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158
GV PGKR + LSGGEK + A AL+FA+ +PAPF +LDE+DA LD+ N +
Sbjct: 1058 GVQVMAQPPGKRNSTIHLLSGGEKALTATALVFALFKLNPAPFCLLDEVDAPLDDANTER 1117
Query: 159 VASYI 163
A+ +
Sbjct: 1118 YANLV 1122
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
GV PGKR + LSGGEK + A AL+FA+ ++
Sbjct: 1058 GVQVMAQPPGKRNSTIHLLSGGEKALTATALVFALFKL 1095
>sp|C4ZJU1|SMC_THASP Chromosome partition protein Smc OS=Thauera sp. (strain MZ1T) GN=smc
PE=3 SV=2
Length = 1208
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 93 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152
EE G+ PGK+ + LSGGEK + A+AL+F++ +PAPF +LDE+DA LD
Sbjct: 1083 EEILDAGIQIVAQPPGKKNASIHLLSGGEKALTAIALVFSMFQLNPAPFCMLDEVDAPLD 1142
Query: 153 NTNIGKVASYI 163
+TN + A+ +
Sbjct: 1143 DTNTERYANMV 1153
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
EE G+ PGK+ + LSGGEK + A+AL+F++
Sbjct: 1083 EEILDAGIQIVAQPPGKKNASIHLLSGGEKALTAIALVFSM 1123
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 48/86 (55%)
Query: 70 EDLRSMALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129
E+ M ++ + L NPE+ G+ K+ QP++ LSGGEK++ A+A
Sbjct: 1034 ENFNKMCDETIRNTEGRLNIINPEDFENCGIEIFVKFKNKKKQPLSLLSGGEKSMVAIAF 1093
Query: 130 LFAIHSYHPAPFFVLDEIDAALDNTN 155
+ AI Y P+PF LDEI+AALD N
Sbjct: 1094 IMAIFMYKPSPFTFLDEIEAALDEKN 1119
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 16 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
NPE+ G+ K+ QP++ LSGGEK++ A+A + AI
Sbjct: 1055 NPEDFENCGIEIFVKFKNKKKQPLSLLSGGEKSMVAIAFIMAI 1097
>sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3 OS=Arabidopsis
thaliana GN=SMC3 PE=2 SV=1
Length = 1204
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 112 QPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152
Q M LSGG+KTV ALAL+FAI PAPF++ DEIDAALD
Sbjct: 1094 QLMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALD 1134
Score = 37.4 bits (85), Expect = 0.048, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 37 QPMTNLSGGEKTVAALALLFAIHR 60
Q M LSGG+KTV ALAL+FAI R
Sbjct: 1094 QLMKQLSGGQKTVVALALIFAIQR 1117
>sp|B8GZ28|SMC_CAUCN Chromosome partition protein Smc OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=smc PE=1 SV=1
Length = 1147
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 84 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143
QA L ++P G+ PGKR M+ +SGGE+ + A AL+F + +PAP V
Sbjct: 1014 QAELKLIESDDPLEAGLEIFACPPGKRMASMSLMSGGEQALTASALIFGVFLANPAPICV 1073
Query: 144 LDEIDAALDNTNIGK 158
LDE+DA LD+ N+ +
Sbjct: 1074 LDEVDAPLDDANVDR 1088
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
QA L ++P G+ PGKR M+ +SGGE+ + A AL+F +
Sbjct: 1014 QAELKLIESDDPLEAGLEIFACPPGKRMASMSLMSGGEQALTASALIFGV 1063
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,325,980
Number of Sequences: 539616
Number of extensions: 2180790
Number of successful extensions: 5557
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 5368
Number of HSP's gapped (non-prelim): 231
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)