Query psy17517
Match_columns 163
No_of_seqs 121 out of 2242
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:36:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 5.4E-41 1.2E-45 258.1 10.3 141 8-162 7-178 (240)
2 COG1135 AbcC ABC-type metal io 100.0 1.1E-38 2.3E-43 256.1 8.3 144 8-163 6-184 (339)
3 KOG0058|consensus 100.0 1.2E-37 2.7E-42 271.3 11.6 149 7-162 469-646 (716)
4 COG1116 TauB ABC-type nitrate/ 100.0 5.6E-38 1.2E-42 246.1 7.3 140 8-162 8-172 (248)
5 COG1117 PstB ABC-type phosphat 100.0 7.3E-38 1.6E-42 240.5 7.5 147 6-162 10-191 (253)
6 COG1120 FepC ABC-type cobalami 100.0 3.1E-37 6.7E-42 244.8 11.0 142 8-163 7-181 (258)
7 COG1122 CbiO ABC-type cobalt t 100.0 2.7E-37 5.8E-42 243.5 9.6 143 8-163 8-181 (235)
8 COG1136 SalX ABC-type antimicr 100.0 9.7E-37 2.1E-41 237.9 11.1 143 8-163 6-185 (226)
9 COG2884 FtsE Predicted ATPase 100.0 3.7E-37 8E-42 232.8 7.3 143 7-163 5-180 (223)
10 KOG0055|consensus 100.0 2.8E-36 6.1E-41 274.7 11.2 152 5-163 989-1169(1228)
11 COG1125 OpuBA ABC-type proline 100.0 1.1E-36 2.4E-41 239.2 7.3 144 7-162 5-177 (309)
12 COG3638 ABC-type phosphate/pho 100.0 3.7E-36 8.1E-41 233.8 9.1 144 7-163 7-190 (258)
13 KOG0055|consensus 100.0 7.4E-36 1.6E-40 272.0 11.9 150 7-163 354-532 (1228)
14 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-35 2.6E-40 234.9 10.2 145 5-163 6-182 (254)
15 COG3839 MalK ABC-type sugar tr 100.0 3.2E-36 6.9E-41 247.0 6.5 140 8-162 8-175 (338)
16 COG1124 DppF ABC-type dipeptid 100.0 2.3E-35 4.9E-40 230.3 10.0 146 8-163 8-184 (252)
17 COG2274 SunT ABC-type bacterio 100.0 7.8E-35 1.7E-39 258.6 12.9 149 6-162 474-651 (709)
18 COG3842 PotA ABC-type spermidi 100.0 1.5E-35 3.3E-40 244.2 6.6 140 8-162 10-178 (352)
19 TIGR02868 CydC thiol reductant 100.0 1.7E-34 3.6E-39 250.1 12.6 146 7-162 338-512 (529)
20 COG1127 Ttg2A ABC-type transpo 100.0 2.1E-34 4.6E-39 224.5 9.5 142 7-162 12-187 (263)
21 TIGR02314 ABC_MetN D-methionin 100.0 3.8E-34 8.1E-39 236.8 9.8 143 8-163 6-183 (343)
22 PRK11174 cysteine/glutathione 100.0 1.5E-33 3.3E-38 246.8 13.5 145 8-162 354-527 (588)
23 TIGR00960 3a0501s02 Type II (G 100.0 1.9E-33 4.1E-38 218.2 11.2 142 8-163 6-181 (216)
24 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.1E-33 6.8E-38 248.8 13.6 147 8-162 456-630 (686)
25 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.8E-33 6E-38 250.0 13.0 147 8-162 482-657 (710)
26 TIGR00958 3a01208 Conjugate Tr 100.0 5.4E-33 1.2E-37 248.4 13.9 148 7-161 482-658 (711)
27 cd03226 ABC_cobalt_CbiO_domain 100.0 3.4E-33 7.3E-38 215.3 10.7 143 8-163 4-169 (205)
28 COG1118 CysA ABC-type sulfate/ 100.0 8.7E-34 1.9E-38 227.6 7.6 140 9-163 8-180 (345)
29 COG1132 MdlB ABC-type multidru 100.0 4.8E-33 1E-37 243.0 12.9 147 7-162 332-507 (567)
30 cd03225 ABC_cobalt_CbiO_domain 100.0 7.7E-33 1.7E-37 213.9 12.3 144 8-163 4-177 (211)
31 cd03261 ABC_Org_Solvent_Resist 100.0 5E-33 1.1E-37 218.5 11.0 140 8-163 5-179 (235)
32 KOG0057|consensus 100.0 4E-33 8.6E-38 237.0 11.1 146 8-162 356-529 (591)
33 PTZ00265 multidrug resistance 100.0 6E-33 1.3E-37 262.4 13.4 149 7-162 1169-1400(1466)
34 PRK11650 ugpC glycerol-3-phosp 100.0 1.7E-33 3.7E-38 234.0 8.1 138 8-162 8-176 (356)
35 PRK13650 cbiO cobalt transport 100.0 4.5E-33 9.7E-38 224.4 10.3 145 8-163 9-183 (279)
36 PRK13637 cbiO cobalt transport 100.0 9.2E-33 2E-37 223.5 11.3 146 7-163 6-187 (287)
37 TIGR03375 type_I_sec_LssB type 100.0 1.2E-32 2.5E-37 245.5 13.0 148 7-162 467-643 (694)
38 PRK11176 lipid transporter ATP 100.0 1.6E-32 3.5E-37 240.0 13.6 147 8-162 346-522 (582)
39 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 9.7E-33 2.1E-37 214.3 10.9 143 8-163 5-183 (218)
40 PRK11153 metN DL-methionine tr 100.0 1.2E-32 2.5E-37 228.0 11.8 143 8-163 6-183 (343)
41 TIGR02857 CydD thiol reductant 100.0 1.8E-32 3.8E-37 237.5 13.4 147 8-162 325-500 (529)
42 TIGR02211 LolD_lipo_ex lipopro 100.0 1.9E-32 4.1E-37 213.1 11.6 143 8-163 6-184 (221)
43 TIGR02673 FtsE cell division A 100.0 2.2E-32 4.7E-37 211.8 11.5 141 8-163 6-180 (214)
44 cd03259 ABC_Carb_Solutes_like 100.0 1.4E-32 3.1E-37 212.8 10.2 140 8-163 5-173 (213)
45 PRK11432 fbpC ferric transport 100.0 4.8E-33 1E-37 230.9 8.0 137 8-162 11-178 (351)
46 cd03292 ABC_FtsE_transporter F 100.0 2.6E-32 5.6E-37 211.2 11.5 141 8-163 5-179 (214)
47 cd03235 ABC_Metallic_Cations A 100.0 1.2E-32 2.6E-37 213.2 9.7 142 8-163 4-175 (213)
48 PRK13647 cbiO cobalt transport 100.0 1.5E-32 3.2E-37 220.9 10.4 143 8-163 9-181 (274)
49 cd03293 ABC_NrtD_SsuB_transpor 100.0 9.4E-33 2E-37 214.9 9.0 143 8-163 5-174 (220)
50 PRK11160 cysteine/glutathione 100.0 2.4E-32 5.1E-37 239.2 12.5 147 8-162 343-517 (574)
51 PRK13646 cbiO cobalt transport 100.0 1.5E-32 3.3E-37 222.1 10.4 146 7-163 6-188 (286)
52 COG1131 CcmA ABC-type multidru 100.0 2.1E-32 4.6E-37 222.2 11.0 143 8-163 9-179 (293)
53 TIGR01193 bacteriocin_ABC ABC- 100.0 2.7E-32 6E-37 243.5 12.8 146 8-162 478-653 (708)
54 PRK13634 cbiO cobalt transport 100.0 2E-32 4.4E-37 221.8 10.6 145 8-163 7-188 (290)
55 TIGR01166 cbiO cobalt transpor 100.0 2E-32 4.3E-37 208.8 9.8 135 18-163 4-170 (190)
56 cd03214 ABC_Iron-Siderophores_ 100.0 3.3E-32 7.1E-37 206.3 10.9 128 8-163 4-140 (180)
57 PRK11629 lolD lipoprotein tran 100.0 4.2E-32 9.2E-37 213.1 11.9 143 8-163 10-188 (233)
58 cd03256 ABC_PhnC_transporter A 100.0 2.7E-32 5.8E-37 214.6 10.8 141 8-163 5-187 (241)
59 PRK09536 btuD corrinoid ABC tr 100.0 3E-32 6.5E-37 229.5 11.6 140 8-163 8-182 (402)
60 cd03266 ABC_NatA_sodium_export 100.0 3.4E-32 7.3E-37 211.3 11.0 143 8-163 6-179 (218)
61 PRK13631 cbiO cobalt transport 100.0 2.6E-32 5.7E-37 224.0 10.8 145 8-163 26-219 (320)
62 TIGR01186 proV glycine betaine 100.0 2.9E-32 6.4E-37 226.9 11.0 132 18-162 5-171 (363)
63 PRK13643 cbiO cobalt transport 100.0 3.2E-32 6.9E-37 220.4 10.9 144 8-162 6-186 (288)
64 PRK10790 putative multidrug tr 100.0 7E-32 1.5E-36 236.6 13.9 147 7-162 344-518 (592)
65 PRK13651 cobalt transporter AT 100.0 2.4E-32 5.1E-37 223.0 10.1 145 8-163 7-208 (305)
66 cd03268 ABC_BcrA_bacitracin_re 100.0 2.2E-32 4.8E-37 211.0 9.4 140 8-163 5-169 (208)
67 TIGR03265 PhnT2 putative 2-ami 100.0 8.9E-33 1.9E-37 229.5 7.6 137 8-162 9-176 (353)
68 PRK13537 nodulation ABC transp 100.0 3.7E-32 8.1E-37 221.9 10.8 140 8-163 12-181 (306)
69 PRK11247 ssuB aliphatic sulfon 100.0 2.7E-32 5.8E-37 217.8 9.7 139 8-162 17-175 (257)
70 TIGR02315 ABC_phnC phosphonate 100.0 4.7E-32 1E-36 213.6 10.7 141 8-163 6-188 (243)
71 PRK10908 cell division protein 100.0 7.2E-32 1.6E-36 210.2 11.7 141 8-163 6-180 (222)
72 cd03263 ABC_subfamily_A The AB 100.0 5.7E-32 1.2E-36 210.3 10.9 142 8-163 5-176 (220)
73 PRK13657 cyclic beta-1,2-gluca 100.0 8.2E-32 1.8E-36 236.1 13.2 146 8-162 339-513 (588)
74 cd03219 ABC_Mj1267_LivG_branch 100.0 4.2E-32 9.1E-37 213.0 10.2 140 8-163 5-186 (236)
75 PRK09452 potA putrescine/sperm 100.0 1.4E-32 3.1E-37 229.8 7.9 138 8-163 19-187 (375)
76 TIGR01188 drrA daunorubicin re 100.0 5.8E-32 1.3E-36 220.2 11.3 132 19-163 6-167 (302)
77 cd03262 ABC_HisP_GlnQ_permease 100.0 6.3E-32 1.4E-36 208.9 10.8 142 8-163 5-178 (213)
78 cd03258 ABC_MetN_methionine_tr 100.0 9.3E-32 2E-36 210.9 11.8 146 7-163 5-183 (233)
79 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.8E-32 1.5E-36 213.0 11.1 141 8-163 5-178 (242)
80 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-31 2.4E-36 234.0 13.4 147 8-162 335-511 (571)
81 COG4987 CydC ABC-type transpor 100.0 7.9E-32 1.7E-36 228.8 12.1 148 8-163 341-517 (573)
82 cd03260 ABC_PstB_phosphate_tra 100.0 7.9E-32 1.7E-36 210.5 11.1 140 8-163 5-184 (227)
83 cd03265 ABC_DrrA DrrA is the A 100.0 6.6E-32 1.4E-36 210.2 10.6 140 8-163 5-174 (220)
84 TIGR03608 L_ocin_972_ABC putat 100.0 7.7E-32 1.7E-36 207.5 10.6 142 8-163 3-177 (206)
85 PRK10851 sulfate/thiosulfate t 100.0 3.2E-32 6.9E-37 226.2 8.8 138 8-163 7-179 (353)
86 COG4988 CydD ABC-type transpor 100.0 1.8E-31 3.9E-36 228.7 13.6 147 7-162 324-498 (559)
87 TIGR01842 type_I_sec_PrtD type 100.0 1.6E-31 3.4E-36 232.5 13.6 147 8-162 321-496 (544)
88 cd03218 ABC_YhbG The ABC trans 100.0 8.1E-32 1.8E-36 210.9 10.6 140 8-163 5-176 (232)
89 cd03264 ABC_drug_resistance_li 100.0 7E-32 1.5E-36 208.7 10.0 138 8-163 5-173 (211)
90 cd03248 ABCC_TAP TAP, the Tran 100.0 1.4E-31 3.1E-36 208.9 11.8 143 8-163 16-193 (226)
91 PRK11000 maltose/maltodextrin 100.0 2.2E-32 4.8E-37 228.3 7.7 137 8-162 8-175 (369)
92 cd03301 ABC_MalK_N The N-termi 100.0 6.7E-32 1.5E-36 208.9 9.7 138 8-163 5-173 (213)
93 TIGR02204 MsbA_rel ABC transpo 100.0 1.5E-31 3.3E-36 233.5 13.1 148 8-162 342-518 (576)
94 TIGR01288 nodI ATP-binding ABC 100.0 9.4E-32 2E-36 219.0 10.9 140 8-163 9-178 (303)
95 TIGR03258 PhnT 2-aminoethylpho 100.0 2.5E-32 5.3E-37 227.5 7.5 138 8-163 10-180 (362)
96 PRK13536 nodulation factor exp 100.0 1E-31 2.2E-36 222.2 11.0 142 8-163 46-215 (340)
97 cd03233 ABC_PDR_domain1 The pl 100.0 1.9E-31 4.1E-36 205.7 11.8 143 7-163 7-161 (202)
98 PRK11022 dppD dipeptide transp 100.0 9.2E-32 2E-36 221.3 10.6 148 8-163 8-196 (326)
99 PRK11308 dppF dipeptide transp 100.0 5.3E-32 1.2E-36 222.8 9.2 134 19-163 28-197 (327)
100 COG3840 ThiQ ABC-type thiamine 100.0 5.5E-32 1.2E-36 203.8 8.4 138 7-162 5-171 (231)
101 cd03231 ABC_CcmA_heme_exporter 100.0 1.4E-31 3E-36 206.1 10.9 142 8-163 5-168 (201)
102 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-31 2.5E-36 208.7 10.5 140 8-163 5-175 (222)
103 PRK14250 phosphate ABC transpo 100.0 1.1E-31 2.3E-36 212.0 10.4 140 8-163 8-174 (241)
104 cd03257 ABC_NikE_OppD_transpor 100.0 2.3E-31 5E-36 207.5 12.2 145 8-163 6-188 (228)
105 PRK10584 putative ABC transpor 100.0 1.6E-31 3.4E-36 208.9 11.2 143 8-163 11-189 (228)
106 COG1123 ATPase components of v 100.0 7E-32 1.5E-36 231.4 9.8 136 18-163 303-472 (539)
107 PRK13635 cbiO cobalt transport 100.0 1.1E-31 2.3E-36 216.5 10.3 145 7-163 9-183 (279)
108 TIGR01189 ccmA heme ABC export 100.0 1.1E-31 2.4E-36 206.0 9.9 141 8-163 5-170 (198)
109 COG4181 Predicted ABC-type tra 100.0 9.4E-32 2E-36 201.1 9.0 135 18-163 22-189 (228)
110 PRK13641 cbiO cobalt transport 100.0 1.3E-31 2.8E-36 216.7 10.6 145 8-163 7-188 (287)
111 cd03296 ABC_CysA_sulfate_impor 100.0 6.4E-32 1.4E-36 212.8 8.5 140 8-163 7-179 (239)
112 PRK13638 cbiO cobalt transport 100.0 2.6E-31 5.6E-36 213.2 12.1 143 7-163 5-179 (271)
113 COG4598 HisP ABC-type histidin 100.0 3.3E-32 7E-37 205.2 6.4 139 8-162 11-194 (256)
114 PRK13633 cobalt transporter AT 100.0 1.3E-31 2.8E-36 215.9 10.4 145 8-163 9-187 (280)
115 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.7E-31 3.8E-36 209.9 10.8 139 8-163 6-175 (236)
116 PRK13642 cbiO cobalt transport 100.0 1.2E-31 2.6E-36 215.9 10.0 146 7-163 8-183 (277)
117 cd03252 ABCC_Hemolysin The ABC 100.0 5.9E-31 1.3E-35 206.8 13.7 146 8-163 5-181 (237)
118 PRK13644 cbiO cobalt transport 100.0 1.4E-31 2.9E-36 215.3 10.2 143 8-163 6-179 (274)
119 TIGR01846 type_I_sec_HlyB type 100.0 4E-31 8.7E-36 235.7 13.9 148 7-162 459-635 (694)
120 PRK13652 cbiO cobalt transport 100.0 2E-31 4.3E-36 214.6 10.7 143 8-163 8-180 (277)
121 PRK13636 cbiO cobalt transport 100.0 1.7E-31 3.7E-36 215.6 10.4 143 8-163 10-184 (283)
122 cd03269 ABC_putative_ATPase Th 100.0 1.8E-31 4E-36 206.2 10.1 140 8-163 5-171 (210)
123 PRK11264 putative amino-acid A 100.0 3.2E-31 7E-36 209.8 11.7 139 8-162 8-186 (250)
124 cd03245 ABCC_bacteriocin_expor 100.0 2.7E-31 5.8E-36 206.5 10.6 142 8-163 7-183 (220)
125 PRK10789 putative multidrug tr 100.0 4.9E-31 1.1E-35 230.6 13.5 147 8-162 318-493 (569)
126 PRK15079 oligopeptide ABC tran 100.0 3.3E-31 7.1E-36 218.5 11.6 135 19-163 34-204 (331)
127 TIGR03410 urea_trans_UrtE urea 100.0 2.9E-31 6.4E-36 207.7 10.8 141 8-163 5-174 (230)
128 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.7E-31 2.1E-35 205.7 13.8 149 8-163 5-182 (238)
129 TIGR02769 nickel_nikE nickel i 100.0 5.5E-31 1.2E-35 210.7 12.5 145 8-163 7-193 (265)
130 TIGR03411 urea_trans_UrtD urea 100.0 2.8E-31 6E-36 209.2 10.7 140 8-163 7-186 (242)
131 PRK11831 putative ABC transpor 100.0 3E-31 6.6E-36 212.6 11.0 140 8-163 12-186 (269)
132 PRK13632 cbiO cobalt transport 100.0 4.1E-31 8.8E-36 212.1 11.7 144 8-163 12-185 (271)
133 PRK13538 cytochrome c biogenes 100.0 1.9E-31 4.1E-36 205.7 9.3 142 8-163 6-172 (204)
134 COG4525 TauB ABC-type taurine 100.0 2.7E-32 5.8E-37 207.7 4.5 145 7-163 7-175 (259)
135 PRK11300 livG leucine/isoleuci 100.0 3E-31 6.6E-36 210.5 10.8 140 8-163 10-196 (255)
136 PRK11607 potG putrescine trans 100.0 1.1E-31 2.4E-36 224.6 8.7 137 8-162 24-191 (377)
137 PRK13648 cbiO cobalt transport 100.0 6.4E-31 1.4E-35 210.7 12.7 144 8-163 12-185 (269)
138 PRK10247 putative ABC transpor 100.0 3.8E-31 8.1E-36 206.9 11.0 139 8-162 12-179 (225)
139 TIGR03522 GldA_ABC_ATP gliding 100.0 2.7E-31 5.8E-36 216.3 10.5 142 8-163 7-176 (301)
140 PRK13540 cytochrome c biogenes 100.0 4.9E-31 1.1E-35 202.8 11.3 142 8-163 6-170 (200)
141 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.6E-31 5.6E-36 213.1 10.0 140 8-163 29-203 (269)
142 PRK11248 tauB taurine transpor 100.0 1.4E-31 3E-36 213.3 8.3 140 8-163 6-171 (255)
143 PRK10575 iron-hydroxamate tran 100.0 3.6E-31 7.7E-36 211.7 10.4 140 8-163 16-190 (265)
144 cd03244 ABCC_MRP_domain2 Domai 100.0 4.8E-31 1E-35 205.2 10.7 147 7-163 6-182 (221)
145 COG4619 ABC-type uncharacteriz 100.0 5.3E-31 1.2E-35 196.4 10.4 141 11-162 9-175 (223)
146 PRK11124 artP arginine transpo 100.0 5.1E-31 1.1E-35 207.9 10.9 140 8-163 7-184 (242)
147 PRK13649 cbiO cobalt transport 100.0 4.4E-31 9.6E-36 212.6 10.8 145 8-163 7-188 (280)
148 PRK13548 hmuV hemin importer A 100.0 5.7E-31 1.2E-35 209.9 11.3 144 8-163 7-183 (258)
149 PRK15093 antimicrobial peptide 100.0 6.3E-31 1.4E-35 216.6 11.8 148 8-163 8-201 (330)
150 PRK09493 glnQ glutamine ABC tr 100.0 4.7E-31 1E-35 207.8 10.5 140 8-163 6-179 (240)
151 cd03254 ABCC_Glucan_exporter_l 100.0 1.6E-30 3.4E-35 203.3 13.4 147 8-163 7-182 (229)
152 PRK10253 iron-enterobactin tra 100.0 5.4E-31 1.2E-35 210.7 10.8 141 7-163 11-186 (265)
153 PRK13639 cbiO cobalt transport 100.0 4.2E-31 9.1E-36 212.5 10.2 143 8-163 6-180 (275)
154 TIGR03005 ectoine_ehuA ectoine 100.0 4E-31 8.7E-36 209.7 10.0 139 8-162 5-188 (252)
155 PRK11231 fecE iron-dicitrate t 100.0 3.2E-31 6.9E-36 210.7 9.3 140 8-163 7-181 (255)
156 PRK10938 putative molybdenum t 100.0 4.7E-31 1E-35 226.9 10.9 143 7-163 7-178 (490)
157 PRK11701 phnK phosphonate C-P 100.0 6.9E-31 1.5E-35 209.1 11.1 141 8-162 11-193 (258)
158 PRK10895 lipopolysaccharide AB 100.0 6E-31 1.3E-35 207.4 10.5 139 8-162 8-179 (241)
159 cd03246 ABCC_Protease_Secretio 100.0 1.8E-30 3.8E-35 195.7 12.5 126 8-163 5-139 (173)
160 TIGR00972 3a0107s01c2 phosphat 100.0 9.5E-31 2.1E-35 207.0 11.5 144 8-163 6-187 (247)
161 cd03251 ABCC_MsbA MsbA is an e 100.0 2.6E-30 5.7E-35 202.6 13.8 146 8-163 5-181 (234)
162 PRK09473 oppD oligopeptide tra 100.0 5.3E-31 1.2E-35 217.1 10.3 148 8-163 17-204 (330)
163 PRK15112 antimicrobial peptide 100.0 1.2E-30 2.5E-35 209.1 12.0 146 8-163 9-192 (267)
164 PRK13640 cbiO cobalt transport 100.0 5.7E-31 1.2E-35 212.5 10.3 144 8-163 10-186 (282)
165 PRK13539 cytochrome c biogenes 100.0 4.8E-31 1E-35 204.0 9.3 142 8-163 7-170 (207)
166 PRK14247 phosphate ABC transpo 100.0 9.8E-31 2.1E-35 207.1 11.3 144 8-163 8-189 (250)
167 cd03253 ABCC_ATM1_transporter 100.0 3E-30 6.4E-35 202.5 13.7 147 8-163 5-180 (236)
168 PRK10522 multidrug transporter 100.0 6.9E-31 1.5E-35 228.7 11.1 145 8-162 327-491 (547)
169 TIGR01192 chvA glucan exporter 100.0 1.7E-30 3.6E-35 228.0 13.6 147 7-162 338-513 (585)
170 KOG0056|consensus 100.0 3.2E-31 6.8E-36 223.7 8.5 148 6-162 540-716 (790)
171 cd03234 ABCG_White The White s 100.0 9.1E-31 2E-35 204.6 10.6 143 8-163 8-186 (226)
172 PRK11614 livF leucine/isoleuci 100.0 9.1E-31 2E-35 205.9 10.4 142 8-163 10-180 (237)
173 COG4555 NatA ABC-type Na+ tran 100.0 1.5E-31 3.3E-36 204.1 5.7 143 8-163 6-176 (245)
174 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.7E-30 8.1E-35 198.6 13.6 138 8-163 11-168 (207)
175 TIGR02323 CP_lyasePhnK phospho 100.0 1E-30 2.2E-35 207.3 10.6 141 8-162 8-190 (253)
176 COG0444 DppD ABC-type dipeptid 100.0 6.7E-31 1.5E-35 212.4 9.6 139 18-163 17-196 (316)
177 cd03289 ABCC_CFTR2 The CFTR su 100.0 1E-30 2.3E-35 210.6 10.5 143 7-163 6-181 (275)
178 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-30 2.6E-35 227.7 11.7 143 8-161 342-511 (555)
179 TIGR01978 sufC FeS assembly AT 100.0 1.2E-30 2.6E-35 205.5 10.5 140 8-163 5-187 (243)
180 PRK10070 glycine betaine trans 100.0 1.4E-30 3E-35 219.3 11.2 132 19-163 41-207 (400)
181 cd03247 ABCC_cytochrome_bd The 100.0 2.9E-30 6.2E-35 195.2 11.7 129 8-163 5-141 (178)
182 PRK13645 cbiO cobalt transport 100.0 1.1E-30 2.4E-35 211.3 10.0 145 8-162 11-192 (289)
183 cd03229 ABC_Class3 This class 100.0 3.7E-30 8.1E-35 194.7 12.1 128 8-163 5-143 (178)
184 TIGR03873 F420-0_ABC_ATP propo 100.0 1.4E-30 2.9E-35 207.2 10.0 142 8-163 6-180 (256)
185 cd03230 ABC_DR_subfamily_A Thi 100.0 2.2E-30 4.7E-35 195.2 10.4 125 8-163 5-138 (173)
186 cd03298 ABC_ThiQ_thiamine_tran 100.0 9.9E-31 2.2E-35 202.2 8.7 136 8-163 5-171 (211)
187 PLN03232 ABC transporter C fam 100.0 3.8E-30 8.3E-35 244.2 14.3 148 7-162 1238-1413(1495)
188 COG4161 ArtP ABC-type arginine 100.0 6.5E-31 1.4E-35 195.4 7.0 142 5-162 4-183 (242)
189 COG1119 ModF ABC-type molybden 100.0 2.1E-30 4.5E-35 202.7 10.1 142 7-162 35-213 (257)
190 PRK14269 phosphate ABC transpo 100.0 1.7E-30 3.8E-35 205.5 9.8 146 6-163 5-185 (246)
191 PRK14267 phosphate ABC transpo 100.0 3.2E-30 7E-35 204.5 11.3 144 8-163 9-192 (253)
192 PRK14242 phosphate transporter 100.0 1.8E-30 3.9E-35 206.0 9.8 144 8-163 11-192 (253)
193 COG1137 YhbG ABC-type (unclass 100.0 2E-31 4.3E-36 203.2 3.9 140 9-162 10-181 (243)
194 PRK10619 histidine/lysine/argi 100.0 2.8E-30 6.1E-35 205.5 10.7 140 8-163 10-195 (257)
195 COG1123 ATPase components of v 100.0 1.5E-30 3.2E-35 223.3 9.6 151 2-163 6-197 (539)
196 PRK13543 cytochrome c biogenes 100.0 3E-30 6.4E-35 200.5 10.5 142 8-163 16-180 (214)
197 cd03216 ABC_Carb_Monos_I This 100.0 3.8E-30 8.3E-35 192.4 10.6 112 8-163 5-125 (163)
198 TIGR02982 heterocyst_DevA ABC 100.0 2.2E-30 4.8E-35 201.7 9.5 143 8-163 6-184 (220)
199 cd03228 ABCC_MRP_Like The MRP 100.0 9.6E-30 2.1E-34 191.3 12.5 126 8-163 5-139 (171)
200 PRK14259 phosphate ABC transpo 100.0 2.5E-30 5.5E-35 207.4 10.0 144 8-163 18-197 (269)
201 PRK15056 manganese/iron transp 100.0 3.1E-30 6.8E-35 207.1 10.5 143 8-163 11-185 (272)
202 PRK09984 phosphonate/organopho 100.0 2.7E-30 5.9E-35 206.1 9.8 140 8-163 9-195 (262)
203 PRK15439 autoinducer 2 ABC tra 100.0 4.9E-30 1.1E-34 221.8 12.1 140 8-163 16-183 (510)
204 PLN03130 ABC transporter C fam 100.0 8E-30 1.7E-34 243.0 14.6 148 7-162 1241-1416(1622)
205 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.7E-30 3.6E-35 203.3 8.3 135 18-163 34-185 (224)
206 PRK09700 D-allose transporter 100.0 3.5E-30 7.5E-35 222.6 11.0 140 8-163 10-188 (510)
207 PRK10419 nikE nickel transport 100.0 1.1E-29 2.4E-34 203.6 13.0 146 7-163 7-194 (268)
208 COG4175 ProV ABC-type proline/ 100.0 8.7E-31 1.9E-35 211.1 6.6 133 18-162 40-206 (386)
209 PRK14273 phosphate ABC transpo 100.0 3.2E-30 6.9E-35 204.8 9.5 144 8-163 12-193 (254)
210 PRK09544 znuC high-affinity zi 100.0 4.7E-30 1E-34 204.2 10.3 137 8-162 9-162 (251)
211 PRK10744 pstB phosphate transp 100.0 4.3E-30 9.3E-35 204.9 9.9 144 8-163 18-199 (260)
212 TIGR02324 CP_lyasePhnL phospho 100.0 9E-30 1.9E-34 198.5 11.5 144 7-163 5-192 (224)
213 TIGR03740 galliderm_ABC gallid 100.0 2.1E-30 4.5E-35 202.1 7.9 140 8-163 5-167 (223)
214 PRK11144 modC molybdate transp 100.0 3.8E-30 8.3E-35 213.6 9.9 138 8-163 5-171 (352)
215 cd03297 ABC_ModC_molybdenum_tr 100.0 7E-30 1.5E-34 198.0 10.6 139 8-163 5-174 (214)
216 TIGR03415 ABC_choXWV_ATP choli 100.0 5.7E-30 1.2E-34 214.4 10.7 139 9-163 30-207 (382)
217 PRK14241 phosphate transporter 100.0 8E-30 1.7E-34 203.0 11.0 145 7-163 8-191 (258)
218 PRK10762 D-ribose transporter 100.0 4.8E-30 1E-34 221.3 10.4 140 8-163 9-184 (501)
219 PRK13547 hmuV hemin importer A 100.0 8E-30 1.7E-34 205.1 11.0 146 8-163 6-197 (272)
220 cd03238 ABC_UvrA The excision 100.0 8.6E-30 1.9E-34 193.1 10.3 120 18-162 7-131 (176)
221 PRK10261 glutathione transport 100.0 7.2E-30 1.6E-34 225.5 11.4 145 8-163 318-506 (623)
222 PTZ00265 multidrug resistance 100.0 1.2E-29 2.6E-34 240.0 13.7 147 8-163 387-622 (1466)
223 TIGR02142 modC_ABC molybdenum 100.0 3.7E-30 8E-35 213.9 8.7 138 8-163 4-174 (354)
224 PRK14235 phosphate transporter 100.0 5.2E-30 1.1E-34 205.3 9.2 144 8-163 24-206 (267)
225 TIGR01277 thiQ thiamine ABC tr 100.0 9.7E-30 2.1E-34 197.2 10.4 136 8-163 5-171 (213)
226 PRK13549 xylose transporter AT 100.0 1E-29 2.2E-34 219.6 11.6 140 8-163 10-186 (506)
227 cd03300 ABC_PotA_N PotA is an 100.0 1.3E-29 2.8E-34 199.0 10.9 138 8-163 5-173 (232)
228 PRK14268 phosphate ABC transpo 100.0 9.1E-30 2E-34 202.8 10.1 144 8-163 17-197 (258)
229 PRK14253 phosphate ABC transpo 100.0 9.5E-30 2.1E-34 201.4 9.9 145 7-163 7-188 (249)
230 COG4559 ABC-type hemin transpo 100.0 1.6E-29 3.4E-34 194.4 10.8 136 18-162 13-183 (259)
231 cd03223 ABCD_peroxisomal_ALDP 100.0 2.8E-29 6E-34 188.3 11.9 127 8-162 5-133 (166)
232 cd03288 ABCC_SUR2 The SUR doma 100.0 4.8E-29 1E-33 198.6 14.0 145 8-162 24-198 (257)
233 PRK10982 galactose/methyl gala 100.0 9.9E-30 2.1E-34 218.9 10.7 140 8-163 3-177 (491)
234 TIGR00957 MRP_assoc_pro multi 100.0 2.6E-29 5.6E-34 238.9 14.5 149 7-163 1288-1464(1522)
235 PRK14248 phosphate ABC transpo 100.0 8E-30 1.7E-34 204.1 9.3 144 8-163 26-207 (268)
236 PRK15134 microcin C ABC transp 100.0 1.3E-29 2.7E-34 220.0 11.2 145 8-163 10-199 (529)
237 PRK14240 phosphate transporter 100.0 1.5E-29 3.1E-34 200.4 10.6 144 8-163 8-189 (250)
238 COG0410 LivF ABC-type branched 100.0 2E-29 4.3E-34 195.7 10.9 146 8-163 8-179 (237)
239 cd03290 ABCC_SUR1_N The SUR do 100.0 1.4E-29 3E-34 196.8 10.0 143 8-161 5-181 (218)
240 PTZ00243 ABC transporter; Prov 100.0 3E-29 6.5E-34 238.6 14.3 147 8-162 1313-1488(1560)
241 PRK14251 phosphate ABC transpo 100.0 1E-29 2.2E-34 201.5 9.3 144 8-163 9-190 (251)
242 COG4618 ArpD ABC-type protease 100.0 3E-29 6.5E-34 212.0 12.5 147 8-162 339-514 (580)
243 PRK14257 phosphate ABC transpo 100.0 1.9E-29 4.2E-34 207.8 11.2 146 8-163 85-268 (329)
244 PRK10771 thiQ thiamine transpo 100.0 2.4E-29 5.2E-34 197.3 11.2 136 8-163 6-172 (232)
245 PRK14249 phosphate ABC transpo 100.0 1.4E-29 3E-34 200.8 9.9 144 8-163 9-190 (251)
246 cd03232 ABC_PDR_domain2 The pl 100.0 2.5E-29 5.4E-34 192.4 10.9 137 7-163 7-151 (192)
247 TIGR01184 ntrCD nitrate transp 100.0 7.2E-30 1.6E-34 200.4 8.1 131 22-163 1-157 (230)
248 PRK13541 cytochrome c biogenes 100.0 1.8E-29 3.9E-34 193.4 10.1 140 8-162 6-165 (195)
249 PRK10418 nikD nickel transport 100.0 3E-29 6.5E-34 199.4 11.6 141 8-163 9-183 (254)
250 COG4608 AppF ABC-type oligopep 100.0 7.1E-30 1.5E-34 202.6 8.0 123 19-163 26-152 (268)
251 PRK13549 xylose transporter AT 100.0 2.9E-29 6.2E-34 216.8 12.2 145 8-163 264-448 (506)
252 PRK14256 phosphate ABC transpo 100.0 2.6E-29 5.6E-34 199.3 10.8 144 8-163 9-191 (252)
253 cd03299 ABC_ModC_like Archeal 100.0 2.4E-29 5.3E-34 197.8 10.6 136 8-162 5-171 (235)
254 PRK14245 phosphate ABC transpo 100.0 1.6E-29 3.5E-34 200.3 9.6 144 8-163 8-189 (250)
255 PRK14254 phosphate ABC transpo 100.0 1.1E-29 2.4E-34 205.3 8.9 144 8-163 44-223 (285)
256 TIGR00968 3a0106s01 sulfate AB 100.0 2.1E-29 4.6E-34 198.4 10.2 138 8-163 5-173 (237)
257 PRK11288 araG L-arabinose tran 100.0 1.5E-29 3.3E-34 218.2 10.3 140 8-163 9-183 (501)
258 PRK14262 phosphate ABC transpo 100.0 1.3E-29 2.8E-34 200.8 8.9 144 8-163 8-189 (250)
259 PRK14272 phosphate ABC transpo 100.0 2.9E-29 6.2E-34 198.8 10.9 144 8-163 9-191 (252)
260 cd03267 ABC_NatA_like Similar 100.0 2.3E-29 5E-34 198.2 10.2 135 18-163 33-196 (236)
261 CHL00131 ycf16 sulfate ABC tra 100.0 2.7E-29 5.8E-34 199.0 10.6 142 8-163 12-194 (252)
262 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.9E-29 6.3E-34 193.1 10.5 131 8-163 5-147 (200)
263 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.8E-29 3.9E-34 200.4 9.5 135 11-163 1-158 (246)
264 PRK14239 phosphate transporter 100.0 1.4E-29 3E-34 200.6 8.8 145 7-163 9-191 (252)
265 PRK09580 sufC cysteine desulfu 100.0 3.5E-29 7.7E-34 197.7 11.1 142 8-162 6-187 (248)
266 PRK14237 phosphate transporter 100.0 2.3E-29 4.9E-34 201.6 10.1 144 8-163 25-206 (267)
267 cd03215 ABC_Carb_Monos_II This 100.0 6.9E-29 1.5E-33 188.4 12.1 120 21-163 15-147 (182)
268 PRK14243 phosphate transporter 100.0 1.8E-29 3.8E-34 201.9 9.3 144 8-163 15-194 (264)
269 PRK14275 phosphate ABC transpo 100.0 1.6E-29 3.4E-34 204.5 9.0 144 8-163 44-225 (286)
270 COG4172 ABC-type uncharacteriz 100.0 6.2E-30 1.4E-34 211.7 6.8 136 19-163 300-469 (534)
271 cd03213 ABCG_EPDR ABCG transpo 100.0 5.3E-29 1.2E-33 190.9 11.5 136 8-163 8-154 (194)
272 PRK14274 phosphate ABC transpo 100.0 2.3E-29 5.1E-34 200.4 9.8 144 8-163 17-198 (259)
273 PRK15134 microcin C ABC transp 100.0 2.1E-29 4.6E-34 218.6 10.2 145 8-163 280-468 (529)
274 PRK14261 phosphate ABC transpo 100.0 1.8E-29 3.9E-34 200.3 8.9 145 7-163 10-192 (253)
275 PRK14244 phosphate ABC transpo 100.0 1.5E-29 3.2E-34 200.6 8.2 144 8-163 10-192 (251)
276 TIGR02770 nickel_nikD nickel i 100.0 4.1E-29 8.9E-34 195.9 10.6 131 21-162 1-167 (230)
277 PRK14246 phosphate ABC transpo 100.0 6.5E-29 1.4E-33 198.1 11.9 145 7-163 14-196 (257)
278 PRK10261 glutathione transport 100.0 3.3E-29 7.2E-34 221.2 11.2 148 8-163 17-211 (623)
279 PRK14260 phosphate ABC transpo 100.0 2.4E-29 5.2E-34 200.5 9.3 144 8-163 12-193 (259)
280 PRK03695 vitamin B12-transport 100.0 6.1E-29 1.3E-33 197.2 11.3 132 21-163 11-176 (248)
281 PRK14238 phosphate transporter 100.0 3.1E-29 6.7E-34 201.3 9.7 144 8-163 29-210 (271)
282 PRK14271 phosphate ABC transpo 100.0 3E-29 6.4E-34 202.0 9.6 144 8-163 26-206 (276)
283 TIGR03269 met_CoM_red_A2 methy 100.0 3.3E-29 7.2E-34 216.9 10.6 140 8-162 5-210 (520)
284 TIGR03269 met_CoM_red_A2 methy 100.0 4.2E-29 9E-34 216.3 10.9 143 8-163 284-470 (520)
285 TIGR02633 xylG D-xylose ABC tr 100.0 6E-29 1.3E-33 214.3 11.7 144 8-162 262-445 (500)
286 cd03250 ABCC_MRP_domain1 Domai 100.0 9.8E-29 2.1E-33 190.3 11.6 143 8-161 5-168 (204)
287 PRK14265 phosphate ABC transpo 100.0 4E-29 8.6E-34 201.0 9.6 144 8-163 25-204 (274)
288 PRK14270 phosphate ABC transpo 100.0 5E-29 1.1E-33 197.6 9.9 144 8-163 9-190 (251)
289 PRK14258 phosphate ABC transpo 100.0 8.1E-29 1.8E-33 197.7 11.0 143 8-162 12-192 (261)
290 COG0411 LivG ABC-type branched 100.0 3E-29 6.5E-34 196.0 8.0 140 8-163 9-192 (250)
291 PRK14255 phosphate ABC transpo 100.0 4.3E-29 9.3E-34 197.9 9.0 144 8-163 10-191 (252)
292 PRK14236 phosphate transporter 100.0 1.2E-28 2.7E-33 197.8 11.6 144 8-163 30-211 (272)
293 TIGR02633 xylG D-xylose ABC tr 100.0 9.9E-29 2.1E-33 213.0 11.5 140 8-163 6-184 (500)
294 PRK10938 putative molybdenum t 100.0 6.8E-29 1.5E-33 213.6 9.8 142 8-163 265-444 (490)
295 TIGR01271 CFTR_protein cystic 100.0 1.4E-28 3E-33 233.6 12.4 149 7-163 1221-1396(1490)
296 COG4604 CeuD ABC-type enteroch 100.0 2.4E-29 5.2E-34 191.7 5.6 142 8-163 6-178 (252)
297 PRK09700 D-allose transporter 100.0 1.6E-28 3.4E-33 212.3 11.5 133 20-163 277-452 (510)
298 PRK14264 phosphate ABC transpo 100.0 1.5E-28 3.2E-33 200.5 10.1 144 8-163 50-243 (305)
299 PRK14263 phosphate ABC transpo 100.0 1.7E-28 3.6E-33 196.1 9.8 143 9-163 14-192 (261)
300 PRK14252 phosphate ABC transpo 100.0 1.7E-28 3.8E-33 196.1 9.5 144 8-163 21-204 (265)
301 COG5265 ATM1 ABC-type transpor 100.0 1E-28 2.2E-33 205.1 8.3 147 7-162 266-441 (497)
302 PRK14266 phosphate ABC transpo 100.0 1.7E-28 3.6E-33 194.4 9.0 144 8-163 8-189 (250)
303 PRK15064 ABC transporter ATP-b 100.0 1.7E-28 3.6E-33 213.1 9.4 136 8-163 6-198 (530)
304 TIGR00954 3a01203 Peroxysomal 100.0 2.1E-28 4.6E-33 217.3 9.3 138 8-162 456-624 (659)
305 PRK15064 ABC transporter ATP-b 99.9 3.6E-28 7.9E-33 210.9 9.7 139 8-163 324-481 (530)
306 cd03236 ABC_RNaseL_inhibitor_d 99.9 4.5E-28 9.8E-33 193.3 9.3 141 8-162 5-181 (255)
307 TIGR01257 rim_protein retinal- 99.9 6.9E-28 1.5E-32 231.3 11.8 144 8-163 933-1104(2272)
308 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 8.7E-28 1.9E-32 176.4 9.7 107 8-163 5-113 (144)
309 PF00005 ABC_tran: ABC transpo 99.9 4.6E-28 1E-32 175.0 7.9 121 22-149 1-137 (137)
310 PRK11819 putative ABC transpor 99.9 6.8E-28 1.5E-32 210.4 10.0 137 7-163 10-206 (556)
311 PRK11288 araG L-arabinose tran 99.9 1.1E-27 2.4E-32 206.6 11.2 133 20-163 267-439 (501)
312 PRK15439 autoinducer 2 ABC tra 99.9 1.1E-27 2.4E-32 207.2 11.1 132 21-163 278-446 (510)
313 PRK10762 D-ribose transporter 99.9 1.5E-27 3.3E-32 205.8 11.5 133 20-163 266-438 (501)
314 cd03222 ABC_RNaseL_inhibitor T 99.9 1.3E-27 2.9E-32 181.3 9.7 110 5-162 2-113 (177)
315 PRK13545 tagH teichoic acids e 99.9 5.5E-28 1.2E-32 208.0 8.3 144 8-163 26-186 (549)
316 PLN03232 ABC transporter C fam 99.9 1.4E-27 3.1E-32 226.8 12.0 141 8-161 619-781 (1495)
317 TIGR03771 anch_rpt_ABC anchore 99.9 9E-28 1.9E-32 187.7 8.7 126 27-163 1-156 (223)
318 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.6E-27 7.7E-32 174.8 11.1 110 8-162 4-122 (157)
319 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 5E-28 1.1E-32 211.1 7.4 139 8-163 327-486 (552)
320 PRK10982 galactose/methyl gala 99.9 2E-27 4.3E-32 204.6 10.9 133 20-163 262-434 (491)
321 PRK15177 Vi polysaccharide exp 99.9 6.7E-28 1.5E-32 187.4 7.0 132 20-162 1-146 (213)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.5E-27 3.3E-32 208.1 10.0 136 8-163 9-204 (552)
323 COG4136 ABC-type uncharacteriz 99.9 7.2E-28 1.6E-32 177.1 6.5 134 18-162 14-176 (213)
324 COG4172 ABC-type uncharacteriz 99.9 1E-27 2.3E-32 198.6 7.9 154 2-163 7-200 (534)
325 PLN03130 ABC transporter C fam 99.9 1.7E-27 3.6E-32 227.2 10.1 140 8-161 619-781 (1622)
326 PRK11819 putative ABC transpor 99.9 1E-27 2.3E-32 209.3 7.9 139 8-163 329-488 (556)
327 PRK10636 putative ABC transpor 99.9 2.7E-27 5.8E-32 209.6 10.2 140 8-163 317-473 (638)
328 PLN03073 ABC transporter F fam 99.9 2.6E-27 5.5E-32 211.8 10.1 140 8-162 513-669 (718)
329 TIGR01257 rim_protein retinal- 99.9 2.7E-27 5.9E-32 227.2 10.9 144 8-163 1942-2113(2272)
330 PRK13409 putative ATPase RIL; 99.9 1.9E-27 4.2E-32 208.8 9.1 137 8-163 345-496 (590)
331 PRK10636 putative ABC transpor 99.9 8.8E-28 1.9E-32 212.7 6.7 142 8-163 6-192 (638)
332 PRK13546 teichoic acids export 99.9 1.9E-27 4.1E-32 190.6 7.7 128 18-162 36-185 (264)
333 PRK10535 macrolide transporter 99.9 9.1E-27 2E-31 206.6 12.2 144 7-163 8-187 (648)
334 COG1129 MglA ABC-type sugar tr 99.9 1.3E-26 2.8E-31 197.8 12.1 142 8-163 13-188 (500)
335 PLN03211 ABC transporter G-25; 99.9 6.2E-27 1.4E-31 207.8 10.4 140 10-163 75-249 (659)
336 COG4152 ABC-type uncharacteriz 99.9 3.6E-27 7.7E-32 184.7 7.8 134 18-162 14-172 (300)
337 COG4148 ModC ABC-type molybdat 99.9 1.9E-27 4.1E-32 189.3 5.9 128 24-162 16-170 (352)
338 PRK11147 ABC transporter ATPas 99.9 2E-27 4.3E-32 210.4 6.6 141 7-163 7-199 (635)
339 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.7E-26 3.7E-31 186.7 11.2 130 19-161 50-200 (282)
340 PRK13409 putative ATPase RIL; 99.9 9.2E-27 2E-31 204.5 10.0 142 8-163 78-255 (590)
341 PRK11147 ABC transporter ATPas 99.9 7.9E-27 1.7E-31 206.5 8.6 139 8-162 324-482 (635)
342 COG4133 CcmA ABC-type transpor 99.9 1.9E-26 4E-31 174.3 9.2 134 18-162 14-172 (209)
343 cd03270 ABC_UvrA_I The excisio 99.9 3.1E-26 6.7E-31 179.6 10.7 136 18-163 7-182 (226)
344 TIGR00955 3a01204 The Eye Pigm 99.9 6.2E-26 1.3E-30 200.3 10.9 135 18-163 37-209 (617)
345 cd03278 ABC_SMC_barmotin Barmo 99.9 7.8E-26 1.7E-30 174.1 10.0 133 20-163 10-160 (197)
346 PLN03073 ABC transporter F fam 99.9 2.1E-26 4.6E-31 205.9 7.8 143 8-163 182-387 (718)
347 COG4107 PhnK ABC-type phosphon 99.9 5.2E-26 1.1E-30 171.0 8.5 143 8-163 11-194 (258)
348 COG0488 Uup ATPase components 99.9 3.2E-26 6.9E-31 198.2 8.2 138 8-162 8-195 (530)
349 TIGR00956 3a01205 Pleiotropic 99.9 7E-26 1.5E-30 214.1 10.6 143 8-163 764-945 (1394)
350 COG4586 ABC-type uncharacteriz 99.9 4.8E-26 1E-30 180.7 7.4 135 18-163 36-199 (325)
351 TIGR00957 MRP_assoc_pro multi 99.9 3.4E-25 7.3E-30 211.0 13.2 140 8-162 641-802 (1522)
352 COG4778 PhnL ABC-type phosphon 99.9 5.1E-26 1.1E-30 170.2 5.7 148 6-163 9-195 (235)
353 PLN03140 ABC transporter G fam 99.9 3.1E-25 6.6E-30 210.0 11.2 132 19-163 893-1062(1470)
354 COG1101 PhnK ABC-type uncharac 99.9 3.4E-25 7.5E-30 170.8 8.2 149 6-161 6-189 (263)
355 COG4167 SapF ABC-type antimicr 99.9 3.4E-25 7.4E-30 167.7 7.6 150 6-162 9-191 (267)
356 TIGR01187 potA spermidine/putr 99.9 1.3E-25 2.9E-30 184.6 5.6 112 38-163 1-143 (325)
357 COG3845 ABC-type uncharacteriz 99.9 1.1E-24 2.4E-29 183.9 10.8 140 8-162 9-182 (501)
358 COG0396 sufC Cysteine desulfur 99.9 8.6E-25 1.9E-29 169.8 9.1 133 19-161 17-185 (251)
359 TIGR01271 CFTR_protein cystic 99.9 3.1E-24 6.7E-29 204.0 12.0 131 19-161 439-589 (1490)
360 PTZ00243 ABC transporter; Prov 99.9 1.7E-24 3.7E-29 206.3 9.1 131 18-161 672-823 (1560)
361 TIGR00956 3a01205 Pleiotropic 99.9 2.6E-24 5.5E-29 203.5 9.5 135 18-163 73-252 (1394)
362 KOG0061|consensus 99.9 3.1E-24 6.7E-29 189.2 9.0 135 18-162 42-212 (613)
363 COG4674 Uncharacterized ABC-ty 99.9 1.2E-24 2.5E-29 165.9 4.5 139 8-162 10-189 (249)
364 KOG0054|consensus 99.9 2.9E-23 6.2E-28 193.1 13.3 145 8-162 1143-1317(1381)
365 COG0488 Uup ATPase components 99.9 7.1E-24 1.5E-28 183.6 8.2 139 8-162 326-481 (530)
366 PLN03140 ABC transporter G fam 99.9 4.3E-24 9.3E-29 202.2 6.9 139 18-163 177-379 (1470)
367 cd03271 ABC_UvrA_II The excisi 99.9 1.7E-22 3.6E-27 161.8 10.3 63 96-163 152-215 (261)
368 cd03279 ABC_sbcCD SbcCD and ot 99.9 4.3E-23 9.4E-28 160.3 6.2 139 23-162 18-175 (213)
369 KOG0927|consensus 99.9 1E-22 2.2E-27 173.5 8.1 144 7-163 393-552 (614)
370 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5.1E-22 1.1E-26 156.4 11.2 53 110-162 152-204 (243)
371 COG4178 ABC-type uncharacteriz 99.9 2E-22 4.4E-27 175.2 7.8 137 18-162 405-557 (604)
372 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.1E-21 4.6E-26 149.6 11.9 134 19-162 9-155 (198)
373 KOG0054|consensus 99.9 7.4E-22 1.6E-26 183.8 10.9 143 7-161 522-684 (1381)
374 cd03274 ABC_SMC4_euk Eukaryoti 99.9 6.4E-22 1.4E-26 154.0 8.8 56 107-162 118-173 (212)
375 KOG0059|consensus 99.9 6.3E-22 1.4E-26 180.7 8.9 143 8-163 569-741 (885)
376 KOG0927|consensus 99.9 9.9E-22 2.1E-26 167.5 7.7 142 8-162 80-263 (614)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6.3E-21 1.4E-25 151.4 11.2 55 108-162 158-212 (251)
378 KOG0062|consensus 99.8 7.8E-22 1.7E-26 167.3 5.0 135 18-161 92-239 (582)
379 COG1134 TagH ABC-type polysacc 99.8 2.3E-21 5E-26 151.9 6.5 133 16-159 37-186 (249)
380 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.7E-20 3.8E-25 148.7 6.6 52 111-162 150-201 (247)
381 cd03240 ABC_Rad50 The catalyti 99.8 1.4E-19 3.1E-24 139.9 9.2 132 22-162 13-164 (204)
382 KOG0060|consensus 99.8 1.1E-19 2.3E-24 156.1 7.4 144 9-161 439-611 (659)
383 COG1245 Predicted ATPase, RNas 99.8 1.4E-19 3E-24 152.3 7.3 141 8-161 340-496 (591)
384 KOG0066|consensus 99.8 3.4E-19 7.4E-24 149.8 8.4 138 8-162 591-746 (807)
385 COG4615 PvdE ABC-type sideroph 99.8 6.2E-19 1.3E-23 146.4 9.4 142 8-161 327-489 (546)
386 TIGR00630 uvra excinuclease AB 99.8 1.2E-18 2.5E-23 159.1 10.3 54 109-163 821-874 (924)
387 cd03239 ABC_SMC_head The struc 99.8 3E-18 6.4E-23 130.1 10.6 46 117-162 95-140 (178)
388 COG4170 SapD ABC-type antimicr 99.8 1.6E-19 3.6E-24 139.6 3.2 140 17-163 18-201 (330)
389 PRK00349 uvrA excinuclease ABC 99.8 1.1E-17 2.3E-22 153.1 13.3 51 109-163 823-876 (943)
390 PRK00635 excinuclease ABC subu 99.7 7.5E-18 1.6E-22 160.6 12.0 56 107-163 799-855 (1809)
391 cd03277 ABC_SMC5_euk Eukaryoti 99.7 3E-18 6.5E-23 133.5 7.6 54 109-162 119-172 (213)
392 COG1245 Predicted ATPase, RNas 99.7 2.9E-18 6.3E-23 144.4 6.9 140 9-162 80-255 (591)
393 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.5E-18 5.3E-23 132.4 5.4 113 21-160 16-130 (200)
394 KOG0065|consensus 99.7 2.7E-18 5.8E-23 158.2 3.5 139 17-162 802-972 (1391)
395 KOG0062|consensus 99.7 1.6E-17 3.4E-22 141.3 6.1 141 8-161 367-523 (582)
396 COG4138 BtuD ABC-type cobalami 99.7 6.6E-18 1.4E-22 127.3 2.7 135 20-161 13-173 (248)
397 KOG0064|consensus 99.7 1E-17 2.2E-22 143.1 3.6 134 19-162 495-654 (728)
398 COG1129 MglA ABC-type sugar tr 99.7 1.9E-16 4.1E-21 135.7 9.0 133 21-163 274-444 (500)
399 cd03227 ABC_Class2 ABC-type Cl 99.7 2.1E-16 4.5E-21 117.9 6.9 47 116-162 77-123 (162)
400 cd03241 ABC_RecN RecN ATPase i 99.6 6.2E-16 1.3E-20 124.6 9.4 49 114-162 168-216 (276)
401 KOG2355|consensus 99.6 3E-16 6.5E-21 121.0 6.9 143 6-163 16-190 (291)
402 cd03285 ABC_MSH2_euk MutS2 hom 99.6 5E-15 1.1E-19 116.0 8.8 112 19-158 17-132 (222)
403 cd03243 ABC_MutS_homologs The 99.6 3.8E-15 8.3E-20 114.7 7.3 112 22-160 19-130 (202)
404 cd03282 ABC_MSH4_euk MutS4 hom 99.6 5.4E-15 1.2E-19 114.5 7.3 114 18-158 15-128 (204)
405 COG2401 ABC-type ATPase fused 99.6 3.5E-15 7.6E-20 124.9 6.6 133 19-161 396-548 (593)
406 PF02463 SMC_N: RecF/RecN/SMC 99.6 6.7E-15 1.5E-19 114.2 7.2 49 115-163 135-183 (220)
407 KOG0063|consensus 99.5 3.3E-15 7.1E-20 125.4 4.4 137 9-158 341-494 (592)
408 KOG0066|consensus 99.5 4.1E-15 9E-20 125.4 2.5 137 10-156 269-448 (807)
409 cd03242 ABC_RecF RecF is a rec 99.5 4.7E-14 1E-18 113.3 7.2 50 114-163 181-235 (270)
410 cd03283 ABC_MutS-like MutS-lik 99.5 2.1E-13 4.5E-18 105.2 8.8 112 18-159 13-126 (199)
411 COG0178 UvrA Excinuclease ATPa 99.4 2E-12 4.4E-17 115.2 10.0 54 109-163 815-868 (935)
412 smart00534 MUTSac ATPase domai 99.4 3.6E-13 7.8E-18 102.5 3.9 48 107-159 52-99 (185)
413 COG3845 ABC-type uncharacteriz 99.4 3.9E-12 8.3E-17 108.2 9.9 135 18-162 270-445 (501)
414 KOG0065|consensus 99.4 5.4E-13 1.2E-17 123.7 4.9 139 18-162 127-302 (1391)
415 TIGR01069 mutS2 MutS2 family p 99.3 1.6E-12 3.5E-17 117.6 6.7 114 19-159 303-423 (771)
416 PRK00349 uvrA excinuclease ABC 99.3 4.3E-12 9.3E-17 116.7 5.9 52 110-163 483-534 (943)
417 PTZ00132 GTP-binding nuclear p 99.3 1.6E-11 3.4E-16 95.0 8.2 45 115-163 149-200 (215)
418 TIGR00630 uvra excinuclease AB 99.3 5.7E-12 1.2E-16 115.7 6.5 52 110-163 481-532 (924)
419 cd03284 ABC_MutS1 MutS1 homolo 99.3 9.1E-12 2E-16 97.2 5.9 104 19-155 18-129 (216)
420 cd03281 ABC_MSH5_euk MutS5 hom 99.2 3.3E-11 7.2E-16 93.8 6.2 34 119-156 93-126 (213)
421 PRK00635 excinuclease ABC subu 99.2 3.8E-11 8.2E-16 115.5 6.5 50 110-163 470-521 (1809)
422 KOG0063|consensus 99.1 2.4E-11 5.3E-16 102.3 3.8 120 30-159 97-252 (592)
423 PRK00409 recombination and DNA 99.1 6.6E-11 1.4E-15 107.4 4.0 110 24-160 318-429 (782)
424 cd00820 PEPCK_HprK Phosphoenol 99.0 1.3E-10 2.8E-15 81.3 2.7 35 19-55 2-36 (107)
425 PRK08533 flagellar accessory p 99.0 1.1E-09 2.4E-14 86.2 7.7 116 30-162 21-145 (230)
426 TIGR02168 SMC_prok_B chromosom 99.0 4.3E-10 9.4E-15 104.7 5.1 65 98-162 1071-1135(1179)
427 TIGR02169 SMC_prok_A chromosom 99.0 5.9E-10 1.3E-14 104.1 4.8 65 99-163 1057-1121(1164)
428 COG3910 Predicted ATPase [Gene 99.0 3.8E-09 8.3E-14 80.7 8.2 138 12-162 18-170 (233)
429 TIGR00634 recN DNA repair prot 98.9 9.3E-10 2E-14 96.8 5.4 49 115-163 439-487 (563)
430 cd03287 ABC_MSH3_euk MutS3 hom 98.9 3.1E-09 6.7E-14 83.4 7.8 37 19-58 18-54 (222)
431 PRK10869 recombination and rep 98.9 1.3E-09 2.8E-14 95.7 5.8 48 115-162 429-476 (553)
432 PHA02562 46 endonuclease subun 98.9 1.4E-09 3E-14 95.1 4.8 52 112-163 464-522 (562)
433 cd01128 rho_factor Transcripti 98.9 3.9E-09 8.5E-14 84.2 6.8 127 21-156 6-171 (249)
434 cd03286 ABC_MSH6_euk MutS6 hom 98.8 1.1E-08 2.4E-13 80.0 7.5 39 18-59 16-54 (218)
435 cd01124 KaiC KaiC is a circadi 98.8 1.8E-08 3.9E-13 75.7 7.1 51 108-161 63-121 (187)
436 TIGR03238 dnd_assoc_3 dnd syst 98.8 3.5E-09 7.7E-14 90.8 3.3 31 20-53 20-50 (504)
437 TIGR00618 sbcc exonuclease Sbc 98.8 7.9E-09 1.7E-13 96.7 5.8 56 108-163 942-1003(1042)
438 PRK13695 putative NTPase; Prov 98.8 1.1E-08 2.3E-13 76.9 5.5 47 111-161 73-121 (174)
439 PRK10246 exonuclease subunit S 98.8 9.2E-09 2E-13 96.2 6.0 54 110-163 943-1000(1047)
440 TIGR00606 rad50 rad50. This fa 98.8 8.7E-09 1.9E-13 98.3 5.4 45 113-161 1196-1246(1311)
441 KOG0018|consensus 98.7 7.8E-09 1.7E-13 94.2 3.8 82 82-163 1017-1098(1141)
442 PRK03918 chromosome segregatio 98.7 1.8E-08 4E-13 92.3 4.9 54 109-162 781-836 (880)
443 PRK01156 chromosome segregatio 98.7 2.4E-08 5.2E-13 92.0 5.5 48 111-162 796-849 (895)
444 PRK06793 fliI flagellum-specif 98.7 1.2E-07 2.6E-12 81.0 8.8 116 19-156 144-264 (432)
445 smart00382 AAA ATPases associa 98.6 7.8E-07 1.7E-11 61.9 9.7 99 32-159 1-99 (148)
446 PF13558 SbcCD_C: Putative exo 98.5 5.1E-08 1.1E-12 66.1 2.4 53 111-163 27-88 (90)
447 TIGR02858 spore_III_AA stage I 98.5 3.4E-07 7.3E-12 73.9 7.2 26 34-61 112-137 (270)
448 PRK00064 recF recombination pr 98.5 1.3E-07 2.7E-12 79.2 4.9 49 114-162 271-324 (361)
449 TIGR00611 recf recF protein. A 98.5 1.1E-07 2.4E-12 79.7 4.5 49 115-163 274-327 (365)
450 TIGR02680 conserved hypothetic 98.5 1.6E-07 3.5E-12 89.9 5.8 54 110-163 1241-1302(1353)
451 cd02023 UMPK Uridine monophosp 98.5 1.1E-07 2.4E-12 72.6 3.7 42 107-155 74-115 (198)
452 PRK06067 flagellar accessory p 98.4 6.5E-07 1.4E-11 70.2 6.1 114 20-152 12-134 (234)
453 COG1196 Smc Chromosome segrega 98.3 4.2E-07 9.1E-12 86.1 4.6 70 94-163 1044-1113(1163)
454 PRK14079 recF recombination pr 98.3 6.7E-07 1.4E-11 74.6 4.9 48 115-162 262-314 (349)
455 TIGR00767 rho transcription te 98.3 7.3E-07 1.6E-11 75.4 4.8 44 7-54 134-188 (415)
456 PRK02224 chromosome segregatio 98.3 6.1E-07 1.3E-11 82.5 4.5 51 112-162 777-835 (880)
457 PF13555 AAA_29: P-loop contai 98.3 1.1E-06 2.3E-11 55.6 4.2 36 22-59 12-48 (62)
458 cd01120 RecA-like_NTPases RecA 98.3 3.7E-06 7.9E-11 60.8 7.6 32 118-153 69-100 (165)
459 cd01125 repA Hexameric Replica 98.3 8.6E-07 1.9E-11 69.8 4.5 23 33-56 1-23 (239)
460 PRK06995 flhF flagellar biosyn 98.2 3.7E-06 8.1E-11 72.8 7.8 37 20-58 244-280 (484)
461 KOG0933|consensus 98.1 8.8E-07 1.9E-11 80.8 0.6 67 96-162 1062-1128(1174)
462 PRK09825 idnK D-gluconate kina 98.1 4E-06 8.6E-11 63.4 4.1 28 32-61 2-29 (176)
463 PRK07196 fliI flagellum-specif 98.1 2.6E-06 5.5E-11 72.9 3.2 40 18-61 142-181 (434)
464 cd01131 PilT Pilus retraction 98.0 1.2E-05 2.7E-10 61.7 6.2 24 35-59 3-26 (198)
465 COG0419 SbcC ATPase involved i 98.0 5.8E-06 1.2E-10 76.7 5.0 53 111-163 810-866 (908)
466 KOG0964|consensus 98.0 1.4E-06 3.1E-11 79.2 0.9 52 112-163 1093-1144(1200)
467 PRK06002 fliI flagellum-specif 98.0 5.3E-06 1.1E-10 71.2 4.3 49 7-61 143-191 (450)
468 KOG0996|consensus 98.0 1.4E-06 3.1E-11 80.5 0.8 68 95-162 1174-1241(1293)
469 TIGR00235 udk uridine kinase. 98.0 3.7E-06 8E-11 64.8 2.8 25 31-56 4-28 (207)
470 cd01130 VirB11-like_ATPase Typ 98.0 2.9E-06 6.3E-11 64.5 1.8 38 21-61 14-51 (186)
471 PRK10078 ribose 1,5-bisphospho 98.0 5.4E-06 1.2E-10 62.9 3.2 25 33-59 2-26 (186)
472 PRK15494 era GTPase Era; Provi 97.9 8.8E-06 1.9E-10 67.6 4.0 47 7-57 22-75 (339)
473 PF13304 AAA_21: AAA domain; P 97.9 1.9E-05 4.2E-10 60.0 5.2 48 113-162 233-281 (303)
474 PRK08149 ATP synthase SpaL; Va 97.9 9.8E-06 2.1E-10 69.3 3.5 40 18-61 138-177 (428)
475 cd01136 ATPase_flagellum-secre 97.9 1.6E-05 3.5E-10 65.8 4.5 40 18-61 56-95 (326)
476 PF13476 AAA_23: AAA domain; P 97.9 8.7E-06 1.9E-10 61.2 2.7 35 21-58 9-43 (202)
477 TIGR03015 pepcterm_ATPase puta 97.9 2.1E-06 4.4E-11 68.2 -0.9 48 8-57 18-66 (269)
478 PRK00300 gmk guanylate kinase; 97.9 1.3E-05 2.7E-10 61.4 3.3 26 31-57 3-28 (205)
479 TIGR03263 guanyl_kin guanylate 97.8 1.5E-05 3.3E-10 59.7 3.1 23 33-56 1-23 (180)
480 TIGR01420 pilT_fam pilus retra 97.8 6.4E-05 1.4E-09 62.5 6.9 28 31-59 120-147 (343)
481 PRK07721 fliI flagellum-specif 97.8 1.9E-05 4.2E-10 67.7 3.7 40 18-61 145-184 (438)
482 TIGR02322 phosphon_PhnN phosph 97.8 1.8E-05 3.8E-10 59.4 3.1 23 33-56 1-23 (179)
483 PRK08972 fliI flagellum-specif 97.8 2.3E-05 5E-10 67.1 3.9 39 19-61 150-188 (444)
484 PRK05688 fliI flagellum-specif 97.8 2.3E-05 5E-10 67.4 3.9 40 18-61 155-194 (451)
485 PRK07594 type III secretion sy 97.8 1.9E-05 4.2E-10 67.6 3.4 40 18-61 142-181 (433)
486 PRK14722 flhF flagellar biosyn 97.7 2.4E-05 5.2E-10 65.9 3.4 36 19-56 124-159 (374)
487 PRK00454 engB GTP-binding prot 97.7 0.00017 3.6E-09 54.3 7.6 45 111-162 142-188 (196)
488 TIGR02546 III_secr_ATP type II 97.7 3.2E-05 7E-10 66.1 4.0 40 18-61 132-171 (422)
489 TIGR03496 FliI_clade1 flagella 97.7 3.1E-05 6.6E-10 66.0 3.8 39 19-61 125-163 (411)
490 cd01876 YihA_EngB The YihA (En 97.7 0.00014 3E-09 52.4 6.7 48 112-163 118-166 (170)
491 COG0178 UvrA Excinuclease ATPa 97.7 4.4E-05 9.5E-10 69.2 4.6 51 110-162 475-525 (935)
492 PRK09099 type III secretion sy 97.7 4.1E-05 9E-10 65.7 4.3 40 18-61 150-189 (441)
493 PRK06936 type III secretion sy 97.7 4E-05 8.7E-10 65.7 4.1 40 18-61 149-188 (439)
494 PRK14723 flhF flagellar biosyn 97.7 2.7E-05 5.9E-10 70.7 3.1 35 20-56 173-207 (767)
495 TIGR01026 fliI_yscN ATPase Fli 97.7 3E-05 6.4E-10 66.6 3.2 40 18-61 150-189 (440)
496 PRK13830 conjugal transfer pro 97.7 5.8E-05 1.3E-09 69.5 5.2 26 137-162 651-677 (818)
497 TIGR02903 spore_lon_C ATP-depe 97.7 0.00011 2.3E-09 65.7 6.8 21 141-162 268-288 (615)
498 cd00009 AAA The AAA+ (ATPases 97.7 0.00022 4.7E-09 50.0 7.1 25 32-57 18-42 (151)
499 TIGR02655 circ_KaiC circadian 97.6 2.1E-06 4.6E-11 74.5 -4.4 96 30-131 18-130 (484)
500 TIGR03185 DNA_S_dndD DNA sulfu 97.6 9.1E-05 2E-09 66.5 5.8 48 113-161 548-597 (650)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-41 Score=258.06 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=113.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--c--ccc------cCHHHHHHhcc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--T--IRS------LGLEDLRSMAL 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~--i~~------~~~~~~~~~~~ 77 (163)
+++..|. +..+|+|||++ |.+||+++|+| ||||||||| ++++.++..+. . +.+ .+...+|++++
T Consensus 7 ~l~K~fg---~~~VLkgi~l~-v~~Gevv~iiG-pSGSGKSTl-LRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 7 NLSKSFG---DKEVLKGISLS-VEKGEVVVIIG-PSGSGKSTL-LRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eeeEEeC---CeEEecCccee-EcCCCEEEEEC-CCCCCHHHH-HHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 5667775 36899999999 99999999999 999999999 78889998871 1 111 15667888885
Q ss_pred ccCCCcccccCCC---------------------CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 78 AQNQSAQAFLGPE---------------------NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 78 ~q~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+..|..++|.... ....++++.+|+ .++.+.||.+||||||||||||||||
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL----~~ka~~yP~qLSGGQqQRVAIARALa---- 152 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGL----ADKADAYPAQLSGGQQQRVAIARALA---- 152 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCc----hhhhhhCccccCcHHHHHHHHHHHHc----
Confidence 5555446663110 011237888888 89999999999999999999999998
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|+++++|||||||||+...++.+.
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~v 178 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDV 178 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHH
Confidence 56999999999999999999998775
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=256.14 Aligned_cols=144 Identities=23% Similarity=0.253 Sum_probs=115.1
Q ss_pred cceeeCCCC--CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccc---cccCHHHHH
Q psy17517 8 AQAFLGPEN--PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATI---RSLGLEDLR 73 (163)
Q Consensus 8 ~~~f~y~~~--~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i---~~~~~~~~~ 73 (163)
++++.|+.. +..++++||||+ |++||+++|+| .|||||||| ++++.++..| .++ ++..++..|
T Consensus 6 ~vsK~~~~~~~~~~~al~~vsL~-I~~GeI~GIIG-~SGAGKSTL-iR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R 82 (339)
T COG1135 6 NVSKTFGQTGTGTVTALDDVSLE-IPKGEIFGIIG-YSGAGKSTL-LRLINLLERPTSGSVFVDGQDLTALSEAELRQLR 82 (339)
T ss_pred eeeeeeccCCCCceeeeccceEE-EcCCcEEEEEc-CCCCcHHHH-HHHHhccCCCCCceEEEcCEecccCChHHHHHHH
Confidence 456667642 245799999999 99999999999 999999999 8899999988 233 344556677
Q ss_pred Hhc--cccCCC---------cccccCCC----------CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 74 SMA--LAQNQS---------AQAFLGPE----------NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 74 ~~~--~~q~~~---------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
+++ +||++. |..| +++ .+..++++.+|+ .++.++||.+|||||||||+||||||
T Consensus 83 ~~IGMIFQhFnLLssrTV~~NvA~-PLeiag~~k~ei~~RV~elLelVgL----~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 83 QKIGMIFQHFNLLSSRTVFENVAF-PLELAGVPKAEIKQRVAELLELVGL----SDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred hhccEEeccccccccchHHhhhhh-hHhhcCCCHHHHHHHHHHHHHHcCC----hhhhccCchhcCcchhhHHHHHHHHh
Confidence 776 777762 2222 111 112347778888 89999999999999999999999997
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|++|++|||||||||++...|.++|
T Consensus 158 ----~~P~iLL~DEaTSALDP~TT~sIL~LL 184 (339)
T COG1135 158 ----NNPKILLCDEATSALDPETTQSILELL 184 (339)
T ss_pred ----cCCCEEEecCccccCChHHHHHHHHHH
Confidence 789999999999999999999888754
No 3
>KOG0058|consensus
Probab=100.00 E-value=1.2e-37 Score=271.30 Aligned_cols=149 Identities=21% Similarity=0.232 Sum_probs=119.3
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|.||+.++.++|+|+||+ |+|||.+|+|| |||+||||+ ..++..+++| .++++.+...+|+++.
T Consensus 469 ~~VsFaYP~Rp~~~Vlk~lsft-i~pGe~vALVG-PSGsGKSTi-asLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig 545 (716)
T KOG0058|consen 469 EDVSFAYPTRPDVPVLKNLSFT-IRPGEVVALVG-PSGSGKSTI-ASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG 545 (716)
T ss_pred EEeeeecCCCCCchhhcCceee-eCCCCEEEEEC-CCCCCHHHH-HHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee
Confidence 4799999999999999999999 99999999999 999999999 6788889988 4678888889999984
Q ss_pred ccCCCcccc----------cCCCCCchhHHHhchhcc----------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF----------LGPENPEEPYLQGVNYNC----------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~----------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++.|+..+| .......+++........ +-+...++++.+||||||||+|||||| ++
T Consensus 546 ~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL----lr 621 (716)
T KOG0058|consen 546 LVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL----LR 621 (716)
T ss_pred eeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH----hc
Confidence 444444444 223333444333332211 113456788999999999999999999 58
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|.+|||||.|||||.+++..+.+.
T Consensus 622 ~P~VLILDEATSALDaeSE~lVq~a 646 (716)
T KOG0058|consen 622 NPRVLILDEATSALDAESEYLVQEA 646 (716)
T ss_pred CCCEEEEechhhhcchhhHHHHHHH
Confidence 9999999999999999999888764
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-38 Score=246.05 Aligned_cols=140 Identities=21% Similarity=0.170 Sum_probs=110.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHHHH--HHhccccCC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLEDL--RSMALAQNQ 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~~~--~~~~~~q~~ 81 (163)
+++..|++ ..+|+||||+ |.+||+++|+| ||||||||| +++++|+..| +. +.+.+...- ...++||++
T Consensus 8 ~v~~~f~~---~~vl~~i~L~-v~~GEfvsilG-pSGcGKSTL-LriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 8 GVSKSFGG---VEVLEDINLS-VEKGEFVAILG-PSGCGKSTL-LRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eeEEEeCc---eEEeccceeE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 56667764 6899999999 99999999999 999999999 8899999988 22 333332221 223478876
Q ss_pred ---------CcccccCCCC----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 82 ---------SAQAFLGPEN----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 82 ---------~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
+|..+ +.+. ..+++++.+|+ .+..+++|.+|||||||||||||||+ .+|++|
T Consensus 82 ~LlPW~Tv~~NV~l-~l~~~~~~~~e~~~~a~~~L~~VgL----~~~~~~~P~qLSGGMrQRVaiARAL~----~~P~lL 152 (248)
T COG1116 82 ALLPWLTVLDNVAL-GLELRGKSKAEARERAKELLELVGL----AGFEDKYPHQLSGGMRQRVAIARALA----TRPKLL 152 (248)
T ss_pred cccchhhHHhhhee-hhhccccchHhHHHHHHHHHHHcCC----cchhhcCccccChHHHHHHHHHHHHh----cCCCEE
Confidence 22222 2111 12347888888 89999999999999999999999996 789999
Q ss_pred EeecccCCCCHHHHHHHHhh
Q psy17517 143 VLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~ 162 (163)
+||||+++||..++.++++.
T Consensus 153 LlDEPFgALDalTR~~lq~~ 172 (248)
T COG1116 153 LLDEPFGALDALTREELQDE 172 (248)
T ss_pred EEcCCcchhhHHHHHHHHHH
Confidence 99999999999999998875
No 5
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-38 Score=240.47 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=116.1
Q ss_pred CccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--------------cccc--ccCH
Q psy17517 6 QSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--------------ATIR--SLGL 69 (163)
Q Consensus 6 ~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--------------~~i~--~~~~ 69 (163)
-.+.+|.|. ++++|+|||++ |++++++|++| ||||||||| ++.+.++.+. .++. ..+.
T Consensus 10 ~~~l~~yYg---~~~aL~~i~l~-i~~~~VTAlIG-PSGcGKST~-LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 10 VRDLNLYYG---DKHALKDINLD-IPKNKVTALIG-PSGCGKSTL-LRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ecceeEEEC---chhhhccCcee-ccCCceEEEEC-CCCcCHHHH-HHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 347888996 47899999999 99999999999 999999999 6667766644 2333 3567
Q ss_pred HHHHHhc--cccCCC--------ccccc----CCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 70 EDLRSMA--LAQNQS--------AQAFL----GPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 70 ~~~~~~~--~~q~~~--------~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
.++|+++ |||.|. |..|. +..+ ..+..++...+|.+-++.+++.+..||||||||+|||||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 7889887 888772 33331 1111 123456677788777888999999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|| -+|++|+||||||||||.+..+|-++
T Consensus 164 lA----v~PeVlLmDEPtSALDPIsT~kIEeL 191 (253)
T COG1117 164 LA----VKPEVLLMDEPTSALDPISTLKIEEL 191 (253)
T ss_pred Hh----cCCcEEEecCcccccCchhHHHHHHH
Confidence 98 57999999999999999998887664
No 6
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.1e-37 Score=244.79 Aligned_cols=142 Identities=25% Similarity=0.325 Sum_probs=114.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+.+|.|+ ++++++|+||+ +++||+++|+| ||||||||| ++.+.++..| .++..++..++.+++
T Consensus 7 ~ls~~y~---~~~il~~ls~~-i~~G~i~~iiG-pNG~GKSTL-Lk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 7 NLSFGYG---GKPILDDLSFS-IPKGEITGILG-PNGSGKSTL-LKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred EEEEEEC---CeeEEecceEE-ecCCcEEEEEC-CCCCCHHHH-HHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 6789997 37899999999 99999999999 999999999 6777887776 356777888888887
Q ss_pred cccCCCcccc--------c---------C-CCCCc----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 77 LAQNQSAQAF--------L---------G-PENPE----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 77 ~~q~~~~~~~--------~---------~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
+.|.+..... . . ....+ +++++.+++ .+.+++.+.+|||||||||.|||||+
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~----~~la~r~~~~LSGGerQrv~iArALa-- 154 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGL----EHLADRPVDELSGGERQRVLIARALA-- 154 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCc----HHHhcCcccccChhHHHHHHHHHHHh--
Confidence 5554311111 0 1 01111 224677777 88999999999999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|++++|||||++||..++.++++++
T Consensus 155 --Q~~~iLLLDEPTs~LDi~~Q~evl~ll 181 (258)
T COG1120 155 --QETPILLLDEPTSHLDIAHQIEVLELL 181 (258)
T ss_pred --cCCCEEEeCCCccccCHHHHHHHHHHH
Confidence 889999999999999999999998864
No 7
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-37 Score=243.48 Aligned_cols=143 Identities=27% Similarity=0.318 Sum_probs=118.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--c--ccc------cCHHHHHHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--T--IRS------LGLEDLRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~--i~~------~~~~~~~~~~- 76 (163)
+.+|.|+++ .++++++|++ |++||+++++| +|||||||| ++++.|+..|. . +.+ .+..++|+++
T Consensus 8 ~l~~~y~~~--~~~l~~v~~~-i~~Ge~~~i~G-~nGsGKSTL-~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 8 NLSFRYPGR--KAALKDVSLE-IEKGERVLLIG-PNGSGKSTL-LKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred EEEEEcCCC--ceeeeeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 678999864 7899999999 99999999999 999999999 77888888872 2 222 3356778776
Q ss_pred -cccCCCccccc---------CCCCC----------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 -LAQNQSAQAFL---------GPENP----------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 -~~q~~~~~~~~---------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||+|++++|. ++.+. ..++++.+++ .+.+++.+.+||||||||||||.+|+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl----~~~~~r~p~~LSGGqkqRvaIA~vLa---- 154 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGL----EELLDRPPFNLSGGQKQRVAIAGVLA---- 154 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCc----hhhccCCccccCCcceeeHHhhHHHH----
Confidence 99999999983 22221 1235666677 78899999999999999999999998
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|++++||||||+||+.+++++++++
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l 181 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELL 181 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 569999999999999999999998753
No 8
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.7e-37 Score=237.85 Aligned_cols=143 Identities=21% Similarity=0.264 Sum_probs=107.1
Q ss_pred cceeeCCCC-CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccC---HHHHHH
Q psy17517 8 AQAFLGPEN-PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLG---LEDLRS 74 (163)
Q Consensus 8 ~~~f~y~~~-~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~---~~~~~~ 74 (163)
++...|..+ ...++|++|||+ |++||+++|+| ||||||||| +++++++..| .++...+ ...+|+
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~-i~~Ge~vaI~G-pSGSGKSTL-Lniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLE-IEAGEFVAIVG-PSGSGKSTL-LNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred eeEEEeccCCcceEecccceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence 344455432 125799999999 99999999999 999999999 8899999988 2344443 344555
Q ss_pred h-c--cccCCCccccc---------------CCCC-----CchhHHHhchhcccCCCccC-CCCCCCCHHHHHHHHHHHH
Q psy17517 75 M-A--LAQNQSAQAFL---------------GPEN-----PEEPYLQGVNYNCVAPGKRF-QPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 75 ~-~--~~q~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~LSgGqkQrvaiAra 130 (163)
+ + +||+. .+.. .... ..+.+++.+++ .+... .+|.+||||||||||||||
T Consensus 83 ~~iGfvFQ~~--nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl----~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 83 KKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGL----EDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HhEEEECccC--CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCC----hhhhccCCchhcCHHHHHHHHHHHH
Confidence 5 4 55554 2321 1111 11235566676 65555 8899999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ ++|++++.||||++||.++..++++++
T Consensus 157 L~----~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 157 LI----NNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred Hh----cCCCeEEeeCccccCChHHHHHHHHHH
Confidence 95 889999999999999999999998764
No 9
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.7e-37 Score=232.81 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=114.8
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccc---cccCHHHHHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATI---RSLGLEDLRS 74 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i---~~~~~~~~~~ 74 (163)
.+++..|+++ +++|+||||+ |++||++.++| ||||||||| ++++++...| .++ ++....-+|+
T Consensus 5 ~~V~k~Y~~g--~~aL~~vs~~-i~~Gef~fl~G-pSGAGKSTl-lkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 5 ENVSKAYPGG--REALRDVSFH-IPKGEFVFLTG-PSGAGKSTL-LKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred hhhhhhcCCC--chhhhCceEe-ecCceEEEEEC-CCCCCHHHH-HHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 3567789864 7899999999 99999999999 999999999 7888888887 233 3333445688
Q ss_pred hc--cccCC---------CcccccCCC----------CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 75 MA--LAQNQ---------SAQAFLGPE----------NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 75 ~~--~~q~~---------~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
++ |||+. +|.+| +++ .+..+.++.+|+ .++++..|.+|||||||||+||||+
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~-pL~v~G~~~~~i~~rV~~~L~~VgL----~~k~~~lP~~LSGGEQQRvaIARAi-- 152 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVAL-PLRVIGKPPREIRRRVSEVLDLVGL----KHKARALPSQLSGGEQQRVAIARAI-- 152 (223)
T ss_pred eeeeEeeeccccccchHhhhhhh-hhhccCCCHHHHHHHHHHHHHHhcc----chhhhcCccccCchHHHHHHHHHHH--
Confidence 87 77765 23333 111 122346778888 8999999999999999999999999
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++|++|+.||||.+|||....+|++++
T Consensus 153 --V~~P~vLlADEPTGNLDp~~s~~im~lf 180 (223)
T COG2884 153 --VNQPAVLLADEPTGNLDPDLSWEIMRLF 180 (223)
T ss_pred --ccCCCeEeecCCCCCCChHHHHHHHHHH
Confidence 5899999999999999999999998753
No 10
>KOG0055|consensus
Probab=100.00 E-value=2.8e-36 Score=274.73 Aligned_cols=152 Identities=23% Similarity=0.299 Sum_probs=126.5
Q ss_pred cCccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHh
Q psy17517 5 NQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSM 75 (163)
Q Consensus 5 ~~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~ 75 (163)
...++.|+||..++.++++|+||+ |++|+.+|+|| ||||||||. +.++-++++| .+++++++.++|++
T Consensus 989 ~~~~V~F~YPsRP~~~Il~~l~l~-i~~GqTvALVG-~SGsGKSTv-I~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 989 EFRNVSFAYPTRPDVPVLNNLSLS-IRAGQTVALVG-PSGSGKSTV-ISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred EEeeeEeeCCCCCCchhhcCCcEE-ecCCCEEEEEC-CCCCCHHHH-HHHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence 345899999999999999999999 99999999999 999999999 7888888887 47889999999999
Q ss_pred c--cccCC--------CcccccCCCCCchhHHHhchhccc----------CCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 76 A--LAQNQ--------SAQAFLGPENPEEPYLQGVNYNCV----------APGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 76 ~--~~q~~--------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
+ |.|+| +|..|...+...+++.+.+.+... -+....+++.+||||||||+|||||+
T Consensus 1066 i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi---- 1141 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI---- 1141 (1228)
T ss_pred cceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH----
Confidence 8 67777 444444223355555555544322 24566788999999999999999999
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++|++|+|||.|||||.++++.+++.|
T Consensus 1142 lRnPkILLLDEATSALDseSErvVQeAL 1169 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEAL 1169 (1228)
T ss_pred HcCCCeeeeeccchhhhhhhHHHHHHHH
Confidence 5899999999999999999999988753
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=239.18 Aligned_cols=144 Identities=19% Similarity=0.159 Sum_probs=118.5
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.++++.|. ++.+++|+||+ |+.||+++++| ||||||||+ ++|+.++..| .++++++..++|++++
T Consensus 5 ~nvsk~y~---~~~av~~v~l~-I~~gef~vliG-pSGsGKTTt-LkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 5 ENVSKRYG---NKKAVDDVNLT-IEEGEFLVLIG-PSGSGKTTT-LKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred eeeehhcC---CceeeeeeeEE-ecCCeEEEEEC-CCCCcHHHH-HHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 36778886 47899999999 99999999999 999999999 8899999988 4678889999999996
Q ss_pred ccCCCcccccCC--------------------CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAFLGP--------------------ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
|.-+..-+|... ..+.++.++.+++ .+.+..+++|.+|||||||||.+||||+ .
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL--~p~~~~~RyP~eLSGGQQQRVGv~RALA----a 152 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL--DPSEYADRYPHELSGGQQQRVGVARALA----A 152 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCC--CHHHHhhcCchhcCcchhhHHHHHHHHh----c
Confidence 665544455211 1122346666666 2235889999999999999999999997 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|+++++|||++||||.++.++++.
T Consensus 153 dP~ilLMDEPFgALDpI~R~~lQ~e 177 (309)
T COG1125 153 DPPILLMDEPFGALDPITRKQLQEE 177 (309)
T ss_pred CCCeEeecCCccccChhhHHHHHHH
Confidence 8999999999999999999988764
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-36 Score=233.79 Aligned_cols=144 Identities=23% Similarity=0.241 Sum_probs=113.4
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------cccc---ccCHHHHHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIR---SLGLEDLRS 74 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~---~~~~~~~~~ 74 (163)
.+++-.||+ ++.+|+||||+ |++||+++||| ||||||||| ++.+.++.++ .++. ....+++|+
T Consensus 7 ~nl~k~yp~--~~~aL~~Vnl~-I~~GE~VaiIG-~SGaGKSTL-LR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 7 KNLSKTYPG--GHQALKDVNLE-INQGEMVAIIG-PSGAGKSTL-LRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eeeeeecCC--CceeeeeEeEE-eCCCcEEEEEC-CCCCcHHHH-HHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 366778985 58899999999 99999999999 999999999 6778888877 1233 334566777
Q ss_pred hc--cccCCC---------cccc------------cCCCCC-----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHH
Q psy17517 75 MA--LAQNQS---------AQAF------------LGPENP-----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAA 126 (163)
Q Consensus 75 ~~--~~q~~~---------~~~~------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrva 126 (163)
++ +||.+. |.+. ++.-.. ..+.++++|+ .+++.++..+|||||||||+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi----~~~A~qra~~LSGGQQQRVa 157 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGI----LDKAYQRASTLSGGQQQRVA 157 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCc----HHHHHHHhccCCcchhHHHH
Confidence 77 666651 1111 011101 1236788888 78888999999999999999
Q ss_pred HHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 127 LALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 127 iAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||||+ ++|++++.|||+|+|||.+.+++++.|
T Consensus 158 IARaL~----Q~pkiILADEPvasLDp~~a~~Vm~~l 190 (258)
T COG3638 158 IARALV----QQPKIILADEPVASLDPESAKKVMDIL 190 (258)
T ss_pred HHHHHh----cCCCEEecCCcccccChhhHHHHHHHH
Confidence 999996 889999999999999999999998864
No 13
>KOG0055|consensus
Probab=100.00 E-value=7.4e-36 Score=272.03 Aligned_cols=150 Identities=24% Similarity=0.279 Sum_probs=121.9
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~- 76 (163)
.+++|+||+.++.++|+|+||+ |++|+.+++|| ||||||||+ +.++.++++| .++.+.+..++|.++
T Consensus 354 ~nV~FsYPsRpdv~Il~g~sl~-i~~G~~valVG-~SGsGKST~-i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig 430 (1228)
T KOG0055|consen 354 RNVCFSYPSRPDVKILKGVSLK-IPSGQTVALVG-PSGSGKSTL-IQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG 430 (1228)
T ss_pred EEEEecCCCCCcchhhCCeEEE-eCCCCEEEEEC-CCCCCHHHH-HHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC
Confidence 3789999999999999999999 99999999999 999999999 8889999998 467888889999998
Q ss_pred -cccCC--------CcccccCCCCCchhHHHhchhc----------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 -LAQNQ--------SAQAFLGPENPEEPYLQGVNYN----------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 -~~q~~--------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
|+|+| +|..|..++...+++.+.+... .+-+....++.-+|||||||||||||||+ +
T Consensus 431 lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv----~ 506 (1228)
T KOG0055|consen 431 LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV----R 506 (1228)
T ss_pred eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH----h
Confidence 77777 3333434444444444433221 11234556677889999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|++|+|||||||||+++++.+++.|
T Consensus 507 ~P~ILLLDEaTSaLD~~se~~Vq~AL 532 (1228)
T KOG0055|consen 507 NPKILLLDEATSALDAESERVVQEAL 532 (1228)
T ss_pred CCCEEEecCcccccCHHHHHHHHHHH
Confidence 89999999999999999999888753
No 14
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=234.91 Aligned_cols=145 Identities=20% Similarity=0.260 Sum_probs=109.9
Q ss_pred cCccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHHHHH--Hhc--
Q psy17517 5 NQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLEDLR--SMA-- 76 (163)
Q Consensus 5 ~~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~~~~--~~~-- 76 (163)
.-.+.+|.|.. . ++|+||||+ +++|++++|+| ||||||||| ++.+.|+..| +. +...+....+ .++
T Consensus 6 ~v~nl~v~y~~--~-~vl~~i~l~-v~~G~~~~iiG-PNGaGKSTL-lK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 6 EVENLTVSYGN--R-PVLEDISLS-VEKGEITALIG-PNGAGKSTL-LKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred EEeeeEEEECC--E-eeeeccEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 34578999964 2 699999999 99999999999 999999999 6667777766 23 3333333332 345
Q ss_pred cccCCC-cccc---------cC----------CC----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 77 LAQNQS-AQAF---------LG----------PE----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 77 ~~q~~~-~~~~---------~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
|+|... +.-| .+ +. ...+++++.+++ .+..++++.+|||||+|||.|||||+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm----~~~~~r~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGM----EDLRDRQIGELSGGQKQRVLLARALA 155 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCc----hhhhCCcccccCcHHHHHHHHHHHhc
Confidence 444331 1111 01 00 112347888888 89999999999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|++++|||||+|+|+.++..+.++|
T Consensus 156 ----~~p~lllLDEP~~gvD~~~~~~i~~lL 182 (254)
T COG1121 156 ----QNPDLLLLDEPFTGVDVAGQKEIYDLL 182 (254)
T ss_pred ----cCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 889999999999999999999998764
No 15
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-36 Score=247.00 Aligned_cols=140 Identities=21% Similarity=0.138 Sum_probs=113.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
++...|++. .+++||||+ |+.||+++++| ||||||||| +++++|+..| .+++++++.+..-.+||
T Consensus 8 ~v~K~yg~~---~~l~~i~l~-i~~Gef~vllG-PSGcGKSTl-Lr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 8 NVRKSFGSF---EVLKDVNLD-IEDGEFVVLLG-PSGCGKSTL-LRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred eeEEEcCCc---eeeecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 567788642 299999999 99999999999 999999999 8899999988 36777787765555688
Q ss_pred cCC---------CcccccCCCC----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 79 QNQ---------SAQAFLGPEN----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 79 q~~---------~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
|++ +|..| ++.. +..++.+.+++ .+..+++|.+||||||||||+||||+ ++|
T Consensus 82 Q~yALyPhmtV~~Niaf-~Lk~~~~~k~ei~~rV~eva~~L~l----~~lL~r~P~~LSGGQrQRVAlaRAlV----r~P 152 (338)
T COG3839 82 QNYALYPHMTVYENIAF-GLKLRGVPKAEIDKRVKEVAKLLGL----EHLLNRKPLQLSGGQRQRVALARALV----RKP 152 (338)
T ss_pred CCccccCCCcHHHHhhh-hhhhCCCchHHHHHHHHHHHHHcCC----hhHHhcCcccCChhhHHHHHHHHHHh----cCC
Confidence 887 23333 2221 12346666777 89999999999999999999999995 899
Q ss_pred CEEEeecccCCCCHHHHHHHHhh
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++++||||+|+||...+..+...
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~e 175 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSE 175 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHH
Confidence 99999999999999998877653
No 16
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-35 Score=230.27 Aligned_cols=146 Identities=17% Similarity=0.180 Sum_probs=109.9
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCH------HHHHHhc
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGL------EDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~------~~~~~~~ 76 (163)
+.++.|+... -.+++++|||+ |.+||+++|+| +|||||||| .+++.|+..| ++ +.+.+. ..+++.+
T Consensus 8 nl~~~y~~~~~~~~~l~~VS~~-i~~Ge~lgivG-eSGsGKSTL-~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~V 84 (252)
T COG1124 8 NLSIVYGGGKFAFHALNNVSLE-IERGETLGIVG-ESGSGKSTL-ARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPV 84 (252)
T ss_pred ceEEEecCCcchhhhhcceeEE-ecCCCEEEEEc-CCCCCHHHH-HHHHhcccCCCCceEEECCcccCccccchhhccce
Confidence 5677786521 12599999999 99999999999 999999999 5667888777 22 222111 1233333
Q ss_pred --cccCCCcccccC----------CCC--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 --LAQNQSAQAFLG----------PEN--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 --~~q~~~~~~~~~----------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
|||+|...+-.. ... +..++++.+++ +..+++++|.+|||||+|||||||||+
T Consensus 85 QmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL---~~~~l~R~P~eLSGGQ~QRiaIARAL~---- 157 (252)
T COG1124 85 QMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGL---PPSFLDRRPHELSGGQRQRIAIARALI---- 157 (252)
T ss_pred eEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCC---CHHHHhcCchhcChhHHHHHHHHHHhc----
Confidence 999996555421 111 12346667776 367899999999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
-+|++||+|||||+||...+.+|+++|
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL 184 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLL 184 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHH
Confidence 679999999999999999999998864
No 17
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.8e-35 Score=258.62 Aligned_cols=149 Identities=22% Similarity=0.301 Sum_probs=121.4
Q ss_pred CccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc
Q psy17517 6 QSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA 76 (163)
Q Consensus 6 ~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~ 76 (163)
-.+++|+|+.+ +.++|+|+|++ |++||+++|+| +|||||||| .+++.+++.| .++...+...+|+++
T Consensus 474 ~~nvsf~y~~~-~~~vL~~isL~-I~~Ge~vaIvG-~SGsGKSTL-~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 474 FENVSFRYGPD-DPPVLEDLSLE-IPPGEKVAIVG-RSGSGKSTL-LKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred EEEEEEEeCCC-CcchhhceeEE-eCCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 34889999875 34799999999 99999999999 999999999 6788999988 366778888999999
Q ss_pred cccCCCccccc----------CCCCCchhHHHhchhcccC----------CCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GPENPEEPYLQGVNYNCVA----------PGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++..+++.+|. .++...+++.+.+.+...+ .....+.+..||||||||++||||| +
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL----l 625 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL----L 625 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh----c
Confidence 66666656663 3445556655555443221 3345678899999999999999999 5
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++++||||||+||+++++.+.+.
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~ 651 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQN 651 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHH
Confidence 89999999999999999999998874
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=244.15 Aligned_cols=140 Identities=21% Similarity=0.157 Sum_probs=115.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++-.|. +..+++||||+ |++||+++++| ||||||||+ +++++|+..| .++..++.....-.+||
T Consensus 10 ~v~k~yg---~~~av~~isl~-i~~Gef~~lLG-PSGcGKTTl-LR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 10 NVSKSFG---DFTAVDDISLD-IKKGEFVTLLG-PSGCGKTTL-LRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred eeeeecC---CeeEEecceee-ecCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 4566775 47899999999 99999999999 999999999 8899999988 36778887765555688
Q ss_pred cCC---------CcccccCCC----C-------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQ---------SAQAFLGPE----N-------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~---------~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
|+. +|..| ++. . +.+++++.+++ .+..+++|.+||||||||||+||||+ .+
T Consensus 84 Q~YALFPHltV~~NVaf-GLk~~~~~~~~~i~~rv~e~L~lV~L----~~~~~R~p~qLSGGQqQRVALARAL~----~~ 154 (352)
T COG3842 84 QSYALFPHMTVEENVAF-GLKVRKKLKKAEIKARVEEALELVGL----EGFADRKPHQLSGGQQQRVALARALV----PE 154 (352)
T ss_pred cCcccCCCCcHHHHhhh-hhhhcCCCCHHHHHHHHHHHHHHcCc----hhhhhhChhhhChHHHHHHHHHHHhh----cC
Confidence 876 33333 222 1 12346677777 88999999999999999999999996 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|++|+||||.|+||.+.+.++...
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~E 178 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKE 178 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHH
Confidence 999999999999999999887653
No 19
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.7e-34 Score=250.15 Aligned_cols=146 Identities=28% Similarity=0.340 Sum_probs=110.9
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|+|+++ .++|+|+||+ |++||.++|+| ||||||||| .+++.++++| .++++. ..++|+++.
T Consensus 338 ~~vsf~Y~~~--~~vL~~isl~-i~~G~~vaIvG-~SGsGKSTL-l~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~ 411 (529)
T TIGR02868 338 RDLSFGYPGS--PPVLDGVSLD-LPPGERVAILG-PSGSGKSTL-LMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRIS 411 (529)
T ss_pred EEEEEecCCC--CceeecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheE
Confidence 3778999753 4699999999 99999999999 999999999 6788899888 355667 778888874
Q ss_pred ccCCCcccc----------cCCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF----------LGPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~----------~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+..|+..+| ..++..+++ +++.+++. .+.+....+.+..||||||||++||||| ++
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal----l~ 487 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL----LA 487 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH----hc
Confidence 444433344 223333333 34443331 1113344567789999999999999999 58
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|+++|||||||+||++++.++.+.
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~ 512 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLED 512 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHH
Confidence 9999999999999999999998864
No 20
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-34 Score=224.50 Aligned_cols=142 Identities=24% Similarity=0.233 Sum_probs=107.3
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCH---HHHHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGL---EDLRS 74 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~---~~~~~ 74 (163)
.+++|+|. ++.+++||||+ |++||+++++| ||||||||| ++++.++.+| .++.+.+. .++|+
T Consensus 12 r~v~~~fG---~~~Ild~v~l~-V~~Gei~~iiG-gSGsGKStl-Lr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 12 RGVTKSFG---DRVILDGVDLD-VPRGEILAILG-GSGSGKSTL-LRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eeeeeecC---CEEEecCceee-ecCCcEEEEEC-CCCcCHHHH-HHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 36778884 47899999999 99999999999 999999999 7778888887 23444433 35677
Q ss_pred hccccCCCcccccC----------CC---CCch--------hHHHhchhcccCCCc-cCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 75 MALAQNQSAQAFLG----------PE---NPEE--------PYLQGVNYNCVAPGK-RFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 75 ~~~~q~~~~~~~~~----------~~---~~~~--------~~~~~~~~~~~~~~~-~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++.+..|..-+|.. .. ...+ ..++.+|+ .+. .+.+|++|||||++|+|+|||+|
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL----~~~~~~~~PsELSGGM~KRvaLARAia 161 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGL----RGAAADLYPSELSGGMRKRVALARAIA 161 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCC----ChhhhhhCchhhcchHHHHHHHHHHHh
Confidence 77434433334311 10 1111 13455565 555 88999999999999999999998
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
-+|+++++||||+||||.+...+-++
T Consensus 162 ----ldPell~~DEPtsGLDPI~a~~~~~L 187 (263)
T COG1127 162 ----LDPELLFLDEPTSGLDPISAGVIDEL 187 (263)
T ss_pred ----cCCCEEEecCCCCCCCcchHHHHHHH
Confidence 46999999999999999998887665
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.8e-34 Score=236.82 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=109.5
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHH---HHH
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLED---LRS 74 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~---~~~ 74 (163)
++++.|+..+ ..++|+||||+ |++||+++|+| ||||||||| ++++.++.+| .++...+..+ +|+
T Consensus 6 ~lsk~y~~~~~~~~~L~~vsl~-i~~Gei~gIiG-~sGaGKSTL-lr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~ 82 (343)
T TIGR02314 6 NITKVFHQGTKTIQALNNVSLH-VPAGQIYGVIG-ASGAGKSTL-IRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARR 82 (343)
T ss_pred EEEEEECCCCcceEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhc
Confidence 5677886422 35799999999 99999999999 999999999 7888899887 2344433333 455
Q ss_pred hc--cccCCCccccc----------CC-----CC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 75 MA--LAQNQSAQAFL----------GP-----EN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 75 ~~--~~q~~~~~~~~----------~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++ +||++ .++. +. .. +..++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 83 ~Ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL----~~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 83 QIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGL----GDKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred CEEEEECCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----chhhhCChhhCCHHHHHHHHHHHHHH
Confidence 55 56664 2221 10 00 11235667777 77889999999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|++++||||||+||+.++..++++|
T Consensus 157 ----~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 157 ----SNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred ----hCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 22
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-33 Score=246.79 Aligned_cols=145 Identities=23% Similarity=0.238 Sum_probs=110.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|.|++ +.++|+|+||+ |++||+++|+| ||||||||| .+++.+++ | .++.+.+..++|+++.+
T Consensus 354 ~vsf~~~~--~~~vL~~i~l~-i~~G~~vaIvG-~SGsGKSTL-~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 354 DLEILSPD--GKTLAGPLNFT-LPAGQRIALVG-PSGAGKTSL-LNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eeEEeccC--CCeeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 56677764 36799999999 99999999999 999999999 67788888 6 35677888899998844
Q ss_pred cCCCcccc----------cCCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAF----------LGPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~----------~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..|+..+| ..++..+++ +++.+++. .+.+....+.+.+||||||||++|||||+ ++
T Consensus 428 v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll----~~ 503 (588)
T PRK11174 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL----QP 503 (588)
T ss_pred ecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh----cC
Confidence 44433444 223333444 33333321 11134455678899999999999999994 89
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+++|||||||+||+++++++.+.
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~ 527 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQA 527 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHH
Confidence 999999999999999999998764
No 23
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.9e-33 Score=218.19 Aligned_cols=142 Identities=23% Similarity=0.294 Sum_probs=105.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH---HHHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL---EDLRSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~---~~~~~~ 75 (163)
+.+|.|++. .+++++++||+ +++||+++|+| ||||||||| ++++.++.+| + ++...+. ..+++.
T Consensus 6 ~l~~~~~~~-~~~il~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 6 QVSKAYPGG-HQPALDNLNFH-ITKGEMVFLVG-HSGAGKSTF-LKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred EEEEEecCC-CeeEEEeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 567888642 24699999999 99999999999 999999999 6778888776 2 1222221 124555
Q ss_pred c--cccCCCcccccC---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 76 A--LAQNQSAQAFLG---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 76 ~--~~q~~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
+ ++|++ .++.. ... ...++++.+++ .+..++++.+||||||||++|||||+
T Consensus 82 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~laral~- 154 (216)
T TIGR00960 82 IGMVFQDH--RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGL----EGKAHALPMQLSGGEQQRVAIARAIV- 154 (216)
T ss_pred ceEEecCc--cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----hhhhhCChhhCCHHHHHHHHHHHHHh-
Confidence 5 55554 22210 000 01224556666 66778899999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 155 ---~~p~llllDEPt~~LD~~~~~~l~~~l 181 (216)
T TIGR00960 155 ---HKPPLLLADEPTGNLDPELSRDIMRLF 181 (216)
T ss_pred ---cCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 24
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.1e-33 Score=248.84 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=113.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|+|+++ +.++|+|+||+ |++||.++|+| +|||||||| .+++.++++| .++.+.+..++|+++.+
T Consensus 456 nvsf~Y~~~-~~~vL~~isl~-i~~Ge~vaIvG-~sGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 531 (686)
T TIGR03797 456 RVTFRYRPD-GPLILDDVSLQ-IEPGEFVAIVG-PSGSGKSTL-LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV 531 (686)
T ss_pred EEEEEcCCC-CccceeeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence 789999754 46799999999 99999999999 999999999 7888999988 36778888899999844
Q ss_pred cCCCccccc---------CCCCCchh---HHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 79 QNQSAQAFL---------GPENPEEP---YLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 79 q~~~~~~~~---------~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
..|+..+|. +....+++ +++.+++.. +.+....+.+..||||||||++||||| +++|
T Consensus 532 v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl----l~~p 607 (686)
T TIGR03797 532 VLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL----VRKP 607 (686)
T ss_pred EccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH----hcCC
Confidence 444444441 21123333 334333311 112334566789999999999999999 4899
Q ss_pred CEEEeecccCCCCHHHHHHHHhh
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++++||||||+||+.+++++.+.
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~ 630 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSES 630 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHH
Confidence 99999999999999999998864
No 25
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.8e-33 Score=249.96 Aligned_cols=147 Identities=19% Similarity=0.223 Sum_probs=112.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|+|+++ +.++|+|+||+ |++||.++|+| +|||||||| ++++.++++| .++++.+..++|+++.+
T Consensus 482 ~vsf~y~~~-~~~vL~~isl~-i~~Ge~vaIvG-~sGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 557 (710)
T TIGR03796 482 NITFGYSPL-EPPLIENFSLT-LQPGQRVALVG-GSGSGKSTI-AKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAM 557 (710)
T ss_pred EEEEecCCC-CCCcccceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeE
Confidence 789999864 46799999999 99999999999 999999999 7888999888 25566777888999844
Q ss_pred cCCCcccc----------cCCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAF----------LGPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~----------~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..|+..+| ..++..+++ +++.+++. .+.+....+.+..||||||||++|||||+ ++
T Consensus 558 v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall----~~ 633 (710)
T TIGR03796 558 VDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV----RN 633 (710)
T ss_pred EecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh----hC
Confidence 44433343 222333333 23333321 01133445678899999999999999995 88
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+++|||||||+||+.++.++.+.
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~ 657 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDN 657 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHH
Confidence 999999999999999999998875
No 26
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.4e-33 Score=248.39 Aligned_cols=148 Identities=22% Similarity=0.276 Sum_probs=112.1
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|.||+.++.++|+|+||+ |++||.++|+| ||||||||| .+++.++++| .++.+.+..++++++.
T Consensus 482 ~nVsf~Y~~~~~~~vL~~isl~-i~~Ge~vaIvG-~SGsGKSTL-l~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 558 (711)
T TIGR00958 482 QDVSFSYPNRPDVPVLKGLTFT-LHPGEVVALVG-PSGSGKSTV-AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVA 558 (711)
T ss_pred EEEEEECCCCCCCccccCceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhce
Confidence 3789999976567899999999 99999999999 999999999 7788899888 2456667778888884
Q ss_pred ccCCCcccc----------cCCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF----------LGPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~----------~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+..|+..+| ......+++ +++.+++. .+.+...++.+.+||||||||++||||++ +
T Consensus 559 ~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl----~ 634 (711)
T TIGR00958 559 LVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV----R 634 (711)
T ss_pred EEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh----c
Confidence 444433344 222223333 33333321 11133445667899999999999999994 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
+|+++|||||||+||++++.++.+
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHH
Confidence 999999999999999999988865
No 27
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.4e-33 Score=215.32 Aligned_cols=143 Identities=20% Similarity=0.284 Sum_probs=106.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCH--HHHHHhc--ccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGL--EDLRSMA--LAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~--~~~~~~~--~~q 79 (163)
+.++.|++. .++++++||+ +++||+++|+| ||||||||| ++++.++.+| +. +.+.+. ..+++++ ++|
T Consensus 4 ~l~~~~~~~--~~~l~~v~~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 4 NISFSYKKG--TEILDDLSLD-LYAGEIIALTG-KNGAGKTTL-AKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred cEEEEeCCc--CceeeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 567888642 5799999999 99999999999 999999999 6778888776 22 222222 2344445 555
Q ss_pred CCCcccc---------cCC--CC----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 80 NQSAQAF---------LGP--EN----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 80 ~~~~~~~---------~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
++...++ +.. .. ...++++.+++ .+..++++.+||||||||++|||||+ .+|+++||
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~----~~p~llll 150 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDL----YALKERHPLSLSGGQKQRLAIAAALL----SGKDLLIF 150 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCC----chhcCCCchhCCHHHHHHHHHHHHHH----hCCCEEEE
Confidence 5421121 010 01 11345666776 67788999999999999999999996 78999999
Q ss_pred ecccCCCCHHHHHHHHhhC
Q psy17517 145 DEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~l 163 (163)
||||++||+.++..+.+.|
T Consensus 151 DEPt~~LD~~~~~~l~~~l 169 (205)
T cd03226 151 DEPTSGLDYKNMERVGELI 169 (205)
T ss_pred eCCCccCCHHHHHHHHHHH
Confidence 9999999999999988753
No 28
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-34 Score=227.60 Aligned_cols=140 Identities=21% Similarity=0.221 Sum_probs=107.0
Q ss_pred ceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------c---cccccCHHHHHHhc
Q psy17517 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------A---TIRSLGLEDLRSMA 76 (163)
Q Consensus 9 ~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~---~i~~~~~~~~~~~~ 76 (163)
++..|+ ...+++||+++ |+.||.++++| ||||||||+ +++|.|+..| . +.++...++.+-..
T Consensus 8 ~~~~~~---~~~a~~di~l~-i~~Ge~vaLlG-pSGaGKsTl-LRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 8 VKKRFG---AFGALDDISLD-IKSGELVALLG-PSGAGKSTL-LRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred hhhhcc---cccccccceee-ecCCcEEEEEC-CCCCcHHHH-HHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 344554 46899999999 99999999999 999999999 7889999888 1 23333333333223
Q ss_pred cccCC---------CcccccCCC------------CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 LAQNQ---------SAQAFLGPE------------NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 ~~q~~---------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
+||++ +|..| ++. .+.+++++.+.+ .+..++||.+||||||||||+||||+
T Consensus 82 vFQ~YALF~HmtVa~NIAF-Gl~~~~~~p~~~~~r~rv~elL~lvqL----~~la~ryP~QLSGGQrQRVALARALA--- 153 (345)
T COG1118 82 VFQHYALFPHMTVADNIAF-GLKVRKERPSEAEIRARVEELLRLVQL----EGLADRYPAQLSGGQRQRVALARALA--- 153 (345)
T ss_pred EEechhhcccchHHhhhhh-cccccccCCChhhHHHHHHHHHHHhcc----cchhhcCchhcChHHHHHHHHHHHhh---
Confidence 67765 33333 221 112345667777 89999999999999999999999997
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
-+|++|+||||+++||...+.++.++|
T Consensus 154 -~eP~vLLLDEPf~ALDa~vr~~lr~wL 180 (345)
T COG1118 154 -VEPKVLLLDEPFGALDAKVRKELRRWL 180 (345)
T ss_pred -cCCCeEeecCCchhhhHHHHHHHHHHH
Confidence 679999999999999999999887653
No 29
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.8e-33 Score=242.96 Aligned_cols=147 Identities=23% Similarity=0.348 Sum_probs=116.2
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|.|++ +.++++|+||+ +++||.+|++| ||||||||+ .+++.++++| .++++.+..++|+++.
T Consensus 332 ~~vsf~y~~--~~~vl~~is~~-i~~Ge~vaiVG-~sGsGKSTl-~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 332 ENVSFSYPG--KKPVLKDISFS-IEPGEKVAIVG-PSGSGKSTL-IKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred EEEEEEcCC--CCccccCceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 478999985 46899999999 99999999999 999999999 7888999988 3677888889999984
Q ss_pred ccCCCcccc----------cCCCCCchhHHHhchhcc----------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF----------LGPENPEEPYLQGVNYNC----------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~----------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+..|+..+| ..++..++++.+.+.... +.+...++.+..||||||||++||||+ ++
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARal----l~ 482 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL----LR 482 (567)
T ss_pred EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHH----hc
Confidence 444444444 233344445443333221 113455677889999999999999999 58
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|++++||||||+||++++..+++.
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~ 507 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDA 507 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHH
Confidence 9999999999999999999998874
No 30
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.7e-33 Score=213.90 Aligned_cols=144 Identities=26% Similarity=0.331 Sum_probs=105.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|++. +.++++++||+ +++||+++|+| ||||||||| ++++.++.+| + ++...+...+++.+
T Consensus 4 ~l~~~~~~~-~~~il~~vs~~-i~~G~~~~l~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 4 NLSFSYPDG-ARPALDDISLT-IKKGEFVLIVG-PNGSGKSTL-LRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred eEEEecCCC-CeeeecceEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 567888642 25799999999 99999999999 999999999 6778888766 2 22333344555555
Q ss_pred cccCCCccccc---------C-----CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 LAQNQSAQAFL---------G-----PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 ~~q~~~~~~~~---------~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|.+...++. . ... ...++++.+++ .+..++++.+||||||||++|||||+ .
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~laral~----~ 151 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL----EGLRDRSPFTLSGGQKQRVAIAGVLA----M 151 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc----HhhhcCCcccCCHHHHHHHHHHHHHh----c
Confidence 45543211110 0 000 01124555565 56678889999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.+.|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~~~~~l 177 (211)
T cd03225 152 DPDILLLDEPTAGLDPAGRRELLELL 177 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999887753
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-33 Score=218.46 Aligned_cols=140 Identities=26% Similarity=0.254 Sum_probs=104.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH---HHHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL---EDLRSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~---~~~~~~ 75 (163)
+.+|.|++ .++++|+||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+. ..+++.
T Consensus 5 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 5 GLTKSFGG---RTVLKGVDLD-VRRGEILAIIG-PSGSGKSTL-LRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred EEEEEECC---EEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 56788853 5799999999 99999999999 999999999 6778888776 2 2222222 334555
Q ss_pred c--cccCCCcccccC------------CC--CC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 76 A--LAQNQSAQAFLG------------PE--NP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 76 ~--~~q~~~~~~~~~------------~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
+ ++|.+ .+|.. .. .. ..++++.+++ .+..++++.+||||||||++|||||+
T Consensus 79 i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 79 MGMLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL----RGAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred eEEEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHHHHh
Confidence 5 45543 22210 00 00 1124555565 56678899999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 153 ----~~p~llllDEPt~~LD~~~~~~l~~~l 179 (235)
T cd03261 153 ----LDPELLLYDEPTAGLDPIASGVIDDLI 179 (235)
T ss_pred ----cCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999987753
No 32
>KOG0057|consensus
Probab=100.00 E-value=4e-33 Score=237.03 Aligned_cols=146 Identities=25% Similarity=0.332 Sum_probs=118.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--------ccccccCHHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--------ATIRSLGLEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--------~~i~~~~~~~~~~~~~~q 79 (163)
+++|.|+. ++++|++|||+ |++||.+||+| +|||||||+ +++++++.+. .+++..+.+.+|+.|.+.
T Consensus 356 dV~f~y~~--k~~iL~gvsf~-I~kGekVaIvG-~nGsGKSTi-lr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 356 DVHFSYGP--KRKVLKGVSFT-IPKGEKVAIVG-SNGSGKSTI-LRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred eeEEEeCC--CCceecceeEE-ecCCCEEEEEC-CCCCCHHHH-HHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEe
Confidence 78999974 57899999999 99999999999 999999999 6777777765 467788888899998777
Q ss_pred CCCcccc----------cCCCCCchhHHHhchhcccC----------CCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 80 NQSAQAF----------LGPENPEEPYLQGVNYNCVA----------PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 80 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
+|+..+| ..+....+++.+.+.....+ .....+++..|||||||||++|||+ +++|
T Consensus 431 PQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~----lKda 506 (591)
T KOG0057|consen 431 PQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF----LKDA 506 (591)
T ss_pred CCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH----hcCC
Confidence 7766666 23445555555544332211 1235678899999999999999999 5999
Q ss_pred CEEEeecccCCCCHHHHHHHHhh
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++++|||||+||.++++++.+.
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~ 529 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDM 529 (591)
T ss_pred CeEEecCcccccchhhHHHHHHH
Confidence 99999999999999999998875
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6e-33 Score=262.37 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=113.7
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------------------------
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI------------------------- 61 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~------------------------- 61 (163)
.+++|+||+.++.++|+|+||+ |++|+.+|||| ||||||||+ ++++.++++|
T Consensus 1169 ~nVsF~Y~~~~~~~vL~~lsl~-i~~G~~vAIVG-~SGsGKSTl-~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1169 MDVNFRYISRPNVPIYKDLTFS-CDSKKTTAIVG-ETGSGKSTV-MSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEECCCCCCCccccCeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHHhCCCccccccccccccccccccccccccc
Confidence 4789999976567899999999 99999999999 999999999 6777887764
Q ss_pred --------------------------------------ccccccCHHHHHHhccccCCCcccc----------cCCCCCc
Q psy17517 62 --------------------------------------ATIRSLGLEDLRSMALAQNQSAQAF----------LGPENPE 93 (163)
Q Consensus 62 --------------------------------------~~i~~~~~~~~~~~~~~q~~~~~~~----------~~~~~~~ 93 (163)
.++++++..++|+++.+..|+..+| ..++..+
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ 1325 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATR 1325 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCH
Confidence 1345667788899884444443444 2233344
Q ss_pred hhHHHhchhc----------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 94 EPYLQGVNYN----------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 94 ~~~~~~~~~~----------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++.+.+... .+.+....+.+..||||||||+|||||| +++|++||||||||+||+++++.|.+.
T Consensus 1326 eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL----lr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1326 EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL----LREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH----hcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 4433322221 1113445677889999999999999999 489999999999999999999998764
No 34
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=234.00 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=107.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ +.++|+|+||+ +++||+++|+| ||||||||| ++++.|+.+| .++...+.. ++.+
T Consensus 8 ~l~~~~~~--~~~~l~~vsl~-i~~Ge~~~llG-~sGsGKSTL-Lr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 8 AVRKSYDG--KTQVIKGIDLD-VADGEFIVLVG-PSGCGKSTL-LRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred eEEEEeCC--CCEEEeeeeEE-EcCCCEEEEEC-CCCCcHHHH-HHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 56778853 36799999999 99999999999 999999999 7888898877 133344433 3445
Q ss_pred cccCCCccccc----------CCCC----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GPEN----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+|. .... ..+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 81 v~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~LSgGq~QRvalARAL~---- 150 (356)
T PRK11650 81 VFQNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILEL----EPLLDRKPRELSGGQRQRVAMGRAIV---- 150 (356)
T ss_pred EeCCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC----hhHhhCChhhCCHHHHHHHHHHHHHh----
Confidence 66654 2331 1110 11235666677 77889999999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|++++||||||+||+..+.++.+.
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~ 176 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLE 176 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 78999999999999999999988764
No 35
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-33 Score=224.45 Aligned_cols=145 Identities=23% Similarity=0.264 Sum_probs=109.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+++|.|+.....++|+|+||+ |.+||+++|+| +|||||||| ++++.|+.+| + ++...+..++++++
T Consensus 9 ~l~~~~~~~~~~~~l~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13650 9 NLTFKYKEDQEKYTLNDVSFH-VKQGEWLSIIG-HNGSGKSTT-VRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGM 85 (279)
T ss_pred eEEEEcCCCCcCeeeeeeEEE-EeCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceE
Confidence 678889643235699999999 99999999999 999999999 6778888776 1 33334444566665
Q ss_pred cccCCCcccc---------cCCCC----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 LAQNQSAQAF---------LGPEN----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 ~~q~~~~~~~---------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|++...++ +.... ..+++++.+++ .+..++++.+||||||||++|||||+ .
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~LSgGq~qrv~lAral~----~ 157 (279)
T PRK13650 86 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGM----QDFKEREPARLSGGQKQRVAIAGAVA----M 157 (279)
T ss_pred EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC----HhHhhCCcccCCHHHHHHHHHHHHHH----c
Confidence 6666532222 11000 11235566666 67788999999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.+.|
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l 183 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTI 183 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHH
Confidence 89999999999999999999988753
No 36
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-33 Score=223.49 Aligned_cols=146 Identities=23% Similarity=0.259 Sum_probs=108.4
Q ss_pred ccceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccccc--CHHHHH
Q psy17517 7 SAQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSL--GLEDLR 73 (163)
Q Consensus 7 ~~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~--~~~~~~ 73 (163)
.+++|.|+... .+++|+||||+ |.+||+++|+| ||||||||| ++++.++.+| + ++... ....++
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vs~~-i~~Ge~~~i~G-~nGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 6 ENLTHIYMEGTPFEKKALDNVNIE-IEDGEFVGLIG-HTGSGKSTL-IQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEECCCCCccccceeeeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 36788997422 24799999999 99999999999 999999999 6778888877 1 22222 123455
Q ss_pred Hhc--cccCCCccccc---------CCC---CC-------chhHHHhchhcccCC--CccCCCCCCCCHHHHHHHHHHHH
Q psy17517 74 SMA--LAQNQSAQAFL---------GPE---NP-------EEPYLQGVNYNCVAP--GKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 74 ~~~--~~q~~~~~~~~---------~~~---~~-------~~~~~~~~~~~~~~~--~~~~~~~~~LSgGqkQrvaiAra 130 (163)
+++ ++|++...++. ... .. ..++++.+++ . +..++++.+||||||||++||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~~~LSgGq~qrv~iAra 158 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL----DYEDYKDKSPFELSGGQKRRVAIAGV 158 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCC----CchhhccCCcccCCHHHHHHHHHHHH
Confidence 555 67776433331 100 00 1234555565 4 46788999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ .+|+++||||||++||+.++.++.++|
T Consensus 159 L~----~~P~llllDEPt~gLD~~~~~~l~~~l 187 (287)
T PRK13637 159 VA----MEPKILILDEPTAGLDPKGRDEILNKI 187 (287)
T ss_pred HH----cCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 96 789999999999999999999988753
No 37
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.2e-32 Score=245.45 Aligned_cols=148 Identities=24% Similarity=0.301 Sum_probs=113.5
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|+|+++ +.++|+|+||+ |++||.++|+| +|||||||| .+++.++++| .++.+.+..++|+++.
T Consensus 467 ~~vsf~Y~~~-~~~vL~~i~l~-i~~G~~iaIvG-~sGsGKSTL-lklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 467 RNVSFAYPGQ-ETPALDNVSLT-IRPGEKVAIIG-RIGSGKSTL-LKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEEEEEeCCC-CccceeeeeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 3789999753 46799999999 99999999999 999999999 7888999888 3566778888999885
Q ss_pred ccCCCcccc----------cCCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF----------LGPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~----------~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+..|+..+| ..+...+++ +++.+++. .+.+....+.+..||||||||++|||||+ +
T Consensus 543 ~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall----~ 618 (694)
T TIGR03375 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL----R 618 (694)
T ss_pred EECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh----c
Confidence 444443444 222233333 23333321 11133455678899999999999999994 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|+++|||||||+||++++.++.+.
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~ 643 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDR 643 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999998764
No 38
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=239.96 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=111.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|+|++. +.++|+|+||+ |++||.++|+| +|||||||| .+++.|+++| .++...+..++++++.+
T Consensus 346 ~vsf~y~~~-~~~il~~i~l~-i~~G~~~aIvG-~sGsGKSTL-l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 346 NVTFTYPGK-EVPALRNINFK-IPAGKTVALVG-RSGSGKSTI-ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred EEEEecCCC-CCccccCceEE-eCCCCEEEEEC-CCCCCHHHH-HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceE
Confidence 789999753 46899999999 99999999999 999999999 6788899888 24566777788888744
Q ss_pred cCCCcccc---------cC-CC-CCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 79 QNQSAQAF---------LG-PE-NPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 79 q~~~~~~~---------~~-~~-~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
..|+..+| ++ .+ ..+++ +++.+++. .+.+....+...+||||||||++|||||+ +
T Consensus 422 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall----~ 497 (582)
T PRK11176 422 VSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL----R 497 (582)
T ss_pred EccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH----h
Confidence 44433343 12 22 12232 33333321 11233445667889999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|++++||||||+||+.++.++.+.
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~ 522 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAA 522 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHH
Confidence 8999999999999999999988764
No 39
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=9.7e-33 Score=214.32 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=103.7
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc-------ccccCHH---H-HH
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT-------IRSLGLE---D-LR 73 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~-------i~~~~~~---~-~~ 73 (163)
+++|.|++.. ..++++++||+ |++||+++|+| ||||||||| ++++.++.+| +. +...+.. . .+
T Consensus 5 ~l~~~~~~~~~~~~il~~~s~~-i~~G~~~~l~G-~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 5 NLSKTYGGGGEKVQALKGVSLS-IEKGEFVAIVG-PSGSGKSTL-LNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred eeEEEecCCCcceeEEeeeEEE-EcCCCEEEEEc-CCCCCHHHH-HHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 5778886421 15799999999 99999999999 999999999 6778888776 22 2222211 1 23
Q ss_pred Hhc--cccCCCcccccC------------CCC--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 74 SMA--LAQNQSAQAFLG------------PEN--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 74 ~~~--~~q~~~~~~~~~------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
+++ ++|++ .+|.. ... ...++++.+++ ....++++.+||||||||++|||||
T Consensus 82 ~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 82 RHIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL----GDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hcEEEEeecc--ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC----chhhhcChhhcCHHHHHHHHHHHHH
Confidence 344 45543 22211 000 01234555666 5667888999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.++|
T Consensus 156 ~----~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (218)
T cd03255 156 A----NDPKIILADEPTGNLDSETGKEVMELL 183 (218)
T ss_pred c----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 5 789999999999999999999988753
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-32 Score=228.01 Aligned_cols=143 Identities=20% Similarity=0.237 Sum_probs=107.2
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHH---HHH
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLED---LRS 74 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~---~~~ 74 (163)
+++|.|+... +.++|+|+||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+..+ +++
T Consensus 6 ~l~~~y~~~~~~~~il~~vsl~-i~~Gei~~iiG-~nGsGKSTL-lk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 82 (343)
T PRK11153 6 NISKVFPQGGRTIHALNNVSLH-IPAGEIFGVIG-ASGAGKSTL-IRCINLLERPTSGRVLVDGQDLTALSEKELRKARR 82 (343)
T ss_pred eEEEEeCCCCCceEEEEeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhc
Confidence 6788886321 35799999999 99999999999 999999999 6778888876 1 233333332 345
Q ss_pred hc--cccCCCcccccC---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 75 MA--LAQNQSAQAFLG---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 75 ~~--~~q~~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++ ++|++ .++.. ... ...++++.+++ .+..++++.+||||||||++|||||+
T Consensus 83 ~ig~v~q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 83 QIGMIFQHF--NLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGL----SDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred CEEEEeCCC--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----chhhhCChhhCCHHHHHHHHHHHHHH
Confidence 55 55554 23210 000 11235566666 67788999999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|+++||||||++||+.++..+.++|
T Consensus 157 ----~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 157 ----SNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred ----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 41
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.8e-32 Score=237.51 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=111.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|+||+. ++++++|+||+ |++||.++|+| ||||||||| .+++.++++| .++.+.+..++|+++.+
T Consensus 325 ~v~f~y~~~-~~~il~~i~l~-i~~G~~~~ivG-~sGsGKSTL-~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~ 400 (529)
T TIGR02857 325 GLSVAYPGR-RAPALRPVSFT-VPPGERVALVG-PSGAGKSTL-LNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAW 400 (529)
T ss_pred EEEEECCCC-CcccccceeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEE
Confidence 789999864 35799999999 99999999999 999999999 7888999988 34566777888888844
Q ss_pred cCCCcccc----------cCCCCCchh---HHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAF----------LGPENPEEP---YLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~----------~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..++..+| ..+...+++ +++.+++.. +.+....+.+.+||||||||++|||||+ ++
T Consensus 401 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~----~~ 476 (529)
T TIGR02857 401 VPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL----RD 476 (529)
T ss_pred EcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh----cC
Confidence 44433343 122222333 333333311 1123445678899999999999999995 89
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|++++||||||+||+.+++++.+.
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~ 500 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEA 500 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHH
Confidence 999999999999999999998764
No 42
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.98 E-value=1.9e-32 Score=213.11 Aligned_cols=143 Identities=21% Similarity=0.249 Sum_probs=104.5
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHH---HH-
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLED---LR- 73 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~---~~- 73 (163)
+++|.|++.. ..++++++||+ +++||+++|+| ||||||||| ++++.++.+| + ++...+..+ ++
T Consensus 6 ~v~~~~~~~~~~~~~l~~isl~-i~~G~~~~i~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (221)
T TIGR02211 6 NLGKRYQEGKLDTRVLKGVSLS-IGKGEIVAIVG-SSGSGKSTL-LHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRN 82 (221)
T ss_pred eeeEEccCCCcceEeEeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHH
Confidence 5788896422 24699999999 99999999999 999999999 6778888776 2 222222222 23
Q ss_pred Hhc--cccCCCcccccC---------------CCCC-----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 74 SMA--LAQNQSAQAFLG---------------PENP-----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 74 ~~~--~~q~~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
+.+ ++|++ .++.. .... ..++++.+++ .+..++++.+||||||||++|||+|
T Consensus 83 ~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 83 KKLGFIYQFH--HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL----EHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred hcEEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----hhhhhCChhhCCHHHHHHHHHHHHH
Confidence 345 55553 22210 0000 1124555555 5667889999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.+.|
T Consensus 157 ~----~~p~illlDEPt~~LD~~~~~~l~~~l 184 (221)
T TIGR02211 157 V----NQPSLVLADEPTGNLDNNNAKIIFDLM 184 (221)
T ss_pred h----CCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 6 789999999999999999999887753
No 43
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.98 E-value=2.2e-32 Score=211.82 Aligned_cols=141 Identities=21% Similarity=0.206 Sum_probs=103.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH---HHHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL---EDLRSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~---~~~~~~ 75 (163)
+.++.|+. +.++++|+||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+. ..+++.
T Consensus 6 ~l~~~~~~--~~~il~~is~~-i~~G~~~~l~G-~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 6 NVSKAYPG--GVAALHDVSLH-IRKGEFLFLTG-PSGAGKTTL-LKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred eeeEEeCC--CceeecceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 56778852 35799999999 99999999999 999999999 6777888766 2 2222222 234455
Q ss_pred c--cccCCCcccccC---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 76 A--LAQNQSAQAFLG---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 76 ~--~~q~~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
+ ++|.+ .+|.. ... ...++++.+++ .+..++.+.+||||||||++|||||+
T Consensus 81 i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~la~al~- 153 (214)
T TIGR02673 81 IGVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGL----EHKADAFPEQLSGGEQQRVAIARAIV- 153 (214)
T ss_pred eEEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----hhhhhCChhhCCHHHHHHHHHHHHHh-
Confidence 5 44443 23210 000 01124555555 56677889999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 154 ---~~p~lllLDEPt~~LD~~~~~~l~~~l 180 (214)
T TIGR02673 154 ---NSPPLLLADEPTGNLDPDLSERILDLL 180 (214)
T ss_pred ---CCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999987753
No 44
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.4e-32 Score=212.81 Aligned_cols=140 Identities=23% Similarity=0.205 Sum_probs=102.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCH---HHHHHhc--cc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGL---EDLRSMA--LA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~---~~~~~~~--~~ 78 (163)
+.+|.|++ +++++|+||+ +++||+++|+| ||||||||| ++++.++.+| +. +.+.+. ...++++ ++
T Consensus 5 ~l~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 5 GLSKTYGS---VRALDDLSLT-VEPGEFLALLG-PSGCGKTTL-LRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred eeEEEeCC---eeeecceeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 56788863 5799999999 99999999999 999999999 6778888776 21 111111 1223344 55
Q ss_pred cCCCcccccC------------CC--C------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAFLG------------PE--N------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~~~------------~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
|++. ++.. .. . ...++++.+++ .+..++++.+||||||||++|||||+ .+
T Consensus 79 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrl~la~al~----~~ 148 (213)
T cd03259 79 QDYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL----EGLLNRYPHELSGGQQQRVALARALA----RE 148 (213)
T ss_pred Cchh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----hhhhhcChhhCCHHHHHHHHHHHHHh----cC
Confidence 5542 2210 00 0 01234555565 56678889999999999999999996 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+++||||||++||+.++..+.++|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREEL 173 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999988753
No 45
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=4.8e-33 Score=230.94 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=106.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ ..+++|+||+ +++||+++|+| ||||||||| ++++.|+.+| .++...+.. ++++
T Consensus 11 ~l~~~~~~---~~~l~~isl~-i~~Ge~~~llG-psGsGKSTL-Lr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 82 (351)
T PRK11432 11 NITKRFGS---NTVIDNLNLT-IKQGTMVTLLG-PSGCGKTTV-LRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICM 82 (351)
T ss_pred eEEEEECC---eEEEeeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 67788853 5799999999 99999999999 999999999 7888999887 133333432 3444
Q ss_pred cccCCCccccc----------CCC--C--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GPE--N--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+|. +.. . ..+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 83 vfQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl----~~~~~r~~~~LSgGq~QRVaLARaL~---- 152 (351)
T PRK11432 83 VFQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL----AGFEDRYVDQISGGQQQRVALARALI---- 152 (351)
T ss_pred EeCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHHHHH----
Confidence 66665 2331 111 0 11235566666 67889999999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|+++|||||+|+||+..+.++.+.
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~ 178 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREK 178 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 78999999999999999999998764
No 46
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.98 E-value=2.6e-32 Score=211.21 Aligned_cols=141 Identities=21% Similarity=0.239 Sum_probs=104.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH---HHHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL---EDLRSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~---~~~~~~ 75 (163)
+.++.|++. +++++|+||+ +.+||+++|+| ||||||||| ++++.|+.+| + ++...+. ..+++.
T Consensus 5 ~l~~~~~~~--~~~l~~~sl~-i~~G~~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 5 NVTKTYPNG--TAALDGINIS-ISAGEFVFLVG-PSGAGKSTL-LKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred EEEEEeCCC--ceeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 567888642 5799999999 99999999999 999999999 6778888766 2 2222221 234555
Q ss_pred c--cccCCCcccccC------------CCC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 76 A--LAQNQSAQAFLG------------PEN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 76 ~--~~q~~~~~~~~~------------~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
+ ++|++ .+|.. ... . ..++++.+++ .+..++++.+||||||||++|||||+
T Consensus 80 i~~v~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~- 152 (214)
T cd03292 80 IGVVFQDF--RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGL----SHKHRALPAELSGGEQQRVAIARAIV- 152 (214)
T ss_pred eEEEecCc--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----HHHhhCChhhcCHHHHHHHHHHHHHH-
Confidence 5 45544 22210 000 0 1124555555 56678889999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 153 ---~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 153 ---NSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred ---cCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 47
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.98 E-value=1.2e-32 Score=213.23 Aligned_cols=142 Identities=20% Similarity=0.286 Sum_probs=105.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHHHHHHhc--cccCC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLEDLRSMA--LAQNQ 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~~~~~~~--~~q~~ 81 (163)
++++.|++ .++++++||+ |++||+++|+| ||||||||| ++++.|+.+| +. +.+.+...+++++ ++|++
T Consensus 4 ~l~~~~~~---~~~l~~isl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 4 DLTVSYGG---HPVLEDVSFE-VKPGEFLAIVG-PNGAGKSTL-LKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred cceeEECC---EEeeecceeE-EcCCCEEEEEC-CCCCCHHHH-HHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 56788863 4699999999 99999999999 999999999 6778888776 22 3343443455555 55554
Q ss_pred Cccc-c---------cCCCC--------C------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 82 SAQA-F---------LGPEN--------P------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 82 ~~~~-~---------~~~~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
.... + ..... . .+.+++.+++ .+..++++.+||||||||++|||||+ .
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~la~al~----~ 149 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGL----SELADRQIGELSGGQQQRVLLARALV----Q 149 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC----HHHHhCCcccCCHHHHHHHHHHHHHH----c
Confidence 2110 1 01000 0 1124455555 55677889999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.+.|
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l 175 (213)
T cd03235 150 DPDLLLLDEPFAGVDPKTQEDIYELL 175 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999887753
No 48
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.5e-32 Score=220.93 Aligned_cols=143 Identities=24% Similarity=0.239 Sum_probs=108.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|+. +.++++|+||+ |++||+++|+| +|||||||| ++++.++.+| + ++...+..++++++
T Consensus 9 ~l~~~~~~--~~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 9 DLHFRYKD--GTKALKGLSLS-IPEGSKTALLG-PNGAGKSTL-LLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred EEEEEeCC--CCeeeeeEEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 67788863 35699999999 99999999999 999999999 6778888776 1 23333445555555
Q ss_pred cccCCCccccc---------CCC--C--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 LAQNQSAQAFL---------GPE--N--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 ~~q~~~~~~~~---------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|++...++. ... . ....+++.+++ .+..++++.+||||||||++|||||+ .
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L----~~~~~~~~~~LSgG~~qrv~laraL~----~ 155 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM----WDFRDKPPYHLSYGQKKRVAIAGVLA----M 155 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC----HHHhcCChhhCCHHHHHHHHHHHHHH----c
Confidence 56665322221 110 0 01224555566 66788899999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++.++.++|
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l 181 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEIL 181 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 89999999999999999999988753
No 49
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=9.4e-33 Score=214.95 Aligned_cols=143 Identities=19% Similarity=0.140 Sum_probs=103.9
Q ss_pred cceeeCCCCCC-CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHHHHHHhc--cccC
Q psy17517 8 AQAFLGPENPE-EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLEDLRSMA--LAQN 80 (163)
Q Consensus 8 ~~~f~y~~~~~-~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~~~~~~~--~~q~ 80 (163)
+.++.|+.... .++++++||+ |++||+++|+| ||||||||| ++++.++.+| +. +.+.+....++.+ ++|.
T Consensus 5 ~l~~~~~~~~~~~~il~~vs~~-i~~G~~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~ 81 (220)
T cd03293 5 NVSKTYGGGGGAVTALEDISLS-VEEGEFVALVG-PSGCGKSTL-LRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQ 81 (220)
T ss_pred EEEEEcCCCCcceEEEeceeEE-EeCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEECccccCcEEEEecc
Confidence 56788864211 4799999999 99999999999 999999999 6778888766 22 2222222233444 4554
Q ss_pred CCcccccC------------CCC--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy17517 81 QSAQAFLG------------PEN--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP 140 (163)
Q Consensus 81 ~~~~~~~~------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ 140 (163)
+ .++.. ... ...++++.+++ .+..++++.+||||||||++|||||+ .+|+
T Consensus 82 ~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrl~la~al~----~~p~ 151 (220)
T cd03293 82 D--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGL----SGFENAYPHQLSGGMRQRVALARALA----VDPD 151 (220)
T ss_pred c--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----hhhhhCCcccCCHHHHHHHHHHHHHH----cCCC
Confidence 3 22210 000 01224555666 56778889999999999999999996 7899
Q ss_pred EEEeecccCCCCHHHHHHHHhhC
Q psy17517 141 FFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 141 lllLDEPts~LD~~~~~~i~~~l 163 (163)
++||||||++||+.++..+.++|
T Consensus 152 lllLDEPt~~LD~~~~~~~~~~l 174 (220)
T cd03293 152 VLLLDEPFSALDALTREQLQEEL 174 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988753
No 50
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.98 E-value=2.4e-32 Score=239.16 Aligned_cols=147 Identities=24% Similarity=0.321 Sum_probs=112.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|.|+++ +.++|+|+||+ +++||+++|+| ||||||||| .+++.++++| .++++.+..++|+++.+
T Consensus 343 ~v~f~y~~~-~~~il~~i~~~-i~~G~~~aivG-~sGsGKSTL-~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 418 (574)
T PRK11160 343 NVSFTYPDQ-PQPVLKGLSLQ-IKAGEKVALLG-RTGCGKSTL-LQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418 (574)
T ss_pred EEEEECCCC-CCcceecceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeE
Confidence 689999753 35799999999 99999999999 999999999 7888899887 35667788888888744
Q ss_pred cCCCcccc----------cCCCCCchh---HHHhchhcc------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 79 QNQSAQAF----------LGPENPEEP---YLQGVNYNC------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 79 q~~~~~~~----------~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
..++..+| ..++..+++ +++.+++.. +.+....+.+..||||||||++||||++ ++|
T Consensus 419 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall----~~~ 494 (574)
T PRK11160 419 VSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL----HDA 494 (574)
T ss_pred EcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh----cCC
Confidence 44433444 222223333 344444410 1122334578899999999999999995 899
Q ss_pred CEEEeecccCCCCHHHHHHHHhh
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++++||||||+||+.++.++.+.
T Consensus 495 ~ililDE~ts~lD~~t~~~i~~~ 517 (574)
T PRK11160 495 PLLLLDEPTEGLDAETERQILEL 517 (574)
T ss_pred CEEEEeCCcccCCHHHHHHHHHH
Confidence 99999999999999999998764
No 51
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.5e-32 Score=222.08 Aligned_cols=146 Identities=22% Similarity=0.286 Sum_probs=108.7
Q ss_pred ccceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccc----cCHHH
Q psy17517 7 SAQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRS----LGLED 71 (163)
Q Consensus 7 ~~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~----~~~~~ 71 (163)
.+++|.|+... ..++|+||||+ |++||+++|+| ||||||||| ++++.++..| + ++.. ....+
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 6 DNVSYTYQKGTPYEHQAIHDVNTE-FEQGKYYAIVG-QTGSGKSTL-IQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEECCCCccccCceeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 46788996422 24799999999 99999999999 999999999 6778888877 2 2221 12235
Q ss_pred HHHhc--cccCCCccccc---------CCCC---C-------chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GPEN---P-------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~~~---~-------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++++ ++|++...++. .... . ..++++.+++ . ...++++.+||||||||++|||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF----SRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC----ChhhhhCCcccCCHHHHHHHHHHH
Confidence 56665 77776434431 1100 0 1124555555 4 4677899999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.++|
T Consensus 159 aL~----~~p~illlDEPt~~LD~~~~~~l~~~l 188 (286)
T PRK13646 159 ILA----MNPDIIVLDEPTAGLDPQSKRQVMRLL 188 (286)
T ss_pred HHH----hCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 996 789999999999999999999987753
No 52
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=2.1e-32 Score=222.20 Aligned_cols=143 Identities=22% Similarity=0.277 Sum_probs=109.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c--cccccC----HHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A--TIRSLG----LEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~--~i~~~~----~~~~~~~~~~q 79 (163)
+++..|.. ++.+|+||||+ |++||+++++| ||||||||| ++++.++..| + .+.+.+ ..++++++.+.
T Consensus 9 ~l~k~~~~--~~~~l~~vs~~-i~~Gei~gllG-~NGAGKTTl-lk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 9 NLTKKYGG--DKTALDGVSFE-VEPGEIFGLLG-PNGAGKTTL-LKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred ceEEEeCC--CCEEEeceeEE-EcCCeEEEEEC-CCCCCHHHH-HHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 56667752 36899999999 99999999999 999999999 7888888887 2 222211 34667777444
Q ss_pred CCCccccc---------------CCC-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 80 NQSAQAFL---------------GPE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 80 ~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
.++..+|. +.. .+.+++++.+++ .+..++++..||+|||||++||+||+ ++|
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L----~~~~~~~~~~lS~G~kqrl~ia~aL~----~~P 155 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGL----EDKANKKVRTLSGGMKQRLSIALALL----HDP 155 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCC----chhhCcchhhcCHHHHHHHHHHHHHh----cCC
Confidence 33323331 111 123357778887 55568889999999999999999995 899
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||+||||.++.+++++|
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l 179 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELL 179 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHH
Confidence 999999999999999999998764
No 53
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.98 E-value=2.7e-32 Score=243.54 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=111.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|+|+. +.++|+|+||+ |++||.++|+| +|||||||| .+++.++++| .++++.+..++|+++.+
T Consensus 478 ~vsf~y~~--~~~iL~~isl~-i~~G~~vaIvG-~SGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 478 DVSYSYGY--GSNILSDISLT-IKMNSKTTIVG-MSGSGKSTL-AKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred EEEEEcCC--CCcceeceeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 78999974 36899999999 99999999999 999999999 6788899887 35667788889998854
Q ss_pred cCCCcccc---------cC--CCCCchhH---HHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 79 QNQSAQAF---------LG--PENPEEPY---LQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 79 q~~~~~~~---------~~--~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
..|+..+| ++ ++..++++ ++.+++. .+.+....+.+..||||||||++||||++ +
T Consensus 553 v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall----~ 628 (708)
T TIGR01193 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL----T 628 (708)
T ss_pred EecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh----h
Confidence 44443444 12 22333333 3322221 11133445678899999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|++++||||||+||+.++.++.+.
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~ 653 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNN 653 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH
Confidence 8999999999999999999998764
No 54
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2e-32 Score=221.80 Aligned_cols=145 Identities=24% Similarity=0.247 Sum_probs=107.5
Q ss_pred cceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccc----cCHHHH
Q psy17517 8 AQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRS----LGLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~----~~~~~~ 72 (163)
+++|.|+... ..++|+||||+ |.+||+++|+| ||||||||| ++++.++..| + ++.. .....+
T Consensus 7 ~l~~~y~~~~~~~~~~L~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (290)
T PRK13634 7 KVEHRYQYKTPFERRALYDVNVS-IPSGSYVAIIG-HTGSGKSTL-LQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPL 83 (290)
T ss_pred EEEEEECCCCcccccceeeEEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 6788896422 25799999999 99999999999 999999999 6778888776 1 2211 123345
Q ss_pred HHhc--cccCCCccccc---------CCCC----------CchhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHH
Q psy17517 73 RSMA--LAQNQSAQAFL---------GPEN----------PEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 73 ~~~~--~~q~~~~~~~~---------~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAra 130 (163)
++++ ++|++...++. .... ...++++.+++ . ...++++.+||||||||++||||
T Consensus 84 ~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~~LSgGq~qrv~lAra 159 (290)
T PRK13634 84 RKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGL----PEELLARSPFELSGGQMRRVAIAGV 159 (290)
T ss_pred HhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----ChhhhhCCcccCCHHHHHHHHHHHH
Confidence 5555 67776434431 1100 01224555565 4 45788999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ .+|+++||||||++||+.++..+.++|
T Consensus 160 L~----~~P~llllDEPt~~LD~~~~~~l~~~L 188 (290)
T PRK13634 160 LA----MEPEVLVLDEPTAGLDPKGRKEMMEMF 188 (290)
T ss_pred HH----cCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 96 789999999999999999999887753
No 55
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.98 E-value=2e-32 Score=208.76 Aligned_cols=135 Identities=27% Similarity=0.334 Sum_probs=99.7
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--cc-------cCHHHHHHhc--cccCCCcc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RS-------LGLEDLRSMA--LAQNQSAQ 84 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~-------~~~~~~~~~~--~~q~~~~~ 84 (163)
++.+++++||+ |.+||+++|+| ||||||||| ++++.++.+| +.+ .+ .+...+++.+ ++|++...
T Consensus 4 ~~~il~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFA-AERGEVLALLG-ANGAGKSTL-LLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 36799999999 99999999999 999999999 6778888776 211 11 1222445555 56654222
Q ss_pred ccc---------C---CCCC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEee
Q psy17517 85 AFL---------G---PENP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLD 145 (163)
Q Consensus 85 ~~~---------~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLD 145 (163)
++. . .... ..++++.+++ .+..++++.+||||||||++|||||+ ++|+++|||
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~----~~p~llllD 152 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA----SGLRERPTHCLSGGEKKRVAIAGAVA----MRPDVLLLD 152 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc----hhhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEc
Confidence 221 0 0000 1124455565 56778899999999999999999996 789999999
Q ss_pred cccCCCCHHHHHHHHhhC
Q psy17517 146 EIDAALDNTNIGKVASYI 163 (163)
Q Consensus 146 EPts~LD~~~~~~i~~~l 163 (163)
|||++||+.++..+.++|
T Consensus 153 EPt~~LD~~~~~~~~~~l 170 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAIL 170 (190)
T ss_pred CCcccCCHHHHHHHHHHH
Confidence 999999999999988753
No 56
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.98 E-value=3.3e-32 Score=206.33 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=103.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~~~ 78 (163)
+++|.|+. .++++++||+ +.+||+++|+| ||||||||| ++++.++.+| + ++...+..++++.+.+
T Consensus 4 ~l~~~~~~---~~~l~~~~~~-i~~G~~~~l~G-~nGsGKStL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 4 NLSVGYGG---RTVLDDLSLS-IEAGEIVGILG-PNGAGKSTL-LKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred EEEEEECC---eeeEeeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 56788863 5799999999 99999999999 999999999 6778888776 1 2333344444444422
Q ss_pred cCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 79 QNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 79 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
..+ +++.+++ .+..++.+.+||||||||++|||||+ .+|+++||||||++||+.++..
T Consensus 78 ~~q--------------~l~~~gl----~~~~~~~~~~LS~G~~qrl~laral~----~~p~llllDEP~~~LD~~~~~~ 135 (180)
T cd03214 78 VPQ--------------ALELLGL----AHLADRPFNELSGGERQRVLLARALA----QEPPILLLDEPTSHLDIAHQIE 135 (180)
T ss_pred HHH--------------HHHHcCC----HhHhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHH
Confidence 222 6777777 56677889999999999999999996 7899999999999999999998
Q ss_pred HHhhC
Q psy17517 159 VASYI 163 (163)
Q Consensus 159 i~~~l 163 (163)
+.+.|
T Consensus 136 ~~~~l 140 (180)
T cd03214 136 LLELL 140 (180)
T ss_pred HHHHH
Confidence 87653
No 57
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=4.2e-32 Score=213.06 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=105.3
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHH---HH-
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLED---LR- 73 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~---~~- 73 (163)
+++|.|+... ..++|+++||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+..+ ++
T Consensus 10 ~l~~~~~~~~~~~~il~~isl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (233)
T PRK11629 10 NLCKRYQEGSVQTDVLHNVSFS-IGEGEMMAIVG-SSGSGKSTL-LHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRN 86 (233)
T ss_pred eEEEEcCCCCcceeeEEeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHh
Confidence 6788897432 25799999999 99999999999 999999999 6778888776 1 233333322 22
Q ss_pred Hhc--cccCCCccccc---------------CCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 74 SMA--LAQNQSAQAFL---------------GPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 74 ~~~--~~q~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
+.+ ++|++ .++. .... ...++++.+++ .+..++++.+||||||||++|||||
T Consensus 87 ~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 87 QKLGFIYQFH--HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL----EHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred ccEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----chhhhCChhhCCHHHHHHHHHHHHH
Confidence 334 55554 2221 0000 01234556666 6677888999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.++|
T Consensus 161 ~----~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (233)
T PRK11629 161 V----NNPRLVLADEPTGNLDARNADSIFQLL 188 (233)
T ss_pred h----cCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 6 789999999999999999999887653
No 58
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=2.7e-32 Score=214.60 Aligned_cols=141 Identities=23% Similarity=0.278 Sum_probs=103.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccC---HHHHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLG---LEDLRSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~---~~~~~~~ 75 (163)
+.++.|++ +.++++|+||+ +.+||+++|+| ||||||||| ++++.++.+| + ++...+ ...+++.
T Consensus 5 ~l~~~~~~--~~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 5 NLSKTYPN--GKKALKDVSLS-INPGEFVALIG-PSGAGKSTL-LRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred eEEEecCC--ccEEEecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 57788864 25799999999 99999999999 999999999 6777888766 2 222222 2334555
Q ss_pred c--cccCCCccccc----------CCC--------------CC----chhHHHhchhcccCCCccCCCCCCCCHHHHHHH
Q psy17517 76 A--LAQNQSAQAFL----------GPE--------------NP----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVA 125 (163)
Q Consensus 76 ~--~~q~~~~~~~~----------~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrv 125 (163)
+ ++|++ .+|. ... .. ..++++.+++ ....++++.+||||||||+
T Consensus 80 i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 80 IGMIFQQF--NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL----LDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred cEEEcccC--cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC----hhhhCCCcccCCHHHHHHH
Confidence 5 44443 2221 000 00 0123455555 5667889999999999999
Q ss_pred HHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 126 ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 126 aiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 154 ~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l 187 (241)
T cd03256 154 AIARALM----QQPKLILADEPVASLDPASSRQVMDLL 187 (241)
T ss_pred HHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 9999996 789999999999999999999887753
No 59
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.98 E-value=3e-32 Score=229.47 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=109.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ +++|+++||+ |++||+++|+| ||||||||| ++++.++.+| .++...+..++++++
T Consensus 8 nls~~y~~---~~vL~~vs~~-i~~Geiv~liG-pNGaGKSTL-Lk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 8 DLSVEFGD---TTVLDGVDLS-VREGSLVGLVG-PNGAGKTTL-LRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEEECC---EEEEEeeEEE-ECCCCEEEEEC-CCCchHHHH-HHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 67788863 6799999999 99999999999 999999999 7778888877 134444556667666
Q ss_pred cccCCCccccc----------CC-------C---C----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 77 LAQNQSAQAFL----------GP-------E---N----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~-------~---~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++|++ .+++ .. . . ..+++++.+++ .+..++++.+||||||||++|||||+
T Consensus 82 v~q~~--~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl----~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 82 VPQDT--SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGV----AQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred EccCC--CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHHHHH
Confidence 45543 2221 10 0 0 01235566666 67888999999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|+++||||||++||+.++.+++++|
T Consensus 156 ----~~P~iLLLDEPtsgLD~~~~~~l~~lL 182 (402)
T PRK09536 156 ----QATPVLLLDEPTASLDINHQVRTLELV 182 (402)
T ss_pred ----cCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 889999999999999999999988753
No 60
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.98 E-value=3.4e-32 Score=211.28 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=105.5
Q ss_pred cceeeCCCCCC-CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc----CHHHHHHhc--
Q psy17517 8 AQAFLGPENPE-EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL----GLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~-~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~----~~~~~~~~~-- 76 (163)
++++.|++... .++++++||+ +++||+++|+| +|||||||| ++++.++.+| ++ +.+. ...++++++
T Consensus 6 ~v~~~~~~~~~~~~il~~~sl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 82 (218)
T cd03266 6 ALTKRFRDVKKTVQAVDGVSFT-VKPGEVTGLLG-PNGAGKTTT-LRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGF 82 (218)
T ss_pred EEEEecCCCCccceeecceEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEE
Confidence 67888964211 2799999999 99999999999 999999999 6778888776 21 1111 223455555
Q ss_pred cccCCCcccccC---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLG---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+|.. ... ...++++.+++ .+..++++.+||||||||++|||||+
T Consensus 83 ~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~---- 152 (218)
T cd03266 83 VSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM----EELLDRRVGGFSTGMRQKVAIARALV---- 152 (218)
T ss_pred ecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----HHHHhhhhhhcCHHHHHHHHHHHHHh----
Confidence 45544 22211 000 01225566666 56778899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 153 ~~p~illlDEPt~~LD~~~~~~l~~~l 179 (218)
T cd03266 153 HDPPVLLLDEPTTGLDVMATRALREFI 179 (218)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 61
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.6e-32 Score=224.04 Aligned_cols=145 Identities=23% Similarity=0.256 Sum_probs=108.0
Q ss_pred cceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc-------cccc---------
Q psy17517 8 AQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT-------IRSL--------- 67 (163)
Q Consensus 8 ~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~-------i~~~--------- 67 (163)
+++|.|+... +.++|+||||+ |++||+++|+| +|||||||| ++++.++..| +. +...
T Consensus 26 nl~~~y~~~~~~~~~~L~~vsl~-i~~Ge~~~I~G-~nGsGKSTL-l~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 102 (320)
T PRK13631 26 NLYCVFDEKQENELVALNNISYT-FEKNKIYFIIG-NSGSGKSTL-VTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITN 102 (320)
T ss_pred eEEEEeCCCCcccccceeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCeEEECCEEccccccccccccc
Confidence 6788997421 24699999999 99999999999 999999999 7778888877 11 2111
Q ss_pred -------CHHHHHHhc--cccCCCccccc---------CCC---CCc-------hhHHHhchhcccCC-CccCCCCCCCC
Q psy17517 68 -------GLEDLRSMA--LAQNQSAQAFL---------GPE---NPE-------EPYLQGVNYNCVAP-GKRFQPMTNLS 118 (163)
Q Consensus 68 -------~~~~~~~~~--~~q~~~~~~~~---------~~~---~~~-------~~~~~~~~~~~~~~-~~~~~~~~~LS 118 (163)
....+++++ ++|++..++|. +.. ... .++++.+++ . +..++.+.+||
T Consensus 103 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~~LS 178 (320)
T PRK13631 103 PYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGL----DDSYLERSPFGLS 178 (320)
T ss_pred ccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCC----ChhHhcCCcccCC
Confidence 233456665 67776434441 111 011 124455555 4 46788999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 119 GGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 119 gGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||||++|||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 179 gGqkqRvaiAraL~----~~p~iLLLDEPtsgLD~~~~~~l~~~L 219 (320)
T PRK13631 179 GGQKRRVAIAGILA----IQPEILIFDEPTAGLDPKGEHEMMQLI 219 (320)
T ss_pred HHHHHHHHHHHHHH----cCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 99999999999996 789999999999999999999987753
No 62
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.98 E-value=2.9e-32 Score=226.94 Aligned_cols=132 Identities=22% Similarity=0.221 Sum_probs=103.9
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHH----HHhc--cccCCC
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDL----RSMA--LAQNQS 82 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~----~~~~--~~q~~~ 82 (163)
++.+++|+||+ |++||+++|+| ||||||||| ++++.++.+| .++...+..++ ++.+ ++|.+
T Consensus 5 ~~~~l~~vs~~-i~~Gei~~l~G-~sGsGKSTL-Lr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~- 80 (363)
T TIGR01186 5 GKKGVNDADLA-IAKGEIFVIMG-LSGSGKSTT-VRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF- 80 (363)
T ss_pred CceeEEeeEEE-EcCCCEEEEEC-CCCChHHHH-HHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC-
Confidence 36799999999 99999999999 999999999 7888999887 24455555544 4455 55554
Q ss_pred cccccC----------C-----C-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 83 AQAFLG----------P-----E-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 83 ~~~~~~----------~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
.+|.. . . ....++++.+++ ....++++.+|||||||||+|||||+ .+|+++
T Consensus 81 -~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL----~~~~~~~p~~LSGGq~QRV~lARAL~----~~p~iL 151 (363)
T TIGR01186 81 -ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL----EEYEHRYPDELSGGMQQRVGLARALA----AEPDIL 151 (363)
T ss_pred -cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC----chhhhCChhhCCHHHHHHHHHHHHHh----cCCCEE
Confidence 23310 0 0 011235666676 67889999999999999999999996 789999
Q ss_pred EeecccCCCCHHHHHHHHhh
Q psy17517 143 VLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~ 162 (163)
|||||||+||+.++.++++.
T Consensus 152 LlDEP~saLD~~~r~~l~~~ 171 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDE 171 (363)
T ss_pred EEeCCcccCCHHHHHHHHHH
Confidence 99999999999999998875
No 63
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.2e-32 Score=220.44 Aligned_cols=144 Identities=23% Similarity=0.248 Sum_probs=106.9
Q ss_pred cceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccc----cCHHHH
Q psy17517 8 AQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRS----LGLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~----~~~~~~ 72 (163)
+++|.|+... ...+|+||||+ |++||+++|+| ||||||||| ++++.|+..| + ++.. ....++
T Consensus 6 ~v~~~y~~~~~~~~~~l~~vsl~-i~~Ge~v~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 82 (288)
T PRK13643 6 KVNYTYQPNSPFASRALFDIDLE-VKKGSYTALIG-HTGSGKSTL-LQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPV 82 (288)
T ss_pred EEEEEeCCCCcccccceeeeEEE-EcCCCEEEEEC-CCCChHHHH-HHHHhcCCCCCCcEEEECCEECccccccccHHHH
Confidence 6788997431 13699999999 99999999999 999999999 6778888877 1 2211 123345
Q ss_pred HHhc--cccCCCccccc---------CCCC---C-------chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHH
Q psy17517 73 RSMA--LAQNQSAQAFL---------GPEN---P-------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 73 ~~~~--~~q~~~~~~~~---------~~~~---~-------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAra 130 (163)
++.+ ++|+++..+|. .... . ..++++.+++ . ...++.+..||||||||++|||+
T Consensus 83 ~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L----~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 83 RKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGL----ADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----ChhhccCCcccCCHHHHHHHHHHHH
Confidence 6555 77876544441 1110 0 1123444454 3 45688999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+ .+|+++||||||++||+.++..+.+.
T Consensus 159 L~----~~p~illLDEPt~gLD~~~~~~l~~~ 186 (288)
T PRK13643 159 LA----MEPEVLVLDEPTAGLDPKARIEMMQL 186 (288)
T ss_pred HH----hCCCEEEEECCccCCCHHHHHHHHHH
Confidence 96 68999999999999999999988765
No 64
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=7e-32 Score=236.60 Aligned_cols=147 Identities=22% Similarity=0.220 Sum_probs=113.1
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|.||. +.++|+|+||+ |++||.++|+| +|||||||| ++++.++++| .++.+.+.+++++++.
T Consensus 344 ~~v~f~y~~--~~~il~~i~l~-i~~Ge~iaIvG-~SGsGKSTL-l~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 344 DNVSFAYRD--DNLVLQNINLS-VPSRGFVALVG-HTGSGKSTL-ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred EEEEEEeCC--CCceeeceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 378999984 35799999999 99999999999 999999999 7888999988 3566777888899885
Q ss_pred ccCCCccccc---------CCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 78 AQNQSAQAFL---------GPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 78 ~q~~~~~~~~---------~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
+..|+..+|. .....+++ +++.+++. .+.+....+.+..||||||||++|||||+ ++
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl----~~ 494 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV----QT 494 (592)
T ss_pred EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH----hC
Confidence 5555444441 22222232 34444431 11133445677899999999999999995 88
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|++++||||||+||+.+++++.+.
T Consensus 495 ~~illlDEpts~LD~~t~~~i~~~ 518 (592)
T PRK10790 495 PQILILDEATANIDSGTEQAIQQA 518 (592)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH
Confidence 999999999999999999988764
No 65
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-32 Score=223.00 Aligned_cols=145 Identities=23% Similarity=0.244 Sum_probs=108.4
Q ss_pred cceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccc---------------
Q psy17517 8 AQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRS--------------- 66 (163)
Q Consensus 8 ~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~--------------- 66 (163)
+++|.|++.. +.++|+||||+ |.+||+++|+| ||||||||| ++++.|+.+| +. +.+
T Consensus 7 ~l~~~y~~~~~~~~~~l~~vsl~-i~~Ge~v~iiG-~nGsGKSTL-l~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (305)
T PRK13651 7 NIVKIFNKKLPTELKALDNVSVE-INQGEFIAIIG-QTGSGKTTF-IEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKV 83 (305)
T ss_pred EEEEEECCCCCccccceeeeEEE-EeCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCCcEEEEeceeccccccccccccc
Confidence 6788997431 23699999999 99999999999 999999999 6778888876 21 110
Q ss_pred --------------cCHHHHHHhc--cccCCCccccc---------CCCC----------CchhHHHhchhcccCC-Ccc
Q psy17517 67 --------------LGLEDLRSMA--LAQNQSAQAFL---------GPEN----------PEEPYLQGVNYNCVAP-GKR 110 (163)
Q Consensus 67 --------------~~~~~~~~~~--~~q~~~~~~~~---------~~~~----------~~~~~~~~~~~~~~~~-~~~ 110 (163)
....++++++ ++|+++.+++. .... +..++++.+++ . +..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~ 159 (305)
T PRK13651 84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGL----DESYL 159 (305)
T ss_pred ccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC----Chhhh
Confidence 0223455555 78876544441 1110 11234555565 4 567
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 111 FQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 111 ~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++++.+||||||||++|||+|+ .+|+++||||||++||+.++..+.+.|
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~----~~P~lLlLDEPt~~LD~~~~~~l~~~l 208 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILA----MEPDFLVFDEPTAGLDPQGVKEILEIF 208 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999996 679999999999999999999887753
No 66
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=2.2e-32 Score=211.04 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=103.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c--cccccCH---HHHHHhc--cc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A--TIRSLGL---EDLRSMA--LA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~--~i~~~~~---~~~~~~~--~~ 78 (163)
+.+|.|++ .++++++||+ +++||+++|+| ||||||||| ++++.|+.+| + .+.+.+. .++++.+ ++
T Consensus 5 ~l~~~~~~---~~~l~~~~~~-i~~G~~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 5 DLTKTYGK---KRVLDDISLH-VKKGEIYGFLG-PNGAGKTTT-MKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred EEEEEECC---eEeEeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCcCCCceEEEECCCcccchHHHHhhEEEec
Confidence 56788853 5799999999 99999999999 999999999 6778888776 2 1222211 2344555 45
Q ss_pred cCCCcccccC-------------CCC---CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 79 QNQSAQAFLG-------------PEN---PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 79 q~~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
|++ .++.. ... ..+++++.+++ .+..++++.+||||||||++|||||+ .+|+++
T Consensus 79 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~la~al~----~~p~ll 148 (208)
T cd03268 79 EAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL----KDSAKKKVKGFSLGMKQRLGIALALL----GNPDLL 148 (208)
T ss_pred CCC--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCC----HHHHhhhHhhCCHHHHHHHHHHHHHh----cCCCEE
Confidence 543 22210 000 11234566666 56678889999999999999999996 789999
Q ss_pred EeecccCCCCHHHHHHHHhhC
Q psy17517 143 VLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~l 163 (163)
||||||++||+.++..+.++|
T Consensus 149 llDEPt~~LD~~~~~~l~~~l 169 (208)
T cd03268 149 ILDEPTNGLDPDGIKELRELI 169 (208)
T ss_pred EECCCcccCCHHHHHHHHHHH
Confidence 999999999999999887653
No 67
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=8.9e-33 Score=229.50 Aligned_cols=137 Identities=23% Similarity=0.206 Sum_probs=107.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ ..+|+|+||+ +++||+++|+| ||||||||| ++++.|+..| .++...+.. ++.+
T Consensus 9 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~l~G-psGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~ 80 (353)
T TIGR03265 9 NIRKRFGA---FTALKDISLS-VKKGEFVCLLG-PSGCGKTTL-LRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGI 80 (353)
T ss_pred EEEEEeCC---eEEEEeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 56778863 5699999999 99999999999 999999999 7888999877 133333332 3445
Q ss_pred cccCCCccccc----------CCC----------CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GPE----------NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+|. +.. ...+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 81 v~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L----~~~~~~~~~~LSgGq~QRvaLARaL~---- 150 (353)
T TIGR03265 81 VFQSY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGL----PGSERKYPGQLSGGQQQRVALARALA---- 150 (353)
T ss_pred EeCCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----CchhhCChhhCCHHHHHHHHHHHHHh----
Confidence 66654 2331 110 112346677777 78889999999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|++++||||+|+||+..+.++.+.
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~ 176 (353)
T TIGR03265 151 TSPGLLLLDEPLSALDARVREHLRTE 176 (353)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 78999999999999999999988764
No 68
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=3.7e-32 Score=221.85 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=105.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c--cccccC----HHHHHHhc--c
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A--TIRSLG----LEDLRSMA--L 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~--~i~~~~----~~~~~~~~--~ 77 (163)
+.++.|++ ..+|+||||+ |++||+++++| ||||||||| ++++.++..| + .+.+.+ ..+.++++ +
T Consensus 12 ~l~k~~~~---~~~l~~vsl~-i~~Gei~gllG-pNGaGKSTL-l~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 12 NVEKRYGD---KLVVDGLSFH-VQRGECFGLLG-PNGAGKTTT-LRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred eEEEEECC---eEEEecceEE-EeCCcEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 67788853 5799999999 99999999999 999999999 7778888877 2 122222 23455666 4
Q ss_pred ccCCCccccc-----------C----CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAFL-----------G----PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~~-----------~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+|++ .+|. . ... ...++++.+++ .+..++++..||||||||++|||||+ +
T Consensus 86 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~la~aL~----~ 155 (306)
T PRK13537 86 PQFD--NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL----ENKADAKVGELSGGMKRRLTLARALV----N 155 (306)
T ss_pred eccC--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----chHhcCchhhCCHHHHHHHHHHHHHh----C
Confidence 5443 3331 0 000 01134555565 67778899999999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..++++|
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l 181 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERL 181 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 89999999999999999999988753
No 69
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=2.7e-32 Score=217.81 Aligned_cols=139 Identities=22% Similarity=0.222 Sum_probs=105.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHHHHHHhc--cccCC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLEDLRSMA--LAQNQ 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~~~~~~~--~~q~~ 81 (163)
+.+|.|++ .++++++||+ |.+||+++|+| ||||||||| ++++.++.+| +. +.+.+...+++.+ ++|++
T Consensus 17 ~l~~~~~~---~~il~~isl~-i~~Ge~~~I~G-~NGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 17 AVSKRYGE---RTVLNQLDLH-IPAGQFVAVVG-RSGCGKSTL-LRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDA 90 (257)
T ss_pred EEEEEECC---cceeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCc
Confidence 56788853 5799999999 99999999999 999999999 6778888776 22 2333334455555 45543
Q ss_pred Cccccc----------CCCC----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecc
Q psy17517 82 SAQAFL----------GPEN----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEI 147 (163)
Q Consensus 82 ~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP 147 (163)
.++. .... ...++++.+++ .+..++++.+||||||||++|||+|+ .+|+++|||||
T Consensus 91 --~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgGqkqrl~laraL~----~~p~lllLDEP 160 (257)
T PRK11247 91 --RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGL----ADRANEWPAALSGGQKQRVALARALI----HRPGLLLLDEP 160 (257)
T ss_pred --cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCC----hhHhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCC
Confidence 2321 1111 11235566666 66778899999999999999999996 78999999999
Q ss_pred cCCCCHHHHHHHHhh
Q psy17517 148 DAALDNTNIGKVASY 162 (163)
Q Consensus 148 ts~LD~~~~~~i~~~ 162 (163)
|++||+.++..+.++
T Consensus 161 t~~LD~~~~~~l~~~ 175 (257)
T PRK11247 161 LGALDALTRIEMQDL 175 (257)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999988765
No 70
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=4.7e-32 Score=213.62 Aligned_cols=141 Identities=24% Similarity=0.299 Sum_probs=103.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH---HHHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL---EDLRSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~---~~~~~~ 75 (163)
++++.|+. +.++++|+||+ +.+||+++|+| ||||||||| ++++.++.+| + ++...+. ..+++.
T Consensus 6 ~l~~~~~~--~~~il~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 6 NLSKVYPN--GKQALKNINLN-INPGEFVAIIG-PSGAGKSTL-LRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eeeeecCC--CcceeecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 56788862 35799999999 99999999999 999999999 6778888776 2 2222221 234555
Q ss_pred c--cccCCCccccc----------CCCC------------------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHH
Q psy17517 76 A--LAQNQSAQAFL----------GPEN------------------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVA 125 (163)
Q Consensus 76 ~--~~q~~~~~~~~----------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrv 125 (163)
+ ++|++ .++. .... ...++++.+++ ....++++.+||||||||+
T Consensus 81 i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv 154 (243)
T TIGR02315 81 IGMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL----ADKAYQRADQLSGGQQQRV 154 (243)
T ss_pred eEEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc----HhhhcCCcccCCHHHHHHH
Confidence 5 45543 2221 1000 00124555555 5667889999999999999
Q ss_pred HHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 126 ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 126 aiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|||||+ .+|+++||||||++||+.++..+.++|
T Consensus 155 ~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l 188 (243)
T TIGR02315 155 AIARALA----QQPDLILADEPIASLDPKTSKQVMDYL 188 (243)
T ss_pred HHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 9999996 789999999999999999999887653
No 71
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=7.2e-32 Score=210.24 Aligned_cols=141 Identities=22% Similarity=0.222 Sum_probs=103.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHH---HHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLE---DLRSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~---~~~~~ 75 (163)
+.++.|+. +.++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| + ++...+.. .+++.
T Consensus 6 ~l~~~~~~--~~~~l~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 6 HVSKAYLG--GRQALQGVTFH-MRPGEMAFLTG-HSGAGKSTL-LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred eeEEEecC--CCeEEeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 56788853 35799999999 99999999999 999999999 6778888776 2 22222222 24455
Q ss_pred c--cccCCCccccc----------C--CCC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 76 A--LAQNQSAQAFL----------G--PEN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 76 ~--~~q~~~~~~~~----------~--~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
+ ++|++ .++. . ... . ..++++.+++ .+..++++.+||||||||++|||||+
T Consensus 81 i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~- 153 (222)
T PRK10908 81 IGMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGL----LDKAKNFPIQLSGGEQQRVGIARAVV- 153 (222)
T ss_pred eEEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCC----hhhhhCCchhCCHHHHHHHHHHHHHH-
Confidence 5 55554 2221 0 000 0 1124555555 56678889999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 154 ---~~p~llllDEPt~~LD~~~~~~l~~~l 180 (222)
T PRK10908 154 ---NKPAVLLADEPTGNLDDALSEGILRLF 180 (222)
T ss_pred ---cCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 72
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=5.7e-32 Score=210.28 Aligned_cols=142 Identities=23% Similarity=0.243 Sum_probs=104.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccC----HHHHHHhc--c
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLG----LEDLRSMA--L 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~----~~~~~~~~--~ 77 (163)
++++.|+++ .+++++|+||+ +++||+++|+| ||||||||| ++++.++.+| +. +.+.+ ..++++++ +
T Consensus 5 ~l~~~~~~~-~~~il~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 5 NLTKTYKKG-TKPAVDDLSLN-VYKGEIFGLLG-HNGAGKTTT-LKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred eeEEEeCCC-CceeecceEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 567888642 25799999999 99999999999 999999999 6778888776 21 11111 23445555 5
Q ss_pred ccCCCccccc---------------CCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAFL---------------GPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+|++ .++. .... ...++++.+++ .+..++++.+|||||+||++|||||+ .
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~la~al~----~ 150 (220)
T cd03263 81 PQFD--ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGL----TDKANKRARTLSGGMKRKLSLAIALI----G 150 (220)
T ss_pred cCcC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----HHHHhChhhhCCHHHHHHHHHHHHHh----c
Confidence 5544 2221 0000 01224555555 56677889999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.+.|
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l 176 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLI 176 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999987753
No 73
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=8.2e-32 Score=236.07 Aligned_cols=146 Identities=23% Similarity=0.258 Sum_probs=110.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|.||+ +.++|+|+||+ +++||.++|+| +|||||||| .+++.++++| .++.+++..++|+++.+
T Consensus 339 ~vsf~y~~--~~~iL~~inl~-i~~G~~v~IvG-~sGsGKSTL-l~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 339 DVSFSYDN--SRQGVEDVSFE-AKPGQTVAIVG-PTGAGKSTL-INLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EEEEEeCC--CCceecceeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 78999974 35699999999 99999999999 999999999 6788999887 24567777888888844
Q ss_pred cCCCcccc----------cCCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAF----------LGPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~----------~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..++..+| ..++..+++ +++.+++. .+.+....+.+..||||||||++|||||+ ++
T Consensus 414 v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall----~~ 489 (588)
T PRK13657 414 VFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL----KD 489 (588)
T ss_pred EecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh----cC
Confidence 44433344 222223333 33333331 11133345567889999999999999995 89
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|++++||||||+||+.++.++.+.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~ 513 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAA 513 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHH
Confidence 999999999999999999998764
No 74
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=4.2e-32 Score=213.03 Aligned_cols=140 Identities=22% Similarity=0.224 Sum_probs=104.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHH-HHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDL-RSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~-~~~~- 76 (163)
+.+|.|++ .++++++||+ |++||+++|+| ||||||||| ++++.|+.+| + ++...+...+ +..+
T Consensus 5 ~l~~~~~~---~~~l~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 5 GLTKRFGG---LVALDDVSFS-VRPGEIHGLIG-PNGAGKTTL-FNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred eeEEEECC---EEEecCceEE-ecCCcEEEEEC-CCCCCHHHH-HHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 67788863 5699999999 99999999999 999999999 6778888766 2 2333333333 3334
Q ss_pred -cccCCCccccc----------C--CC-C-----------------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHH
Q psy17517 77 -LAQNQSAQAFL----------G--PE-N-----------------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVA 125 (163)
Q Consensus 77 -~~q~~~~~~~~----------~--~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrv 125 (163)
++|++. ++. . .. . ...++++.+++ ....++++.+||||||||+
T Consensus 79 ~v~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 79 RTFQIPR--LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL----ADLADRPAGELSYGQQRRL 152 (236)
T ss_pred EEecccc--cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc----cchhhCChhhCCHHHHHHH
Confidence 455542 221 0 00 0 01224555565 6677889999999999999
Q ss_pred HHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 126 ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 126 aiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|||||+ .+|+++||||||++||+.++..+.++|
T Consensus 153 ~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l 186 (236)
T cd03219 153 EIARALA----TDPKLLLLDEPAAGLNPEETEELAELI 186 (236)
T ss_pred HHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 9999996 789999999999999999999888753
No 75
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=1.4e-32 Score=229.82 Aligned_cols=138 Identities=19% Similarity=0.167 Sum_probs=106.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ .++++++||+ +++||+++|+| ||||||||| +++++|+.+| .++...+.. ++.+
T Consensus 19 ~l~~~~~~---~~~l~~vsl~-i~~Ge~~~LlG-psGsGKSTL-Lr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 90 (375)
T PRK09452 19 GISKSFDG---KEVISNLDLT-INNGEFLTLLG-PSGCGKTTV-LRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNT 90 (375)
T ss_pred EEEEEECC---eEEEeeeEEE-EeCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 56778853 5799999999 99999999999 999999999 7888999887 133334433 3344
Q ss_pred cccCCCccccc----------CCC--C--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GPE--N--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+|. +.. . ..+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 91 vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~p~~LSgGq~QRVaLARaL~---- 160 (375)
T PRK09452 91 VFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL----EEFAQRKPHQLSGGQQQRVAIARAVV---- 160 (375)
T ss_pred EecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC----chhhhCChhhCCHHHHHHHHHHHHHh----
Confidence 66665 2331 111 0 11235566666 77889999999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++|||||+|+||+..+.++.+.|
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L 187 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNEL 187 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 76
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.97 E-value=5.8e-32 Score=220.16 Aligned_cols=132 Identities=22% Similarity=0.275 Sum_probs=100.4
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc----CHHHHHHhc--cccCCCcccccC
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL----GLEDLRSMA--LAQNQSAQAFLG 88 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~----~~~~~~~~~--~~q~~~~~~~~~ 88 (163)
+++|+|+||+ |++||+++|+| ||||||||| ++++.++..| +. +.+. ...++++++ ++|++ .++..
T Consensus 6 ~~~l~~vs~~-i~~Ge~~~l~G-~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~--~~~~~ 80 (302)
T TIGR01188 6 FKAVDGVNFK-VREGEVFGFLG-PNGAGKTTT-IRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYA--SVDED 80 (302)
T ss_pred eeEEeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCC--CCCCC
Confidence 5799999999 99999999999 999999999 7788888776 21 2121 223455556 44443 23211
Q ss_pred ---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeeccc
Q psy17517 89 ---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEID 148 (163)
Q Consensus 89 ---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPt 148 (163)
... ...++++.+++ .+..++++.+||||||||++|||||+ ++|+++||||||
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt 152 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFEL----GEAADRPVGTYSGGMRRRLDIAASLI----HQPDVLFLDEPT 152 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----hhHhCCchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCC
Confidence 000 11235666666 66788899999999999999999995 889999999999
Q ss_pred CCCCHHHHHHHHhhC
Q psy17517 149 AALDNTNIGKVASYI 163 (163)
Q Consensus 149 s~LD~~~~~~i~~~l 163 (163)
++||+.++..++++|
T Consensus 153 ~gLD~~~~~~l~~~l 167 (302)
T TIGR01188 153 TGLDPRTRRAIWDYI 167 (302)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999988753
No 77
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=6.3e-32 Score=208.91 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=104.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccc--cCHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRS--LGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~--~~~~~~~~~~ 76 (163)
+++|.|++ .++++++||+ +++||+++|+| ||||||||| ++++.|+.+| + ++.. .+...+++++
T Consensus 5 ~l~~~~~~---~~~l~~~s~~-i~~G~~~~l~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 5 NLHKSFGD---FHVLKGIDLT-VKKGEVVVIIG-PSGSGKSTL-LRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred EEEEEECC---eEeecCceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 67888864 5799999999 99999999999 999999999 6778888766 1 2211 1223445556
Q ss_pred cccCCCcccccC-------------CCCC--------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 LAQNQSAQAFLG-------------PENP--------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 ~~q~~~~~~~~~-------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
.+..++..++.. .... ..++++.+++ .+..++++.+|||||+||++|||||+
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~la~al~--- 151 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL----ADKADAYPAQLSGGQQQRVAIARALA--- 151 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC----HhHhhhCccccCHHHHHHHHHHHHHh---
Confidence 333332223210 0000 1224455555 56678899999999999999999996
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 152 -~~p~llllDEP~~~LD~~~~~~l~~~l 178 (213)
T cd03262 152 -MNPKVMLFDEPTSALDPELVGEVLDVM 178 (213)
T ss_pred -cCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 78
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.3e-32 Score=210.86 Aligned_cols=146 Identities=19% Similarity=0.182 Sum_probs=105.0
Q ss_pred ccceeeCCCC-CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHH---HHH
Q psy17517 7 SAQAFLGPEN-PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLE---DLR 73 (163)
Q Consensus 7 ~~~~f~y~~~-~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~---~~~ 73 (163)
.+.++.|++. ...++++++||+ |.+||+++|+| ||||||||| ++++.++.+| + ++...+.. .++
T Consensus 5 ~~l~~~~~~~~~~~~il~~~s~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 5 KNVSKVFGDTGGKVTALKDVSLS-VPKGEIFGIIG-RSGAGKSTL-IRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred ecceEEccCCCCceeeeecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 3677888642 112799999999 99999999999 999999999 6778888876 2 22222222 234
Q ss_pred HhccccCCCcccccCC------------CC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 74 SMALAQNQSAQAFLGP------------EN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 74 ~~~~~q~~~~~~~~~~------------~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
+.+.+..++..+|... .. . ..++++.+++ .+..++++.+||||||||++|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~la~al~- 156 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL----EDKADAYPAQLSGGQKQRVGIARALA- 156 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----hhhhhcChhhCCHHHHHHHHHHHHHh-
Confidence 5553333322233110 00 0 1224555565 56778899999999999999999995
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 157 ---~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 157 ---NNPKVLLCDEATSALDPETTQSILALL 183 (233)
T ss_pred ---cCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 79
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.8e-32 Score=212.99 Aligned_cols=141 Identities=19% Similarity=0.177 Sum_probs=104.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+++|.|++. .++++++||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+...+++.+
T Consensus 5 ~l~~~~~~~--~~~l~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 5 NVTKRYGGG--KKAVNNLNLE-IAKGEFLVLIG-PSGSGKTTT-MKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred EEEEEeCCc--ceEeeeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 577888642 5699999999 99999999999 999999999 6778888776 1 22333334455555
Q ss_pred cccCCCcccccC------------CCC--------CchhHHHhchhcccCCC--ccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 77 LAQNQSAQAFLG------------PEN--------PEEPYLQGVNYNCVAPG--KRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 77 ~~q~~~~~~~~~------------~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
++|++ .++.. ... ...++++.+++ .. ..++++.+||||||||++|||||+
T Consensus 80 ~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l----~~~~~~~~~~~~LS~G~~qrv~laral~-- 151 (242)
T cd03295 80 VIQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGL----DPAEFADRYPHELSGGQQQRVGVARALA-- 151 (242)
T ss_pred EccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----CcHHHHhcChhhCCHHHHHHHHHHHHHh--
Confidence 44543 22210 000 01234555665 43 678889999999999999999995
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 152 --~~p~llllDEPt~~LD~~~~~~l~~~L 178 (242)
T cd03295 152 --ADPPLLLMDEPFGALDPITRDQLQEEF 178 (242)
T ss_pred --cCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 80
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.97 E-value=1.1e-31 Score=234.01 Aligned_cols=147 Identities=22% Similarity=0.241 Sum_probs=111.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|+|++. +.++|+|+||+ |++||+++|+| +|||||||| ++++.|+++| .+++..+.+++++++.+
T Consensus 335 ~v~f~y~~~-~~~il~~inl~-i~~G~~v~IvG-~sGsGKSTL-l~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 410 (571)
T TIGR02203 335 NVTFRYPGR-DRPALDSISLV-IEPGETVALVG-RSGSGKSTL-VNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410 (571)
T ss_pred EEEEEcCCC-CCccccCeeEE-ecCCCEEEEEC-CCCCCHHHH-HHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence 789999754 45799999999 99999999999 999999999 6778888877 24566777788888744
Q ss_pred cCCCcccc----------cCC-CCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 79 QNQSAQAF----------LGP-ENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 79 q~~~~~~~----------~~~-~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
..|+..+| ... +..+++ +++.+++. .+.+....+....||||||||++||||++ +
T Consensus 411 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall----~ 486 (571)
T TIGR02203 411 VSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL----K 486 (571)
T ss_pred EccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh----c
Confidence 44433444 221 222222 34444431 11133445567889999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|++++||||||+||+.+++++.+.
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~ 511 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAA 511 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH
Confidence 8999999999999999999998764
No 81
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.9e-32 Score=228.84 Aligned_cols=148 Identities=28% Similarity=0.323 Sum_probs=117.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|+||+. ..++|+|+||+ +.+||.+||+| +|||||||+ +.++.+.++| .++..++...+|..+.+
T Consensus 341 ~vsF~y~~~-~~~~L~~~~l~-l~~GEkvAIlG-~SGsGKSTl-lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~v 416 (573)
T COG4987 341 NVSFTYPGQ-QTKALKNFNLT-LAQGEKVAILG-RSGSGKSTL-LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISV 416 (573)
T ss_pred cceeecCCC-ccchhhcccee-ecCCCeEEEEC-CCCCCHHHH-HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhh
Confidence 889999975 46899999999 99999999999 999999999 6778887777 34556666667777755
Q ss_pred cCCCcccc----------cCCCCCchh---HHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAF----------LGPENPEEP---YLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~----------~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
.+|...+| ..++..+|+ +++.+++.. +...+.++.+..|||||+||++|||+| +++
T Consensus 417 l~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~L----L~d 492 (573)
T COG4987 417 LTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL----LHD 492 (573)
T ss_pred hccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHH----HcC
Confidence 55544555 234444554 555665521 113467788999999999999999999 589
Q ss_pred CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.++++|||||.+||+.+++++++.|
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll 517 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALL 517 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHH
Confidence 9999999999999999999998753
No 82
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=7.9e-32 Score=210.52 Aligned_cols=140 Identities=23% Similarity=0.255 Sum_probs=101.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc-----cc--c-------cccccC--HHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH-----RI--A-------TIRSLG--LED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~-----~~--~-------~i~~~~--~~~ 71 (163)
+++|.|+. .++++|+||+ |.+||+++|+| ||||||||| ++++.|+. .| + ++...+ ...
T Consensus 5 ~l~~~~~~---~~~l~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 5 DLNVYYGD---KHALKDISLD-IPKGEITALIG-PSGCGKSTL-LRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred EEEEEcCC---ceeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 57888863 4799999999 99999999999 999999999 66777776 55 2 222222 233
Q ss_pred HHHhc--cccCCCccccc---------C--CC---C------CchhHHHhchhcccCCCccCCC--CCCCCHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G--PE---N------PEEPYLQGVNYNCVAPGKRFQP--MTNLSGGEKTVAAL 127 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~--~~---~------~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGqkQrvai 127 (163)
+++.+ ++|++ .++. . .. . ...++++.+++ .+..++. +.+||||||||++|
T Consensus 79 ~~~~i~~~~q~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~LSgG~~qrv~l 152 (227)
T cd03260 79 LRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL----WDEVKDRLHALGLSGGQQQRLCL 152 (227)
T ss_pred HHhhEEEEecCc--hhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCC----ChHHhccCCcccCCHHHHHHHHH
Confidence 45555 45554 2220 0 00 0 01124455555 4444555 59999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 153 a~al~----~~p~llllDEPt~~LD~~~~~~l~~~l 184 (227)
T cd03260 153 ARALA----NEPEVLLLDEPTSALDPISTAKIEELI 184 (227)
T ss_pred HHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 99996 789999999999999999999988753
No 83
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.6e-32 Score=210.17 Aligned_cols=140 Identities=20% Similarity=0.201 Sum_probs=103.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--ccc----CHHHHHHhc--c
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSL----GLEDLRSMA--L 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~----~~~~~~~~~--~ 77 (163)
+.++.|++ +++++|+||+ +.+||+++|+| ||||||||| ++++.|+..| +.+ .+. ...++++++ +
T Consensus 5 ~~~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 5 NLVKKYGD---FEAVRGVSFR-VRRGEIFGLLG-PNGAGKTTT-IKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred EEEEEECC---EEeeeceeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEe
Confidence 56777853 5799999999 99999999999 999999999 6778888766 211 111 123444455 5
Q ss_pred ccCCCccccc---------------CCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAFL---------------GPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+|++. ++. .... ...++++.+++ .+..++++.+||||||||++|||||+ .
T Consensus 79 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qr~~la~al~----~ 148 (220)
T cd03265 79 FQDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGL----LEAADRLVKTYSGGMRRRLEIARSLV----H 148 (220)
T ss_pred cCCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----HHHhhCChhhCCHHHHHHHHHHHHHh----c
Confidence 55542 221 0000 01234556666 56678899999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|++++|||||++||+.++..+.+.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l 174 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYI 174 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 89999999999999999999887653
No 84
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=7.7e-32 Score=207.47 Aligned_cols=142 Identities=21% Similarity=0.203 Sum_probs=103.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccc-----cCH---H-HHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRS-----LGL---E-DLRS 74 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~-----~~~---~-~~~~ 74 (163)
++++.|++ +++++|+||+ +.+||+++|+| ||||||||| ++++.|+.+| +. +.+ ... . ..++
T Consensus 3 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 76 (206)
T TIGR03608 3 NISKKFGD---KIILDDLNLT-IEKGKMYAIIG-ESGSGKSTL-LNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRRE 76 (206)
T ss_pred ceEEEECC---EEEEeceEEE-EeCCcEEEEEC-CCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHh
Confidence 56788863 5799999999 99999999999 999999999 6778888776 21 111 111 1 2344
Q ss_pred hccccCCCcccccC---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 75 MALAQNQSAQAFLG---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 75 ~~~~q~~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
.+.+..++..++.. ... ...++++.+++ .+..++++.+|||||+||++|||||+
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~lS~G~~qr~~laral~-- 150 (206)
T TIGR03608 77 KLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL----NLKLKQKIYELSGGEQQRVALARAIL-- 150 (206)
T ss_pred CeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCc----hhhhcCChhhCCHHHHHHHHHHHHHH--
Confidence 45333332223210 000 01224555565 56778889999999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 151 --~~p~llllDEPt~~LD~~~~~~l~~~l 177 (206)
T TIGR03608 151 --KDPPLILADEPTGSLDPKNRDEVLDLL 177 (206)
T ss_pred --cCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 789999999999999999999987753
No 85
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=3.2e-32 Score=226.19 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=105.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ .++++|+||+ |++||+++|+| ||||||||| ++++.|+.+| + ++...+. .++++
T Consensus 7 ~l~~~~~~---~~~l~~isl~-i~~Ge~~~llG-psGsGKSTL-Lr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 7 NIKKSFGR---TQVLNDISLD-IPSGQMVALLG-PSGSGKTTL-LRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEeCC---eEEEEEeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 56778853 5799999999 99999999999 999999999 7888888877 1 2333332 23445
Q ss_pred cccCCCccccc----------CCC------C--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 77 LAQNQSAQAFL----------GPE------N--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
+||++ .+|. ... . ...++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 79 v~Q~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L----~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 79 VFQHY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQL----AHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred EecCc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCC----chhhhCChhhCCHHHHHHHHHHHHHh
Confidence 56654 2321 111 0 11235666666 67889999999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+..+.++.+.|
T Consensus 153 ----~~P~llLLDEP~s~LD~~~r~~l~~~L 179 (353)
T PRK10851 153 ----VEPQILLLDEPFGALDAQVRKELRRWL 179 (353)
T ss_pred ----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 86
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=228.66 Aligned_cols=147 Identities=24% Similarity=0.282 Sum_probs=115.1
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~- 76 (163)
.+.+|.||++ .++++|+||+ +++|+.++++| +|||||||| +.++.|+..| .++.+.+...+|+++
T Consensus 324 ~~l~~~y~~g--~~~l~~l~~t-~~~g~~talvG-~SGaGKSTL-l~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 324 ENLSFRYPDG--KPALSDLNLT-IKAGQLTALVG-ASGAGKSTL-LNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred cceEEecCCC--CcccCCceeE-ecCCcEEEEEC-CCCCCHHHH-HHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 3778999864 4899999999 99999999999 999999999 7888888887 346677778899998
Q ss_pred -cccCC--------CcccccCCCCCchh---HHHhchhcc------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 77 -LAQNQ--------SAQAFLGPENPEEP---YLQGVNYNC------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 77 -~~q~~--------~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
+.|+| +|..+..+...+++ +++..++.. +.+....+.+..|||||+||+++|||| +++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAl----l~~ 474 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARAL----LSP 474 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHh----cCC
Confidence 66666 33333344333443 444444421 123345567888999999999999999 588
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++++++|||||+||.+++..|.+.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~ 498 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQA 498 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHH
Confidence 999999999999999999998874
No 87
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=1.6e-31 Score=232.51 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=109.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|.|+++ +.++++|+||+ +++||.++|+| ||||||||| .+++.++++| .++...+..++++.+.+
T Consensus 321 ~v~~~y~~~-~~~~l~~~~~~-i~~G~~~~ivG-~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 396 (544)
T TIGR01842 321 NVTIVPPGG-KKPTLRGISFR-LQAGEALAIIG-PSGSGKSTL-ARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY 396 (544)
T ss_pred EEEEEcCCC-CccccccceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEE
Confidence 678999753 46799999999 99999999999 999999999 6778888877 24455666677877744
Q ss_pred cCCCcccc----------cCCCCCchhH---HHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAF----------LGPENPEEPY---LQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~----------~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..++..+| ......++++ ++..++. .+.+...++.+.+||||||||++||||++ ++
T Consensus 397 v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall----~~ 472 (544)
T TIGR01842 397 LPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY----GD 472 (544)
T ss_pred ecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh----cC
Confidence 44433333 1222223332 2222211 11134556778999999999999999994 89
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|++++||||||+||+.++.++.+.
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~ 496 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANA 496 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHH
Confidence 999999999999999999988764
No 88
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=8.1e-32 Score=210.91 Aligned_cols=140 Identities=21% Similarity=0.261 Sum_probs=103.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHH-HHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDL-RSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~-~~~~- 76 (163)
+.++.|++ .++++|+||+ +.+||+++|+| ||||||||| ++++.++.+| + ++...+.... +..+
T Consensus 5 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 5 NLSKRYGK---RKVVNGVSLS-VKQGEIVGLLG-PNGAGKTTT-FYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred EEEEEeCC---EEeeccceeE-ecCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 56788863 5799999999 99999999999 999999999 6778888776 2 2222232232 2334
Q ss_pred -cccCCCcccccC------------CCC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 -LAQNQSAQAFLG------------PEN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 -~~q~~~~~~~~~------------~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
++|.+ .++.. ... . .+++++.+++ .+..++.+.+||||||||++|||||+
T Consensus 79 ~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~la~al~--- 149 (232)
T cd03218 79 YLPQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI----THLRKSKASSLSGGERRRVEIARALA--- 149 (232)
T ss_pred EecCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----hhhhhCChhhCCHHHHHHHHHHHHHh---
Confidence 45544 22210 000 0 1124555555 56778899999999999999999996
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 150 -~~p~llllDEPt~~LD~~~~~~~~~~l 176 (232)
T cd03218 150 -TNPKFLLLDEPFAGVDPIAVQDIQKII 176 (232)
T ss_pred -cCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 89
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7e-32 Score=208.69 Aligned_cols=138 Identities=19% Similarity=0.249 Sum_probs=102.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|+. .++++|+||+ +++| +++|+| ||||||||| ++++.++.+| + ++...+ .++++.+
T Consensus 5 ~~~~~~~~---~~~l~~vs~~-i~~g-~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 5 NLTKRYGK---KRALDGVSLT-LGPG-MYGLLG-PNGAGKTTL-MRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred EEEEEECC---EEEEcceeEE-EcCC-cEEEEC-CCCCCHHHH-HHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 56788853 4799999999 9999 999999 999999999 6778888776 2 222222 3445555
Q ss_pred cccCCCcccccC---------------CCCC-----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLG---------------PENP-----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+|.. .... ..++++.+++ .+..+.++.+||||||||++|||||+
T Consensus 77 ~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~la~al~---- 146 (211)
T cd03264 77 LPQEF--GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL----GDRAKKKIGSLSGGMRRRVGIAQALV---- 146 (211)
T ss_pred ecCCC--cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC----HHHHhCchhhCCHHHHHHHHHHHHHh----
Confidence 45554 22211 0000 1124555555 55667889999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l 173 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLL 173 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999987753
No 90
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=1.4e-31 Score=208.90 Aligned_cols=143 Identities=24% Similarity=0.332 Sum_probs=103.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc-------ccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT-------IRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~-------i~~~~~~~~~~~~-- 76 (163)
+.++.|++..+.++++++||+ |.+||+++|+| ||||||||| ++++.++.+| +. +...+...+++++
T Consensus 16 ~l~~~~~~~~~~~~l~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 92 (226)
T cd03248 16 NVTFAYPTRPDTLVLQDVSFT-LHPGEVTALVG-PSGSGKSTV-VALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSL 92 (226)
T ss_pred EEEEEeCCCCCCccccceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEE
Confidence 567788753335799999999 99999999999 999999999 6778888776 21 2222233445555
Q ss_pred cccCCCccccc---------CCCCC-c------------hhHHHhc--hhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 77 LAQNQSAQAFL---------GPENP-E------------EPYLQGV--NYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 77 ~~q~~~~~~~~---------~~~~~-~------------~~~~~~~--~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++|++ .+|. ..... . +++++.+ ++ .+..+.++.+||||||||++|||+|+
T Consensus 93 ~~q~~--~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl----~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 93 VGQEP--VLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGY----DTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred Eeccc--HHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccc----cchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 45544 2221 11110 0 1123333 33 55678889999999999999999995
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 167 ----~~p~llllDEPt~~LD~~~~~~l~~~l 193 (226)
T cd03248 167 ----RNPQVLILDEATSALDAESEQQVQQAL 193 (226)
T ss_pred ----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 91
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-32 Score=228.31 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=104.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ ..+|+|+||+ |++||+++|+| ||||||||| ++++.|+..| + ++...+. .++.+
T Consensus 8 ~l~~~~~~---~~vl~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-L~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 8 NVTKAYGD---VVISKDINLD-IHEGEFVVFVG-PSGCGKSTL-LRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEeCC---eEEEeeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 56788853 5799999999 99999999999 999999999 7788888876 2 2222332 23444
Q ss_pred cccCCCccccc----------CCC--C--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GPE--N--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+|. ... . ..+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 80 v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL----~~~~~~~~~~LSgGq~QRvaLAraL~---- 149 (369)
T PRK11000 80 VFQSY--ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQL----AHLLDRKPKALSGGQRQRVAIGRTLV---- 149 (369)
T ss_pred EeCCc--ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC----hhhhcCChhhCCHHHHHHHHHHHHHh----
Confidence 56654 2221 110 0 11235666666 67788999999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|+++||||||++||+.++.++.+.
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~ 175 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIE 175 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 78999999999999999999988764
No 92
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.97 E-value=6.7e-32 Score=208.92 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=101.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|++ .++++|+||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+. .++++
T Consensus 5 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03301 5 NVTKRFGN---VTALDDLNLD-IADGEFVVLLG-PSGCGKTTT-LRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAM 76 (213)
T ss_pred eeEEEECC---eeeeeceEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCCc--ccceEEE
Confidence 56788863 4799999999 99999999999 999999999 6778888766 2 2222221 12334
Q ss_pred cccCCCcccccC------------CCC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLG------------PEN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~------------~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|.+ .++.. ... . ..++++.+++ .+..++++.+||||||||++|||||+
T Consensus 77 ~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qr~~laral~---- 146 (213)
T cd03301 77 VFQNY--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI----EHLLDRKPKQLSGGQRQRVALGRAIV---- 146 (213)
T ss_pred EecCh--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----HHHHhCChhhCCHHHHHHHHHHHHHh----
Confidence 44443 22210 000 0 0124555555 56778899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|++++|||||++||+.++..+.+.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAEL 173 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 93
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.97 E-value=1.5e-31 Score=233.45 Aligned_cols=148 Identities=26% Similarity=0.328 Sum_probs=109.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|.||+..+.++|+|+||+ +++||.++|+| +|||||||| ++++.|+++| .++++.+..++++++.+
T Consensus 342 ~v~f~y~~~~~~~iL~~inl~-i~~Ge~i~IvG-~sGsGKSTL-lklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~ 418 (576)
T TIGR02204 342 QVNFAYPARPDQPALDGLNLT-VRPGETVALVG-PSGAGKSTL-FQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMAL 418 (576)
T ss_pred EEEEECCCCCCCccccceeEE-ecCCCEEEEEC-CCCCCHHHH-HHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceE
Confidence 678999864346799999999 99999999999 999999999 6778888877 23456667788888744
Q ss_pred cCCCcccc----------cCCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAF----------LGPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~----------~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
.+++..+| ..++..+++ +++.+++. .+.+....+....||||||||+++|||++ ++
T Consensus 419 ~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~----~~ 494 (576)
T TIGR02204 419 VPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL----KD 494 (576)
T ss_pred EccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH----hC
Confidence 33333333 222222233 33333331 01123344567889999999999999995 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|++++||||||+||+.+++.+.+.
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~ 518 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQA 518 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHH
Confidence 999999999999999999988764
No 94
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=9.4e-32 Score=219.02 Aligned_cols=140 Identities=17% Similarity=0.138 Sum_probs=103.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--ccc----CHHHHHHhc--c
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSL----GLEDLRSMA--L 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~----~~~~~~~~~--~ 77 (163)
+.++.|++ .++|+||||+ |++||+++|+| ||||||||| ++++.++..| +.+ .+. ....+++++ +
T Consensus 9 ~l~~~~~~---~~~l~~vsl~-i~~Ge~~~l~G-~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 9 GVSKSYGD---KVVVNDLSFT-IARGECFGLLG-PNGAGKSTI-ARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred eEEEEeCC---eEEEcceeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 67788853 5799999999 99999999999 999999999 6778888776 221 111 123345555 4
Q ss_pred ccCCCccccc-----------C-C-CCC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAFL-----------G-P-ENP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~~-----------~-~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+|++ .++. . . ... .+.+++.+++ .+..++++.+||||||||++|||||+ +
T Consensus 83 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l----~~~~~~~~~~LSgG~~qrv~la~al~----~ 152 (303)
T TIGR01288 83 PQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL----ESKADVRVALLSGGMKRRLTLARALI----N 152 (303)
T ss_pred eccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----hhHhcCchhhCCHHHHHHHHHHHHHh----c
Confidence 5544 2221 0 0 000 1124455555 56778899999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.+.|
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l 178 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERL 178 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 89999999999999999999988753
No 95
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=2.5e-32 Score=227.48 Aligned_cols=138 Identities=21% Similarity=0.158 Sum_probs=106.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccccc-----------ccccCHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIAT-----------IRSLGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~-----------i~~~~~~~~~~~~ 76 (163)
++++.|++ ..+|+|+||+ |.+||+++|+| ||||||||| ++++.|+..|.. +...+. .++.+
T Consensus 10 ~l~~~~~~---~~~l~~vsl~-i~~Ge~~~llG-psGsGKSTL-Lr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~i 81 (362)
T TIGR03258 10 HLRVAYGA---NTVLDDLSLE-IEAGELLALIG-KSGCGKTTL-LRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGL 81 (362)
T ss_pred EEEEEECC---eEEEeeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCE
Confidence 66788853 5799999999 99999999999 999999999 788888887633 222232 23444
Q ss_pred --cccCCCccccc----------CCC----------CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 77 --LAQNQSAQAFL----------GPE----------NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 77 --~~q~~~~~~~~----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
+||++ .+|. +.. .+.+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 82 g~vfQ~~--~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL----~~~~~~~~~~LSgGq~QRvaLARAL~-- 153 (362)
T TIGR03258 82 ALLFQNY--ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL----GDAAAHLPAQLSGGMQQRIAIARAIA-- 153 (362)
T ss_pred EEEECCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC----CchhhCChhhCCHHHHHHHHHHHHHh--
Confidence 66665 2331 110 011235666677 78889999999999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|++++||||||+||+..+.++.+.|
T Consensus 154 --~~P~llLLDEP~s~LD~~~r~~l~~~l 180 (362)
T TIGR03258 154 --IEPDVLLLDEPLSALDANIRANMREEI 180 (362)
T ss_pred --cCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 96
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=1e-31 Score=222.16 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=105.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c--ccccc----CHHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A--TIRSL----GLEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~--~i~~~----~~~~~~~~~~~q 79 (163)
++++.|++ ..+|+||||+ |++||+++++| ||||||||| ++++.++..| + .+.+. ...+.++.+.+.
T Consensus 46 nl~k~y~~---~~~l~~is~~-i~~Gei~gLlG-pNGaGKSTL-l~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 46 GVSKSYGD---KAVVNGLSFT-VASGECFGLLG-PNGAGKSTI-ARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred EEEEEECC---EEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHcCCCCCceEEEECCEECCcchHHHhccEEEE
Confidence 56778853 5799999999 99999999999 999999999 7788888877 2 12221 123455556333
Q ss_pred CCCccccc-----------C-C-CCC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 80 NQSAQAFL-----------G-P-ENP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 80 ~~~~~~~~-----------~-~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
.++..++. . . ... .+++++.+++ .+..++++.+||||||||++|||||+ ++|
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L----~~~~~~~~~~LS~G~kqrv~lA~aL~----~~P 191 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL----ESKADARVSDLSGGMKRRLTLARALI----NDP 191 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----chhhCCChhhCCHHHHHHHHHHHHHh----cCC
Confidence 33222321 0 0 011 1124555555 67788899999999999999999996 889
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||++||+.++.+++++|
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l 215 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERL 215 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH
Confidence 999999999999999999998764
No 97
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.9e-31 Score=205.70 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=102.0
Q ss_pred ccceeeCCCC-CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc---c--cc--ccccCH----HHHHH
Q psy17517 7 SAQAFLGPEN-PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR---I--AT--IRSLGL----EDLRS 74 (163)
Q Consensus 7 ~~~~f~y~~~-~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~---~--~~--i~~~~~----~~~~~ 74 (163)
.+++|.|+.. +++.+++++||+ |++||+++|+| ||||||||| ++++.++.+ | +. +.+.+. ...++
T Consensus 7 ~~~~~~~~~~~~~~~il~~~s~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 83 (202)
T cd03233 7 RNISFTTGKGRSKIPILKDFSGV-VKPGEMVLVLG-RPGSGCSTL-LKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG 83 (202)
T ss_pred EccEEEeccCCCCceeeeeEEEE-ECCCcEEEEEC-CCCCCHHHH-HHHhcccCCCCCCcceEEEECCEECccchhhhcc
Confidence 4789999853 456899999999 99999999999 999999999 677888877 4 21 112111 23344
Q ss_pred hccccCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHH
Q psy17517 75 MALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNT 154 (163)
Q Consensus 75 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~ 154 (163)
.+.+..++..++... ...+ .+.+.. ....++++..|||||+||++|||||+ ++|+++||||||++||+.
T Consensus 84 ~i~~~~q~~~~~~~~--tv~~---~l~~~~--~~~~~~~~~~LS~Ge~qrl~laral~----~~p~llllDEPt~~LD~~ 152 (202)
T cd03233 84 EIIYVSEEDVHFPTL--TVRE---TLDFAL--RCKGNEFVRGISGGERKRVSIAEALV----SRASVLCWDNSTRGLDSS 152 (202)
T ss_pred eEEEEecccccCCCC--cHHH---HHhhhh--hhccccchhhCCHHHHHHHHHHHHHh----hCCCEEEEcCCCccCCHH
Confidence 453333333333221 1112 111100 00166788999999999999999996 789999999999999999
Q ss_pred HHHHHHhhC
Q psy17517 155 NIGKVASYI 163 (163)
Q Consensus 155 ~~~~i~~~l 163 (163)
++..+.+.|
T Consensus 153 ~~~~~~~~l 161 (202)
T cd03233 153 TALEILKCI 161 (202)
T ss_pred HHHHHHHHH
Confidence 999988753
No 98
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.2e-32 Score=221.30 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=103.8
Q ss_pred cceeeCCCCCC-CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------------ccccccCHHHHH
Q psy17517 8 AQAFLGPENPE-EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------------ATIRSLGLEDLR 73 (163)
Q Consensus 8 ~~~f~y~~~~~-~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------------~~i~~~~~~~~~ 73 (163)
+.++.|+...+ .++|+||||+ |.+||+++|+| +|||||||| .+++.++..+ .++...+..+++
T Consensus 8 ~l~~~~~~~~~~~~~l~~vsl~-i~~Ge~~~lvG-~sGsGKSTL-~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~ 84 (326)
T PRK11022 8 KLSVHFGDESAPFRAVDRISYS-VKQGEVVGIVG-ESGSGKSVS-SLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERR 84 (326)
T ss_pred CeEEEECCCCccEEEEeeeEEE-ECCCCEEEEEC-CCCChHHHH-HHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHH
Confidence 56677764322 4699999999 99999999999 999999999 4556666542 133344444333
Q ss_pred H----hc--cccCCCcccccC-------------C-CCC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHH
Q psy17517 74 S----MA--LAQNQSAQAFLG-------------P-ENP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAA 126 (163)
Q Consensus 74 ~----~~--~~q~~~~~~~~~-------------~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrva 126 (163)
+ .+ ++|++...++.. . ... ..++++.+++.. .....++++.+|||||+|||+
T Consensus 85 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~-~~~~l~~~p~~LSgGq~QRv~ 163 (326)
T PRK11022 85 NLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD-PASRLDVYPHQLSGGMSQRVM 163 (326)
T ss_pred HHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC-hHHHHhCCchhCCHHHHHHHH
Confidence 2 34 777763222210 0 000 123556666510 012467899999999999999
Q ss_pred HHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 127 LALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 127 iAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||||+ .+|+++|+||||++||+.++.+++++|
T Consensus 164 iArAL~----~~P~llilDEPts~LD~~~~~~il~lL 196 (326)
T PRK11022 164 IAMAIA----CRPKLLIADEPTTALDVTIQAQIIELL 196 (326)
T ss_pred HHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 999996 689999999999999999999988753
No 99
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.3e-32 Score=222.80 Aligned_cols=134 Identities=22% Similarity=0.172 Sum_probs=100.2
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHH---HHHHhc--cccCCCcc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLE---DLRSMA--LAQNQSAQ 84 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~---~~~~~~--~~q~~~~~ 84 (163)
.++++||||+ |.+||+++|+| +|||||||| .+++.++..+ .++...+.. .+|+++ +||++...
T Consensus 28 ~~~l~~vsl~-i~~Ge~~~IvG-~sGsGKSTL-l~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFT-LERGKTLAVVG-ESGCGKSTL-ARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEE-ECCCCEEEEEC-CCCCcHHHH-HHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 5799999999 99999999999 999999999 5667777766 233333322 345555 77776322
Q ss_pred ccc----------------CCCC-----CchhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 85 AFL----------------GPEN-----PEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 85 ~~~----------------~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
++. .... ...++++.+++ . ...++++.+|||||+||++|||||+ .+|++|
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~p~~LSgGq~QRv~iArAL~----~~P~lL 176 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGL----RPEHYDRYPHMFSGGQRQRIAIARALM----LDPDVV 176 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCC----ChHHhcCCCccCCHHHHHHHHHHHHHH----cCCCEE
Confidence 221 0000 01235556665 3 3568899999999999999999996 789999
Q ss_pred EeecccCCCCHHHHHHHHhhC
Q psy17517 143 VLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~l 163 (163)
|+||||++||+.++.+++++|
T Consensus 177 ilDEPts~LD~~~~~~i~~lL 197 (327)
T PRK11308 177 VADEPVSALDVSVQAQVLNLM 197 (327)
T ss_pred EEECCCccCCHHHHHHHHHHH
Confidence 999999999999999988753
No 100
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=5.5e-32 Score=203.84 Aligned_cols=138 Identities=20% Similarity=0.160 Sum_probs=107.1
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.++.|+|... ==.++++ |++||+++|+| ||||||||| ++++.|+..| .++...++.+..-.++
T Consensus 5 ~~V~~~y~~~-----~~~fdl~-v~~ge~vAi~G-pSGaGKSTL-LnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 5 DDVRFSYGHL-----PMRFDLT-VPAGEIVAILG-PSGAGKSTL-LNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred cceEEeeCcc-----eEEEEEe-ecCCcEEEEEC-CCCccHHHH-HHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 3678999642 2257788 99999999999 999999999 8899999988 2444445444444456
Q ss_pred ccCCCcccccC----------------CCC----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAFLG----------------PEN----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~~~----------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
||+ |++|.. +.. ..+.++..+|+ .+..++.|.+||||||||||+||+| ++
T Consensus 77 FQE--nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl----~~~~~RLP~~LSGGqRQRvALARcl----vR 146 (231)
T COG3840 77 FQE--NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL----AGFLKRLPGELSGGQRQRVALARCL----VR 146 (231)
T ss_pred hhc--cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhCh----hhHhhhCccccCchHHHHHHHHHHH----hc
Confidence 654 455521 111 11336677788 8999999999999999999999999 58
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+-+|++||||+|+|||..+.++..+
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~L 171 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLAL 171 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHH
Confidence 8999999999999999999988765
No 101
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=1.4e-31 Score=206.09 Aligned_cols=142 Identities=21% Similarity=0.295 Sum_probs=103.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--cccC----HHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSLG----LEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~~----~~~~~~~~~~q 79 (163)
+.++.|+. ..+++|+||+ |++||+++|+| +|||||||| ++++.++.+| +.+ .+.+ ...+++++.+.
T Consensus 5 ~l~~~~~~---~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (201)
T cd03231 5 ELTCERDG---RALFSGLSFT-LAAGEALQVTG-PNGSGKTTL-LRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78 (201)
T ss_pred EEEEEeCC---ceeeccceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccccHHhhhheEEe
Confidence 56777853 5799999999 99999999999 999999999 7778888776 211 1111 12345555333
Q ss_pred CCCcccc-----------cCCCC---CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEee
Q psy17517 80 NQSAQAF-----------LGPEN---PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLD 145 (163)
Q Consensus 80 ~~~~~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLD 145 (163)
.++..++ ..... ..+++++.+++ .+..++++.+||||||||++|||||+ .+|+++|||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~laral~----~~p~llllD 150 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGL----NGFEDRPVAQLSAGQQRRVALARLLL----SGRPLWILD 150 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCC----hhhhcCchhhCCHHHHHHHHHHHHHh----cCCCEEEEe
Confidence 2222222 11111 11235566666 56678889999999999999999996 789999999
Q ss_pred cccCCCCHHHHHHHHhhC
Q psy17517 146 EIDAALDNTNIGKVASYI 163 (163)
Q Consensus 146 EPts~LD~~~~~~i~~~l 163 (163)
|||++||+.++..+.+.|
T Consensus 151 EPt~~LD~~~~~~l~~~l 168 (201)
T cd03231 151 EPTTALDKAGVARFAEAM 168 (201)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 999999999999988753
No 102
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=1.1e-31 Score=208.66 Aligned_cols=140 Identities=20% Similarity=0.211 Sum_probs=102.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHH-HHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDL-RSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~-~~~~- 76 (163)
++++.|+. .++++++||+ +.+||+++|+| ||||||||| ++++.++.+| + ++...+..+. ++.+
T Consensus 5 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 5 NLNAGYGK---SQILFGVSLT-VPEGEIVALLG-RNGAGKTTL-LKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred eEEeecCC---eeEeeeeeEE-EcCCeEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 56788863 5799999999 99999999999 999999999 6778888776 1 2233333333 3345
Q ss_pred -cccCCCcccccC----------CCC--Cc------hhHHHhc-hhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 -LAQNQSAQAFLG----------PEN--PE------EPYLQGV-NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 -~~q~~~~~~~~~----------~~~--~~------~~~~~~~-~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|.+ .++.. ... .. ..+++.+ ++ ....++++.+||||||||++|||||+
T Consensus 79 ~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l----~~~~~~~~~~LS~G~~qrv~laral~---- 148 (222)
T cd03224 79 YVPEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL----KERRKQLAGTLSGGEQQMLAIARALM---- 148 (222)
T ss_pred Eecccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh----hhhhhCchhhCCHHHHHHHHHHHHHh----
Confidence 45554 22210 000 00 1233344 23 45678889999999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l 175 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAI 175 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 103
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=211.97 Aligned_cols=140 Identities=24% Similarity=0.333 Sum_probs=104.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|++ .++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| + ++...+..++++.+
T Consensus 8 ~l~~~~~~---~~~l~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 8 EVSYSSFG---KEILKDISVK-FEGGAIYTIVG-PSGAGKSTL-IKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeCC---eeeeeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 56788853 5799999999 99999999999 999999999 6778888766 2 22233334555555
Q ss_pred cccCCCccccc---------CC--CC----CchhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy17517 77 LAQNQSAQAFL---------GP--EN----PEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP 140 (163)
Q Consensus 77 ~~q~~~~~~~~---------~~--~~----~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ 140 (163)
++|++ .++. .. .. ...++++.+++ . +..++++.+||||||||++|||||+ .+|+
T Consensus 82 ~~q~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LS~G~~qrl~la~al~----~~p~ 151 (241)
T PRK14250 82 VFQQP--HLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGL----NKEYATRDVKNLSGGEAQRVSIARTLA----NNPE 151 (241)
T ss_pred EecCc--hhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCC----CHHHhhCCcccCCHHHHHHHHHHHHHh----cCCC
Confidence 45543 2221 10 00 11234555555 4 4567889999999999999999996 7899
Q ss_pred EEEeecccCCCCHHHHHHHHhhC
Q psy17517 141 FFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 141 lllLDEPts~LD~~~~~~i~~~l 163 (163)
++||||||++||+.++..+.+.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l 174 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELI 174 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHH
Confidence 99999999999999999887653
No 104
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=2.3e-31 Score=207.55 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=103.1
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH---HHHHH
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL---EDLRS 74 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~---~~~~~ 74 (163)
+++|.|+... +.++++|+||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+. ..+++
T Consensus 6 ~v~~~~~~~~~~~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (228)
T cd03257 6 NLSVSFPTGGGSVKALDDVSFS-IKKGETLGLVG-ESGSGKSTL-ARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK 82 (228)
T ss_pred eeeEeccCCCcceeeecCceeE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEEccccchhhHHHhhc
Confidence 6788886421 13799999999 99999999999 999999999 7778888776 1 2222221 34455
Q ss_pred hc--cccCCCccccc---------------CCCCCc---h----hHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHH
Q psy17517 75 MA--LAQNQSAQAFL---------------GPENPE---E----PYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 75 ~~--~~q~~~~~~~~---------------~~~~~~---~----~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAr 129 (163)
++ ++|++...++. ...... + ++++.+++ . ...++++.+||||||||++|||
T Consensus 83 ~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LS~G~~qrv~lar 158 (228)
T cd03257 83 EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGL----PEEVLNRYPHELSGGQRQRVAIAR 158 (228)
T ss_pred cEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCC----ChhHhhCCchhcCHHHHHHHHHHH
Confidence 55 55554211110 000000 0 22333443 3 3567889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.+.|
T Consensus 159 al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (228)
T cd03257 159 ALA----LNPKLLIADEPTSALDVSVQAQILDLL 188 (228)
T ss_pred HHh----cCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence 995 789999999999999999999887753
No 105
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=1.6e-31 Score=208.92 Aligned_cols=143 Identities=22% Similarity=0.213 Sum_probs=104.0
Q ss_pred cceeeCCCCCC-CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHH---HH-
Q psy17517 8 AQAFLGPENPE-EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLED---LR- 73 (163)
Q Consensus 8 ~~~f~y~~~~~-~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~---~~- 73 (163)
+.++.|++... .++++|+||+ |.+||+++|+| ||||||||| ++++.|+.+| + ++...+... .+
T Consensus 11 ~l~~~~~~~~~~~~~l~~~s~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (228)
T PRK10584 11 HLKKSVGQGEHELSILTGVELV-VKRGETIALIG-ESGSGKSTL-LAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRA 87 (228)
T ss_pred eeEEEccCCCcceEEEeccEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHh
Confidence 57888864322 3599999999 99999999999 999999999 6778888776 2 222233222 22
Q ss_pred Hhc--cccCCCcccccC------------CCC--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 74 SMA--LAQNQSAQAFLG------------PEN--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 74 ~~~--~~q~~~~~~~~~------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
+++ ++|++ .++.. ... ...++++.+++ .+..++++..||||||||++|||||
T Consensus 88 ~~i~~~~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 88 KHVGFVFQSF--MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGL----GKRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred heEEEEEccc--ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----HhHhhCChhhCCHHHHHHHHHHHHH
Confidence 334 45554 22210 000 01224555565 5667888999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.+.|
T Consensus 162 ~----~~p~llllDEPt~~LD~~~~~~l~~~l 189 (228)
T PRK10584 162 N----GRPDVLFADEPTGNLDRQTGDKIADLL 189 (228)
T ss_pred h----cCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 6 789999999999999999999887753
No 106
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=7e-32 Score=231.42 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=104.1
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc---------c--ccccCHHHHHHh--ccccCCCcc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA---------T--IRSLGLEDLRSM--ALAQNQSAQ 84 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~---------~--i~~~~~~~~~~~--~~~q~~~~~ 84 (163)
...+++||||+ +.+||+++||| +|||||||++ +++.++..|. + ++.....++|++ ++||+|...
T Consensus 303 ~~~Av~~VSf~-l~~GE~lglVG-eSGsGKSTla-r~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 303 EVKAVDDVSFD-LREGETLGLVG-ESGSGKSTLA-RILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred ceeeeeeeeeE-ecCCCEEEEEC-CCCCCHHHHH-HHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 35799999999 99999999999 9999999994 6677777771 1 111223344444 599999766
Q ss_pred cccC---------------CCC------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEE
Q psy17517 85 AFLG---------------PEN------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143 (163)
Q Consensus 85 ~~~~---------------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lll 143 (163)
+... ... +..+.++.+++ +....+++|.+|||||||||||||||+ .+|++++
T Consensus 380 LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL---~~~~l~ryP~elSGGQrQRvaIARALa----~~P~lli 452 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL---PPEFLDRYPHELSGGQRQRVAIARALA----LEPKLLI 452 (539)
T ss_pred cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCC---CHHHHhcCchhcCcchhHHHHHHHHHh----cCCCEEE
Confidence 5521 000 11234566666 244789999999999999999999997 6799999
Q ss_pred eecccCCCCHHHHHHHHhhC
Q psy17517 144 LDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 144 LDEPts~LD~~~~~~i~~~l 163 (163)
+|||||+||+..+..+.++|
T Consensus 453 ~DEp~SaLDvsvqa~VlnLl 472 (539)
T COG1123 453 LDEPVSALDVSVQAQVLNLL 472 (539)
T ss_pred ecCCccccCHHHHHHHHHHH
Confidence 99999999999999988764
No 107
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-31 Score=216.52 Aligned_cols=145 Identities=23% Similarity=0.258 Sum_probs=108.3
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~- 76 (163)
.+++|.|+.. .+++++|+||+ |.+||+++|+| ||||||||| ++++.|+.+| + ++...+..++++.+
T Consensus 9 ~~l~~~~~~~-~~~~l~~vsl~-i~~Ge~~~i~G-~nGaGKSTL-l~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 9 EHISFRYPDA-ATYALKDVSFS-VYEGEWVAIVG-HNGSGKSTL-AKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEeCCC-CccceeeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 3678889642 35699999999 99999999999 999999999 6778888877 1 23333344555555
Q ss_pred -cccCCCcccc---------cC--CCC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 -LAQNQSAQAF---------LG--PEN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 -~~q~~~~~~~---------~~--~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++...++ +. ... . ...+++.+++ .+..++++.+||||||||++|||||+
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~LS~G~~qrv~laral~---- 156 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGM----EDFLNREPHRLSGGQKQRVAIAGVLA---- 156 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCC----hhhhhCCcccCCHHHHHHHHHHHHHH----
Confidence 5665421221 00 000 0 1224555566 67788899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l 183 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETV 183 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 108
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=1.1e-31 Score=205.96 Aligned_cols=141 Identities=23% Similarity=0.289 Sum_probs=102.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~~~ 78 (163)
+.++.|++ .++++++||+ |.+||+++|+| ||||||||| ++++.++.+| + ++.... .++++.+.+
T Consensus 5 ~l~~~~~~---~~~l~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 5 NLACSRGE---RMLFEGLSFT-LNAGEALQVTG-PNGIGKTTL-LRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred EEEEEECC---EEEEeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 45677753 5799999999 99999999999 999999999 6778888766 1 222221 233445533
Q ss_pred cCCCccccc------------CCCC----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 79 QNQSAQAFL------------GPEN----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 79 q~~~~~~~~------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
..++..++. .... ...++++.+++ .+..++++.+||||||||++||||++ .+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~la~al~----~~p~ll 149 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGL----TGFEDLPAAQLSAGQQRRLALARLWL----SRAPLW 149 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCC----HHHhcCChhhcCHHHHHHHHHHHHHh----cCCCEE
Confidence 333222221 0000 11234555666 56678889999999999999999996 789999
Q ss_pred EeecccCCCCHHHHHHHHhhC
Q psy17517 143 VLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~l 163 (163)
+|||||++||+.++..+.+.|
T Consensus 150 llDEPt~~LD~~~~~~l~~~l 170 (198)
T TIGR01189 150 ILDEPTTALDKAGVALLAGLL 170 (198)
T ss_pred EEeCCCcCCCHHHHHHHHHHH
Confidence 999999999999999887753
No 109
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=9.4e-32 Score=201.06 Aligned_cols=135 Identities=27% Similarity=0.272 Sum_probs=104.5
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHH---HHHHh-ccccCCCcc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLE---DLRSM-ALAQNQSAQ 84 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~---~~~~~-~~~q~~~~~ 84 (163)
..++|++|+|. |++||.++||| ||||||||| +.++.++.+| .++.+++.+ .+|.+ +.|.++...
T Consensus 22 ~l~IL~~V~L~-v~~Ge~vaiVG-~SGSGKSTL-l~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 22 ELSILKGVELV-VKRGETVAIVG-PSGSGKSTL-LAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred ceeEeecceEE-ecCCceEEEEc-CCCCcHHhH-HHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 46799999999 99999999999 999999999 7889999988 233444433 44544 333333222
Q ss_pred ccc----------CCC--C--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 85 AFL----------GPE--N--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 85 ~~~----------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
+.. +.+ . ....+++.+|+ .+..+-+|.+||||||||||||||++ ..|++||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGL----g~Rl~HyP~qLSGGEQQRVAiARAfa----~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESSADSRAGAKALLEAVGL----GKRLTHYPAQLSGGEQQRVALARAFA----GRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCc----ccccccCccccCchHHHHHHHHHHhc----CCCCEEec
Confidence 321 111 1 11247788888 88899999999999999999999996 78999999
Q ss_pred ecccCCCCHHHHHHHHhhC
Q psy17517 145 DEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~l 163 (163)
||||.+||..+-.+|.+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLl 189 (228)
T COG4181 171 DEPTGNLDRATGDKIADLL 189 (228)
T ss_pred cCCCCCcchhHHHHHHHHH
Confidence 9999999999999888753
No 110
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.3e-31 Score=216.75 Aligned_cols=145 Identities=21% Similarity=0.261 Sum_probs=105.5
Q ss_pred cceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccccc----CHHHH
Q psy17517 8 AQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSL----GLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~----~~~~~ 72 (163)
+.++.|++.. .+++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| + ++... +..++
T Consensus 7 ~l~~~~~~~~~~~~~~l~~vsl~-i~~Ge~~~iiG-~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (287)
T PRK13641 7 NVDYIYSPGTPMEKKGLDNISFE-LEEGSFVALVG-HTGSGKSTL-MQHFNALLKPSSGTITIAGYHITPETGNKNLKKL 83 (287)
T ss_pred EEEEEcCCCCCccccceeeeEEE-EeCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 5778886321 25799999999 99999999999 999999999 7778888877 1 22211 12334
Q ss_pred HHhc--cccCCCccccc---------CC--CC--------CchhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHH
Q psy17517 73 RSMA--LAQNQSAQAFL---------GP--EN--------PEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 73 ~~~~--~~q~~~~~~~~---------~~--~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAra 130 (163)
+..+ ++|++...++. .. .. ...++++.+++ . ...++++.+||||||||++||||
T Consensus 84 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 84 RKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGL----SEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----ChhHhhCCcccCCHHHHHHHHHHHH
Confidence 4445 56665322321 00 00 01224555555 4 46788999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ .+|+++||||||++||+.++..+.++|
T Consensus 160 l~----~~p~lLlLDEPt~gLD~~~~~~l~~~l 188 (287)
T PRK13641 160 MA----YEPEILCLDEPAAGLDPEGRKEMMQLF 188 (287)
T ss_pred HH----cCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 96 789999999999999999999887753
No 111
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.4e-32 Score=212.75 Aligned_cols=140 Identities=22% Similarity=0.189 Sum_probs=102.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHH---HHHHhc--cc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLE---DLRSMA--LA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~---~~~~~~--~~ 78 (163)
+++|.|++ .++++||||+ |++||+++|+| ||||||||| ++++.++..| +. +.+.+.. ..++++ ++
T Consensus 7 ~l~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 7 NVSKRFGD---FVALDDVSLD-IPSGELVALLG-PSGSGKTTL-LRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred eEEEEECC---EEeeeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 67888863 5799999999 99999999999 999999999 6778888766 21 1111110 112334 55
Q ss_pred cCCCccccc----------C--CCC-----C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 79 QNQSAQAFL----------G--PEN-----P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 79 q~~~~~~~~----------~--~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
|++ .++. . ... . .+++++.+++ .+..++++.+||||||||++|||||+
T Consensus 81 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~la~al~-- 152 (239)
T cd03296 81 QHY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL----DWLADRYPAQLSGGQRQRVALARALA-- 152 (239)
T ss_pred cCC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCC----hhhhhcChhhCCHHHHHHHHHHHHHh--
Confidence 544 2221 0 000 0 0124555555 56678889999999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 153 --~~p~llllDEP~~~LD~~~~~~l~~~l 179 (239)
T cd03296 153 --VEPKVLLLDEPFGALDAKVRKELRRWL 179 (239)
T ss_pred --cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 112
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-31 Score=213.16 Aligned_cols=143 Identities=27% Similarity=0.314 Sum_probs=104.7
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccc--ccCHHHHHHh
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIR--SLGLEDLRSM 75 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~--~~~~~~~~~~ 75 (163)
.+++|.|++ +++++++||+ |.+||+++|+| ||||||||| ++++.|+.+| + ++. ..+...+++.
T Consensus 5 ~~l~~~~~~---~~il~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 5 SDLWFRYQD---EPVLKGLNLD-FSLSPVTGLVG-ANGCGKSTL-FMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred EEEEEEcCC---cccccceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 367888963 5799999999 99999999999 999999999 6778888776 2 121 1122344555
Q ss_pred c--cccCCCccccc---------C--C-CCCc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 76 A--LAQNQSAQAFL---------G--P-ENPE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 76 ~--~~q~~~~~~~~---------~--~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
+ ++|++....+. . . .... .++++.+++ .+..++++.+||||||||++|||||+
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrl~laraL~-- 152 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDA----QHFRHQPIQCLSHGQKKRVAIAGALV-- 152 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----HhHhcCCchhCCHHHHHHHHHHHHHH--
Confidence 5 56654211110 0 0 0000 124445555 56678889999999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 153 --~~p~lllLDEPt~~LD~~~~~~l~~~l 179 (271)
T PRK13638 153 --LQARYLLLDEPTAGLDPAGRTQMIAII 179 (271)
T ss_pred --cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 113
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3.3e-32 Score=205.17 Aligned_cols=139 Identities=24% Similarity=0.280 Sum_probs=106.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------------------ccccccC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------------------ATIRSLG 68 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------------------~~i~~~~ 68 (163)
+.+.+|.. ..+|++||++ ...|+.+.||| -|||||||| ++++..+..| ..+...+
T Consensus 11 dlHK~~G~---~eVLKGvSL~-A~~GdVisIIG-sSGSGKSTf-LRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 11 DLHKRYGE---HEVLKGVSLQ-ANAGDVISIIG-SSGSGKSTF-LRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred HHHhhccc---chhhcceeee-cCCCCEEEEec-CCCCchhHH-HHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 45567754 5799999999 99999999999 999999999 6677777766 0111122
Q ss_pred ---HHHHHHhc--cccCCCccccc----------------CCC-----CCchhHHHhchhcccCCCccCCCCCCCCHHHH
Q psy17517 69 ---LEDLRSMA--LAQNQSAQAFL----------------GPE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEK 122 (163)
Q Consensus 69 ---~~~~~~~~--~~q~~~~~~~~----------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqk 122 (163)
...+|.+. |||+. +++. +.. .+.+.++..+|+ .++.+.||..|||||+
T Consensus 85 ~~q~~r~Rs~L~mVFQ~F--NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi----~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHF--NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI----AEKADAYPAHLSGGQQ 158 (256)
T ss_pred HHHHHHHHHHhhHhhhhc--chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCc----hhhhhcCccccCchHH
Confidence 33456665 67765 2321 111 112347778888 8999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 123 TVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 123 QrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
||++|||||| .+|+++++|||||+|||+...++++.
T Consensus 159 QR~aIARaLa----meP~vmLFDEPTSALDPElVgEVLkv 194 (256)
T COG4598 159 QRVAIARALA----MEPEVMLFDEPTSALDPELVGEVLKV 194 (256)
T ss_pred HHHHHHHHHh----cCCceEeecCCcccCCHHHHHHHHHH
Confidence 9999999998 56999999999999999998888764
No 114
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.3e-31 Score=215.93 Aligned_cols=145 Identities=28% Similarity=0.291 Sum_probs=107.7
Q ss_pred cceeeCCCCC---CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccC-HHHHHH
Q psy17517 8 AQAFLGPENP---EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLG-LEDLRS 74 (163)
Q Consensus 8 ~~~f~y~~~~---~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~-~~~~~~ 74 (163)
+.+|.|+... .+++|+|+||+ |.+||+++|+| +|||||||| ++++.|+..| + ++.... ..++++
T Consensus 9 ~l~~~~~~~~~~~~~~vl~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 85 (280)
T PRK13633 9 NVSYKYESNEESTEKLALDDVNLE-VKKGEFLVILG-RNGSGKSTI-AKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85 (280)
T ss_pred eeEEEcCCCCCCCCcceeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEeccccccHHHHhh
Confidence 6788997431 35799999999 99999999999 999999999 6778888876 2 222211 234455
Q ss_pred hc--cccCCCccccc---------CCCC---C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 75 MA--LAQNQSAQAFL---------GPEN---P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 75 ~~--~~q~~~~~~~~---------~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
++ ++|++...++. .... . .+.+++.+++ .+..++++.+||||||||++|||+|+
T Consensus 86 ~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~LS~G~~qrv~laral~- 160 (280)
T PRK13633 86 KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGM----YEYRRHAPHLLSGGQKQRVAIAGILA- 160 (280)
T ss_pred heEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCC----HhHhhCCcccCCHHHHHHHHHHHHHH-
Confidence 55 66665322321 1100 0 1224555566 67788899999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 161 ---~~p~llllDEPt~gLD~~~~~~l~~~l 187 (280)
T PRK13633 161 ---MRPECIIFDEPTAMLDPSGRREVVNTI 187 (280)
T ss_pred ---cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999987753
No 115
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=1.7e-31 Score=209.94 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=103.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|++ .++++++||+ |.+||+++|+| ||||||||| ++++.|+.+| + ++...+.. .++.+
T Consensus 6 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 6 GLSFAYGA---RRALDDVSFT-VRPGEFVALLG-PNGAGKSTL-FSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred eeEEEECC---EEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 56788863 5799999999 99999999999 999999999 6778888776 2 22222222 22344
Q ss_pred cccCCCcccccC------------CCC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLG------------PEN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~------------~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .++.. ... . ..++++.+++ ....++++.+||||||||++|||||+
T Consensus 79 ~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G~~qrl~laral~---- 148 (236)
T TIGR03864 79 VFQQP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL----AERADDKVRELNGGHRRRVEIARALL---- 148 (236)
T ss_pred eCCCC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----hhhhcCChhhCCHHHHHHHHHHHHHh----
Confidence 55554 22210 000 0 1224555565 56678899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l 175 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHV 175 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 116
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-31 Score=215.89 Aligned_cols=146 Identities=23% Similarity=0.277 Sum_probs=108.1
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~- 76 (163)
.+++|.|+.....++++|+||+ |.+||+++|+| +|||||||| ++++.++.+| + ++...+..++++.+
T Consensus 8 ~~l~~~~~~~~~~~~l~~v~l~-i~~Ge~~~I~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (277)
T PRK13642 8 ENLVFKYEKESDVNQLNGVSFS-ITKGEWVSIIG-QNGSGKSTT-ARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG 84 (277)
T ss_pred EEEEEEcCCCCcCeeeeeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceE
Confidence 3678899743335699999999 99999999999 999999999 6778888877 1 23333344556555
Q ss_pred -cccCCCccccc---------CC---CCCc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 -LAQNQSAQAFL---------GP---ENPE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 -~~q~~~~~~~~---------~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++...++. .. .... +.+++.+++ .+..++++.+||||||||++|||||+
T Consensus 85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~lAraL~---- 156 (277)
T PRK13642 85 MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNM----LDFKTREPARLSGGQKQRVAVAGIIA---- 156 (277)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC----HhHhhCCcccCCHHHHHHHHHHHHHH----
Confidence 56654222220 00 0001 123445555 56778899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l 183 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVI 183 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 117
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.97 E-value=5.9e-31 Score=206.77 Aligned_cols=146 Identities=17% Similarity=0.132 Sum_probs=102.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|+.. +.++++|+||+ +.+||+++|+| ||||||||| ++++.|+.+| + ++...+..++++.+
T Consensus 5 ~l~~~~~~~-~~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 5 HVRFRYKPD-GPVILDNISLR-IKPGEVVGIVG-RSGSGKSTL-TKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred EEEEecCCC-CccceeceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 567888642 35799999999 99999999999 999999999 6778888766 2 22223334455555
Q ss_pred cccCCCccccc---------CCCCC-chh---HHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL---------GPENP-EEP---YLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~---------~~~~~-~~~---~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .++. ..... ... .++..++.. ......++++.+||||||||++|||||+
T Consensus 81 ~~q~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~---- 154 (237)
T cd03252 81 VLQEN--VLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI---- 154 (237)
T ss_pred EcCCc--hhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh----
Confidence 45543 2221 11111 111 111111100 1133456789999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l 181 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNM 181 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999888753
No 118
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-31 Score=215.32 Aligned_cols=143 Identities=23% Similarity=0.333 Sum_probs=106.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccC-HHHHHHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLG-LEDLRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~-~~~~~~~~- 76 (163)
+.+|.|++ +.++|+||||+ |++||+++|+| ||||||||| ++++.++..| + ++...+ ...+++.+
T Consensus 6 ~l~~~~~~--~~~~l~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 6 NVSYSYPD--GTPALENINLV-IKKGEYIGIIG-KNGSGKSTL-ALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEcCC--CCceeeeeEEE-EeCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 67888863 35699999999 99999999999 999999999 6778888776 1 222222 23445555
Q ss_pred -cccCCCcccc---------cCCCC----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 -LAQNQSAQAF---------LGPEN----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 -~~q~~~~~~~---------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++...++ +.... ...++++.+++ .+..++++..|||||+||++|||||+
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G~~qrv~laral~---- 152 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGL----EKYRHRSPKTLSGGQGQCVALAGILT---- 152 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC----HHHhcCCcccCCHHHHHHHHHHHHHH----
Confidence 5666532222 01000 01124555565 66778899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+++.|
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l 179 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERI 179 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 119
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=4e-31 Score=235.68 Aligned_cols=148 Identities=20% Similarity=0.159 Sum_probs=112.7
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|+|+++ +.++|+|+||+ |++||.++|+| +|||||||| .+++.++++| .++++.+..++|+++.
T Consensus 459 ~~vsf~y~~~-~~~il~~i~l~-i~~G~~vaivG-~sGsGKSTL-~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 459 ENIRFRYAPD-SPEVLSNLNLD-IKPGEFIGIVG-PSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred EEEEEEcCCC-CccccccceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 3789999754 45799999999 99999999999 999999999 7888999887 3566778888898884
Q ss_pred ccCCCcccc----------cCCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF----------LGPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~----------~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+..++..+| ..++...++ +++.+++. .+.+....+.+.+||||||||++|||||+ +
T Consensus 535 ~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall----~ 610 (694)
T TIGR01846 535 VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV----G 610 (694)
T ss_pred EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH----h
Confidence 444443444 122223333 23333321 11234455678899999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|+++|||||||+||+.++.++.+.
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~ 635 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRN 635 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHH
Confidence 8999999999999999999998765
No 120
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-31 Score=214.61 Aligned_cols=143 Identities=22% Similarity=0.302 Sum_probs=106.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
++++.|++ ...+++|+||+ |.+||+++|+| +|||||||| ++++.|+..| + ++...+...+++++
T Consensus 8 ~l~~~~~~--~~~~l~~vsl~-i~~Ge~~~i~G-~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 8 DLCYSYSG--SKEALNNINFI-APRNSRIAVIG-PNGAGKSTL-FRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEeCC--CCceeeEeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 67888964 24699999999 99999999999 999999999 6778888776 2 22223344555555
Q ss_pred cccCCCccccc---------CC---CCC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 LAQNQSAQAFL---------GP---ENP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 ~~q~~~~~~~~---------~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|++...++. .. ... ..++++.+++ .+..++.+.+||||||||++|||||+ .
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~Gq~qrl~laraL~----~ 154 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL----EELRDRVPHHLSGGEKKRVAIAGVIA----M 154 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC----hhHhcCCcccCCHHHHHHHHHHHHHH----c
Confidence 56654322220 00 000 1234555565 66778899999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.+.|
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l 180 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFL 180 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999887753
No 121
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-31 Score=215.64 Aligned_cols=143 Identities=22% Similarity=0.258 Sum_probs=107.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccc--ccCHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIR--SLGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~--~~~~~~~~~~~ 76 (163)
+++|.|++ ++.+++++||+ |.+||+++|+| +|||||||| ++++.++.+| + ++. .....++++.+
T Consensus 10 ~l~~~~~~--~~~~l~~vs~~-i~~Ge~~~i~G-~nGaGKSTL-l~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 10 ELNYNYSD--GTHALKGININ-IKKGEVTAILG-GNGAGKSTL-FQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeCC--CCeeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 67888963 35799999999 99999999999 999999999 6778888776 1 121 12233455555
Q ss_pred --cccCCCccccc--------------CCC-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 --LAQNQSAQAFL--------------GPE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 --~~q~~~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
++|++...++. ... ...+.+++.+++ .+..++++.+||||||||++|||||+
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~LS~G~~qrl~laraL~--- 157 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI----EHLKDKPTHCLSFGQKKRVAIAGVLV--- 157 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC----hhhhhCCcccCCHHHHHHHHHHHHHH---
Confidence 56665322221 000 001234566666 67788999999999999999999996
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 158 -~~p~lLilDEPt~gLD~~~~~~l~~~l 184 (283)
T PRK13636 158 -MEPKVLVLDEPTAGLDPMGVSEIMKLL 184 (283)
T ss_pred -cCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 122
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.8e-31 Score=206.21 Aligned_cols=140 Identities=16% Similarity=0.232 Sum_probs=102.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHH-HHHHhc--cccC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLE-DLRSMA--LAQN 80 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~-~~~~~~--~~q~ 80 (163)
+.++.|++ +++++++||+ +.+||+++|+| ||||||||| ++++.|+.+| +. +.+.+.. ..++++ ++|+
T Consensus 5 ~l~~~~~~---~~~l~~v~~~-i~~G~~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 5 NVTKRFGR---VTALDDISFS-VEKGEIFGLLG-PNGAGKTTT-IRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred EEEEEECC---EEEEeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCCchhHHHHccEEEeccC
Confidence 56777853 5799999999 99999999999 999999999 6778888776 22 2333322 234444 4554
Q ss_pred CCcccccC---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy17517 81 QSAQAFLG---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP 140 (163)
Q Consensus 81 ~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ 140 (163)
+ .++.. ... ...++++.+++ .+..++++.+||||||||++|||+|+ .+|+
T Consensus 79 ~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~la~al~----~~p~ 148 (210)
T cd03269 79 R--GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL----SEYANKRVEELSKGNQQKVQFIAAVI----HDPE 148 (210)
T ss_pred C--cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC----hHHHhCcHhhCCHHHHHHHHHHHHHh----cCCC
Confidence 3 22210 000 01224455555 56677889999999999999999996 7899
Q ss_pred EEEeecccCCCCHHHHHHHHhhC
Q psy17517 141 FFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 141 lllLDEPts~LD~~~~~~i~~~l 163 (163)
++||||||++||+.++..+.+.|
T Consensus 149 ~lllDEP~~~LD~~~~~~~~~~l 171 (210)
T cd03269 149 LLILDEPFSGLDPVNVELLKDVI 171 (210)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHH
Confidence 99999999999999999887753
No 123
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=3.2e-31 Score=209.76 Aligned_cols=139 Identities=26% Similarity=0.308 Sum_probs=102.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc-------cccc--------CHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT-------IRSL--------GLE 70 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~-------i~~~--------~~~ 70 (163)
++++.|++ +++++|+||+ |++||+++|+| ||||||||| ++++.|+.+| +. +... +..
T Consensus 8 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 8 NLVKKFHG---QTVLHGIDLE-VKPGEVVAIIG-PSGSGKTTL-LRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred ceEEEECC---eeeeccceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 67788863 5799999999 99999999999 999999999 6777888766 21 2211 112
Q ss_pred HHHHhc--cccCCCcccccC-------------CCC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHH
Q psy17517 71 DLRSMA--LAQNQSAQAFLG-------------PEN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAAL 127 (163)
Q Consensus 71 ~~~~~~--~~q~~~~~~~~~-------------~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvai 127 (163)
.+++.+ ++|++ .++.. ... . ..++++.+++ ....++++.+||||||||++|
T Consensus 82 ~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 82 QLRQHVGFVFQNF--NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL----AGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred HhhhhEEEEecCc--ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----cchhhCChhhCChHHHHHHHH
Confidence 345555 45543 22210 000 0 1124555555 556788999999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
||||+ .+|+++||||||++||+.++..+.++
T Consensus 156 a~al~----~~p~lllLDEPt~~LD~~~~~~l~~~ 186 (250)
T PRK11264 156 ARALA----MRPEVILFDEPTSALDPELVGEVLNT 186 (250)
T ss_pred HHHHh----cCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 99996 78999999999999999999988765
No 124
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.97 E-value=2.7e-31 Score=206.48 Aligned_cols=142 Identities=24% Similarity=0.333 Sum_probs=99.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc-------ccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT-------IRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~-------i~~~~~~~~~~~~-- 76 (163)
+.++.|+.. .+++++|+||+ |++||+++|+| ||||||||| ++++.++.+| +. +...+...+++.+
T Consensus 7 ~l~~~~~~~-~~~~l~~i~~~-i~~G~~~~i~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 7 NVSFSYPNQ-EIPALDNVSLT-IRAGEKVAIIG-RVGSGKSTL-LKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEcCCC-CcccccceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 567788642 35799999999 99999999999 999999999 6778888766 21 2222333444555
Q ss_pred cccCCCccccc---------CCC-CCc---hhHHHhchhcccCCCccC-----------CCCCCCCHHHHHHHHHHHHHH
Q psy17517 77 LAQNQSAQAFL---------GPE-NPE---EPYLQGVNYNCVAPGKRF-----------QPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 77 ~~q~~~~~~~~---------~~~-~~~---~~~~~~~~~~~~~~~~~~-----------~~~~~LSgGqkQrvaiAraL~ 132 (163)
++|++ .++. ... ... .++++.+++ .+..+ ..+.+||||||||++|||||+
T Consensus 83 ~~q~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~ 156 (220)
T cd03245 83 VPQDV--TLFYGTLRDNITLGAPLADDERILRAAELAGV----TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALL 156 (220)
T ss_pred eCCCC--ccccchHHHHhhcCCCCCCHHHHHHHHHHcCc----HHHHHhccccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 55554 2221 111 111 123344444 22222 245799999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 157 ----~~p~llllDEPt~~LD~~~~~~l~~~l 183 (220)
T cd03245 157 ----NDPPILLLDEPTSAMDMNSEERLKERL 183 (220)
T ss_pred ----cCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 789999999999999999999888753
No 125
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=4.9e-31 Score=230.63 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=109.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|+|+.+ +.++|+|+||+ +++||.++|+| ||||||||| ++++.++++| .++.+.+..++|+++.+
T Consensus 318 ~v~~~y~~~-~~~~l~~i~~~-i~~G~~~~ivG-~sGsGKSTL-l~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 393 (569)
T PRK10789 318 IRQFTYPQT-DHPALENVNFT-LKPGQMLGICG-PTGSGKSTL-LSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAV 393 (569)
T ss_pred EEEEECCCC-CCccccCeeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEE
Confidence 678999853 46799999999 99999999999 999999999 6788898887 24455666778888744
Q ss_pred cCCCcccc----------cCCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAF----------LGPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~----------~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..++..+| ..++...++ +++.+++. .+.....++.+..||||||||++|||||+ ++
T Consensus 394 v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall----~~ 469 (569)
T PRK10789 394 VSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL----LN 469 (569)
T ss_pred EccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh----cC
Confidence 44433343 112222222 23333321 11133445678899999999999999995 88
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+++|||||||+||+.++.++.+.
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~ 493 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHN 493 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHH
Confidence 999999999999999999988764
No 126
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=3.3e-31 Score=218.45 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=100.0
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHH---HHHHhc--cccCCCcc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLE---DLRSMA--LAQNQSAQ 84 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~---~~~~~~--~~q~~~~~ 84 (163)
.++++||||+ |.+||+++|+| +|||||||| ++++.++..+ .++...+.. .+++++ ++|++...
T Consensus 34 ~~~l~~vsl~-i~~Ge~~~lvG-~sGsGKSTL-lk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLR-LYEGETLGVVG-ESGCGKSTF-ARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 5799999999 99999999999 999999999 5667787766 233333333 244455 77776332
Q ss_pred cccCC---------------CCCc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 85 AFLGP---------------ENPE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 85 ~~~~~---------------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
++... .... .++++.+++ .....++++.+|||||+|||+|||||+ .+|+++
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl---~~~~~~~~p~~LSgG~~QRv~iArAL~----~~P~ll 183 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGL---LPNLINRYPHEFSGGQCQRIGIARALI----LEPKLI 183 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC---ChHHhcCCcccCCHHHHHHHHHHHHHh----cCCCEE
Confidence 32100 0011 124455555 124578899999999999999999996 789999
Q ss_pred EeecccCCCCHHHHHHHHhhC
Q psy17517 143 VLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~l 163 (163)
|+||||++||+.++.++.++|
T Consensus 184 ilDEPts~LD~~~~~~i~~lL 204 (331)
T PRK15079 184 ICDEPVSALDVSIQAQVVNLL 204 (331)
T ss_pred EEeCCCccCCHHHHHHHHHHH
Confidence 999999999999999988753
No 127
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=2.9e-31 Score=207.65 Aligned_cols=141 Identities=18% Similarity=0.198 Sum_probs=102.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHH-HHHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLED-LRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~-~~~~~- 76 (163)
+++|.|++ .++++|+||+ |.+||+++|+| +|||||||| ++++.++.+| + ++...+..+ .++.+
T Consensus 5 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 5 NLNVYYGQ---SHILRGVSLE-VPKGEVTCVLG-RNGVGKTTL-LKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred eEEEEeCC---eEEecceeeE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 57888863 4799999999 99999999999 999999999 6778888776 2 222333333 23445
Q ss_pred -cccCCCcccccC------------CC-CCc----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 77 -LAQNQSAQAFLG------------PE-NPE----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 77 -~~q~~~~~~~~~------------~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
++|++ .+|.. .. ... .++++.++. .....++++.+||||||||++|||||+ ++
T Consensus 79 ~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l~~~~~~~~~~LS~G~~qrv~la~al~----~~ 149 (230)
T TIGR03410 79 YVPQGR--EIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---LKEMLGRRGGDLSGGQQQQLAIARALV----TR 149 (230)
T ss_pred EeccCC--cccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---HHHHhhCChhhCCHHHHHHHHHHHHHh----cC
Confidence 44443 23311 00 011 123333331 145668889999999999999999996 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|++++|||||++||+.++..+.++|
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l 174 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVI 174 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999988753
No 128
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.97 E-value=9.7e-31 Score=205.66 Aligned_cols=149 Identities=27% Similarity=0.306 Sum_probs=102.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~~~ 78 (163)
+.++.|+...+.++++|+||+ +++||+++|+| +|||||||| ++++.|+.+| + ++...+...+++++.+
T Consensus 5 ~l~~~~~~~~~~~~l~~i~~~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 5 NVSFRYPSRPDVPILKGLSLT-IPPGKTVALVG-SSGCGKSTV-VSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred EEEEecCCCCCccceeceEEE-ecCCCEEEEEe-CCCCCHHHH-HHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEE
Confidence 567888754346799999999 99999999999 999999999 6778888766 2 1222233344555533
Q ss_pred cCCCccccc---------CCCCC-chh---HHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAFL---------GPENP-EEP---YLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~~---------~~~~~-~~~---~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..++..++. ..... .+. .++..++.. ......+.++.+|||||+||++|||||+ .+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~----~~ 157 (238)
T cd03249 82 VSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL----RN 157 (238)
T ss_pred ECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHh----cC
Confidence 333222221 11111 111 111112100 1133456778999999999999999996 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+++||||||++||+.++.++.+.|
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l 182 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEAL 182 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHH
Confidence 9999999999999999999988753
No 129
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=5.5e-31 Score=210.66 Aligned_cols=145 Identities=18% Similarity=0.186 Sum_probs=104.4
Q ss_pred cceeeCCCC------CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHH--
Q psy17517 8 AQAFLGPEN------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLE-- 70 (163)
Q Consensus 8 ~~~f~y~~~------~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~-- 70 (163)
+++|.|+.. +++++++|+||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+..
T Consensus 7 ~l~~~~~~~~~~~~~~~~~il~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (265)
T TIGR02769 7 DVTHTYRTGGLFGAKQRAPVLTNVSLS-IEEGETVGLLG-RSGCGKSTL-ARLLLGLEKPAQGTVSFRGQDLYQLDRKQR 83 (265)
T ss_pred eEEEEeccCccccccCceEEeeCceeE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEEccccCHHHH
Confidence 678888632 135799999999 99999999999 999999999 6778888876 1 22222222
Q ss_pred -HHHHhc--cccCCCccccc----------------CCCC-----CchhHHHhchhcccCC-CccCCCCCCCCHHHHHHH
Q psy17517 71 -DLRSMA--LAQNQSAQAFL----------------GPEN-----PEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVA 125 (163)
Q Consensus 71 -~~~~~~--~~q~~~~~~~~----------------~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrv 125 (163)
.+++.+ ++|.+...++. .... ...++++.+++ . ...++++.+||||||||+
T Consensus 84 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~~LSgGe~qrv 159 (265)
T TIGR02769 84 RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGL----RSEDADKLPRQLSGGQLQRI 159 (265)
T ss_pred HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----ChhhhhCChhhCCHHHHHHH
Confidence 234455 55554211110 0000 01124555555 3 456788999999999999
Q ss_pred HHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 126 ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 126 aiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|||||+ ++|+++||||||++||+.++..+.+.|
T Consensus 160 ~laral~----~~p~illLDEPt~~LD~~~~~~l~~~l 193 (265)
T TIGR02769 160 NIARALA----VKPKLIVLDEAVSNLDMVLQAVILELL 193 (265)
T ss_pred HHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 9999996 789999999999999999998887653
No 130
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=2.8e-31 Score=209.23 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=103.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHH-Hhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLR-SMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~-~~~- 76 (163)
+.++.|++ .++++|+||+ |.+||+++|+| ||||||||| ++++.|+.+| + ++...+..+.+ +.+
T Consensus 7 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 7 GLSVSFDG---FKALNDLSLY-VDPGELRVIIG-PNGAGKTTM-MDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eeEEEcCC---eEEeeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 56788863 5799999999 99999999999 999999999 6778888766 1 22223333322 234
Q ss_pred -cccCCCccccc----------C-C-C------------C----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHH
Q psy17517 77 -LAQNQSAQAFL----------G-P-E------------N----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAAL 127 (163)
Q Consensus 77 -~~q~~~~~~~~----------~-~-~------------~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvai 127 (163)
++|.+ .++. . . . . ...++++.+++ .+..++++.+|||||+||++|
T Consensus 81 ~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~Ge~qrv~l 154 (242)
T TIGR03411 81 RKFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL----ADEADRLAGLLSHGQKQWLEI 154 (242)
T ss_pred Eecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHH
Confidence 44443 2221 0 0 0 0 01224555565 567788999999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||+ ++|++++|||||++||+.++..+.+.|
T Consensus 155 aral~----~~p~~lllDEPt~~LD~~~~~~l~~~l 186 (242)
T TIGR03411 155 GMLLM----QDPKLLLLDEPVAGMTDEETEKTAELL 186 (242)
T ss_pred HHHHh----cCCCEEEecCCccCCCHHHHHHHHHHH
Confidence 99996 789999999999999999999988753
No 131
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.97 E-value=3e-31 Score=212.63 Aligned_cols=140 Identities=24% Similarity=0.204 Sum_probs=103.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHH---HHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLE---DLRSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~---~~~~~ 75 (163)
+++|.|++ .++++||||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+.. .++++
T Consensus 12 ~l~~~~~~---~~il~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 12 GVSFTRGN---RCIFDNISLT-VPRGKITAIMG-PSGIGKTTL-LRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred CeEEEECC---EEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 56788853 5799999999 99999999999 999999999 6778888776 2 22222222 23444
Q ss_pred c--cccCCCcccccC------------C-C--CC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 76 A--LAQNQSAQAFLG------------P-E--NP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 76 ~--~~q~~~~~~~~~------------~-~--~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
+ ++|++ .++.. . . .. ..++++.+++ .+..++++.+||||||||++|||||+
T Consensus 86 i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 86 MSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL----RGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred EEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCC----hhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 5 45543 22210 0 0 00 0124455565 66778899999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 160 ----~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (269)
T PRK11831 160 ----LEPDLIMFDEPFVGQDPITMGVLVKLI 186 (269)
T ss_pred ----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 132
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.1e-31 Score=212.11 Aligned_cols=144 Identities=22% Similarity=0.320 Sum_probs=106.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|+++ +.++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| + ++...+..++++++
T Consensus 12 nl~~~~~~~-~~~il~~isl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~ 87 (271)
T PRK13632 12 NVSFSYPNS-ENNALKNVSFE-INEGEYVAILG-HNGSGKSTI-SKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGI 87 (271)
T ss_pred eEEEEcCCC-CccceeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEE
Confidence 677888632 35799999999 99999999999 999999999 6778888776 2 23333344556655
Q ss_pred cccCCCcccc---------cCC--C-CC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 LAQNQSAQAF---------LGP--E-NP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 ~~q~~~~~~~---------~~~--~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|++...++ +.. . .. ..++++.+++ .+..++++.+|||||+||++|||||+ .
T Consensus 88 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~laral~----~ 159 (271)
T PRK13632 88 IFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM----EDYLDKEPQNLSGGQKQRVAIASVLA----L 159 (271)
T ss_pred EEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----HHHhhCCcccCCHHHHHHHHHHHHHH----c
Confidence 5555421111 000 0 00 1224455565 66778899999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.++|
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l 185 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIM 185 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999887753
No 133
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.9e-31 Score=205.69 Aligned_cols=142 Identities=21% Similarity=0.250 Sum_probs=103.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccC----HHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLG----LEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~----~~~~~~~~~~q 79 (163)
+.++.|+. .++++|+||+ |++||+++|+| ||||||||| ++++.++.+| +. +.+.+ ...+++++.+.
T Consensus 6 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 6 NLACERDE---RILFSGLSFT-LNAGELVQIEG-PNGAGKTSL-LRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred EEEEEECC---EEEEecceEE-ECCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 56777753 4699999999 99999999999 999999999 6778888776 21 11111 12344455333
Q ss_pred CCCccccc------------CC-C-C---CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 80 NQSAQAFL------------GP-E-N---PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 80 ~~~~~~~~------------~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
.++..++. .. . . ..+++++.+++ .+..++++.+||||||||++|||||+ ++|+++
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G~~qrl~la~al~----~~p~ll 151 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGL----AGFEDVPVRQLSAGQQRRVALARLWL----TRAPLW 151 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCC----HHHhhCChhhcCHHHHHHHHHHHHHh----cCCCEE
Confidence 33222221 00 0 0 11235666666 56678889999999999999999995 789999
Q ss_pred EeecccCCCCHHHHHHHHhhC
Q psy17517 143 VLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~l 163 (163)
+|||||++||+.++..+.++|
T Consensus 152 llDEPt~~LD~~~~~~l~~~l 172 (204)
T PRK13538 152 ILDEPFTAIDKQGVARLEALL 172 (204)
T ss_pred EEeCCCccCCHHHHHHHHHHH
Confidence 999999999999999987753
No 134
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.7e-32 Score=207.68 Aligned_cols=145 Identities=23% Similarity=0.251 Sum_probs=111.2
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--c--ccccCH--HHHHHhccccC
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--T--IRSLGL--EDLRSMALAQN 80 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~--i~~~~~--~~~~~~~~~q~ 80 (163)
+..+-+|++.+ +.+++|||++ |.+||+++++| ||||||||| ++++.|+..|. . +.+.+. .--.+.+|||+
T Consensus 7 ~~~sl~y~g~~-~~~le~vsL~-ia~ge~vv~lG-pSGcGKTTL-Lnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 7 SHLSLSYEGKP-RSALEDVSLT-IASGELVVVLG-PSGCGKTTL-LNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred hheEEecCCcc-hhhhhcccee-ecCCCEEEEEc-CCCccHHHH-HHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 35667887643 5699999999 99999999999 999999999 88999999882 1 222111 11245679999
Q ss_pred C---------Cccccc----CCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 81 Q---------SAQAFL----GPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 81 ~---------~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
+ +|..|. +... .....+..+++ .+..++++-+||||||||+.|||||+ .+|+++
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL----~~~~~~~i~qLSGGmrQRvGiARALa----~eP~~L 154 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGL----EGAEHKYIWQLSGGMRQRVGIARALA----VEPQLL 154 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCc----ccccccceEeecchHHHHHHHHHHhh----cCcceE
Confidence 7 333331 1111 11235666677 77789999999999999999999997 679999
Q ss_pred EeecccCCCCHHHHHHHHhhC
Q psy17517 143 VLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~l 163 (163)
+||||+++||.-++++++++|
T Consensus 155 lLDEPfgAlDa~tRe~mQelL 175 (259)
T COG4525 155 LLDEPFGALDALTREQMQELL 175 (259)
T ss_pred eecCchhhHHHHHHHHHHHHH
Confidence 999999999999999988753
No 135
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3e-31 Score=210.47 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=103.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHH-Hhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLR-SMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~-~~~- 76 (163)
+.+|.|++ .++++++||+ +.+||+++|+| ||||||||| ++++.|+.+| + ++...+....+ ..+
T Consensus 10 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 10 GLMMRFGG---LLAVNNVNLE-VREQEIVSLIG-PNGAGKTTV-FNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEEECC---EEEEEeeeeE-EcCCeEEEEEC-CCCCCHHHH-HHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 56788853 5799999999 99999999999 999999999 6788888776 1 23333333333 234
Q ss_pred -cccCCCcccccC----------C------------------CCC-------chhHHHhchhcccCCCccCCCCCCCCHH
Q psy17517 77 -LAQNQSAQAFLG----------P------------------ENP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGG 120 (163)
Q Consensus 77 -~~q~~~~~~~~~----------~------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgG 120 (163)
++|++ .++.. . ... ..++++.+++ .+..++++.+||||
T Consensus 84 ~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G 157 (255)
T PRK11300 84 RTFQHV--RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL----LEHANRQAGNLAYG 157 (255)
T ss_pred EeccCc--ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh----hhhhhCChhhCCHH
Confidence 35554 22210 0 000 0123445555 66788999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 121 EKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 121 qkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||++|||||+ .+|+++||||||++||+.++..+.++|
T Consensus 158 ~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~L 196 (255)
T PRK11300 158 QQRRLEIARCMV----TQPEILMLDEPAAGLNPKETKELDELI 196 (255)
T ss_pred HHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 999999999996 789999999999999999999887753
No 136
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-31 Score=224.60 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=105.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ ..+++++||+ +++||+++|+| ||||||||| ++++.|+..| + ++...+. .++.+
T Consensus 24 ~v~~~~~~---~~~l~~vsl~-i~~Ge~~~llG-psGsGKSTL-Lr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 95 (377)
T PRK11607 24 NLTKSFDG---QHAVDDVSLT-IYKGEIFALLG-ASGCGKSTL-LRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINM 95 (377)
T ss_pred eEEEEECC---EEEEeeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 56677853 5799999999 99999999999 999999999 7888999877 1 2333332 34455
Q ss_pred cccCCCccccc----------CCC--C--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GPE--N--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+|. +.. . +..++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 96 vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L----~~~~~~~~~~LSgGq~QRVaLARAL~---- 165 (377)
T PRK11607 96 MFQSY--ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHM----QEFAKRKPHQLSGGQRQRVALARSLA---- 165 (377)
T ss_pred EeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHHHHh----
Confidence 66665 2331 111 0 11235566666 67889999999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|++++||||+|+||+..+..+.+.
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~ 191 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLE 191 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 78999999999999999999887653
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-31 Score=210.66 Aligned_cols=144 Identities=24% Similarity=0.312 Sum_probs=107.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|++. ..++++|+||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+...+++++
T Consensus 12 ~l~~~~~~~-~~~~l~~isl~-i~~Ge~~~I~G-~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 87 (269)
T PRK13648 12 NVSFQYQSD-ASFTLKDVSFN-IPKGQWTSIVG-HNGSGKSTI-AKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87 (269)
T ss_pred EEEEEcCCC-CCcceeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence 677888742 24699999999 99999999999 999999999 6778888776 1 23334444566665
Q ss_pred cccCCCcccc---------cCCC---CC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 LAQNQSAQAF---------LGPE---NP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 ~~q~~~~~~~---------~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|++...++ +... .. ..++++.+++ .+..+.++.+||||||||++|||||+ .
T Consensus 88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~laral~----~ 159 (269)
T PRK13648 88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM----LERADYEPNALSGGQKQRVAIAGVLA----L 159 (269)
T ss_pred EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCC----chhhhCCcccCCHHHHHHHHHHHHHH----c
Confidence 5665421111 0100 00 1124555555 56778899999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.+.|
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L 185 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLV 185 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999887753
No 138
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=3.8e-31 Score=206.92 Aligned_cols=139 Identities=24% Similarity=0.276 Sum_probs=103.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
++++.|++ .++++|+||+ |.+||+++|+| ||||||||| ++++.|+.+| + ++...+..++++.+
T Consensus 12 ~l~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 12 NVGYLAGD---AKILNNISFS-LRAGEFKLITG-PSGCGKSTL-LKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred ccEEeeCC---ceeeeccEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 66778853 5799999999 99999999999 999999999 6778888766 1 23333444455555
Q ss_pred cccCCCccccc-------------CCCCC----chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 77 LAQNQSAQAFL-------------GPENP----EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 77 ~~q~~~~~~~~-------------~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
++|.+ .++. ..... .+++++.+++ . ...++++.+|||||+||++|||||+ .+
T Consensus 86 ~~q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LS~G~~qrv~laral~----~~ 155 (225)
T PRK10247 86 CAQTP--TLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFAL----PDTILTKNIAELSGGEKQRISLIRNLQ----FM 155 (225)
T ss_pred Eeccc--ccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCC----ChHHhcCCcccCCHHHHHHHHHHHHHh----cC
Confidence 45543 2220 00110 1234555555 3 3568889999999999999999996 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+++||||||++||+.++..+.+.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~ 179 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEI 179 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH
Confidence 999999999999999999988764
No 139
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.97 E-value=2.7e-31 Score=216.25 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=105.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc----CHHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL----GLEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~----~~~~~~~~~~~q 79 (163)
+.++.|++ ..+|+|+||+ +++||+++|+| ||||||||| ++++.|+..| +. +.+. ...++++++.+.
T Consensus 7 ~l~~~~~~---~~~l~~is~~-i~~Gei~~l~G-~NGaGKTTL-l~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 7 SLTKLYGT---QNALDEVSFE-AQKGRIVGFLG-PNGAGKSTT-MKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEECC---EEEEEEeEEE-EeCCeEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 56778853 5799999999 99999999999 999999999 6778888777 21 1111 223455556333
Q ss_pred CCCcccccC---------------CC-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 80 NQSAQAFLG---------------PE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 80 ~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
.++..++.. .. ...+.+++.+++ .+..++++..||||||||++|||||+ ++|
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G~~qrv~la~al~----~~p 152 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL----RPEQHKKIGQLSKGYRQRVGLAQALI----HDP 152 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----chHhcCchhhCCHHHHHHHHHHHHHh----cCC
Confidence 332223311 00 011234556666 67788999999999999999999995 889
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||++||+.++..+++.|
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l 176 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVI 176 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHH
Confidence 999999999999999999988753
No 140
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=4.9e-31 Score=202.78 Aligned_cols=142 Identities=19% Similarity=0.167 Sum_probs=103.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc----CHHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL----GLEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~----~~~~~~~~~~~q 79 (163)
+.++.|++ .++++++||+ |++||+++|+| ||||||||| ++++.++.+| +. +.+. ....+++++.+.
T Consensus 6 ~l~~~~~~---~~il~~~s~~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 6 ELDFDYHD---QPLLQQISFH-LPAGGLLHLKG-SNGAGKTTL-LKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred EEEEEeCC---eeEEeeeeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 56788863 5799999999 99999999999 999999999 6778888876 21 1111 223455555333
Q ss_pred CCCccccc----------CC--CC---CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 80 NQSAQAFL----------GP--EN---PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 80 ~~~~~~~~----------~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
.++..++. .. .. ...++++.+++ .+..++++.+|||||+||++||||++ .+|++++|
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~~rv~laral~----~~p~~lil 151 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSL----EHLIDYPCGLLSSGQKRQVALLRLWM----SKAKLWLL 151 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCC----chhhhCChhhcCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 32212211 10 00 11234555555 45667888999999999999999996 78999999
Q ss_pred ecccCCCCHHHHHHHHhhC
Q psy17517 145 DEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~l 163 (163)
||||++||+.++..+.+.|
T Consensus 152 DEP~~~LD~~~~~~l~~~l 170 (200)
T PRK13540 152 DEPLVALDELSLLTIITKI 170 (200)
T ss_pred eCCCcccCHHHHHHHHHHH
Confidence 9999999999999988753
No 141
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.6e-31 Score=213.14 Aligned_cols=140 Identities=21% Similarity=0.181 Sum_probs=101.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHH---H-H
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDL---R-S 74 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~---~-~ 74 (163)
++.+.|. +.++++|+||+ |++||+++|+| ||||||||| ++++.|+.+| + ++...+..++ + +
T Consensus 29 ~~~~~~~---~~~il~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 29 EILKKTG---QTVGVNDVSLD-VREGEIFVIMG-LSGSGKSTL-LRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhcC---CceEeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 3444453 35689999999 99999999999 999999999 6778888776 1 2222222222 2 3
Q ss_pred hc--cccCCCcccccC---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 75 MA--LAQNQSAQAFLG---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 75 ~~--~~q~~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++ ++|.+ .++.. ... ...++++.+++ .+..++++.+||||||||++|||||+
T Consensus 103 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 103 KISMVFQSF--ALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGL----EGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred cEEEEecCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----HhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 34 44443 23211 000 01224555565 56778899999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|+++||||||++||+.++..+.++|
T Consensus 177 ----~~p~illLDEPt~~LD~~~~~~l~~~l 203 (269)
T cd03294 177 ----VDPDILLMDEAFSALDPLIRREMQDEL 203 (269)
T ss_pred ----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 789999999999999999999888753
No 142
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-31 Score=213.28 Aligned_cols=140 Identities=22% Similarity=0.241 Sum_probs=101.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--cccCHHHHHHhc--cccCC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSLGLEDLRSMA--LAQNQ 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~~~~~~~~~~--~~q~~ 81 (163)
+.++.|++ .++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| +.+ .+.+....+..+ ++|.+
T Consensus 6 ~l~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 6 HLYADYGG---KPALEDINLT-LESGELLVVLG-PSGCGKTTL-LNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred EEEEEeCC---eeeEeeeeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 56788853 5799999999 99999999999 999999999 6778888766 222 221111111123 55553
Q ss_pred Cccccc----------C-----CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCE
Q psy17517 82 SAQAFL----------G-----PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPF 141 (163)
Q Consensus 82 ~~~~~~----------~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~l 141 (163)
.++. . ... ...++++.+++ .+..++++.+||||||||++|||||+ .+|++
T Consensus 80 --~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgGq~qrl~laral~----~~p~l 149 (255)
T PRK11248 80 --GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL----EGAEKRYIWQLSGGQRQRVGIARALA----ANPQL 149 (255)
T ss_pred --ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----hhHhhCChhhCCHHHHHHHHHHHHHh----cCCCE
Confidence 2221 0 000 01234556665 56678889999999999999999996 78999
Q ss_pred EEeecccCCCCHHHHHHHHhhC
Q psy17517 142 FVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 142 llLDEPts~LD~~~~~~i~~~l 163 (163)
+||||||++||+.++..+.++|
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L 171 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLL 171 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHH
Confidence 9999999999999999887753
No 143
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.6e-31 Score=211.73 Aligned_cols=140 Identities=23% Similarity=0.250 Sum_probs=104.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|++ +++++|+||+ |.+||+++|+| ||||||||| ++++.|+.+| + ++...+..++++.+
T Consensus 16 ~l~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 16 NVSFRVPG---RTLLHPLSLT-FPAGKVTGLIG-HNGSGKSTL-LKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEEECC---EEEEeeeeeE-EcCCCEEEEEC-CCCCCHHHH-HHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 56788863 5799999999 99999999999 999999999 6778888776 2 22233344555555
Q ss_pred cccCCCcccc----------cCCC-------C-C------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 77 LAQNQSAQAF----------LGPE-------N-P------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~-------~-~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++|.+ .++ +... . . ...+++.+++ .+..++++.+||||||||++|||||+
T Consensus 90 v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 90 LPQQL--PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL----KPLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred eccCC--CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC----HHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 45543 111 0100 0 0 1124455555 56678899999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 164 ----~~p~lllLDEPt~~LD~~~~~~~~~~l 190 (265)
T PRK10575 164 ----QDSRCLLLDEPTSALDIAHQVDVLALV 190 (265)
T ss_pred ----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 144
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=4.8e-31 Score=205.21 Aligned_cols=147 Identities=24% Similarity=0.298 Sum_probs=104.2
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~- 76 (163)
.+.+|.|+.. .+++++|+||+ |++||+++|+| ||||||||| ++++.++..| + ++...+..++++.+
T Consensus 6 ~~l~~~~~~~-~~~~l~~i~~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 6 KNVSLRYRPN-LPPVLKNISFS-IKPGEKVGIVG-RTGSGKSSL-LLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEecCCC-CcccccceEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 3678889743 35799999999 99999999999 999999999 6778888776 2 22233444556666
Q ss_pred -cccCCCccccc---------CCCCCc---hhHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 -LAQNQSAQAFL---------GPENPE---EPYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 -~~q~~~~~~~~---------~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|.+ .++. ...... .+.++.+++.. ......++++..||+||+||++|||+|+
T Consensus 82 ~~~q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~---- 155 (221)
T cd03244 82 IIPQDP--VLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL---- 155 (221)
T ss_pred EECCCC--ccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh----
Confidence 44444 2321 000111 11233333310 1122345688999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|++++|||||++||+.++..+.++|
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l 182 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQKTI 182 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 145
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.3e-31 Score=196.45 Aligned_cols=141 Identities=23% Similarity=0.256 Sum_probs=109.1
Q ss_pred eeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--ccc
Q psy17517 11 FLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA--LAQ 79 (163)
Q Consensus 11 f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~--~~q 79 (163)
..|... +.++|+++||+ +.+||+.+|.| ||||||||| +++++.+..| .+++...+..+|.++ +.|
T Consensus 9 ~~y~a~-~a~il~~isl~-v~~Ge~iaitG-PSG~GKStl-lk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q 84 (223)
T COG4619 9 VGYLAG-DAKILNNISLS-VRAGEFIAITG-PSGCGKSTL-LKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQ 84 (223)
T ss_pred HHhhcC-CCeeecceeee-ecCCceEEEeC-CCCccHHHH-HHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHc
Confidence 345432 67899999999 99999999999 999999999 6777777766 478888999999988 555
Q ss_pred CC--------Cccccc---CCCCCc----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 80 NQ--------SAQAFL---GPENPE----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 80 ~~--------~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
.| +|.+|. ..+..+ ...+.++++ +....++.+.+||||||||+|++|-|. .-|++|+|
T Consensus 85 ~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l---~~~~L~k~it~lSGGE~QriAliR~Lq----~~P~ILLL 157 (223)
T COG4619 85 TPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFAL---PDSILTKNITELSGGEKQRIALIRNLQ----FMPKILLL 157 (223)
T ss_pred CccccccchhhccccchHHhccCCChHHHHHHHHHcCC---chhhhcchhhhccchHHHHHHHHHHhh----cCCceEEe
Confidence 55 333331 111111 124555555 245678889999999999999999996 56999999
Q ss_pred ecccCCCCHHHHHHHHhh
Q psy17517 145 DEIDAALDNTNIGKVASY 162 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~ 162 (163)
|||||+||+.+++.+-++
T Consensus 158 DE~TsALD~~nkr~ie~m 175 (223)
T COG4619 158 DEITSALDESNKRNIEEM 175 (223)
T ss_pred cCchhhcChhhHHHHHHH
Confidence 999999999999987664
No 146
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.1e-31 Score=207.88 Aligned_cols=140 Identities=20% Similarity=0.198 Sum_probs=103.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc-----------CHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL-----------GLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~-----------~~~~~ 72 (163)
+.+|.|++ .++++|+||+ +++||+++|+| ||||||||| ++++.|+..| +. +.+. ....+
T Consensus 7 ~l~~~~~~---~~il~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 7 GINCFYGA---HQALFDITLD-CPQGETLVLLG-PSGAGKSSL-LRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred eeEEEECC---eeeEeeeeeE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 67888863 5799999999 99999999999 999999999 6778888776 21 1111 12344
Q ss_pred HHhc--cccCCCcccccCC--------------CCC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 73 RSMA--LAQNQSAQAFLGP--------------ENP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 73 ~~~~--~~q~~~~~~~~~~--------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
++++ ++|.+ .+|... ... ..++++.+++ .+..++.+..||||||||++|||
T Consensus 81 ~~~i~~~~q~~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G~~qrv~lar 154 (242)
T PRK11124 81 RRNVGMVFQQY--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL----KPYADRFPLHLSGGQQQRVAIAR 154 (242)
T ss_pred HhheEEEecCc--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----hhhhhCChhhCCHHHHHHHHHHH
Confidence 5555 44443 222110 000 1124455555 56778899999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.+.|
T Consensus 155 al~----~~p~llilDEPt~~LD~~~~~~l~~~l 184 (242)
T PRK11124 155 ALM----MEPQVLLFDEPTAALDPEITAQIVSII 184 (242)
T ss_pred HHh----cCCCEEEEcCCCCcCCHHHHHHHHHHH
Confidence 996 789999999999999999999887653
No 147
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.4e-31 Score=212.58 Aligned_cols=145 Identities=23% Similarity=0.227 Sum_probs=104.4
Q ss_pred cceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccc----cCHHHH
Q psy17517 8 AQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRS----LGLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~----~~~~~~ 72 (163)
+++|.|++.. ..++|+|+||+ |++||+++|+| ||||||||| ++++.++..| + ++.. .+...+
T Consensus 7 ~l~~~~~~~~~~~~~~l~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (280)
T PRK13649 7 NVSYTYQAGTPFEGRALFDVNLT-IEDGSYTAFIG-HTGSGKSTI-MQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQI 83 (280)
T ss_pred EEEEEcCCCCccccceeeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccCHHHH
Confidence 6788897421 14699999999 99999999999 999999999 7778888776 1 1221 122345
Q ss_pred HHhc--cccCCCccccc---------C--CC-CCc-------hhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHH
Q psy17517 73 RSMA--LAQNQSAQAFL---------G--PE-NPE-------EPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 73 ~~~~--~~q~~~~~~~~---------~--~~-~~~-------~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAra 130 (163)
++.+ ++|++...++. . .. ... +++++.+++ . ...++++.+||||||||++||||
T Consensus 84 ~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 84 RKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGI----SESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----ChhhhhCCcccCCHHHHHHHHHHHH
Confidence 5555 55554212221 0 00 001 123444555 4 35688899999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ .+|+++||||||++||+.++..+.+.|
T Consensus 160 l~----~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (280)
T PRK13649 160 LA----MEPKILVLDEPTAGLDPKGRKELMTLF 188 (280)
T ss_pred HH----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 96 789999999999999999999887753
No 148
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=5.7e-31 Score=209.91 Aligned_cols=144 Identities=22% Similarity=0.211 Sum_probs=104.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ .++++|+||+ |.+||+++|+| +|||||||| ++++.|+..| + ++...+...+++.+
T Consensus 7 ~l~~~~~~---~~il~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 7 NLSVRLGG---RTLLDDVSLT-LRPGEVVAILG-PNGAGKSTL-LRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeCC---eeeeeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 56788863 5799999999 99999999999 999999999 7778888766 2 22333334445555
Q ss_pred cccCCCccccc----------CCCC----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc--
Q psy17517 77 LAQNQSAQAFL----------GPEN----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH-- 134 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~-- 134 (163)
++|++. ++. .... ...++++.+++ .+..++++.+||||||||++|||||+.+
T Consensus 81 ~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGe~qrv~la~al~~~~~ 154 (258)
T PRK13548 81 LPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDL----AHLAGRDYPQLSGGEQQRVQLARVLAQLWE 154 (258)
T ss_pred EccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCC----HhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 455432 211 1000 01124555565 5677889999999999999999999620
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+-.+|++++|||||++||+.++..+.++|
T Consensus 155 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (258)
T PRK13548 155 PDGPPRWLLLDEPTSALDLAHQHHVLRLA 183 (258)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00379999999999999999999887653
No 149
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.3e-31 Score=216.64 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=104.2
Q ss_pred cceeeCCCC-CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc----c--c-------cccccCHHHHH
Q psy17517 8 AQAFLGPEN-PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR----I--A-------TIRSLGLEDLR 73 (163)
Q Consensus 8 ~~~f~y~~~-~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~----~--~-------~i~~~~~~~~~ 73 (163)
+.++.|+.. +...+++||||+ |.+||+++|+| +|||||||| ++++.++.+ + + ++...+..+++
T Consensus 8 ~l~~~y~~~~~~~~~l~~vsl~-i~~Ge~~~ivG-~sGsGKSTL-l~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (330)
T PRK15093 8 NLTIEFKTSDGWVKAVDRVSMT-LTEGEIRGLVG-ESGSGKSLI-AKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred eeEEEEeCCCCCEEEEeeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHHccCCCCCCCcceEEEECCEECCcCCHHHHH
Confidence 567777542 235799999999 99999999999 999999999 566677754 2 1 33334443332
Q ss_pred ---H-hc--cccCCCccccc-------------C--CC-----C------CchhHHHhchhcccCCCccCCCCCCCCHHH
Q psy17517 74 ---S-MA--LAQNQSAQAFL-------------G--PE-----N------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGE 121 (163)
Q Consensus 74 ---~-~~--~~q~~~~~~~~-------------~--~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq 121 (163)
+ .+ +||++...++. . .. . ...++++.+++.. .....++++.+|||||
T Consensus 85 ~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~-~~~~~~~~p~~LSgG~ 163 (330)
T PRK15093 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD-HKDAMRSFPYELTEGE 163 (330)
T ss_pred HHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC-hHHHHhCCchhCCHHH
Confidence 2 34 77776422210 0 00 0 0123556666610 0124578999999999
Q ss_pred HHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 122 KTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 122 kQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|||+|||||+ .+|+++|+||||++||+.++.++.++|
T Consensus 164 ~QRv~iArAL~----~~P~llilDEPts~LD~~~~~~i~~lL 201 (330)
T PRK15093 164 CQKVMIAIALA----NQPRLLIADEPTNAMEPTTQAQIFRLL 201 (330)
T ss_pred HHHHHHHHHHH----CCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 99999999996 789999999999999999999988754
No 150
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=4.7e-31 Score=207.81 Aligned_cols=140 Identities=21% Similarity=0.241 Sum_probs=103.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccccc--CHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSL--GLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~--~~~~~~~~~ 76 (163)
+.++.|++ .++++|+||+ +.+||+++|+| +|||||||| ++++.++..| + ++... +...+++++
T Consensus 6 ~l~~~~~~---~~il~~~s~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 6 NVSKHFGP---TQVLHNIDLN-IDQGEVVVIIG-PSGSGKSTL-LRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred eEEEEECC---eEEeeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 56778853 5799999999 99999999999 999999999 6778888776 2 22221 123445555
Q ss_pred --cccCCCccccc----------CC---CCC--------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 77 --LAQNQSAQAFL----------GP---ENP--------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 77 --~~q~~~~~~~~----------~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
++|++ .++. .. ... ..++++.+++ .+..++++..||||||||++|||||+
T Consensus 80 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G~~qrv~la~al~- 152 (240)
T PRK09493 80 GMVFQQF--YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL----AERAHHYPSELSGGQQQRVAIARALA- 152 (240)
T ss_pred EEEeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC----hHHHhcChhhcCHHHHHHHHHHHHHh-
Confidence 45543 2221 10 000 1124555555 56678899999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|++++|||||++||+.++..+.++|
T Consensus 153 ---~~p~llllDEP~~~LD~~~~~~l~~~l 179 (240)
T PRK09493 153 ---VKPKLMLFDEPTSALDPELRHEVLKVM 179 (240)
T ss_pred ---cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 151
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.6e-30 Score=203.25 Aligned_cols=147 Identities=23% Similarity=0.297 Sum_probs=101.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~~~ 78 (163)
+.+|.|+. ..++++|+||+ +++||+++|+| ||||||||| ++++.++.+| + ++...+...+++.+.+
T Consensus 7 ~l~~~~~~--~~~~l~~isl~-i~~G~~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 7 NVNFSYDE--KKPVLKDINFS-IKPGETVAIVG-PTGAGKTTL-INLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEecCC--CCccccceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 57788863 24699999999 99999999999 999999999 6777888766 2 2222333455555533
Q ss_pred cCCCccccc---------C-CCCCchh---HHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAFL---------G-PENPEEP---YLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~~---------~-~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..++..++. . ....... +++.+++.. ......+.++.+||||||||++|||+|+ .+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~----~~ 157 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML----RD 157 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh----cC
Confidence 333222221 1 1111111 222222210 1133456678999999999999999996 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+++||||||++||+.++..+.+.|
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l 182 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEAL 182 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHH
Confidence 9999999999999999999887753
No 152
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-31 Score=210.67 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=105.4
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~- 76 (163)
.++++.|++ ..+++++||+ +.+||+++|+| ||||||||| ++++.|+.++ + ++...+...+++.+
T Consensus 11 ~~l~~~~~~---~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 11 EQLTLGYGK---YTVAENLTVE-IPDGHFTAIIG-PNGCGKSTL-LRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred EEEEEEECC---EEEeeecceE-ECCCCEEEEEC-CCCCCHHHH-HHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 367888863 5799999999 99999999999 999999999 6778888776 2 22233334445555
Q ss_pred -cccCCCccccc----------C-CCC-------------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 77 -LAQNQSAQAFL----------G-PEN-------------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 77 -~~q~~~~~~~~----------~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
++|++ .++. . ... ...++++.+++ .+..++++.+||||||||++|||||
T Consensus 85 ~v~q~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~Gq~qrv~laral 158 (265)
T PRK10253 85 LLAQNA--TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI----THLADQSVDTLSGGQRQRAWIAMVL 158 (265)
T ss_pred EeeccC--cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC----HHHhcCCcccCChHHHHHHHHHHHH
Confidence 45544 2221 0 000 01124455555 5677889999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.+.|
T Consensus 159 ~----~~p~llllDEPt~gLD~~~~~~l~~~L 186 (265)
T PRK10253 159 A----QETAIMLLDEPTTWLDISHQIDLLELL 186 (265)
T ss_pred h----cCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 6 789999999999999999999887753
No 153
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.2e-31 Score=212.49 Aligned_cols=143 Identities=24% Similarity=0.353 Sum_probs=106.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccc-------cCHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRS-------LGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~-------~~~~~~~~~~ 76 (163)
+++|.|++ ..++++|+||+ |.+||+++|+| ||||||||| ++++.++.++ +. +.+ .+...+++.+
T Consensus 6 ~l~~~~~~--~~~~l~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 6 DLKYSYPD--GTEALKGINFK-AEKGEMVALLG-PNGAGKSTL-FLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEeCC--CCeeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 57888963 35699999999 99999999999 999999999 6778888776 21 111 1122345555
Q ss_pred --cccCCCccccc---------C-----CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 --LAQNQSAQAFL---------G-----PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 --~~q~~~~~~~~---------~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
++|++...++. . ... ...++++.+++ .+..++++.+|||||+||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L----~~~~~~~~~~LS~Gq~qrv~laral~--- 153 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGM----EGFENKPPHHLSGGQKKRVAIAGILA--- 153 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----chhhcCChhhCCHHHHHHHHHHHHHh---
Confidence 56664222221 0 000 01234555666 67788999999999999999999996
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 154 -~~p~llllDEPt~gLD~~~~~~l~~~l 180 (275)
T PRK13639 154 -MKPEIIVLDEPTSGLDPMGASQIMKLL 180 (275)
T ss_pred -cCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 789999999999999999999987753
No 154
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=4e-31 Score=209.70 Aligned_cols=139 Identities=24% Similarity=0.299 Sum_probs=103.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccC----------
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLG---------- 68 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~---------- 68 (163)
+++|.|+. .++++|+||+ |++||+++|+| ||||||||| ++++.++..| + ++..++
T Consensus 5 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 5 DVTKRFGI---LTVLDGLNFS-VAAGEKVALIG-PSGSGKSTI-LRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred EEEEEeCC---eeEEeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 67888963 5799999999 99999999999 999999999 6778888776 1 222111
Q ss_pred ---HHHHHHhc--cccCCCcccccC-----------C---CCC-------chhHHHhchhcccCCCccCCCCCCCCHHHH
Q psy17517 69 ---LEDLRSMA--LAQNQSAQAFLG-----------P---ENP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEK 122 (163)
Q Consensus 69 ---~~~~~~~~--~~q~~~~~~~~~-----------~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqk 122 (163)
...+++.+ ++|++ .++.. . ... ..++++.+++ .+..++.+.+|||||+
T Consensus 79 ~~~~~~~~~~i~~v~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL----ADKADHMPAQLSGGQQ 152 (252)
T ss_pred hhHHHHHhhCeEEEecCc--ccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----hhHhhcChhhcCHHHH
Confidence 12345555 45543 22210 0 000 1234555565 5677889999999999
Q ss_pred HHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 123 TVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 123 QrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
||++|||||+ .+|+++||||||++||+.++..+.+.
T Consensus 153 qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~ 188 (252)
T TIGR03005 153 QRVAIARALA----MRPKVMLFDEVTSALDPELVGEVLNV 188 (252)
T ss_pred HHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 9999999996 78999999999999999999988765
No 155
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.2e-31 Score=210.72 Aligned_cols=140 Identities=19% Similarity=0.205 Sum_probs=103.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|++ .++|+++||+ +++||+++|+| +|||||||| ++++.++.+| + ++...+..++++.+
T Consensus 7 ~l~~~~~~---~~il~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 7 NLTVGYGT---KRILNDLSLS-LPTGKITALIG-PNGCGKSTL-LKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred eEEEEECC---EEEEeeeeeE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 57788863 5799999999 99999999999 999999999 6778888766 2 22223333445555
Q ss_pred cccCCCcccc----------cCC-------C---CC----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 77 LAQNQSAQAF----------LGP-------E---NP----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~-------~---~~----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++|++ .++ +.. . .. ..++++.+++ .+..++++.+|||||+||++||||++
T Consensus 81 ~~q~~--~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~ 154 (255)
T PRK11231 81 LPQHH--LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRI----NHLADRRLTDLSGGQRQRAFLAMVLA 154 (255)
T ss_pred ecccC--CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCC----HHHHcCCcccCCHHHHHHHHHHHHHh
Confidence 45543 121 110 0 00 1123444555 56678899999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 155 ----~~p~llllDEP~~~LD~~~~~~l~~~l 181 (255)
T PRK11231 155 ----QDTPVVLLDEPTTYLDINHQVELMRLM 181 (255)
T ss_pred ----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 156
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=4.7e-31 Score=226.94 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=106.4
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc-------cccCHHHHHHhc-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI-------RSLGLEDLRSMA- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i-------~~~~~~~~~~~~- 76 (163)
.+.+|.|++ .++|+|+||+ |++||+++|+| ||||||||| ++++.|+.+| +.+ ...+..++++.+
T Consensus 7 ~~l~~~~~~---~~il~~vsl~-i~~Ge~~~liG-~nGsGKSTL-l~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 7 SQGTFRLSD---TKTLQLPSLT-LNAGDSWAFVG-ANGSGKSAL-ARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EeEEEEcCC---eeecccceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 367888963 4699999999 99999999999 999999999 6778888766 222 122333344444
Q ss_pred -cccCCCccccc------CC---CC---------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 -LAQNQSAQAFL------GP---EN---------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 -~~q~~~~~~~~------~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|++...++. .. +. +.+++++.+++ .+..++++.+||||||||++|||||+ .
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~la~al~----~ 152 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGI----TALLDRRFKYLSTGETRKTLLCQALM----S 152 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCC----HhhhhCCcccCCHHHHHHHHHHHHHH----c
Confidence 56654321110 00 00 11235566666 66788999999999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.++|
T Consensus 153 ~p~lllLDEPt~~LD~~~~~~l~~~l 178 (490)
T PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELL 178 (490)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999988753
No 157
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.97 E-value=6.9e-31 Score=209.13 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=102.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------c-----ccccCHHHH-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------T-----IRSLGLEDL- 72 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~-----i~~~~~~~~- 72 (163)
+++|.|++ +++++++||+ |.+||+++|+| ||||||||| ++++.++.+| + + +...+...+
T Consensus 11 ~l~~~~~~---~~il~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 11 GLTKLYGP---RKGCRDVSFD-LYPGEVLGIVG-ESGSGKTTL-LNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eeEEEcCC---ceeeeeeeEE-EeCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 67788863 5799999999 99999999999 999999999 6778888776 2 2 222333222
Q ss_pred ---HHhc--cccCCCcccccC---------------CCCC------chhHHHhchhcccCC-CccCCCCCCCCHHHHHHH
Q psy17517 73 ---RSMA--LAQNQSAQAFLG---------------PENP------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVA 125 (163)
Q Consensus 73 ---~~~~--~~q~~~~~~~~~---------------~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrv 125 (163)
++.+ ++|++...++.. .... ..++++.+++ . ...++.+.+||||||||+
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LS~Gq~qrl 160 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEI----DAARIDDLPTTFSGGMQQRL 160 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCC----ChhHHhCCCccCCHHHHHHH
Confidence 2234 566653111110 0000 0124445554 3 356788999999999999
Q ss_pred HHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 126 ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 126 aiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|||||+ .+|+++||||||++||+.++..+.+.
T Consensus 161 ~laral~----~~p~llllDEPt~~LD~~~~~~l~~~ 193 (258)
T PRK11701 161 QIARNLV----THPRLVFMDEPTGGLDVSVQARLLDL 193 (258)
T ss_pred HHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 9999996 78999999999999999999988765
No 158
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6e-31 Score=207.36 Aligned_cols=139 Identities=21% Similarity=0.206 Sum_probs=102.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHH-HHHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLED-LRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~-~~~~~- 76 (163)
+.+|.|++ +++++|+||+ +++||+++|+| ||||||||| ++++.++.+| + ++...+..+ .++.+
T Consensus 8 ~l~~~~~~---~~~l~~~sl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 8 NLAKAYKG---RRVVEDVSLT-VNSGEIVGLLG-PNGAGKTTT-FYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred CcEEEeCC---EEEEeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 67788863 5799999999 99999999999 999999999 7778888766 2 222223222 34445
Q ss_pred -cccCCCccccc----------C--CC-C-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 77 -LAQNQSAQAFL----------G--PE-N-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 77 -~~q~~~~~~~~----------~--~~-~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
++|++ .++. . .. . . ..++++.+++ .+..++++.+|||||+||++|||||+
T Consensus 82 ~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~-- 153 (241)
T PRK10895 82 YLPQEA--SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI----EHLRDSMGQSLSGGERRRVEIARALA-- 153 (241)
T ss_pred EeccCC--cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCC----HHHhhcchhhCCHHHHHHHHHHHHHh--
Confidence 45543 2221 0 00 0 0 1124555555 55667889999999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|+++||||||++||+.++..+.+.
T Consensus 154 --~~p~llllDEPt~~LD~~~~~~l~~~ 179 (241)
T PRK10895 154 --ANPKFILLDEPFAGVDPISVIDIKRI 179 (241)
T ss_pred --cCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 78999999999999999999888764
No 159
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=1.8e-30 Score=195.67 Aligned_cols=126 Identities=24% Similarity=0.343 Sum_probs=95.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~~~ 78 (163)
+.++.|++. ..++++++||+ +++||+++|+| ||||||||| ++++.++.+| + ++...+...+++++.+
T Consensus 5 ~l~~~~~~~-~~~~l~~~~~~-i~~Ge~~~i~G-~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 5 NVSFRYPGA-EPPVLRNVSFS-IEPGESLAIIG-PSGSGKSTL-ARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred EEEEEcCCC-CCcceeeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 567888742 35699999999 99999999999 999999999 6777888766 1 2333344455666644
Q ss_pred cCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 79 QNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 79 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
..++..++ . . .+.+.+ |||||+||++|||||+ .+|+++||||||++||+.++..
T Consensus 81 ~~q~~~~~-~-~----tv~~~l----------------LS~G~~qrv~la~al~----~~p~~lllDEPt~~LD~~~~~~ 134 (173)
T cd03246 81 LPQDDELF-S-G----SIAENI----------------LSGGQRQRLGLARALY----GNPRILVLDEPNSHLDVEGERA 134 (173)
T ss_pred ECCCCccc-c-C----cHHHHC----------------cCHHHHHHHHHHHHHh----cCCCEEEEECCccccCHHHHHH
Confidence 44433333 1 1 122221 9999999999999996 7899999999999999999998
Q ss_pred HHhhC
Q psy17517 159 VASYI 163 (163)
Q Consensus 159 i~~~l 163 (163)
+.+.|
T Consensus 135 l~~~l 139 (173)
T cd03246 135 LNQAI 139 (173)
T ss_pred HHHHH
Confidence 87753
No 160
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=9.5e-31 Score=207.02 Aligned_cols=144 Identities=21% Similarity=0.249 Sum_probs=101.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc-------c-------ccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-------T-------IRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-------~-------i~~--~~~~~ 71 (163)
+++|.|+. .++++|+||+ |++||+++|+| +|||||||| ++++.|+..|. . +.. .....
T Consensus 6 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 6 NLNLFYGE---KEALKNINLD-IPKNQVTALIG-PSGCGKSTL-LRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEECC---eeeecceeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 57788863 4699999999 99999999999 999999999 66777776532 1 111 11223
Q ss_pred HHHhc--cccCCCccccc-----------CCCC--C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL-----------GPEN--P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~-----------~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .++. .... . ...+++.+++.....+..++++.+||||||||++|||
T Consensus 80 ~~~~i~~v~q~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 80 LRRRVGMVFQKP--NPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHhheEEEecCc--ccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 44555 55554 2221 0000 0 0124455555100005567889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.++|
T Consensus 158 al~----~~p~llllDEPt~~LD~~~~~~l~~~l 187 (247)
T TIGR00972 158 ALA----VEPEVLLLDEPTSALDPIATGKIEELI 187 (247)
T ss_pred HHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 161
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.6e-30 Score=202.60 Aligned_cols=146 Identities=22% Similarity=0.295 Sum_probs=102.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|++. +.++++++||+ +.+||+++|+| ||||||||| ++++.|+.+| + ++...+...+++++
T Consensus 5 ~l~~~~~~~-~~~~l~~i~~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 5 NVTFRYPGD-GPPVLRDISLD-IPAGETVALVG-PSGSGKSTL-VNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred EEEEEeCCC-CccceeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 567788642 24799999999 99999999999 999999999 6778888776 2 22223344556666
Q ss_pred cccCCCccccc---------CCCC-Cchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL---------GPEN-PEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~---------~~~~-~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .++. .... .... ..+..++. .......+.++..||||||||++|||||+
T Consensus 81 ~~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~---- 154 (234)
T cd03251 81 VSQDV--FLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL---- 154 (234)
T ss_pred eCCCC--eeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh----
Confidence 44443 2221 1011 1111 11111110 01134566789999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l 181 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAAL 181 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 162
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.97 E-value=5.3e-31 Score=217.12 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=103.3
Q ss_pred cceeeCCCC-CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-----c-------cccccCHHHH--
Q psy17517 8 AQAFLGPEN-PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-----A-------TIRSLGLEDL-- 72 (163)
Q Consensus 8 ~~~f~y~~~-~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-----~-------~i~~~~~~~~-- 72 (163)
+.++.|+.. +..++++||||+ |.+||+++|+| +|||||||| .+++.++.++ + ++...+..++
T Consensus 17 ~l~~~~~~~~~~~~~l~~vsl~-i~~Ge~~~ivG-~sGsGKSTL-~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~ 93 (330)
T PRK09473 17 DLRVTFSTPDGDVTAVNDLNFS-LRAGETLGIVG-ESGSGKSQT-AFALMGLLAANGRIGGSATFNGREILNLPEKELNK 93 (330)
T ss_pred CeEEEEecCCCCEEEEeeeEEE-EcCCCEEEEEC-CCCchHHHH-HHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHH
Confidence 455666532 235799999999 99999999999 999999999 5666777654 1 3334444443
Q ss_pred -HH-hc--cccCCCccccc--------------CCCCCc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHH
Q psy17517 73 -RS-MA--LAQNQSAQAFL--------------GPENPE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAAL 127 (163)
Q Consensus 73 -~~-~~--~~q~~~~~~~~--------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvai 127 (163)
|. .+ +||++...++. ...... .++++.+++... ....++++.+|||||+|||+|
T Consensus 94 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~-~~~~~~~p~~LSgG~~QRv~I 172 (330)
T PRK09473 94 LRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA-RKRMKMYPHEFSGGMRQRVMI 172 (330)
T ss_pred HhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCh-HHHhcCCcccCCHHHHHHHHH
Confidence 32 34 78876322221 000011 124555555100 123467999999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||+ .+|+++|+||||++||+.++.++.++|
T Consensus 173 ArAL~----~~P~llilDEPts~LD~~~~~~i~~lL 204 (330)
T PRK09473 173 AMALL----CRPKLLIADEPTTALDVTVQAQIMTLL 204 (330)
T ss_pred HHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 99996 789999999999999999999988753
No 163
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.97 E-value=1.2e-30 Score=209.07 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=102.0
Q ss_pred cceeeCCCC------CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHH
Q psy17517 8 AQAFLGPEN------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~------~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~ 72 (163)
++++.|+.. ++.++++|+||+ |++||+++|+| ||||||||| ++++.++.+| + ++.......+
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~l~~vsl~-i~~Ge~~~i~G-~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 85 (267)
T PRK15112 9 NLSKTFRYRTGWFRRQTVEAVKPLSFT-LREGQTLAIIG-ENGSGKSTL-AKMLAGMIEPTSGELLIDDHPLHFGDYSYR 85 (267)
T ss_pred ceEEEecCCCCcccccccceeeeeeEE-ecCCCEEEEEc-CCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCchhhH
Confidence 566777521 235799999999 99999999999 999999999 6778888877 2 2222222233
Q ss_pred HHhc--cccCCCccccc--------------CC--CCC-----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 73 RSMA--LAQNQSAQAFL--------------GP--ENP-----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 73 ~~~~--~~q~~~~~~~~--------------~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
++.+ ++|++...++. .. ... ..++++.+++ .....+.++.+||||||||++|||
T Consensus 86 ~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l---~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 86 SQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL---LPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC---ChHHHhcCchhcCHHHHHHHHHHH
Confidence 3445 55554211110 00 000 1124455554 123456788999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.+.|
T Consensus 163 al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 192 (267)
T PRK15112 163 ALI----LRPKVIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred HHH----hCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887653
No 164
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.7e-31 Score=212.49 Aligned_cols=144 Identities=24% Similarity=0.317 Sum_probs=106.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc-----c-------ccccCHHHHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-----T-------IRSLGLEDLRSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-----~-------i~~~~~~~~~~~ 75 (163)
+.+|.|++. ..+++++|||+ |.+||+++|+| ||||||||| ++++.|+..|. . +.......++++
T Consensus 10 ~l~~~~~~~-~~~~l~~v~l~-i~~Ge~~~I~G-~nGaGKSTL-l~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ 85 (282)
T PRK13640 10 HVSFTYPDS-KKPALNDISFS-IPRGSWTALIG-HNGSGKSTI-SKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREK 85 (282)
T ss_pred EEEEEcCCC-CccceeeEEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhh
Confidence 578888643 34699999999 99999999999 999999999 67778887652 2 222233344555
Q ss_pred c--cccCCCcccc---------cCCCC---C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 76 A--LAQNQSAQAF---------LGPEN---P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 76 ~--~~q~~~~~~~---------~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
+ ++|++...++ +.... . ..++++.+++ .+..++++.+|||||+||++|||||+
T Consensus 86 ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L----~~~~~~~~~~LS~G~~qrv~laral~-- 159 (282)
T PRK13640 86 VGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGM----LDYIDSEPANLSGGQKQRVAIAGILA-- 159 (282)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC----hhHhcCCcccCCHHHHHHHHHHHHHH--
Confidence 5 5666532221 11000 0 1224556666 67788999999999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 160 --~~P~llllDEPt~gLD~~~~~~l~~~l 186 (282)
T PRK13640 160 --VEPKIIILDESTSMLDPAGKEQILKLI 186 (282)
T ss_pred --cCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 165
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=4.8e-31 Score=203.96 Aligned_cols=142 Identities=23% Similarity=0.251 Sum_probs=102.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--cccC--HHHHHHhccccCC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSLG--LEDLRSMALAQNQ 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~~--~~~~~~~~~~q~~ 81 (163)
++++.|++ ..+++|+||+ |.+||+++|+| ||||||||| ++++.++.++ +.+ .+.+ ...+++++.+..+
T Consensus 7 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 7 DLACVRGG---RVLFSGLSFT-LAAGEALVLTG-PNGSGKTTL-LRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred eEEEEECC---eEEEeceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 56778853 4699999999 99999999999 999999999 6778888766 221 1111 1124555533333
Q ss_pred Cccccc------------CC-CCC---chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEee
Q psy17517 82 SAQAFL------------GP-ENP---EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLD 145 (163)
Q Consensus 82 ~~~~~~------------~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLD 145 (163)
...++. .. ... ..++++.+++ ....+.++.+||||||||++|||||+ .+|+++|||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~la~al~----~~p~llllD 152 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL----APLAHLPFGYLSAGQKRRVALARLLV----SNRPIWILD 152 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCC----HHHHcCChhhcCHHHHHHHHHHHHHh----cCCCEEEEe
Confidence 222211 00 011 1235556666 55667889999999999999999996 789999999
Q ss_pred cccCCCCHHHHHHHHhhC
Q psy17517 146 EIDAALDNTNIGKVASYI 163 (163)
Q Consensus 146 EPts~LD~~~~~~i~~~l 163 (163)
|||++||+.++.++.+.|
T Consensus 153 EPt~~LD~~~~~~l~~~l 170 (207)
T PRK13539 153 EPTAALDAAAVALFAELI 170 (207)
T ss_pred CCcccCCHHHHHHHHHHH
Confidence 999999999999987753
No 166
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.8e-31 Score=207.13 Aligned_cols=144 Identities=21% Similarity=0.200 Sum_probs=102.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--c-------cccccCHHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--A-------TIRSLGLEDLR 73 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~-------~i~~~~~~~~~ 73 (163)
++++.|++ .++++|+||+ |++||+++|+| ||||||||| ++++.|+.. | + ++...+...++
T Consensus 8 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 8 DLKVSFGQ---VEVLDGVNLE-IPDNTITALMG-PSGSGKSTL-LRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eeEEEECC---eeeeecceeE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 57788863 5799999999 99999999999 999999999 667777764 2 2 23333444556
Q ss_pred Hhc--cccCCCccccc----------C--CCC---C-c------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 74 SMA--LAQNQSAQAFL----------G--PEN---P-E------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 74 ~~~--~~q~~~~~~~~----------~--~~~---~-~------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+.+ ++|++. ++. . ... . . .++++.+++.....+..++++.+||||||||++|||
T Consensus 82 ~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 159 (250)
T PRK14247 82 RRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159 (250)
T ss_pred ccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence 555 555542 221 0 000 0 0 123444454111123567889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++.++.+.|
T Consensus 160 al~----~~p~lllLDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14247 160 ALA----FQPEVLLADEPTANLDPENTAKIESLF 189 (250)
T ss_pred HHh----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 167
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3e-30 Score=202.55 Aligned_cols=147 Identities=26% Similarity=0.350 Sum_probs=102.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~~~ 78 (163)
+.++.|++ +..+++|+||+ |.+||+++|+| ||||||||| ++++.|+.+| + ++...+...+++.+++
T Consensus 5 ~l~~~~~~--~~~~l~~i~~~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 5 NVTFAYDP--GRPVLKDVSFT-IPAGKKVAIVG-PSGSGKSTI-LRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred EEEEEeCC--CCceeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 56788864 25699999999 99999999999 999999999 6778888776 2 2233344455665644
Q ss_pred cCCCccccc---------C-CCCCchh---HHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAFL---------G-PENPEEP---YLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~~---------~-~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..++..++. . ....... .++.+++.. ......++++..||||||||++|||||+ .+
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~----~~ 155 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL----KN 155 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh----cC
Confidence 443333331 1 1111111 111212100 1123456678899999999999999996 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+++||||||++||+.++..+.+.|
T Consensus 156 p~llllDEP~~~LD~~~~~~l~~~l 180 (236)
T cd03253 156 PPILLLDEATSALDTHTEREIQAAL 180 (236)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999887653
No 168
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=6.9e-31 Score=228.69 Aligned_cols=145 Identities=19% Similarity=0.138 Sum_probs=107.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|.||+ +.++|+|+||+ |++||.++|+| ||||||||| .+++.|+++| .++.+.+..++++++.+
T Consensus 327 ~v~f~y~~--~~~~l~~i~~~-i~~G~~~aivG-~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 327 NVTFAYQD--NGFSVGPINLT-IKRGELLFLIG-GNGSGKSTL-AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred EEEEEeCC--CCeEEecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 67899984 35799999999 99999999999 999999999 6788899877 24566777788888744
Q ss_pred cCCCcccccC--CCC----Cc---hhHHHhchhcccCCCccCC--CCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecc
Q psy17517 79 QNQSAQAFLG--PEN----PE---EPYLQGVNYNCVAPGKRFQ--PMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEI 147 (163)
Q Consensus 79 q~~~~~~~~~--~~~----~~---~~~~~~~~~~~~~~~~~~~--~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP 147 (163)
..++..+|.. .++ .. .++++.+++.... ...+. .+.+||||||||++||||++ ++|++++||||
T Consensus 402 v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~G~~LSgGq~qRl~lARal~----~~~~ililDE~ 476 (547)
T PRK10522 402 VFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKL-ELEDGRISNLKLSKGQKKRLALLLALA----EERDILLLDEW 476 (547)
T ss_pred EecChhHHHHhhccccCchHHHHHHHHHHHcCCchhh-hccccCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEECC
Confidence 4444445421 111 11 1244455441110 00111 25689999999999999995 89999999999
Q ss_pred cCCCCHHHHHHHHhh
Q psy17517 148 DAALDNTNIGKVASY 162 (163)
Q Consensus 148 ts~LD~~~~~~i~~~ 162 (163)
||+||+.++..+.+.
T Consensus 477 ts~LD~~~~~~i~~~ 491 (547)
T PRK10522 477 AADQDPHFRREFYQV 491 (547)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999987653
No 169
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.97 E-value=1.7e-30 Score=228.02 Aligned_cols=147 Identities=22% Similarity=0.203 Sum_probs=107.9
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|.|+++ .++++|+||+ |++||.++|+| ||||||||| .+++.++++| .++.+.+..++++.+.
T Consensus 338 ~~v~~~y~~~--~~~l~~i~~~-i~~G~~~~ivG-~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 338 RHITFEFANS--SQGVFDVSFE-AKAGQTVAIVG-PTGAGKTTL-INLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred EEEEEECCCC--CccccceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 3778999753 4699999999 99999999999 999999999 6788888887 2345556667787774
Q ss_pred ccCCCcccc----------cCCCCCchhH---HHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF----------LGPENPEEPY---LQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~----------~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+..++..+| ..++..++++ ++.+++. .+.+...++.+..||||||||++|||||+ +
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall----~ 488 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL----K 488 (585)
T ss_pred EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh----c
Confidence 333333333 1122222222 2222221 11133456678899999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|+++|||||||+||+.+++.+.+.
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~ 513 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNA 513 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHH
Confidence 8999999999999999999998764
No 170
>KOG0056|consensus
Probab=99.97 E-value=3.2e-31 Score=223.71 Aligned_cols=148 Identities=25% Similarity=0.324 Sum_probs=116.4
Q ss_pred CccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc
Q psy17517 6 QSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA 76 (163)
Q Consensus 6 ~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~ 76 (163)
-++++|.|.. ++++|+||||+ +.+|+.+|+|| |||+||||+ +++++++.+. .++++....++|+.+
T Consensus 540 fsnvtF~Y~p--~k~vl~disF~-v~pGktvAlVG-~SGaGKSTi-mRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 540 FSNVTFAYDP--GKPVLSDISFT-VQPGKTVALVG-PSGAGKSTI-MRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred EEEeEEecCC--CCceeecceEE-ecCCcEEEEEC-CCCCchhHH-HHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 4578999954 68999999999 99999999999 999999999 7888888866 467788888999998
Q ss_pred cccCCCcccc----------cCCCCCchhHHHhchhcccC----------CCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAF----------LGPENPEEPYLQGVNYNCVA----------PGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+..+++..+| ..+.+.++++.+...-..++ .....+++..|||||||||||||++ +
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti----L 690 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI----L 690 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH----h
Confidence 5555544444 24445555533332221111 2345678899999999999999999 5
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+.|.+++|||.||+||..+++.|+..
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaa 716 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAA 716 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHH
Confidence 89999999999999999999988764
No 171
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=9.1e-31 Score=204.65 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=103.5
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc---c--cc--ccc--cCHHHHHHhc-
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR---I--AT--IRS--LGLEDLRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~---~--~~--i~~--~~~~~~~~~~- 76 (163)
+++|.||+.. .+++++|+||+ |.+||+++|+| ||||||||| ++++.++.+ | +. +.+ .....+++++
T Consensus 8 ~~~~~~~~~~~~~~~l~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-lk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~ 84 (226)
T cd03234 8 DVGLKAKNWNKYARILNDVSLH-VESGQVMAILG-SSGSGKTTL-LDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84 (226)
T ss_pred cceeeeecCccccccccCceEE-EcCCeEEEEEC-CCCCCHHHH-HHHHhCccCCCCCCceEEEECCEECChHHhcccEE
Confidence 7889998642 36899999999 99999999999 999999999 677778776 5 21 212 2223445555
Q ss_pred -cccCCCcccccC---------------CCCCc--------hh-HHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 77 -LAQNQSAQAFLG---------------PENPE--------EP-YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 77 -~~q~~~~~~~~~---------------~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
++|++ .+|.. ..... +. .++.+++ ....++.+..|||||+||++|||+|
T Consensus 85 ~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 85 YVRQDD--ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL----TRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred EeCCCC--ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcc----hhhhcccccCcCHHHHHHHHHHHHH
Confidence 44443 22210 00000 01 2333344 4566788999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.+.|
T Consensus 159 ~----~~p~illlDEP~~gLD~~~~~~~~~~l 186 (226)
T cd03234 159 L----WDPKVLILDEPTSGLDSFTALNLVSTL 186 (226)
T ss_pred H----hCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 6 789999999999999999999987753
No 172
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.1e-31 Score=205.85 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=101.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHH-HHHhcc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLED-LRSMAL 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~-~~~~~~ 77 (163)
+.+|.|+. .++++++||+ |.+||+++|+| ||||||||| ++++.++.+| + ++...+..+ +++.+.
T Consensus 10 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 10 KVSAHYGK---IQALHEVSLH-INQGEIVTLIG-ANGAGKTTL-LGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred eEEEeeCC---ceeeeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 56778853 5799999999 99999999999 999999999 6778888776 2 233333333 344453
Q ss_pred ccCCCcccccC----------CC--CCc------hhHHHhc-hhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 78 AQNQSAQAFLG----------PE--NPE------EPYLQGV-NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 78 ~q~~~~~~~~~----------~~--~~~------~~~~~~~-~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
+..++..+|.. .. ... +++++.+ ++ .+..+.++.+||||||||++|||||+ .+
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l----~~~~~~~~~~LS~G~~qrl~la~al~----~~ 155 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL----HERRIQRAGTMSGGEQQMLAIGRALM----SQ 155 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHH----HHHHhCchhhCCHHHHHHHHHHHHHH----hC
Confidence 33332223311 00 000 1123333 23 34556789999999999999999996 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+++||||||++||+.++..+.+.|
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l 180 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTI 180 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHH
Confidence 9999999999999999999887653
No 173
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-31 Score=204.12 Aligned_cols=143 Identities=16% Similarity=0.101 Sum_probs=109.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc----cccc----cCHHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA----TIRS----LGLEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~----~i~~----~~~~~~~~~~~~q 79 (163)
+.+-+|++ -..+++||||+ ++.||+++++| ||||||||+ +++++.+..|. .+.. .++...|+++...
T Consensus 6 ~l~K~y~~--~v~AvrdVSF~-ae~Gei~GlLG-~NGAGKTT~-LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 6 DLTKSYGS--KVQAVRDVSFE-AEEGEITGLLG-ENGAGKTTL-LRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred ehhhhccC--HHhhhhheeEE-eccceEEEEEc-CCCCCchhH-HHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 34556764 35699999999 99999999999 999999999 78888888771 2222 2445678887333
Q ss_pred CCCcccccCC--------------------CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 80 NQSAQAFLGP--------------------ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 80 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
+.+.-+|... .++.+++.+.+++ .+.+++++..+|-||||||+||||| +++|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l----~~~~~rRv~~~S~G~kqkV~iARAl----vh~P 152 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL----LEYLDRRVGEFSTGMKQKVAIARAL----VHDP 152 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhCh----HHHHHHHHhhhchhhHHHHHHHHHH----hcCC
Confidence 3433333111 1122345666677 7888999999999999999999999 4999
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++++|||||||||..+.+++.+.+
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi 176 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFI 176 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHH
Confidence 999999999999999999988753
No 174
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=3.7e-30 Score=198.62 Aligned_cols=138 Identities=25% Similarity=0.342 Sum_probs=100.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|+.. ..++++++||+ |.+||+++|+| +|||||||| ++++.++.+| + ++...+..++++.+
T Consensus 11 ~l~~~~~~~-~~~~l~~isl~-i~~G~~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 86 (207)
T cd03369 11 NLSVRYAPD-LPPVLKNVSFK-VKAGEKIGIVG-RTGAGKSTL-ILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86 (207)
T ss_pred EEEEEeCCC-CcccccCceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 677888642 24799999999 99999999999 999999999 6778888776 1 22233444556666
Q ss_pred cccCCCcccccC---------CCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecc
Q psy17517 77 LAQNQSAQAFLG---------PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEI 147 (163)
Q Consensus 77 ~~q~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP 147 (163)
++|++ .++.. .....+.+.+.+. .+.++..|||||+||++|||+|+ .+|+++|||||
T Consensus 87 v~q~~--~~~~~tv~~~l~~~~~~~~~~~~~~l~--------~~~~~~~LS~G~~qrv~laral~----~~p~llllDEP 152 (207)
T cd03369 87 IPQDP--TLFSGTIRSNLDPFDEYSDEEIYGALR--------VSEGGLNLSQGQRQLLCLARALL----KRPRVLVLDEA 152 (207)
T ss_pred EecCC--cccCccHHHHhcccCCCCHHHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCC
Confidence 45544 23210 0001111122211 45688999999999999999996 78999999999
Q ss_pred cCCCCHHHHHHHHhhC
Q psy17517 148 DAALDNTNIGKVASYI 163 (163)
Q Consensus 148 ts~LD~~~~~~i~~~l 163 (163)
|++||+.++..+.++|
T Consensus 153 ~~~LD~~~~~~l~~~l 168 (207)
T cd03369 153 TASIDYATDALIQKTI 168 (207)
T ss_pred cccCCHHHHHHHHHHH
Confidence 9999999999887653
No 175
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.97 E-value=1e-30 Score=207.33 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=102.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc------------ccccCHHHH-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT------------IRSLGLEDL- 72 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~------------i~~~~~~~~- 72 (163)
++++.|++ ..+++|+||+ |++||+++|+| ||||||||| ++++.++.+| +. +...+..+.
T Consensus 8 ~l~~~~~~---~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 8 GLSKSYGG---GKGCRDVSFD-LYPGEVLGIVG-ESGSGKSTL-LGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eeEEEeCC---ceEeecceEE-EeCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 67888863 4699999999 99999999999 999999999 7788888776 11 222222222
Q ss_pred ---HHhc--cccCCCcccccC---------------CCC------CchhHHHhchhcccCC-CccCCCCCCCCHHHHHHH
Q psy17517 73 ---RSMA--LAQNQSAQAFLG---------------PEN------PEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVA 125 (163)
Q Consensus 73 ---~~~~--~~q~~~~~~~~~---------------~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrv 125 (163)
++.+ ++|.+...++.. ... ...++++.+++ . ...++.+..||||||||+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l----~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEI----DPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCC----ChhhhhcCchhcCHHHHHHH
Confidence 2234 556542111110 000 01124555555 3 367788999999999999
Q ss_pred HHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 126 ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 126 aiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|||||+ .+|+++||||||++||+.++..+.++
T Consensus 158 ~laral~----~~p~vlllDEP~~~LD~~~~~~l~~~ 190 (253)
T TIGR02323 158 QIARNLV----TRPRLVFMDEPTGGLDVSVQARLLDL 190 (253)
T ss_pred HHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 9999996 78999999999999999999988765
No 176
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.7e-31 Score=212.39 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=103.7
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------------ccccccCHHH---HHHh-c--cc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------------ATIRSLGLED---LRSM-A--LA 78 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------------~~i~~~~~~~---~~~~-~--~~ 78 (163)
..++++||||+ +.+||+++||| +|||||||+++.++..+..+ .++-..+.++ +|.+ + +|
T Consensus 17 ~v~av~~vs~~-i~~GE~lgiVG-ESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIf 94 (316)
T COG0444 17 VVKAVDGVSFE-LKKGEILGIVG-ESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94 (316)
T ss_pred cEEEEeceeEE-EcCCcEEEEEc-CCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEE
Confidence 46899999999 99999999999 99999999987777766633 1233444433 3333 3 89
Q ss_pred cCCCccccc--------------CCC--CC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 79 QNQSAQAFL--------------GPE--NP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 79 q~~~~~~~~--------------~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
|+|.+.+.. ... .. ..++++.+++. .++...+.||.+|||||+|||.||.||+
T Consensus 95 Q~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~-~~~~~~~~YPhelSGGMrQRV~IAmala---- 169 (316)
T COG0444 95 QDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIP-DPERRLKSYPHELSGGMRQRVMIAMALA---- 169 (316)
T ss_pred cCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCC-CHHHHHhhCCcccCCcHHHHHHHHHHHh----
Confidence 998554431 000 11 12356666661 0122668999999999999999999997
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++|.||||+|||...+.+|+++|
T Consensus 170 ~~P~LlIADEPTTALDvt~QaqIl~Ll 196 (316)
T COG0444 170 LNPKLLIADEPTTALDVTVQAQILDLL 196 (316)
T ss_pred CCCCEEEeCCCcchhhHHHHHHHHHHH
Confidence 679999999999999999999998864
No 177
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=1e-30 Score=210.57 Aligned_cols=143 Identities=20% Similarity=0.221 Sum_probs=104.7
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--------ccccccCHHHHHHhc--
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--------~~i~~~~~~~~~~~~-- 76 (163)
.+.+|.|+.+ +.++|+||||+ |++||+++|+| +|||||||| ++++.++.+. .++...+..++|+++
T Consensus 6 ~nls~~~~~~-~~~~l~~isl~-I~~Ge~~~IvG-~nGsGKSTL-l~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 6 KDLTAKYTEG-GNAVLENISFS-ISPGQRVGLLG-RTGSGKSTL-LSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEeCCC-CCcceeceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 3678899743 45799999999 99999999999 999999999 6667777654 233445556777776
Q ss_pred cccCCCcccc----------cCCCC--CchhHHHhchhcccCCCccCCCC-----------CCCCHHHHHHHHHHHHHHh
Q psy17517 77 LAQNQSAQAF----------LGPEN--PEEPYLQGVNYNCVAPGKRFQPM-----------TNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----------~~LSgGqkQrvaiAraL~~ 133 (163)
++|++ .+| +.... ...++++.+++ .+..++.+ ..||||||||++|||||+
T Consensus 82 v~q~~--~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL----~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall- 154 (275)
T cd03289 82 IPQKV--FIFSGTFRKNLDPYGKWSDEEIWKVAEEVGL----KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL- 154 (275)
T ss_pred ECCCc--ccchhhHHHHhhhccCCCHHHHHHHHHHcCC----HHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh-
Confidence 55554 232 11111 11234555555 33333434 459999999999999995
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 155 ---~~p~illlDEpts~LD~~~~~~l~~~l 181 (275)
T cd03289 155 ---SKAKILLLDEPSAHLDPITYQVIRKTL 181 (275)
T ss_pred ---cCCCEEEEECccccCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 178
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1.2e-30 Score=227.67 Aligned_cols=143 Identities=19% Similarity=0.149 Sum_probs=107.1
Q ss_pred cceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc
Q psy17517 8 AQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~ 76 (163)
+++|+|++.+ ..++|+|+||+ +++||+++|+| ||||||||| .+++.++++| .++.+.+..++++.+
T Consensus 342 ~v~f~y~~~~~~~~~~l~~vs~~-i~~G~~~aivG-~sGsGKSTl-~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 418 (555)
T TIGR01194 342 DVHMNPKAPEGSEGFALGPIDLR-IAQGDIVFIVG-ENGCGKSTL-AKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLF 418 (555)
T ss_pred EEEEEeCCCCCCcCceeccceEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhC
Confidence 6789997532 23699999999 99999999999 999999999 7788898887 255667777888887
Q ss_pred cccCCCcccccC-------CCCCch---hHHHhchhcccCCCccC------CCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy17517 77 LAQNQSAQAFLG-------PENPEE---PYLQGVNYNCVAPGKRF------QPMTNLSGGEKTVAALALLFAIHSYHPAP 140 (163)
Q Consensus 77 ~~q~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~LSgGqkQrvaiAraL~~~~~~~p~ 140 (163)
.+..++..+|.. +...++ ++++.+++ .+... .....||||||||++||||++ ++|+
T Consensus 419 ~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l----~~~~~~lp~g~~t~~~LSgGq~qRlalaRall----~~~~ 490 (555)
T TIGR01194 419 SAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEI----ADKVKIEDGGFSTTTALSTGQQKRLALICAWL----EDRP 490 (555)
T ss_pred cEEccChhhhhhhhhcccccchhHHHHHHHHHHcCC----chhhcccccccCCcccCCHHHHHHHHHHHHHH----cCCC
Confidence 444444444421 111112 24555554 22211 224789999999999999995 8999
Q ss_pred EEEeecccCCCCHHHHHHHHh
Q psy17517 141 FFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 141 lllLDEPts~LD~~~~~~i~~ 161 (163)
++|||||||+||+.+++++.+
T Consensus 491 ililDE~ts~LD~~~~~~i~~ 511 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYE 511 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHH
Confidence 999999999999999998764
No 179
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=1.2e-30 Score=205.45 Aligned_cols=140 Identities=21% Similarity=0.194 Sum_probs=98.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc--cc--c-------cccccCHHHH-HHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH--RI--A-------TIRSLGLEDL-RSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~--~~--~-------~i~~~~~~~~-~~~ 75 (163)
+.+|.|++ .++|+|+||+ |++||+++|+| ||||||||| ++++.++. .| + ++...+.... +..
T Consensus 5 ~l~~~~~~---~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 5 DLHVSVED---KEILKGVNLT-VKKGEIHAIMG-PNGSGKSTL-SKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred eEEEEECC---EEEEeccceE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 57788863 5799999999 99999999999 999999999 67777773 34 2 2223333332 222
Q ss_pred c--cccCCCcccccC-------------CC-------CC-------chhHHHhchhcccCC-CccCCCCC-CCCHHHHHH
Q psy17517 76 A--LAQNQSAQAFLG-------------PE-------NP-------EEPYLQGVNYNCVAP-GKRFQPMT-NLSGGEKTV 124 (163)
Q Consensus 76 ~--~~q~~~~~~~~~-------------~~-------~~-------~~~~~~~~~~~~~~~-~~~~~~~~-~LSgGqkQr 124 (163)
+ ++|++. ++.. .. .. ..++++.+++ . ...++++. .||||||||
T Consensus 79 i~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 79 LFLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM----DEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred eEeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCC----chhhcccccccCcCHHHHHH
Confidence 4 455542 1100 00 00 0123444454 3 34566776 599999999
Q ss_pred HHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 125 AALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 125 vaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|||||+ .+|+++||||||++||+.++..+.++|
T Consensus 153 l~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l 187 (243)
T TIGR01978 153 NEILQMAL----LEPKLAILDEIDSGLDIDALKIVAEGI 187 (243)
T ss_pred HHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 99999996 789999999999999999999988753
No 180
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=219.27 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=100.2
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHH---H-Hhc--cccCCCc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDL---R-SMA--LAQNQSA 83 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~---~-~~~--~~q~~~~ 83 (163)
..+++|+||+ |++||+++|+| ||||||||| ++++.++..| + ++...+..++ + +++ ++|++
T Consensus 41 ~~~L~~isl~-i~~Gei~~LvG-~NGsGKSTL-Lr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~-- 115 (400)
T PRK10070 41 SLGVKDASLA-IEEGEIFVIMG-LSGSGKSTM-VRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF-- 115 (400)
T ss_pred eEEEEeEEEE-EcCCCEEEEEC-CCCchHHHH-HHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC--
Confidence 4589999999 99999999999 999999999 7788888877 1 2333333332 2 345 55554
Q ss_pred ccccC----------C-----CC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEE
Q psy17517 84 QAFLG----------P-----EN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143 (163)
Q Consensus 84 ~~~~~----------~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lll 143 (163)
.+|.. . .. ...++++.+++ .+..++++.+||||||||++|||||+ .+|+++|
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL----~~~~~~~~~~LSgGq~QRv~LArAL~----~~P~iLL 187 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGL----ENYAHSYPDELSGGMRQRVGLARALA----INPDILL 187 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----ChhhhcCcccCCHHHHHHHHHHHHHh----cCCCEEE
Confidence 23311 0 00 11235666666 67889999999999999999999996 7899999
Q ss_pred eecccCCCCHHHHHHHHhhC
Q psy17517 144 LDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 144 LDEPts~LD~~~~~~i~~~l 163 (163)
|||||++||+.++.++.+.|
T Consensus 188 LDEPts~LD~~~r~~l~~~L 207 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQDEL 207 (400)
T ss_pred EECCCccCCHHHHHHHHHHH
Confidence 99999999999999988753
No 181
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=2.9e-30 Score=195.23 Aligned_cols=129 Identities=26% Similarity=0.356 Sum_probs=95.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCH----HHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGL----EDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~----~~~~~~~~~q 79 (163)
+.+|.|+.. +.++++|+||+ +++||+++|+| ||||||||| ++++.++.+| +. +.+.+. ..+++.+.+.
T Consensus 5 ~~~~~~~~~-~~~~l~~i~~~-i~~Ge~~~i~G-~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 5 NVSFSYPEQ-EQQVLKNLSLE-LKQGEKIALLG-RSGSGKSTL-LQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred EEEEEeCCC-CccceEEEEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 567888642 24699999999 99999999999 999999999 6778888776 22 222222 2345555333
Q ss_pred CCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHH
Q psy17517 80 NQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i 159 (163)
.++..++ . . .+.+.+ +..|||||+||++||||++ .+|++++|||||++||+.++..+
T Consensus 81 ~q~~~~~-~-~----tv~~~i-------------~~~LS~G~~qrv~laral~----~~p~~lllDEP~~~LD~~~~~~l 137 (178)
T cd03247 81 NQRPYLF-D-T----TLRNNL-------------GRRFSGGERQRLALARILL----QDAPIVLLDEPTVGLDPITERQL 137 (178)
T ss_pred ccCCeee-c-c----cHHHhh-------------cccCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHH
Confidence 3333333 1 1 112221 6799999999999999996 78999999999999999999988
Q ss_pred HhhC
Q psy17517 160 ASYI 163 (163)
Q Consensus 160 ~~~l 163 (163)
.+.|
T Consensus 138 ~~~l 141 (178)
T cd03247 138 LSLI 141 (178)
T ss_pred HHHH
Confidence 7653
No 182
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=211.26 Aligned_cols=145 Identities=21% Similarity=0.184 Sum_probs=102.9
Q ss_pred cceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--ccc----------CHHH
Q psy17517 8 AQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSL----------GLED 71 (163)
Q Consensus 8 ~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~----------~~~~ 71 (163)
+.++.|++.. ..++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| +.+ .+. +...
T Consensus 11 nl~~~~~~~~~~~~~il~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 87 (289)
T PRK13645 11 NVSYTYAKKTPFEFKALNNTSLT-FKKNKVTCVIG-TTGSGKSTM-IQLTNGLIISETGQTIVGDYAIPANLKKIKEVKR 87 (289)
T ss_pred EEEEEeCCCCccccceeeeeEEE-EeCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECCEEccccccccccHHH
Confidence 6778886421 13699999999 99999999999 999999999 6778888776 211 111 2234
Q ss_pred HHHhc--cccCCCccccc---------CCC---CCc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GPE---NPE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
+++.+ ++|++...++. ... ... .++++.+++ ..+..++++.+||||||||++||||
T Consensus 88 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L---~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 88 LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL---PEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---ChhHhcCChhhCCHHHHHHHHHHHH
Confidence 55555 56654222220 000 001 113333443 1246678899999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+ .+|+++||||||++||+.++..+.++
T Consensus 165 l~----~~p~lLlLDEPt~~LD~~~~~~l~~~ 192 (289)
T PRK13645 165 IA----MDGNTLVLDEPTGGLDPKGEEDFINL 192 (289)
T ss_pred HH----hCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 96 78999999999999999999988765
No 183
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.7e-30 Score=194.72 Aligned_cols=128 Identities=23% Similarity=0.247 Sum_probs=94.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccC--HHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLG--LEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~--~~~~~~~~ 76 (163)
+.+|.|++ .++++++||+ +++||+++|+| ||||||||| ++++.++.++ + ++...+ ...+++.+
T Consensus 5 ~l~~~~~~---~~~l~~i~~~-i~~G~~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 5 NVSKRYGQ---KTVLNDVSLN-IEAGEIVALLG-PSGSGKSTL-LRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred EEEEEECC---eEEEeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 56778863 5799999999 99999999999 999999999 6777888776 1 222222 23444555
Q ss_pred cccCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 77 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 77 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
.+..++..++.. ..+.+.+.+ . ||||||||++|||||+ .+|++++|||||++||+.++
T Consensus 79 ~~~~q~~~~~~~-----~t~~~~l~~----~---------lS~G~~qr~~la~al~----~~p~llilDEP~~~LD~~~~ 136 (178)
T cd03229 79 GMVFQDFALFPH-----LTVLENIAL----G---------LSGGQQQRVALARALA----MDPDVLLLDEPTSALDPITR 136 (178)
T ss_pred EEEecCCccCCC-----CCHHHheee----c---------CCHHHHHHHHHHHHHH----CCCCEEEEeCCcccCCHHHH
Confidence 333333223311 122333333 1 9999999999999996 78999999999999999999
Q ss_pred HHHHhhC
Q psy17517 157 GKVASYI 163 (163)
Q Consensus 157 ~~i~~~l 163 (163)
..+.++|
T Consensus 137 ~~l~~~l 143 (178)
T cd03229 137 REVRALL 143 (178)
T ss_pred HHHHHHH
Confidence 9987753
No 184
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.97 E-value=1.4e-30 Score=207.23 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=104.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|++ .++++|+||+ +.+||+++|+| +|||||||| ++++.++.+| + ++...+...+++.+
T Consensus 6 ~l~~~~~~---~~il~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 6 RVSWSAGG---RLIVDGVDVT-APPGSLTGLLG-PNGSGKSTL-LRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred eEEEEECC---EEEEeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 56788863 5799999999 99999999999 999999999 6778888776 1 23333444445555
Q ss_pred cccCCCc---------ccccCCC-------CC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 77 LAQNQSA---------QAFLGPE-------NP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 77 ~~q~~~~---------~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
++|++.. ..+.... .. ..++++.+++ .+..++++.+||||||||++|||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~la~al~-- 153 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL----SHLADRDMSTLSGGERQRVHVARALA-- 153 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCc----HhhhcCCcccCCHHHHHHHHHHHHHh--
Confidence 4555411 0000000 00 0124455555 56778899999999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 154 --~~p~llllDEPt~~LD~~~~~~l~~~l 180 (256)
T TIGR03873 154 --QEPKLLLLDEPTNHLDVRAQLETLALV 180 (256)
T ss_pred --cCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 185
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.2e-30 Score=195.18 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=92.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~~~ 78 (163)
+.++.|++ .++++++||+ +.+||+++|+| ||||||||| ++++.++.+| + ++.... .++++.+.+
T Consensus 5 ~l~~~~~~---~~~l~~~~~~-i~~Ge~~~i~G-~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 5 NLSKRYGK---KTALDDISLT-VEKGEIYGLLG-PNGAGKTTL-IKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred EEEEEECC---eeeeeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 56778863 4699999999 99999999999 999999999 6778888766 2 222222 344455533
Q ss_pred cCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 79 QNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 79 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
..++..++... .+.+.+. |||||+||++|||||+ .+|++++|||||++||+.++..
T Consensus 78 ~~q~~~~~~~~-----tv~~~~~---------------LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~ 133 (173)
T cd03230 78 LPEEPSLYENL-----TVRENLK---------------LSGGMKQRLALAQALL----HDPELLILDEPTSGLDPESRRE 133 (173)
T ss_pred EecCCccccCC-----cHHHHhh---------------cCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHH
Confidence 33332333211 1112210 9999999999999996 7899999999999999999999
Q ss_pred HHhhC
Q psy17517 159 VASYI 163 (163)
Q Consensus 159 i~~~l 163 (163)
+.++|
T Consensus 134 l~~~l 138 (173)
T cd03230 134 FWELL 138 (173)
T ss_pred HHHHH
Confidence 88753
No 186
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.9e-31 Score=202.24 Aligned_cols=136 Identities=25% Similarity=0.266 Sum_probs=99.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|++ .. .|+||+ |.+||+++|+| ||||||||| ++++.++.+| + ++...+. .++.+
T Consensus 5 ~l~~~~~~---~~--~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 5 KIRFSYGE---QP--MHFDLT-FAQGEITAIVG-PSGSGKSTL-LNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred eEEEEeCC---Ee--cceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 56788853 22 299999 99999999999 999999999 6778888776 1 2222221 23344
Q ss_pred cccCCCccccc----------CCC-C---------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GPE-N---------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+|. ... . ...++++.+++ .+..++++.+||||||||++|||||+
T Consensus 75 ~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~ia~al~---- 144 (211)
T cd03298 75 LFQEN--NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGL----AGLEKRLPGELSGGERQRVALARVLV---- 144 (211)
T ss_pred Eeccc--ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCC----HHHHhCCcccCCHHHHHHHHHHHHHh----
Confidence 55554 2221 111 0 01124555565 56678889999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l 171 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLV 171 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 187
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=3.8e-30 Score=244.25 Aligned_cols=148 Identities=22% Similarity=0.272 Sum_probs=113.3
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|+|+++ ..++|+||||+ |++||.+|||| +|||||||| ..++.++++| .++++.+..++|+++.
T Consensus 1238 ~nVsf~Y~~~-~~~vL~~isl~-I~~GekvaIVG-~SGSGKSTL-~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1238 EDVHLRYRPG-LPPVLHGLSFF-VSPSEKVGVVG-RTGAGKSSM-LNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred EEEEEEECCC-CCcccccceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 4779999643 35799999999 99999999999 999999999 6788889887 3567778889999984
Q ss_pred ccCCCccccc---------CCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 78 AQNQSAQAFL---------GPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 78 ~q~~~~~~~~---------~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
+..|+..+|. ..+..+++ +++.+++. .+.+....+.+.+||||||||++||||| +++
T Consensus 1314 iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL----Lr~ 1389 (1495)
T PLN03232 1314 IIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL----LRR 1389 (1495)
T ss_pred EECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH----HhC
Confidence 4444444552 11222333 34444331 1123345567889999999999999999 488
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+++|||||||+||+++.+.|++.
T Consensus 1390 ~~ILILDEATSaLD~~Te~~Iq~~ 1413 (1495)
T PLN03232 1390 SKILVLDEATASVDVRTDSLIQRT 1413 (1495)
T ss_pred CCEEEEECCcccCCHHHHHHHHHH
Confidence 999999999999999999998765
No 188
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=6.5e-31 Score=195.40 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=108.7
Q ss_pred cCccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc-----------ccc----ccCH
Q psy17517 5 NQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-----------TIR----SLGL 69 (163)
Q Consensus 5 ~~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-----------~i~----~~~~ 69 (163)
.-++.+|.|.. ..+|-||+|+ -+.||.+.++| |||+||||| ++.+..+.-|. +.+ +...
T Consensus 4 rv~~in~~yg~---~q~lfdi~l~-~~~getlvllg-psgagkssl-lr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 4 QLNGINCFYGA---HQALFDITLD-CPEGETLVLLG-PSGAGKSSL-LRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEccccccccc---chheeeeeec-CCCCCEEEEEC-CCCCchHHH-HHHHHHHhCCCCCeEEecccccccccCccHHHH
Confidence 34578899965 5799999999 99999999999 999999999 67777776551 222 2233
Q ss_pred HHHHHhc--cccCCCcccccC----------------CC-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHH
Q psy17517 70 EDLRSMA--LAQNQSAQAFLG----------------PE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAA 126 (163)
Q Consensus 70 ~~~~~~~--~~q~~~~~~~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrva 126 (163)
.++|+.+ +||.. .++.. .. .+..+++.++.+ .+.+|+.|..|||||+||||
T Consensus 78 ~~lr~~vgmvfqqy--~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl----~~~adr~plhlsggqqqrva 151 (242)
T COG4161 78 RDLRRNVGMVFQQY--NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRL----KPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHHhhhhhhhhh--ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcc----ccccccCceecccchhhhHH
Confidence 4677776 55544 33311 00 011235666666 88999999999999999999
Q ss_pred HHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 127 LALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 127 iAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|||||+ .+|+++++||||++|||+-..++.++
T Consensus 152 iaralm----mkpqvllfdeptaaldpeitaqvv~i 183 (242)
T COG4161 152 IARALM----MEPQVLLFDEPTAALDPEITAQIVSI 183 (242)
T ss_pred HHHHHh----cCCcEEeecCcccccCHHHHHHHHHH
Confidence 999997 57999999999999999998887665
No 189
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=202.71 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=109.6
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCH-HHHHHhc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGL-EDLRSMA 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~-~~~~~~~ 76 (163)
.+++..|. ++++|+|||++ |++||.++|+| ||||||||| ++++.+.+.| ......+. .++|++|
T Consensus 35 ~~v~v~r~---gk~iL~~isW~-V~~ge~W~I~G-~NGsGKTTL-L~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 35 KNVSVRRN---GKKILGDLSWQ-VNPGEHWAIVG-PNGAGKTTL-LSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred cceEEEEC---CEeecccccee-ecCCCcEEEEC-CCCCCHHHH-HHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 46777885 47899999999 99999999999 999999999 7888888877 12223333 6888888
Q ss_pred cccCCCc------------ccc---c---C-CC-CCc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 77 LAQNQSA------------QAF---L---G-PE-NPE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 77 ~~q~~~~------------~~~---~---~-~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
++..++- .+. + + .. ... ..+++.+++ .+..+++..+||-||||||.|||
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~----~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA----KHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcch----hhhccCchhhcCHhHHHHHHHHH
Confidence 5554411 110 0 1 11 111 125666676 78999999999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
||+ ++|++||||||+++||...+.++.+.
T Consensus 185 ALv----~~P~LLiLDEP~~GLDl~~re~ll~~ 213 (257)
T COG1119 185 ALV----KDPELLILDEPAQGLDLIAREQLLNR 213 (257)
T ss_pred HHh----cCCCEEEecCccccCChHHHHHHHHH
Confidence 995 88999999999999999999887764
No 190
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=205.52 Aligned_cols=146 Identities=21% Similarity=0.228 Sum_probs=104.3
Q ss_pred CccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc---c--c-------cccccCHHHHH
Q psy17517 6 QSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR---I--A-------TIRSLGLEDLR 73 (163)
Q Consensus 6 ~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~---~--~-------~i~~~~~~~~~ 73 (163)
-.++++.|++ .++++|+||+ +.+||+++|+| ||||||||| ++++.++.. | + ++...+...++
T Consensus 5 ~~~l~~~~~~---~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 5 TTNLNLFYGK---KQALFDINMQ-IEQNKITALIG-ASGCGKSTF-LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred eeeeEEEECC---EeeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3467888963 5799999999 99999999999 999999999 677777753 2 2 23333444556
Q ss_pred Hhc--cccCCCccccc---------C--CC----CCc------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 74 SMA--LAQNQSAQAFL---------G--PE----NPE------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 74 ~~~--~~q~~~~~~~~---------~--~~----~~~------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
+.+ ++|.+ .+|. . .. ... ..+++.+++.....+..++++.+||||||||++||||
T Consensus 79 ~~i~~~~q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 79 KNVGMVFQQP--NVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hhEEEEecCC--ccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 666 45544 2321 0 00 000 1234555541111134577889999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ .+|++++|||||++||+.++..+.+.|
T Consensus 157 l~----~~p~lllLDEP~~~LD~~~~~~l~~~l 185 (246)
T PRK14269 157 LA----IKPKLLLLDEPTSALDPISSGVIEELL 185 (246)
T ss_pred Hh----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 96 789999999999999999999887653
No 191
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=204.51 Aligned_cols=144 Identities=18% Similarity=0.204 Sum_probs=101.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------c-------ccc--ccCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------A-------TIR--SLGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~-------~i~--~~~~~~ 71 (163)
+.++.|+. .++++|+||+ |.+||+++|+| ||||||||| ++++.++..| + ++. ..+..+
T Consensus 9 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 9 NLRVYYGS---NHVIKGVDLK-IPQNGVFALMG-PSGCGKSTL-LRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeCC---eeeeecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 56788863 5799999999 99999999999 999999999 6677777653 1 122 122334
Q ss_pred HHHhc--cccCCCcccccC------------CCC---Cc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFLG------------PEN---PE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAAL 127 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~~------------~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvai 127 (163)
+++++ ++|++ .+|.. ... .. .++++.+++........++++.+||||||||++|
T Consensus 83 ~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 83 VRREVGMVFQYP--NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HhhceeEEecCC--ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 55555 45544 22210 000 01 1233344431111234678899999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 161 aral~----~~p~llllDEP~~~LD~~~~~~l~~~l 192 (253)
T PRK14267 161 ARALA----MKPKILLMDEPTANIDPVGTAKIEELL 192 (253)
T ss_pred HHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 99996 789999999999999999999887753
No 192
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=205.97 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=99.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--c-------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--A-------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~-------~i~~--~~~~~ 71 (163)
+++|.|+. .++++++||+ |.+||+++|+| ||||||||| ++++.|+.. + + ++.. .+...
T Consensus 11 ~l~~~~~~---~~il~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 11 GLSFFYGD---FQALHDISLE-FEQNQVTALIG-PSGCGKSTF-LRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred eeEEEECC---eeeecceeEE-EeCCCEEEEEC-CCCCCHHHH-HHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 67888853 4799999999 99999999999 999999999 666777642 2 2 2221 12234
Q ss_pred HHHhc--cccCCCccccc---------C--CC---CC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G--PE---NP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~--~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .+|. . .. .. .+++++.+++........++++.+||||||||++|||
T Consensus 85 ~~~~i~~v~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 85 LRRRVGMVFQKP--NPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HhhcEEEEecCC--CCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 45555 45544 2221 0 00 00 0112333443100012457789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.++|
T Consensus 163 al~----~~p~llllDEPt~~LD~~~~~~l~~~l 192 (253)
T PRK14242 163 ALA----VEPEVLLMDEPASALDPIATQKIEELI 192 (253)
T ss_pred HHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 193
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2e-31 Score=203.24 Aligned_cols=140 Identities=20% Similarity=0.203 Sum_probs=111.5
Q ss_pred ceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHh-ccc
Q psy17517 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSM-ALA 78 (163)
Q Consensus 9 ~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~-~~~ 78 (163)
...+|. +++++++|||+ +.+||+|+++| |||+||||. .-|+.|+..| .+++..++....+. +.|
T Consensus 10 l~K~y~---kr~Vv~~Vsl~-v~~GEiVGLLG-PNGAGKTT~-Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 10 LAKSYK---KRKVVNDVSLE-VNSGEIVGLLG-PNGAGKTTT-FYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred hhHhhC---CeeeeeeeeEE-EcCCcEEEEEC-CCCCCceeE-EEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence 344664 47899999999 99999999999 999999998 6778888877 46777887654333 466
Q ss_pred cCCCcccccCC------------CC---C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 79 QNQSAQAFLGP------------EN---P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 79 q~~~~~~~~~~------------~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
..|+..+|-.+ .. . .+.+++.+.+ .+.++++..+||||||+|+.||||||
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i----~hlr~~~a~sLSGGERRR~EIARaLa---- 155 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI----THLRDSKAYSLSGGERRRVEIARALA---- 155 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch----HHHhcCcccccccchHHHHHHHHHHh----
Confidence 66666666211 00 0 1236677777 78899999999999999999999998
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|++++||||++|+||....+|.++
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~i 181 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRI 181 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHH
Confidence 57999999999999999999988765
No 194
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=2.8e-30 Score=205.49 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=102.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc----------------
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL---------------- 67 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~---------------- 67 (163)
+++|.|++ +++++|+||+ |++||+++|+| +|||||||| ++++.++.+| +. +.+.
T Consensus 10 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 10 DLHKRYGE---HEVLKGVSLQ-ANAGDVISIIG-SSGSGKSTF-LRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred eeEEEECC---EEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 67888863 5799999999 99999999999 999999999 6778888766 21 1111
Q ss_pred --CHHHHHHhc--cccCCCccccc----------CC----CC-------CchhHHHhchhcccCCCc-cCCCCCCCCHHH
Q psy17517 68 --GLEDLRSMA--LAQNQSAQAFL----------GP----EN-------PEEPYLQGVNYNCVAPGK-RFQPMTNLSGGE 121 (163)
Q Consensus 68 --~~~~~~~~~--~~q~~~~~~~~----------~~----~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq 121 (163)
....+++++ ++|++ .++. .. .. ...++++.+++ .+. .++++.+|||||
T Consensus 84 ~~~~~~~~~~i~~v~q~~--~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI----DERAQGKYPVHLSGGQ 157 (257)
T ss_pred chHHHHHhhceEEEecCc--ccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----ChhhhhCCcccCCHHH
Confidence 122445555 45544 2221 00 00 01234566666 444 377899999999
Q ss_pred HHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 122 KTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 122 kQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||++|||||+ .+|+++||||||++||+.++..+.++|
T Consensus 158 ~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l 195 (257)
T PRK10619 158 QQRVSIARALA----MEPEVLLFDEPTSALDPELVGEVLRIM 195 (257)
T ss_pred HHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 99999999996 789999999999999999999887753
No 195
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=223.29 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=108.6
Q ss_pred ccccCccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc------------ccccccCH
Q psy17517 2 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI------------ATIRSLGL 69 (163)
Q Consensus 2 ~~~~~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~------------~~i~~~~~ 69 (163)
|+.....+.|...+. ..++++||||+ +.+||+++||| +|||||||+++.+++.+... .++..++.
T Consensus 6 L~V~nL~v~~~~~~~-~~~~v~~vsf~-v~~GE~lgIvG-ESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 6 LEVENLTVEFATDGG-RVPAVRDVSFE-VEPGEILGIVG-ESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred EEEeceEEEEecCCc-ceeeeecceEE-ecCCcEEEEEc-CCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 344455566655422 34799999999 99999999999 99999999977766666644 13334444
Q ss_pred HHH---HHh-c--cccCCCccccc--------------CCC-------CCchhHHHhchhcccCCCcc--CCCCCCCCHH
Q psy17517 70 EDL---RSM-A--LAQNQSAQAFL--------------GPE-------NPEEPYLQGVNYNCVAPGKR--FQPMTNLSGG 120 (163)
Q Consensus 70 ~~~---~~~-~--~~q~~~~~~~~--------------~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~LSgG 120 (163)
+++ |.+ + +||+|...+-. ... .+..++++.+++ .+.. +++|++||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl----~~~~~~~~yPheLSGG 158 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGL----PDPERRDRYPHQLSGG 158 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCC----CChhhhccCCcccCch
Confidence 333 322 3 89988433321 000 011235666666 3333 5699999999
Q ss_pred HHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 121 EKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 121 qkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||||.||+||+ .+|++||+||||.+||+..+.+|+++|
T Consensus 159 ~rQRv~iAmALa----~~P~LLIaDEPTTaLDvt~q~qIL~ll 197 (539)
T COG1123 159 MRQRVMIAMALA----LKPKLLIADEPTTALDVTTQAQILDLL 197 (539)
T ss_pred HHHHHHHHHHHh----CCCCEEEECCCccccCHHHHHHHHHHH
Confidence 999999999997 679999999999999999999998864
No 196
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3e-30 Score=200.45 Aligned_cols=142 Identities=27% Similarity=0.283 Sum_probs=101.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCH--HHHHHhccccCC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGL--EDLRSMALAQNQ 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~--~~~~~~~~~q~~ 81 (163)
+.++.|++ .++++++||+ +.+||+++|+| +|||||||| ++++.++.+| +. +.+.+. ...++.+.+..+
T Consensus 16 ~l~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q 89 (214)
T PRK13543 16 ALAFSRNE---EPVFGPLDFH-VDAGEALLVQG-DNGAGKTTL-LRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89 (214)
T ss_pred eEEEecCC---ceeeecceEE-ECCCCEEEEEc-CCCCCHHHH-HHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence 56778853 4699999999 99999999999 999999999 6778888876 21 221111 122333433322
Q ss_pred CcccccC------------C-CCCc----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 82 SAQAFLG------------P-ENPE----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 82 ~~~~~~~------------~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
...++.. . .... ..+++.+++ .+..++++..||||||||++|||+++ .+|+++||
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~----~~p~llll 161 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGL----AGYEDTLVRQLSAGQKKRLALARLWL----SPAPLWLL 161 (214)
T ss_pred CcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCC----hhhccCChhhCCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 2222210 0 0111 224455555 56678899999999999999999995 78999999
Q ss_pred ecccCCCCHHHHHHHHhhC
Q psy17517 145 DEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~l 163 (163)
||||++||+.++..+.+.|
T Consensus 162 DEPt~~LD~~~~~~l~~~l 180 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMI 180 (214)
T ss_pred eCCcccCCHHHHHHHHHHH
Confidence 9999999999999887753
No 197
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=3.8e-30 Score=192.41 Aligned_cols=112 Identities=23% Similarity=0.279 Sum_probs=85.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc-------cccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI-------RSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i-------~~~~~~~~~~~~~~ 78 (163)
+.++.|++ .++++++||+ +++||+++|+| ||||||||| ++++.++.+| +.+ ...+..+.+
T Consensus 5 ~l~~~~~~---~~vl~~i~~~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~----- 73 (163)
T cd03216 5 GITKRFGG---VKALDGVSLS-VRRGEVHALLG-ENGAGKSTL-MKILSGLYKPDSGEILVDGKEVSFASPRDAR----- 73 (163)
T ss_pred EEEEEECC---eEEEeeeEEE-EeCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEECCEECCcCCHHHHH-----
Confidence 67888964 4799999999 99999999999 999999999 7788888876 111 111111100
Q ss_pred cCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 79 QNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 79 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
...+++ +.+|||||+||+++||||+ .+|++++|||||++||+.+++.
T Consensus 74 ------------------~~~i~~-----------~~qLS~G~~qrl~laral~----~~p~illlDEP~~~LD~~~~~~ 120 (163)
T cd03216 74 ------------------RAGIAM-----------VYQLSVGERQMVEIARALA----RNARLLILDEPTAALTPAEVER 120 (163)
T ss_pred ------------------hcCeEE-----------EEecCHHHHHHHHHHHHHh----cCCCEEEEECCCcCCCHHHHHH
Confidence 011111 1119999999999999996 7899999999999999999999
Q ss_pred HHhhC
Q psy17517 159 VASYI 163 (163)
Q Consensus 159 i~~~l 163 (163)
+.+.|
T Consensus 121 l~~~l 125 (163)
T cd03216 121 LFKVI 125 (163)
T ss_pred HHHHH
Confidence 87753
No 198
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=2.2e-30 Score=201.70 Aligned_cols=143 Identities=22% Similarity=0.239 Sum_probs=104.2
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH---HHHHH
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL---EDLRS 74 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~---~~~~~ 74 (163)
+.++.|+... ...+++|+||+ +.+||+++|+| +|||||||| ++++.++.+| + ++...+. ..+++
T Consensus 6 ~l~~~~~~~~~~~~il~~vs~~-i~~G~~~~I~G-~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (220)
T TIGR02982 6 NLNHYYGHGSLRKQVLFDINLE-INPGEIVILTG-PSGSGKTTL-LTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRR 82 (220)
T ss_pred EEEEEccCCCcceeEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHh
Confidence 5677886421 25799999999 99999999999 999999999 6777888766 2 1222221 12345
Q ss_pred hc--cccCCCccccc--------------CCCC-------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 75 MA--LAQNQSAQAFL--------------GPEN-------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 75 ~~--~~q~~~~~~~~--------------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
.+ ++|++ .+|. .... ...++++.+++ .+..++.+..||+|||||++|||+|
T Consensus 83 ~i~~~~q~~--~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 83 NIGYIFQAH--NLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGL----GDHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred heEEEcCCh--hhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC----hhhhhcChhhCCHHHHHHHHHHHHH
Confidence 55 45544 2221 0000 01234556666 6677889999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ ++|++++|||||++||+.++..+.+.|
T Consensus 157 ~----~~p~illlDEP~~~LD~~~~~~l~~~l 184 (220)
T TIGR02982 157 V----HRPKLVLADEPTAALDSKSGRDVVELM 184 (220)
T ss_pred h----cCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 6 789999999999999999998887653
No 199
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.6e-30 Score=191.34 Aligned_cols=126 Identities=27% Similarity=0.410 Sum_probs=93.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~~~ 78 (163)
+.++.|++. ..++++++||+ +++||+++|+| ||||||||| ++++.++.+| + ++...+...+++++.+
T Consensus 5 ~l~~~~~~~-~~~~l~~i~~~-i~~G~~~~l~G-~nGsGKstL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 5 NVSFSYPGR-PKPVLKDVSLT-IKPGEKVAIVG-PSGSGKSTL-LKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred EEEEEcCCC-CcccccceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 567888642 23799999999 99999999999 999999999 6778888776 1 2222333444555543
Q ss_pred cCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 79 QNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 79 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
..++..++ . . .+.+.+ ||+|||||++|||+|+ .+|++++|||||++||+.++.+
T Consensus 81 ~~~~~~~~-~-~----t~~e~l----------------LS~G~~~rl~la~al~----~~p~llllDEP~~gLD~~~~~~ 134 (171)
T cd03228 81 VPQDPFLF-S-G----TIRENI----------------LSGGQRQRIAIARALL----RDPPILILDEATSALDPETEAL 134 (171)
T ss_pred EcCCchhc-c-c----hHHHHh----------------hCHHHHHHHHHHHHHh----cCCCEEEEECCCcCCCHHHHHH
Confidence 33332332 1 1 112221 9999999999999996 7899999999999999999998
Q ss_pred HHhhC
Q psy17517 159 VASYI 163 (163)
Q Consensus 159 i~~~l 163 (163)
+.++|
T Consensus 135 l~~~l 139 (171)
T cd03228 135 ILEAL 139 (171)
T ss_pred HHHHH
Confidence 87753
No 200
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-30 Score=207.37 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=101.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--ccc--cc-------cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--ATI--RS-------LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~i--~~-------~~~~~ 71 (163)
++++.|+. ..+|+|+||+ |.+||+++|+| ||||||||| ++++.++.+ | +.+ .+ .+..+
T Consensus 18 nl~~~~~~---~~il~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 18 NVTISYGT---FEAVKNVFCD-IPRGKVTALIG-PSGCGKSTV-LRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred eEEEEECC---EEEEcceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence 56788863 5799999999 99999999999 999999999 677777754 2 211 11 22345
Q ss_pred HHHhc--cccCCCccccc---------CC--C---CC-c---hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GP--E---NP-E---EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~--~---~~-~---~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
+++.+ ++|++ .+|. .. . .. . ..+++.+++.....+..++++.+||||||||++|||||
T Consensus 92 ~~~~i~~v~q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral 169 (269)
T PRK14259 92 VRRRIGMVFQQP--NPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI 169 (269)
T ss_pred HhhceEEEccCC--ccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHH
Confidence 55555 55554 2221 00 0 00 0 11334444311113456788999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.++|
T Consensus 170 ~----~~p~lllLDEPt~gLD~~~~~~l~~~l 197 (269)
T PRK14259 170 A----IEPEVILMDEPCSALDPISTLKIEETM 197 (269)
T ss_pred h----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 6 789999999999999999999887753
No 201
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=207.07 Aligned_cols=143 Identities=19% Similarity=0.255 Sum_probs=103.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHHH-HHH-hc--ccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLED-LRS-MA--LAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~~-~~~-~~--~~q 79 (163)
++++.|++ ++++++|+||+ |++||+++|+| ||||||||| ++++.++.+| +. +.+.+... .++ .+ ++|
T Consensus 11 ~l~~~~~~--~~~il~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 11 DVTVTWRN--GHTALRDASFT-VPGGSIAALVG-VNGSGKSTL-FKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEecC--CcEEEEeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 67788863 35799999999 99999999999 999999999 6778888776 22 22322222 222 24 555
Q ss_pred CCCc----------ccccC-CC---------CC----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 80 NQSA----------QAFLG-PE---------NP----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 80 ~~~~----------~~~~~-~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
++.. .++.. .. .. ..++++.+++ .+..++++.+||||||||++|||||+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgG~~qrv~laraL~--- 158 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDM----VEFRHRQIGELSGGQKKRVFLARAIA--- 158 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCC----hhHhcCCcccCCHHHHHHHHHHHHHh---
Confidence 5421 00000 00 00 1124455565 56678899999999999999999996
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 159 -~~p~llllDEPt~~LD~~~~~~l~~~L 185 (272)
T PRK15056 159 -QQGQVILLDEPFTGVDVKTEARIISLL 185 (272)
T ss_pred -cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 202
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.97 E-value=2.7e-30 Score=206.12 Aligned_cols=140 Identities=21% Similarity=0.171 Sum_probs=102.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc-----cc--ccc----------CHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-----TI--RSL----------GLE 70 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-----~i--~~~----------~~~ 70 (163)
++++.|++ .++++++||+ +.+||+++|+| ||||||||| ++++.|+..|. .+ .+. ...
T Consensus 9 nl~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 9 KLAKTFNQ---HQALHAVDLN-IHHGEMVALLG-PSGSGKSTL-LRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred eEEEEeCC---eEEEecceEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 56788863 5799999999 99999999999 999999999 67778887642 21 111 122
Q ss_pred HHHHhc--cccCCCccccc----------CCC--------------C----CchhHHHhchhcccCCCccCCCCCCCCHH
Q psy17517 71 DLRSMA--LAQNQSAQAFL----------GPE--------------N----PEEPYLQGVNYNCVAPGKRFQPMTNLSGG 120 (163)
Q Consensus 71 ~~~~~~--~~q~~~~~~~~----------~~~--------------~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgG 120 (163)
.+++++ ++|++ .++. ... . ...++++.+++ .+..++.+.+||||
T Consensus 83 ~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G 156 (262)
T PRK09984 83 KSRANTGYIFQQF--NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGM----VHFAHQRVSTLSGG 156 (262)
T ss_pred HHHhheEEEcccc--ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCC----HHHHhCCccccCHH
Confidence 344455 55554 2221 100 0 01224555555 55678899999999
Q ss_pred HHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 121 EKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 121 qkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||++|||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 157 ~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l 195 (262)
T PRK09984 157 QQQRVAIARALM----QQAKVILADEPIASLDPESARIVMDTL 195 (262)
T ss_pred HHHHHHHHHHHh----cCCCEEEecCccccCCHHHHHHHHHHH
Confidence 999999999996 789999999999999999999887753
No 203
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=4.9e-30 Score=221.83 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=105.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHH-hc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRS-MA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~-~~- 76 (163)
+.+|.|++ .++|+|+||+ |++||+++|+| ||||||||| ++++.|+..| + ++...+..++++ .+
T Consensus 16 ~l~~~~~~---~~il~~vsl~-i~~Ge~~~liG-~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 16 SISKQYSG---VEVLKGIDFT-LHAGEVHALLG-GNGAGKSTL-MKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeCC---ceeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 67788853 5799999999 99999999999 999999999 6778888766 2 222333333333 34
Q ss_pred -cccCCCccccc----------CCCC------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 77 -LAQNQSAQAFL----------GPEN------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 77 -~~q~~~~~~~~----------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
++|++ .++. .... ...++++.+++ .+..++++.+||||||||++|||||+ .+|
T Consensus 90 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~la~aL~----~~p 159 (510)
T PRK15439 90 LVPQEP--LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGC----QLDLDSSAGSLEVADRQIVEILRGLM----RDS 159 (510)
T ss_pred EEeccC--ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCC----CccccCChhhCCHHHHHHHHHHHHHH----cCC
Confidence 55554 2221 1111 11235666666 66778999999999999999999996 789
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||++||+.++..+.++|
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l 183 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRI 183 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH
Confidence 999999999999999999988753
No 204
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=8e-30 Score=242.99 Aligned_cols=148 Identities=22% Similarity=0.280 Sum_probs=113.9
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|+|+++ ..++|+||||+ |++||.+|||| +|||||||| .+++.++++| .++++.+.+++|+++.
T Consensus 1241 ~nVsf~Y~~~-~~~VL~~is~~-I~~GekVaIVG-rSGSGKSTL-l~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1241 EDVVLRYRPE-LPPVLHGLSFE-ISPSEKVGIVG-RTGAGKSSM-LNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred EEEEEEeCCC-CCceecceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 4779999643 35799999999 99999999999 999999999 7788999887 3677888999999984
Q ss_pred ccCCCccccc---------CCCCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 78 AQNQSAQAFL---------GPENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 78 ~q~~~~~~~~---------~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
+..|+..+|. ..+..+++ +++.+++. .+.+....+.+.+||||||||++||||| +++
T Consensus 1317 iVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL----Lr~ 1392 (1622)
T PLN03130 1317 IIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL----LRR 1392 (1622)
T ss_pred EECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH----HcC
Confidence 4444434542 11222333 34444331 1223445567789999999999999999 589
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|++||||||||+||.++...|++.
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~ 1416 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKT 1416 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH
Confidence 999999999999999999988765
No 205
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.96 E-value=1.7e-30 Score=203.33 Aligned_cols=135 Identities=21% Similarity=0.138 Sum_probs=94.7
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--cccCHHHHHHhccccCC----Cccccc--
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSLGLEDLRSMALAQNQ----SAQAFL-- 87 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~~~~~~~~~~~~q~~----~~~~~~-- 87 (163)
+.++++|+||+ |++||+++|+| ||||||||| ++++.++.+| +++ .+.+.........++.. ++..+.
T Consensus 34 ~~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~ 110 (224)
T cd03220 34 EFWALKDVSFE-VPRGERIGLIG-RNGAGKSTL-LRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGR 110 (224)
T ss_pred CeEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHH
Confidence 36799999999 99999999999 999999999 6778888766 222 22211111111222211 111110
Q ss_pred --CCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHH
Q psy17517 88 --GPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVA 160 (163)
Q Consensus 88 --~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~ 160 (163)
.... ...++++.+++ .+..++.+.+||||||||++|||+|+ ++|+++||||||++||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~laral~----~~p~llllDEP~~gLD~~~~~~~~ 182 (224)
T cd03220 111 LLGLSRKEIDEKIDEIIEFSEL----GDFIDLPVKTYSSGMKARLAFAIATA----LEPDILLIDEVLAVGDAAFQEKCQ 182 (224)
T ss_pred HcCCCHHHHHHHHHHHHHHcCC----hhhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHH
Confidence 1010 01224445555 66778889999999999999999996 789999999999999999999887
Q ss_pred hhC
Q psy17517 161 SYI 163 (163)
Q Consensus 161 ~~l 163 (163)
+.|
T Consensus 183 ~~l 185 (224)
T cd03220 183 RRL 185 (224)
T ss_pred HHH
Confidence 653
No 206
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.5e-30 Score=222.59 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=104.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHH-Hhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLR-SMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~-~~~- 76 (163)
+.++.|++ .++++|+||+ |++||+++|+| ||||||||| ++++.++..| + ++...+....+ +++
T Consensus 10 ~l~~~~~~---~~il~~vs~~-i~~Ge~~~liG-~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 10 GIGKSFGP---VHALKSVNLT-VYPGEIHALLG-ENGAGKSTL-MKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eeEEEcCC---eEEeeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 67788853 5799999999 99999999999 999999999 6778888766 2 23333333322 334
Q ss_pred -cccCCCcccc----------cCCC------C-----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHH
Q psy17517 77 -LAQNQSAQAF----------LGPE------N-----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128 (163)
Q Consensus 77 -~~q~~~~~~~----------~~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiA 128 (163)
++|++. ++ +... . ...++++.+++ .+..++++.+|||||||||+||
T Consensus 84 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 84 IIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL----KVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred EEeeccc--ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC----CCCcccchhhCCHHHHHHHHHH
Confidence 555541 11 1100 0 00124555666 6678899999999999999999
Q ss_pred HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 129 LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 129 raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||+ .+|+++||||||++||+.++..+.++|
T Consensus 158 ~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (510)
T PRK09700 158 KTLM----LDAKVIIMDEPTSSLTNKEVDYLFLIM 188 (510)
T ss_pred HHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 9996 789999999999999999999988753
No 207
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.96 E-value=1.1e-29 Score=203.60 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=103.8
Q ss_pred ccceeeCCCC------CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH--
Q psy17517 7 SAQAFLGPEN------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL-- 69 (163)
Q Consensus 7 ~~~~f~y~~~------~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~-- 69 (163)
.+++|.|+.+ .++++++|+||+ |.+||+++|+| ||||||||| ++++.|+..| + ++...+.
T Consensus 7 ~nl~~~~~~~~~~~~~~~~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLS-LKSGETVALLG-RSGCGKSTL-ARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred eceEEEecCCccccccCceeeEeceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 3678888631 135799999999 99999999999 999999999 6778888766 2 2222222
Q ss_pred -HHHHHhc--cccCCCcccccCC-------------CC--------CchhHHHhchhcccCC-CccCCCCCCCCHHHHHH
Q psy17517 70 -EDLRSMA--LAQNQSAQAFLGP-------------EN--------PEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTV 124 (163)
Q Consensus 70 -~~~~~~~--~~q~~~~~~~~~~-------------~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQr 124 (163)
..+++.+ ++|++...++... .. ...++++.+++ . ...++++.+||||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL----DDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCC----ChhHhhCCCccCChHHHHH
Confidence 2345555 5555421111000 00 01124444444 3 35678899999999999
Q ss_pred HHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 125 AALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 125 vaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 160 l~laral~----~~p~lllLDEPt~~LD~~~~~~~~~~l 194 (268)
T PRK10419 160 VCLARALA----VEPKLLILDEAVSNLDLVLQAGVIRLL 194 (268)
T ss_pred HHHHHHHh----cCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 99999996 789999999999999999998887653
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=8.7e-31 Score=211.15 Aligned_cols=133 Identities=26% Similarity=0.258 Sum_probs=107.1
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccC---HHHHHHh---ccccCC-
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLG---LEDLRSM---ALAQNQ- 81 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~---~~~~~~~---~~~q~~- 81 (163)
-...+.|+||+ |+.||+++|.| -|||||||| .+++.++..| .++..++ +.++|++ +|||+.
T Consensus 40 ~vvGv~~~sl~-v~~GeIfViMG-LSGSGKSTL-vR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLD-VEEGEIFVIMG-LSGSGKSTL-VRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceee-ecCCeEEEEEe-cCCCCHHHH-HHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 35578999999 99999999999 999999999 7889999988 2444444 3455544 388875
Q ss_pred --------CcccccCCC----------CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEE
Q psy17517 82 --------SAQAFLGPE----------NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143 (163)
Q Consensus 82 --------~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lll 143 (163)
+|..| +++ .+..++++.+|+ .++.+++|.+|||||||||.+||||+ ++|++++
T Consensus 117 LlPhrtVl~Nv~f-GLev~Gv~~~er~~~a~~~l~~VgL----~~~~~~yp~eLSGGMqQRVGLARAla----~~~~IlL 187 (386)
T COG4175 117 LLPHRTVLENVAF-GLEVQGVPKAEREERALEALELVGL----EGYADKYPNELSGGMQQRVGLARALA----NDPDILL 187 (386)
T ss_pred cccchhHhhhhhc-ceeecCCCHHHHHHHHHHHHHHcCc----hhhhhcCcccccchHHHHHHHHHHHc----cCCCEEE
Confidence 33333 221 122357888888 89999999999999999999999997 7899999
Q ss_pred eecccCCCCHHHHHHHHhh
Q psy17517 144 LDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 144 LDEPts~LD~~~~~~i~~~ 162 (163)
+|||+|+|||--+.++++.
T Consensus 188 MDEaFSALDPLIR~~mQde 206 (386)
T COG4175 188 MDEAFSALDPLIRTEMQDE 206 (386)
T ss_pred ecCchhhcChHHHHHHHHH
Confidence 9999999999998888764
No 209
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.2e-30 Score=204.76 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=100.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------ccc--cc-------cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------ATI--RS-------LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~i--~~-------~~~~~ 71 (163)
+.+|.|++ .++++|+||+ |++||+++|+| +|||||||| ++++.++.+| +.+ .+ .+...
T Consensus 12 ~l~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 12 NLNLFYTD---FKALNNINIK-ILKNSITALIG-PSGCGKSTF-LRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred eeEEEeCC---ceeecceeeE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 67788853 5699999999 99999999999 999999999 6677777653 221 11 12234
Q ss_pred HHHhc--cccCCCccccc---------CC--CC--Cc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GP--EN--PE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~--~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .+|. .. .. .. ..+++.+++.....+..+.++.+||||||||++|||
T Consensus 86 ~~~~i~~v~q~~--~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 86 LRRKIGMVFQTP--NPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HhhceEEEeecc--ccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 45555 45554 2220 00 00 00 112333333100123457789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+ .+|+++||||||++||+.++..+.++|
T Consensus 164 al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 193 (254)
T PRK14273 164 TLA----IEPNVILMDEPTSALDPISTGKIEELI 193 (254)
T ss_pred HHH----cCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 996 789999999999999999999988753
No 210
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=4.7e-30 Score=204.17 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=101.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCCc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQSA 83 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~~ 83 (163)
++++.|++ .++++++||+ |++||+++|+| ||||||||| ++++.++.+| +.+. ++. +..+ ++|++..
T Consensus 9 ~l~~~~~~---~~vl~~vs~~-i~~Ge~~~I~G-~NGsGKSTL-l~~i~Gl~~p~~G~i~-~~~---~~~i~~v~q~~~~ 78 (251)
T PRK09544 9 NVSVSFGQ---RRVLSDVSLE-LKPGKILTLLG-PNGAGKSTL-VRVVLGLVAPDEGVIK-RNG---KLRIGYVPQKLYL 78 (251)
T ss_pred ceEEEECC---ceEEEeEEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEE-ECC---ccCEEEecccccc
Confidence 67788863 5799999999 99999999999 999999999 6778888776 3332 110 1223 4554321
Q ss_pred ccc----------cCCCC---CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCC
Q psy17517 84 QAF----------LGPEN---PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA 150 (163)
Q Consensus 84 ~~~----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~ 150 (163)
... ..... ...++++.+++ .+..++++..||||||||++|||||+ .+|+++||||||++
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~ 150 (251)
T PRK09544 79 DTTLPLTVNRFLRLRPGTKKEDILPALKRVQA----GHLIDAPMQKLSGGETQRVLLARALL----NRPQLLVLDEPTQG 150 (251)
T ss_pred ccccChhHHHHHhccccccHHHHHHHHHHcCC----hHHHhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcC
Confidence 100 00000 11234556666 66778899999999999999999996 78999999999999
Q ss_pred CCHHHHHHHHhh
Q psy17517 151 LDNTNIGKVASY 162 (163)
Q Consensus 151 LD~~~~~~i~~~ 162 (163)
||+.++..+.+.
T Consensus 151 LD~~~~~~l~~~ 162 (251)
T PRK09544 151 VDVNGQVALYDL 162 (251)
T ss_pred CCHHHHHHHHHH
Confidence 999999988765
No 211
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.3e-30 Score=204.86 Aligned_cols=144 Identities=22% Similarity=0.184 Sum_probs=100.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--c-------ccc--ccCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--A-------TIR--SLGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~-------~i~--~~~~~~ 71 (163)
+.+|.|+. .++|+|+||+ |++||+++|+| ||||||||| ++++.|+.. | + ++. ..+...
T Consensus 18 ~l~~~~~~---~~il~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 18 NLNFYYGK---FHALKNINLD-IAKNQVTAFIG-PSGCGKSTL-LRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred EEEEEeCC---eEEeeceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 66788863 4799999999 99999999999 999999999 667777753 2 2 221 122334
Q ss_pred HHHhc--cccCCCccccc---------CCC----CC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GPE----NP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++++ ++|++ .++. ... .. .+++++.+++.....+..++++.+|||||+||++|||
T Consensus 92 ~~~~i~~~~q~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 92 LRAKVGMVFQKP--TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HhcceEEEecCC--ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 55555 55554 2221 000 00 0123344443100023457789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.+.|
T Consensus 170 al~----~~p~lllLDEPt~~LD~~~~~~l~~~L 199 (260)
T PRK10744 170 GIA----IRPEVLLLDEPCSALDPISTGRIEELI 199 (260)
T ss_pred HHH----CCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887653
No 212
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=9e-30 Score=198.54 Aligned_cols=144 Identities=25% Similarity=0.264 Sum_probs=101.5
Q ss_pred ccceeeCCC---CC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--c--c-------cCH
Q psy17517 7 SAQAFLGPE---NP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--R--S-------LGL 69 (163)
Q Consensus 7 ~~~~f~y~~---~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~--~-------~~~ 69 (163)
.++++.|+. ++ ..++++|+||+ |.+||+++|+| +|||||||| ++++.++.+| +.+ . + .+.
T Consensus 5 ~~l~~~~~~~~~~~~~~~il~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 5 EDLSKTFTLHQQGGVRLPVLKNVSLT-VNAGECVALSG-PSGAGKSTL-LKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EeeEEEeecccCCCcceEEEecceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 356778853 11 24799999999 99999999999 999999999 6778888776 222 1 1 111
Q ss_pred HH---HH-Hhc--cccCCCccccc---------------CCCCC-----chhHHHhchhcccCCC-ccCCCCCCCCHHHH
Q psy17517 70 ED---LR-SMA--LAQNQSAQAFL---------------GPENP-----EEPYLQGVNYNCVAPG-KRFQPMTNLSGGEK 122 (163)
Q Consensus 70 ~~---~~-~~~--~~q~~~~~~~~---------------~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~LSgGqk 122 (163)
.. ++ +++ ++|++. ++. ..... ..++++.+++ .+ ..++++.+||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLR--VIPRVSALEVVAEPLLERGVPREAARARARELLARLNI----PERLWHLPPATFSGGEQ 155 (224)
T ss_pred HHHHHHHhcceEEEecccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----chhhhhCCcccCCHHHH
Confidence 21 22 234 556542 211 10000 0124455555 43 34678999999999
Q ss_pred HHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 123 TVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 123 QrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||++|||||+ .+|++++|||||++||+.++..+.+.|
T Consensus 156 qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l 192 (224)
T TIGR02324 156 QRVNIARGFI----ADYPILLLDEPTASLDAANRQVVVELI 192 (224)
T ss_pred HHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 9999999995 789999999999999999999987753
No 213
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.96 E-value=2.1e-30 Score=202.11 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=102.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHHHH-HHhc--cccC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLEDL-RSMA--LAQN 80 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~~~-~~~~--~~q~ 80 (163)
++++.|+. +++++++||+ +.+||+++|+| ||||||||| ++++.|+.+| +. +.+.+.... ++.+ ++|.
T Consensus 5 ~v~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~ 78 (223)
T TIGR03740 5 NLSKRFGK---QTAVNNISLT-VPKNSVYGLLG-PNGAGKSTL-LKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIES 78 (223)
T ss_pred eEEEEECC---EEEEeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEeccccccccEEEEcCC
Confidence 56778863 5799999999 99999999999 999999999 6778888766 22 222111111 1234 4444
Q ss_pred CCcccccC-------------CC---CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 81 QSAQAFLG-------------PE---NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 81 ~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
+ .++.. .. ....++++.+++ .+..++++.+|||||+||++||||++ .+|++++|
T Consensus 79 ~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~~rv~laral~----~~p~llll 148 (223)
T TIGR03740 79 P--PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL----TNTGKKKAKQFSLGMKQRLGIAIALL----NHPKLLIL 148 (223)
T ss_pred C--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC----cHHHhhhHhhCCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 3 22210 00 011235566666 66778889999999999999999996 78999999
Q ss_pred ecccCCCCHHHHHHHHhhC
Q psy17517 145 DEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~l 163 (163)
||||++||+.++..+.++|
T Consensus 149 DEP~~~LD~~~~~~l~~~L 167 (223)
T TIGR03740 149 DEPTNGLDPIGIQELRELI 167 (223)
T ss_pred CCCccCCCHHHHHHHHHHH
Confidence 9999999999999887753
No 214
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.8e-30 Score=213.65 Aligned_cols=138 Identities=18% Similarity=0.141 Sum_probs=101.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc---------CHHHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL---------GLEDLRS 74 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~---------~~~~~~~ 74 (163)
+.++.|++ . .+ |+||+ |++||+++|+| ||||||||| ++++.|+.+| +. +.+. .....++
T Consensus 5 ~l~k~~~~---~-~~-~vsl~-i~~Ge~~~l~G-~nGsGKSTL-l~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 5 NFKQQLGD---L-CL-TVNLT-LPAQGITAIFG-RSGAGKTSL-INAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred EEEEEeCC---E-EE-EEEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 56677853 2 23 89999 99999999999 999999999 6778888776 21 1111 1223345
Q ss_pred hc--cccCCCccccc----------CCCC----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 75 MA--LAQNQSAQAFL----------GPEN----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 75 ~~--~~q~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
++ ++|++ .+|. .... ...++++.+++ .+..++++.+||||||||++|||||+ .+
T Consensus 77 ~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgGq~qRvalaraL~----~~ 146 (352)
T PRK11144 77 RIGYVFQDA--RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGI----EPLLDRYPGSLSGGEKQRVAIGRALL----TA 146 (352)
T ss_pred CEEEEcCCc--ccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCC----chhhhCCcccCCHHHHHHHHHHHHHH----cC
Confidence 55 55554 2331 1111 12335666776 67788999999999999999999996 78
Q ss_pred CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+++||||||++||+.++..+.+.|
T Consensus 147 p~llLLDEPts~LD~~~~~~l~~~L 171 (352)
T PRK11144 147 PELLLMDEPLASLDLPRKRELLPYL 171 (352)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999887653
No 215
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7e-30 Score=198.02 Aligned_cols=139 Identities=19% Similarity=0.137 Sum_probs=100.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc---------CHHHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL---------GLEDLRS 74 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~---------~~~~~~~ 74 (163)
++++.|++ +.+ |+||+ |.+ |+++|+| ||||||||| ++++.++.+| +. +.+. +....++
T Consensus 5 ~l~~~~~~---~~~--~vsl~-i~~-e~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFD-LNE-EVTGIFG-ASGAGKSTL-LRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred eeeEecCC---eee--CceEE-Ecc-eeEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 67888964 334 99999 999 9999999 999999999 6778888776 21 1111 1223445
Q ss_pred hccccCCCcccccC----------CCC--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 75 MALAQNQSAQAFLG----------PEN--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 75 ~~~~q~~~~~~~~~----------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
.+.+..++..++.. ... ...++++.+++ .+..++++.+||||||||++|||||+
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~la~al~---- 147 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL----DHLLNRYPAQLSGGEKQRVALARALA---- 147 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCC----HhHhhcCcccCCHHHHHHHHHHHHHh----
Confidence 55333333223211 000 01224555665 56678899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.+++.+.++|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l 174 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPEL 174 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 216
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.96 E-value=5.7e-30 Score=214.36 Aligned_cols=139 Identities=19% Similarity=0.144 Sum_probs=104.1
Q ss_pred ceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-----------cccccCHHH---H
Q psy17517 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-----------TIRSLGLED---L 72 (163)
Q Consensus 9 ~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-----------~i~~~~~~~---~ 72 (163)
....|. ...+++|+||+ |++||+++|+| +|||||||| ++++.++.+| + ++...+..+ +
T Consensus 30 ~~~~~g---~~~~l~~vsf~-i~~Gei~~I~G-~nGsGKSTL-lr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~ 103 (382)
T TIGR03415 30 ILDETG---LVVGVANASLD-IEEGEICVLMG-LSGSGKSSL-LRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRL 103 (382)
T ss_pred HHHhhC---CEEEEEeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHH
Confidence 344554 36799999999 99999999999 999999999 7788888877 1 122223222 3
Q ss_pred H-Hhc--cccCCCccccc----------C-----CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 73 R-SMA--LAQNQSAQAFL----------G-----PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 73 ~-~~~--~~q~~~~~~~~----------~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
| +++ +||++ .+|. . ... ...++++.+++ .+..++++.+||||||||++|||
T Consensus 104 r~~~i~~vfQ~~--~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL----~~~~~~~~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 104 RTHRVSMVFQKF--ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGL----AQWADKKPGELSGGMQQRVGLAR 177 (382)
T ss_pred hcCCEEEEECCC--cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHH
Confidence 3 244 56654 2221 1 000 11235667777 77889999999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ ++|+++||||||++||+..+.++.+.|
T Consensus 178 ALa----~~P~ILLlDEPts~LD~~~r~~l~~~L 207 (382)
T TIGR03415 178 AFA----MDADILLMDEPFSALDPLIRTQLQDEL 207 (382)
T ss_pred HHh----cCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999988753
No 217
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8e-30 Score=202.99 Aligned_cols=145 Identities=21% Similarity=0.218 Sum_probs=100.9
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------cc--ccc-------cCHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------AT--IRS-------LGLE 70 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~--i~~-------~~~~ 70 (163)
.++++.|++ .++|+|+||+ |.+||+++|+| ||||||||| ++++.|+..| +. +.+ ....
T Consensus 8 ~~v~~~~~~---~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 8 KDLNIYYGS---FHAVEDVNLN-IEPRSVTAFIG-PSGCGKSTV-LRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred eeEEEEECC---EeeeeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 367788863 4799999999 99999999999 999999999 6777777642 11 111 1223
Q ss_pred HHHHhc--cccCCCcccccC------------CCC--Cc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHH
Q psy17517 71 DLRSMA--LAQNQSAQAFLG------------PEN--PE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAAL 127 (163)
Q Consensus 71 ~~~~~~--~~q~~~~~~~~~------------~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvai 127 (163)
.+++.+ ++|.+ .++.. ... .. +++++.+++.....+..++++.+||||||||++|
T Consensus 82 ~~~~~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (258)
T PRK14241 82 AVRRTIGMVFQRP--NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCI 159 (258)
T ss_pred HHhcceEEEcccc--ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 445555 44443 22210 000 00 1133344431001245678899999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||+ .+|+++||||||++||+.++..+.++|
T Consensus 160 aral~----~~p~llllDEPt~~LD~~~~~~l~~~l 191 (258)
T PRK14241 160 ARAIA----VEPDVLLMDEPCSALDPISTLAIEDLI 191 (258)
T ss_pred HHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 99996 789999999999999999999887753
No 218
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=4.8e-30 Score=221.34 Aligned_cols=140 Identities=21% Similarity=0.244 Sum_probs=103.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc-------ccccCHHHH-HHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT-------IRSLGLEDL-RSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~-------i~~~~~~~~-~~~~- 76 (163)
+.++.|++ .++++|+||+ |.+||+++|+| ||||||||| ++++.++..| +. +...+.... ++++
T Consensus 9 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~l~G-~NGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 9 GIDKAFPG---VKALSGAALN-VYPGRVMALVG-ENGAGKSTM-MKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eeEEEeCC---eEEeeeeeEE-EcCCeEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 56788853 5799999999 99999999999 999999999 6778888766 22 222222222 3334
Q ss_pred -cccCCCcccc----------cCCC-----C---------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 77 -LAQNQSAQAF----------LGPE-----N---------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 77 -~~q~~~~~~~----------~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
++|++. ++ +... . ...++++.+++ .+..++++.+||||||||++|||||
T Consensus 83 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 83 IIHQELN--LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL----RFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred EEEcchh--ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCC----CCCccCchhhCCHHHHHHHHHHHHH
Confidence 566541 11 1100 0 01234556666 6677889999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.++|
T Consensus 157 ~----~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (501)
T PRK10762 157 S----FESKVIIMDEPTDALTDTETESLFRVI 184 (501)
T ss_pred h----cCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 6 789999999999999999999987653
No 219
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=8e-30 Score=205.06 Aligned_cols=146 Identities=19% Similarity=0.206 Sum_probs=102.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc-----------------cccccCHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-----------------TIRSLGLE 70 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-----------------~i~~~~~~ 70 (163)
+.++.|++ .++|+|+||+ |.+||+++|+| ||||||||| ++++.++.+|. ++...+..
T Consensus 6 nl~~~~~~---~~il~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-l~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 6 HLHVARRH---RAILRDLSLR-IEPGRVTALLG-RNGAGKSTL-LKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred EEEEEECC---EeEEecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 56777853 5799999999 99999999999 999999999 67777776542 12222333
Q ss_pred HHHHhc--cccCCCcc---------cccC-CCC------------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHH
Q psy17517 71 DLRSMA--LAQNQSAQ---------AFLG-PEN------------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAA 126 (163)
Q Consensus 71 ~~~~~~--~~q~~~~~---------~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrva 126 (163)
++++.+ ++|.+... .+.. ... ...++++.+++ .+..++++.+|||||+||++
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~ 155 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA----TALVGRDVTTLSGGELARVQ 155 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc----HhhhcCCcccCCHHHHHHHH
Confidence 444444 55553210 0100 000 01124455555 56678899999999999999
Q ss_pred HHHHHHhc-----ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 127 LALLFAIH-----SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 127 iAraL~~~-----~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||||+.. --.+|+++||||||++||+.++..+.++|
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l 197 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTV 197 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 99999610 00379999999999999999999988753
No 220
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=8.6e-30 Score=193.12 Aligned_cols=120 Identities=20% Similarity=0.163 Sum_probs=89.6
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccc--cccCHHHHHHhccccCCCcccccCCCCCchh
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATI--RSLGLEDLRSMALAQNQSAQAFLGPENPEEP 95 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i--~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 95 (163)
.+++++|+||+ +++|++++|+| |||||||||+ +++.+ ....+ ........+..+++..+ .+
T Consensus 7 ~~~~l~~isl~-i~~G~~~~l~G-~nG~GKSTLl-~~il~--~~G~v~~~~~~~~~~~~~~~~~~q------------~~ 69 (176)
T cd03238 7 NVHNLQNLDVS-IPLNVLVVVTG-VSGSGKSTLV-NEGLY--ASGKARLISFLPKFSRNKLIFIDQ------------LQ 69 (176)
T ss_pred eeeeecceEEE-EcCCCEEEEEC-CCCCCHHHHH-HHHhh--cCCcEEECCcccccccccEEEEhH------------HH
Confidence 56899999999 99999999999 9999999994 54432 21221 11110011111222111 45
Q ss_pred HHHhchhcccCCC-ccCCCCCCCCHHHHHHHHHHHHHHhcccCC--CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 96 YLQGVNYNCVAPG-KRFQPMTNLSGGEKTVAALALLFAIHSYHP--APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~LSgGqkQrvaiAraL~~~~~~~--p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++.+++ .. ..++++.+||||||||++|||+|+ .+ |+++||||||++||+.+++.+.+.
T Consensus 70 ~l~~~~L----~~~~~~~~~~~LSgGq~qrl~laral~----~~~~p~llLlDEPt~~LD~~~~~~l~~~ 131 (176)
T cd03238 70 FLIDVGL----GYLTLGQKLSTLSGGELQRVKLASELF----SEPPGTLFILDEPSTGLHQQDINQLLEV 131 (176)
T ss_pred HHHHcCC----CccccCCCcCcCCHHHHHHHHHHHHHh----hCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 6777777 44 478889999999999999999996 78 999999999999999999988765
No 221
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.2e-30 Score=225.48 Aligned_cols=145 Identities=20% Similarity=0.199 Sum_probs=105.2
Q ss_pred cceeeCCCC--------CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHH
Q psy17517 8 AQAFLGPEN--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLE 70 (163)
Q Consensus 8 ~~~f~y~~~--------~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~ 70 (163)
++++.|+.. ...++++||||+ |.+||+++|+| +|||||||| ++++.++.+| + ++...+..
T Consensus 318 ~l~~~y~~~~~~~~~~~~~~~~l~~vs~~-i~~Ge~~~lvG-~nGsGKSTL-lk~i~Gl~~p~~G~I~~~g~~i~~~~~~ 394 (623)
T PRK10261 318 NLVTRFPLRSGLLNRVTREVHAVEKVSFD-LWPGETLSLVG-ESGSGKSTT-GRALLRLVESQGGEIIFNGQRIDTLSPG 394 (623)
T ss_pred eeEEEEcCCCccccccCCceEEEeeeEeE-EcCCCEEEEEC-CCCCCHHHH-HHHHHcCCCCCCcEEEECCEECCcCCHH
Confidence 566778631 124699999999 99999999999 999999999 6777888766 1 23333222
Q ss_pred ---HHHHhc--cccCCCccccc---------------CCCCC------chhHHHhchhcccCC-CccCCCCCCCCHHHHH
Q psy17517 71 ---DLRSMA--LAQNQSAQAFL---------------GPENP------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKT 123 (163)
Q Consensus 71 ---~~~~~~--~~q~~~~~~~~---------------~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQ 123 (163)
.+++++ ++|++...++. ..... ..++++.+++ . ...++++.+|||||||
T Consensus 395 ~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL----~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 395 KLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL----LPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred HHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC----CHHHhhCCcccCCHHHHH
Confidence 234445 77775322321 00000 1124555555 3 4578899999999999
Q ss_pred HHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 124 VAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 124 rvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+|||||+ .+|+++||||||++||+.++.++.++|
T Consensus 471 Rv~iAraL~----~~p~llllDEPts~LD~~~~~~i~~ll 506 (623)
T PRK10261 471 RICIARALA----LNPKVIIADEAVSALDVSIRGQIINLL 506 (623)
T ss_pred HHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 999999996 789999999999999999999988754
No 222
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.96 E-value=1.2e-29 Score=240.02 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=108.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c--------cccccCHHHHHHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A--------TIRSLGLEDLRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~--------~i~~~~~~~~~~~~- 76 (163)
+++|.||..++.++|+|+||+ |++||+++|+| ||||||||| ++++.++++| + ++...+..++|+++
T Consensus 387 nVsf~Y~~~~~~~vL~~isl~-i~~Ge~vaIvG-~SGsGKSTL-l~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig 463 (1466)
T PTZ00265 387 NVRFHYDTRKDVEIYKDLNFT-LTEGKTYAFVG-ESGCGKSTI-LKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIG 463 (1466)
T ss_pred EEEEEcCCCCCCceeccceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhcc
Confidence 779999865456799999999 99999999999 999999999 7888999887 1 23445566778877
Q ss_pred -cccCCCcccc---------cCCC--------------------------------------------------------
Q psy17517 77 -LAQNQSAQAF---------LGPE-------------------------------------------------------- 90 (163)
Q Consensus 77 -~~q~~~~~~~---------~~~~-------------------------------------------------------- 90 (163)
++|++ .+| ++..
T Consensus 464 ~V~Q~~--~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 464 VVSQDP--LLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred Eecccc--cchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 45554 333 1110
Q ss_pred --CCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 91 --NPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 91 --~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
...++ +++.+++. ...+...++.+.+||||||||++|||||+ ++|++||||||||+||+.++..
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll----~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII----RNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCcccccCHHHHHH
Confidence 00111 22222221 01122346778999999999999999995 8899999999999999999999
Q ss_pred HHhhC
Q psy17517 159 VASYI 163 (163)
Q Consensus 159 i~~~l 163 (163)
+.+.|
T Consensus 618 i~~~L 622 (1466)
T PTZ00265 618 VQKTI 622 (1466)
T ss_pred HHHHH
Confidence 87653
No 223
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.96 E-value=3.7e-30 Score=213.87 Aligned_cols=138 Identities=20% Similarity=0.163 Sum_probs=101.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccccc----CHHHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSL----GLEDLRS 74 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~----~~~~~~~ 74 (163)
+.++.|++ .. + ++||+ +++||+++|+| ||||||||| ++++.++.+| + ++... .....++
T Consensus 4 ~l~~~~~~---~~-~-~isl~-i~~Gei~~l~G-~nGsGKSTL-l~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFT-LPGQGVTAIFG-RSGSGKTTL-IRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEECC---EE-E-EEEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 56778853 33 4 99999 99999999999 999999999 6778888776 2 12111 1123344
Q ss_pred hc--cccCCCccccc----------CCC----C----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 75 MA--LAQNQSAQAFL----------GPE----N----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 75 ~~--~~q~~~~~~~~----------~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
.+ ++|++ .+|. ... . ...++++.+++ .+..++++.+||||||||++|||||+
T Consensus 76 ~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~LSgGqkqRvalAraL~-- 147 (354)
T TIGR02142 76 RIGYVFQEA--RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGI----GHLLGRLPGRLSGGEKQRVAIGRALL-- 147 (354)
T ss_pred CeEEEecCC--ccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCC----hhHhcCChhhCCHHHHHHHHHHHHHH--
Confidence 45 55554 2321 110 0 01235666666 67888999999999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 148 --~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 148 --SSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred --cCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 224
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.2e-30 Score=205.27 Aligned_cols=144 Identities=24% Similarity=0.272 Sum_probs=100.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--c-------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--A-------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~-------~i~~--~~~~~ 71 (163)
+++|.|++ .++|+|+||+ |.+||+++|+| ||||||||| ++++.|+.. | + ++.. .+...
T Consensus 24 nl~~~~~~---~~il~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 24 DVSVFYGE---KQALFDVDLD-IPEKTVTAFIG-PSGCGKSTF-LRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred eEEEEECC---EEEEEEEEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence 57888863 5799999999 99999999999 999999999 667777764 2 2 2221 12334
Q ss_pred HHHhc--cccCCCccccc---------CC--CC---C--c-----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GP--EN---P--E-----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~--~~---~--~-----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiA 128 (163)
+++.+ ++|.+ .+|. .. .. . . .++++.+++........++++.+||||||||++||
T Consensus 98 ~~~~i~~v~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 98 LRARVGMVFQKP--NPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HhhceEEEecCC--CCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 55555 45544 2221 00 00 0 0 12344444410001245678999999999999999
Q ss_pred HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 129 LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 129 raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||+ .+|+++||||||++||+.++..+.++|
T Consensus 176 ral~----~~p~lllLDEPt~~LD~~~~~~l~~~L 206 (267)
T PRK14235 176 RAIA----VSPEVILMDEPCSALDPIATAKVEELI 206 (267)
T ss_pred HHHH----cCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 9996 789999999999999999999887753
No 225
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.96 E-value=9.7e-30 Score=197.21 Aligned_cols=136 Identities=24% Similarity=0.226 Sum_probs=100.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
++++.|+. .+.|+||+ +.+||+++|+| ||||||||| ++++.++.+| + ++.... .+++.+
T Consensus 5 ~l~~~~~~-----~~~~~s~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 5 KVRYEYEH-----LPMEFDLN-VADGEIVAIMG-PSGAGKSTL-LNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred eeeEEeCC-----cceeeEEE-EeCCcEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 56778852 45799999 99999999999 999999999 6777888776 1 222211 234445
Q ss_pred cccCCCccccc----------CC-CC---------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GP-EN---------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+|. .. .. ...++++.+++ .+..++.+.+|||||+||++|||||+
T Consensus 75 v~q~~--~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~laral~---- 144 (213)
T TIGR01277 75 LFQEN--NLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGI----ADYLDRLPEQLSGGQRQRVALARCLV---- 144 (213)
T ss_pred EeccC--ccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCc----HHHhhCCcccCCHHHHHHHHHHHHHh----
Confidence 55554 2221 00 00 01224556666 56778899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|++++|||||++||+.++..+.++|
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l 171 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALV 171 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 226
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1e-29 Score=219.55 Aligned_cols=140 Identities=19% Similarity=0.233 Sum_probs=104.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc----cc-------ccccCHHHH-HHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI----AT-------IRSLGLEDL-RSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~----~~-------i~~~~~~~~-~~~ 75 (163)
+.+|.|++ .++++||||+ |++||+++|+| ||||||||| ++++.++.+| +. +...+..+. ++.
T Consensus 10 nl~~~~~~---~~il~~isl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 10 NITKTFGG---VKALDNVSLK-VRAGEIVSLCG-ENGAGKSTL-MKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eeEEEeCC---eEeecceeEE-EeCCeEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 67888853 5799999999 99999999999 999999999 6777777663 22 222333332 334
Q ss_pred c--cccCCCcccc----------cCCC-------C------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 76 A--LAQNQSAQAF----------LGPE-------N------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 76 ~--~~q~~~~~~~----------~~~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
+ ++|++. ++ +... . ..+++++.+++ .+..++++.+||||||||++||||
T Consensus 84 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 84 IAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL----DINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred eEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC----CCCcccchhhCCHHHHHHHHHHHH
Confidence 4 566541 21 1110 0 01235566666 667889999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ .+|+++||||||++||+.++..+.++|
T Consensus 158 l~----~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (506)
T PRK13549 158 LN----KQARLLILDEPTASLTESETAVLLDII 186 (506)
T ss_pred Hh----cCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 96 789999999999999999999988753
No 227
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.3e-29 Score=198.98 Aligned_cols=138 Identities=22% Similarity=0.192 Sum_probs=103.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|+|+. +++++|+||+ |++||+++|+| +|||||||| ++++.++.+| + ++...+. .++.+
T Consensus 5 ~l~~~~~~---~~il~~i~~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 5 NVSKFYGG---FVALDGVSLD-IKEGEFFTLLG-PSGCGKTTL-LRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred eEEEEeCC---eeeeccceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 57888863 5799999999 99999999999 999999999 6778888877 2 2222221 23344
Q ss_pred cccCCCcccccCC------------C---C-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLGP------------E---N-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~~------------~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+|... . . ....+++.+++ .+..++.+..||+||+||++|||||+
T Consensus 77 ~~q~~--~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~lS~G~~qrl~laral~---- 146 (232)
T cd03300 77 VFQNY--ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL----EGYANRKPSQLSGGQQQRVAIARALV---- 146 (232)
T ss_pred Eeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHHHHh----
Confidence 44443 232110 0 0 01124555566 67778899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l 173 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLEL 173 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999987653
No 228
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.1e-30 Score=202.79 Aligned_cols=144 Identities=20% Similarity=0.251 Sum_probs=100.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------c-------ccccc--CHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------A-------TIRSL--GLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~-------~i~~~--~~~~ 71 (163)
+.+|.|++ .++|+|+||+ |.+||+++|+| +|||||||| ++++.++..+ + ++... +...
T Consensus 17 ~l~~~~~~---~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 17 NLNLWYGE---KQALKNVSMQ-IPKNSVTALIG-PSGCGKSTF-IRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeCC---eeeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 56788853 5799999999 99999999999 999999999 6677777642 2 12111 1223
Q ss_pred HHHhc--cccCCCccccc---------CC--CC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GP--EN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~--~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
+++.+ ++|.+ .++. .. .. . ..++++.+++........++++.+|||||+||++||||
T Consensus 91 ~~~~i~~v~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 91 LRKNVGMVFQKP--NPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred HhhhEEEEecCC--ccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 45555 45544 2221 00 00 0 01234444431111234577899999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ ++|+++||||||++||+.++..+.++|
T Consensus 169 l~----~~p~llllDEPt~~LD~~~~~~l~~~l 197 (258)
T PRK14268 169 LA----VKPKIILFDEPTSALDPISTARIEDLI 197 (258)
T ss_pred HH----cCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 96 789999999999999999999887753
No 229
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.5e-30 Score=201.39 Aligned_cols=145 Identities=20% Similarity=0.254 Sum_probs=100.6
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------cc-------cc-ccCHHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------AT-------IR-SLGLED 71 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~-------i~-~~~~~~ 71 (163)
.+.+|.|++ +++++|+||+ |.+||+++|+| ||||||||| ++++.++..+ +. +. ..+...
T Consensus 7 ~~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 7 ENLDLFYGE---NQALKSINLP-IPARQVTALIG-PSGCGKSTL-LRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eccEEEECC---eeeeecceEE-ecCCCEEEEEC-CCCCCHHHH-HHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 367788863 5799999999 99999999999 999999999 6667777653 21 11 122334
Q ss_pred HHHhc--cccCCCccccc---------C--CCC-Cch--------hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G--PEN-PEE--------PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~--~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .+|. . ... ... +.++.+++.....+..++++.+||||||||++|||
T Consensus 81 ~~~~i~~~~q~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 81 LRIKVGMVFQKP--NPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HHhheeEEecCC--CcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 55555 45543 2221 0 000 000 12223333111123456788999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.++|
T Consensus 159 al~----~~p~llllDEP~~~LD~~~~~~l~~~l 188 (249)
T PRK14253 159 TIA----MEPDVILMDEPTSALDPIATHKIEELM 188 (249)
T ss_pred HHH----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 230
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-29 Score=194.41 Aligned_cols=136 Identities=26% Similarity=0.314 Sum_probs=101.6
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHh--ccccCCCcccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSM--ALAQNQSAQAF 86 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~--~~~q~~~~~~~ 86 (163)
++.++++|||+ +.+||+++|+| ||||||||| ++.+.|...| .+++.|+..++.++ +..|+..-.+-
T Consensus 13 Gr~ll~~vsl~-~~pGev~ailG-PNGAGKSTl-Lk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 13 GRRLLDGVSLD-LRPGEVLAILG-PNGAGKSTL-LKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred cceeccCccee-ccCCcEEEEEC-CCCccHHHH-HHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 47899999999 99999999999 999999999 6667777665 34566776665443 35555421111
Q ss_pred c--------C-------CCC-Cc----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC----EE
Q psy17517 87 L--------G-------PEN-PE----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP----FF 142 (163)
Q Consensus 87 ~--------~-------~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~----ll 142 (163)
| + .+. ++ +.++..+++ .+...+...+|||||||||.+||+||. +++|- +|
T Consensus 90 Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~----~~la~R~y~~LSGGEqQRVqlARvLaQ--l~~~v~~~r~L 163 (259)
T COG4559 90 FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL----SGLAGRDYRTLSGGEQQRVQLARVLAQ--LWPPVPSGRWL 163 (259)
T ss_pred eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcCh----hhhhccchhhcCchHHHHHHHHHHHHH--ccCCCCCCceE
Confidence 1 1 110 11 124555555 788899999999999999999999997 45554 99
Q ss_pred EeecccCCCCHHHHHHHHhh
Q psy17517 143 VLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~ 162 (163)
+||||||+||..++..++++
T Consensus 164 ~LDEPtsaLDi~HQ~~tl~l 183 (259)
T COG4559 164 FLDEPTSALDIAHQHHTLRL 183 (259)
T ss_pred EecCCccccchHHHHHHHHH
Confidence 99999999999998877653
No 231
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=2.8e-29 Score=188.26 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=93.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQA 85 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~ 85 (163)
+.++.|++ ++++++++||+ +.+||+++|+| ||||||||| ++++.++.+| +.+. ++. ++++.+..++..+
T Consensus 5 ~~~~~~~~--~~~~l~~i~l~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~-~~~---~~~i~~~~q~~~~ 75 (166)
T cd03223 5 NLSLATPD--GRVLLKDLSFE-IKPGDRLLITG-PSGTGKSSL-FRALAGLWPWGSGRIG-MPE---GEDLLFLPQRPYL 75 (166)
T ss_pred EEEEEcCC--CCeeeecCeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEE-ECC---CceEEEECCCCcc
Confidence 56788864 25799999999 99999999999 999999999 6778888776 2232 110 1334333332222
Q ss_pred ccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 86 FLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+ . ..+.+.+.+ . .+.+||||||||++|||||+ .+|++++|||||++||+.++..+.+.
T Consensus 76 ~-~-----~tv~~nl~~----~-----~~~~LS~G~~~rv~laral~----~~p~~lllDEPt~~LD~~~~~~l~~~ 133 (166)
T cd03223 76 P-L-----GTLREQLIY----P-----WDDVLSGGEQQRLAFARLLL----HKPKFVFLDEATSALDEESEDRLYQL 133 (166)
T ss_pred c-c-----ccHHHHhhc----c-----CCCCCCHHHHHHHHHHHHHH----cCCCEEEEECCccccCHHHHHHHHHH
Confidence 2 1 122333322 1 46899999999999999996 78999999999999999999988765
No 232
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=4.8e-29 Score=198.62 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=102.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|+.. ...+++++||+ |++||+++|+| +|||||||| ++++.++.+| + ++...+..++++.+
T Consensus 24 ~l~~~~~~~-~~~il~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~ 99 (257)
T cd03288 24 DLCVRYENN-LKPVLKHVKAY-IKPGQKVGICG-RTGSGKSSL-SLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSI 99 (257)
T ss_pred EEEEEeCCC-CCcceeEEEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEE
Confidence 567888642 35799999999 99999999999 999999999 6777888766 1 23334444556666
Q ss_pred cccCCCccccc-------CCCCC--c---hhHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 LAQNQSAQAFL-------GPENP--E---EPYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 ~~q~~~~~~~~-------~~~~~--~---~~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|++ .+|. ..... . .++++.+++.. ......+..+..||+||+||++|||||+ +
T Consensus 100 v~q~~--~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~----~ 173 (257)
T cd03288 100 ILQDP--ILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV----R 173 (257)
T ss_pred ECCCC--cccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh----c
Confidence 45544 2321 11111 1 11222222210 1133455678899999999999999996 7
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|+++||||||++||+.++..+.+.
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~ 198 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKV 198 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHH
Confidence 8999999999999999999888764
No 233
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.9e-30 Score=218.87 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=103.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHH-HHHHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLE-DLRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~-~~~~~~- 76 (163)
+.++.|++ .++++||||+ +++||+++|+| ||||||||| ++++.++.+| + ++...+.. .+++++
T Consensus 3 nl~~~~~~---~~il~~vs~~-i~~Ge~~~liG-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 3 NISKSFPG---VKALDNVNLK-VRPHSIHALMG-ENGAGKSTL-LKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred ceEEEeCC---EEeeeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 56788853 5799999999 99999999999 999999999 6778888766 2 22222222 234444
Q ss_pred -cccCCCcccc----------cC---CCC---C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 77 -LAQNQSAQAF----------LG---PEN---P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 77 -~~q~~~~~~~----------~~---~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++|++. ++ +. ... . .+++++.+++ ....++++.+|||||||||+|||||+
T Consensus 77 ~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 77 MVHQELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI----DIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EEecccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCC----CCCccCchhhCCHHHHHHHHHHHHHH
Confidence 566542 11 01 000 0 1224555555 56778899999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 151 ----~~p~lllLDEPt~~LD~~~~~~l~~~l 177 (491)
T PRK10982 151 ----YNAKIVIMDEPTSSLTEKEVNHLFTII 177 (491)
T ss_pred ----hCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 789999999999999999999987653
No 234
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=2.6e-29 Score=238.90 Aligned_cols=149 Identities=24% Similarity=0.260 Sum_probs=114.0
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|+|+++ ..++|+||||+ |++||.+||+| +|||||||| ..++.++++| .++++.+..++|+++.
T Consensus 1288 ~nVsf~Y~~~-~~~vL~~is~~-I~~GekiaIVG-rTGsGKSTL-~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1288 RNYCLRYRED-LDLVLRHINVT-IHGGEKVGIVG-RTGAGKSSL-TLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred EEEEEEeCCC-CcccccceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 3679999754 24799999999 99999999999 999999999 6778888877 4677888899999984
Q ss_pred ccCCCcccccC-------C--CCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 78 AQNQSAQAFLG-------P--ENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 78 ~q~~~~~~~~~-------~--~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
+..|+..+|.+ + +..+++ +++.+++. .+.+....+.+..||||||||+|||||| +++
T Consensus 1364 iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL----Lr~ 1439 (1522)
T TIGR00957 1364 IIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL----LRK 1439 (1522)
T ss_pred EECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH----HcC
Confidence 44444445521 1 222333 34444431 1123344567789999999999999999 489
Q ss_pred CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+++|||||||+||+++...|++.|
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHH
Confidence 9999999999999999999887653
No 235
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8e-30 Score=204.13 Aligned_cols=144 Identities=18% Similarity=0.188 Sum_probs=98.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--cc-------ccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--AT-------IRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~-------i~~--~~~~~ 71 (163)
+.+|.|++ .++++++||+ |.+||+++|+| +|||||||| ++++.|+.. | +. +.. .+...
T Consensus 26 ~l~~~~~~---~~il~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 26 DLSIYYGE---KRAVNDISMD-IEKHAVTALIG-PSGCGKSTF-LRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred EEEEEeCC---ceeeeceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 67888863 5799999999 99999999999 999999999 666777542 2 21 211 12223
Q ss_pred HHHhc--cccCCCccccc---------C--CCC--Cc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G--PEN--PE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~--~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++++ ++|++ .+|. . ... .. ...++.+++.....+..++++.+||||||||++|||
T Consensus 100 ~~~~i~~v~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 100 LRREIGMVFQKP--NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HhccEEEEecCC--ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 45555 45544 2221 0 000 00 112223332100013457889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.++|
T Consensus 178 al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 207 (268)
T PRK14248 178 TLA----MKPAVLLLDEPASALDPISNAKIEELI 207 (268)
T ss_pred HHh----CCCCEEEEcCCCcccCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 236
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.96 E-value=1.3e-29 Score=220.02 Aligned_cols=145 Identities=15% Similarity=0.177 Sum_probs=103.0
Q ss_pred cceeeCCCC-CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------c-------cccccCHHH-
Q psy17517 8 AQAFLGPEN-PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------A-------TIRSLGLED- 71 (163)
Q Consensus 8 ~~~f~y~~~-~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~-------~i~~~~~~~- 71 (163)
+.++.|+.. .+.++++||||+ |.+||+++|+| ||||||||| ++++.++.+| + ++...+..+
T Consensus 10 ~l~~~~~~~~~~~~~l~~isl~-i~~Ge~~~iiG-~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 86 (529)
T PRK15134 10 NLSVAFRQQQTVRTVVNDVSLQ-IEAGETLALVG-ESGSGKSVT-ALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTL 86 (529)
T ss_pred ceEEEecCCCCceeeeeceEEE-EeCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCcCCccceEEEECCEecccCCHHHH
Confidence 578888632 235799999999 99999999999 999999999 5667777653 2 222222222
Q ss_pred --HH-Hhc--cccCCCccccc----------------CCCC-----CchhHHHhchhcccCCC---ccCCCCCCCCHHHH
Q psy17517 72 --LR-SMA--LAQNQSAQAFL----------------GPEN-----PEEPYLQGVNYNCVAPG---KRFQPMTNLSGGEK 122 (163)
Q Consensus 72 --~~-~~~--~~q~~~~~~~~----------------~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~LSgGqk 122 (163)
++ +++ ++|++...++. .... +.+++++.+++ .+ ..++++.+||||||
T Consensus 87 ~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 87 RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGI----RQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC----CChHHHHhhCCcccCHHHH
Confidence 23 234 67765321210 0000 01224555555 33 35789999999999
Q ss_pred HHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 123 TVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 123 QrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||+|||||+ .+|+++||||||++||+.++..+.++|
T Consensus 163 qrv~iAraL~----~~p~llllDEPt~~LD~~~~~~l~~~l 199 (529)
T PRK15134 163 QRVMIAMALL----TRPELLIADEPTTALDVSVQAQILQLL 199 (529)
T ss_pred HHHHHHHHHh----cCCCEEEEcCCCCccCHHHHHHHHHHH
Confidence 9999999996 789999999999999999999988753
No 237
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=200.44 Aligned_cols=144 Identities=20% Similarity=0.243 Sum_probs=99.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc--c-----c-------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR--I-----A-------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~--~-----~-------~i~~--~~~~~ 71 (163)
++++.|++ .++++|+||+ |.+||+++|+| ||||||||| ++++.|+.. | + ++.. .+...
T Consensus 8 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 8 DLDLFYGD---FQALKKINLD-IEENQVTALIG-PSGCGKSTF-LRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred EEEEEECC---ceeeecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 67788863 4799999999 99999999999 999999999 677777643 1 2 1211 12334
Q ss_pred HHHhc--cccCCCccccc---------CC--CC--C---ch----hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GP--EN--P---EE----PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~--~~--~---~~----~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .++. .. .. . .. ++++.+++.....+..++++.+|||||+||++|||
T Consensus 82 ~~~~i~~~~q~~--~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 82 LRKRVGMVFQQP--NPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HhccEEEEecCC--ccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 55555 45544 2221 00 00 0 00 12223332100023457789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|++++|||||++||+.++..+.+.|
T Consensus 160 al~----~~p~llllDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14240 160 ALA----VEPEVLLMDEPTSALDPISTLKIEELI 189 (250)
T ss_pred HHh----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887653
No 238
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2e-29 Score=195.65 Aligned_cols=146 Identities=19% Similarity=0.180 Sum_probs=109.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHh-cc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSM-AL 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~-~~ 77 (163)
+.+-.|. ..++|++|||+ +++||+++++| +||+||||| ++.+.++.++ .+++..+.+++.+. +.
T Consensus 8 ~l~~~YG---~~~~L~gvsl~-v~~Geiv~llG-~NGaGKTTl-Lkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 8 NLSAGYG---KIQALRGVSLE-VERGEIVALLG-RNGAGKTTL-LKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eEeeccc---ceeEEeeeeeE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4555674 36899999999 99999999999 999999999 5667777776 47888887765443 55
Q ss_pred ccCCCcccccCC------------CC---Cchh-HHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCE
Q psy17517 78 AQNQSAQAFLGP------------EN---PEEP-YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPF 141 (163)
Q Consensus 78 ~q~~~~~~~~~~------------~~---~~~~-~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~l 141 (163)
+.++...+|... .. .... .-+.+.+.....+..+++..+|||||||.+||||||+ .+|++
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm----~~Pkl 157 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM----SRPKL 157 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh----cCCCE
Confidence 555544455211 00 0011 1222333223367888999999999999999999996 78999
Q ss_pred EEeecccCCCCHHHHHHHHhhC
Q psy17517 142 FVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 142 llLDEPts~LD~~~~~~i~~~l 163 (163)
|+|||||.+|-|.-..+|.+.|
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i 179 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAI 179 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHH
Confidence 9999999999999999887653
No 239
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=1.4e-29 Score=196.84 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=98.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c--cccccCH---------HHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A--TIRSLGL---------EDLRS 74 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~--~i~~~~~---------~~~~~ 74 (163)
...|.|+.. .++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| + .+.+.+. ...++
T Consensus 5 ~~~~~~~~~--~~il~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 5 NGYFSWGSG--LATLSNINIR-IPTGQLTMIVG-QVGCGKSSL-LLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeEEecCCC--CcceeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899753 5799999999 99999999999 999999999 6778888766 1 1211111 12233
Q ss_pred hc--cccCCCccccc---------CCCCCc---hhHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 75 MA--LAQNQSAQAFL---------GPENPE---EPYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 75 ~~--~~q~~~~~~~~---------~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
.+ ++|.+ .++. ...... ..+++.+++.. ......+.++..||||||||++|||+|+
T Consensus 80 ~i~~~~q~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~- 156 (218)
T cd03290 80 SVAYAAQKP--WLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY- 156 (218)
T ss_pred eEEEEcCCC--ccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh-
Confidence 44 45554 2221 111111 12333333210 0012245678999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
.+|+++||||||++||+.++..+.+
T Consensus 157 ---~~p~illlDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 157 ---QNTNIVFLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred ---hCCCEEEEeCCccccCHHHHHHHHH
Confidence 7899999999999999999887765
No 240
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=3e-29 Score=238.59 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=112.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++|+|+++ ..++|+||||+ |++||.++|+| +|||||||| ..++.++++| .++.+++.+++|+++.+
T Consensus 1313 nVsf~Y~~~-~~~vL~~vsf~-I~~GekVaIVG-rTGSGKSTL-l~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~i 1388 (1560)
T PTZ00243 1313 GVQMRYREG-LPLVLRGVSFR-IAPREKVGIVG-RTGSGKSTL-LLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSM 1388 (1560)
T ss_pred EEEEEeCCC-CCceeecceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceE
Confidence 678999753 35699999999 99999999999 999999999 6778888877 36677888899999844
Q ss_pred cCCCcccccC-------C--CCCchh---HHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC-
Q psy17517 79 QNQSAQAFLG-------P--ENPEEP---YLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP- 138 (163)
Q Consensus 79 q~~~~~~~~~-------~--~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~- 138 (163)
..|+..+|.+ + +..+++ +++.+++.. +.+....+.+.+||||||||++|||||+ ++
T Consensus 1389 VpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL----~~~ 1464 (1560)
T PTZ00243 1389 IPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALL----KKG 1464 (1560)
T ss_pred ECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHh----cCC
Confidence 4444455521 1 222233 444444411 1123345667899999999999999994 74
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|++||||||||+||+++.+.|.+.
T Consensus 1465 ~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1465 SGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHH
Confidence 899999999999999999998765
No 241
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-29 Score=201.46 Aligned_cols=144 Identities=18% Similarity=0.185 Sum_probs=99.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--cc--ccc-------cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--AT--IRS-------LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~--i~~-------~~~~~ 71 (163)
+.+|.|+. +++++++||+ |.+||+++|+| +|||||||| ++++.|+.. + +. +.+ .+..+
T Consensus 9 ~l~~~~~~---~~~l~~~sl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 9 DVHLSYGN---YEALHGISLD-FEEKELTALIG-PSGCGKSTF-LRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eeEEEECC---eeeeeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 67888863 5799999999 99999999999 999999999 667777764 2 21 111 12233
Q ss_pred HHHhc--cccCCCccccc---------CCC----CCc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GPE----NPE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .+|. ... ... .++++.+++........++++.+|||||+||++|||
T Consensus 83 ~~~~i~~~~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 83 LRKEVGMVFQQP--TPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred hhccEEEEecCC--ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 45555 44443 2321 000 000 112333343110113457789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.+.|
T Consensus 161 al~----~~p~llllDEP~~~LD~~~~~~l~~~l 190 (251)
T PRK14251 161 ALA----VRPKVVLLDEPTSALDPISSSEIEETL 190 (251)
T ss_pred HHh----cCCCEEEecCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887653
No 242
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.96 E-value=3e-29 Score=212.04 Aligned_cols=147 Identities=24% Similarity=0.296 Sum_probs=115.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+..|..|+ ..+++++++||+ +.+||.++||| ||||||||| -+++.|.++| .+++.|+.+++-++++|
T Consensus 339 ~l~~~PPg-~~~pil~~isF~-l~~G~~lgIIG-PSgSGKSTL-aR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGY 414 (580)
T COG4618 339 RLTAAPPG-QKKPILKGISFA-LQAGEALGIIG-PSGSGKSTL-ARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGY 414 (580)
T ss_pred eeeecCCC-CCCcceecceeE-ecCCceEEEEC-CCCccHHHH-HHHHHcccccCCCcEEecchhhhcCCHHHhccccCc
Confidence 34454554 468999999999 99999999999 999999999 5667888877 36788999999999988
Q ss_pred cCCCccccc----------CCCCCchhHHHhchhccc----------CCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 79 QNQSAQAFL----------GPENPEEPYLQGVNYNCV----------APGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 79 q~~~~~~~~----------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
..|+-++|. ..+...+.+++...+... -+.....-...|||||||||++|||| +.+
T Consensus 415 LPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl----YG~ 490 (580)
T COG4618 415 LPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL----YGD 490 (580)
T ss_pred CcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH----cCC
Confidence 888777873 233333444444333221 13345566789999999999999999 699
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|.+++||||-|+||.+.+.-+.+.
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHHHH
Confidence 999999999999999998877653
No 243
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-29 Score=207.76 Aligned_cols=146 Identities=21% Similarity=0.223 Sum_probs=102.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--cc-------cc--ccCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--AT-------IR--SLGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~-------i~--~~~~~~ 71 (163)
+.+|.|+.. ..++|+|+||+ |.+||+++|+| +|||||||| ++++.++.. | +. +. ......
T Consensus 85 nls~~y~~~-~~~~L~~is~~-I~~Ge~v~IvG-~~GsGKSTL-l~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~ 160 (329)
T PRK14257 85 NFNFWYMNR-TKHVLHDLNLD-IKRNKVTAFIG-PSGCGKSTF-LRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLE 160 (329)
T ss_pred eeEEEecCC-CceeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEccccccchHh
Confidence 678889642 35799999999 99999999999 999999999 566777764 2 21 21 122235
Q ss_pred HHHhc--cccCCCcccc---------cCCC---CCch--------hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAF---------LGPE---NPEE--------PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~---------~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|.| .+| +.+. ...+ .+++.+++........++++.+||||||||++|||
T Consensus 161 lr~~i~~v~q~~--~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 161 LRTRIGMVFQKP--TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred hhccEEEEecCC--ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence 56666 56655 222 1110 0011 12344443211134567889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.+...+.+.|
T Consensus 239 Al~----~~p~IlLLDEPts~LD~~~~~~i~~~i 268 (329)
T PRK14257 239 AIA----LEPEVLLMDEPTSALDPIATAKIEELI 268 (329)
T ss_pred HHH----hCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 995 789999999999999999999887653
No 244
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-29 Score=197.30 Aligned_cols=136 Identities=21% Similarity=0.221 Sum_probs=99.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+++|.|+. .. .+|||+ |.+||+++|+| ||||||||| ++++.++..| + ++...+. .++.+
T Consensus 6 ~l~~~~~~---~~--~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 6 DITWLYHH---LP--MRFDLT-VERGERVAILG-PSGAGKSTL-LNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred EEEEEECC---cc--ceeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 67888863 22 399999 99999999999 999999999 6778888776 2 1222221 13344
Q ss_pred cccCCCccccc----------CC-CC---C------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL----------GP-EN---P------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~----------~~-~~---~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|.+ .++. .. .. . ..++++.+++ .+..++++.+||||||||++||||++
T Consensus 76 ~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~---- 145 (232)
T PRK10771 76 LFQEN--NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGI----EDLLARLPGQLSGGQRQRVALARCLV---- 145 (232)
T ss_pred Eeccc--ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCc----HHHHhCCcccCCHHHHHHHHHHHHHh----
Confidence 44443 2221 10 00 0 1224555565 56788999999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l 172 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLV 172 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999998887653
No 245
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=200.75 Aligned_cols=144 Identities=20% Similarity=0.266 Sum_probs=100.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc-------cc-------cc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-------TI-------RS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-------~i-------~~--~~~~~ 71 (163)
+.+|.|++ +++++|+||+ |.+||+++|+| ||||||||| ++++.++..|. .+ .. .....
T Consensus 9 ~l~~~~~~---~~il~~~s~~-i~~G~~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 9 GVNFFYHK---HQVLKNINMD-FPERQITAIIG-PSGCGKSTL-LRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred EEEEEECC---eeEecceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 67888863 5699999999 99999999999 999999999 67778877642 21 11 11234
Q ss_pred HHHhc--cccCCCccccc---------CCC----CCc---hh----HHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GPE----NPE---EP----YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~~----~~~---~~----~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .++. ... ... +. +++.+++.....+..++++.+||||||||++|||
T Consensus 83 ~~~~i~~v~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 160 (251)
T PRK14249 83 LRKRVGMVFQQP--NPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIAR 160 (251)
T ss_pred hhceEEEEecCC--ccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 45555 55554 2221 000 000 01 1222333111123567889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.++|
T Consensus 161 al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 190 (251)
T PRK14249 161 VLA----IEPEVILMDEPCSALDPVSTMRIEELM 190 (251)
T ss_pred HHh----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887653
No 246
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.5e-29 Score=192.39 Aligned_cols=137 Identities=17% Similarity=0.201 Sum_probs=95.1
Q ss_pred ccceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc--c--cc--ccccCH-HHHHHhccc
Q psy17517 7 SAQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR--I--AT--IRSLGL-EDLRSMALA 78 (163)
Q Consensus 7 ~~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~--~--~~--i~~~~~-~~~~~~~~~ 78 (163)
.+.+|.|+... ++++++++||+ +++||+++|+| ||||||||| ++++.++.. + .. +.+.+. ..+++.+.+
T Consensus 7 ~~l~~~~~~~~~~~~~l~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~ 83 (192)
T cd03232 7 KNLNYTVPVKGGKRQLLNNISGY-VKPGTLTALMG-ESGAGKTTL-LDVLAGRKTAGVITGEILINGRPLDKNFQRSTGY 83 (192)
T ss_pred eeeEEEecCCCCceEeEEccEEE-EeCCcEEEEEC-CCCCCHHHH-HHHHhCCCcCCCcceEEEECCEehHHHhhhceEE
Confidence 36788896421 25799999999 99999999999 999999999 666777642 3 22 222222 344555544
Q ss_pred cCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 79 QNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 79 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
..++..++... ...+ .+.+. ... .+|||||+||++|||||+ .+|+++++||||++||+.++..
T Consensus 84 ~~q~~~~~~~~--tv~~---~l~~~----~~~----~~LSgGe~qrv~la~al~----~~p~vlllDEP~~~LD~~~~~~ 146 (192)
T cd03232 84 VEQQDVHSPNL--TVRE---ALRFS----ALL----RGLSVEQRKRLTIGVELA----AKPSILFLDEPTSGLDSQAAYN 146 (192)
T ss_pred ecccCccccCC--cHHH---HHHHH----HHH----hcCCHHHhHHHHHHHHHh----cCCcEEEEeCCCcCCCHHHHHH
Confidence 44433333221 1112 11110 000 189999999999999996 7899999999999999999999
Q ss_pred HHhhC
Q psy17517 159 VASYI 163 (163)
Q Consensus 159 i~~~l 163 (163)
+.+.|
T Consensus 147 l~~~l 151 (192)
T cd03232 147 IVRFL 151 (192)
T ss_pred HHHHH
Confidence 88753
No 247
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.96 E-value=7.2e-30 Score=200.36 Aligned_cols=131 Identities=24% Similarity=0.268 Sum_probs=93.4
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHH--HHHHhccccCCCc---------ccc
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLE--DLRSMALAQNQSA---------QAF 86 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~--~~~~~~~~q~~~~---------~~~ 86 (163)
++++||+ |.+||+++|+| ||||||||| ++++.++.+| +. +.+.+.. ..+..+++|.+.. ..+
T Consensus 1 l~~is~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLT-IQQGEFISLIG-HSGCGKSTL-LNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 5799999 99999999999 999999999 6778888776 21 1211111 0112345665410 001
Q ss_pred c-C---CCCC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHH
Q psy17517 87 L-G---PENP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTN 155 (163)
Q Consensus 87 ~-~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~ 155 (163)
. . .... ..++++.+++ .+..++++.+||||||||++|||+|+ .+|+++||||||++||+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGL----TEAADKRPGQLSGGMKQRVAIARALS----IRPKVLLLDEPFGALDALT 149 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCC----HHHHcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCCcCCCHHH
Confidence 0 0 0000 1224555565 56678889999999999999999996 7899999999999999999
Q ss_pred HHHHHhhC
Q psy17517 156 IGKVASYI 163 (163)
Q Consensus 156 ~~~i~~~l 163 (163)
+..+.+.|
T Consensus 150 ~~~l~~~l 157 (230)
T TIGR01184 150 RGNLQEEL 157 (230)
T ss_pred HHHHHHHH
Confidence 99987753
No 248
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.8e-29 Score=193.37 Aligned_cols=140 Identities=14% Similarity=0.201 Sum_probs=98.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHHHH-HHhc--cccC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLEDL-RSMA--LAQN 80 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~~~-~~~~--~~q~ 80 (163)
+.++.|+. ..+++ +||+ |++||+++|+| +|||||||| ++++.++.+| +. +.+.+.... ++.+ ++|.
T Consensus 6 ~l~~~~~~---~~l~~-vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 6 QLQFNIEQ---KNLFD-LSIT-FLPSAITYIKG-ANGCGKSSL-LRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred EeeEEECC---cEEEE-EEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence 56778853 44555 9999 99999999999 999999999 6778888776 22 222222122 1223 3333
Q ss_pred CCc---------ccccCC----CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecc
Q psy17517 81 QSA---------QAFLGP----ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEI 147 (163)
Q Consensus 81 ~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP 147 (163)
+.. ..+... ....+.+++.+++ .+..++++.+||||||||++||||++ .+|++++||||
T Consensus 79 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~~rl~la~al~----~~p~~lllDEP 150 (195)
T PRK13541 79 LGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKL----HDLLDEKCYSLSSGMQKIVAIARLIA----CQSDLWLLDEV 150 (195)
T ss_pred cCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCC----HhhhccChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCC
Confidence 210 000000 0111234555565 56678889999999999999999996 78999999999
Q ss_pred cCCCCHHHHHHHHhh
Q psy17517 148 DAALDNTNIGKVASY 162 (163)
Q Consensus 148 ts~LD~~~~~~i~~~ 162 (163)
|++||+.++..+.++
T Consensus 151 ~~~LD~~~~~~l~~~ 165 (195)
T PRK13541 151 ETNLSKENRDLLNNL 165 (195)
T ss_pred cccCCHHHHHHHHHH
Confidence 999999999988765
No 249
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.96 E-value=3e-29 Score=199.40 Aligned_cols=141 Identities=21% Similarity=0.242 Sum_probs=100.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc------ccc--cccCH--HHHH-Hhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI------ATI--RSLGL--EDLR-SMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~------~~i--~~~~~--~~~~-~~~ 76 (163)
+.+|.| + .++++|+||+ |.+||+++|+| +|||||||| ++++.|+.+| +.+ .+.+. .+.+ +.+
T Consensus 9 ~l~~~~-~---~~il~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 9 NIALQA-A---QPLVHGVSLT-LQRGRVLALVG-GSGSGKSLT-CAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred CeEEEe-c---cceecceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 667788 2 4799999999 99999999999 999999999 6777887654 222 22111 1222 334
Q ss_pred --cccCCCccccc---------------CCCCC---chhHHHhchhcccCCC---ccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 77 --LAQNQSAQAFL---------------GPENP---EEPYLQGVNYNCVAPG---KRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 77 --~~q~~~~~~~~---------------~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
++|++...+.. +.... ..++++.+++ .+ ..++++.+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~~LS~Gq~qrv~laral~- 156 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL----ENAARVLKLYPFEMSGGMLQRMMIALALL- 156 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCC----CChhhhhhcCCcccCHHHHHHHHHHHHHh-
Confidence 56654211110 00000 1224555555 33 467889999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.+.|
T Consensus 157 ---~~p~lLlLDEPt~~LD~~~~~~l~~~L 183 (254)
T PRK10418 157 ---CEAPFIIADEPTTDLDVVAQARILDLL 183 (254)
T ss_pred ---cCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence 789999999999999999998887653
No 250
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=7.1e-30 Score=202.56 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=94.5
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--cccCHHHHHHhccccCCCcccccCCCCCch
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSLGLEDLRSMALAQNQSAQAFLGPENPEE 94 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 94 (163)
..|++||||+ |.+||++++|| +|||||||+. +++.++..| +.+ .+.+...+. -.....+..
T Consensus 26 v~avd~Vsf~-i~~ge~~glVG-ESG~GKSTlg-r~i~~L~~pt~G~i~f~g~~i~~~~------------~~~~~~~v~ 90 (268)
T COG4608 26 VKAVDGVSFS-IKEGETLGLVG-ESGCGKSTLG-RLILGLEEPTSGEILFEGKDITKLS------------KEERRERVL 90 (268)
T ss_pred eEEecceeEE-EcCCCEEEEEe-cCCCCHHHHH-HHHHcCcCCCCceEEEcCcchhhcc------------hhHHHHHHH
Confidence 4799999999 99999999999 9999999994 667777776 222 222211111 000112234
Q ss_pred hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 95 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++++.+++ ..+...+++++|||||+||++|||||+ -+|+++++|||+|+||...+.++.+++
T Consensus 91 elL~~Vgl---~~~~~~ryPhelSGGQrQRi~IARALa----l~P~liV~DEpvSaLDvSiqaqIlnLL 152 (268)
T COG4608 91 ELLEKVGL---PEEFLYRYPHELSGGQRQRIGIARALA----LNPKLIVADEPVSALDVSVQAQILNLL 152 (268)
T ss_pred HHHHHhCC---CHHHhhcCCcccCchhhhhHHHHHHHh----hCCcEEEecCchhhcchhHHHHHHHHH
Confidence 56777775 356889999999999999999999997 469999999999999999999888753
No 251
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.9e-29 Score=216.75 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=102.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-c--c-------cccccCH-HHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-I--A-------TIRSLGL-EDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-~--~-------~i~~~~~-~~~~~~~ 76 (163)
++++.|+.+++.++++||||+ |++||+++|+| ||||||||| ++++.++.+ | + ++..... ..++..+
T Consensus 264 ~l~~~~~~~~~~~vl~~vsl~-i~~Ge~~~l~G-~NGsGKSTL-lk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 340 (506)
T PRK13549 264 NLTAWDPVNPHIKRVDDVSFS-LRRGEILGIAG-LVGAGRTEL-VQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGI 340 (506)
T ss_pred cCccccccccccccccceeeE-EcCCcEEEEeC-CCCCCHHHH-HHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCC
Confidence 566777532345799999999 99999999999 999999999 677778765 3 2 2221222 2234444
Q ss_pred --cccCCC-cccc----------cC----CC-----CC------chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHH
Q psy17517 77 --LAQNQS-AQAF----------LG----PE-----NP------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAAL 127 (163)
Q Consensus 77 --~~q~~~-~~~~----------~~----~~-----~~------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvai 127 (163)
++|++. ..++ +. .. .. ..++++.+++ . ...++++.+||||||||++|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 341 AMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV----KTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred EEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc----cCCCcccccccCCHHHHHHHHH
Confidence 556532 1111 00 00 00 1124555555 4 46788999999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||+ .+|+++||||||++||+.++..+.++|
T Consensus 417 A~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 448 (506)
T PRK13549 417 AKCLL----LNPKILILDEPTRGIDVGAKYEIYKLI 448 (506)
T ss_pred HHHHh----hCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence 99996 789999999999999999999987753
No 252
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.6e-29 Score=199.32 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=100.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc--c-----c-------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR--I-----A-------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~--~-----~-------~i~~--~~~~~ 71 (163)
+.+|.|+. .++++|+||+ |.+||+++|+| +|||||||| ++++.++.. | + ++.. .....
T Consensus 9 nl~~~~~~---~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 9 QLNVHFGK---NHAVKDVSMD-FPENSVTAIIG-PSGCGKSTV-LRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred EEEEEeCC---eeEEecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 67788863 5799999999 99999999999 999999999 667777753 1 2 1211 12234
Q ss_pred HHHhc--cccCCCccccc----------C--C-CC-Cc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL----------G--P-EN-PE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~----------~--~-~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiA 128 (163)
+++.+ ++|++ .++. . . .. .. .++++.+++.....+..+..+.+||||||||++||
T Consensus 83 ~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 83 IRRRVGMVFQKP--NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred hhccEEEEecCC--CCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 45555 55554 2221 0 0 00 00 12333444411112345678999999999999999
Q ss_pred HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 129 LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 129 raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||+ .+|+++||||||++||+.++..+.+.|
T Consensus 161 ral~----~~p~llllDEP~~gLD~~~~~~l~~~l 191 (252)
T PRK14256 161 RTIA----VKPEVILMDEPASALDPISTLKIEELI 191 (252)
T ss_pred HHHh----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 9995 789999999999999999999887753
No 253
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.4e-29 Score=197.83 Aligned_cols=136 Identities=21% Similarity=0.142 Sum_probs=101.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.++.|+. ++++|+||+ |.+||+++|+| +|||||||| ++++.++.+| + ++...+. .++.+
T Consensus 5 ~l~~~~~~----~~l~~is~~-i~~Ge~~~i~G-~nG~GKStL-l~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 5 NLSKDWKE----FKLKNVSLE-VERGDYFVILG-PTGSGKSVL-LETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred eEEEEeCC----ceeeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 46778853 389999999 99999999999 999999999 6778888777 2 2222222 23344
Q ss_pred cccCCCcccccC------------CC-CC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLG------------PE-NP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~------------~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+|.. .. .. ..++++.+++ .+..++++.+|||||+||++|||||+
T Consensus 76 ~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrl~laral~---- 145 (235)
T cd03299 76 VPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI----DHLLNRKPETLSGGEQQRVAIARALV---- 145 (235)
T ss_pred EeecC--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----hhHHhcCcccCCHHHHHHHHHHHHHH----
Confidence 44443 23310 00 00 0124555565 66778899999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|++++|||||++||+.++..+.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~ 171 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREE 171 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHH
Confidence 78999999999999999999988765
No 254
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=200.30 Aligned_cols=144 Identities=22% Similarity=0.247 Sum_probs=99.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc---ccc----c-------ccccc--CHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI---HRI----A-------TIRSL--GLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l---~~~----~-------~i~~~--~~~~ 71 (163)
+.++.|+. .++++|+||+ |.+||+++|+| ||||||||| ++++.|+ .++ + ++... +...
T Consensus 8 ~~~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 8 DVNFWYGD---FHALKGISME-IEEKSVVAFIG-PSGCGKSTF-LRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEECC---EeEEeeeeEE-EeCCCEEEEEC-CCCCCHHHH-HHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 56788853 5799999999 99999999999 999999999 5666664 221 2 12211 1234
Q ss_pred HHHhc--cccCCCccccc---------C--CC---CC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G--PE---NP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~--~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .++. . .. .. .+++++.+++.....+..++++.+||||||||++|||
T Consensus 82 ~~~~i~~v~q~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14245 82 LRKNVGMVFQRP--NPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIAR 159 (250)
T ss_pred HhhheEEEecCC--ccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHH
Confidence 45555 55554 2221 0 00 00 0123444444111123457889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+ .+|+++||||||++||+.++..+.+.|
T Consensus 160 al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 189 (250)
T PRK14245 160 AMA----VSPSVLLMDEPASALDPISTAKVEELI 189 (250)
T ss_pred HHh----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999988753
No 255
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=205.33 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=100.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--cc-------ccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--AT-------IRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~-------i~~--~~~~~ 71 (163)
+.+|.|+. .++|+|+||+ |.+||+++|+| ||||||||| ++++.++.. | +. +.. .+...
T Consensus 44 ~l~~~~~~---~~il~~is~~-i~~Ge~~~I~G-~nGsGKSTL-l~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 117 (285)
T PRK14254 44 DLNVFYGD---EQALDDVSMD-IPENQVTAMIG-PSGCGKSTF-LRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA 117 (285)
T ss_pred EEEEEECC---EeeEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccCCcccCCCCceEEEECCEEccccccchHh
Confidence 56788853 5799999999 99999999999 999999999 677777764 2 21 211 12234
Q ss_pred HHHhc--cccCCCcccccC--------------CCC----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFLG--------------PEN----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
+++++ ++|++ .+|.. ... ..+++++.+++.....+..++++.+||||||||++|||||
T Consensus 118 ~~~~i~~v~q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL 195 (285)
T PRK14254 118 LRRRIGMVFQKP--NPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAI 195 (285)
T ss_pred hhccEEEEecCC--ccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 45555 55554 22210 000 0012333444310011345788999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.++|
T Consensus 196 ~----~~p~lLLLDEPts~LD~~~~~~l~~~L 223 (285)
T PRK14254 196 A----PDPEVILMDEPASALDPVATSKIEDLI 223 (285)
T ss_pred H----cCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 6 789999999999999999999887653
No 256
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.96 E-value=2.1e-29 Score=198.43 Aligned_cols=138 Identities=23% Similarity=0.210 Sum_probs=101.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+.+|.|+. +++++|+||+ +.+||+++|+| ||||||||| ++++.++.+| + ++...+ ..++.+
T Consensus 5 ~l~~~~~~---~~il~~is~~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~ 76 (237)
T TIGR00968 5 NISKRFGS---FQALDDVNLE-VPTGSLVALLG-PSGSGKSTL-LRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGF 76 (237)
T ss_pred EEEEEECC---eeeeeeEEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEE
Confidence 56788863 5799999999 99999999999 999999999 6777888766 2 122222 223344
Q ss_pred cccCCCcccccC----------CC---CC-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLG----------PE---NP-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~----------~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|.+ .+|.. .. .. ..++++.+++ .+..++.+..||+||+||++|||+|+
T Consensus 77 ~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~lS~G~~qrl~laral~---- 146 (237)
T TIGR00968 77 VFQHY--ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL----EGLGDRYPNQLSGGQRQRVALARALA---- 146 (237)
T ss_pred EecCh--hhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCC----HhHhhCChhhCCHHHHHHHHHHHHHh----
Confidence 44443 23311 00 00 0124455555 56678889999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|++++|||||++||+.++..+.+.|
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l 173 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWL 173 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887753
No 257
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=218.21 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=104.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc-------ccccCH-HHHHHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT-------IRSLGL-EDLRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~-------i~~~~~-~~~~~~~- 76 (163)
+.++.|++ .++++|+||+ +++||+++|+| ||||||||| ++++.++.+| +. +...+. ..+++++
T Consensus 9 ~l~~~~~~---~~il~~isl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 9 GIGKTFPG---VKALDDISFD-CRAGQVHALMG-ENGAGKSTL-LKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eeEEEECC---EEEEeeeeEE-EeCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 57788853 5799999999 99999999999 999999999 6778888766 22 222222 2344445
Q ss_pred -cccCCCcccc----------cCC--C--C---------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 77 -LAQNQSAQAF----------LGP--E--N---------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 77 -~~q~~~~~~~----------~~~--~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++|++. ++ +.. . . ...++++.+++ ....++++.+||||||||++|||||+
T Consensus 83 ~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 83 IIYQELH--LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV----DIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred EEEechh--ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCC----CCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 555541 21 110 0 0 01225566666 56678899999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 157 ----~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (501)
T PRK11288 157 ----RNARVIAFDEPTSSLSAREIEQLFRVI 183 (501)
T ss_pred ----hCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 258
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=200.77 Aligned_cols=144 Identities=18% Similarity=0.185 Sum_probs=99.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------cc--cccc-------CHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------AT--IRSL-------GLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~--i~~~-------~~~~ 71 (163)
+++|.|++ .++++++||+ |.+||+++|+| ||||||||| ++++.++..+ +. +.+. +...
T Consensus 8 ~l~~~~~~---~~~l~~i~~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 8 NFSAYYGE---KKAVKNVTMK-IFKNQITAIIG-PSGCGKTTL-LRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eeEEEeCC---ceeEeeeeEe-ecCCCEEEEEC-CCCCCHHHH-HHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 56788863 5799999999 99999999999 999999999 6677777541 21 1111 1123
Q ss_pred HHHhc--cccCCCccccc-----------CCC--CCc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL-----------GPE--NPE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~-----------~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .++. ... ... +++++.+++........++++.+|||||+||++|||
T Consensus 82 ~~~~i~~~~q~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 82 YRKKVGMVFQKP--TPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred hhhhEEEEecCC--ccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 44555 55544 2221 000 000 112333343111112467889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|++++|||||++||+.++..+.++|
T Consensus 160 al~----~~p~llllDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14262 160 ALA----VEPEVILLDEPTSALDPIATQRIEKLL 189 (250)
T ss_pred HHh----CCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 259
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=198.83 Aligned_cols=144 Identities=20% Similarity=0.258 Sum_probs=99.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------cc-------ccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------AT-------IRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~-------i~~--~~~~~ 71 (163)
+++|.|++ .++++|+||+ |.+||+++|+| +|||||||| ++++.|+..| +. +.. .....
T Consensus 9 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 9 DVNIYYGD---KQAVKNVNLD-VQRGTVNALIG-PSGCGKTTF-LRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred eeEEEECC---EEeeccceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 67888863 5799999999 99999999999 999999999 6777887643 11 111 11224
Q ss_pred HHHhc--cccCCCcccccC-------------CC-CCchh-------HHHhchhcccCCCccCCCCCCCCHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFLG-------------PE-NPEEP-------YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~~-------------~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiA 128 (163)
++..+ ++|++ .++.. .. ...+. +++.+++.....+..++++.+|||||+||++||
T Consensus 83 ~~~~i~~~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 83 MRRRVGMVFQKP--NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred hhceeEEEeccC--ccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 45555 45543 22211 00 01111 112222211112345778999999999999999
Q ss_pred HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 129 LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 129 raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+|+ .+|+++||||||++||+.++..+.+.|
T Consensus 161 ral~----~~p~llllDEP~~~LD~~~~~~l~~~l 191 (252)
T PRK14272 161 RALA----VEPEILLMDEPTSALDPASTARIEDLM 191 (252)
T ss_pred HHHh----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 9996 789999999999999999999887753
No 260
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.96 E-value=2.3e-29 Score=198.20 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=96.3
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccC----HHHHHHhccccC-CCcccccC
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLG----LEDLRSMALAQN-QSAQAFLG 88 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~----~~~~~~~~~~q~-~~~~~~~~ 88 (163)
.+++|+|+||+ |++||+++|+| +|||||||| ++++.++.+| +. +.+.+ ...+++++.+.. +...++..
T Consensus 33 ~~~il~~vs~~-i~~Ge~~~i~G-~NGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFT-IEKGEIVGFIG-PNGAGKTTT-LKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 35799999999 99999999999 999999999 6778888766 22 11111 123444453322 11122210
Q ss_pred ------------CCC-Cc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeeccc
Q psy17517 89 ------------PEN-PE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEID 148 (163)
Q Consensus 89 ------------~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPt 148 (163)
... .. ..+++.+++ .+..+.++..||||||||++|||||+ .+|+++||||||
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDL----EELLDTPVRQLSLGQRMRAEIAAALL----HEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----hhHhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 000 00 123444454 55677889999999999999999996 789999999999
Q ss_pred CCCCHHHHHHHHhhC
Q psy17517 149 AALDNTNIGKVASYI 163 (163)
Q Consensus 149 s~LD~~~~~~i~~~l 163 (163)
++||+.++..+.++|
T Consensus 182 ~~LD~~~~~~l~~~l 196 (236)
T cd03267 182 IGLDVVAQENIRNFL 196 (236)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988753
No 261
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=2.7e-29 Score=199.02 Aligned_cols=142 Identities=20% Similarity=0.175 Sum_probs=98.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc--ccc--c-------cccccCHHHHHH-h
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI--HRI--A-------TIRSLGLEDLRS-M 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l--~~~--~-------~i~~~~~~~~~~-~ 75 (163)
+.+|.|++ .++|+||||+ |.+||+++|+| +|||||||| ++++.++ .+| + ++...+....++ .
T Consensus 12 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 12 NLHASVNE---NEILKGLNLS-INKGEIHAIMG-PNGSGKSTL-SKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeCC---EEeeecceeE-EcCCcEEEEEC-CCCCCHHHH-HHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 56778863 4699999999 99999999999 999999999 5677776 333 2 233333333332 2
Q ss_pred c--cccCCCc--------cc-c-cCC-------CC-C-------chhHHHhchhcccCC-CccCCCCC-CCCHHHHHHHH
Q psy17517 76 A--LAQNQSA--------QA-F-LGP-------EN-P-------EEPYLQGVNYNCVAP-GKRFQPMT-NLSGGEKTVAA 126 (163)
Q Consensus 76 ~--~~q~~~~--------~~-~-~~~-------~~-~-------~~~~~~~~~~~~~~~-~~~~~~~~-~LSgGqkQrva 126 (163)
+ ++|.+.. .+ + ... .. . ..++++.+++ . ...++++. .|||||+||++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGM----DPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCC----chhhhccccccCCCHHHHHHHH
Confidence 3 4454310 00 0 000 00 0 0123444454 3 34567776 59999999999
Q ss_pred HHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 127 LALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 127 iAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||||+ .+|+++||||||++||+.++..+.++|
T Consensus 162 la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l 194 (252)
T CHL00131 162 ILQMAL----LDSELAILDETDSGLDIDALKIIAEGI 194 (252)
T ss_pred HHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 999996 789999999999999999999887753
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=2.9e-29 Score=193.13 Aligned_cols=131 Identities=23% Similarity=0.242 Sum_probs=93.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc--cc--c-------cccccCHHHH-HHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH--RI--A-------TIRSLGLEDL-RSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~--~~--~-------~i~~~~~~~~-~~~ 75 (163)
+.++.|++ .++++|+||+ +.+||+++|+| +|||||||| ++++.++. .| + ++...+.... +..
T Consensus 5 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~i~G-~nGsGKStL-l~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 5 DLHVSVGG---KEILKGVNLT-IKKGEVHALMG-PNGSGKSTL-AKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred EEEEEeCC---EEeeeccceE-ECCCcEEEEEC-CCCCCHHHH-HHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 56788863 5799999999 99999999999 999999999 66677773 34 1 2333333333 233
Q ss_pred ccccCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHH
Q psy17517 76 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTN 155 (163)
Q Consensus 76 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~ 155 (163)
+.+..++..++.. ...++.+ .....+|||||+||++|||+|+ .+|++++|||||++||+.+
T Consensus 79 i~~v~q~~~~~~~--~~~~~~l-------------~~~~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~ 139 (200)
T cd03217 79 IFLAFQYPPEIPG--VKNADFL-------------RYVNEGFSGGEKKRNEILQLLL----LEPDLAILDEPDSGLDIDA 139 (200)
T ss_pred EEEeecChhhccC--ccHHHHH-------------hhccccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHH
Confidence 5443333333311 1111211 1223689999999999999996 7899999999999999999
Q ss_pred HHHHHhhC
Q psy17517 156 IGKVASYI 163 (163)
Q Consensus 156 ~~~i~~~l 163 (163)
+..+.+.|
T Consensus 140 ~~~l~~~L 147 (200)
T cd03217 140 LRLVAEVI 147 (200)
T ss_pred HHHHHHHH
Confidence 99887653
No 263
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=1.8e-29 Score=200.40 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=97.5
Q ss_pred eeCCCCCCCCcccCeeeEeeC-----CCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCC
Q psy17517 11 FLGPENPEEPYLQGVNYNCVA-----PGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQ 81 (163)
Q Consensus 11 f~y~~~~~~~~l~~vsl~~i~-----~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~ 81 (163)
|.||.. .+.+++++|+ +. +||+++|+| ||||||||| ++++.++.+| +.+. ++.. .+ ++|.+
T Consensus 1 ~~y~~~--~~~~~~~~l~-~~~~~i~~Ge~~~i~G-~NGsGKSTL-lk~L~G~~~p~~G~i~-~~g~----~i~~~~q~~ 70 (246)
T cd03237 1 YTYPTM--KKTLGEFTLE-VEGGSISESEVIGILG-PNGIGKTTF-IKMLAGVLKPDEGDIE-IELD----TVSYKPQYI 70 (246)
T ss_pred CCCccc--ccccCcEEEE-EecCCcCCCCEEEEEC-CCCCCHHHH-HHHHhCCCcCCCCeEE-ECCc----eEEEecccc
Confidence 789853 5699999999 86 689999999 999999999 6778888776 2221 1100 23 33332
Q ss_pred Ccc--------c-cc-C-C-C--CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecc
Q psy17517 82 SAQ--------A-FL-G-P-E--NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEI 147 (163)
Q Consensus 82 ~~~--------~-~~-~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP 147 (163)
... + +. . . . ....++++.+++ .+..++++.+||||||||++|||||+ .+|+++|||||
T Consensus 71 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l----~~~~~~~~~~LSgGe~qrv~iaraL~----~~p~llllDEP 142 (246)
T cd03237 71 KADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI----EQILDREVPELSGGELQRVAIAACLS----KDADIYLLDEP 142 (246)
T ss_pred cCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC----HHHhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCC
Confidence 110 0 00 0 0 0 012335566666 56678899999999999999999996 78999999999
Q ss_pred cCCCCHHHHHHHHhhC
Q psy17517 148 DAALDNTNIGKVASYI 163 (163)
Q Consensus 148 ts~LD~~~~~~i~~~l 163 (163)
|++||+.++..+.++|
T Consensus 143 t~~LD~~~~~~l~~~l 158 (246)
T cd03237 143 SAYLDVEQRLMASKVI 158 (246)
T ss_pred cccCCHHHHHHHHHHH
Confidence 9999999999887653
No 264
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=200.61 Aligned_cols=145 Identities=21% Similarity=0.269 Sum_probs=99.6
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc--c-----ccc--cc-------cCHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR--I-----ATI--RS-------LGLE 70 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~--~-----~~i--~~-------~~~~ 70 (163)
.+++|.|++ .++++|+||+ |.+||+++|+| ||||||||| ++++.++.. | +.+ .+ .+..
T Consensus 9 ~~l~~~~~~---~~~l~~~s~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 9 SDLSVYYNK---KKALNSVSLD-FYPNEITALIG-PSGSGKSTL-LRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred EeeEEEECC---eeeeeeeeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 367888863 5799999999 99999999999 999999999 667777632 2 211 11 1122
Q ss_pred HHHHhc--cccCCCccccc---------C----CCCCch-------hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHH
Q psy17517 71 DLRSMA--LAQNQSAQAFL---------G----PENPEE-------PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128 (163)
Q Consensus 71 ~~~~~~--~~q~~~~~~~~---------~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiA 128 (163)
.+++.+ ++|++ .+|. . ...... ++++.+++.....+..++++.+||||||||++||
T Consensus 83 ~~~~~i~~v~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 83 DLRKEIGMVFQQP--NPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred hhhhcEEEEecCC--ccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 345555 45554 2221 0 000000 1233333310002345788999999999999999
Q ss_pred HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 129 LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 129 raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||+ .+|+++||||||++||+.++..+.++|
T Consensus 161 ral~----~~p~llllDEPt~~LD~~~~~~l~~~l 191 (252)
T PRK14239 161 RVLA----TSPKIILLDEPTSALDPISAGKIEETL 191 (252)
T ss_pred HHHh----cCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 9996 789999999999999999999987753
No 265
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.96 E-value=3.5e-29 Score=197.75 Aligned_cols=142 Identities=23% Similarity=0.240 Sum_probs=96.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc--cc--c-------cccccCHHHHH-Hh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH--RI--A-------TIRSLGLEDLR-SM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~--~~--~-------~i~~~~~~~~~-~~ 75 (163)
+++|.|++ .++++|+||+ |.+||+++|+| +|||||||| ++++.++. +| + ++...+....+ ..
T Consensus 6 nl~~~~~~---~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 6 DLHVSVED---KAILRGLNLE-VRPGEVHAIMG-PNGSGKSTL-SATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred EEEEEeCC---eeeeecceeE-EcCCCEEEEEC-CCCCCHHHH-HHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 56788863 5799999999 99999999999 999999999 67788874 34 2 22223333333 23
Q ss_pred c--cccCCCc------cccc--CCCC-----C----c--------hhHHHhchhcccCCCccCCCCC-CCCHHHHHHHHH
Q psy17517 76 A--LAQNQSA------QAFL--GPEN-----P----E--------EPYLQGVNYNCVAPGKRFQPMT-NLSGGEKTVAAL 127 (163)
Q Consensus 76 ~--~~q~~~~------~~~~--~~~~-----~----~--------~~~~~~~~~~~~~~~~~~~~~~-~LSgGqkQrvai 127 (163)
+ ++|++.. ..+. ...+ . . .++++.+++ +.+..++.+. .||||||||++|
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM---PEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC---ChhhcccCCCCCCCHHHHHHHHH
Confidence 4 4554410 0110 0000 0 0 012222232 1234455564 799999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
||||+ ++|++++|||||++||+.++..+.+.
T Consensus 157 aral~----~~p~illLDEPt~~LD~~~~~~l~~~ 187 (248)
T PRK09580 157 LQMAV----LEPELCILDESDSGLDIDALKIVADG 187 (248)
T ss_pred HHHHH----cCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 99996 78999999999999999999988764
No 266
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-29 Score=201.58 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=100.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--cc--ccc-------cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--AT--IRS-------LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~--i~~-------~~~~~ 71 (163)
+.+|.|+ ++++|+|+||+ +.+||+++|+| ||||||||| ++++.|+.. + +. +.+ .+...
T Consensus 25 nl~~~~~---~~~il~~vsl~-i~~Ge~~~I~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 25 DLHVYYG---KKEAIKGIDMQ-FEKNKITALIG-PSGSGKSTY-LRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred eEEEEEC---CeeeEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 5678885 36799999999 99999999999 999999999 566777764 2 21 111 12234
Q ss_pred HHHhc--cccCCCccccc---------CCC---CCc--------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GPE---NPE--------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|.+ .+|. ... ... .++++.+++........++++.+|||||+||++|||
T Consensus 99 ~~~~i~~v~q~~--~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lar 176 (267)
T PRK14237 99 MRKHIGMVFQRP--NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR 176 (267)
T ss_pred HhcceEEEecCC--ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHH
Confidence 45555 45443 2221 000 000 112334443100023467889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|++++|||||++||+.++..+.++|
T Consensus 177 al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 206 (267)
T PRK14237 177 AIA----VKPDILLMDEPASALDPISTMQLEETM 206 (267)
T ss_pred HHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 267
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=6.9e-29 Score=188.38 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=87.3
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH-HHHHHhc--cccCCC-ccccc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL-EDLRSMA--LAQNQS-AQAFL 87 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~-~~~~~~~--~~q~~~-~~~~~ 87 (163)
+++++||+ +++||+++|+| ||||||||| ++++.++.+| + ++...+. ..+++++ ++|++. ..++.
T Consensus 15 ~l~~vs~~-i~~G~~~~i~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFE-VRAGEIVGIAG-LVGNGQTEL-AEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 89999999 99999999999 999999999 7778888876 1 2333332 2334445 444432 12221
Q ss_pred CCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 88 GPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.. ...+.+.+ .. .||||||||++|||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 92 ~~-----t~~e~l~~----~~-------~LS~G~~qrl~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l 147 (182)
T cd03215 92 DL-----SVAENIAL----SS-------LLSGGNQQKVVLARWLA----RDPRVLILDEPTRGVDVGAKAEIYRLI 147 (182)
T ss_pred CC-----cHHHHHHH----Hh-------hcCHHHHHHHHHHHHHc----cCCCEEEECCCCcCCCHHHHHHHHHHH
Confidence 11 12222222 00 19999999999999995 789999999999999999999988753
No 268
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=201.91 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=99.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--cc-------cc--ccCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--AT-------IR--SLGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~-------i~--~~~~~~ 71 (163)
+++|.|+. .++++|+||+ |.+||+++|+| +|||||||| ++++.++.. + +. +. ..+..+
T Consensus 15 ~v~~~~~~---~~il~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 15 NLNVYYGS---FLAVKNVWLD-IPKNQITAFIG-PSGCGKSTI-LRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eeEEEECC---EEEeecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 56788853 4799999999 99999999999 999999999 666777643 1 21 21 112334
Q ss_pred HHHhc--cccCCCccccc---------CCC--C---Cc-h---hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GPE--N---PE-E---PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~~--~---~~-~---~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
+++++ ++|++ .+|. ... . .. + .+++.+++........++++.+||||||||++|||||
T Consensus 89 ~~~~i~~v~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 89 VRRRIGMVFQKP--NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HhhhEEEEccCC--ccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 55555 55543 2221 100 0 00 0 1223333311012345778999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.++|
T Consensus 167 ~----~~p~lllLDEPt~~LD~~~~~~l~~~L 194 (264)
T PRK14243 167 A----VQPEVILMDEPCSALDPISTLRIEELM 194 (264)
T ss_pred h----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 6 789999999999999999999887753
No 269
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=204.54 Aligned_cols=144 Identities=19% Similarity=0.161 Sum_probs=99.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--cc--ccccC-------HHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--AT--IRSLG-------LED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~--i~~~~-------~~~ 71 (163)
+++|.|++ .++++|+||+ |.+||+++|+| ||||||||| ++++.|+.. | +. +.+.+ ...
T Consensus 44 ~l~~~~~~---~~il~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-l~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~ 117 (286)
T PRK14275 44 NFSIYYGE---FEAVKKVNAD-ILSKYVTAIIG-PSGCGKSTF-LRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117 (286)
T ss_pred eeEEEECC---EEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence 56788853 4699999999 99999999999 999999999 677777632 2 21 11111 123
Q ss_pred HHHhc--cccCCCcccc---------cC-----CCCCc------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAF---------LG-----PENPE------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~---------~~-----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++++ ++|++ .++ +. ..... .++++.+++.....+..++++..||||||||++|||
T Consensus 118 ~~~~i~~v~q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 195 (286)
T PRK14275 118 LRKKIGMVFQKP--NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR 195 (286)
T ss_pred hhhcEEEECCCC--CCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence 45555 45554 222 10 00000 123333343111124557889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.+.|
T Consensus 196 aL~----~~p~lllLDEPt~gLD~~~~~~l~~~L 225 (286)
T PRK14275 196 TLA----VEPEILLLDEPTSALDPKATAKIEDLI 225 (286)
T ss_pred HHh----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 270
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=6.2e-30 Score=211.75 Aligned_cols=136 Identities=24% Similarity=0.287 Sum_probs=104.8
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------ccccccCHH---HHHHhc--cccCCCcccc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------ATIRSLGLE---DLRSMA--LAQNQSAQAF 86 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~i~~~~~~---~~~~~~--~~q~~~~~~~ 86 (163)
..++++|||+ +.+||.+++|| +||||||||.++++..+... .++...+.. -+|+++ |||+|...+.
T Consensus 300 ~~AVd~isl~-L~~gqTlGlVG-ESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 300 LRAVDGISLT-LRRGQTLGLVG-ESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred eEEeccceeE-ecCCCeEEEEe-cCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 4699999999 99999999999 99999999966654444332 345545444 346665 9999965554
Q ss_pred cC---------------CC-------CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 87 LG---------------PE-------NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 87 ~~---------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
.. +. .+..++++++|++ ...+++||.++|||||||+|||||++ -+|++++|
T Consensus 378 PRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLD---p~~r~RYPhEFSGGQRQRIAIARAli----LkP~~i~L 450 (534)
T COG4172 378 PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLD---PATRNRYPHEFSGGQRQRIAIARALI----LKPELILL 450 (534)
T ss_pred cccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCC---hhHhhcCCcccCcchhhHHHHHHHHh----cCCcEEEe
Confidence 21 00 0112367778873 46789999999999999999999996 56999999
Q ss_pred ecccCCCCHHHHHHHHhhC
Q psy17517 145 DEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~l 163 (163)
|||||+||..-+.++.++|
T Consensus 451 DEPTSALD~SVQaQvv~LL 469 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLL 469 (534)
T ss_pred cCCchHhhHHHHHHHHHHH
Confidence 9999999999999988764
No 271
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=5.3e-29 Score=190.94 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=95.6
Q ss_pred cceeeCCCC---CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc--cc--cc--ccccCH--HHHHHhc
Q psy17517 8 AQAFLGPEN---PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH--RI--AT--IRSLGL--EDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~---~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~--~~--~~--i~~~~~--~~~~~~~ 76 (163)
+++|.|+.. ...++++++||+ +++||+++|+| ||||||||| ++++.++. +| +. +.+.+. ..+++.+
T Consensus 8 ~ls~~~~~~~~~~~~~~l~~~~~~-i~~Ge~~~l~G-~nGsGKStL-l~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i 84 (194)
T cd03213 8 NLTVTVKSSPSKSGKQLLKNVSGK-AKPGELTAIMG-PSGAGKSTL-LNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84 (194)
T ss_pred eeEEEEecCCCcccccceecceEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCceEEEECCEeCchHhhhheE
Confidence 678888642 125799999999 99999999999 999999999 67778887 66 22 222221 2345555
Q ss_pred cccCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 77 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 77 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
.+..++..++... . +.+.+.+. .. ...|||||+||++|||||+ .+|+++||||||++||+.++
T Consensus 85 ~~~~q~~~~~~~~--t---~~~~i~~~----~~----~~~LS~G~~qrv~laral~----~~p~illlDEP~~~LD~~~~ 147 (194)
T cd03213 85 GYVPQDDILHPTL--T---VRETLMFA----AK----LRGLSGGERKRVSIALELV----SNPSLLFLDEPTSGLDSSSA 147 (194)
T ss_pred EEccCcccCCCCC--c---HHHHHHHH----HH----hccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcCCCHHHH
Confidence 4433333333211 1 11222110 00 1189999999999999996 78999999999999999999
Q ss_pred HHHHhhC
Q psy17517 157 GKVASYI 163 (163)
Q Consensus 157 ~~i~~~l 163 (163)
..+.+.|
T Consensus 148 ~~l~~~l 154 (194)
T cd03213 148 LQVMSLL 154 (194)
T ss_pred HHHHHHH
Confidence 9887753
No 272
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-29 Score=200.43 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=99.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc--c-----ccc--cc-------cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR--I-----ATI--RS-------LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~--~-----~~i--~~-------~~~~~ 71 (163)
+.+|.|+. .++++|+||+ |++||+++|+| +|||||||| ++++.|+.. | +.+ .+ .+...
T Consensus 17 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 17 GMNLWYGQ---HHALKNINLS-IPENEVTAIIG-PSGCGKSTF-IKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred eEEEEECC---eeeEEeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 67788863 5799999999 99999999999 999999999 566777654 1 221 11 12234
Q ss_pred HHHhc--cccCCCccccc---------CCC--C--Cch-------hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GPE--N--PEE-------PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~~--~--~~~-------~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .+|. ... . ... .+++.+++.....+..++++.+||||||||++|||
T Consensus 91 ~~~~i~~v~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 91 LRKNIGMVFQKG--NPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HhhceEEEecCC--cccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 45555 45543 2221 000 0 001 12333343100013457889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+ ++|+++||||||++||+.++..+.+.|
T Consensus 169 al~----~~p~llllDEPt~~LD~~~~~~l~~~l 198 (259)
T PRK14274 169 ALA----TNPDVLLMDEPTSALDPVSTRKIEELI 198 (259)
T ss_pred HHh----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 273
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.96 E-value=2.1e-29 Score=218.62 Aligned_cols=145 Identities=17% Similarity=0.248 Sum_probs=103.1
Q ss_pred cceeeCCCC--------CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-cc-------ccccCHH-
Q psy17517 8 AQAFLGPEN--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-AT-------IRSLGLE- 70 (163)
Q Consensus 8 ~~~f~y~~~--------~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~~-------i~~~~~~- 70 (163)
++++.|+.. +++++|++|||+ |.+||+++|+| ||||||||| ++++.++.+. +. +...+..
T Consensus 280 ~l~~~~~~~~~~~~~~~~~~~il~~isl~-i~~Ge~~~i~G-~nGsGKSTL-lk~l~Gl~~~~G~i~~~g~~i~~~~~~~ 356 (529)
T PRK15134 280 QLQVAFPIRKGILKRTVDHNVVVKNISFT-LRPGETLGLVG-ESGSGKSTT-GLALLRLINSQGEIWFDGQPLHNLNRRQ 356 (529)
T ss_pred CcEEEeecCccccccccccceeeecceeE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCcCCCCcEEEECCEEccccchhh
Confidence 567788521 135799999999 99999999999 999999999 6667777643 22 2222222
Q ss_pred --HHHHhc--cccCCCccccc----------CC--C----CC------chhHHHhchhcccCC-CccCCCCCCCCHHHHH
Q psy17517 71 --DLRSMA--LAQNQSAQAFL----------GP--E----NP------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKT 123 (163)
Q Consensus 71 --~~~~~~--~~q~~~~~~~~----------~~--~----~~------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQ 123 (163)
.+++++ ++|++...++. .. . .. ..++++.+++ . ...++++.+|||||||
T Consensus 357 ~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~~q 432 (529)
T PRK15134 357 LLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGL----DPETRHRYPAEFSGGQRQ 432 (529)
T ss_pred HHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCC----CHHHHhcCCccCCHHHHH
Confidence 234444 66665212221 00 0 00 1124555555 4 3578899999999999
Q ss_pred HHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 124 VAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 124 rvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+|||||+ .+|+++||||||++||+.++..+.++|
T Consensus 433 rv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l 468 (529)
T PRK15134 433 RIAIARALI----LKPSLIILDEPTSSLDKTVQAQILALL 468 (529)
T ss_pred HHHHHHHHh----CCCCEEEeeCCccccCHHHHHHHHHHH
Confidence 999999996 789999999999999999999988753
No 274
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=200.32 Aligned_cols=145 Identities=21% Similarity=0.253 Sum_probs=99.8
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------c-------ccccc--CHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------A-------TIRSL--GLE 70 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~-------~i~~~--~~~ 70 (163)
.+.+|.|++ +.+|+|+||+ |.+||+++|+| ||||||||| ++++.++..+ + ++... +..
T Consensus 10 ~~l~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 10 KNLNLWYGE---KHALYDITIS-IPKNRVTALIG-PSGCGKSTL-LRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eeeEEEECC---eeeeeeeEEE-ECCCcEEEEEC-CCCCCHHHH-HHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 367888863 5799999999 99999999999 999999999 6677776431 2 12221 223
Q ss_pred HHHHhc--cccCCCcccc---------cCCC-----CCc------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHH
Q psy17517 71 DLRSMA--LAQNQSAQAF---------LGPE-----NPE------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128 (163)
Q Consensus 71 ~~~~~~--~~q~~~~~~~---------~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiA 128 (163)
+.++.+ ++|++ .+| +... ... .++++.+++........++++.+||||||||++||
T Consensus 84 ~~~~~i~~~~q~~--~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 84 ALRRKIGMVFQRP--NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred hhhceEEEEecCC--ccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 444445 45554 232 1100 000 11223333310012345788999999999999999
Q ss_pred HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 129 LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 129 raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+|+ .+|+++||||||++||+.++..+.+.|
T Consensus 162 ral~----~~p~lllLDEP~~gLD~~~~~~l~~~l 192 (253)
T PRK14261 162 RTLA----VNPEVILMDEPCSALDPIATAKIEDLI 192 (253)
T ss_pred HHHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 9996 789999999999999999999887653
No 275
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=200.61 Aligned_cols=144 Identities=18% Similarity=0.170 Sum_probs=100.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--ccc--cccCH-------HH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--ATI--RSLGL-------ED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~i--~~~~~-------~~ 71 (163)
+++|.|++ .++++|+||+ |.+||+++|+| +|||||||| ++++.|+.. | +++ .+.+. ..
T Consensus 10 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~I~G-~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 10 NLNLWYGS---KQILFDINLD-IYKREVTAFIG-PSGCGKSTF-LRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred eEEEEECC---eeeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 67888853 5799999999 99999999999 999999999 667777753 2 221 22121 13
Q ss_pred HHHhc--cccCCCccccc---------C--CCC---C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G--PEN---P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~--~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiA 128 (163)
+++.+ ++|++ .+|. . ... . ..++++.+++........++.+..||||||||++||
T Consensus 84 ~~~~i~~v~q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 84 LRAKVGMVFQKP--NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HhhhEEEEecCc--ccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 45555 55554 2221 0 000 0 012345555410001235678899999999999999
Q ss_pred HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 129 LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 129 raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+|+ .+|+++||||||++||+.++..+.+.|
T Consensus 162 ral~----~~p~llllDEPt~~LD~~~~~~l~~~l 192 (251)
T PRK14244 162 RAIA----VKPTMLLMDEPCSALDPVATNVIENLI 192 (251)
T ss_pred HHHh----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 9996 789999999999999999999887753
No 276
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.96 E-value=4.1e-29 Score=195.87 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=92.8
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc------cc--ccccCHH--HHH-Hhc--cccCCCccccc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI------AT--IRSLGLE--DLR-SMA--LAQNQSAQAFL 87 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~------~~--i~~~~~~--~~~-~~~--~~q~~~~~~~~ 87 (163)
+++|+||+ |++||+++|+| ||||||||| ++++.|+.+| +. +.+.+.. +.+ +.+ ++|++...++.
T Consensus 1 ~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLS-LKRGEVLALVG-ESGSGKSLT-CLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999 99999999999 999999999 6777888764 22 2222221 222 344 55554211110
Q ss_pred ---------------CCCCC-----chhHHHhchhcccCC---CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 88 ---------------GPENP-----EEPYLQGVNYNCVAP---GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 88 ---------------~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
..... ..++++.+++ . ...++.+.+||||||||++|||||+ .+|+++||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~~LS~G~~qrv~laral~----~~p~vllL 149 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGL----PDPEEVLKKYPFQLSGGMLQRVMIALALL----LEPPFLIA 149 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCC----CchHHHHhCChhhcCHHHHHHHHHHHHHh----cCCCEEEE
Confidence 00000 1123444454 3 3567889999999999999999996 78999999
Q ss_pred ecccCCCCHHHHHHHHhh
Q psy17517 145 DEIDAALDNTNIGKVASY 162 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~ 162 (163)
||||++||+.++..+.+.
T Consensus 150 DEPt~~LD~~~~~~l~~~ 167 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKL 167 (230)
T ss_pred cCCccccCHHHHHHHHHH
Confidence 999999999999888765
No 277
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.5e-29 Score=198.10 Aligned_cols=145 Identities=21% Similarity=0.227 Sum_probs=102.4
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccccc---------------ccccCHHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIAT---------------IRSLGLED 71 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~---------------i~~~~~~~ 71 (163)
.+.+++|++ ..+++|+||+ +.+||+++|+| +|||||||| ++++.|+..|.. +...+..+
T Consensus 14 ~~~~~~~~~---~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 14 SRLYLYIND---KAILKDITIK-IPNNSIFGIMG-PSGSGKSTL-LKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred eeEEEecCC---ceeEeceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 356777853 6799999999 99999999999 999999999 678888877621 11123334
Q ss_pred HHHhc--cccCCCcccccC-------------CCC-Cc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFLG-------------PEN-PE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~~-------------~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiA 128 (163)
++.++ ++|.+ .++.. ... .. .++++.+++.....+..+.++..||+|||||++||
T Consensus 88 ~~~~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 165 (257)
T PRK14246 88 LRKEVGMVFQQP--NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165 (257)
T ss_pred HhcceEEEccCC--ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence 55555 45543 22210 000 11 12334444411001345678999999999999999
Q ss_pred HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 129 LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 129 raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||+ .+|+++||||||++||+.++..+.++|
T Consensus 166 ral~----~~P~llllDEPt~~LD~~~~~~l~~~l 196 (257)
T PRK14246 166 RALA----LKPKVLLMDEPTSMIDIVNSQAIEKLI 196 (257)
T ss_pred HHHH----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 9996 789999999999999999999887753
No 278
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.3e-29 Score=221.24 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=103.9
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--cc---------------c
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RS---------------L 67 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~---------------~ 67 (163)
+.++.|+... ..++++||||+ |.+||+++|+| +|||||||| ++++.++..| +.+ .+ .
T Consensus 17 ~l~~~y~~~~~~~~~l~~is~~-v~~Ge~~~lvG-~nGsGKSTL-l~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~ 93 (623)
T PRK10261 17 NLNIAFMQEQQKIAAVRNLSFS-LQRGETLAIVG-ESGSGKSVT-ALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQ 93 (623)
T ss_pred ceEEEecCCCCceeEEEeeEEE-ECCCCEEEEEC-CCCChHHHH-HHHHHcCCCCCCeEEEECCEEeccccccccccccC
Confidence 5677886422 35799999999 99999999999 999999999 6777788765 221 11 1
Q ss_pred CHH---HHH-Hhc--cccCCCccccc----------CCC---C--------CchhHHHhchhcccCCCccCCCCCCCCHH
Q psy17517 68 GLE---DLR-SMA--LAQNQSAQAFL----------GPE---N--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGG 120 (163)
Q Consensus 68 ~~~---~~~-~~~--~~q~~~~~~~~----------~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgG 120 (163)
+.. .++ +++ ++|++...++. ... . +..++++.+++. ......++++.+||||
T Consensus 94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~~~LSgG 172 (623)
T PRK10261 94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP-EAQTILSRYPHQLSGG 172 (623)
T ss_pred CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC-ChhhHHhCCCccCCHH
Confidence 212 223 234 77775322221 000 0 011245555551 0013468899999999
Q ss_pred HHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 121 EKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 121 qkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||||+|||||+ .+|++|||||||++||+.++.++.++|
T Consensus 173 q~QRv~iA~AL~----~~P~lLllDEPt~~LD~~~~~~l~~ll 211 (623)
T PRK10261 173 MRQRVMIAMALS----CRPAVLIADEPTTALDVTIQAQILQLI 211 (623)
T ss_pred HHHHHHHHHHHh----CCCCEEEEeCCCCccCHHHHHHHHHHH
Confidence 999999999996 789999999999999999999888753
No 279
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=200.48 Aligned_cols=144 Identities=22% Similarity=0.247 Sum_probs=100.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------c-------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------A-------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~-------~i~~--~~~~~ 71 (163)
+++|.|++ .++++|+||+ |.+||+++|+| +|||||||| ++++.++..+ + ++.. .....
T Consensus 12 ~l~~~~~~---~~il~~isl~-i~~Ge~~~l~G-~nGsGKSTL-lk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 12 DLSFYYNT---SKAIEGISMD-IYRNKVTAIIG-PSGCGKSTF-IKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred EEEEEECC---eEeecceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 67788853 5799999999 99999999999 999999999 6667776542 1 1111 12234
Q ss_pred HHHhc--cccCCCccccc---------C--CC---C--Cc----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G--PE---N--PE----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~--~~---~--~~----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
++.++ ++|++ .+|. . .. . .. .++++.+++.....+..++++.+||||||||++|||
T Consensus 86 ~~~~i~~v~q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 86 LRRQIGMVFQRP--NPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred hhhheEEEeccc--ccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 45555 45544 2221 0 00 0 00 112333333111123567889999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.+.|
T Consensus 164 al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 193 (259)
T PRK14260 164 ALA----IKPKVLLMDEPCSALDPIATMKVEELI 193 (259)
T ss_pred HHh----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 995 789999999999999999999887753
No 280
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.96 E-value=6.1e-29 Score=197.19 Aligned_cols=132 Identities=19% Similarity=0.243 Sum_probs=96.6
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-c-------cccccCHHHHHHhc--cccCCCccc-----
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-A-------TIRSLGLEDLRSMA--LAQNQSAQA----- 85 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~-------~i~~~~~~~~~~~~--~~q~~~~~~----- 85 (163)
+|+|+||+ |.+||+++|+| ||||||||| ++++.++.++ + ++...+..++++.+ ++|.+....
T Consensus 11 ~l~~vsl~-i~~Gei~~l~G-~nGsGKSTL-l~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAE-VRAGEILHLVG-PNGAGKSTL-LARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 79999999 99999999999 999999999 6677777654 1 23333444555544 555531110
Q ss_pred ----ccCCC--CC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC-------CCCEEEeec
Q psy17517 86 ----FLGPE--NP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH-------PAPFFVLDE 146 (163)
Q Consensus 86 ----~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~-------~p~lllLDE 146 (163)
+.... .. ..++++.+++ .+..++++..||||||||++|||||+ . +|+++||||
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~la~al~----~~~~~~~p~p~llllDE 159 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGL----DDKLGRSVNQLSGGEWQRVRLAAVVL----QVWPDINPAGQLLLLDE 159 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCC----HhHhcCCcccCCHHHHHHHHHHHHHh----ccccccCCCCCEEEEcC
Confidence 11111 01 1235556666 56678899999999999999999996 4 579999999
Q ss_pred ccCCCCHHHHHHHHhhC
Q psy17517 147 IDAALDNTNIGKVASYI 163 (163)
Q Consensus 147 Pts~LD~~~~~~i~~~l 163 (163)
||++||+.++..+.++|
T Consensus 160 Pt~~LD~~~~~~l~~~L 176 (248)
T PRK03695 160 PMNSLDVAQQAALDRLL 176 (248)
T ss_pred CcccCCHHHHHHHHHHH
Confidence 99999999999887753
No 281
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.1e-29 Score=201.28 Aligned_cols=144 Identities=21% Similarity=0.240 Sum_probs=99.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--ccc--cc-------cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--ATI--RS-------LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~i--~~-------~~~~~ 71 (163)
+.+|.|+. .++++|+||+ |.+||+++|+| +|||||||| ++++.|+.. | +.+ .+ .....
T Consensus 29 ~l~~~~~~---~~il~~vsl~-i~~Ge~~~I~G-~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 29 NLNLWYGE---DHALKNINLD-IHENEVTAIIG-PSGCGKSTY-IKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred eeEEEECC---cceeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 56788863 5799999999 99999999999 999999999 566777654 3 221 11 12234
Q ss_pred HHHhc--cccCCCccccc---------C--C-CCCc----hh----HHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G--P-ENPE----EP----YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~--~-~~~~----~~----~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .+|. . . .... +. +++.+++.....+..++++.+||||||||++|||
T Consensus 103 ~~~~i~~v~q~~--~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 103 LRTNVGMVFQKP--NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HhhhEEEEecCC--ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 45555 45554 2221 0 0 0000 01 1122211001123457789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+ .+|+++||||||++||+.++..+.++|
T Consensus 181 aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l 210 (271)
T PRK14238 181 CLA----IEPDVILMDEPTSALDPISTLKVEELV 210 (271)
T ss_pred HHH----cCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 996 789999999999999999999988753
No 282
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3e-29 Score=202.00 Aligned_cols=144 Identities=23% Similarity=0.243 Sum_probs=100.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------cc-------cccc-CHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------AT-------IRSL-GLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~-------i~~~-~~~~~ 72 (163)
+++|.|++ .++++|+||+ |++||+++|+| +|||||||| ++++.++..| +. +... ....+
T Consensus 26 nl~~~~~~---~~il~~vs~~-i~~Ge~~~I~G-~nGsGKSTL-l~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 26 NLTLGFAG---KTVLDQVSMG-FPARAVTSLMG-PTGSGKTTF-LRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred eEEEEECC---EEEeeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 57788863 5799999999 99999999999 999999999 6677777652 11 2211 12244
Q ss_pred HHhc--cccCCCccccc---------C--CC--CCch-------hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 73 RSMA--LAQNQSAQAFL---------G--PE--NPEE-------PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 73 ~~~~--~~q~~~~~~~~---------~--~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
++++ ++|.+ .+|. . .. .... ++++.+++.....+..++.+.+|||||+||++|||+
T Consensus 100 ~~~i~~v~q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 100 RRRVGMLFQRP--NPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred hhheEEeccCC--ccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 5555 55544 2221 0 00 0111 123444441111124567899999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ .+|+++||||||++||+.+++.+.+.|
T Consensus 178 l~----~~p~lllLDEPt~~LD~~~~~~l~~~L 206 (276)
T PRK14271 178 LA----VNPEVLLLDEPTSALDPTTTEKIEEFI 206 (276)
T ss_pred Hh----cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 96 789999999999999999999887653
No 283
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.96 E-value=3.3e-29 Score=216.94 Aligned_cols=140 Identities=21% Similarity=0.220 Sum_probs=101.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc--cc--ccc--c----------------
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH--RI--ATI--R---------------- 65 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~--~~--~~i--~---------------- 65 (163)
+.++.|++ +++++|+||+ +.+||+++|+| ||||||||| ++++.++. .| +.+ .
T Consensus 5 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~iiG-~nGsGKSTL-l~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 5 NLTKKFDG---KEVLKNISFT-IEEGEVLGILG-RSGAGKSVL-MHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred EEEEEECC---eEeeeceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 56788853 5799999999 99999999999 999999999 67777774 34 221 1
Q ss_pred -------cc------------CH---HHHHHhc--cccCCCccccc---------------CCCC-----CchhHHHhch
Q psy17517 66 -------SL------------GL---EDLRSMA--LAQNQSAQAFL---------------GPEN-----PEEPYLQGVN 101 (163)
Q Consensus 66 -------~~------------~~---~~~~~~~--~~q~~~~~~~~---------------~~~~-----~~~~~~~~~~ 101 (163)
+. .. ..+++.+ ++|++.. ++. .... +..++++.++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA-LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccc-cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 00 01 1234444 5664211 110 0000 1123556666
Q ss_pred hcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 102 YNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+ .+..++++.+|||||||||+|||||+ .+|+++||||||++||+.++..+.++
T Consensus 158 l----~~~~~~~~~~LSgGq~qrv~iA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 158 L----SHRITHIARDLSGGEKQRVVLARQLA----KEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred C----hhhhhcCcccCCHHHHHHHHHHHHHh----cCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 6 66778899999999999999999996 78999999999999999999998764
No 284
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.96 E-value=4.2e-29 Score=216.32 Aligned_cols=143 Identities=20% Similarity=0.166 Sum_probs=102.8
Q ss_pred cceeeCCC--CCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cccc---c--------cC---H
Q psy17517 8 AQAFLGPE--NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIR---S--------LG---L 69 (163)
Q Consensus 8 ~~~f~y~~--~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~---~--------~~---~ 69 (163)
++++.|+. .++.++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| +.+. + .. .
T Consensus 284 ~l~~~~~~~~~~~~~il~~is~~-i~~Ge~~~l~G-~NGsGKSTL-l~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~ 360 (520)
T TIGR03269 284 NVSKRYISVDRGVVKAVDNVSLE-VKEGEIFGIVG-TSGAGKTTL-SKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGR 360 (520)
T ss_pred ccEEEeccCCCCCceEEeeEEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEEecCCccccccccchhhH
Confidence 56788863 1235799999999 99999999999 999999999 6778888766 2221 1 11 1
Q ss_pred HHHHHhc--cccCCCccccc------------CCC-CC------chhHHHhchhcccCCC-----ccCCCCCCCCHHHHH
Q psy17517 70 EDLRSMA--LAQNQSAQAFL------------GPE-NP------EEPYLQGVNYNCVAPG-----KRFQPMTNLSGGEKT 123 (163)
Q Consensus 70 ~~~~~~~--~~q~~~~~~~~------------~~~-~~------~~~~~~~~~~~~~~~~-----~~~~~~~~LSgGqkQ 123 (163)
..+++++ ++|++ .++. ... .. ..++++.+++ .+ ..++++.+|||||||
T Consensus 361 ~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 361 GRAKRYIGILHQEY--DLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGF----DEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred HHHhhhEEEEccCc--ccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC----CCccchhhhhCChhhCCHHHHH
Confidence 1234445 55554 2221 000 00 1124555555 32 468899999999999
Q ss_pred HHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 124 VAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 124 rvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|++|||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 435 rv~laral~----~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 435 RVALAQVLI----KEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred HHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 999999996 789999999999999999999988753
No 285
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=6e-29 Score=214.34 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=101.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---ccc--cc-----cCH-HHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---ATI--RS-----LGL-EDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---~~i--~~-----~~~-~~~~~~~ 76 (163)
+.++.|+++++.++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| +.+ .+ ... ..+++++
T Consensus 262 ~l~~~~~~~~~~~~l~~is~~-i~~Ge~~~l~G-~NGsGKSTL-l~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (500)
T TIGR02633 262 NLTCWDVINPHRKRVDDVSFS-LRRGEILGVAG-LVGAGRTEL-VQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338 (500)
T ss_pred CCcccccccccccccccceeE-EeCCcEEEEeC-CCCCCHHHH-HHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCC
Confidence 445567432245799999999 99999999999 999999999 6777787653 222 11 111 2344555
Q ss_pred --cccCCC-cccc----------cC----CC-----CC------chhHHHhchhcccCCC-ccCCCCCCCCHHHHHHHHH
Q psy17517 77 --LAQNQS-AQAF----------LG----PE-----NP------EEPYLQGVNYNCVAPG-KRFQPMTNLSGGEKTVAAL 127 (163)
Q Consensus 77 --~~q~~~-~~~~----------~~----~~-----~~------~~~~~~~~~~~~~~~~-~~~~~~~~LSgGqkQrvai 127 (163)
++|++. ..++ +. .. .. ...+++.+++ .. ..++++.+||||||||++|
T Consensus 339 ~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 339 AMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV----KTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred EEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCc----cCCCccCccccCCHHHHHHHHH
Confidence 555531 0111 00 00 00 1124555555 43 5788999999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
||||+ .+|+++||||||++||+.++..+.++
T Consensus 415 a~al~----~~p~lllLDEPt~~LD~~~~~~l~~~ 445 (500)
T TIGR02633 415 AKMLL----TNPRVLILDEPTRGVDVGAKYEIYKL 445 (500)
T ss_pred HHHHh----hCCCEEEEcCCCCCcCHhHHHHHHHH
Confidence 99996 78999999999999999999988764
No 286
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=9.8e-29 Score=190.30 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=96.8
Q ss_pred cceeeCCCCCC--CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCC-
Q psy17517 8 AQAFLGPENPE--EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQS- 82 (163)
Q Consensus 8 ~~~f~y~~~~~--~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~- 82 (163)
++++.|++..+ .++++++||+ |++||+++|+| ||||||||| ++++.++.+| +.+.-.. +-.+++|++.
T Consensus 5 ~l~~~~~~~~~~~~~il~~~s~~-i~~G~~~~i~G-~nG~GKSTL-l~~i~G~~~~~~G~i~~~g----~i~~~~q~~~l 77 (204)
T cd03250 5 DASFTWDSGEQETSFTLKDINLE-VPKGELVAIVG-PVGSGKSSL-LSALLGELEKLSGSVSVPG----SIAYVSQEPWI 77 (204)
T ss_pred EEEEecCCCCccccceeeeeeEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCcCCCCCCeEEEcC----EEEEEecCchh
Confidence 67888864211 3699999999 99999999999 999999999 6778888876 2222001 1112455541
Q ss_pred ------cccccCCCCCc---hhHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeec
Q psy17517 83 ------AQAFLGPENPE---EPYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE 146 (163)
Q Consensus 83 ------~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDE 146 (163)
.++.+...... .+..+.+++.. ......+..+..||+|||||++|||||+ .+|++++|||
T Consensus 78 ~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~----~~p~llllDE 153 (204)
T cd03250 78 QNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY----SDADIYLLDD 153 (204)
T ss_pred ccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeC
Confidence 11111111111 12222222200 1123456678999999999999999996 7899999999
Q ss_pred ccCCCCHHHHHHHHh
Q psy17517 147 IDAALDNTNIGKVAS 161 (163)
Q Consensus 147 Pts~LD~~~~~~i~~ 161 (163)
||++||+.++..+.+
T Consensus 154 P~~~LD~~~~~~l~~ 168 (204)
T cd03250 154 PLSAVDAHVGRHIFE 168 (204)
T ss_pred ccccCCHHHHHHHHH
Confidence 999999999887765
No 287
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-29 Score=201.02 Aligned_cols=144 Identities=20% Similarity=0.156 Sum_probs=99.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------cc--cccc-------CHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------AT--IRSL-------GLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~--i~~~-------~~~~ 71 (163)
++++.|+. .++++++||+ |.+||+++|+| ||||||||| ++++.++..+ +. +.+. ....
T Consensus 25 nl~~~~~~---~~~l~~vs~~-i~~Ge~~~IiG-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~ 98 (274)
T PRK14265 25 GVKVFYGG---FLALVDVHLK-IPAKKIIAFIG-PSGCGKSTL-LRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98 (274)
T ss_pred eEEEEeCC---eEEEeeeeeE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence 56778853 4799999999 99999999999 999999999 6677776531 21 1111 1223
Q ss_pred HHHhc--cccCCCccccc---------CCC--CC---c----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GPE--NP---E----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~~--~~---~----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
+++++ ++|++ .+|. ... .. . ...++.+++.....+..++++.+||||||||++|||||
T Consensus 99 ~~~~i~~v~q~~--~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 176 (274)
T PRK14265 99 LRRQVGMVFQRP--NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAI 176 (274)
T ss_pred HhhcEEEEccCC--ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 45555 55554 2221 000 00 0 11223333211112346788999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ .+|+++||||||++||+.++..+.++|
T Consensus 177 ~----~~p~lllLDEPt~~LD~~~~~~l~~~L 204 (274)
T PRK14265 177 A----MKPDVLLMDEPCSALDPISTRQVEELC 204 (274)
T ss_pred h----hCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 6 789999999999999999999988753
No 288
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5e-29 Score=197.57 Aligned_cols=144 Identities=21% Similarity=0.215 Sum_probs=99.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------c-------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------A-------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~-------~i~~--~~~~~ 71 (163)
+.++.|+. .++++|+||+ |.+||+++|+| +|||||||| ++++.|+..| + ++.. .....
T Consensus 9 ~l~~~~~~---~~~l~~isl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 9 NLNLWYGE---KQALNDINLP-IYENKITALIG-PSGCGKSTF-LRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EeEEEECC---eeeeeceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 56778853 5799999999 99999999999 999999999 6667776532 2 1211 11223
Q ss_pred HHHhc--cccCCCccccc---------CC--C-C-Cc-------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------GP--E-N-PE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~~--~-~-~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .+|. .. . . .. .++++.+++........++++.+||||||||++|||
T Consensus 83 ~~~~i~~~~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 83 LRKRVGMVFQKP--NPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHhheEEEecCC--CcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 45555 55554 2221 00 0 0 00 123444443111123467789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+ .+|+++||||||++||+.++..+.+.|
T Consensus 161 al~----~~p~llllDEP~~~LD~~~~~~l~~~L 190 (251)
T PRK14270 161 TIA----VKPDVILMDEPTSALDPISTLKIEDLM 190 (251)
T ss_pred HHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 289
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.1e-29 Score=197.72 Aligned_cols=143 Identities=23% Similarity=0.240 Sum_probs=99.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--------------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--------------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--------------~i~~--~~~~~ 71 (163)
+.+|.|+. ..+++|+||+ +++||+++|+| +|||||||| ++++.++.++. ++.. .+...
T Consensus 12 nl~~~~~~---~~il~~is~~-i~~Ge~~~I~G-~nGsGKSTL-l~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 12 NLSFYYDT---QKILEGVSME-IYQSKVTAIIG-PSGCGKSTF-LKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred eEEEEeCC---eeEeeceEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 67788853 4699999999 99999999999 999999999 67788887651 1111 11223
Q ss_pred HHHhc--cccCCCccccc--------------CCCCC-c-----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL--------------GPENP-E-----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~--------------~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .+|. ..... . .++++.+++.....+..++++.+|||||+||++|||
T Consensus 86 ~~~~i~~~~q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 86 LRRQVSMVHPKP--NLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred hhccEEEEecCC--ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 45555 44443 2221 00000 0 113334443111123457888999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|+ .+|+++||||||++||+.++..+.+.
T Consensus 164 al~----~~p~vllLDEP~~~LD~~~~~~l~~~ 192 (261)
T PRK14258 164 ALA----VKPKVLLMDEPCFGLDPIASMKVESL 192 (261)
T ss_pred HHh----cCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 996 78999999999999999999988765
No 290
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3e-29 Score=196.01 Aligned_cols=140 Identities=21% Similarity=0.214 Sum_probs=113.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHh-c-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSM-A- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~-~- 76 (163)
+.+-+|. +..|++||||+ +.+||++++|| ||||||||+ .+++.|++.| .++..++..++.+. +
T Consensus 9 ~l~k~FG---Gl~Al~~Vsl~-v~~Gei~~LIG-PNGAGKTTl-fNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 9 GLSKRFG---GLTAVNDVSLE-VRPGEIVGLIG-PNGAGKTTL-FNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred cceeecC---CEEEEeceeEE-EcCCeEEEEEC-CCCCCceee-eeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 4555664 47899999999 99999999999 999999999 8899999998 46788887776444 4
Q ss_pred -cccCCCccccc----------C------------C-CC--Cc-------hhHHHhchhcccCCCccCCCCCCCCHHHHH
Q psy17517 77 -LAQNQSAQAFL----------G------------P-EN--PE-------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKT 123 (163)
Q Consensus 77 -~~q~~~~~~~~----------~------------~-~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQ 123 (163)
.||++ .+|. + . .. .. +++++.+++ .+..+++..+||+|||+
T Consensus 83 RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL----~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 83 RTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL----GELADRPAGNLSYGQQR 156 (250)
T ss_pred eecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC----chhhcchhhcCChhHhH
Confidence 67776 2221 0 0 00 01 236777888 89999999999999999
Q ss_pred HHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 124 VAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 124 rvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+.|||||| .+|++|+||||.+||.+....++.++|
T Consensus 157 ~LEIArALa----~~P~lLLLDEPaAGln~~e~~~l~~~i 192 (250)
T COG0411 157 RLEIARALA----TQPKLLLLDEPAAGLNPEETEELAELI 192 (250)
T ss_pred HHHHHHHHh----cCCCEEEecCccCCCCHHHHHHHHHHH
Confidence 999999998 679999999999999999999887653
No 291
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.3e-29 Score=197.94 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=98.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc--c-----c-------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR--I-----A-------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~--~-----~-------~i~~--~~~~~ 71 (163)
+++|.|+. +++++|+||+ |.+||+++|+| +|||||||| ++++.++.. | + ++.. .+...
T Consensus 10 ~l~~~~~~---~~~l~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 10 DVHLFYGK---FEALKGIDLD-FNQNEITALIG-PSGCGKSTY-LRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEECC---eeEEecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 67788863 5799999999 99999999999 999999999 667777643 1 2 1211 11223
Q ss_pred HHHhc--cccCCCccccc---------C---CC-CCc----hh---HHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G---PE-NPE----EP---YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~---~~-~~~----~~---~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .++. . .. ... +. .++.+++.....+..++.+.+||||||||++|||
T Consensus 84 ~~~~i~~~~q~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 84 LRKQVGMVFQQP--NPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred hcCeEEEEECCC--ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 44445 45543 2221 0 00 000 11 1223332101123457789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+ .+|+++||||||++||+.++..+.++|
T Consensus 162 al~----~~p~llllDEPt~~LD~~~~~~l~~~l 191 (252)
T PRK14255 162 VLA----VKPDVILLDEPTSALDPISSTQIENML 191 (252)
T ss_pred HHh----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 292
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=197.82 Aligned_cols=144 Identities=20% Similarity=0.228 Sum_probs=99.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--c-------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--A-------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~-------~i~~--~~~~~ 71 (163)
+.+|.|++ .++++|+||+ |++||+++|+| ||||||||| ++++.|+.. | + ++.. .+...
T Consensus 30 nl~~~~~~---~~il~~vs~~-i~~Ge~~~I~G-~nGsGKSTL-l~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~ 103 (272)
T PRK14236 30 NLNLFYGD---KQALFDISMR-IPKNRVTAFIG-PSGCGKSTL-LRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAE 103 (272)
T ss_pred EEEEEECC---eeEeeeEEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhcCCCccCCCCceEEEECCEECcccccCHHH
Confidence 67788853 4799999999 99999999999 999999999 566777754 2 2 2211 12234
Q ss_pred HHHhc--cccCCCccccc---------C--CC---CC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G--PE---NP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~--~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|.+ .+|. . .. .. .+++++.+++.....+..++++.+||||||||++|||
T Consensus 104 ~~~~i~~v~q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 104 LRRRVGMVFQRP--NPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HhccEEEEecCC--ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 45555 45443 2221 0 00 00 0112333333100013457789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.+.|
T Consensus 182 al~----~~p~lllLDEPt~gLD~~~~~~l~~~L 211 (272)
T PRK14236 182 AIA----IEPEVLLLDEPTSALDPISTLKIEELI 211 (272)
T ss_pred HHH----CCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 293
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=9.9e-29 Score=213.00 Aligned_cols=140 Identities=18% Similarity=0.288 Sum_probs=100.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc----cc-------ccccCHHHH-HHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI----AT-------IRSLGLEDL-RSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~----~~-------i~~~~~~~~-~~~ 75 (163)
+.++.|++ .++++||||+ +.+||+++|+| ||||||||| ++++.++.+| +. +...+..+. ++.
T Consensus 6 ~l~~~~~~---~~il~~isl~-i~~Ge~~~liG-~nGsGKSTL-l~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 6 GIVKTFGG---VKALDGIDLE-VRPGECVGLCG-ENGAGKSTL-MKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred eEEEEeCC---eEeecceEEE-EeCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 56788853 5799999999 99999999999 999999999 6677777653 22 222233232 333
Q ss_pred c--cccCCCcccc----------cCCC------CC--------chhHHHhchhcccCCCcc-CCCCCCCCHHHHHHHHHH
Q psy17517 76 A--LAQNQSAQAF----------LGPE------NP--------EEPYLQGVNYNCVAPGKR-FQPMTNLSGGEKTVAALA 128 (163)
Q Consensus 76 ~--~~q~~~~~~~----------~~~~------~~--------~~~~~~~~~~~~~~~~~~-~~~~~~LSgGqkQrvaiA 128 (163)
+ ++|++. ++ +... .. .+++++.+++ .+.. ++++.+||||||||++||
T Consensus 80 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 80 IVIIHQELT--LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQL----DADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred EEEEeeccc--cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCC----CCCcccCchhhCCHHHHHHHHHH
Confidence 4 566542 11 1110 00 1124555555 4443 567999999999999999
Q ss_pred HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 129 LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 129 raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||+ .+|+++||||||++||+.++..+.+.|
T Consensus 154 ~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (500)
T TIGR02633 154 KALN----KQARLLILDEPSSSLTEKETEILLDII 184 (500)
T ss_pred HHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 9996 789999999999999999999988753
No 294
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=6.8e-29 Score=213.56 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=101.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---ccc--c------ccCHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---ATI--R------SLGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---~~i--~------~~~~~~~~~~~ 76 (163)
+.++.|++ ..+|+|+||+ |.+||+++|+| ||||||||| ++++.|+.++ +.+ . ......+++++
T Consensus 265 ~l~~~~~~---~~il~~vsl~-i~~Ge~~~i~G-~NGsGKSTL-l~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 265 NGVVSYND---RPILHNLSWQ-VNPGEHWQIVG-PNGAGKSTL-LSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred ceEEEECC---eeEEeeceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 45677753 4699999999 99999999999 999999999 6667776543 111 1 11222344555
Q ss_pred --cccCCCcc----------cccCC------C---C-----CchhHHHhchhcccCCC-ccCCCCCCCCHHHHHHHHHHH
Q psy17517 77 --LAQNQSAQ----------AFLGP------E---N-----PEEPYLQGVNYNCVAPG-KRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 77 --~~q~~~~~----------~~~~~------~---~-----~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGqkQrvaiAr 129 (163)
++|++... ++... . . ..+++++.+++ .+ ..++++.+||||||||++|||
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGq~qrv~la~ 414 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGI----DKRTADAPFHSLSWGQQRLALIVR 414 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC----chhhccCchhhCCHHHHHHHHHHH
Confidence 44443110 00000 0 0 01234556666 55 778899999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|+++||||||++||+.++..+.++|
T Consensus 415 al~----~~p~lllLDEPt~gLD~~~~~~l~~~L 444 (490)
T PRK10938 415 ALV----KHPTLLILDEPLQGLDPLNRQLVRRFV 444 (490)
T ss_pred HHh----cCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 996 789999999999999999999988753
No 295
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=1.4e-28 Score=233.55 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=112.7
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--------ccccccCHHHHHHhccc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--------~~i~~~~~~~~~~~~~~ 78 (163)
.+++|+|+.+ ..++|+||||+ |++||.++|+| +|||||||| +.++.+++.. .++...+..++|+++.+
T Consensus 1221 ~nVs~~Y~~~-~~~vL~~is~~-I~~GekvaIvG-rSGsGKSTL-l~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~ 1296 (1490)
T TIGR01271 1221 QGLTAKYTEA-GRAVLQDLSFS-VEGGQRVGLLG-RTGSGKSTL-LSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGV 1296 (1490)
T ss_pred EEEEEEeCCC-CcceeeccEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEE
Confidence 3678999753 46899999999 99999999999 999999999 5667777654 35677888899999844
Q ss_pred cCCCcccccC-------C--CCCch---hHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 79 QNQSAQAFLG-------P--ENPEE---PYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 79 q~~~~~~~~~-------~--~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
..|+..+|.+ + +..++ .+++.+++.. +.+....+.+..||||||||++||||| +++|
T Consensus 1297 IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL----Lr~~ 1372 (1490)
T TIGR01271 1297 IPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI----LSKA 1372 (1490)
T ss_pred EeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH----hCCC
Confidence 4444455521 1 11222 2455554421 123344556778999999999999999 5899
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+|||||||+||+.+...|++.|
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L 1396 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTL 1396 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH
Confidence 999999999999999999987653
No 296
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.4e-29 Score=191.70 Aligned_cols=142 Identities=15% Similarity=0.191 Sum_probs=112.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~~ 78 (163)
+++.+|.+ +.+++++|++ |++|++++++| |||+||||| +.++.++... .++.+++..++.+++..
T Consensus 6 nv~K~y~~---~~vl~~isl~-i~~g~iTs~IG-PNGAGKSTL-LS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 6 NVSKSYGT---KVVLDDVSLD-IPKGGITSIIG-PNGAGKSTL-LSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred hhhHhhCC---EEeeccceee-ecCCceeEEEC-CCCccHHHH-HHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 45667753 6899999999 99999999999 999999999 7888888876 36778888888887633
Q ss_pred cCCCcccc----------cC--------CCCCc----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 79 QNQSAQAF----------LG--------PENPE----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 79 q~~~~~~~----------~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
..++|.+. ++ +...+ .++++-+.+ .+..+++..+||||||||.-||..+|
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L----~~l~dryLd~LSGGQrQRAfIAMVla---- 151 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL----EDLSDRYLDELSGGQRQRAFIAMVLA---- 151 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcc----cchHHHhHHhcccchhhhhhhheeee----
Confidence 33322222 11 11111 135666677 88999999999999999999999997
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++.+.++||||.++||.++...+++.|
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~L 178 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKIL 178 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHH
Confidence 889999999999999999999888753
No 297
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.6e-28 Score=212.26 Aligned_cols=133 Identities=14% Similarity=0.236 Sum_probs=97.4
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCH-HHHHHhc--cccCCC-cccc
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGL-EDLRSMA--LAQNQS-AQAF 86 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~-~~~~~~~--~~q~~~-~~~~ 86 (163)
.+++|+||+ |.+||+++|+| ||||||||| ++++.++.+| + ++..... ..+++++ ++|.+. ..++
T Consensus 277 ~~l~~isl~-i~~Ge~~~l~G-~NGsGKSTL-lk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (510)
T PRK09700 277 KKVRDISFS-VCRGEILGFAG-LVGSGRTEL-MNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFF 353 (510)
T ss_pred CcccceeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCc
Confidence 489999999 99999999999 999999999 6778888766 2 2222222 2334445 566421 1121
Q ss_pred ----------cCCC-------------CC------chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 87 ----------LGPE-------------NP------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 87 ----------~~~~-------------~~------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+... .. ..++++.+++ . +..++++.+|||||||||+|||+|+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGq~qrv~lAral~---- 425 (510)
T PRK09700 354 PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL----KCHSVNQNITELSGGNQQKVLISKWLC---- 425 (510)
T ss_pred CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCC----CCCCccCccccCChHHHHHHHHHHHHh----
Confidence 1100 00 0124555555 4 5678999999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 426 ~~p~lLlLDEPt~~LD~~~~~~l~~~l 452 (510)
T PRK09700 426 CCPEVIIFDEPTRGIDVGAKAEIYKVM 452 (510)
T ss_pred cCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 298
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-28 Score=200.55 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=99.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--cc-------ccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--AT-------IRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~~-------i~~--~~~~~ 71 (163)
++++.|++ .++|+++||+ |.+||+++|+| +|||||||| ++++.|+.. | +. +.. .....
T Consensus 50 nl~~~~~~---~~iL~~is~~-i~~Ge~~~IvG-~nGsGKSTL-l~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 50 DLDVYYGD---DHALKGVSMD-IPEKSVTALIG-PSGCGKSTF-LRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred EEEEEeCC---eeeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 56778863 5799999999 99999999999 999999999 566777753 2 21 211 12234
Q ss_pred HHHhc--cccCCCcccc---------cCCC---------------C--Cc------hhHHHhchhcccCCCccCCCCCCC
Q psy17517 72 LRSMA--LAQNQSAQAF---------LGPE---------------N--PE------EPYLQGVNYNCVAPGKRFQPMTNL 117 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~---------~~~~---------------~--~~------~~~~~~~~~~~~~~~~~~~~~~~L 117 (163)
+++++ ++|++. +| +... . .. ..+++.+++.....+..++++.+|
T Consensus 124 ~~~~i~~v~q~~~--l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 201 (305)
T PRK14264 124 LRKRVGMVFQSPN--PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL 201 (305)
T ss_pred HhhceEEEccCCc--cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC
Confidence 45555 555542 21 1100 0 00 112333333101123457789999
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 118 SGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 118 SgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||||||++|||||+ ++|+++||||||++||+.++..+.++|
T Consensus 202 SgGq~qrv~LAraL~----~~p~lLLLDEPtsgLD~~~~~~l~~~L 243 (305)
T PRK14264 202 SGGQQQRLCIARCLA----VDPEVILMDEPASALDPIATSKIEDLI 243 (305)
T ss_pred CHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 999999999999996 789999999999999999999887753
No 299
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=196.14 Aligned_cols=143 Identities=18% Similarity=0.151 Sum_probs=98.6
Q ss_pred ceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------c-------cccc--cCHHHH
Q psy17517 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------A-------TIRS--LGLEDL 72 (163)
Q Consensus 9 ~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~-------~i~~--~~~~~~ 72 (163)
.++.|. +.++++|+||+ +++||+++|+| +|||||||| ++++.|+..| + ++.. .....+
T Consensus 14 ~~~~~~---~~~~l~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 87 (261)
T PRK14263 14 DKIFYG---NFMAVRDSHVP-IRKNEITGFIG-PSGCGKSTV-LRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87 (261)
T ss_pred EEEEeC---CEEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence 456674 35799999999 99999999999 999999999 6677777643 1 1211 112234
Q ss_pred HHhc--cccCCCccccc---------CCC----C-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 73 RSMA--LAQNQSAQAFL---------GPE----N-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 73 ~~~~--~~q~~~~~~~~---------~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++.+ ++|++ .+|. ... . ...++++.+++........++++.+|||||+||++|||||+
T Consensus 88 ~~~i~~v~q~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 88 RRYIGMVFQQP--NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred hhceEEEecCC--ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 5555 45554 2221 000 0 01224444444111112345678999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|+++||||||++||+.++.++.+.|
T Consensus 166 ----~~p~llllDEPtsgLD~~~~~~l~~~l 192 (261)
T PRK14263 166 ----TEPEVLLLDEPCSALDPIATRRVEELM 192 (261)
T ss_pred ----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 300
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=196.11 Aligned_cols=144 Identities=20% Similarity=0.204 Sum_probs=99.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------cc--ccc---------cCH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------AT--IRS---------LGL 69 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~--i~~---------~~~ 69 (163)
+.+|.|+. +++++|+||+ |++||+++|+| +|||||||| ++++.|+..| +. +.+ ...
T Consensus 21 ~l~~~~~~---~~vl~~vs~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 21 KLNFYYGG---YQALKNINMM-VHEKQVTALIG-PSGCGKSTF-LRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred EEEEEECC---eeeeeeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 66788863 4799999999 99999999999 999999999 6677777642 11 111 122
Q ss_pred HHHHHhc--cccCCCccccc---------C-----CCC--C-c---hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHH
Q psy17517 70 EDLRSMA--LAQNQSAQAFL---------G-----PEN--P-E---EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAAL 127 (163)
Q Consensus 70 ~~~~~~~--~~q~~~~~~~~---------~-----~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvai 127 (163)
.++++.+ ++|.+ .+|. . ... . . ..+++.+++.....+..++.+.+|||||+||++|
T Consensus 95 ~~~~~~i~~~~q~~--~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 95 IEVRMRISMVFQKP--NPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred HHHhccEEEEccCC--cCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 3445555 45443 2221 0 000 0 0 1123333321011234567889999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 173 aral~----~~p~llllDEPt~gLD~~~~~~l~~~l 204 (265)
T PRK14252 173 ARALA----TDPEILLFDEPTSALDPIATASIEELI 204 (265)
T ss_pred HHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 99996 789999999999999999999887753
No 301
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-28 Score=205.14 Aligned_cols=147 Identities=24% Similarity=0.313 Sum_probs=114.8
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhcc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMAL 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~~ 77 (163)
.+++|.|.. .+++|+++||+ +++|+.++++| +||+||||+ .+++++++++ .++++.....+|+.+.
T Consensus 266 ~~V~F~y~~--~r~iL~~isf~-i~~g~tvAiVg-~SG~gKsTI-~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 266 INVSFAYDP--RRPILNGISFT-IPLGKTVAIVG-ESGAGKSTI-LRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred EEEEeeccc--cchhhcCcccc-ccCccEEEEEe-CCCCcHHHH-HHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 478899954 68999999999 99999999999 999999999 7888999887 4567777778888886
Q ss_pred ccCCCcccc----------cCCCCCchhHHHhchhc-------ccC---CCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF----------LGPENPEEPYLQGVNYN-------CVA---PGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~----------~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
..+++..+| .++....+++....+.. ..| +....+.+.-|||||||||||||++ ++
T Consensus 341 ~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~i----lk 416 (497)
T COG5265 341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTI----LK 416 (497)
T ss_pred cCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHH----hc
Confidence 666655555 23444444432222211 111 3345677889999999999999999 58
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|++++|||.||+||..+++.++..
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~ 441 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAA 441 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHH
Confidence 9999999999999999999998764
No 302
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=194.38 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=99.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-----c--c-------cccc--cCHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-----I--A-------TIRS--LGLED 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-----~--~-------~i~~--~~~~~ 71 (163)
++++.|++ +++++|+||+ |.+||+++|+| +|||||||| ++++.|+.. + + ++.. .+...
T Consensus 8 ~v~~~~~~---~~~l~~~s~~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 8 NLNTYFDD---AHILKNVNLD-IPKNSVTALIG-PSGCGKSTF-IRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred eEEEEeCC---eEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 56788853 5799999999 99999999999 999999999 566776632 1 2 2221 12234
Q ss_pred HHHhc--cccCCCccccc---------C---CCCCc-h-------hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHH
Q psy17517 72 LRSMA--LAQNQSAQAFL---------G---PENPE-E-------PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 129 (163)
Q Consensus 72 ~~~~~--~~q~~~~~~~~---------~---~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAr 129 (163)
+++.+ ++|++ .+|. . ..... + ++++.+++........++++.+||||||||++|||
T Consensus 82 ~~~~i~~~~q~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 159 (250)
T PRK14266 82 LRKKVGMVFQKP--NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HhhheEEEecCC--ccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence 45555 45544 2221 0 00000 1 12333343111123457789999999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ .+|++++|||||++||+.++..+.++|
T Consensus 160 al~----~~p~llllDEP~~gLD~~~~~~l~~~l 189 (250)
T PRK14266 160 TIA----VSPEVILMDEPCSALDPISTTKIEDLI 189 (250)
T ss_pred HHH----cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 996 789999999999999999999887753
No 303
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=213.06 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=97.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCCc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQSA 83 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~~ 83 (163)
+.+|.|++ +++++|+||+ |.+||+++|+| ||||||||| ++++.++.+| +.+. ++. +.++ ++|.+.
T Consensus 6 ~ls~~~~~---~~il~~vsl~-i~~Ge~~~liG-~NGsGKSTL-l~~l~Gl~~p~~G~i~-~~~---~~~i~~~~q~~~- 74 (530)
T PRK15064 6 NITMQFGA---KPLFENISVK-FGGGNRYGLIG-ANGCGKSTF-MKILGGDLEPSAGNVS-LDP---NERLGKLRQDQF- 74 (530)
T ss_pred EEEEEeCC---cEeEeCCEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEE-ecC---CCEEEEEeccCC-
Confidence 57788853 5799999999 99999999999 999999999 6778888765 2221 000 0112 333220
Q ss_pred ccccC---------------------------C-------------------------CCCchhHHHhchhcccCCCc-c
Q psy17517 84 QAFLG---------------------------P-------------------------ENPEEPYLQGVNYNCVAPGK-R 110 (163)
Q Consensus 84 ~~~~~---------------------------~-------------------------~~~~~~~~~~~~~~~~~~~~-~ 110 (163)
.+.. . ..+...+++.+++ .+. .
T Consensus 75 -~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~ 149 (530)
T PRK15064 75 -AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI----PEEQH 149 (530)
T ss_pred -cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC----ChhHh
Confidence 1100 0 0011224455555 333 3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 111 FQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 111 ~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++++.+||||||||++|||+|+ .+|+++||||||++||+.++..+.++|
T Consensus 150 ~~~~~~LSgGq~qrv~lA~aL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l 198 (530)
T PRK15064 150 YGLMSEVAPGWKLRVLLAQALF----SNPDILLLDEPTNNLDINTIRWLEDVL 198 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCcccCHHHHHHHHHHH
Confidence 5678999999999999999995 789999999999999999999988753
No 304
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.95 E-value=2.1e-28 Score=217.29 Aligned_cols=138 Identities=21% Similarity=0.265 Sum_probs=98.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCC-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQS- 82 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~- 82 (163)
+++|.||+ +.++++|+||+ |++||+++|+| ||||||||| ++++.+++++ +.+. .+ .++++ ++|++.
T Consensus 456 nv~~~~~~--~~~il~~isl~-i~~Ge~~~IvG-~nGsGKSTL-l~lL~Gl~~~~~G~i~-~~---~~~~i~~v~Q~~~l 526 (659)
T TIGR00954 456 NIPLVTPN--GDVLIESLSFE-VPSGNHLLICG-PNGCGKSSL-FRILGELWPVYGGRLT-KP---AKGKLFYVPQRPYM 526 (659)
T ss_pred eeEEECCC--CCeeeecceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCeEe-ec---CCCcEEEECCCCCC
Confidence 56788874 35799999999 99999999999 999999999 6778888876 2222 11 13334 555541
Q ss_pred ------cccccCC--------CCCc---hhHHHhchhcccCCCccC---------CCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 83 ------AQAFLGP--------ENPE---EPYLQGVNYNCVAPGKRF---------QPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 83 ------~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~---------~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+++..+. .... .++++.+++ .+..+ ..+.+||||||||++|||||+
T Consensus 527 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l----~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~---- 598 (659)
T TIGR00954 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL----THILEREGGWSAVQDWMDVLSGGEKQRIAMARLFY---- 598 (659)
T ss_pred CCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC----HHHHhhcCCcccccccccCCCHHHHHHHHHHHHHH----
Confidence 1111111 1111 234555555 22222 235799999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|+++|||||||+||+.++..+.+.
T Consensus 599 ~~p~illLDEpts~LD~~~~~~l~~~ 624 (659)
T TIGR00954 599 HKPQFAILDECTSAVSVDVEGYMYRL 624 (659)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 88999999999999999999988764
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.6e-28 Score=210.94 Aligned_cols=139 Identities=19% Similarity=0.181 Sum_probs=99.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCCc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQSA 83 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~~ 83 (163)
+.++.|++ .++++|+||+ |.+||+++|+| ||||||||| ++++.|+..| +.+. +.. +.++ ++|++..
T Consensus 324 ~l~~~~~~---~~~l~~is~~-i~~Ge~~~l~G-~NGsGKSTL-l~~i~G~~~p~~G~i~-~~~---~~~i~~~~q~~~~ 393 (530)
T PRK15064 324 NLTKGFDN---GPLFKNLNLL-LEAGERLAIIG-ENGVGKTTL-LRTLVGELEPDSGTVK-WSE---NANIGYYAQDHAY 393 (530)
T ss_pred eeEEeeCC---ceeecCcEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEE-ECC---ceEEEEEcccccc
Confidence 45677753 5699999999 99999999999 999999999 6778888766 3332 110 1223 4444321
Q ss_pred ccc-----------cCCCC-C---chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeeccc
Q psy17517 84 QAF-----------LGPEN-P---EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEID 148 (163)
Q Consensus 84 ~~~-----------~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPt 148 (163)
.++ ..... . ...+++.+++. ....++++.+||||||||++|||+|+ .+|+++||||||
T Consensus 394 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGq~qrv~la~al~----~~p~lllLDEPt 466 (530)
T PRK15064 394 DFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS---QDDIKKSVKVLSGGEKGRMLFGKLMM----QKPNVLVMDEPT 466 (530)
T ss_pred cCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC---hhHhcCcccccCHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 111 00001 1 12345555541 24678899999999999999999996 789999999999
Q ss_pred CCCCHHHHHHHHhhC
Q psy17517 149 AALDNTNIGKVASYI 163 (163)
Q Consensus 149 s~LD~~~~~~i~~~l 163 (163)
++||+.++..+.+.|
T Consensus 467 ~~LD~~~~~~l~~~l 481 (530)
T PRK15064 467 NHMDMESIESLNMAL 481 (530)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999888753
No 306
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=4.5e-28 Score=193.32 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=100.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc-------------cccCHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI-------------RSLGLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i-------------~~~~~~~~ 72 (163)
.++|+|+. +..+++|+| . +.+||+++|+| ||||||||| ++++.++.+| +.+ .+.+..++
T Consensus 5 ~~~~~y~~--~~~~l~~i~-~-i~~Ge~~~IvG-~nGsGKSTL-lk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~ 78 (255)
T cd03236 5 EPVHRYGP--NSFKLHRLP-V-PREGQVLGLVG-PNGIGKSTA-LKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY 78 (255)
T ss_pred CcceeecC--cchhhhcCC-C-CCCCCEEEEEC-CCCCCHHHH-HHHHhCCcCCCCceEeeccccchhhhhccCchhhhh
Confidence 46788863 246999999 7 99999999999 999999999 7888888877 333 23222211
Q ss_pred ----HHh---c--cccCCCc--cccc-------CC---CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 73 ----RSM---A--LAQNQSA--QAFL-------GP---ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 73 ----~~~---~--~~q~~~~--~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
++. + ++|.... ..+. .. +....++++.+++ .+..++.+.+||||||||++|||+|
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LS~G~~qrv~laral 154 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL----RHVLDRNIDQLSGGELQRVAIAAAL 154 (255)
T ss_pred hHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHHHH
Confidence 111 1 2232211 0100 00 0112335666666 6667889999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+ .+|++++|||||++||+.++..+.+.
T Consensus 155 ~----~~p~illlDEPts~LD~~~~~~l~~~ 181 (255)
T cd03236 155 A----RDADFYFFDEPSSYLDIKQRLNAARL 181 (255)
T ss_pred H----hCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 6 78999999999999999998887764
No 307
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.95 E-value=6.9e-28 Score=231.28 Aligned_cols=144 Identities=20% Similarity=0.209 Sum_probs=108.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc----CHHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL----GLEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~----~~~~~~~~~~~q 79 (163)
+.++.|+++ ++++++|+||+ +.+||+++|+| ||||||||| ++++.|+..| ++ +.+. ...++|+.+.+.
T Consensus 933 nLsK~y~~~-~k~aL~~lsl~-I~~Gei~aLLG-~NGAGKSTL-LkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~ 1008 (2272)
T TIGR01257 933 NLVKIFEPS-GRPAVDRLNIT-FYENQITAFLG-HNGAGKTTT-LSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC 1008 (2272)
T ss_pred eEEEEecCC-CceEEEeeEEE-EcCCcEEEEEC-CCCChHHHH-HHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEE
Confidence 455678532 46799999999 99999999999 999999999 7888999877 21 2221 234556666433
Q ss_pred CCCccccc---------------CCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 80 NQSAQAFL---------------GPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 80 ~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
.+++.++. +... ..+++++.+++ .+..++++.+||||||||++|||||+ .+|
T Consensus 1009 pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL----~~~~~~~~~~LSGGqKQRLsLArALi----~~P 1080 (2272)
T TIGR01257 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGL----HHKRNEEAQDLSGGMQRKLSVAIAFV----GDA 1080 (2272)
T ss_pred ecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHHHHH----cCC
Confidence 33323331 1100 11235666777 77889999999999999999999996 789
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||++||+.+++.++++|
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL 1104 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLL 1104 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHH
Confidence 999999999999999999998764
No 308
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=8.7e-28 Score=176.45 Aligned_cols=107 Identities=23% Similarity=0.293 Sum_probs=84.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQA 85 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~ 85 (163)
+.++.|++ .++++++||+ +++||+++|+| ||||||||| ++++.++.+| +.+.--. +.
T Consensus 5 ~l~~~~~~---~~~l~~~~~~-~~~Ge~~~i~G-~nGsGKStL-l~~l~G~~~~~~G~i~~~~----~~----------- 63 (144)
T cd03221 5 NLSKTYGG---KLLLKDISLT-INPGDRIGLVG-RNGAGKSTL-LKLIAGELEPDEGIVTWGS----TV----------- 63 (144)
T ss_pred EEEEEECC---ceEEEeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHcCCCCCCceEEEECC----eE-----------
Confidence 56788864 4699999999 99999999999 999999999 6778888765 2221000 00
Q ss_pred ccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 86 FLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+++ +.+||+||+||++|||||+ .+|+++++||||++||+.++..+.+.+
T Consensus 64 -------------~i~~-----------~~~lS~G~~~rv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l 113 (144)
T cd03221 64 -------------KIGY-----------FEQLSGGEKMRLALAKLLL----ENPNLLLLDEPTNHLDLESIEALEEAL 113 (144)
T ss_pred -------------EEEE-----------EccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 1111 0119999999999999996 789999999999999999999988753
No 309
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=4.6e-28 Score=174.96 Aligned_cols=121 Identities=26% Similarity=0.299 Sum_probs=87.7
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhccccCCCcccccCCC--
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMALAQNQSAQAFLGPE-- 90 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~~~q~~~~~~~~~~~-- 90 (163)
|+||||+ |.+||+++|+| +|||||||| ++++.+...+ + ++...+....+..+.+..++..++....
T Consensus 1 L~~v~~~-i~~g~~~~i~G-~nGsGKStL-l~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLE-IKPGEIVAIVG-PNGSGKSTL-LKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEE-EETTSEEEEEE-STTSSHHHH-HHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEE-EcCCCEEEEEc-cCCCccccc-eeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999 99999999999 999999999 6778888876 1 2333334556666644444434442221
Q ss_pred -----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccC
Q psy17517 91 -----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA 149 (163)
Q Consensus 91 -----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts 149 (163)
...+.+++.+++........++++..||+|||||++|||||+ ++|+++||||||+
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~----~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALL----KNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHH----TTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHH----cCCCEEEEeCCCC
Confidence 122346666666332234455566999999999999999995 8899999999996
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=6.8e-28 Score=210.44 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=98.4
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCC
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQS 82 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~ 82 (163)
.+.++.|++ ++++|+||||+ |++||+++|+| ||||||||| ++++.|+..| +.+. +.. ..++ ++|++.
T Consensus 10 ~~l~~~y~~--~~~il~~vs~~-i~~Ge~~~iiG-~NGsGKSTL-lk~i~G~~~p~~G~i~-~~~---~~~i~~v~Q~~~ 80 (556)
T PRK11819 10 NRVSKVVPP--KKQILKDISLS-FFPGAKIGVLG-LNGAGKSTL-LRIMAGVDKEFEGEAR-PAP---GIKVGYLPQEPQ 80 (556)
T ss_pred eeEEEEeCC--CCeeeeCceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEE-ecC---CCEEEEEecCCC
Confidence 367888962 36799999999 99999999999 999999999 7778888766 2321 000 1123 445431
Q ss_pred ccccc----------CC-----------------C-C----------------------------CchhHHHhchhcccC
Q psy17517 83 AQAFL----------GP-----------------E-N----------------------------PEEPYLQGVNYNCVA 106 (163)
Q Consensus 83 ~~~~~----------~~-----------------~-~----------------------------~~~~~~~~~~~~~~~ 106 (163)
++. .. . . +...+++.+++
T Consensus 81 --~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl---- 154 (556)
T PRK11819 81 --LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC---- 154 (556)
T ss_pred --CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC----
Confidence 110 00 0 0 00112333343
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 107 PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 107 ~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
. ..++++.+|||||||||+|||+|+ .+|+++||||||++||+.++..+.++|
T Consensus 155 ~-~~~~~~~~LSgGqkqrv~la~al~----~~p~vlLLDEPt~~LD~~~~~~l~~~L 206 (556)
T PRK11819 155 P-PWDAKVTKLSGGERRRVALCRLLL----EKPDMLLLDEPTNHLDAESVAWLEQFL 206 (556)
T ss_pred C-cccCchhhcCHHHHHHHHHHHHHh----CCCCEEEEcCCCCcCChHHHHHHHHHH
Confidence 2 357889999999999999999995 789999999999999999999887653
No 311
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=206.64 Aligned_cols=133 Identities=19% Similarity=0.296 Sum_probs=95.3
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc-------ccccCHH-HHHHhc--cccCCC-cccc
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT-------IRSLGLE-DLRSMA--LAQNQS-AQAF 86 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~-------i~~~~~~-~~~~~~--~~q~~~-~~~~ 86 (163)
.+++|+||+ |.+||+++|+| ||||||||| ++++.++.+| +. +...... ..++.+ ++|++. ..++
T Consensus 267 ~~l~~isl~-i~~Ge~~~iiG-~NGsGKSTL-lk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFS-VRAGEIVGLFG-LVGAGRSEL-MKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEE-EeCCcEEEEEc-CCCCCHHHH-HHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 489999999 99999999999 999999999 6777888766 22 2212222 223334 555432 1111
Q ss_pred ----------cCCC----------CC------chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 87 ----------LGPE----------NP------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 87 ----------~~~~----------~~------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
.... .. .+++++.+++ . +..++++.+||||||||++|||+|+ .+|
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGq~qrl~la~al~----~~p 415 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNI----KTPSREQLIMNLSGGNQQKAILGRWLS----EDM 415 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCc----ccCCccCccccCCHHHHHHHHHHHHHc----cCC
Confidence 1100 00 0124444554 3 4678899999999999999999995 789
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||++||+.++.+++++|
T Consensus 416 ~lllLDEPt~~LD~~~~~~l~~~l 439 (501)
T PRK11288 416 KVILLDEPTRGIDVGAKHEIYNVI 439 (501)
T ss_pred CEEEEcCCCCCCCHhHHHHHHHHH
Confidence 999999999999999999998753
No 312
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=1.1e-27 Score=207.23 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=96.0
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHH-HHHhc--cccCCC-ccccc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLED-LRSMA--LAQNQS-AQAFL 87 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~-~~~~~--~~q~~~-~~~~~ 87 (163)
++++|||+ |.+||+++|+| ||||||||| ++++.++.+| + ++...+..+ ++.++ ++|.+. ..++.
T Consensus 278 ~l~~isl~-i~~Ge~~~l~G-~NGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLE-VRAGEILGLAG-VVGAGRTEL-AETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEE-EcCCcEEEEEC-CCCCCHHHH-HHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 68999999 99999999999 999999999 6778888766 1 222333332 23345 455421 11110
Q ss_pred C----------------C--CCC-----chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEE
Q psy17517 88 G----------------P--ENP-----EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143 (163)
Q Consensus 88 ~----------------~--~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lll 143 (163)
. . ... .+++++.+++ . ...++++.+||||||||++|||||+ .+|++||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~kqrl~la~al~----~~p~lLl 426 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI----KFNHAEQAARTLSGGNQQKVLIAKCLE----ASPQLLI 426 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCC----CCCCccCccccCCcHHHHHHHHHHHHh----hCCCEEE
Confidence 0 0 000 1124555555 5 5678999999999999999999996 7899999
Q ss_pred eecccCCCCHHHHHHHHhhC
Q psy17517 144 LDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 144 LDEPts~LD~~~~~~i~~~l 163 (163)
|||||++||+.++..+.+.|
T Consensus 427 LDEPt~gLD~~~~~~l~~~l 446 (510)
T PRK15439 427 VDEPTRGVDVSARNDIYQLI 446 (510)
T ss_pred ECCCCcCcChhHHHHHHHHH
Confidence 99999999999999988753
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=205.83 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=96.4
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHH-HHHHhc--cccCCC-cccc
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLE-DLRSMA--LAQNQS-AQAF 86 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~-~~~~~~--~~q~~~-~~~~ 86 (163)
++++|+||+ |.+||+++|+| ||||||||| ++++.++..| + ++...+.. .+++++ ++|++. ..++
T Consensus 266 ~~l~~vsl~-i~~Ge~~~liG-~NGsGKSTL-l~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFT-LRKGEILGVSG-LMGAGRTEL-MKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEE-EcCCcEEEEec-CCCCCHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 368999999 99999999999 999999999 6778888766 2 22222222 234445 556542 1111
Q ss_pred c----------C-C---CC------C------chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 87 L----------G-P---EN------P------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 87 ~----------~-~---~~------~------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
. . . .. . .+++++.+++ . +..++++.+||||||||++|||||+ .+|
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGekqrv~lA~al~----~~p 414 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI----KTPSMEQAIGLLSGGNQQKVAIARGLM----TRP 414 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCC----CCCCccCchhhCCHHHHHHHHHHHHHh----hCC
Confidence 0 0 0 00 0 1124455555 3 4678899999999999999999996 789
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||++||+.++..+.++|
T Consensus 415 ~lllLDEPt~~LD~~~~~~l~~~l 438 (501)
T PRK10762 415 KVLILDEPTRGVDVGAKKEIYQLI 438 (501)
T ss_pred CEEEEcCCCCCCCHhHHHHHHHHH
Confidence 999999999999999999988753
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=1.3e-27 Score=181.25 Aligned_cols=110 Identities=22% Similarity=0.094 Sum_probs=84.2
Q ss_pred cCccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCC
Q psy17517 5 NQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQS 82 (163)
Q Consensus 5 ~~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~ 82 (163)
-|.++++.|.+ .++++++ |+ +++||+++|+| ||||||||| ++++.++..| +.+. ++- ..+.+..+.
T Consensus 2 ~~~~l~~~~~~---~~~l~~~-~~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~-~~g----~~i~~~~q~ 69 (177)
T cd03222 2 LYPDCVKRYGV---FFLLVEL-GV-VKEGEVIGIVG-PNGTGKTTA-VKILAGQLIPNGDNDE-WDG----ITPVYKPQY 69 (177)
T ss_pred CCCCeEEEECC---EEEEccC-cE-ECCCCEEEEEC-CCCChHHHH-HHHHHcCCCCCCcEEE-ECC----EEEEEEccc
Confidence 35688889953 5788885 88 99999999999 999999999 6788888776 2221 000 001110000
Q ss_pred cccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 83 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
. .||||||||++|||+++ .+|++++|||||++||+.++..+.+.
T Consensus 70 -------------------------------~-~LSgGq~qrv~laral~----~~p~lllLDEPts~LD~~~~~~l~~~ 113 (177)
T cd03222 70 -------------------------------I-DLSGGELQRVAIAAALL----RNATFYLFDEPSAYLDIEQRLNAARA 113 (177)
T ss_pred -------------------------------C-CCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHH
Confidence 0 19999999999999996 78999999999999999999988764
No 315
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=5.5e-28 Score=208.04 Aligned_cols=144 Identities=16% Similarity=0.169 Sum_probs=99.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--cccCHHHHHHhccccCC--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSLGLEDLRSMALAQNQ-- 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~~~~~~~~~~~~q~~-- 81 (163)
+.+|.|+.+..+++|+|+||+ |.+||+++|+| ||||||||| ++++.|+.+| +.+ .+.+. .+.....+...
T Consensus 26 nL~~~~~~~~~~~IL~nVSfs-I~~GEivgIiG-pNGSGKSTL-LkiLaGLl~P~sGeI~I~G~~~-~i~~~~~l~~~lT 101 (549)
T PRK13545 26 DLFFRSKDGEYHYALNNISFE-VPEGEIVGIIG-LNGSGKSTL-SNLIAGVTMPNKGTVDIKGSAA-LIAISSGLNGQLT 101 (549)
T ss_pred EEEEecCCCccceEEeeeEEE-EeCCCEEEEEc-CCCCCHHHH-HHHHhCCCCCCceEEEECCEee-eEEeccccCCCCc
Confidence 467788654345799999999 99999999999 999999999 6778888776 222 11110 00000000000
Q ss_pred --Ccccc----cCCCCC-----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCC
Q psy17517 82 --SAQAF----LGPENP-----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA 150 (163)
Q Consensus 82 --~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~ 150 (163)
++..+ ...... ...+++.+++ .+..++++.+||||||||++|||||+ .+|+++||||||++
T Consensus 102 V~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL----~~~ld~~~~~LSGGQrQRVaLArAL~----~~P~LLLLDEPTsg 173 (549)
T PRK13545 102 GIENIELKGLMMGLTKEKIKEIIPEIIEFADI----GKFIYQPVKTYSSGMKSRLGFAISVH----INPDILVIDEALSV 173 (549)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCC----hhHhhCCcccCCHHHHHHHHHHHHHH----hCCCEEEEECCccc
Confidence 11111 011000 1124555565 56778899999999999999999996 78999999999999
Q ss_pred CCHHHHHHHHhhC
Q psy17517 151 LDNTNIGKVASYI 163 (163)
Q Consensus 151 LD~~~~~~i~~~l 163 (163)
||+.++..+.+.|
T Consensus 174 LD~~sr~~LlelL 186 (549)
T PRK13545 174 GDQTFTKKCLDKM 186 (549)
T ss_pred CCHHHHHHHHHHH
Confidence 9999998887653
No 316
>PLN03232 ABC transporter C family member; Provisional
Probab=99.95 E-value=1.4e-27 Score=226.80 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=103.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--cccccCHHHHHHhc--cccCC--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--TIRSLGLEDLRSMA--LAQNQ-- 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~i~~~~~~~~~~~~--~~q~~-- 81 (163)
+.+|.|+..++.++|+|+||+ |++||.++|+| ||||||||| ++++.+.++|. .+. .++.++ +.|+|
T Consensus 619 ~vsF~y~~~~~~~vL~~inl~-i~~Ge~vaIvG-~sGSGKSTL-l~lLlG~~~~~~G~i~-----~~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 619 NGYFSWDSKTSKPTLSDINLE-IPVGSLVAIVG-GTGEGKTSL-ISAMLGELSHAETSSV-----VIRGSVAYVPQVSWI 690 (1495)
T ss_pred eeEEEcCCCCCCceeeeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCcccCCCEE-----EecCcEEEEcCcccc
Confidence 678999864456899999999 99999999999 999999999 67778888762 222 345555 55555
Q ss_pred ------CcccccCCCCCch---hHHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEee
Q psy17517 82 ------SAQAFLGPENPEE---PYLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLD 145 (163)
Q Consensus 82 ------~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLD 145 (163)
+|..|.. ....+ ++++.+++. .+......+++.+||||||||++||||+ +++|++++||
T Consensus 691 f~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl----y~~~~IlLLD 765 (1495)
T PLN03232 691 FNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV----YSNSDIYIFD 765 (1495)
T ss_pred ccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH----hcCCCEEEEc
Confidence 3333322 22222 234444331 1112344567889999999999999999 5899999999
Q ss_pred cccCCCCHHHHHHHHh
Q psy17517 146 EIDAALDNTNIGKVAS 161 (163)
Q Consensus 146 EPts~LD~~~~~~i~~ 161 (163)
||||+||+.+.+++.+
T Consensus 766 EptSaLD~~t~~~I~~ 781 (1495)
T PLN03232 766 DPLSALDAHVAHQVFD 781 (1495)
T ss_pred CCccccCHHHHHHHHH
Confidence 9999999999887754
No 317
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.95 E-value=9e-28 Score=187.69 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=90.7
Q ss_pred eEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c--cccccCHHHHHHhc--cccCCCccc-c---------cCC-
Q psy17517 27 YNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A--TIRSLGLEDLRSMA--LAQNQSAQA-F---------LGP- 89 (163)
Q Consensus 27 l~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~--~i~~~~~~~~~~~~--~~q~~~~~~-~---------~~~- 89 (163)
|+ |++||+++|+| +|||||||| ++++.++.+| + .+.+.+..+.++++ ++|++.... + ...
T Consensus 1 l~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LS-ADKGELLGLLG-PNGAGKTTL-LRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred Cc-cCCCcEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 46 89999999999 999999999 6778888776 2 23333333344445 455442110 0 000
Q ss_pred --------CC-C----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 90 --------EN-P----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 90 --------~~-~----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
.. . ..++++.+++ .+..+.++.+||||||||++|||+|+ ++|+++|+||||++||+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~qrv~laral~----~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGL----TELADRPVGELSGGQRQRVLVARALA----TRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCC----chhhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHH
Confidence 00 0 1124555565 56678889999999999999999996 78999999999999999999
Q ss_pred HHHHhhC
Q psy17517 157 GKVASYI 163 (163)
Q Consensus 157 ~~i~~~l 163 (163)
..+.+.|
T Consensus 150 ~~l~~~l 156 (223)
T TIGR03771 150 ELLTELF 156 (223)
T ss_pred HHHHHHH
Confidence 9988753
No 318
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.6e-27 Score=174.77 Aligned_cols=110 Identities=24% Similarity=0.332 Sum_probs=84.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--cc--cc-----cCHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--TI--RS-----LGLEDLRSMALA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~i--~~-----~~~~~~~~~~~~ 78 (163)
+.+|.|++ .++++++||+ |.+|++++|+| +|||||||| ++++.++.++. .+ .+ ....++++.+
T Consensus 4 ~~~~~~~~---~~~l~~~~~~-i~~g~~~~i~G-~nGsGKStl-l~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i-- 75 (157)
T cd00267 4 NLSFRYGG---RTALDNVSLT-LKAGEIVALVG-PNGSGKSTL-LRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI-- 75 (157)
T ss_pred EEEEEeCC---eeeEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCccEEEECCEEcccCCHHHHHhce--
Confidence 56788864 3799999999 99999999999 999999999 67777777541 11 11 1111111111
Q ss_pred cCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 79 QNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 79 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
.+ ..+||+||+||++|||+++ .+|++++|||||++||+.++..
T Consensus 76 ----------------------~~-----------~~qlS~G~~~r~~l~~~l~----~~~~i~ilDEp~~~lD~~~~~~ 118 (157)
T cd00267 76 ----------------------GY-----------VPQLSGGQRQRVALARALL----LNPDLLLLDEPTSGLDPASRER 118 (157)
T ss_pred ----------------------EE-----------EeeCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHH
Confidence 11 0019999999999999996 6799999999999999999998
Q ss_pred HHhh
Q psy17517 159 VASY 162 (163)
Q Consensus 159 i~~~ 162 (163)
+.+.
T Consensus 119 l~~~ 122 (157)
T cd00267 119 LLEL 122 (157)
T ss_pred HHHH
Confidence 8765
No 319
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=5e-28 Score=211.10 Aligned_cols=139 Identities=18% Similarity=0.280 Sum_probs=99.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQA 85 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~ 85 (163)
+.++.|++ +++|+||||+ |.+||+++|+| ||||||||| ++++.++..| +.+.- .. ..+..+++|++. .+
T Consensus 327 ~l~~~~~~---~~~l~~isl~-i~~Ge~~~l~G-~NGsGKSTL-l~~l~G~~~p~~G~i~~-~~-~~~i~~v~q~~~-~~ 397 (552)
T TIGR03719 327 NLSKGFGD---KLLIDDLSFK-LPPGGIVGVIG-PNGAGKSTL-FRMITGQEQPDSGTIKI-GE-TVKLAYVDQSRD-AL 397 (552)
T ss_pred eEEEEECC---eeeeccceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHcCCCCCCCeEEEE-CC-ceEEEEEeCCcc-cc
Confidence 45667743 5799999999 99999999999 999999999 6778888766 33321 10 111122455431 11
Q ss_pred c----------cCC-----CC---CchhHHHhchhcccCCC-ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeec
Q psy17517 86 F----------LGP-----EN---PEEPYLQGVNYNCVAPG-KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE 146 (163)
Q Consensus 86 ~----------~~~-----~~---~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDE 146 (163)
+ ... .. ....+++.+++ .. ..++++.+||||||||++|||+|+ .+|+++||||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGe~qrv~la~al~----~~p~lllLDE 469 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNF----KGSDQQKKVGQLSGGERNRVHLAKTLK----SGGNVLLLDE 469 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCC----ChhHhcCchhhCCHHHHHHHHHHHHHh----hCCCEEEEeC
Confidence 1 010 00 01234555665 43 468899999999999999999996 7899999999
Q ss_pred ccCCCCHHHHHHHHhhC
Q psy17517 147 IDAALDNTNIGKVASYI 163 (163)
Q Consensus 147 Pts~LD~~~~~~i~~~l 163 (163)
||++||+.++..+.+.|
T Consensus 470 Pt~~LD~~~~~~l~~~l 486 (552)
T TIGR03719 470 PTNDLDVETLRALEEAL 486 (552)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988753
No 320
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-27 Score=204.57 Aligned_cols=133 Identities=14% Similarity=0.249 Sum_probs=94.7
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHH-HHHhc--cccCCC-cccc
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLED-LRSMA--LAQNQS-AQAF 86 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~-~~~~~--~~q~~~-~~~~ 86 (163)
+++++|||+ +.+||+++|+| ||||||||| ++++.++.+| + ++....... +++.+ ++|.+. ..+|
T Consensus 262 ~~l~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~ 338 (491)
T PRK10982 262 PSIRDVSFD-LHKGEILGIAG-LVGAKRTDI-VETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIY 338 (491)
T ss_pred cccceeeEE-EeCCcEEEEec-CCCCCHHHH-HHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcc
Confidence 589999999 99999999999 999999999 6778888766 1 222223222 23334 444321 0011
Q ss_pred c-----------------CC-C--CC------chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 87 L-----------------GP-E--NP------EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 87 ~-----------------~~-~--~~------~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
. .. . .. ...+++.+++ . ...++++.+||||||||++|||+|+ .+|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGq~qrv~la~al~----~~p 410 (491)
T PRK10982 339 AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRV----KTPGHRTQIGSLSGGNQQKVIIGRWLL----TQP 410 (491)
T ss_pred cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCc----cCCCcccccccCCcHHHHHHHHHHHHh----cCC
Confidence 0 00 0 00 0123444444 3 3568899999999999999999996 789
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||++||+.++..+.++|
T Consensus 411 ~illLDEPt~gLD~~~~~~~~~~l 434 (491)
T PRK10982 411 EILMLDEPTRGIDVGAKFEIYQLI 434 (491)
T ss_pred CEEEEcCCCcccChhHHHHHHHHH
Confidence 999999999999999999987753
No 321
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.94 E-value=6.7e-28 Score=187.44 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=88.7
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHH--Hhc-cccC-C--Cccccc-C-C
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLR--SMA-LAQN-Q--SAQAFL-G-P 89 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~--~~~-~~q~-~--~~~~~~-~-~ 89 (163)
.+|+||||+ |++||+++|+| ||||||||| ++++.++.+| +.+.......+. ... .+.. . ++..+. . .
T Consensus 1 ~vl~~vs~~-i~~Ge~~~l~G-~NGsGKSTL-lk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~ 77 (213)
T PRK15177 1 VVLDKTDFV-MGYHEHIGILA-APGSGKTTL-TRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLY 77 (213)
T ss_pred CeeeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHc
Confidence 379999999 99999999999 999999999 6778888776 333211111100 000 0000 0 111110 0 0
Q ss_pred CCCch----hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 90 ENPEE----PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 90 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..... .+.+..++ ....+.++..||+|||||++|||||+ .+|+++||||||+++|+.++..+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~l----~~~~~~~~~~lS~G~~qrv~la~al~----~~p~llllDEP~~~lD~~~~~~~~~~ 146 (213)
T PRK15177 78 GLDGDEFSHFCYQLTQL----EQCYTDRVSEYSVTMKTHLAFAINLL----LPCRLYIADGKLYTGDNATQLRMQAA 146 (213)
T ss_pred CCCHHHHHHHHHHHhCh----hHHhhchHhhcCHHHHHHHHHHHHHh----cCCCEEEECCCCccCCHHHHHHHHHH
Confidence 00111 11222333 45567889999999999999999996 78999999999999999998887764
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.94 E-value=1.5e-27 Score=208.08 Aligned_cols=136 Identities=21% Similarity=0.309 Sum_probs=96.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCCc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQSA 83 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~~ 83 (163)
+.+|.|++ ++++++|+||+ |++||+++|+| ||||||||| ++++.|+..| +.+. ++. +..+ ++|++.
T Consensus 9 nls~~~~~--~~~il~~is~~-i~~Ge~~~liG-~NGsGKSTL-l~~i~G~~~p~~G~i~-~~~---~~~i~~v~Q~~~- 78 (552)
T TIGR03719 9 RVSKVVPP--KKEILKDISLS-FFPGAKIGVLG-LNGAGKSTL-LRIMAGVDKEFNGEAR-PAP---GIKVGYLPQEPQ- 78 (552)
T ss_pred eEEEecCC--CCeeecCceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEE-ecC---CCEEEEEeccCC-
Confidence 67888962 35799999999 99999999999 999999999 7788888766 2332 110 1223 455431
Q ss_pred cccc----------CC-------------------CCCc---------------------------hhHHHhchhcccCC
Q psy17517 84 QAFL----------GP-------------------ENPE---------------------------EPYLQGVNYNCVAP 107 (163)
Q Consensus 84 ~~~~----------~~-------------------~~~~---------------------------~~~~~~~~~~~~~~ 107 (163)
++. .. .... .++++.+++ .
T Consensus 79 -~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~ 153 (552)
T TIGR03719 79 -LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC----P 153 (552)
T ss_pred -CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC----C
Confidence 110 00 0000 011222222 2
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 108 GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 108 ~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..++++.+||||||||++|||+|+ .+|+++||||||++||+.++..+.++|
T Consensus 154 -~~~~~~~~LSgGqkqrv~la~al~----~~p~lLLLDEPt~~LD~~~~~~l~~~L 204 (552)
T TIGR03719 154 -PWDADVTKLSGGERRRVALCRLLL----SKPDMLLLDEPTNHLDAESVAWLEQHL 204 (552)
T ss_pred -cccCchhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCChHHHHHHHHHH
Confidence 257789999999999999999996 789999999999999999999887653
No 323
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=7.2e-28 Score=177.10 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=102.2
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc------------ccccccCHHHHHHhccccCC----
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI------------ATIRSLGLEDLRSMALAQNQ---- 81 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~------------~~i~~~~~~~~~~~~~~q~~---- 81 (163)
+...|.+||++ |.+||++.++| ||||||||| +..+.|...+ .+++-.+..+....|.||++
T Consensus 14 g~cLLa~~n~T-ia~GeivtlMG-PSGcGKSTL-ls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFp 90 (213)
T COG4136 14 GSCLLANVNFT-IAKGEIVTLMG-PSGCGKSTL-LSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFP 90 (213)
T ss_pred CceEEEeeeEE-ecCCcEEEEEC-CCCccHHHH-HHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccc
Confidence 46799999999 99999999999 999999999 6666666554 23344443332233467765
Q ss_pred -----Cccccc-CC-------CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeeccc
Q psy17517 82 -----SAQAFL-GP-------ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEID 148 (163)
Q Consensus 82 -----~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPt 148 (163)
.|.+|. +. ++.....++++++ ++..++.|.+||||||-||++-|+|. ..|+.++||||+
T Consensus 91 hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL----~g~f~~dP~tlSGGQrARvaL~R~Ll----a~Pk~lLLDEPF 162 (213)
T COG4136 91 HLSVGQNLLFALPATLKGNARRNAANAALERSGL----DGAFHQDPATLSGGQRARVALLRALL----AQPKALLLDEPF 162 (213)
T ss_pred ccccccceEEecCcccccHHHHhhHHHHHHHhcc----chhhhcChhhcCcchHHHHHHHHHHH----hCcceeeeCCch
Confidence 222221 11 1122347888888 89999999999999999999999995 789999999999
Q ss_pred CCCCHHHHHHHHhh
Q psy17517 149 AALDNTNIGKVASY 162 (163)
Q Consensus 149 s~LD~~~~~~i~~~ 162 (163)
|.||..-+.++.++
T Consensus 163 S~LD~ALR~qfR~w 176 (213)
T COG4136 163 SRLDVALRDQFRQW 176 (213)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999888764
No 324
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.94 E-value=1e-27 Score=198.58 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=113.6
Q ss_pred ccccCccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------------ccccccC
Q psy17517 2 LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------------ATIRSLG 68 (163)
Q Consensus 2 ~~~~~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------------~~i~~~~ 68 (163)
|+.....+.|.-++ +...++++|||+ |.+||.+|+|| +||||||..++.++..+..+ .++-..+
T Consensus 7 L~v~nLsV~f~~~~-~~~~aVk~isf~-i~~GEtlAlVG-ESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 7 LSIRNLSVAFHQEG-GTVEAVKGISFD-IEAGETLALVG-ESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred eeeeccEEEEecCC-cceEeeccceee-ecCCCEEEEEe-cCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 34455567777664 467899999999 99999999999 99999998878877777764 1222333
Q ss_pred HHHHHH----h--ccccCCCccccc----------------CCC-----CCchhHHHhchhcccCCCccCCCCCCCCHHH
Q psy17517 69 LEDLRS----M--ALAQNQSAQAFL----------------GPE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGE 121 (163)
Q Consensus 69 ~~~~~~----~--~~~q~~~~~~~~----------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq 121 (163)
..++|. + ++||+|...+-. +.. .+..++++.+++. .++...+.+|++|||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~-~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIP-EPEKRLDAYPHELSGGQ 162 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-chhhhhhhCCcccCcch
Confidence 333331 2 389999544431 100 1112356666662 22456788999999999
Q ss_pred HHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 122 KTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 122 kQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||.||.||+ ++|++||.||||.+||..-+.+|.++|
T Consensus 163 RQRVMIAMALa----n~P~lLIADEPTTALDVtvQaQIL~Ll 200 (534)
T COG4172 163 RQRVMIAMALA----NEPDLLIADEPTTALDVTVQAQILDLL 200 (534)
T ss_pred hhHHHHHHHHc----CCCCeEeecCCcchhhhhhHHHHHHHH
Confidence 99999999996 899999999999999999999998764
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=1.7e-27 Score=227.22 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=101.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc---cccccCHHHHHHhc--cccCC-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA---TIRSLGLEDLRSMA--LAQNQ- 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~---~i~~~~~~~~~~~~--~~q~~- 81 (163)
+.+|.|+..++.++|+|+||+ |++||.++|+| ||||||||| ++++.+..++. .+. ++.++ +.|+|
T Consensus 619 nvsf~y~~~~~~~vL~~inl~-i~~Ge~vaIvG-~sGSGKSTL-l~lLlG~~~~~~GG~I~------l~~~Iayv~Q~p~ 689 (1622)
T PLN03130 619 NGYFSWDSKAERPTLSNINLD-VPVGSLVAIVG-STGEGKTSL-ISAMLGELPPRSDASVV------IRGTVAYVPQVSW 689 (1622)
T ss_pred eeEEEccCCCCCceeeceeEE-ecCCCEEEEEC-CCCCCHHHH-HHHHHHhhccCCCceEE------EcCeEEEEcCccc
Confidence 678999864456899999999 99999999999 999999999 56677777652 222 34555 45554
Q ss_pred -------CcccccCCCCCch---hHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 82 -------SAQAFLGPENPEE---PYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 82 -------~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
+|..|..+ ..++ ++++.+++.. +.....++++.+|||||||||+||||+ +++|+++||
T Consensus 690 LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl----y~~~~IlLL 764 (1622)
T PLN03130 690 IFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV----YSNSDVYIF 764 (1622)
T ss_pred cCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH----hCCCCEEEE
Confidence 33333222 1222 2444444311 113345677889999999999999999 589999999
Q ss_pred ecccCCCCHHHHHHHHh
Q psy17517 145 DEIDAALDNTNIGKVAS 161 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~ 161 (163)
|||||+||+...+++.+
T Consensus 765 DEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 765 DDPLSALDAHVGRQVFD 781 (1622)
T ss_pred CCCccccCHHHHHHHHH
Confidence 99999999998887653
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=1e-27 Score=209.27 Aligned_cols=139 Identities=18% Similarity=0.262 Sum_probs=99.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQA 85 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~ 85 (163)
++++.|++ +++|+||||+ |.+||+++|+| ||||||||| ++++.++.+| +.+.- .. ..+..+++|++. .+
T Consensus 329 ~l~~~~~~---~~~l~~isl~-i~~Ge~~~l~G-~NGsGKSTL-l~~i~G~~~p~~G~i~~-~~-~~~i~~v~q~~~-~~ 399 (556)
T PRK11819 329 NLSKSFGD---RLLIDDLSFS-LPPGGIVGIIG-PNGAGKSTL-FKMITGQEQPDSGTIKI-GE-TVKLAYVDQSRD-AL 399 (556)
T ss_pred eEEEEECC---eeeecceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEE-CC-ceEEEEEeCchh-hc
Confidence 34567743 5799999999 99999999999 999999999 6778888766 33321 10 111122444431 11
Q ss_pred c----------cCC-----CCC---chhHHHhchhcccCCC-ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeec
Q psy17517 86 F----------LGP-----ENP---EEPYLQGVNYNCVAPG-KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE 146 (163)
Q Consensus 86 ~----------~~~-----~~~---~~~~~~~~~~~~~~~~-~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDE 146 (163)
+ ... ... ...+++.+++ .. ..++++.+||||||||++|||+|+ .+|+++||||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~~qrv~la~al~----~~p~lllLDE 471 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNF----KGGDQQKKVGVLSGGERNRLHLAKTLK----QGGNVLLLDE 471 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCC----ChhHhcCchhhCCHHHHHHHHHHHHHh----cCCCEEEEcC
Confidence 1 000 000 1234555565 43 468899999999999999999995 7899999999
Q ss_pred ccCCCCHHHHHHHHhhC
Q psy17517 147 IDAALDNTNIGKVASYI 163 (163)
Q Consensus 147 Pts~LD~~~~~~i~~~l 163 (163)
||++||+.++..+.+.|
T Consensus 472 Pt~~LD~~~~~~l~~~l 488 (556)
T PRK11819 472 PTNDLDVETLRALEEAL 488 (556)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988753
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.7e-27 Score=209.64 Aligned_cols=140 Identities=22% Similarity=0.251 Sum_probs=98.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQA 85 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~ 85 (163)
++++.|+ +.++|+|+||+ |.+||+++|+| ||||||||| ++++.|+..| +.+.-.. ..+..+++|.+...+
T Consensus 317 ~l~~~y~---~~~il~~isl~-i~~Ge~~~l~G-~NGsGKSTL-lk~l~G~~~p~~G~i~~~~--~~~igy~~Q~~~~~l 388 (638)
T PRK10636 317 KVSAGYG---DRIILDSIKLN-LVPGSRIGLLG-RNGAGKSTL-IKLLAGELAPVSGEIGLAK--GIKLGYFAQHQLEFL 388 (638)
T ss_pred eeEEEeC---CeeeeccceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCeEEECC--CEEEEEecCcchhhC
Confidence 4566774 35799999999 99999999999 999999999 6778888766 3332100 011112344321111
Q ss_pred cc-----------CCCC---CchhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCC
Q psy17517 86 FL-----------GPEN---PEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA 150 (163)
Q Consensus 86 ~~-----------~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~ 150 (163)
.. .... ....+++.+++ . ...++++..||||||||++|||+|+ .+|++|||||||++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l----~~~~~~~~~~~LSgGekqRl~La~~l~----~~p~lLlLDEPt~~ 460 (638)
T PRK10636 389 RADESPLQHLARLAPQELEQKLRDYLGGFGF----QGDKVTEETRRFSGGEKARLVLALIVW----QRPNLLLLDEPTNH 460 (638)
T ss_pred CccchHHHHHHHhCchhhHHHHHHHHHHcCC----ChhHhcCchhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCC
Confidence 10 0000 11234555555 3 3567899999999999999999995 78999999999999
Q ss_pred CCHHHHHHHHhhC
Q psy17517 151 LDNTNIGKVASYI 163 (163)
Q Consensus 151 LD~~~~~~i~~~l 163 (163)
||+.++..+.+.|
T Consensus 461 LD~~~~~~l~~~L 473 (638)
T PRK10636 461 LDLDMRQALTEAL 473 (638)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988753
No 328
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=2.6e-27 Score=211.75 Aligned_cols=140 Identities=20% Similarity=0.243 Sum_probs=99.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQA 85 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~ 85 (163)
+++|.|++ +..+++|+||+ |.+||+++|+| ||||||||| ++++.++.+| +.+.-.. ..+..+++|++...+
T Consensus 513 ~ls~~y~~--~~~il~~vsl~-i~~Ge~i~LvG-~NGsGKSTL-Lk~L~Gll~p~~G~I~~~~--~~~igyv~Q~~~~~l 585 (718)
T PLN03073 513 DASFGYPG--GPLLFKNLNFG-IDLDSRIAMVG-PNGIGKSTI-LKLISGELQPSSGTVFRSA--KVRMAVFSQHHVDGL 585 (718)
T ss_pred eeEEEeCC--CCeeEeccEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCCceEEECC--ceeEEEEeccccccC
Confidence 56778853 34699999999 99999999999 999999999 6778888766 3332111 011112444431110
Q ss_pred --------cc---CCCC---CchhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCC
Q psy17517 86 --------FL---GPEN---PEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA 150 (163)
Q Consensus 86 --------~~---~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~ 150 (163)
+. .... ....+++.+++ . ...++++.+||||||||++|||+|+ .+|++|||||||++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl----~~~~~~~~~~~LSgGqkqRvaLAraL~----~~p~lLLLDEPT~~ 657 (718)
T PLN03073 586 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV----TGNLALQPMYTLSGGQKSRVAFAKITF----KKPHILLLDEPSNH 657 (718)
T ss_pred CcchhHHHHHHHhcCCCCHHHHHHHHHHCCC----ChHHhcCCccccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCC
Confidence 00 0011 11235556666 4 3567889999999999999999995 78999999999999
Q ss_pred CCHHHHHHHHhh
Q psy17517 151 LDNTNIGKVASY 162 (163)
Q Consensus 151 LD~~~~~~i~~~ 162 (163)
||+.++..+.+.
T Consensus 658 LD~~s~~~l~~~ 669 (718)
T PLN03073 658 LDLDAVEALIQG 669 (718)
T ss_pred CCHHHHHHHHHH
Confidence 999999888764
No 329
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=2.7e-27 Score=227.21 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=106.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--cccc----CHHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSL----GLEDLRSMALAQ 79 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~----~~~~~~~~~~~q 79 (163)
+.++.|++. .+++++||||+ |++||+++|+| ||||||||| ++++.|+..| ++ +.+. ...+.++.+++.
T Consensus 1942 nLsK~Y~~~-~~~aL~~ISf~-I~~GEi~gLLG-~NGAGKTTL-lkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~ 2017 (2272)
T TIGR01257 1942 ELTKVYSGT-SSPAVDRLCVG-VRPGECFGLLG-VNGAGKTTT-FKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYC 2017 (2272)
T ss_pred EEEEEECCC-CceEEEeeEEE-EcCCcEEEEEC-CCCCcHHHH-HHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEE
Confidence 456778531 35799999999 99999999999 999999999 7888888877 21 2221 223455566433
Q ss_pred CCCccccc---------------CCCCC-----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 80 NQSAQAFL---------------GPENP-----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 80 ~~~~~~~~---------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
.+...++. +.... .+++++.+++ .+..++++.+||||||||++||+||+ .+|
T Consensus 2018 pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL----~~~~dk~~~~LSGGqKqRLslA~ALi----~~P 2089 (2272)
T TIGR01257 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL----SLYADRLAGTYSGGNKRKLSTAIALI----GCP 2089 (2272)
T ss_pred eccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----HHHhcCChhhCCHHHHHHHHHHHHHh----cCC
Confidence 33222221 10000 1134556666 67789999999999999999999995 889
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||+|||+.+++.+++.|
T Consensus 2090 ~VLLLDEPTsGLDp~sr~~l~~lL 2113 (2272)
T TIGR01257 2090 PLVLLDEPTTGMDPQARRMLWNTI 2113 (2272)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH
Confidence 999999999999999999998754
No 330
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=1.9e-27 Score=208.79 Aligned_cols=137 Identities=19% Similarity=0.107 Sum_probs=99.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCcc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQ- 84 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~- 84 (163)
+.++.|++ ..|+++||+ |.+||+++|+| ||||||||| ++++.|+.+| +.+. ++ .+..+++|++...
T Consensus 345 ~ls~~~~~----~~l~~~s~~-i~~Geiv~l~G-~NGsGKSTL-lk~L~Gl~~p~~G~I~-~~---~~i~y~~Q~~~~~~ 413 (590)
T PRK13409 345 DLTKKLGD----FSLEVEGGE-IYEGEVIGIVG-PNGIGKTTF-AKLLAGVLKPDEGEVD-PE---LKISYKPQYIKPDY 413 (590)
T ss_pred ceEEEECC----EEEEecceE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEE-Ee---eeEEEecccccCCC
Confidence 45566642 248999999 99999999999 999999999 6778888776 2332 11 1111244443210
Q ss_pred -------cccCCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCC
Q psy17517 85 -------AFLGPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152 (163)
Q Consensus 85 -------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD 152 (163)
+...... ...++++.+++ .+..++++.+|||||||||+|||+|+ ++|+++||||||++||
T Consensus 414 ~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l----~~~~~~~~~~LSGGe~QRvaiAraL~----~~p~llLLDEPt~~LD 485 (590)
T PRK13409 414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQL----ERLLDKNVKDLSGGELQRVAIAACLS----RDADLYLLDEPSAHLD 485 (590)
T ss_pred CCcHHHHHHHHhhhcChHHHHHHHHHHCCC----HHHHhCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCC
Confidence 0000000 11345666666 56788999999999999999999996 7899999999999999
Q ss_pred HHHHHHHHhhC
Q psy17517 153 NTNIGKVASYI 163 (163)
Q Consensus 153 ~~~~~~i~~~l 163 (163)
+.++..+.++|
T Consensus 486 ~~~~~~l~~~l 496 (590)
T PRK13409 486 VEQRLAVAKAI 496 (590)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.8e-28 Score=212.73 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=98.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--ccc---------CHHHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSL---------GLEDLRS 74 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~---------~~~~~~~ 74 (163)
++++.|++ +++|+||||+ |.+|++++|+| ||||||||| ++++.|+..| +.+ .+. .....+.
T Consensus 6 nls~~~g~---~~~l~~vs~~-i~~Ge~v~LvG-~NGsGKSTL-LkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 6 SLQIRRGV---RVLLDNATAT-INPGQKVGLVG-KNGCGKSTL-LALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred EEEEEeCC---ceeecCcEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 57788853 6799999999 99999999999 999999999 7778888766 221 110 0000000
Q ss_pred hc--cccCCC---------------c--cccc-------CC-----CCCchhHHHhchhcccCC-CccCCCCCCCCHHHH
Q psy17517 75 MA--LAQNQS---------------A--QAFL-------GP-----ENPEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEK 122 (163)
Q Consensus 75 ~~--~~q~~~---------------~--~~~~-------~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqk 122 (163)
.+ +++... + ..+. .. ..+...+++.+++ . ...++++.+||||||
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl----~~~~~~~~~~~LSgGer 155 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF----SNEQLERPVSDFSGGWR 155 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC----CchhhcCchhhcCHHHH
Confidence 01 111100 0 0000 00 0112235666666 4 467889999999999
Q ss_pred HHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 123 TVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 123 QrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||+|||+|+ .+|++|||||||++||+.+...+.++|
T Consensus 156 qRv~LA~aL~----~~P~lLLLDEPtn~LD~~~~~~L~~~L 192 (638)
T PRK10636 156 MRLNLAQALI----CRSDLLLLDEPTNHLDLDAVIWLEKWL 192 (638)
T ss_pred HHHHHHHHHc----cCCCEEEEcCCCCcCCHHHHHHHHHHH
Confidence 9999999995 789999999999999999998887653
No 332
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-27 Score=190.59 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc--cccCHHHHHHhccccCC---------Ccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSLGLEDLRSMALAQNQ---------SAQ 84 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~~~~~~~~~~~~q~~---------~~~ 84 (163)
..++++++||+ |.+||+++|+| ||||||||| ++++.|+.+| +.+ .+.. ..+++.+ ++.
T Consensus 36 ~~~il~~is~~-i~~Ge~~~liG-~NGsGKSTL-lk~L~Gl~~p~~G~I~~~g~~------~~~~~~~~~~~~~tv~enl 106 (264)
T PRK13546 36 TFFALDDISLK-AYEGDVIGLVG-INGSGKSTL-SNIIGGSLSPTVGKVDRNGEV------SVIAISAGLSGQLTGIENI 106 (264)
T ss_pred ceEEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCcCCCceEEEECCEE------eEEecccCCCCCCcHHHHH
Confidence 46799999999 99999999999 999999999 6778888766 222 1100 0011111 000
Q ss_pred cc----cCCCCC-c----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHH
Q psy17517 85 AF----LGPENP-E----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTN 155 (163)
Q Consensus 85 ~~----~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~ 155 (163)
.+ ...... . +.+++.+++ .+..+.++.+|||||+||++|||||+ .+|+++||||||++||+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~Gq~qrv~Laral~----~~p~iLlLDEPt~gLD~~~ 178 (264)
T PRK13546 107 EFKMLCMGFKRKEIKAMTPKIIEFSEL----GEFIYQPVKKYSSGMRAKLGFSINIT----VNPDILVIDEALSVGDQTF 178 (264)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCC----chhhcCCcccCCHHHHHHHHHHHHHh----hCCCEEEEeCccccCCHHH
Confidence 00 011000 0 113334444 56678889999999999999999996 7899999999999999999
Q ss_pred HHHHHhh
Q psy17517 156 IGKVASY 162 (163)
Q Consensus 156 ~~~i~~~ 162 (163)
+..+.+.
T Consensus 179 ~~~l~~~ 185 (264)
T PRK13546 179 AQKCLDK 185 (264)
T ss_pred HHHHHHH
Confidence 8887765
No 333
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.94 E-value=9.1e-27 Score=206.58 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=107.3
Q ss_pred ccceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHH---H
Q psy17517 7 SAQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDL---R 73 (163)
Q Consensus 7 ~~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~---~ 73 (163)
.+.++.|+... ..++++|+||+ +.+||+++|+| ||||||||| ++++.++.+| .++...+..++ +
T Consensus 8 ~nl~~~y~~~~~~~~il~~vs~~-i~~Ge~~~l~G-~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 84 (648)
T PRK10535 8 KDIRRSYPSGEEQVEVLKGISLD-IYAGEMVAIVG-ASGSGKSTL-MNILGCLDKPTSGTYRVAGQDVATLDADALAQLR 84 (648)
T ss_pred eeEEEEeCCCCCCeeeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHH
Confidence 36788896422 35799999999 99999999999 999999999 6778888876 13344444332 2
Q ss_pred -Hhc--cccCCCcccccC---------------CCCC-----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 74 -SMA--LAQNQSAQAFLG---------------PENP-----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 74 -~~~--~~q~~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
+.+ ++|++ .+|.. .... ..++++.+++ .+..++.+.+||+||+||++|||+
T Consensus 85 ~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl----~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 85 REHFGFIFQRY--HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGL----EDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred hccEEEEeCCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----hhhhcCCcccCCHHHHHHHHHHHH
Confidence 334 55555 23211 0000 1124555666 667888999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ .+|++++|||||++||+.+++.+.++|
T Consensus 159 L~----~~P~lLllDEP~~gLD~~s~~~l~~ll 187 (648)
T PRK10535 159 LM----NGGQVILADEPTGALDSHSGEEVMAIL 187 (648)
T ss_pred Hh----cCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 96 789999999999999999999987753
No 334
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.3e-26 Score=197.80 Aligned_cols=142 Identities=19% Similarity=0.195 Sum_probs=107.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHH-HHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDL-RSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~-~~~~- 76 (163)
+.+.+|++ .+||++|||+ +.+||+++++| .|||||||| ++++.|.+.| ..+.-.++.+- ...|
T Consensus 13 ~i~K~Fgg---V~AL~~v~l~-v~~GEV~aL~G-eNGAGKSTL-mKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 13 GISKSFGG---VKALDGVSLT-VRPGEVHALLG-ENGAGKSTL-MKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred cceEEcCC---ceeeccceeE-EeCceEEEEec-CCCCCHHHH-HHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 56778874 7899999999 99999999999 999999999 7889999988 12333444433 3334
Q ss_pred -cccCC--------CcccccCCCCCc--------------hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 77 -LAQNQ--------SAQAFLGPENPE--------------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 77 -~~q~~--------~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
++|+. ..++|++.+... ..+++.+++ ....+.++.+||.||||.|+|||||+
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~----~~~~~~~v~~LsiaqrQ~VeIArAl~- 161 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGL----DIDPDTLVGDLSIAQRQMVEIARALS- 161 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCC----CCChhhhhhhCCHHHHHHHHHHHHHh-
Confidence 77765 223333322111 125555655 23378899999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+++++|||||||+|+......+.+++
T Consensus 162 ---~~arllIlDEPTaaLt~~E~~~Lf~~i 188 (500)
T COG1129 162 ---FDARVLILDEPTAALTVKETERLFDLI 188 (500)
T ss_pred ---cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 689999999999999999999887753
No 335
>PLN03211 ABC transporter G-25; Provisional
Probab=99.94 E-value=6.2e-27 Score=207.80 Aligned_cols=140 Identities=19% Similarity=0.193 Sum_probs=97.5
Q ss_pred eeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc----cc--ccccCH-HHHHHhccccCCC
Q psy17517 10 AFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI----AT--IRSLGL-EDLRSMALAQNQS 82 (163)
Q Consensus 10 ~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~----~~--i~~~~~-~~~~~~~~~q~~~ 82 (163)
+..|+ ++++|+|||++ +++||+++|+| ||||||||| ++++.|...+ ++ +.+.+. .+.++++.+..++
T Consensus 75 ~~~~~---~~~iL~~vs~~-i~~Ge~~aI~G-pnGaGKSTL-L~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 75 TRQIQ---ERTILNGVTGM-ASPGEILAVLG-PSGSGKSTL-LNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred cccCC---CCeeeeCCEEE-EECCEEEEEEC-CCCCCHHHH-HHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 44554 36799999999 99999999999 999999999 6777877654 22 222221 2334445333332
Q ss_pred ccccc--------------C-CCC-Cc-------hhHHHhchhcccCCCcc-----CCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 83 AQAFL--------------G-PEN-PE-------EPYLQGVNYNCVAPGKR-----FQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 83 ~~~~~--------------~-~~~-~~-------~~~~~~~~~~~~~~~~~-----~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
..++. . +.. .. +++++.+++ .+.. ++.+..||||||||++|||+|+
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~-- 222 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL----TKCENTIIGNSFIRGISGGERKRVSIAHEML-- 222 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC----hhhcCceeCCCCCCCcChhhhhHHHHHHHHH--
Confidence 22221 1 000 11 224555565 3332 4567899999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|++++|||||++||+.++.++.+.|
T Consensus 223 --~~P~iLlLDEPtsgLD~~~~~~l~~~L 249 (659)
T PLN03211 223 --INPSLLILDEPTSGLDATAAYRLVLTL 249 (659)
T ss_pred --hCCCEEEEeCCCCCcCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 336
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=3.6e-27 Score=184.69 Aligned_cols=134 Identities=16% Similarity=0.278 Sum_probs=105.8
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHH-HHHHhccccCCCcccccCC---
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLE-DLRSMALAQNQSAQAFLGP--- 89 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~-~~~~~~~~q~~~~~~~~~~--- 89 (163)
+..|++|+||+ +++|++++++| +|||||||+ .+|+.++..| +. +.+.+.. +.+.+|+|.+-+.-+|...
T Consensus 14 ~k~av~~isf~-v~~G~i~GllG-~NGAGKTTt-fRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~ 90 (300)
T COG4152 14 DKKAVDNISFE-VPPGEIFGLLG-PNGAGKTTT-FRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVE 90 (300)
T ss_pred ceeeecceeee-ecCCeEEEeec-CCCCCccch-HHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHH
Confidence 47899999999 99999999999 999999999 7888888877 22 3333332 3455566666555454211
Q ss_pred ------------C-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCC
Q psy17517 90 ------------E-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152 (163)
Q Consensus 90 ------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD 152 (163)
. .....|++++++ .+....++.+||.|++|+|-+-.++ +|+|+++|||||+||||
T Consensus 91 dql~yla~LkGm~~~e~~~~~~~wLer~~i----~~~~~~kIk~LSKGnqQKIQfisav----iHePeLlILDEPFSGLD 162 (300)
T COG4152 91 DQLKYLAELKGMPKAEIQKKLQAWLERLEI----VGKKTKKIKELSKGNQQKIQFISAV----IHEPELLILDEPFSGLD 162 (300)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhccc----cccccchHHHhhhhhhHHHHHHHHH----hcCCCEEEecCCccCCC
Confidence 0 011238888888 8899999999999999999999999 59999999999999999
Q ss_pred HHHHHHHHhh
Q psy17517 153 NTNIGKVASY 162 (163)
Q Consensus 153 ~~~~~~i~~~ 162 (163)
|.+.+-+.+.
T Consensus 163 PVN~elLk~~ 172 (300)
T COG4152 163 PVNVELLKDA 172 (300)
T ss_pred hhhHHHHHHH
Confidence 9998876553
No 337
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.9e-27 Score=189.29 Aligned_cols=128 Identities=18% Similarity=0.148 Sum_probs=97.1
Q ss_pred CeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc----cc---------cccCHHHHHHhccccCCCcccccC--
Q psy17517 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA----TI---------RSLGLEDLRSMALAQNQSAQAFLG-- 88 (163)
Q Consensus 24 ~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~----~i---------~~~~~~~~~~~~~~q~~~~~~~~~-- 88 (163)
+++|+ .+.-.++|+-| +|||||||+ ++++.|+.+|. .+ .+....--++++++.+|+..+|..
T Consensus 16 ~a~~~-~p~~GvTAlFG-~SGsGKTsl-in~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFT-LPARGITALFG-PSGSGKTSL-INMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEecc-CCCCceEEEec-CCCCChhhH-HHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 57888 77778999999 999999999 89999999881 11 111111224455444444455521
Q ss_pred --------CC----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 89 --------PE----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 89 --------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
.. ...+.+.+.+|+ .+..+++|.+|||||||||||+||| +..|++|+||||.|+||...+
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI----~hLL~R~P~~LSGGEkQRVAIGRAL----Lt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGI----EHLLDRYPGTLSGGEKQRVAIGRAL----LTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCc----HHHHhhCCCccCcchhhHHHHHHHH----hcCCCeeeecCchhhcccchh
Confidence 11 122346667777 8999999999999999999999999 588999999999999999999
Q ss_pred HHHHhh
Q psy17517 157 GKVASY 162 (163)
Q Consensus 157 ~~i~~~ 162 (163)
++++-+
T Consensus 165 ~Eilpy 170 (352)
T COG4148 165 REILPY 170 (352)
T ss_pred hHHHHH
Confidence 998764
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=2e-27 Score=210.39 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=96.3
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cccc--c------cCHHHHHHh-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIR--S------LGLEDLRSM- 75 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~--~------~~~~~~~~~- 75 (163)
.++++.|++ .++|+||||+ |++|++++|+| ||||||||| ++++.|+..| +.+. + .+....+..
T Consensus 7 ~~ls~~~~~---~~il~~is~~-i~~Ge~v~LvG-~NGsGKSTL-LriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 7 HGAWLSFSD---APLLDNAELH-IEDNERVCLVG-RNGAGKSTL-MKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVE 80 (635)
T ss_pred eeEEEEeCC---ceeEeCcEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCC
Confidence 367788853 5799999999 99999999999 999999999 7778888766 2211 1 000000000
Q ss_pred -ccccCC--------------------------Cccc--c------c-CC-----CCCchhHHHhchhcccCCCccCCCC
Q psy17517 76 -ALAQNQ--------------------------SAQA--F------L-GP-----ENPEEPYLQGVNYNCVAPGKRFQPM 114 (163)
Q Consensus 76 -~~~q~~--------------------------~~~~--~------~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (163)
.+++.. ...+ + + .. ..+...+++.+++ . .++++
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl----~--~~~~~ 154 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL----D--PDAAL 154 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC----C--CCCch
Confidence 011100 0000 0 0 00 0111234555555 3 37889
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 115 TNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 115 ~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|||||||||+|||+|+ .+|++|||||||++||+.++..+.++|
T Consensus 155 ~~LSgGekqRv~LAraL~----~~P~lLLLDEPt~~LD~~~~~~L~~~L 199 (635)
T PRK11147 155 SSLSGGWLRKAALGRALV----SNPDVLLLDEPTNHLDIETIEWLEGFL 199 (635)
T ss_pred hhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCCccCHHHHHHHHHHH
Confidence 999999999999999995 789999999999999999999887653
No 339
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1.7e-26 Score=186.69 Aligned_cols=130 Identities=19% Similarity=0.183 Sum_probs=87.2
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCcccc---------c
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQAF---------L 87 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~~---------~ 87 (163)
+++|+++||+ |.+||+++|+| +|||||||| ++++.++.+| +.+. ++- +-.+++|.+ .++ +
T Consensus 50 ~~vL~~vs~~-i~~Ge~~~liG-~NGsGKSTL-l~~I~Gl~~p~~G~I~-i~g---~i~yv~q~~--~l~~~tv~enl~~ 120 (282)
T cd03291 50 APVLKNINLK-IEKGEMLAITG-STGSGKTSL-LMLILGELEPSEGKIK-HSG---RISFSSQFS--WIMPGTIKENIIF 120 (282)
T ss_pred ccceeeeeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEE-ECC---EEEEEeCcc--cccccCHHHHhhc
Confidence 5799999999 99999999999 999999999 6778888776 2221 000 011133332 111 1
Q ss_pred CCCCCc---hhHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHH
Q psy17517 88 GPENPE---EPYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIG 157 (163)
Q Consensus 88 ~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~ 157 (163)
...... ...++.+++.. ......++.+.+||||||||++|||+|+ .+|+++||||||++||+.++.
T Consensus 121 ~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~----~~p~iLiLDEPt~gLD~~~~~ 196 (282)
T cd03291 121 GVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY----KDADLYLLDSPFGYLDVFTEK 196 (282)
T ss_pred ccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHH
Confidence 111011 11222222210 0011334557899999999999999996 789999999999999999998
Q ss_pred HHHh
Q psy17517 158 KVAS 161 (163)
Q Consensus 158 ~i~~ 161 (163)
.+.+
T Consensus 197 ~l~~ 200 (282)
T cd03291 197 EIFE 200 (282)
T ss_pred HHHH
Confidence 7765
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=9.2e-27 Score=204.54 Aligned_cols=142 Identities=20% Similarity=0.143 Sum_probs=101.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cccc-------------ccCHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIR-------------SLGLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~-------------~~~~~~~ 72 (163)
..+++|.. +..+|.+++ . +.+||+++|+| ||||||||| ++++.|+..| +.+. +.+...+
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~-i~~Gev~gLvG-~NGaGKSTL-lkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-I-PKEGKVTGILG-PNGIGKTTA-VKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceEEecC--CceeEecCC-c-CCCCCEEEEEC-CCCCCHHHH-HHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 47888964 346999999 8 99999999999 999999999 7888888776 3332 2222221
Q ss_pred H-------Hhc--cccCC--CcccccC--------C--CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 73 R-------SMA--LAQNQ--SAQAFLG--------P--ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 73 ~-------~~~--~~q~~--~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
. .++ .+|.. ...++.. . ....+++++.+++ ....++++.+||||||||++||+||
T Consensus 152 ~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l----~~~~~~~~~~LSgGe~qrv~ia~al 227 (590)
T PRK13409 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGL----ENILDRDISELSGGELQRVAIAAAL 227 (590)
T ss_pred HHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHHHH
Confidence 1 111 12211 1111100 0 0111335666666 6678999999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ ++|+++||||||++||+..+..+.++|
T Consensus 228 ~----~~p~lllLDEPts~LD~~~~~~l~~~i 255 (590)
T PRK13409 228 L----RDADFYFFDEPTSYLDIRQRLNVARLI 255 (590)
T ss_pred h----cCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 6 789999999999999999999888753
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=7.9e-27 Score=206.54 Aligned_cols=139 Identities=23% Similarity=0.353 Sum_probs=97.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQA 85 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~ 85 (163)
++++.|++ +++++||||+ |.+|++++|+| ||||||||| ++++.++..| +.+.- .. .++-.+++|++. .+
T Consensus 324 ~l~~~~~~---~~il~~vsl~-i~~Ge~~~l~G-~NGsGKSTL-lk~l~G~~~p~~G~i~~-~~-~~~i~y~~q~~~-~l 394 (635)
T PRK11147 324 NVNYQIDG---KQLVKDFSAQ-VQRGDKIALIG-PNGCGKTTL-LKLMLGQLQADSGRIHC-GT-KLEVAYFDQHRA-EL 394 (635)
T ss_pred eeEEEECC---eEEEcCcEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCCcEEEE-CC-CcEEEEEeCccc-cc
Confidence 46677753 5799999999 99999999999 999999999 6778888766 33321 10 111112344321 11
Q ss_pred c----------cCC-----CCCc---hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecc
Q psy17517 86 F----------LGP-----ENPE---EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEI 147 (163)
Q Consensus 86 ~----------~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP 147 (163)
+ ... .... ..+++.+++ ..+..++++.+||||||||++|||+|+ .+|++||||||
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l---~~~~~~~~~~~LSgGekqRl~la~al~----~~p~lLlLDEP 467 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLF---HPKRAMTPVKALSGGERNRLLLARLFL----KPSNLLILDEP 467 (635)
T ss_pred CCCCCHHHHHHhhcccccccchHHHHHHHHHhcCC---CHHHHhChhhhCCHHHHHHHHHHHHHh----cCCCEEEEcCC
Confidence 1 000 0001 123444444 123567889999999999999999995 78999999999
Q ss_pred cCCCCHHHHHHHHhh
Q psy17517 148 DAALDNTNIGKVASY 162 (163)
Q Consensus 148 ts~LD~~~~~~i~~~ 162 (163)
|++||+.++..+.+.
T Consensus 468 t~~LD~~~~~~l~~~ 482 (635)
T PRK11147 468 TNDLDVETLELLEEL 482 (635)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999988765
No 342
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-26 Score=174.32 Aligned_cols=134 Identities=25% Similarity=0.332 Sum_probs=102.0
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCH----HHHHHhc---cccCC-----
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGL----EDLRSMA---LAQNQ----- 81 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~----~~~~~~~---~~q~~----- 81 (163)
+++++.++||+ +.+||++.|.| ||||||||| ++++.|+.+| .+ ..+.+. +++++.. .-|+-
T Consensus 14 e~~lf~~L~f~-l~~Ge~~~i~G-~NG~GKTtL-LRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 14 ERTLFSDLSFT-LNAGEALQITG-PNGAGKTTL-LRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred cceeecceeEE-EcCCCEEEEEC-CCCCcHHHH-HHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 57899999999 99999999999 999999999 7889999988 22 221211 1222222 22211
Q ss_pred ---Cccccc----C--CCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCC
Q psy17517 82 ---SAQAFL----G--PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152 (163)
Q Consensus 82 ---~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD 152 (163)
+|..|+ . ......++++.+++ .+..|.++.+||-|||+||||||..+ ..+++.|||||+++||
T Consensus 91 Ta~ENL~F~~~~~~~~~~~~i~~Al~~vgL----~g~~dlp~~~LSAGQqRRvAlArL~l----s~~pLWiLDEP~taLD 162 (209)
T COG4133 91 TALENLHFWQRFHGSGNAATIWEALAQVGL----AGLEDLPVGQLSAGQQRRVALARLWL----SPAPLWILDEPFTALD 162 (209)
T ss_pred hHHHHHHHHHHHhCCCchhhHHHHHHHcCc----ccccccchhhcchhHHHHHHHHHHHc----CCCCceeecCcccccC
Confidence 333332 1 12334567888898 89999999999999999999999995 6799999999999999
Q ss_pred HHHHHHHHhh
Q psy17517 153 NTNIGKVASY 162 (163)
Q Consensus 153 ~~~~~~i~~~ 162 (163)
..+...+..+
T Consensus 163 k~g~a~l~~l 172 (209)
T COG4133 163 KEGVALLTAL 172 (209)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 343
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=3.1e-26 Score=179.61 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=85.4
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-----------cc---ccccCHHHHHHh---ccccC
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-----------AT---IRSLGLEDLRSM---ALAQN 80 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-----------~~---i~~~~~~~~~~~---~~~q~ 80 (163)
+.++|++|||+ |++||+++|+| +||||||||+...+.....+ .. +......+++.. +..++
T Consensus 7 ~~~~l~~vsl~-i~~Ge~~~l~G-~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (226)
T cd03270 7 REHNLKNVDVD-IPRNKLVVITG-VSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQ 84 (226)
T ss_pred hhhccccceee-cCCCcEEEEEc-CCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecC
Confidence 57899999999 99999999999 99999999952222110000 00 000000011110 11111
Q ss_pred CCcccc--------------c----CCCC--CchhHHHhchhcccCCC-ccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 81 QSAQAF--------------L----GPEN--PEEPYLQGVNYNCVAPG-KRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 81 ~~~~~~--------------~----~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
+..... + .... ...++++.+++ .. ..++++.+||||||||++|||+|+ .+|
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~~qrv~laral~----~~p 156 (226)
T cd03270 85 KTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGL----GYLTLSRSAPTLSGGEAQRIRLATQIG----SGL 156 (226)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCC----CcccccCccCcCCHHHHHHHHHHHHHH----hCC
Confidence 110000 0 0000 00123444444 44 478899999999999999999997 556
Q ss_pred --CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 --PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 --~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++||||||++||+..+.++.+.|
T Consensus 157 ~~~llllDEPt~gLD~~~~~~l~~~l 182 (226)
T cd03270 157 TGVLYVLDEPSIGLHPRDNDRLIETL 182 (226)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 699999999999999999887753
No 344
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.93 E-value=6.2e-26 Score=200.30 Aligned_cols=135 Identities=20% Similarity=0.215 Sum_probs=96.4
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-----c--ccccc--CHHHHHHhccccCCCccccc-
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-----A--TIRSL--GLEDLRSMALAQNQSAQAFL- 87 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-----~--~i~~~--~~~~~~~~~~~q~~~~~~~~- 87 (163)
++++|+|+|++ +++||+++|+| ||||||||| ++++.+...+ + .+++. +...+++.+.+..+++.++.
T Consensus 37 ~~~iL~~vs~~-i~~Ge~~aI~G-~sGsGKSTL-L~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGV-AKPGELLAVMG-SSGAGKTTL-MNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEE-EeCCeEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCcc
Confidence 57899999999 99999999999 999999999 6666776544 1 12222 22455666644444333331
Q ss_pred -------------CCCC---------CchhHHHhchhcccCCCccCCCC------CCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 88 -------------GPEN---------PEEPYLQGVNYNCVAPGKRFQPM------TNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 88 -------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~------~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
.... ..+++++.+++ .+..+..+ ..||||||||++|||+|+ .+|
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~----~~p 185 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL----RKCANTRIGVPGRVKGLSGGERKRLAFASELL----TDP 185 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCc----hhcCcCccCCCCCCCCcCcchhhHHHHHHHHH----cCC
Confidence 1000 11235666666 44444443 469999999999999995 789
Q ss_pred CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++++|||||++||+.+...+.+.|
T Consensus 186 ~vlllDEPtsgLD~~~~~~l~~~L 209 (617)
T TIGR00955 186 PLLFCDEPTSGLDSFMAYSVVQVL 209 (617)
T ss_pred CEEEeeCCCcchhHHHHHHHHHHH
Confidence 999999999999999999988653
No 345
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.93 E-value=7.8e-26 Score=174.13 Aligned_cols=133 Identities=28% Similarity=0.386 Sum_probs=89.9
Q ss_pred Ccc-cCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc-----------cc--cccCH--HHHHHhc--cccCC
Q psy17517 20 PYL-QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-----------TI--RSLGL--EDLRSMA--LAQNQ 81 (163)
Q Consensus 20 ~~l-~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-----------~i--~~~~~--~~~~~~~--~~q~~ 81 (163)
.-+ ++++++ +.+| +++|+| |||||||||+ ..+.++..+. ++ .+.+. ...++++ +||++
T Consensus 10 r~~~~~~~l~-~~~g-~~~i~G-~nGsGKStll-~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~ 85 (197)
T cd03278 10 KSFADKTTIP-FPPG-LTAIVG-PNGSGKSNII-DAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNS 85 (197)
T ss_pred cCcCCCeeee-cCCC-cEEEEC-CCCCCHHHHH-HHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcC
Confidence 445 789999 9999 999999 9999999995 4455543221 11 01110 0112333 78887
Q ss_pred CcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 82 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
..+.-.....+..++++. .+..++.+.+||||||||++|||+++...+.+|++++|||||++||+..+..+.+
T Consensus 86 ~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~ 158 (197)
T cd03278 86 DGRYSIISQGDVSEIIEA-------PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR 158 (197)
T ss_pred CCceeEEehhhHHHHHhC-------CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 655211111222223333 3566788999999999999999999732235679999999999999999998877
Q ss_pred hC
Q psy17517 162 YI 163 (163)
Q Consensus 162 ~l 163 (163)
.|
T Consensus 159 ~l 160 (197)
T cd03278 159 LL 160 (197)
T ss_pred HH
Confidence 53
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=2.1e-26 Score=205.88 Aligned_cols=143 Identities=19% Similarity=0.226 Sum_probs=94.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc---cc--cccc---------ccCH----
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH---RI--ATIR---------SLGL---- 69 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~---~~--~~i~---------~~~~---- 69 (163)
+.+|.|++ .++|+|+||+ |.+|++++||| +|||||||| ++++.+.. .| ..+. ....
T Consensus 182 nls~~y~~---~~ll~~isl~-i~~Ge~~gLvG-~NGsGKSTL-Lr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 182 NFSISVGG---RDLIVDASVT-LAFGRHYGLVG-RNGTGKTTF-LRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred eEEEEeCC---CEEEECCEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 57788853 5699999999 99999999999 999999999 56666532 12 1111 0111
Q ss_pred -----H--H-HHHh--ccccCCCcccc------cCCC----CCc-------------------------hhHHHhchhcc
Q psy17517 70 -----E--D-LRSM--ALAQNQSAQAF------LGPE----NPE-------------------------EPYLQGVNYNC 104 (163)
Q Consensus 70 -----~--~-~~~~--~~~q~~~~~~~------~~~~----~~~-------------------------~~~~~~~~~~~ 104 (163)
. . ++.. +++|.+..+.. ..+. ... ..++..+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~- 334 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT- 334 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC-
Confidence 0 0 1111 24443321110 0000 000 1123333330
Q ss_pred cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 105 VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 105 ~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
....++++.+||||||||++|||+|+ .+|++|||||||++||+.++..+.++|
T Consensus 335 --~~~~~~~~~~LSgG~k~rv~LA~aL~----~~p~lLlLDEPt~~LD~~~~~~l~~~L 387 (718)
T PLN03073 335 --PEMQVKATKTFSGGWRMRIALARALF----IEPDLLLLDEPTNHLDLHAVLWLETYL 387 (718)
T ss_pred --hHHHhCchhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 13457789999999999999999996 789999999999999999999887753
No 347
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.2e-26 Score=170.99 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=103.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--------------ccccccCHHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--------------ATIRSLGLEDLR 73 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--------------~~i~~~~~~~~~ 73 (163)
+.+..|.+ ...-+||||+ +.|||..+|+| +||||||||+ +.+.+-..| .++-.+...+.|
T Consensus 11 ~lsk~Yg~---~~gc~~vsF~-l~PGeVLgiVG-ESGSGKtTLL-~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR 84 (258)
T COG4107 11 GLSKLYGP---GKGCRDVSFD-LYPGEVLGIVG-ESGSGKTTLL-KCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84 (258)
T ss_pred hhhhhhCC---CcCcccccee-ecCCcEEEEEe-cCCCcHHhHH-HHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence 55667754 4688999999 99999999999 9999999995 444444433 122222333333
Q ss_pred Hh----c--cccCCCcccccC---------------------CCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHH
Q psy17517 74 SM----A--LAQNQSAQAFLG---------------------PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAA 126 (163)
Q Consensus 74 ~~----~--~~q~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrva 126 (163)
+- . +.|||.+-+-.. .+....+|++++.+. ....+..|.++|||||||+.
T Consensus 85 ~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~---~~RiDD~PrtFSGGMqQRLQ 161 (258)
T COG4107 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID---LDRIDDLPRTFSGGMQQRLQ 161 (258)
T ss_pred HHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC---cccccCcccccchHHHHHHH
Confidence 22 2 677774433310 011113478888772 45678889999999999999
Q ss_pred HHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 127 LALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 127 iAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||.|+ ..|+++|+||||.+||..-+.++.+++
T Consensus 162 iARnLV----t~PrLvfMDEPTGGLDVSVQARLLDll 194 (258)
T COG4107 162 IARNLV----TRPRLVFMDEPTGGLDVSVQARLLDLL 194 (258)
T ss_pred HHHHhc----cCCceEEecCCCCCcchhhHHHHHHHH
Confidence 999995 789999999999999999999988753
No 348
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=3.2e-26 Score=198.20 Aligned_cols=138 Identities=25% Similarity=0.348 Sum_probs=96.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCcc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQ- 84 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~- 84 (163)
+.++.|+ ++++++++|++ +.+|+.++||| +|||||||| ++++.|...| +++.... .++-.++.|++...
T Consensus 8 ~ls~~~g---~~~l~~~~~l~-~~~G~riGLvG-~NGaGKSTL-LkilaG~~~~~~G~i~~~~--~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 8 NLSLAYG---DRPLLENVSLT-LNPGERIGLVG-RNGAGKSTL-LKILAGELEPDSGEVTRPK--GLRVGYLSQEPPLDP 79 (530)
T ss_pred eeEEeeC---CceeecCCcce-eCCCCEEEEEC-CCCCCHHHH-HHHHcCCCcCCCCeEeecC--CceEEEeCCCCCcCC
Confidence 5677784 47899999999 99999999999 999999999 6778877765 2221111 01111122222000
Q ss_pred -----------------------------------cc------------cCCCCCchhHHHhchhcccCCCccCCCCCCC
Q psy17517 85 -----------------------------------AF------------LGPENPEEPYLQGVNYNCVAPGKRFQPMTNL 117 (163)
Q Consensus 85 -----------------------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 117 (163)
.+ +..+.+.+.++..+++ ... ++++.+|
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~----~~~-~~~~~~L 154 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGF----PDE-DRPVSSL 154 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCC----Ccc-cCchhhc
Confidence 00 0011122234555555 444 8899999
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 118 SGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 118 SgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|||||.||++|++| +.+|++|+|||||++||..+..-+-++
T Consensus 155 SGG~r~Rv~LA~aL----~~~pDlLLLDEPTNHLD~~~i~WLe~~ 195 (530)
T COG0488 155 SGGWRRRVALARAL----LEEPDLLLLDEPTNHLDLESIEWLEDY 195 (530)
T ss_pred CHHHHHHHHHHHHH----hcCCCEEEEcCCCcccCHHHHHHHHHH
Confidence 99999999999999 588999999999999999998766543
No 349
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=7e-26 Score=214.06 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=100.5
Q ss_pred cceeeCCC-CCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc---c--cc--ccccCH-HHHHHhc--
Q psy17517 8 AQAFLGPE-NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR---I--AT--IRSLGL-EDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~-~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~---~--~~--i~~~~~-~~~~~~~-- 76 (163)
+++|.|+. .+++.+|+|||++ +++||+++|+| ||||||||| ++++.++.. + ++ +.+.+. .++++.+
T Consensus 764 nl~~~~~~~~~~~~iL~~vs~~-i~~Ge~~aI~G-~sGaGKSTL-L~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~y 840 (1394)
T TIGR00956 764 NLTYEVKIKKEKRVILNNVDGW-VKPGTLTALMG-ASGAGKTTL-LNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGY 840 (1394)
T ss_pred eeEEEecCCCCCcEeeeCCEEE-EECCEEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEECChhhhcceee
Confidence 44566652 2246799999999 99999999999 999999999 666777765 2 22 233322 2455555
Q ss_pred cccCCCccccc--------------C-CCC-C-------chhHHHhchhcccCCCccCCCCC----CCCHHHHHHHHHHH
Q psy17517 77 LAQNQSAQAFL--------------G-PEN-P-------EEPYLQGVNYNCVAPGKRFQPMT----NLSGGEKTVAALAL 129 (163)
Q Consensus 77 ~~q~~~~~~~~--------------~-~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~----~LSgGqkQrvaiAr 129 (163)
++|++ ..+. . +.. . .+++++.+++ .+..+..+. .||||||||++||+
T Consensus 841 v~Q~~--~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L----~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 841 VQQQD--LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM----ESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred ecccc--cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC----hhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 45543 2221 1 000 0 1235556666 555566554 79999999999999
Q ss_pred HHHhcccCCCC-EEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAP-FFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~-lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+ .+|+ +++||||||+||+.++..+++.|
T Consensus 915 aL~----~~P~~iLlLDEPTsgLD~~~~~~i~~~L 945 (1394)
T TIGR00956 915 ELV----AKPKLLLFLDEPTSGLDSQTAWSICKLM 945 (1394)
T ss_pred HHH----cCCCeEEEEcCCCCCCCHHHHHHHHHHH
Confidence 996 7897 99999999999999999888753
No 350
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=4.8e-26 Score=180.66 Aligned_cols=135 Identities=18% Similarity=0.230 Sum_probs=100.4
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc----ccccccCHH----HHHHhc-cccCCCcccccC
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI----ATIRSLGLE----DLRSMA-LAQNQSAQAFLG 88 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~----~~i~~~~~~----~~~~~~-~~q~~~~~~~~~ 88 (163)
..++++||||+ |++|++++++| +|||||||+ ++|+.|+..| ..+.+..+- ++-+++ ....+..++.+.
T Consensus 36 ~~~AVqdisf~-IP~G~ivgflG-aNGAGKSTt-LKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFE-IPKGEIVGFLG-ANGAGKSTT-LKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeee-cCCCcEEEEEc-CCCCcchhh-HHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 45799999999 99999999999 999999999 7889999888 234444332 222333 111222233321
Q ss_pred CC--------------------CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeeccc
Q psy17517 89 PE--------------------NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEID 148 (163)
Q Consensus 89 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPt 148 (163)
.. ++...+.+.+++ ++....+++.||-|||.|+.+|.+| +|+|++|+|||||
T Consensus 113 lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl----~~~lk~~vr~LSlGqRmraeLaaaL----Lh~p~VLfLDEpT 184 (325)
T COG4586 113 LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDL----EGFLKWPVRKLSLGQRMRAELAAAL----LHPPKVLFLDEPT 184 (325)
T ss_pred chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcc----hhhhhhhhhhccchHHHHHHHHHHh----cCCCcEEEecCCc
Confidence 11 111224455555 7788899999999999999999999 6999999999999
Q ss_pred CCCCHHHHHHHHhhC
Q psy17517 149 AALDNTNIGKVASYI 163 (163)
Q Consensus 149 s~LD~~~~~~i~~~l 163 (163)
-+||...+..+.+.+
T Consensus 185 vgLDV~aq~~ir~Fl 199 (325)
T COG4586 185 VGLDVNAQANIREFL 199 (325)
T ss_pred cCcchhHHHHHHHHH
Confidence 999999999887753
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=3.4e-25 Score=210.97 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=98.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCC--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQ-- 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~-- 81 (163)
+.+|.|+.+ ..++|+|+||+ |++||+++|+| ||||||||| ++++.|+.+| +.+. .+ .++ ++|+|
T Consensus 641 ~~~~~~~~~-~~~~l~~isl~-i~~G~~v~IvG-~~GsGKSTL-l~~l~g~~~~~~G~i~-~~-----g~i~yv~Q~~~l 710 (1522)
T TIGR00957 641 NATFTWARD-LPPTLNGITFS-IPEGALVAVVG-QVGCGKSSL-LSALLAEMDKVEGHVH-MK-----GSVAYVPQQAWI 710 (1522)
T ss_pred EeEEEcCCC-CCceeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCccCCcEEE-EC-----CEEEEEcCCccc
Confidence 568899743 35799999999 99999999999 999999999 6777888776 2221 11 123 45544
Q ss_pred ------CcccccCCCCCc---hhHHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEee
Q psy17517 82 ------SAQAFLGPENPE---EPYLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLD 145 (163)
Q Consensus 82 ------~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLD 145 (163)
+|..+ +..... +++++.+++. .+.....++++.+||||||||++||||++ .+|++++||
T Consensus 711 ~~~Ti~eNI~~-g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~----~~~~illLD 785 (1522)
T TIGR00957 711 QNDSLRENILF-GKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY----SNADIYLFD 785 (1522)
T ss_pred cCCcHHHHhhc-CCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEc
Confidence 11122 111111 1222322221 01123456788999999999999999995 889999999
Q ss_pred cccCCCCHHHHHHHHhh
Q psy17517 146 EIDAALDNTNIGKVASY 162 (163)
Q Consensus 146 EPts~LD~~~~~~i~~~ 162 (163)
||||+||+...+++.+.
T Consensus 786 Ep~saLD~~~~~~i~~~ 802 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEH 802 (1522)
T ss_pred CCccccCHHHHHHHHHH
Confidence 99999999999988764
No 352
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.1e-26 Score=170.24 Aligned_cols=148 Identities=23% Similarity=0.219 Sum_probs=101.5
Q ss_pred CccceeeCCCCC--CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc-------------cccccCH-
Q psy17517 6 QSAQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-------------TIRSLGL- 69 (163)
Q Consensus 6 ~~~~~f~y~~~~--~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-------------~i~~~~~- 69 (163)
...++|.-...+ .-++++++||+ ++.||++++-| |||+||||+ ++++++-+.|. ++-...+
T Consensus 9 ~~~KtFtlH~q~Gi~LpV~~~vsls-V~aGECvvL~G-~SG~GKStl-lr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr 85 (235)
T COG4778 9 NVSKTFTLHQQGGVRLPVLRNVSLS-VNAGECVVLHG-PSGSGKSTL-LRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85 (235)
T ss_pred cchhheEeeecCCEEeeeeeceeEE-ecCccEEEeeC-CCCCcHHHH-HHHHHhccCCCCceEEEEeCcchhhhhccChH
Confidence 346777664322 34799999999 99999999999 999999999 77888888761 2222222
Q ss_pred --HHHHHhc-cccCCCccccc---------------CCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHH
Q psy17517 70 --EDLRSMA-LAQNQSAQAFL---------------GPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAA 126 (163)
Q Consensus 70 --~~~~~~~-~~q~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrva 126 (163)
-++|++. ++..+.-.... +... .....+.++++ +...-.-.|.++||||||||.
T Consensus 86 ~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnl---perLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNL---PERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred HHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC---CHHHhcCCCcccCCchheehh
Confidence 2455553 44443111110 0000 01124445554 122334568999999999999
Q ss_pred HHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 127 LALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 127 iAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||.++ .+-++|+|||||++||..++..+.++|
T Consensus 163 IaRgfi----vd~pILLLDEPTasLDa~Nr~vVveli 195 (235)
T COG4778 163 IARGFI----VDYPILLLDEPTASLDATNRAVVVELI 195 (235)
T ss_pred hhhhhh----ccCceEEecCCcccccccchHHHHHHH
Confidence 999995 789999999999999999998887653
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.92 E-value=3.1e-25 Score=209.98 Aligned_cols=132 Identities=18% Similarity=0.171 Sum_probs=95.4
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc----c--cccccCH--HHHHHhc--cccCCCccccc-
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI----A--TIRSLGL--EDLRSMA--LAQNQSAQAFL- 87 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~----~--~i~~~~~--~~~~~~~--~~q~~~~~~~~- 87 (163)
+.+|+|||++ +++||+++|+| ||||||||| ++++.+...+ + .+.+.+. ..+++.+ ++|++ ..+.
T Consensus 893 ~~iL~~vs~~-i~~Gel~aL~G-~sGaGKTTL-L~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d--~~~~~ 967 (1470)
T PLN03140 893 LQLLREVTGA-FRPGVLTALMG-VSGAGKTTL-MDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQND--IHSPQ 967 (1470)
T ss_pred ceEeeCcEEE-EECCeEEEEEC-CCCCCHHHH-HHHHcCCCCCCcccceEEECCccCChHHhhhheEEEcccc--ccCCC
Confidence 4799999999 99999999999 999999999 6777777653 2 2333222 2344444 45543 2221
Q ss_pred -------------CC-CC-C-------chhHHHhchhcccCCCccCCCC-----CCCCHHHHHHHHHHHHHHhcccCCCC
Q psy17517 88 -------------GP-EN-P-------EEPYLQGVNYNCVAPGKRFQPM-----TNLSGGEKTVAALALLFAIHSYHPAP 140 (163)
Q Consensus 88 -------------~~-~~-~-------~~~~~~~~~~~~~~~~~~~~~~-----~~LSgGqkQrvaiAraL~~~~~~~p~ 140 (163)
.. .. . .+++++.+++ .+..+..+ ..||||||||++||++|+ .+|+
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL----~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~----~~P~ 1039 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVEL----DNLKDAIVGLPGVTGLSTEQRKRLTIAVELV----ANPS 1039 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCC----hhHhCCccCCCCCCCcCHHHHHHHHHHHHHh----hCCC
Confidence 11 11 1 1235566666 45555554 689999999999999996 7899
Q ss_pred EEEeecccCCCCHHHHHHHHhhC
Q psy17517 141 FFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 141 lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|||||||+||+.++..+++.|
T Consensus 1040 lL~LDEPTsgLD~~~a~~v~~~L 1062 (1470)
T PLN03140 1040 IIFMDEPTSGLDARAAAIVMRTV 1062 (1470)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988753
No 354
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=3.4e-25 Score=170.83 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=106.3
Q ss_pred CccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc
Q psy17517 6 QSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA 76 (163)
Q Consensus 6 ~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~ 76 (163)
+..+.|.-.....+++|+++|++ |+.|+|+.++| .|||||||| ++.+.|-..| .+++.++.......+
T Consensus 6 ~~~~~f~~g~~~ek~~l~~~sL~-I~~g~FvtViG-sNGAGKSTl-ln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 6 NATKTFFKGTPLEKRALNGLSLE-IAEGDFVTVIG-SNGAGKSTL-LNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred cceeeecCCChhHHHHHhcCcee-ecCCceEEEEc-CCCccHHHH-HHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence 33444444333356799999999 99999999999 999999999 5666666655 466777766544444
Q ss_pred --cccCCCcccccCC-----------------------CCCchhHHHhc-hhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 77 --LAQNQSAQAFLGP-----------------------ENPEEPYLQGV-NYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 77 --~~q~~~~~~~~~~-----------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
|||+|..-.+... ..+.+.+.+.+ .+........+.++.-|||||||-++++.|
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MA 162 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMA 162 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHH
Confidence 9999943222100 00111122221 111123667788999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
. +++|++++|||=|+||||.....+++
T Consensus 163 t----l~~pkiLLLDEHTAALDPkta~~vm~ 189 (263)
T COG1101 163 T----LHPPKILLLDEHTAALDPKTAEFVME 189 (263)
T ss_pred h----cCCCcEEEecchhhcCCcchHHHHHH
Confidence 8 58999999999999999999888876
No 355
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=3.4e-25 Score=167.69 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=108.3
Q ss_pred CccceeeCCC----CCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--c-------cccCHH
Q psy17517 6 QSAQAFLGPE----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--I-------RSLGLE 70 (163)
Q Consensus 6 ~~~~~f~y~~----~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i-------~~~~~~ 70 (163)
...++|.|.. .....+++.|||+ ++.|+..+++| .|||||||| -+|+.|+.+| ++ + .++..+
T Consensus 9 nLsKtF~~~~~lf~r~~~~AV~~vSFt-L~~~QTlaiIG-~NGSGKSTL-akMlaGmi~PTsG~il~n~~~L~~~Dy~~R 85 (267)
T COG4167 9 NLSKTFRYRTGLFRRQTVEAVKPVSFT-LREGQTLAIIG-ENGSGKSTL-AKMLAGMIEPTSGEILINDHPLHFGDYSFR 85 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhcccceEEE-ecCCcEEEEEc-cCCCcHhHH-HHHHhcccCCCCceEEECCccccccchHhh
Confidence 3466777753 1235699999999 99999999999 999999999 5678888877 11 1 122222
Q ss_pred HHHHhccccCCCcccccC------------------CCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 71 DLRSMALAQNQSAQAFLG------------------PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 71 ~~~~~~~~q~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
.-+.+++||+|...+-.. ++.+.+.+.+.+.+.....+..+-++..||.|||||||+||||.
T Consensus 86 ~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI 165 (267)
T COG4167 86 SKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI 165 (267)
T ss_pred hhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh
Confidence 233345999996544321 11122223333333223467888999999999999999999995
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
-+|+++|.||..++||...+.++.++
T Consensus 166 ----L~P~iIIaDeAl~~LD~smrsQl~NL 191 (267)
T COG4167 166 ----LRPKIIIADEALASLDMSMRSQLINL 191 (267)
T ss_pred ----cCCcEEEehhhhhhccHHHHHHHHHH
Confidence 57999999999999999999888764
No 356
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=1.3e-25 Score=184.63 Aligned_cols=112 Identities=22% Similarity=0.171 Sum_probs=81.1
Q ss_pred eecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--cccCCCccccc----------CCC--C---
Q psy17517 38 PMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA--LAQNQSAQAFL----------GPE--N--- 91 (163)
Q Consensus 38 lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~--~~q~~~~~~~~----------~~~--~--- 91 (163)
|+| ||||||||| ++++.|+.+| + ++...+. .++++ ++|++ .+|. ... .
T Consensus 1 l~G-~nGsGKSTL-l~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~ 74 (325)
T TIGR01187 1 LLG-PSGCGKTTL-LRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSY--ALFPHMTVEENVAFGLKMRKVPR 74 (325)
T ss_pred CcC-CCCCCHHHH-HHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCc--cccCCCcHHHHHHHHHhhcCCCH
Confidence 578 999999999 7788888877 2 2222222 23445 55554 2221 100 0
Q ss_pred -----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 92 -----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 92 -----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
...++++.+++ .+..++++.+||||||||++|||||+ .+|+++||||||++||+.++..+.+.|
T Consensus 75 ~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qRvalaraL~----~~p~lllLDEP~s~LD~~~~~~l~~~l 143 (325)
T TIGR01187 75 AEIKPRVLEALRLVQL----EEFADRKPHQLSGGQQQRVALARALV----FKPKILLLDEPLSALDKKLRDQMQLEL 143 (325)
T ss_pred HHHHHHHHHHHHHcCC----cchhcCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 01235566666 67788999999999999999999996 789999999999999999999887653
No 357
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=183.87 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=108.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc---------cccc-cCHHHHHHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA---------TIRS-LGLEDLRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~---------~i~~-~~~~~~~~~~- 76 (163)
+.+..|| +..+.++|||+ |.+||+.|++| +||+||||| .++++|++.|. .+.- -+.+.++..|
T Consensus 9 ~itK~f~---~~~And~V~l~-v~~GeIHaLLG-ENGAGKSTL-m~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 9 GITKRFP---GVVANDDVSLS-VKKGEIHALLG-ENGAGKSTL-MKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ccEEEcC---CEEecCceeee-ecCCcEEEEec-cCCCCHHHH-HHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 5667887 37899999999 99999999999 999999999 78899999981 2222 2334556666
Q ss_pred -cccCC---------CcccccCCCC-------------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 77 -LAQNQ---------SAQAFLGPEN-------------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 77 -~~q~~---------~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
|+|++ +|.+ .+.+. ..+++.+.+|+ .-..++++.+||=||||||.|-++|.
T Consensus 83 MVhQHF~Lv~~lTV~ENii-Lg~e~~~~~~~~~~~~~~~i~~l~~~yGl----~vdp~~~V~dLsVG~qQRVEIlKaLy- 156 (501)
T COG3845 83 MVHQHFMLVPTLTVAENII-LGLEPSKGGLIDRRQARARIKELSERYGL----PVDPDAKVADLSVGEQQRVEILKALY- 156 (501)
T ss_pred EEeeccccccccchhhhhh-hcCccccccccCHHHHHHHHHHHHHHhCC----CCCccceeecCCcchhHHHHHHHHHh-
Confidence 66665 1111 12211 11235666677 66778999999999999999999994
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++||||||||-|-|....++++.
T Consensus 157 ---r~a~iLILDEPTaVLTP~E~~~lf~~ 182 (501)
T COG3845 157 ---RGARLLILDEPTAVLTPQEADELFEI 182 (501)
T ss_pred ---cCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 88999999999999999999988765
No 358
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.6e-25 Score=169.79 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=98.0
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-----------ccccccCHHHHHHh-c--cccCCCcc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-----------ATIRSLGLEDLRSM-A--LAQNQSAQ 84 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-----------~~i~~~~~~~~~~~-~--~~q~~~~~ 84 (163)
+.+|++|||+ |++||+.+|+| |||||||||+.. +.|.... .++.++++.+..+. + .||.|...
T Consensus 17 keILkgvnL~-v~~GEvhaiMG-PNGsGKSTLa~~-i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei 93 (251)
T COG0396 17 KEILKGVNLT-VKEGEVHAIMG-PNGSGKSTLAYT-IMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEI 93 (251)
T ss_pred hhhhcCccee-EcCCcEEEEEC-CCCCCHHHHHHH-HhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccC
Confidence 5899999999 99999999999 999999999654 5555422 57888888876555 3 78888211
Q ss_pred ------ccc-----C-CCC---------CchhHHHhchhcccCCCccCCCCC-CCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 85 ------AFL-----G-PEN---------PEEPYLQGVNYNCVAPGKRFQPMT-NLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 85 ------~~~-----~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
-|. . ... ...+.++.+++. ....++++. .+|||||+|..|+.+++ .+|++.
T Consensus 94 ~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~---~~~l~R~vN~GFSGGEkKR~EilQ~~~----lePkl~ 166 (251)
T COG0396 94 PGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD---EEFLERYVNEGFSGGEKKRNEILQLLL----LEPKLA 166 (251)
T ss_pred CCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCC---HHHhhcccCCCcCcchHHHHHHHHHHh----cCCCEE
Confidence 111 0 000 012245555551 235666664 59999999999999996 579999
Q ss_pred EeecccCCCCHHHHHHHHh
Q psy17517 143 VLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~ 161 (163)
|||||.||||..+-+.+.+
T Consensus 167 ILDE~DSGLDIdalk~V~~ 185 (251)
T COG0396 167 ILDEPDSGLDIDALKIVAE 185 (251)
T ss_pred EecCCCcCccHHHHHHHHH
Confidence 9999999999999877654
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.91 E-value=3.1e-24 Score=204.04 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=90.9
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCC--------CcccccC
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQ--------SAQAFLG 88 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~--------~~~~~~~ 88 (163)
.++|+|+||+ |++||+++|+| ||||||||| ++++.|+.+| +.+. .+- +-.+++|+| +|..| +
T Consensus 439 ~~~l~~i~l~-i~~G~~~~I~G-~~GsGKSTL-l~~l~G~~~~~~G~i~-~~g---~iayv~Q~~~l~~~Ti~eNI~~-g 510 (1490)
T TIGR01271 439 TPVLKNISFK-LEKGQLLAVAG-STGSGKSSL-LMMIMGELEPSEGKIK-HSG---RISFSPQTSWIMPGTIKDNIIF-G 510 (1490)
T ss_pred CcceeeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEE-ECC---EEEEEeCCCccCCccHHHHHHh-c
Confidence 4689999999 99999999999 999999999 6777888776 2222 110 111244444 12222 2
Q ss_pred CCCCc---hhHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 89 PENPE---EPYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 89 ~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
..... ..+++.+++.. +.....++++.+|||||||||+||||++ .+|+++|||||||+||+....+
T Consensus 511 ~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~----~~~~illLDep~saLD~~~~~~ 586 (1490)
T TIGR01271 511 LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVY----KDADLYLLDSPFTHLDVVTEKE 586 (1490)
T ss_pred cccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHH
Confidence 11111 12333333210 1122345678999999999999999995 7899999999999999999999
Q ss_pred HHh
Q psy17517 159 VAS 161 (163)
Q Consensus 159 i~~ 161 (163)
+.+
T Consensus 587 i~~ 589 (1490)
T TIGR01271 587 IFE 589 (1490)
T ss_pred HHH
Confidence 875
No 360
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=1.7e-24 Score=206.27 Aligned_cols=131 Identities=21% Similarity=0.188 Sum_probs=90.7
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCC--------ccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQS--------AQA 85 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~--------~~~ 85 (163)
+.++|+|+||+ |++||+++|+| ||||||||| ++++.++.+| +.+. ++.++ ++|+|. +..
T Consensus 672 ~~~iL~~isl~-i~~G~~~~IiG-~nGsGKSTL-L~~i~G~~~~~~G~i~------~~~~i~yv~Q~~~l~~~Tv~enI~ 742 (1560)
T PTZ00243 672 PKVLLRDVSVS-VPRGKLTVVLG-ATGSGKSTL-LQSLLSQFEISEGRVW------AERSIAYVPQQAWIMNATVRGNIL 742 (1560)
T ss_pred CceeEeeeEEE-ECCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCCcEEE------ECCeEEEEeCCCccCCCcHHHHHH
Confidence 35699999999 99999999999 999999999 6677777766 3332 12334 455441 111
Q ss_pred ccCCCC--CchhHHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 86 FLGPEN--PEEPYLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 86 ~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
+..... .....++.+++. .+.....++++.+|||||||||+|||||+ .+|+++|||||||+||+...
T Consensus 743 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~----~~p~illLDEP~saLD~~~~ 818 (1560)
T PTZ00243 743 FFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVY----ANRDVYLLDDPLSALDAHVG 818 (1560)
T ss_pred cCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHH
Confidence 111110 011122222210 01134557789999999999999999995 78999999999999999988
Q ss_pred HHHHh
Q psy17517 157 GKVAS 161 (163)
Q Consensus 157 ~~i~~ 161 (163)
.++.+
T Consensus 819 ~~i~~ 823 (1560)
T PTZ00243 819 ERVVE 823 (1560)
T ss_pred HHHHH
Confidence 77654
No 361
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.90 E-value=2.6e-24 Score=203.50 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=93.5
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc----cc--c--cccccCHHH----HHHhccccCCCccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH----RI--A--TIRSLGLED----LRSMALAQNQSAQA 85 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~----~~--~--~i~~~~~~~----~~~~~~~q~~~~~~ 85 (163)
.+++|+|||++ +++||+++|+| ||||||||| ++++.++. .+ + .+.+.+..+ +++.+.+..+++..
T Consensus 73 ~~~iL~~vs~~-i~~Ge~~aIlG-~nGsGKSTL-Lk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGL-IKPGELTVVLG-RPGSGCSTL-LKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEE-EECCEEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc
Confidence 46799999999 99999999999 999999999 66677664 22 2 233433322 23334333332222
Q ss_pred cc--------------C-CC----C-C-c-------hhHHHhchhcccCCCccC-----CCCCCCCHHHHHHHHHHHHHH
Q psy17517 86 FL--------------G-PE----N-P-E-------EPYLQGVNYNCVAPGKRF-----QPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 86 ~~--------------~-~~----~-~-~-------~~~~~~~~~~~~~~~~~~-----~~~~~LSgGqkQrvaiAraL~ 132 (163)
+. . +. . . . +.+++.+++ .+..+ +.+..|||||||||+||++|+
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL----~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL----SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc----ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 21 0 00 0 0 0 124455566 44443 456889999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|++++|||||++||+.++.++.+.|
T Consensus 226 ----~~p~vlllDEPTsgLD~~~~~~i~~~L 252 (1394)
T TIGR00956 226 ----GGAKIQCWDNATRGLDSATALEFIRAL 252 (1394)
T ss_pred ----hCCCEEEEeCCCCCcCHHHHHHHHHHH
Confidence 789999999999999999999888753
No 362
>KOG0061|consensus
Probab=99.90 E-value=3.1e-24 Score=189.21 Aligned_cols=135 Identities=21% Similarity=0.206 Sum_probs=98.8
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc----c--cccc--cCHHHHHHhccccCCCccccc--
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI----A--TIRS--LGLEDLRSMALAQNQSAQAFL-- 87 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~----~--~i~~--~~~~~~~~~~~~q~~~~~~~~-- 87 (163)
.+++|+|||.+ +++||+.||+| |||||||||+.++.++...- + -+++ .+.+.+++...|..|++.++.
T Consensus 42 ~k~iL~~vsg~-~~~Gel~AimG-~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 42 TKTILKGVSGT-AKPGELLAIMG-PSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred cceeeeCcEEE-EecCeEEEEEC-CCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccc
Confidence 47899999999 99999999999 99999999954444444321 1 2333 344455665677777666652
Q ss_pred ------------CCCC---------CchhHHHhchhcccCCCccCCCC-----CCCCHHHHHHHHHHHHHHhcccCCCCE
Q psy17517 88 ------------GPEN---------PEEPYLQGVNYNCVAPGKRFQPM-----TNLSGGEKTVAALALLFAIHSYHPAPF 141 (163)
Q Consensus 88 ------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-----~~LSgGqkQrvaiAraL~~~~~~~p~l 141 (163)
.... +.+++++.+++ ...++..+ +.+|||||+||+||.=| +++|++
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL----~~~~~t~ig~~~~rgiSGGErkRvsia~El----l~~P~i 191 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGL----EKCADTLIGNPGIRGLSGGERKRVSIALEL----LTDPSI 191 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC----hhhccceecCCCCCccccchhhHHHHHHHH----HcCCCE
Confidence 1111 12346666676 44444433 57999999999999999 489999
Q ss_pred EEeecccCCCCHHHHHHHHhh
Q psy17517 142 FVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 142 llLDEPts~LD~~~~~~i~~~ 162 (163)
++|||||||||..+..++.+.
T Consensus 192 LflDEPTSGLDS~sA~~vv~~ 212 (613)
T KOG0061|consen 192 LFLDEPTSGLDSFSALQVVQL 212 (613)
T ss_pred EEecCCCCCcchhhHHHHHHH
Confidence 999999999999999887765
No 363
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.2e-24 Score=165.87 Aligned_cols=139 Identities=18% Similarity=0.208 Sum_probs=109.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc----------ccccccCHHHHHHh-c
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI----------ATIRSLGLEDLRSM-A 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~----------~~i~~~~~~~~~~~-~ 76 (163)
+++.+|. +..||+++||+ +.+||.-++|| |||+||||+ +-++.|..+| .++..++..++.+. |
T Consensus 10 ~vsVsF~---GF~Aln~ls~~-v~~Gelr~lIG-pNGAGKTT~-mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 10 GVSVSFG---GFKALNDLSFS-VDPGELRVLIG-PNGAGKTTL-MDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEEc---ceeeeeeeEEE-ecCCeEEEEEC-CCCCCceee-eeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 4556664 47899999999 99999999999 999999999 6778888777 35677777776544 4
Q ss_pred --cccCCCcccc------------------------cC----CCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHH
Q psy17517 77 --LAQNQSAQAF------------------------LG----PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAA 126 (163)
Q Consensus 77 --~~q~~~~~~~------------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrva 126 (163)
-||.|. .| .. .+++.++.+..+++ .+.++.....||.||||++.
T Consensus 84 GRKFQ~Pt--Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL----~~~~~~~A~~LSHGqKQwLE 157 (249)
T COG4674 84 GRKFQKPT--VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL----GDERDRLAALLSHGQKQWLE 157 (249)
T ss_pred CccccCCe--ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHccc----chhhhhhhhhhccchhhhhh
Confidence 577661 22 01 11233456777777 88889999999999999999
Q ss_pred HHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 127 LALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 127 iAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+..++ ++|++|++|||++++..+...+..++
T Consensus 158 IGMll~----Q~P~lLLlDEPvAGMTd~Et~~taeL 189 (249)
T COG4674 158 IGMLLA----QDPKLLLLDEPVAGMTDAETEKTAEL 189 (249)
T ss_pred hheeec----cCCcEEEecCccCCCcHHHHHHHHHH
Confidence 999995 89999999999999998887766554
No 364
>KOG0054|consensus
Probab=99.90 E-value=2.9e-23 Score=193.09 Aligned_cols=145 Identities=21% Similarity=0.300 Sum_probs=112.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+.+.+|..+ ..++|+||||+ |++||.++||| ..||||||| ...++++..+ .++....++++|+++
T Consensus 1143 ~~~~RYrp~-lp~VLk~is~~-I~p~eKVGIVG-RTGaGKSSL-~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsI 1218 (1381)
T KOG0054|consen 1143 DLSLRYRPN-LPLVLKGISFT-IKPGEKVGIVG-RTGAGKSSL-ILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSI 1218 (1381)
T ss_pred EeEEEeCCC-CcchhcCceEE-EcCCceEEEeC-CCCCCHHHH-HHHHHHhcCccCCeEEEcCeecccccHHHHHhcCee
Confidence 567789654 46899999999 99999999999 999999999 5567777776 467888999999998
Q ss_pred cccCCCcccccC-----CCCC----ch---hHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 LAQNQSAQAFLG-----PENP----EE---PYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 ~~q~~~~~~~~~-----~~~~----~~---~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|+| .+|.+ ++.. ++ ++++.+.+.. ..+....+.+.++|=||||.+|+|||| ++
T Consensus 1219 IPQdP--vLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL----Lr 1292 (1381)
T KOG0054|consen 1219 IPQDP--VLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL----LR 1292 (1381)
T ss_pred eCCCC--ceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH----hc
Confidence 66666 56632 1111 11 2566665521 123344566789999999999999999 58
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++|++|||+||++|+++-..|++.
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~t 1317 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKT 1317 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHH
Confidence 9999999999999999998887764
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.90 E-value=7.1e-24 Score=183.63 Aligned_cols=139 Identities=22% Similarity=0.246 Sum_probs=95.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSA-- 83 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~-- 83 (163)
+.+|.|++. +.+++++||. |.+|+.++|+| |||+||||| ++++.+...| +.+.--. .+ ++.+..|+.
T Consensus 326 ~~~~~y~~~--~~l~~~~s~~-i~~g~riaiiG-~NG~GKSTL-lk~l~g~~~~~~G~v~~g~--~v--~igyf~Q~~~~ 396 (530)
T COG0488 326 NVSKGYDGG--RLLLKDLSFR-IDRGDRIAIVG-PNGAGKSTL-LKLLAGELGPLSGTVKVGE--TV--KIGYFDQHRDE 396 (530)
T ss_pred ccccccCCC--ceeecCceEE-ecCCCEEEEEC-CCCCCHHHH-HHHHhhhcccCCceEEeCC--ce--EEEEEEehhhh
Confidence 567788643 7899999999 99999999999 999999999 5666554443 1111000 00 111111111
Q ss_pred -----ccc-----cCC---CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCC
Q psy17517 84 -----QAF-----LGP---ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA 150 (163)
Q Consensus 84 -----~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~ 150 (163)
.++ ..+ +......+..+++. .+...+++..||||||-|+.+|+.++ .+|-+|||||||++
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~---~~~~~~~v~~LSGGEk~Rl~La~ll~----~~pNvLiLDEPTNh 469 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT---GEDQEKPVGVLSGGEKARLLLAKLLL----QPPNLLLLDEPTNH 469 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCC---hHHHhCchhhcCHhHHHHHHHHHHhc----cCCCEEEEcCCCcc
Confidence 010 000 11122356666662 34557889999999999999999995 88999999999999
Q ss_pred CCHHHHHHHHhh
Q psy17517 151 LDNTNIGKVASY 162 (163)
Q Consensus 151 LD~~~~~~i~~~ 162 (163)
||..+...+.+.
T Consensus 470 LDi~s~~aLe~a 481 (530)
T COG0488 470 LDIESLEALEEA 481 (530)
T ss_pred CCHHHHHHHHHH
Confidence 999999887664
No 366
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=4.3e-24 Score=202.23 Aligned_cols=139 Identities=15% Similarity=0.159 Sum_probs=93.9
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-----cc--ccccCHHHH--HHhccccCCCccccc-
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-----AT--IRSLGLEDL--RSMALAQNQSAQAFL- 87 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-----~~--i~~~~~~~~--~~~~~~q~~~~~~~~- 87 (163)
.+.+|+|||+. |++||+++|+| ||||||||| ++++.+...+ ++ +.+.+..+. ++.+.+..+++..+.
T Consensus 177 ~~~IL~~vs~~-i~~Ge~~~llG-pnGSGKSTL-Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGI-IKPSRMTLLLG-PPSSGKTTL-LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEE-EeCCeEEEEEc-CCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 46799999999 99999999999 999999999 5667777654 12 233333222 333433333222220
Q ss_pred --------------CCC----------CC-----------------------------chhHHHhchhccc-CCCccCCC
Q psy17517 88 --------------GPE----------NP-----------------------------EEPYLQGVNYNCV-APGKRFQP 113 (163)
Q Consensus 88 --------------~~~----------~~-----------------------------~~~~~~~~~~~~~-~~~~~~~~ 113 (163)
... .. .+.+++.+++... .....++.
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 000 00 0123445555110 01123567
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 114 MTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 114 ~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+..|||||||||+||++|+ .+|++++|||||+|||+.+..++.+.|
T Consensus 334 ~rglSGGerkRVsia~aL~----~~p~vlllDEPTsGLDs~t~~~i~~~L 379 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIV----GPTKTLFMDEISTGLDSSTTYQIVKCL 379 (1470)
T ss_pred ccCCCcccceeeeehhhhc----CCCcEEEEeCCCcCccHHHHHHHHHHH
Confidence 8899999999999999995 889999999999999999999988753
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.88 E-value=1.7e-22 Score=161.77 Aligned_cols=63 Identities=29% Similarity=0.301 Sum_probs=50.3
Q ss_pred HHHhchhcccCCC-ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 96 YLQGVNYNCVAPG-KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++.+++ .. ..++++.+|||||+||++|||+|+.+ ..+|++++|||||++||+..+..+.+.|
T Consensus 152 ~L~~vgL----~~l~l~~~~~~LSgGe~QRl~LAraL~~~-~~~p~lllLDEPtsgLD~~~~~~l~~~L 215 (261)
T cd03271 152 TLCDVGL----GYIKLGQPATTLSGGEAQRIKLAKELSKR-STGKTLYILDEPTTGLHFHDVKKLLEVL 215 (261)
T ss_pred HHHHcCC----chhhhcCccccCCHHHHHHHHHHHHHhcC-CCCCcEEEEECCCCCCCHHHHHHHHHHH
Confidence 3444455 44 46888999999999999999999732 1148999999999999999999887753
No 368
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.88 E-value=4.3e-23 Score=160.28 Aligned_cols=139 Identities=19% Similarity=0.145 Sum_probs=84.0
Q ss_pred cCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--cccccCHHH-H-----HHhc--cccCCCcccccC--CC
Q psy17517 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--TIRSLGLED-L-----RSMA--LAQNQSAQAFLG--PE 90 (163)
Q Consensus 23 ~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~i~~~~~~~-~-----~~~~--~~q~~~~~~~~~--~~ 90 (163)
.+|+|+....|++++++| |||||||||+..+.+.++.+. ........+ + ...+ +||.+....... ..
T Consensus 18 ~~i~~~~~~~~~~~~i~G-~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~g 96 (213)
T cd03279 18 QVIDFTGLDNNGLFLICG-PTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRG 96 (213)
T ss_pred eEEeCCCCCccCEEEEEC-CCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecC
Confidence 566676123589999999 999999999554443444221 111001111 1 1112 555553322210 11
Q ss_pred CCchhHHHhchhccc-CCCccCCCCCCCCHHHHHHHHHHHHHHhcc-c-----CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 91 NPEEPYLQGVNYNCV-APGKRFQPMTNLSGGEKTVAALALLFAIHS-Y-----HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 91 ~~~~~~~~~~~~~~~-~~~~~~~~~~~LSgGqkQrvaiAraL~~~~-~-----~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
...+.+.+.+.+... .....++++.+||+||+||+++||+|+..+ + .+|+++||||||++||+.....+.+.
T Consensus 97 l~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~ 175 (213)
T cd03279 97 LDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATA 175 (213)
T ss_pred CCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 111222221111000 145678899999999999999999998532 1 36899999999999999999988764
No 369
>KOG0927|consensus
Probab=99.88 E-value=1e-22 Score=173.48 Aligned_cols=144 Identities=20% Similarity=0.223 Sum_probs=100.3
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cccccc---CHHHHHHhccccCC
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSL---GLEDLRSMALAQNQ 81 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~---~~~~~~~~~~~q~~ 81 (163)
.+++|.|+++ ..++++++|- |..++.+++|| |||+||||| ++++.+...| +.++.- -...+.++...+-+
T Consensus 393 ~nv~F~y~~~--~~iy~~l~fg-id~~srvAlVG-PNG~GKsTL-lKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ld 467 (614)
T KOG0927|consen 393 QNVSFGYSDN--PMIYKKLNFG-IDLDSRVALVG-PNGAGKSTL-LKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLD 467 (614)
T ss_pred eccccCCCCc--chhhhhhhcc-cCcccceeEec-CCCCchhhh-HHHHhhccccccccccccccccchhhhhhhHhhcC
Confidence 4788999865 3899999999 99999999999 999999999 6667776665 222110 01111111111111
Q ss_pred ----Ccccc---cCCCCCchh---HHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCC
Q psy17517 82 ----SAQAF---LGPENPEEP---YLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA 150 (163)
Q Consensus 82 ----~~~~~---~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~ 150 (163)
....+ +....+.++ ++.++|+ . +..+.++.+||+|||.||++||.+ ++.|.+|+|||||++
T Consensus 468 l~~s~le~~~~~~~~~~~~e~~r~ilgrfgL----tgd~q~~p~~~LS~Gqr~rVlFa~l~----~kqP~lLlLDEPtnh 539 (614)
T KOG0927|consen 468 LDKSSLEFMMPKFPDEKELEEMRSILGRFGL----TGDAQVVPMSQLSDGQRRRVLFARLA----VKQPHLLLLDEPTNH 539 (614)
T ss_pred cchhHHHHHHHhccccchHHHHHHHHHHhCC----CccccccchhhcccccchhHHHHHHH----hcCCcEEEecCCCcC
Confidence 00000 111122222 5667777 5 456778999999999999999999 488999999999999
Q ss_pred CCHHHHHHHHhhC
Q psy17517 151 LDNTNIGKVASYI 163 (163)
Q Consensus 151 LD~~~~~~i~~~l 163 (163)
||..+...+.+.|
T Consensus 540 LDi~tid~laeai 552 (614)
T KOG0927|consen 540 LDIETIDALAEAI 552 (614)
T ss_pred CCchhHHHHHHHH
Confidence 9999988777643
No 370
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=5.1e-22 Score=156.40 Aligned_cols=53 Identities=53% Similarity=0.804 Sum_probs=45.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.++++..||||||||++|||+++....++|+++++||||++||+..+..+.+.
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~ 204 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANM 204 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHH
Confidence 46788999999999999999997321246899999999999999999988765
No 371
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.87 E-value=2e-22 Score=175.16 Aligned_cols=137 Identities=26% Similarity=0.306 Sum_probs=92.2
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccccccc-ccCHHHHHHhccccCC--------CcccccC
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIR-SLGLEDLRSMALAQNQ--------SAQAFLG 88 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~-~~~~~~~~~~~~~q~~--------~~~~~~~ 88 (163)
+...+++.+++ +++||.+-|.| ||||||||| ++.++|+.+-..-+ ..+ .+-+.-.++|.| +...|..
T Consensus 405 ~~~ll~~l~~~-v~~G~~llI~G-~SG~GKTsL-lRaiaGLWP~g~G~I~~P-~~~~~lflpQ~PY~p~GtLre~l~YP~ 480 (604)
T COG4178 405 GQTLLSELNFE-VRPGERLLITG-ESGAGKTSL-LRALAGLWPWGSGRISMP-ADSALLFLPQRPYLPQGTLREALCYPN 480 (604)
T ss_pred CCeeeccceee-eCCCCEEEEEC-CCCCCHHHH-HHHHhccCccCCCceecC-CCCceEEecCCCCCCCccHHHHHhCCC
Confidence 35899999999 99999999999 999999999 77899998762211 111 000111133433 1111111
Q ss_pred C-----CCCchhHHHhchhcccCC--CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 89 P-----ENPEEPYLQGVNYNCVAP--GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 89 ~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
. +....+++..+++..... +..+.=-..||+|||||+++||.| +++|++++|||.|||||+.++.++.+
T Consensus 481 ~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil----L~kP~~v~LDEATsALDe~~e~~l~q 556 (604)
T COG4178 481 AAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL----LHKPKWVFLDEATSALDEETEDRLYQ 556 (604)
T ss_pred CCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH----HcCCCEEEEecchhccChHHHHHHHH
Confidence 1 111223566666521100 111222468999999999999999 59999999999999999999998876
Q ss_pred h
Q psy17517 162 Y 162 (163)
Q Consensus 162 ~ 162 (163)
.
T Consensus 557 ~ 557 (604)
T COG4178 557 L 557 (604)
T ss_pred H
Confidence 5
No 372
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=2.1e-21 Score=149.58 Aligned_cols=134 Identities=21% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--cccccCHHHHHHh------c--cccCCCcccccC
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--TIRSLGLEDLRSM------A--LAQNQSAQAFLG 88 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~i~~~~~~~~~~~------~--~~q~~~~~~~~~ 88 (163)
...+++++++ +.+| +++++| ||||||||++-.+...+.... ..+.....++.+. + .|++.. .+ .
T Consensus 9 fr~~~~~~l~-f~~g-l~~i~G-~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~--~~-~ 82 (198)
T cd03276 9 FMCHRHLQIE-FGPR-VNFIVG-NNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG--LD-A 82 (198)
T ss_pred ccceeeeEEe-cCCC-eEEEEC-CCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC--cc-C
Confidence 3455778888 8887 788999 999999999533322222110 1111122222111 1 233321 11 1
Q ss_pred CCCCch--hHH-HhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 89 PENPEE--PYL-QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 89 ~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
...... ..+ +.+.. ....++++.+||+|||||++||++++.+.+.+|+++||||||++||+..+..+.+.
T Consensus 83 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~ 155 (198)
T cd03276 83 NPLCVLSQDMARSFLTS----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDL 155 (198)
T ss_pred CcCCHHHHHHHHHHhcc----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHH
Confidence 011111 112 22222 45678899999999999999999997554579999999999999999999888764
No 373
>KOG0054|consensus
Probab=99.86 E-value=7.4e-22 Score=183.76 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=101.3
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-ccc--cccCHHHHHHhccccCC--
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-ATI--RSLGLEDLRSMALAQNQ-- 81 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~~i--~~~~~~~~~~~~~~q~~-- 81 (163)
.+-+|++...+..+.|+||||+ |++|+.++++| +-|||||+|+.++++-+... +.+ .+. ..++.|.|
T Consensus 522 ~~~sfsW~~~~~~~tL~dIn~~-i~~G~lvaVvG-~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------iaYv~Q~pWI 593 (1381)
T KOG0054|consen 522 KNGSFSWDSESPEPTLKDINFE-IKKGQLVAVVG-PVGSGKSSLLSAILGEMPKLSGSVAVNGS------VAYVPQQPWI 593 (1381)
T ss_pred eeeeEecCCCCCcccccceeEE-ecCCCEEEEEC-CCCCCHHHHHHHHhcCcccccceEEEcCe------EEEeccccHh
Confidence 3567788654455699999999 99999999999 99999999965555544443 211 111 11244544
Q ss_pred ------CcccccCCCC--CchhHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeec
Q psy17517 82 ------SAQAFLGPEN--PEEPYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE 146 (163)
Q Consensus 82 ------~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDE 146 (163)
+|.+|..+-+ +-+.+++.+.+.. +......+++-+|||||||||++|||+ +++.++++||.
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAV----Y~~adIYLLDD 669 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV----YQDADIYLLDD 669 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHH----hccCCEEEEcC
Confidence 4555533222 2233555555421 112345688999999999999999999 58999999999
Q ss_pred ccCCCCHHHHHHHHh
Q psy17517 147 IDAALDNTNIGKVAS 161 (163)
Q Consensus 147 Pts~LD~~~~~~i~~ 161 (163)
|.||+|...-+++.+
T Consensus 670 plSAVDahvg~~if~ 684 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFE 684 (1381)
T ss_pred cchhhhHhhhHHHHH
Confidence 999999999888775
No 374
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=6.4e-22 Score=153.99 Aligned_cols=56 Identities=57% Similarity=1.004 Sum_probs=47.5
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 107 PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 107 ~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+..+.++..||+|||||++|||+++++...+|+++++||||++||+.++..+.+.
T Consensus 118 ~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~ 173 (212)
T cd03274 118 PKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANY 173 (212)
T ss_pred ccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 55667788999999999999999997421235899999999999999999988775
No 375
>KOG0059|consensus
Probab=99.86 E-value=6.3e-22 Score=180.74 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=108.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc---------cccc-cCHHHHHHhcc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA---------TIRS-LGLEDLRSMAL 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~---------~i~~-~~~~~~~~~~~ 77 (163)
.....|+.. ..|++++|+. |++||+++++| +|||||||+ .+|+.|...|. ++.. .+..+.++.++
T Consensus 569 ~L~k~y~~~--~~Av~~ls~~-V~~gecfgLLG-~NGAGKtT~-f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG 643 (885)
T KOG0059|consen 569 NLSKVYGGK--DGAVRGLSFA-VPPGECFGLLG-VNGAGKTTT-FKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG 643 (885)
T ss_pred ceeeeecch--hhhhcceEEE-ecCCceEEEec-CCCCCchhh-HHHHhCCccCCcceEEEecCccccccchhhhhhhcc
Confidence 345566542 2299999998 99999999999 999999999 78999999881 2222 12233666676
Q ss_pred ccCCCcccccCC------------CC--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAFLGP------------EN--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~~~~------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+=+|.+.++... +. ..+..++.+++ .+..++++..+|||+|+|+++|-|++ .
T Consensus 644 yCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L----~~~~~~~~~~ySgG~kRkLs~aiali----g 715 (885)
T KOG0059|consen 644 YCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGL----GPYANKQVRTYSGGNKRRLSFAIALI----G 715 (885)
T ss_pred cCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCC----hhhhccchhhCCCcchhhHHHHHHHh----c
Confidence 555554444110 10 11335666677 78889999999999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|++++|||||+|+||.+++.+++++
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii 741 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDII 741 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999998764
No 376
>KOG0927|consensus
Probab=99.85 E-value=9.9e-22 Score=167.50 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=90.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc------cccCHHH--------
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI------RSLGLED-------- 71 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i------~~~~~~~-------- 71 (163)
+.+++|++ ...++|++|+ +.+|+.++|+| +|||||||++ +.+++-..| ..+ .+.....
T Consensus 80 sls~s~~g---~~l~kd~~~E-l~~g~rygLiG-~nG~Gkst~L-~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~ 153 (614)
T KOG0927|consen 80 SLSLSFHG---VELIKDVTLE-LNRGRRYGLIG-PNGSGKSTFL-RAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVV 153 (614)
T ss_pred eeeeccCC---ceeeeeeeEE-ecCCceEEEEc-CCCCcHhHHH-HHHhcCCCCCCcccchhhhcccCCCchHHHHHHHh
Confidence 45566763 7899999999 99999999999 9999999994 555554443 111 1111111
Q ss_pred -----HHHhc------cccCCCc-------cccc-----CCCCCc---hhHHHhchhcccCCCccCCCCCCCCHHHHHHH
Q psy17517 72 -----LRSMA------LAQNQSA-------QAFL-----GPENPE---EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVA 125 (163)
Q Consensus 72 -----~~~~~------~~q~~~~-------~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrv 125 (163)
.+.++ ..+..+. .++. ..+..+ ..++..+++. .+..++....|||||+.|+
T Consensus 154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~---~~m~~k~~~~~SgGwrmR~ 230 (614)
T KOG0927|consen 154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFL---SEMQDKKVKDLSGGWRMRA 230 (614)
T ss_pred hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCC---HhHHHHHhhccCchHHHHH
Confidence 11111 0000000 0000 000000 1134444441 4566788999999999999
Q ss_pred HHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 126 ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 126 aiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++||+| +.+|++|+|||||++||++...-+-++
T Consensus 231 aLAr~L----f~kP~LLLLDEPtnhLDleA~~wLee~ 263 (614)
T KOG0927|consen 231 ALARAL----FQKPDLLLLDEPTNHLDLEAIVWLEEY 263 (614)
T ss_pred HHHHHH----hcCCCEEEecCCccCCCHHHHHHHHHH
Confidence 999999 588999999999999999988765443
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=6.3e-21 Score=151.43 Aligned_cols=55 Identities=38% Similarity=0.738 Sum_probs=46.6
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 108 GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 108 ~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+..+.++.+||+|||||++|||+|+..-+.+|+++++||||++||+..+..+.+.
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~ 212 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRM 212 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 3456789999999999999999997311257899999999999999999988775
No 378
>KOG0062|consensus
Probab=99.84 E-value=7.8e-22 Score=167.29 Aligned_cols=135 Identities=24% Similarity=0.300 Sum_probs=89.6
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh----cccccccccccCHH---------HHHHhccccCCCcc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF----AIHRIATIRSLGLE---------DLRSMALAQNQSAQ 84 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~----~l~~~~~i~~~~~~---------~~~~~~~~q~~~~~ 84 (163)
++.+|.+-+++ +..|..++++| +||+|||||++.+.. +++.+.++.+.... ..|...+.+...-+
T Consensus 92 ~k~LL~~a~L~-L~~GrRYGLvG-rNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~ 169 (582)
T KOG0062|consen 92 GKILLNKANLT-LSRGRRYGLVG-RNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELL 169 (582)
T ss_pred chhhhcCCcee-eecccccceeC-CCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhh
Confidence 47899999999 99999999999 999999999544433 22222233322221 11222233332111
Q ss_pred cccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 85 AFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
.-...+.....++..+|+. .+...++..+||||.|-|+++|||| ..+|++|+|||||+.||..+..-+-+
T Consensus 170 ~~~~l~ei~~~~L~glGFt---~emq~~pt~slSGGWrMrlaLARAl----f~~pDlLLLDEPTNhLDv~av~WLe~ 239 (582)
T KOG0062|consen 170 AGLTLEEIYDKILAGLGFT---PEMQLQPTKSLSGGWRMRLALARAL----FAKPDLLLLDEPTNHLDVVAVAWLEN 239 (582)
T ss_pred ccchHHHHHHHHHHhCCCC---HHHHhccccccCcchhhHHHHHHHH----hcCCCEEeecCCcccchhHHHHHHHH
Confidence 1000000011156677772 3445677899999999999999999 58999999999999999988765543
No 379
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=2.3e-21 Score=151.88 Aligned_cols=133 Identities=17% Similarity=0.129 Sum_probs=95.4
Q ss_pred CCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--c--ccccCHHHHHHhccccCC----Ccccc-
Q psy17517 16 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--T--IRSLGLEDLRSMALAQNQ----SAQAF- 86 (163)
Q Consensus 16 ~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~--i~~~~~~~~~~~~~~q~~----~~~~~- 86 (163)
....++|+||||+ +.+||.++||| +|||||||| ++++.++++|. . +++.-..-+.-...|++. +|..+
T Consensus 37 ~~~~~aL~disf~-i~~Ge~vGiiG-~NGaGKSTL-lkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~ 113 (249)
T COG1134 37 VAEFWALKDISFE-IYKGERVGIIG-HNGAGKSTL-LKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLR 113 (249)
T ss_pred cceEEEecCceEE-EeCCCEEEEEC-CCCCcHHHH-HHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHH
Confidence 3357899999999 99999999999 999999999 78899999982 2 221110011111244443 12111
Q ss_pred ---cCCC-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 87 ---LGPE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 87 ---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
.+.. ...+++.+-..+ .+..++++.++|.||+-|+++|-|.. .+|++||+||..+.-|+.-+++
T Consensus 114 ~~~~G~~~~ei~~~~~eIieFaEL----G~fi~~PvktYSSGM~aRLaFsia~~----~~pdILllDEvlavGD~~F~~K 185 (249)
T COG1134 114 GLILGLTRKEIDEKVDEIIEFAEL----GDFIDQPVKTYSSGMYARLAFSVATH----VEPDILLLDEVLAVGDAAFQEK 185 (249)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHH----HHHhhCchhhccHHHHHHHHHhhhhh----cCCCEEEEehhhhcCCHHHHHH
Confidence 2221 122334444455 67889999999999999999999996 6799999999999999987665
Q ss_pred H
Q psy17517 159 V 159 (163)
Q Consensus 159 i 159 (163)
=
T Consensus 186 ~ 186 (249)
T COG1134 186 C 186 (249)
T ss_pred H
Confidence 3
No 380
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=1.7e-20 Score=148.71 Aligned_cols=52 Identities=87% Similarity=1.302 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 111 FQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 111 ~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+.++.+||+|||||++|||+++...+.+|+++||||||++||+..+..+.+.
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~ 201 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASY 201 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHH
Confidence 3445899999999999999998533346999999999999999999888764
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.80 E-value=1.4e-19 Score=139.94 Aligned_cols=132 Identities=20% Similarity=0.129 Sum_probs=78.5
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHH---hcccccccccc-cCHHHH-----HHhc--cccCCCcccccCCC
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL---FAIHRIATIRS-LGLEDL-----RSMA--LAQNQSAQAFLGPE 90 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~---~~l~~~~~i~~-~~~~~~-----~~~~--~~q~~~~~~~~~~~ 90 (163)
.+..+++ +.+| +++++| |||||||||+..+. ++...+..... .+...+ +..+ +|+++...-|...
T Consensus 13 ~~~~~l~-~~~g-~~~i~G-~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~- 88 (204)
T cd03240 13 HERSEIE-FFSP-LTLIVG-QNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTIT- 88 (204)
T ss_pred cCceEEe-cCCC-eEEEEC-CCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEE-
Confidence 3445577 7787 999999 99999999954432 34443322110 011111 1112 5555521112100
Q ss_pred CCchhHHHhchhc--ccCCCccCCCCCCCCHHHHHH------HHHHHHHHhcccCCCCEEEeecccCCCCHHHHH-HHHh
Q psy17517 91 NPEEPYLQGVNYN--CVAPGKRFQPMTNLSGGEKTV------AALALLFAIHSYHPAPFFVLDEIDAALDNTNIG-KVAS 161 (163)
Q Consensus 91 ~~~~~~~~~~~~~--~~~~~~~~~~~~~LSgGqkQr------vaiAraL~~~~~~~p~lllLDEPts~LD~~~~~-~i~~ 161 (163)
+...+.+.+... .......++.+..||+||+|| +++||+++ .+|+++++||||++||+..+. .+.+
T Consensus 89 -r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~----~~p~illlDEP~~~LD~~~~~~~l~~ 163 (204)
T cd03240 89 -RSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFG----SNCGILALDEPTTNLDEENIEESLAE 163 (204)
T ss_pred -EEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhc----cCCCEEEEcCCccccCHHHHHHHHHH
Confidence 000112221110 000223467889999999996 68888985 789999999999999999988 7766
Q ss_pred h
Q psy17517 162 Y 162 (163)
Q Consensus 162 ~ 162 (163)
+
T Consensus 164 ~ 164 (204)
T cd03240 164 I 164 (204)
T ss_pred H
Confidence 4
No 382
>KOG0060|consensus
Probab=99.80 E-value=1.1e-19 Score=156.15 Aligned_cols=144 Identities=23% Similarity=0.279 Sum_probs=95.1
Q ss_pred ceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCC---
Q psy17517 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQ--- 81 (163)
Q Consensus 9 ~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~--- 81 (163)
+.+.-|++ +..+++|+||+ |+.|+.+-|.| |||||||.| +++++++++. +.+.... +--...+ ++|.|
T Consensus 439 v~l~tPt~-g~~lie~Ls~~-V~~g~~LLItG-~sG~GKtSL-lRvlggLWp~~~G~l~k~~-~~~~~~lfflPQrPYmt 513 (659)
T KOG0060|consen 439 VSLSTPTN-GDLLIENLSLE-VPSGQNLLITG-PSGCGKTSL-LRVLGGLWPSTGGKLTKPT-DGGPKDLFFLPQRPYMT 513 (659)
T ss_pred eeecCCCC-CceeeeeeeeE-ecCCCeEEEEC-CCCCchhHH-HHHHhcccccCCCeEEecc-cCCCCceEEecCCCCcc
Confidence 45566776 56789999999 99999999999 999999999 7889999985 2221110 0000112 44554
Q ss_pred ----CcccccCCC--------CCc---hhHHHhchhcccC--CC-----ccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 82 ----SAQAFLGPE--------NPE---EPYLQGVNYNCVA--PG-----KRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 82 ----~~~~~~~~~--------~~~---~~~~~~~~~~~~~--~~-----~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
..|+.++.. ..+ ..+++.+++.... .+ ....=...||+|||||+++||.+ +++|
T Consensus 514 ~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf----y~kP 589 (659)
T KOG0060|consen 514 LGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF----YHKP 589 (659)
T ss_pred ccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH----hcCC
Confidence 122222210 111 2244444441100 01 11122478999999999999999 5899
Q ss_pred CEEEeecccCCCCHHHHHHHHh
Q psy17517 140 PFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~ 161 (163)
++-||||-|||+|...+..+-+
T Consensus 590 k~AiLDE~TSAv~~dvE~~~Yr 611 (659)
T KOG0060|consen 590 KFAILDECTSAVTEDVEGALYR 611 (659)
T ss_pred ceEEeechhhhccHHHHHHHHH
Confidence 9999999999999999887654
No 383
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=152.26 Aligned_cols=141 Identities=19% Similarity=0.185 Sum_probs=94.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCC-----CeEEeecCCCCChHHHHHHHHHhcccccccccccCHH-HHHHhccccCC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPG-----KRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLE-DLRSMALAQNQ 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~G-----e~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~-~~~~~~~~q~~ 81 (163)
..-+.||.- .+.+.++.|+ ++.| |+++++| |||-||||| .+++.|...|.+-...+.. ++.-+.+..+.
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~-V~~G~i~~gEvigilG-pNgiGKTTF-vk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~ 414 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLE-VEEGEIYDGEVIGILG-PNGIGKTTF-VKLLAGVIKPDEGSEEDLKVSYKPQYISPDY 414 (591)
T ss_pred ceeeecchh--eeecCceEEE-ecCCeeecceEEEEEC-CCCcchHHH-HHHHhccccCCCCCCccceEeecceeecCCC
Confidence 345678753 5688899998 7665 6799999 999999999 6677777766322211111 11111111111
Q ss_pred ---CcccccCC-------CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCC
Q psy17517 82 ---SAQAFLGP-------ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAAL 151 (163)
Q Consensus 82 ---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~L 151 (163)
-.+++... .-...+++.-+.+ ....++++..|||||.||||||-+|+ ++.++++||||++.|
T Consensus 415 ~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l----~~i~e~~v~~LSGGELQRvaIaa~L~----reADlYllDEPSA~L 486 (591)
T COG1245 415 DGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL----EDLLERPVDELSGGELQRVAIAAALS----READLYLLDEPSAYL 486 (591)
T ss_pred CCcHHHHHHHhhhhhcccchhHHhhcCccch----HHHHhcccccCCchhHHHHHHHHHhc----cccCEEEecCchhhc
Confidence 00111000 0011235555666 77889999999999999999999995 899999999999999
Q ss_pred CHHHHHHHHh
Q psy17517 152 DNTNIGKVAS 161 (163)
Q Consensus 152 D~~~~~~i~~ 161 (163)
|.+.+..+.+
T Consensus 487 DvEqR~~vak 496 (591)
T COG1245 487 DVEQRIIVAK 496 (591)
T ss_pred cHHHHHHHHH
Confidence 9998766544
No 384
>KOG0066|consensus
Probab=99.78 E-value=3.4e-19 Score=149.84 Aligned_cols=138 Identities=21% Similarity=0.197 Sum_probs=91.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCC--c
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQS--A 83 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~--~ 83 (163)
++.|.||+ ..+.+..++|- |.--..++||| |||.|||||+ +++.|-..| ..++. .-|-++++.++. .
T Consensus 591 ~VtFgy~g--qkpLFkkldFG-iDmdSRiaIVG-PNGVGKSTlL-kLL~Gkl~P~~GE~RK----nhrL~iG~FdQh~~E 661 (807)
T KOG0066|consen 591 DVTFGYPG--QKPLFKKLDFG-IDMDSRIAIVG-PNGVGKSTLL-KLLIGKLDPNDGELRK----NHRLRIGWFDQHANE 661 (807)
T ss_pred cccccCCC--CCchhhccccc-ccccceeEEEC-CCCccHHHHH-HHHhcCCCCCcchhhc----cceeeeechhhhhHH
Confidence 67899986 47899999999 99999999999 9999999995 445554444 22211 011123333321 1
Q ss_pred ccccC---------CCCC-c---hhHHHhchhcccCCCccC-CCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccC
Q psy17517 84 QAFLG---------PENP-E---EPYLQGVNYNCVAPGKRF-QPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA 149 (163)
Q Consensus 84 ~~~~~---------~~~~-~---~~~~~~~~~~~~~~~~~~-~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts 149 (163)
.+-.. .-+. . ...+-.+|+ ...++ -++..||||||-||++|-.- +..|++|||||||+
T Consensus 662 ~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL----~sHAHTikikdLSGGQKaRValaeLa----l~~PDvlILDEPTN 733 (807)
T KOG0066|consen 662 ALNGEETPVEYLQRKFNLPYQEARKQLGTFGL----ASHAHTIKIKDLSGGQKARVALAELA----LGGPDVLILDEPTN 733 (807)
T ss_pred hhccccCHHHHHHHhcCCChHHHHHHhhhhhh----hhccceEeeeecCCcchHHHHHHHHh----cCCCCEEEecCCCC
Confidence 11100 0011 1 113334444 33333 46889999999999999755 48999999999999
Q ss_pred CCCHHHHHHHHhh
Q psy17517 150 ALDNTNIGKVASY 162 (163)
Q Consensus 150 ~LD~~~~~~i~~~ 162 (163)
+||.++...+.+.
T Consensus 734 NLDIESIDALaEA 746 (807)
T KOG0066|consen 734 NLDIESIDALAEA 746 (807)
T ss_pred CcchhhHHHHHHH
Confidence 9999998776653
No 385
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.2e-19 Score=146.39 Aligned_cols=142 Identities=23% Similarity=0.238 Sum_probs=107.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
++.|.|+.+ .--+..||++ |.+||+|.++| .|||||||| .+++.|++.| ..++.-..+++|+-+
T Consensus 327 nvrfay~~~--~FhvgPiNl~-ikrGelvFliG-~NGsGKST~-~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 327 NVRFAYQDN--AFHVGPINLT-IKRGELVFLIG-GNGSGKSTL-AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred eeeeccCcc--cceecceeeE-EecCcEEEEEC-CCCCcHHHH-HHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 788999864 2578999999 99999999999 999999999 6778999988 346666778888766
Q ss_pred cccCCCcccc---cCCCC-----CchhHHHhchhcccCCCccCC--CCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeec
Q psy17517 77 LAQNQSAQAF---LGPEN-----PEEPYLQGVNYNCVAPGKRFQ--PMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE 146 (163)
Q Consensus 77 ~~q~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDE 146 (163)
+|-+. .+| .+++. ..+.+++++.+... ....+. ....||.|||+|+|+--|+. .+.+++++||
T Consensus 402 vFsDy--hLF~~ll~~e~~as~q~i~~~LqrLel~~k-tsl~d~~fs~~kLStGQkKRlAll~All----EeR~Ilv~DE 474 (546)
T COG4615 402 VFSDY--HLFDQLLGPEGKASPQLIEKWLQRLELAHK-TSLNDGRFSNLKLSTGQKKRLALLLALL----EERDILVLDE 474 (546)
T ss_pred HhhhH--hhhHhhhCCccCCChHHHHHHHHHHHHhhh-hcccCCcccccccccchHHHHHHHHHHH----hhCCeEEeeh
Confidence 44333 344 12232 12347777776211 123333 35679999999999999995 7899999999
Q ss_pred ccCCCCHHHHHHHHh
Q psy17517 147 IDAALDNTNIGKVAS 161 (163)
Q Consensus 147 Pts~LD~~~~~~i~~ 161 (163)
..+..||.-++.+.+
T Consensus 475 WAADQDPaFRR~FY~ 489 (546)
T COG4615 475 WAADQDPAFRREFYQ 489 (546)
T ss_pred hhccCChHHHHHHHH
Confidence 999999999987754
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=1.2e-18 Score=159.13 Aligned_cols=54 Identities=31% Similarity=0.370 Sum_probs=46.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..++++.+|||||+||++||++|+.. ..+|+++||||||++||+..+..+.+.|
T Consensus 821 ~l~~~~~tLSgGe~QRl~LA~aL~~~-~~~p~llILDEPtsgLD~~~~~~L~~~L 874 (924)
T TIGR00630 821 KLGQPATTLSGGEAQRIKLAKELSKR-STGRTLYILDEPTTGLHFDDIKKLLEVL 874 (924)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhhc-CCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999732 1369999999999999999999988753
No 387
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.77 E-value=3e-18 Score=130.10 Aligned_cols=46 Identities=61% Similarity=0.981 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 117 LSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 117 LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
||+||+||+++||+++.+.+.+|+++++|||+++||+..+..+.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~ 140 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDM 140 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999997544578999999999999999999988764
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=1.6e-19 Score=139.63 Aligned_cols=140 Identities=15% Similarity=0.114 Sum_probs=101.5
Q ss_pred CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc----------c--cccccCHHHHHHhc------cc
Q psy17517 17 PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI----------A--TIRSLGLEDLRSMA------LA 78 (163)
Q Consensus 17 ~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~----------~--~i~~~~~~~~~~~~------~~ 78 (163)
+-.++++++|++ +..||+-++|| +||||||..++.+.+...+. . ++-.+++++.|+-+ +|
T Consensus 18 G~vK~VD~v~lt-lnEGEi~GLVG-ESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIF 95 (330)
T COG4170 18 GWVKAVDRVSMT-LNEGEIRGLVG-ESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIF 95 (330)
T ss_pred CceEeeeeeeee-eccceeeeeec-cCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhh
Confidence 356899999999 99999999999 99999999976544333322 1 22344555544332 78
Q ss_pred cCCCcccc---------------c----------C-CCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 79 QNQSAQAF---------------L----------G-PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 79 q~~~~~~~---------------~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
|+|..-+- . + ...+.-+.+.++|+. .+.+.+..++.+|..||-|+|.||.|++
T Consensus 96 QeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIK-dHkDIM~SYP~ElTeGE~QKVMIA~A~A 174 (330)
T COG4170 96 QEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIK-DHKDIMRSYPYELTEGECQKVMIAIALA 174 (330)
T ss_pred cCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccc-cHHHHHHhCcchhccCcceeeeeehhhc
Confidence 88832111 0 0 011222467777772 2244567899999999999999999997
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|++||.||||+++|+.++.++.++|
T Consensus 175 ----nqPrLLIADEPTN~~e~~Tq~QifRLL 201 (330)
T COG4170 175 ----NQPRLLIADEPTNSMEPTTQAQIFRLL 201 (330)
T ss_pred ----cCCceEeccCCCcccCccHHHHHHHHH
Confidence 789999999999999999999988753
No 389
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=1.1e-17 Score=153.11 Aligned_cols=51 Identities=33% Similarity=0.441 Sum_probs=45.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCC---CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPA---PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p---~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..++++.+|||||+||++||++|+ ++| +++||||||++||+..+..+.+.|
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~----~~p~~~~llILDEPtsGLD~~~~~~L~~~L 876 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELS----KRSTGKTLYILDEPTTGLHFEDIRKLLEVL 876 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHh----cCCCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence 357889999999999999999996 667 999999999999999999887753
No 390
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.75 E-value=7.5e-18 Score=160.60 Aligned_cols=56 Identities=25% Similarity=0.298 Sum_probs=48.2
Q ss_pred CCc-cCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 107 PGK-RFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 107 ~~~-~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
... .++++.+|||||+||++|||+|+.. .++|+++||||||++||+..+.++.++|
T Consensus 799 ~~l~l~q~~~tLSGGE~QRV~LAraL~~~-~~~P~LLILDEPTsGLD~~~~~~Ll~lL 855 (1809)
T PRK00635 799 DYLPLGRPLSSLSGGEIQRLKLAYELLAP-SKKPTLYVLDEPTTGLHTHDIKALIYVL 855 (1809)
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhc-CCCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 444 6889999999999999999999621 2589999999999999999999988753
No 391
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=3e-18 Score=133.49 Aligned_cols=54 Identities=31% Similarity=0.469 Sum_probs=46.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..+..+.+||+||||++.++++|++..+.+|+++++||||++||+..+..+.+.
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~ 172 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDM 172 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHH
Confidence 456678999999999999888876554579999999999999999999988765
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=2.9e-18 Score=144.36 Aligned_cols=140 Identities=19% Similarity=0.138 Sum_probs=92.8
Q ss_pred ceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cccc---ccC----------HHHHH
Q psy17517 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIR---SLG----------LEDLR 73 (163)
Q Consensus 9 ~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~---~~~----------~~~~~ 73 (163)
...+|..++ . .|-. +-+..+|++++|+| +||-||||. ++++.|...| .+.. +|+ +..+-
T Consensus 80 ~vHRYg~Ng-F-kL~~--LP~pr~G~V~GilG-~NGiGKsTa-lkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 80 VVHRYGVNG-F-KLYR--LPTPRPGKVVGILG-PNGIGKSTA-LKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred ceeeccCCc-e-EEec--CCCCCCCcEEEEEc-CCCccHHHH-HHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHH
Confidence 455675432 2 2333 32378999999999 999999999 6788888776 2111 121 11111
Q ss_pred Hhc------cccCCCc-ccc---c-C----------CCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 74 SMA------LAQNQSA-QAF---L-G----------PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 74 ~~~------~~q~~~~-~~~---~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
+++ +.+.|.. ... + + .....+++.+.+++ ....++.+.+|||||-||+|||.+++
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L----~nvl~r~v~~LSGGELQr~aIaa~l~ 229 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGL----ENVLDRDVSELSGGELQRVAIAAALL 229 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcc----hhhhhhhhhhcCchHHHHHHHHHHHh
Confidence 111 1111100 000 0 0 01123457778888 88899999999999999999999995
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++.+++++|||||.||...+..+.+.
T Consensus 230 ----rdADvY~FDEpsSyLDi~qRl~~ar~ 255 (591)
T COG1245 230 ----RDADVYFFDEPSSYLDIRQRLNAARV 255 (591)
T ss_pred ----ccCCEEEEcCCcccccHHHHHHHHHH
Confidence 89999999999999999987765543
No 393
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.73 E-value=2.5e-18 Score=132.38 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=72.9
Q ss_pred cccCeeeEeeCCCC-eEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCC-CcccccCCCCCchhHHH
Q psy17517 21 YLQGVNYNCVAPGK-RFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQ-SAQAFLGPENPEEPYLQ 98 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge-~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~-~~~~~~~~~~~~~~~~~ 98 (163)
.+.++|++ +.+|+ +++|+| ||||||||| +++++... +-.+..+..| ......+. ....+.
T Consensus 16 ~~~~~~~~-i~~~~~~~~ltG-~Ng~GKStl-l~~i~~~~------------~~~~~G~~vp~~~~~~~~~---~~~~~~ 77 (200)
T cd03280 16 KVVPLDIQ-LGENKRVLVITG-PNAGGKTVT-LKTLGLLT------------LMAQSGLPIPAAEGSSLPV---FENIFA 77 (200)
T ss_pred ceEcceEE-ECCCceEEEEEC-CCCCChHHH-HHHHHHHH------------HHHHcCCCccccccccCcC---ccEEEE
Confidence 45589999 99995 799999 999999999 45444111 0001100000 00000000 000111
Q ss_pred hchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHH
Q psy17517 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVA 160 (163)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~ 160 (163)
.++. .+.......++|+||+|++.+++++ .+|+++++|||++++|+.....+.
T Consensus 78 ~lg~----~~~l~~~~s~fs~g~~~~~~i~~~~-----~~p~llllDEp~~glD~~~~~~i~ 130 (200)
T cd03280 78 DIGD----EQSIEQSLSTFSSHMKNIARILQHA-----DPDSLVLLDELGSGTDPVEGAALA 130 (200)
T ss_pred ecCc----hhhhhcCcchHHHHHHHHHHHHHhC-----CCCcEEEEcCCCCCCCHHHHHHHH
Confidence 2222 3445566789999999999999886 689999999999999999887764
No 394
>KOG0065|consensus
Probab=99.71 E-value=2.7e-18 Score=158.21 Aligned_cols=139 Identities=19% Similarity=0.133 Sum_probs=94.9
Q ss_pred CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc------ccccccCHH--HHHHhccccCCCcccc--
Q psy17517 17 PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI------ATIRSLGLE--DLRSMALAQNQSAQAF-- 86 (163)
Q Consensus 17 ~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~------~~i~~~~~~--~~~~~~~~q~~~~~~~-- 86 (163)
+.+++|+||+=- +.||-.+||+| +|||||||| +.++.+-... ..+++.+.. ..+|..++..|.+.-.
T Consensus 802 ~~~qLL~~V~G~-~kPG~LTALMG-~SGAGKTTL-LdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGA-FKPGVLTALMG-ESGAGKTTL-LDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceE-ecCCceeehhc-CCCCchHHH-HHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 456799999998 99999999999 999999999 5555544332 234454443 4555554443322111
Q ss_pred ------------cCC--CC-------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC-CEEEe
Q psy17517 87 ------------LGP--EN-------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA-PFFVL 144 (163)
Q Consensus 87 ------------~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p-~lllL 144 (163)
+++ +. ..+++++.+++....+......+.-||..||+|+.||-=|+ .+| .|++|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv----A~P~~ilFL 954 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV----ANPSSILFL 954 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe----cCCceeEEe
Confidence 111 11 11335666666222223334455679999999999999994 789 99999
Q ss_pred ecccCCCCHHHHHHHHhh
Q psy17517 145 DEIDAALDNTNIGKVASY 162 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~ 162 (163)
||||||||..+...+++.
T Consensus 955 DEPTSGLDsqaA~~i~~~ 972 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVMRF 972 (1391)
T ss_pred cCCCCCccHHHHHHHHHH
Confidence 999999999998877664
No 395
>KOG0062|consensus
Probab=99.70 E-value=1.6e-17 Score=141.29 Aligned_cols=141 Identities=23% Similarity=0.263 Sum_probs=93.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-ccccccCHHHHHHhc--cccCCC--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-ATIRSLGLEDLRSMA--LAQNQS-- 82 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~~i~~~~~~~~~~~~--~~q~~~-- 82 (163)
.++|.|+.+ ..+.+.++++. ++.-...+++| +||+||||+ ++++.+-..| ..+.... -|.++ -+|..-
T Consensus 367 ~V~f~y~p~-~y~~~~~~~~d-~e~~sRi~~vg-~ng~gkst~-lKi~~~~l~~~rgi~~~~---~r~ri~~f~Qhhvd~ 439 (582)
T KOG0062|consen 367 YVAFEYTPS-EYQWRKQLGLD-RESDSRISRVG-ENGDGKSTL-LKILKGDLTPTRGIVGRH---PRLRIKYFAQHHVDF 439 (582)
T ss_pred eeeccCCCc-chhhhhccCCc-cchhhhhheec-cCchhHHHH-HHHHhccCCcccceeeec---ccceecchhHhhhhH
Confidence 466888654 22799999999 99999999999 999999999 5655554433 2221111 11112 122110
Q ss_pred -----------cccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCC
Q psy17517 83 -----------AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAAL 151 (163)
Q Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~L 151 (163)
...|.+ ...+++-+.++......+...+.+..||||||-||++|... .++|.+|+|||||+.|
T Consensus 440 l~~~v~~vd~~~~~~pG--~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~----~~~PhlLVLDEPTNhL 513 (582)
T KOG0062|consen 440 LDKNVNAVDFMEKSFPG--KTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACT----WNNPHLLVLDEPTNHL 513 (582)
T ss_pred HHHHhHHHHHHHHhCCC--CCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHh----cCCCcEEEecCCCccc
Confidence 001112 13344333333322234566677899999999999999988 4889999999999999
Q ss_pred CHHHHHHHHh
Q psy17517 152 DNTNIGKVAS 161 (163)
Q Consensus 152 D~~~~~~i~~ 161 (163)
|..+..-+.+
T Consensus 514 D~dsl~AL~~ 523 (582)
T KOG0062|consen 514 DRDSLGALAK 523 (582)
T ss_pred cHHHHHHHHH
Confidence 9999876654
No 396
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.69 E-value=6.6e-18 Score=127.35 Aligned_cols=135 Identities=20% Similarity=0.213 Sum_probs=91.3
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--------ccccccCHHHHHHh--ccccCCCcccc---
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--------ATIRSLGLEDLRSM--ALAQNQSAQAF--- 86 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--------~~i~~~~~~~~~~~--~~~q~~~~~~~--- 86 (163)
.=|-.+|.+ +..||++-+|| ||||||||| ++-+.|+.+. .++..+...++.++ +..|++...+.
T Consensus 13 tRL~plS~q-v~aGe~~HliG-PNGaGKSTL-LA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 13 TRLGPLSGE-VRAGEILHLVG-PNGAGKSTL-LARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred ccccccccc-cccceEEEEEC-CCCccHHHH-HHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 356788999 99999999999 999999999 5555666544 23444444555433 34444322221
Q ss_pred ---cCCCCCch-------hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH-hcccCCC--CEEEeecccCCCCH
Q psy17517 87 ---LGPENPEE-------PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA-IHSYHPA--PFFVLDEIDAALDN 153 (163)
Q Consensus 87 ---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~-~~~~~~p--~lllLDEPts~LD~ 153 (163)
........ .+...+++ .++..+.+.+|||||=|||-+|-... .++.-|| +++++|||-++||.
T Consensus 90 ~~YL~L~qP~~~~a~~i~~i~~~L~l----~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDv 165 (248)
T COG4138 90 WHYLTLHQPDKTRTELLNDVAGALAL----DDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDV 165 (248)
T ss_pred hhhhhhcCchHHHHHHHHHHHhhhcc----cchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhH
Confidence 11111111 24455566 78999999999999999999987642 2223344 79999999999999
Q ss_pred HHHHHHHh
Q psy17517 154 TNIGKVAS 161 (163)
Q Consensus 154 ~~~~~i~~ 161 (163)
..+..+..
T Consensus 166 AQ~~aLdr 173 (248)
T COG4138 166 AQQSALDR 173 (248)
T ss_pred HHHHHHHH
Confidence 88765544
No 397
>KOG0064|consensus
Probab=99.69 E-value=1e-17 Score=143.13 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=87.5
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCC--------Cccccc-
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQ--------SAQAFL- 87 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~--------~~~~~~- 87 (163)
..++..+||+ |++|--+.|+| |||||||+| .++++|+++. +.+. .+... +--.++|.| +..+|.
T Consensus 495 ~vvv~~Ltf~-i~~G~hLLItG-PNGCGKSSL-fRILggLWPvy~g~L~-~P~~~-~mFYIPQRPYms~gtlRDQIIYPd 569 (728)
T KOG0064|consen 495 DVLVPKLTFQ-IEPGMHLLITG-PNGCGKSSL-FRILGGLWPVYNGLLS-IPRPN-NIFYIPQRPYMSGGTLRDQIIYPD 569 (728)
T ss_pred ceeecceeEE-ecCCceEEEEC-CCCccHHHH-HHHHhccCcccCCeee-cCCCc-ceEeccCCCccCcCcccceeecCC
Confidence 5688999999 99999999999 999999999 7899999986 1111 11100 000155555 112221
Q ss_pred ------C---CCCCchhHHHhchhccc------CCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCC
Q psy17517 88 ------G---PENPEEPYLQGVNYNCV------APGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152 (163)
Q Consensus 88 ------~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD 152 (163)
. .+...+.+++.+.+.-. -+...| --..||||||||+++||.+ +|+|+..+|||-|||.-
T Consensus 570 S~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~d-Wkd~LsgGekQR~~mARm~----yHrPkyalLDEcTsAvs 644 (728)
T KOG0064|consen 570 SSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRD-WKDVLSGGEKQRMGMARMF----YHRPKYALLDECTSAVS 644 (728)
T ss_pred cHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhcc-HHhhccchHHHHHHHHHHH----hcCcchhhhhhhhcccc
Confidence 0 01111224444443100 011111 1256999999999999999 59999999999999998
Q ss_pred HHHHHHHHhh
Q psy17517 153 NTNIGKVASY 162 (163)
Q Consensus 153 ~~~~~~i~~~ 162 (163)
+..+..+.+.
T Consensus 645 idvE~~i~~~ 654 (728)
T KOG0064|consen 645 IDVEGKIFQA 654 (728)
T ss_pred cchHHHHHHH
Confidence 8888777653
No 398
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.9e-16 Score=135.68 Aligned_cols=133 Identities=20% Similarity=0.268 Sum_probs=92.1
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------cccccc-CHHHHHHhccccCCCc---ccc-
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSL-GLEDLRSMALAQNQSA---QAF- 86 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~-~~~~~~~~~~~q~~~~---~~~- 86 (163)
.++|+||+ +.+||++++.| --|||+|-++ ..++|..++ ..+.-. +.+.++..++|..-+. -++
T Consensus 274 ~~~dvSf~-vr~GEIlGiaG-LvGaGRTEl~-~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFT-VRAGEILGIAG-LVGAGRTELA-RALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeE-EeCCcEEEEec-cccCCHHHHH-HHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 57899999 99999999999 9999999994 556776554 122222 2234444454433211 111
Q ss_pred ----------c---C------CCCCc-----hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEE
Q psy17517 87 ----------L---G------PENPE-----EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142 (163)
Q Consensus 87 ----------~---~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ll 142 (163)
. . ..... +.+.+.+++. ....++.+.+||||-||+|.|||.|+ .+|++|
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik---~~s~~~~v~~LSGGNQQKVvlarwL~----~~p~vL 423 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK---TPSPEQPIGTLSGGNQQKVVLARWLA----TDPKVL 423 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcc---cCCccchhhcCCchhhhhHHHHHHHh----cCCCEE
Confidence 0 0 00000 1244444442 34556889999999999999999996 779999
Q ss_pred EeecccCCCCHHHHHHHHhhC
Q psy17517 143 VLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 143 lLDEPts~LD~~~~~~i~~~l 163 (163)
||||||.|+|.-.+.+|.++|
T Consensus 424 ilDEPTRGIDVGAK~eIy~li 444 (500)
T COG1129 424 ILDEPTRGIDVGAKAEIYRLI 444 (500)
T ss_pred EECCCCcCcccchHHHHHHHH
Confidence 999999999999999987753
No 399
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.66 E-value=2.1e-16 Score=117.95 Aligned_cols=47 Identities=47% Similarity=0.754 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 116 NLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 116 ~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+||+||+||+++|++|+..++.+|+++|+|||++++|+.....+.+.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~ 123 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEA 123 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 49999999999999998543348999999999999999998887654
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=6.2e-16 Score=124.60 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 114 MTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 114 ~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
...|||||+||+++|++++.....+|+++|+||||++||+..+..+.+.
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~ 216 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKK 216 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHH
Confidence 3459999999999999875311138999999999999999999988764
No 401
>KOG2355|consensus
Probab=99.65 E-value=3e-16 Score=121.04 Aligned_cols=143 Identities=17% Similarity=0.246 Sum_probs=93.3
Q ss_pred CccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc----cccccCH------------
Q psy17517 6 QSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA----TIRSLGL------------ 69 (163)
Q Consensus 6 ~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~----~i~~~~~------------ 69 (163)
-++..|.|+.. .|++-|+|++ ++.|....+|| .|||||||| ++++.|-.-.. .+.+.+.
T Consensus 16 vsgl~f~y~~~--dP~~~Dfnld-lp~gsRcLlVG-aNGaGKtTl-LKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 16 VSGLQFKYKVS--DPIFFDFNLD-LPAGSRCLLVG-ANGAGKTTL-LKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred EeccEEecccC--CceEEEEeec-cCCCceEEEEe-cCCCchhhh-HHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 35788999874 4999999999 99999999999 999999999 67777665320 0100000
Q ss_pred ----HHHHHhccccC--C-------Cccccc-CCC--CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 70 ----EDLRSMALAQN--Q-------SAQAFL-GPE--NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 70 ----~~~~~~~~~q~--~-------~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
.+|++..++.. | +..+|. +-. .+.+..++.+.+ ....+.+.+|.|||+||.|+..|
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDI------dl~WRmHkvSDGqrRRVQicMGL-- 162 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDI------DLRWRMHKVSDGQRRRVQICMGL-- 162 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheec------cceEEEeeccccchhhhHHHHhc--
Confidence 01221111111 0 001110 000 111122222222 23345788999999999999999
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++-++|+|||.|-.||...+.++.+.+
T Consensus 163 --L~PfkVLLLDEVTVDLDVlARadLLeFl 190 (291)
T KOG2355|consen 163 --LKPFKVLLLDEVTVDLDVLARADLLEFL 190 (291)
T ss_pred --ccceeEEEeeeeEeehHHHHHHHHHHHH
Confidence 5778999999999999999999888753
No 402
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=5e-15 Score=116.03 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=77.9
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhcc-ccCCCcccccCCCCCchhHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMAL-AQNQSAQAFLGPENPEEPYL 97 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~-~q~~~~~~~~~~~~~~~~~~ 97 (163)
..+.+|++++ +..+++++|.| ||||||||+ +++++.+ .+-.+++ +...+...+ + ..+.++
T Consensus 17 ~~v~~~~~~~-~~~~~~~~l~G-~n~~GKstl-l~~i~~~------------~~la~~g~~vpa~~~~~-~---~~~~il 77 (222)
T cd03285 17 AFIPNDVTLT-RGKSRFLIITG-PNMGGKSTY-IRQIGVI------------VLMAQIGCFVPCDSADI-P---IVDCIL 77 (222)
T ss_pred CeEEeeEEEe-ecCCeEEEEEC-CCCCChHHH-HHHHHHH------------HHHHHhCCCcCcccEEE-e---ccceeE
Confidence 4689999999 99999999999 999999999 5555522 2222332 232221111 1 112234
Q ss_pred HhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecc---cCCCCHHHHHH
Q psy17517 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEI---DAALDNTNIGK 158 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP---ts~LD~~~~~~ 158 (163)
..+++ .+. ....+|.|++|+..+++++.. +.+|+++||||| |+++|+.....
T Consensus 78 ~~~~l----~d~---~~~~lS~~~~e~~~~a~il~~--~~~~sLvLLDEp~~gT~~lD~~~~~~ 132 (222)
T cd03285 78 ARVGA----SDS---QLKGVSTFMAEMLETAAILKS--ATENSLIIIDELGRGTSTYDGFGLAW 132 (222)
T ss_pred eeecc----ccc---hhcCcChHHHHHHHHHHHHHh--CCCCeEEEEecCcCCCChHHHHHHHH
Confidence 44444 222 256899999999999999942 378999999999 99999987654
No 403
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.58 E-value=3.8e-15 Score=114.71 Aligned_cols=112 Identities=10% Similarity=0.054 Sum_probs=65.4
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHHHhch
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQGVN 101 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 101 (163)
.-..+++ +.+|++++|+| |||||||||+ +++.+.........+-+.+ +..+.+ ..++ ...+.
T Consensus 19 ~~~~~~~-l~~~~~~~l~G-~Ng~GKStll-~~i~~~~~~~~~g~~~~~~-~~~i~~---~dqi-----------~~~~~ 80 (202)
T cd03243 19 FVPNDIN-LGSGRLLLITG-PNMGGKSTYL-RSIGLAVLLAQIGCFVPAE-SASIPL---VDRI-----------FTRIG 80 (202)
T ss_pred eEeeeEE-EcCCeEEEEEC-CCCCccHHHH-HHHHHHHHHHHcCCCcccc-ccccCC---cCEE-----------EEEec
Confidence 3455677 77899999999 9999999994 5444322110000000000 000111 0111 11222
Q ss_pred hcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHH
Q psy17517 102 YNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVA 160 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~ 160 (163)
. .+......+.++.+++|...++..+ .+|+++++|||++++|+.....+.
T Consensus 81 ~----~d~i~~~~s~~~~e~~~l~~i~~~~-----~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 81 A----EDSISDGRSTFMAELLELKEILSLA-----TPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred C----cccccCCceeHHHHHHHHHHHHHhc-----cCCeEEEEecCCCCCCHHHHHHHH
Confidence 2 2333445567888888755554433 789999999999999998776553
No 404
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.57 E-value=5.4e-15 Score=114.54 Aligned_cols=114 Identities=8% Similarity=-0.001 Sum_probs=74.6
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHH
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYL 97 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 97 (163)
+..+.+|++++ +..|++++|+| ||||||||+ +++++++. +..++++--|.....+ ...+.+.
T Consensus 15 ~~~v~~~~~~~-~~~~~~~~l~G-~n~~GKstl-l~~i~~~~------------~la~~G~~vpa~~~~l---~~~d~I~ 76 (204)
T cd03282 15 KNFIPNDIYLT-RGSSRFHIITG-PNMSGKSTY-LKQIALLA------------IMAQIGCFVPAEYATL---PIFNRLL 76 (204)
T ss_pred CcEEEeeeEEe-eCCCcEEEEEC-CCCCCHHHH-HHHHHHHH------------HHHHcCCCcchhhcCc---cChhhee
Confidence 45799999999 99999999999 999999999 56665553 2222321112110000 0111222
Q ss_pred HhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
..++. .+...+..+++|+|++|+..+ .++ .++|+++++|||++++|+.....
T Consensus 77 ~~~~~----~d~~~~~~S~fs~e~~~~~~i-l~~----~~~~~lvllDE~~~gt~~~~~~~ 128 (204)
T cd03282 77 SRLSN----DDSMERNLSTFASEMSETAYI-LDY----ADGDSLVLIDELGRGTSSADGFA 128 (204)
T ss_pred EecCC----ccccchhhhHHHHHHHHHHHH-HHh----cCCCcEEEeccccCCCCHHHHHH
Confidence 33333 344556678999999986444 334 37899999999999999976443
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.57 E-value=3.5e-15 Score=124.92 Aligned_cols=133 Identities=21% Similarity=0.240 Sum_probs=87.2
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc-cccCCCc-----
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-LAQNQSA----- 83 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-~~q~~~~----- 83 (163)
..+++||||+ |++|++++++| +|||||||+ ++|+.|.... . ..-+.+...+...+ ...+|..
T Consensus 396 ryvlr~vNL~-ikpGdvvaVvG-qSGaGKttl-lRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~ti 472 (593)
T COG2401 396 RYVLRNLNLE-IKPGDVVAVVG-QSGAGKTTL-LRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTI 472 (593)
T ss_pred eeeeeceeeE-ecCCCeEEEEe-cCCCCcchH-HHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhH
Confidence 4699999999 99999999999 999999999 6777665432 1 01111111111111 1111100
Q ss_pred --cccc--CCCCCchhHHHhchhcccCCC-ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 84 --QAFL--GPENPEEPYLQGVNYNCVAPG-KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 84 --~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
+++. +--+...+++..+|+. +. ..-++.++||.|||.|.-||++++ ..|.+++.||..|.||+.+..+
T Consensus 473 lehl~s~tGD~~~AveILnraGls---DAvlyRr~f~ELStGQKeR~KLAklla----erpn~~~iDEF~AhLD~~TA~r 545 (593)
T COG2401 473 LEHLRSKTGDLNAAVEILNRAGLS---DAVLYRRKFSELSTGQKERAKLAKLLA----ERPNVLLIDEFAAHLDELTAVR 545 (593)
T ss_pred HHHHhhccCchhHHHHHHHhhccc---hhhhhhccHhhcCcchHHHHHHHHHHh----cCCCcEEhhhhhhhcCHHHHHH
Confidence 0010 0001123455555551 22 334578899999999999999997 7899999999999999999888
Q ss_pred HHh
Q psy17517 159 VAS 161 (163)
Q Consensus 159 i~~ 161 (163)
+.+
T Consensus 546 VAr 548 (593)
T COG2401 546 VAR 548 (593)
T ss_pred HHH
Confidence 764
No 406
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.56 E-value=6.7e-15 Score=114.24 Aligned_cols=49 Identities=53% Similarity=0.906 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 115 TNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 115 ~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..||||||.+++||-.||++++.+.+++|||||+++||..++.++.++|
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l 183 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLL 183 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4999999999999999999999999999999999999999999988653
No 407
>KOG0063|consensus
Probab=99.55 E-value=3.3e-15 Score=125.35 Aligned_cols=137 Identities=19% Similarity=0.170 Sum_probs=90.6
Q ss_pred ceeeCCCCCCCCcccCeeeEeeCCCCe-----EEeecCCCCChHHHHHHHHHhcccccc---cccccCHHHHHHhccc--
Q psy17517 9 QAFLGPENPEEPYLQGVNYNCVAPGKR-----FQPMTNLSGGEKTVAALALLFAIHRIA---TIRSLGLEDLRSMALA-- 78 (163)
Q Consensus 9 ~~f~y~~~~~~~~l~~vsl~~i~~Ge~-----~~lvG~~nGsGKSTl~l~l~~~l~~~~---~i~~~~~~~~~~~~~~-- 78 (163)
-.|.||+ .+.-+.++.|. |..|++ +..+| .||.||||| ++++.+...|. ++..++..-+..++-.
T Consensus 341 ~~y~Yp~--m~k~~g~F~L~-i~~GefsdSeiivmlg-EngtgkTTf-i~mlag~~~pd~~~e~p~lnVSykpqkispK~ 415 (592)
T KOG0063|consen 341 GRYSYPK--MKKTVGDFCLC-IKVGEFSDSEIIVMLG-ENGTGKTTF-IRMLAGRLKPDEGGEIPVLNVSYKPQKISPKR 415 (592)
T ss_pred heeccCc--ceeeeeeEEEE-EeecccCCceeEEEEc-cCCcchhHH-HHHHhcCCCCCccCcccccceeccccccCccc
Confidence 3588987 46789999998 999875 78888 999999999 67777766552 2222221111111110
Q ss_pred cCCCcccccCC--C-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCC
Q psy17517 79 QNQSAQAFLGP--E-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAAL 151 (163)
Q Consensus 79 q~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~L 151 (163)
+....+++... . ...-+.++-+.+ +...++.+..|||||.||||+|..|- ...++++.|||.+.|
T Consensus 416 ~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i----e~i~dqevq~lSggelQRval~KOGG----KpAdvYliDEpsAyl 487 (592)
T KOG0063|consen 416 EGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI----ENIIDQEVQGLSGGELQRVALALCLG----KPADVYLIDEPSAYL 487 (592)
T ss_pred cchHHHHHHHHhHhhhcCHHHHHhhhhhhhH----HHHHhHHhhcCCchhhHHHHHHHhcC----CCCceEEecCchhhc
Confidence 00000111000 0 001123444455 67788899999999999999999985 677999999999999
Q ss_pred CHHHHHH
Q psy17517 152 DNTNIGK 158 (163)
Q Consensus 152 D~~~~~~ 158 (163)
|.+.+..
T Consensus 488 DSeQRi~ 494 (592)
T KOG0063|consen 488 DSEQRII 494 (592)
T ss_pred ChHHHHH
Confidence 9998764
No 408
>KOG0066|consensus
Probab=99.52 E-value=4.1e-15 Score=125.45 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=84.3
Q ss_pred eeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc--cc--------ccc--cccC-H-----HH
Q psy17517 10 AFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH--RI--------ATI--RSLG-L-----ED 71 (163)
Q Consensus 10 ~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~--~~--------~~i--~~~~-~-----~~ 71 (163)
.|.-... +...+.+.|+. |-.|..+++|| |||-|||||++.+..+-. +| ..+ .+.+ . .+
T Consensus 269 nF~ISA~-Gk~LFvnA~L~-Iv~GRRYGLVG-PNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD 345 (807)
T KOG0066|consen 269 NFDISAQ-GKLLFVNASLT-IVYGRRYGLVG-PNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKAD 345 (807)
T ss_pred eeeeecc-cceeeeccceE-EEecceecccC-CCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhh
Confidence 4444333 45688999999 99999999999 999999999654433222 11 111 0000 0 00
Q ss_pred H-HHhc-------cccCC--Ccc-------cc--------cCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHH
Q psy17517 72 L-RSMA-------LAQNQ--SAQ-------AF--------LGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAA 126 (163)
Q Consensus 72 ~-~~~~-------~~q~~--~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrva 126 (163)
. |-.+ ..|.. +.. .| ...+.+...++..+|+. .+..+++...+|||.|-||+
T Consensus 346 ~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFs---kEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 346 KKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFS---KEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCC---hhHhcCCccccCCceeeehh
Confidence 0 1000 00000 000 00 01122333466677762 23445667789999999999
Q ss_pred HHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 127 LALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 127 iAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
+||||. .+|.+|+|||||++||....
T Consensus 423 LARALf----lEPTLLMLDEPTNHLDLNAV 448 (807)
T KOG0066|consen 423 LARALF----LEPTLLMLDEPTNHLDLNAV 448 (807)
T ss_pred HHHHHh----cCceeeeecCCcccccccee
Confidence 999995 67999999999999997654
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=4.7e-14 Score=113.31 Aligned_cols=50 Identities=28% Similarity=0.235 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhc-----ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 114 MTNLSGGEKTVAALALLFAIH-----SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 114 ~~~LSgGqkQrvaiAraL~~~-----~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
...+|+||+|++++|++|+.. -..+|+++++||||++||+..+..+.+.+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l 235 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAI 235 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHh
Confidence 456899999999999998521 13689999999999999999999887753
No 410
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.47 E-value=2.1e-13 Score=105.24 Aligned_cols=112 Identities=11% Similarity=-0.017 Sum_probs=61.9
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHH
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYL 97 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 97 (163)
+..+.+|++++ . |++++|+| ||||||||| ++++.+..... ..+.+.. ...+++| .+ .+|......+ .+.
T Consensus 13 ~~~v~n~i~l~-~--g~~~~ltG-pNg~GKSTl-lr~i~~~~~l~-~~G~~v~--a~~~~~q-~~-~l~~~~~~~d-~l~ 81 (199)
T cd03283 13 EKRVANDIDME-K--KNGILITG-SNMSGKSTF-LRTIGVNVILA-QAGAPVC--ASSFELP-PV-KIFTSIRVSD-DLR 81 (199)
T ss_pred CCeecceEEEc-C--CcEEEEEC-CCCCChHHH-HHHHHHHHHHH-HcCCEEe--cCccCcc-cc-eEEEeccchh-ccc
Confidence 34677887776 4 79999999 999999999 55555443210 0011000 0124555 32 2332221111 110
Q ss_pred HhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC--CCCEEEeecccCCCCHHHHHHH
Q psy17517 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH--PAPFFVLDEIDAALDNTNIGKV 159 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~--~p~lllLDEPts~LD~~~~~~i 159 (163)
. +. .....+.+|+ ..+|.. +. +|+++++|||++++|+.....+
T Consensus 82 ~--~~-------------s~~~~e~~~~--~~iL~~--~~~~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 82 D--GI-------------SYFYAELRRL--KEIVEK--AKKGEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred c--cc-------------ChHHHHHHHH--HHHHHh--ccCCCCeEEEEecccCCCCHHHHHHH
Confidence 0 11 1112333443 333332 34 8999999999999999987654
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.38 E-value=2e-12 Score=115.24 Aligned_cols=54 Identities=31% Similarity=0.377 Sum_probs=46.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
...++..+|||||.|||-+|.-|... .+...++||||||.||-..-.+++++.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~-~tg~TlYiLDEPTTGLH~~Di~kLl~VL 868 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKR-STGKTLYILDEPTTGLHFDDIKKLLEVL 868 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhc-cCCCeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 45788899999999999999999643 3455899999999999999998887653
No 412
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.37 E-value=3.6e-13 Score=102.54 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHH
Q psy17517 107 PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159 (163)
Q Consensus 107 ~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i 159 (163)
.+..++..+++|+|++|...+.+. ..+|+++++|||++++|+.....+
T Consensus 52 ~d~~~~~~s~fs~~~~~l~~~l~~-----~~~~~llllDEp~~g~d~~~~~~~ 99 (185)
T smart00534 52 SDSLAQGLSTFMVEMKETANILKN-----ATENSLVLLDELGRGTSTYDGVAI 99 (185)
T ss_pred CCchhccccHHHHHHHHHHHHHHh-----CCCCeEEEEecCCCCCCHHHHHHH
Confidence 455666778999998874444443 268999999999999999976554
No 413
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.36 E-value=3.9e-12 Score=108.24 Aligned_cols=135 Identities=13% Similarity=0.163 Sum_probs=94.4
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccc-cccCHHHHHHh-ccccCC-----
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATI-RSLGLEDLRSM-ALAQNQ----- 81 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i-~~~~~~~~~~~-~~~q~~----- 81 (163)
+...+++|||+ +..||+++|.| -.|-|-+.| .-.+.|+..+ .++ ...+..+++.. +.+.+.
T Consensus 270 ~~~~v~~vs~~-Vr~GEIvGIAG-V~GNGQ~eL-~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~ 346 (501)
T COG3845 270 GVTAVKDVSFE-VRAGEIVGIAG-VAGNGQSEL-VEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346 (501)
T ss_pred CCceeeeeeeE-EecCcEEEEEe-cCCCCHHHH-HHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccC
Confidence 35789999999 99999999999 999999999 6678888765 233 33355554433 222222
Q ss_pred ---------CcccccCCCC----------------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 82 ---------SAQAFLGPEN----------------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 82 ---------~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+|.+...... ...++++.+++. ..-...+..+||||.+||+-+||=|.
T Consensus 347 Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr---~~~~~~~a~~LSGGNqQK~IlaREl~---- 419 (501)
T COG3845 347 GLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR---APSPDAPARSLSGGNQQKLILARELA---- 419 (501)
T ss_pred ccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc---CCCCCcchhhcCCcceehhhhhhhhc----
Confidence 1111100000 001244555542 23445568899999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++|+..+||.|||....+.+++.
T Consensus 420 ~~p~lLI~~qPTrGLDvgA~~~I~~~ 445 (501)
T COG3845 420 RRPDLLIAAQPTRGLDVGAIEFIHER 445 (501)
T ss_pred cCCCEEEEcCCCccccHHHHHHHHHH
Confidence 88999999999999999999888764
No 414
>KOG0065|consensus
Probab=99.36 E-value=5.4e-13 Score=123.70 Aligned_cols=139 Identities=19% Similarity=0.261 Sum_probs=92.3
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc----c--cccccCHHHHHH-h-ccccCCCccccc--
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI----A--TIRSLGLEDLRS-M-ALAQNQSAQAFL-- 87 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~----~--~i~~~~~~~~~~-~-~~~q~~~~~~~~-- 87 (163)
...+++|++.- +++|+.+.++| |.|||||||++.+.+.+... . ...+.+..+... + +++-.+.+.-+.
T Consensus 127 ~~~il~~~sg~-~~pg~m~lvLG-~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGI-IKPGEMTLVLG-PPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCccee-EcCCceEEEec-CCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee
Confidence 35799999997 99999999999 99999999965555544432 1 122333333332 2 233333222220
Q ss_pred -------------CC----C--CCc-------hhHHHhchhcccCCC-ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy17517 88 -------------GP----E--NPE-------EPYLQGVNYNCVAPG-KRFQPMTNLSGGEKTVAALALLFAIHSYHPAP 140 (163)
Q Consensus 88 -------------~~----~--~~~-------~~~~~~~~~~~~~~~-~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ 140 (163)
.+ + .+. +.+++.+|+..-.+. .-+...+-.|||||+||.+|-+++ .+++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v----~~~~ 280 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV----GPAS 280 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee----cCcc
Confidence 00 0 111 135666676322122 224567889999999999999995 7899
Q ss_pred EEEeecccCCCCHHHHHHHHhh
Q psy17517 141 FFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 141 lllLDEPts~LD~~~~~~i~~~ 162 (163)
++++||+|.|||..+.-++.+.
T Consensus 281 ~~~~De~t~GLDSsTal~iik~ 302 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKA 302 (1391)
T ss_pred eeeeecccccccHHHHHHHHHH
Confidence 9999999999999998887664
No 415
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.34 E-value=1.6e-12 Score=117.62 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=71.8
Q ss_pred CCcccC-----eeeEeeCCC-CeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhcc-ccCCCcccccCCCC
Q psy17517 19 EPYLQG-----VNYNCVAPG-KRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMAL-AQNQSAQAFLGPEN 91 (163)
Q Consensus 19 ~~~l~~-----vsl~~i~~G-e~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~-~q~~~~~~~~~~~~ 91 (163)
+|++++ ++++ +..+ ++++|+| |||+||||+ +++++++... .+.+ +........++.
T Consensus 303 hPll~~~~~vp~di~-l~~~~~~liItG-pNg~GKSTl-LK~i~~~~l~------------aq~G~~Vpa~~~~~~~~-- 365 (771)
T TIGR01069 303 HPLLKEPKVVPFTLN-LKFEKRVLAITG-PNTGGKTVT-LKTLGLLALM------------FQSGIPIPANEHSEIPY-- 365 (771)
T ss_pred CceecCCceEeceeE-eCCCceEEEEEC-CCCCCchHH-HHHHHHHHHH------------HHhCCCccCCccccccc--
Confidence 456654 7888 8877 8999999 999999999 5666554210 0111 111100000000
Q ss_pred CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHH
Q psy17517 92 PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159 (163)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i 159 (163)
.......++. ........+++|+++++++.|++.+ .+|+++|+|||++++|+.....+
T Consensus 366 -~d~i~~~i~~----~~si~~~LStfS~~m~~~~~il~~~-----~~~sLvLlDE~g~GtD~~eg~al 423 (771)
T TIGR01069 366 -FEEIFADIGD----EQSIEQNLSTFSGHMKNISAILSKT-----TENSLVLFDELGAGTDPDEGSAL 423 (771)
T ss_pred -hhheeeecCh----HhHHhhhhhHHHHHHHHHHHHHHhc-----CCCcEEEecCCCCCCCHHHHHHH
Confidence 0000111111 2233345678999999999988876 68999999999999999988766
No 416
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.28 E-value=4.3e-12 Score=116.65 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=45.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.++++.+|||||+|||+||++|+.+ -.|+++||||||++||+....++.++|
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~--~~~~llILDEPtagLd~~~~~~L~~~L 534 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSG--LTGVLYVLDEPSIGLHQRDNDRLIETL 534 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhC--CCCcEEEecCCccCCCHHHHHHHHHHH
Confidence 6889999999999999999999732 114999999999999999999988753
No 417
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.28 E-value=1.6e-11 Score=94.98 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=38.5
Q ss_pred CCCCHH--HHHHHHHHHHHHhcccCCCCEEEeeccc-----CCCCHHHHHHHHhhC
Q psy17517 115 TNLSGG--EKTVAALALLFAIHSYHPAPFFVLDEID-----AALDNTNIGKVASYI 163 (163)
Q Consensus 115 ~~LSgG--qkQrvaiAraL~~~~~~~p~lllLDEPt-----s~LD~~~~~~i~~~l 163 (163)
+..+|+ |++++.|||+++ ++|+++++|||| ++||+..++.+.+.+
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~----~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~ 200 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLT----NDPNLVFVGAPALAPEEIQIDPELVAQAEKEL 200 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHh----hcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence 334444 999999999995 789999999999 999999999988753
No 418
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=5.7e-12 Score=115.65 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=45.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.++.+.+|||||+|||+||++|+.+ -.|+++||||||++||+....++.++|
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~--~~~~llILDEPtagLD~~~~~~L~~~L 532 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSG--LTGVLYVLDEPSIGLHQRDNERLINTL 532 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhC--CCCcEEEEcCCccCCCHHHHHHHHHHH
Confidence 5889999999999999999999732 124899999999999999999988753
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.26 E-value=9.1e-12 Score=97.21 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=61.4
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccccccc-ccCHHHHHHhccccCCCcccccCCCCCchhHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIR-SLGLEDLRSMALAQNQSAQAFLGPENPEEPYL 97 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~-~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 97 (163)
..+.+|++++ +.+ ++++|+| ||||||||+ ++.++++.-..... ..+.. +..+.+. .++|
T Consensus 18 ~~v~n~~~l~-~~~-~~~~l~G-pn~sGKstl-lr~i~~~~~l~~~g~~vp~~--~~~i~~~---~~i~----------- 77 (216)
T cd03284 18 PFVPNDTELD-PER-QILLITG-PNMAGKSTY-LRQVALIALLAQIGSFVPAS--KAEIGVV---DRIF----------- 77 (216)
T ss_pred ceEeeeEEec-CCc-eEEEEEC-CCCCChHHH-HHHHHHHHHHhccCCeeccc--cceecce---eeEe-----------
Confidence 3588999998 877 9999999 999999999 55555433211100 00000 0001000 0111
Q ss_pred HhchhcccCCCccCCCCCCCCHHHHHH----HHHHHHHHhcccCCCCEEEeecc---cCCCCHHH
Q psy17517 98 QGVNYNCVAPGKRFQPMTNLSGGEKTV----AALALLFAIHSYHPAPFFVLDEI---DAALDNTN 155 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~LSgGqkQr----vaiAraL~~~~~~~p~lllLDEP---ts~LD~~~ 155 (163)
..++. ..++|.|+.++ ..+++++.. ..+|++++|||| |+++|...
T Consensus 78 ~~~~~-----------~~~ls~g~s~f~~e~~~l~~~l~~--~~~~~llllDEp~~gt~~lD~~~ 129 (216)
T cd03284 78 TRIGA-----------SDDLAGGRSTFMVEMVETANILNN--ATERSLVLLDEIGRGTSTYDGLS 129 (216)
T ss_pred ccCCc-----------hhhhccCcchHHHHHHHHHHHHHh--CCCCeEEEEecCCCCCChHHHHH
Confidence 01111 23455555544 457777653 378999999999 99999865
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=3.3e-11 Score=93.84 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 119 GGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 119 gGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
.-+-||++++++++ .+|+++++|||++++|+...
T Consensus 93 ~~el~~l~~~l~~~----~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 93 MIDLYQVSKALRLA----TRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred HHHHHHHHHHHHhC----CCCcEEEeccccCCCCHHHH
Confidence 35779999999885 78999999999999998753
No 421
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.17 E-value=3.8e-11 Score=115.47 Aligned_cols=50 Identities=28% Similarity=0.359 Sum_probs=45.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCC--CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPA--PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p--~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.++.+.+|||||+|||+|||+|+ .+| +++||||||++||+..+.++.++|
T Consensus 470 ldR~~~tLSGGE~QRV~LAraL~----~~p~g~lLILDEPTagLD~~~~~~L~~lL 521 (1809)
T PRK00635 470 PERALATLSGGEQERTALAKHLG----AELIGITYILDEPSIGLHPQDTHKLINVI 521 (1809)
T ss_pred CCCchhhCCHHHHHHHHHHHHHh----cCCCCcEEEEECCccCCCHHHHHHHHHHH
Confidence 57889999999999999999996 678 899999999999999999987753
No 422
>KOG0063|consensus
Probab=99.15 E-value=2.4e-11 Score=102.34 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=77.0
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-cccccCHHHHHHh-----c--cccCC---------Ccccc---c
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-TIRSLGLEDLRSM-----A--LAQNQ---------SAQAF---L 87 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-~i~~~~~~~~~~~-----~--~~q~~---------~~~~~---~ 87 (163)
-.+|+..++|| -||-||||. ++++.+-.+| . .....+..++-.. + .|+.+ ..|.. .
T Consensus 97 prpg~vlglvg-tngigkstA-lkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 97 PRPGQVLGLVG-TNGIGKSTA-LKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CCcchhccccc-cCcccHHHH-HHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 46899999999 999999999 6666666655 1 1111111111100 0 11111 00000 0
Q ss_pred ------------C--CCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCH
Q psy17517 88 ------------G--PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153 (163)
Q Consensus 88 ------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~ 153 (163)
. .+...+.+.+.+.+ ....++.+..|||||-||.+||.+-+ ++.++.++|||.|.||.
T Consensus 175 r~~k~~v~~~l~~~~~r~~~~~~~~~~~L----~~~~~re~~~lsggelqrfaia~~~v----q~advyMFDEpSsYLDV 246 (592)
T KOG0063|consen 175 RAVKGTVGSLLDRKDERDNKEEVCDQLDL----NNLLDREVEQLSGGELQRFAIAMVCV----QKADVYMFDEPSSYLDV 246 (592)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHH----hhHHHhhhhhcccchhhhhhhhhhhh----hhcceeEecCCcccchH
Confidence 0 01112234455555 56777889999999999999999984 78999999999999999
Q ss_pred HHHHHH
Q psy17517 154 TNIGKV 159 (163)
Q Consensus 154 ~~~~~i 159 (163)
+.+.+-
T Consensus 247 KQRLka 252 (592)
T KOG0063|consen 247 KQRLKA 252 (592)
T ss_pred HHhhhH
Confidence 887653
No 423
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.09 E-value=6.6e-11 Score=107.43 Aligned_cols=110 Identities=12% Similarity=0.036 Sum_probs=67.4
Q ss_pred CeeeEeeCC-CCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhcc-ccCCCcccccCCCCCchhHHHhch
Q psy17517 24 GVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMAL-AQNQSAQAFLGPENPEEPYLQGVN 101 (163)
Q Consensus 24 ~vsl~~i~~-Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~-~q~~~~~~~~~~~~~~~~~~~~~~ 101 (163)
..++. +.. +.++.|.| ||++||||++ +.++.+.- -.+++ |.+.....-.+. .+.++..++
T Consensus 318 pndi~-l~~~~~~~iITG-pN~gGKTt~l-ktigl~~~------------maq~G~~vpa~~~~~i~~---~~~i~~~ig 379 (782)
T PRK00409 318 PKDIS-LGFDKTVLVITG-PNTGGKTVTL-KTLGLAAL------------MAKSGLPIPANEPSEIPV---FKEIFADIG 379 (782)
T ss_pred CceeE-ECCCceEEEEEC-CCCCCcHHHH-HHHHHHHH------------HHHhCCCcccCCCccccc---cceEEEecC
Confidence 45666 654 45677888 9999999994 44433321 11111 111110000000 000111223
Q ss_pred hcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHH
Q psy17517 102 YNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVA 160 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~ 160 (163)
. .....+..+++|++|+|++.|++++ .+|+++|+|||++|+|+.....+.
T Consensus 380 ~----~~si~~~lStfS~~m~~~~~Il~~~-----~~~sLvLlDE~~~GtDp~eg~ala 429 (782)
T PRK00409 380 D----EQSIEQSLSTFSGHMTNIVRILEKA-----DKNSLVLFDELGAGTDPDEGAALA 429 (782)
T ss_pred C----ccchhhchhHHHHHHHHHHHHHHhC-----CcCcEEEecCCCCCCCHHHHHHHH
Confidence 2 3445566789999999999999998 689999999999999998776653
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.03 E-value=1.3e-10 Score=81.30 Aligned_cols=35 Identities=31% Similarity=0.161 Sum_probs=31.1
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++|++++|+ +++||+++|+| |||||||||+..+.
T Consensus 2 ~~aL~~vsl~-i~~ge~v~I~G-pSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVD-VYGKVGVLITG-DSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEE-EcCCEEEEEEc-CCCCCHHHHHHHhh
Confidence 5799999999 99999999999 99999999954433
No 425
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.01 E-value=1.1e-09 Score=86.20 Aligned_cols=116 Identities=11% Similarity=0.151 Sum_probs=63.5
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhcccccc-c---c-cccCHHHHHHhccccCCCcccccCCCCCchhHHHhchhcc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-T---I-RSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQGVNYNC 104 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-~---i-~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (163)
+++|+++.++| +||||||||+..++.++.... . + .+.+..++.+.+.. ++.+ .++.... +.
T Consensus 21 i~~g~~~~i~G-~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~--------~g~~--~~~~~~~-~~-- 86 (230)
T PRK08533 21 IPAGSLILIEG-DESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMS--------LGYD--INKKLIS-GK-- 86 (230)
T ss_pred CCCCcEEEEEC-CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH--------hCCc--hHHHhhc-Cc--
Confidence 89999999999 999999999766666554321 0 1 11122222222100 0000 0000000 00
Q ss_pred cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCC----CHHHHHHHHhh
Q psy17517 105 VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAAL----DNTNIGKVASY 162 (163)
Q Consensus 105 ~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~L----D~~~~~~i~~~ 162 (163)
-...+.. ..+|+++.++-.+.+.+...+..+|+++++||||+.+ |+...+.+.+.
T Consensus 87 --l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~ 145 (230)
T PRK08533 87 --LLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAF 145 (230)
T ss_pred --EEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHH
Confidence 0001111 2366776666666666654334579999999999999 77666655543
No 426
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.99 E-value=4.3e-10 Score=104.69 Aligned_cols=65 Identities=49% Similarity=0.812 Sum_probs=53.5
Q ss_pred HhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.++.+...+.+..+.++..|||||+||++||+++++..+.+|+++||||||++||+.+...+.++
T Consensus 1071 ~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~ 1135 (1179)
T TIGR02168 1071 AGIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANL 1135 (1179)
T ss_pred cCceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHH
Confidence 34444444556677899999999999999999997554577899999999999999999988765
No 427
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.96 E-value=5.9e-10 Score=104.08 Aligned_cols=65 Identities=42% Similarity=0.806 Sum_probs=54.6
Q ss_pred hchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+.+...+.+....++..||||||++++||++|+.+.+.+|+++|||||+++||+.++..+.++|
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l 1121 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLI 1121 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHH
Confidence 34443444566677889999999999999999998777889999999999999999999888753
No 428
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.95 E-value=3.8e-09 Score=80.70 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=76.8
Q ss_pred eCCCCCCCCcccCee--eEeeCCCCeEEeecCCCCChHHHHH--HHHHhcccccc---------cccccCHHHHHHhccc
Q psy17517 12 LGPENPEEPYLQGVN--YNCVAPGKRFQPMTNLSGGEKTVAA--LALLFAIHRIA---------TIRSLGLEDLRSMALA 78 (163)
Q Consensus 12 ~y~~~~~~~~l~~vs--l~~i~~Ge~~~lvG~~nGsGKSTl~--l~l~~~l~~~~---------~i~~~~~~~~~~~~~~ 78 (163)
.||. +.++++++- |+ +.+ -++.++| .||+|||||+ +....++...+ +.....+.+..+..--
T Consensus 18 eYp~--slPa~r~l~~~Le-F~a-pIT~i~G-ENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~ 92 (233)
T COG3910 18 EYPF--SLPAFRHLEERLE-FRA-PITFITG-ENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKR 92 (233)
T ss_pred hCcc--cchHHHhhhhhcc-ccC-ceEEEEc-CCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhc
Confidence 3554 366776654 55 444 6888999 9999999996 33344444331 1111222222222212
Q ss_pred cCCCcccccCCCCC--chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 79 QNQSAQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 79 q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
.++..-.|+.-+.. ....++.+.-. .......-...|.||-=.--+.+.+ +.--++|||||-|+|-|..+
T Consensus 93 ~k~~~g~FlRAEs~yn~as~~De~~~e---~~~~~~sLh~~SHGEsf~~i~~~rf-----~~~GiYiLDEPEa~LSp~RQ 164 (233)
T COG3910 93 KKPPIGFFLRAESFYNVASYLDEADGE---ANYGGRSLHHMSHGESFLAIFHNRF-----NGQGIYILDEPEAALSPSRQ 164 (233)
T ss_pred CCCCcceEEehhHHHHHHHHHHhhhhh---cccCCcchhhhccchHHHHHHHHHh-----ccCceEEecCccccCCHHHH
Confidence 22222233221110 00122222110 1122334567899998666666666 78899999999999999998
Q ss_pred HHHHhh
Q psy17517 157 GKVASY 162 (163)
Q Consensus 157 ~~i~~~ 162 (163)
..+...
T Consensus 165 lella~ 170 (233)
T COG3910 165 LELLAI 170 (233)
T ss_pred HHHHHH
Confidence 887654
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.95 E-value=9.3e-10 Score=96.83 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 115 TNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 115 ~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..|||||+||++||++++..+..+|+++||||||++||+.....+.+.|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l 487 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKL 487 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4789999999999999986433357999999999999999999887653
No 430
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.94 E-value=3.1e-09 Score=83.39 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=32.1
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
..+.+|++++ +.+|++++|.| |||+||||+ ++.+++.
T Consensus 18 ~~v~n~i~~~-~~~g~~~~itG-~N~~GKStl-l~~i~~~ 54 (222)
T cd03287 18 SFVPNDIHLS-AEGGYCQIITG-PNMGGKSSY-IRQVALI 54 (222)
T ss_pred CEEEEeEEEE-ecCCcEEEEEC-CCCCCHHHH-HHHHHHH
Confidence 4688999999 99999999999 999999999 5555553
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=98.93 E-value=1.3e-09 Score=95.72 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 115 TNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 115 ~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..+||||+||++||++++..+..+|+++|||||+++||......+.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~ 476 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKL 476 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 358999999999999998655567999999999999999999888765
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.90 E-value=1.4e-09 Score=95.10 Aligned_cols=52 Identities=33% Similarity=0.396 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhc------ccCCCCEEEeeccc-CCCCHHHHHHHHhhC
Q psy17517 112 QPMTNLSGGEKTVAALALLFAIH------SYHPAPFFVLDEID-AALDNTNIGKVASYI 163 (163)
Q Consensus 112 ~~~~~LSgGqkQrvaiAraL~~~------~~~~p~lllLDEPt-s~LD~~~~~~i~~~l 163 (163)
..+..|||||+||++||++|+.. +-.+|+++|||||| ++||+.+...+.+.|
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l 522 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSIL 522 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHH
Confidence 46689999999999999998621 01479999999998 789999999887653
No 433
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.89 E-value=3.9e-09 Score=84.17 Aligned_cols=127 Identities=13% Similarity=-0.009 Sum_probs=71.1
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--------ccccc--cCHHHHHHhc---cccCC-Ccccc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--------ATIRS--LGLEDLRSMA---LAQNQ-SAQAF 86 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--------~~i~~--~~~~~~~~~~---~~q~~-~~~~~ 86 (163)
+++.+ +. +..||.++|+| |+|+|||||+..+...+... .-+.+ .+..++.+.+ ++..+ +....
T Consensus 6 ~id~~-~~-i~~Gqr~~I~G-~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~ 82 (249)
T cd01128 6 VVDLF-AP-IGKGQRGLIVA-PPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE 82 (249)
T ss_pred heeee-cc-cCCCCEEEEEC-CCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH
Confidence 44443 35 89999999999 99999999965555444321 01222 4455554444 11111 10000
Q ss_pred cCCCC--CchhHHH---hchh------------cccCCCccCCCCCCCCHHH--------HHHHHHHHHHHhcccCCCCE
Q psy17517 87 LGPEN--PEEPYLQ---GVNY------------NCVAPGKRFQPMTNLSGGE--------KTVAALALLFAIHSYHPAPF 141 (163)
Q Consensus 87 ~~~~~--~~~~~~~---~~~~------------~~~~~~~~~~~~~~LSgGq--------kQrvaiAraL~~~~~~~p~l 141 (163)
..... ......+ .-|. .....+.....+..+|||+ +||+++||++ .+++++
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~----~~~gsI 158 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNI----EEGGSL 158 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCC----CCCCce
Confidence 00000 0000000 0010 0011233344567789999 9999999997 478999
Q ss_pred EEeecccCCCCHHHH
Q psy17517 142 FVLDEIDAALDNTNI 156 (163)
Q Consensus 142 llLDEPts~LD~~~~ 156 (163)
.+| ||+.+|..+.
T Consensus 159 t~l--~T~~~d~~~~ 171 (249)
T cd01128 159 TII--ATALVDTGSR 171 (249)
T ss_pred EEe--eeheecCCCc
Confidence 999 9999995443
No 434
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.84 E-value=1.1e-08 Score=80.04 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=32.6
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
+..+-+|++|+ +.+|++++|.| |||+||||+ ++.++...
T Consensus 16 ~~~v~ndi~l~-~~~~~~~~itG-~n~~gKs~~-l~~i~~~~ 54 (218)
T cd03286 16 SSFVPNDVDLG-ATSPRILVLTG-PNMGGKSTL-LRTVCLAV 54 (218)
T ss_pred CCeEEeeeEEe-ecCCcEEEEEC-CCCCchHHH-HHHHHHHH
Confidence 34688999999 99999999999 999999999 45555443
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.79 E-value=1.8e-08 Score=75.72 Aligned_cols=51 Identities=14% Similarity=0.052 Sum_probs=36.5
Q ss_pred CccCCCCCCCCHHHHH-----HHHHHHHHHhcccCCCCEEEeecccCCCC---HHHHHHHHh
Q psy17517 108 GKRFQPMTNLSGGEKT-----VAALALLFAIHSYHPAPFFVLDEIDAALD---NTNIGKVAS 161 (163)
Q Consensus 108 ~~~~~~~~~LSgGqkQ-----rvaiAraL~~~~~~~p~lllLDEPts~LD---~~~~~~i~~ 161 (163)
...+..+..+|+|++| +..+.+++. ..+|+++++|||++.+| ...+..+.+
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~---~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAIE---EFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHHH---HhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 3456677889999998 344444443 26899999999999999 655554443
No 436
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.78 E-value=3.5e-09 Score=90.84 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=29.1
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHH
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 53 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~ 53 (163)
.+|++||++ +++||+++|+| ||||||||| ++
T Consensus 20 ~vL~~Vsl~-i~~GEiv~L~G-~SGsGKSTL-Lr 50 (504)
T TIGR03238 20 RILVKFNKE-LPSSSLLFLCG-SSGDGKSEI-LA 50 (504)
T ss_pred HHHhCCcee-ecCCCEEEEEC-CCCCCHHHH-Hh
Confidence 489999999 99999999999 999999999 55
No 437
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=7.9e-09 Score=96.66 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=46.6
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHHhccc------CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 108 GKRFQPMTNLSGGEKTVAALALLFAIHSY------HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 108 ~~~~~~~~~LSgGqkQrvaiAraL~~~~~------~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+..++++.+|||||++|++||+||++.++ .+|++||+||||++||+.+...+++.|
T Consensus 942 ~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l 1003 (1042)
T TIGR00618 942 TGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGIL 1003 (1042)
T ss_pred CCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHH
Confidence 45567889999999999999999984110 169999999999999999998887653
No 438
>PRK13695 putative NTPase; Provisional
Probab=98.78 E-value=1.1e-08 Score=76.86 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=36.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeec--ccCCCCHHHHHHHHh
Q psy17517 111 FQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE--IDAALDNTNIGKVAS 161 (163)
Q Consensus 111 ~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDE--Pts~LD~~~~~~i~~ 161 (163)
.+....+||+++-+..+++.. +.+|+++++|| |+.++|+.....+.+
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~----l~~~~~lllDE~~~~e~~~~~~~~~l~~ 121 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERA----LEEADVIIIDEIGKMELKSPKFVKAVEE 121 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhc----cCCCCEEEEECCCcchhhhHHHHHHHHH
Confidence 345667999999999888876 47899999999 666777666555544
No 439
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.77 E-value=9.2e-09 Score=96.24 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=45.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhccc----CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSY----HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~----~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..+++.+|||||+++++||+||++..+ .+|+++|+||||++||+.+...+++.|
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l 1000 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDAL 1000 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 457899999999999999999973000 269999999999999999999888753
No 440
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=8.7e-09 Score=98.30 Aligned_cols=45 Identities=33% Similarity=0.335 Sum_probs=40.7
Q ss_pred CCCCCCHHHHH------HHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 113 PMTNLSGGEKT------VAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 113 ~~~~LSgGqkQ------rvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
....|||||+| |++|||+++ .+|++++|||||++||+.+...+.+
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~----~~~~il~lDEPt~~lD~~~~~~l~~ 1246 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFC----LNCGIIALDEPTTNLDRENIESLAH 1246 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHh----cCCCEEEeeCCcccCCHHHHHHHHH
Confidence 44689999999 999999996 7899999999999999999887654
No 441
>KOG0018|consensus
Probab=98.73 E-value=7.8e-09 Score=94.19 Aligned_cols=82 Identities=84% Similarity=1.361 Sum_probs=76.5
Q ss_pred CcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 82 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
..++|.++++.++++++++.+.+.+..++.+.+.+||||||--.|+|..++.|++++.|+++|||..||||..+..+|..
T Consensus 1017 ~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvas 1096 (1141)
T KOG0018|consen 1017 EGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVAS 1096 (1141)
T ss_pred ccceeecCCCCCcchhcCccccccCCccccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHH
Confidence 56777889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hC
Q psy17517 162 YI 163 (163)
Q Consensus 162 ~l 163 (163)
+|
T Consensus 1097 yI 1098 (1141)
T KOG0018|consen 1097 YI 1098 (1141)
T ss_pred HH
Confidence 54
No 442
>PRK03918 chromosome segregation protein; Provisional
Probab=98.68 E-value=1.8e-08 Score=92.32 Aligned_cols=54 Identities=31% Similarity=0.439 Sum_probs=41.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHH--hcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFA--IHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~--~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
-.+.++..|||||+|+++||+.++ ..-+.+|+++||||||++||+.++..+.++
T Consensus 781 g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~ 836 (880)
T PRK03918 781 GKERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDI 836 (880)
T ss_pred CCcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHH
Confidence 335678899999999766664221 111478999999999999999998888764
No 443
>PRK01156 chromosome segregation protein; Provisional
Probab=98.68 E-value=2.4e-08 Score=91.99 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHH------HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 111 FQPMTNLSGGEKTVAALA------LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 111 ~~~~~~LSgGqkQrvaiA------raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
...+..|||||++|++|| |+++ .+|++++|||||++||+.....+.++
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~----~~~~~lilDEpt~~lD~~~~~~l~~~ 849 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLN----NDKSLLIMDEPTAFLDEDRRTNLKDI 849 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhc----cCCCeEEEeCCCCcCCHHHHHHHHHH
Confidence 456889999999999865 6664 78999999999999999998877553
No 444
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.66 E-value=1.2e-07 Score=80.96 Aligned_cols=116 Identities=9% Similarity=0.068 Sum_probs=70.8
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCC-CCchhHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPE-NPEEPYL 97 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~-~~~~~~~ 97 (163)
..+++++ +. +.+|+.++|+| +||+||||| +.++.+...+... .+.. .+.+ ....+++
T Consensus 144 iraID~l-l~-I~~Gqri~I~G-~sG~GKTtL-l~~Ia~~~~~~~g----------vI~~--------iGerg~ev~e~~ 201 (432)
T PRK06793 144 IKSIDSM-LT-IGIGQKIGIFA-GSGVGKSTL-LGMIAKNAKADIN----------VISL--------VGERGREVKDFI 201 (432)
T ss_pred CEEEecc-ce-ecCCcEEEEEC-CCCCChHHH-HHHHhccCCCCeE----------EEEe--------CCCCcccHHHHH
Confidence 5688885 98 99999999999 999999999 5666666543110 0000 0000 1111111
Q ss_pred H-hchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh---cccCCCCEEEeecccCCCCHHHH
Q psy17517 98 Q-GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI---HSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 98 ~-~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~---~~~~~p~lllLDEPts~LD~~~~ 156 (163)
+ .++.........-....+.|.|+|+|++.+.+... ..-.++-++++|+||+..|+..+
T Consensus 202 ~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~re 264 (432)
T PRK06793 202 RKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRS 264 (432)
T ss_pred HHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHH
Confidence 1 11110000001113457889999999998887531 01167899999999999999743
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.57 E-value=7.8e-07 Score=61.95 Aligned_cols=99 Identities=22% Similarity=0.077 Sum_probs=58.5
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHHHhchhcccCCCccC
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRF 111 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (163)
.+..+.++| |+|+||||++..++..+.... ..+++...+.... ....... .....
T Consensus 1 ~~~~~~l~G-~~G~GKTtl~~~l~~~~~~~~-----------~~~~~~~~~~~~~-------~~~~~~~------~~~~~ 55 (148)
T smart00382 1 PGEVILIVG-PPGSGKTTLARALARELGPPG-----------GGVIYIDGEDILE-------EVLDQLL------LIIVG 55 (148)
T ss_pred CCCEEEEEC-CCCCcHHHHHHHHHhccCCCC-----------CCEEEECCEEccc-------cCHHHHH------hhhhh
Confidence 367889999 999999999766555554422 1111111110000 0000000 01112
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHH
Q psy17517 112 QPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159 (163)
Q Consensus 112 ~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i 159 (163)
.......+.+..+..++++-. .+|.++++||+..-.+.......
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~----~~~~viiiDei~~~~~~~~~~~~ 99 (148)
T smart00382 56 GKKASGSGELRLRLALALARK----LKPDVLILDEITSLLDAEQEALL 99 (148)
T ss_pred ccCCCCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHH
Confidence 223467778888878887773 44799999999999998876544
No 446
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.53 E-value=5.1e-08 Score=66.10 Aligned_cols=53 Identities=32% Similarity=0.390 Sum_probs=37.6
Q ss_pred CCCCCCCCHHHH-HHHHHHHHHHhcc--------cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 111 FQPMTNLSGGEK-TVAALALLFAIHS--------YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 111 ~~~~~~LSgGqk-QrvaiAraL~~~~--------~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+....+||||| ..++++.++++.. -..|.+++||||++.||+.....+++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l 88 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLL 88 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 456789999999 4444444333211 1247999999999999999999988753
No 447
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.51 E-value=3.4e-07 Score=73.90 Aligned_cols=26 Identities=19% Similarity=-0.043 Sum_probs=21.3
Q ss_pred CeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
..++++| ||||||||| ++.+.++..+
T Consensus 112 ~~~~i~g-~~g~GKttl-~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIIS-PPQCGKTTL-LRDLARILST 137 (270)
T ss_pred eEEEEEc-CCCCCHHHH-HHHHhCccCC
Confidence 5679999 999999999 5667777665
No 448
>PRK00064 recF recombination protein F; Reviewed
Probab=98.51 E-value=1.3e-07 Score=79.22 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhc-----ccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 114 MTNLSGGEKTVAALALLFAIH-----SYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 114 ~~~LSgGqkQrvaiAraL~~~-----~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
...+|.||+|++++|+.|+.. ...+|++++||||+++||+..+..+.+.
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~ 324 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLER 324 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHH
Confidence 468999999999999998631 1268999999999999999999988765
No 449
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=1.1e-07 Score=79.73 Aligned_cols=49 Identities=27% Similarity=0.315 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHHh-----cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 115 TNLSGGEKTVAALALLFAI-----HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 115 ~~LSgGqkQrvaiAraL~~-----~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..+|.||++++++|.+|+. ....+|++++||||+|.||+..+..+.+.|
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l 327 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELL 327 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHH
Confidence 5699999999999999974 111279999999999999999999888753
No 450
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.49 E-value=1.6e-07 Score=89.89 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=43.1
Q ss_pred cCCCCCCCCHHHHHHHH----HHHHHH----hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 110 RFQPMTNLSGGEKTVAA----LALLFA----IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrva----iAraL~----~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+.....|||||||+++ +|++++ .....+|++++||||++++|+.+...+++++
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll 1302 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLL 1302 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 34457899999999996 575533 1124789999999999999999999988753
No 451
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.48 E-value=1.1e-07 Score=72.60 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=32.0
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHH
Q psy17517 107 PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTN 155 (163)
Q Consensus 107 ~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~ 155 (163)
......+..++|.|++++..+ . +.+++++|+|+|.+..++..
T Consensus 74 ~~~~~~p~~d~~~~~~~~~~~---~----i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 74 GKSVEIPVYDFKTHSRLKETV---T----VYPADVIILEGILALYDKEL 115 (198)
T ss_pred CCCEeccccccccCcccCCce---e----cCCCCEEEEechhhccchhH
Confidence 345566778889988876554 2 47899999999999998644
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.40 E-value=6.5e-07 Score=70.23 Aligned_cols=114 Identities=8% Similarity=-0.033 Sum_probs=61.6
Q ss_pred CcccCe-eeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc-ccc-----ccccccCHHHHHHhccccCCCcccccCCCCC
Q psy17517 20 PYLQGV-NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI-HRI-----ATIRSLGLEDLRSMALAQNQSAQAFLGPENP 92 (163)
Q Consensus 20 ~~l~~v-sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l-~~~-----~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 92 (163)
+-|+.+ .=- +++|.++.+.| ++|+|||||+..++... ..- ... +-+.+++.+++-.-. ..
T Consensus 12 ~~LD~~l~gG-~~~g~~~~i~G-~~GsGKt~l~~~~~~~~~~~g~~~~y~~~-e~~~~~~~~~~~~~g--------~~-- 78 (234)
T PRK06067 12 EELDRKLGGG-IPFPSLILIEG-DHGTGKSVLSQQFVYGALKQGKKVYVITT-ENTSKSYLKQMESVK--------ID-- 78 (234)
T ss_pred HHHHHhhCCC-CcCCcEEEEEC-CCCCChHHHHHHHHHHHHhCCCEEEEEEc-CCCHHHHHHHHHHCC--------CC--
Confidence 344443 235 89999999999 99999999976654332 211 111 122333333320000 00
Q ss_pred chhHH-H-hchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCC
Q psy17517 93 EEPYL-Q-GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152 (163)
Q Consensus 93 ~~~~~-~-~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD 152 (163)
..+.. + .+.+ ....-......|.++++.+...+.++.. .+|+++++||||+.+|
T Consensus 79 ~~~~~~~g~l~i----~~~~~~~~~~~~~~~~~ll~~l~~~i~~--~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 79 ISDFFLWGYLRI----FPLNTEGFEWNSTLANKLLELIIEFIKS--KREDVIIIDSLTIFAT 134 (234)
T ss_pred hhHHHhCCCceE----EeccccccccCcchHHHHHHHHHHHHHh--cCCCEEEEecHHHHHh
Confidence 00000 0 0011 0000111234567888999998888642 4899999999996544
No 453
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.35 E-value=4.2e-07 Score=86.09 Aligned_cols=70 Identities=54% Similarity=0.965 Sum_probs=61.1
Q ss_pred hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 94 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+++..++.+..-|.++..+++..||||||-.+|||..+|++++++.|+++|||-.++||..+..++.++|
T Consensus 1044 d~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i 1113 (1163)
T COG1196 1044 DPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLI 1113 (1163)
T ss_pred chhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHH
Confidence 3444566666666778888999999999999999999999999999999999999999999999988764
No 454
>PRK14079 recF recombination protein F; Provisional
Probab=98.33 E-value=6.7e-07 Score=74.57 Aligned_cols=48 Identities=31% Similarity=0.443 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHHh-----cccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 115 TNLSGGEKTVAALALLFAI-----HSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 115 ~~LSgGqkQrvaiAraL~~-----~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..+|+||++++++|+.|+. ....+|++++||||+|.||...+..+.+.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~ 314 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLAL 314 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHH
Confidence 5689999999999999861 11157999999999999999999988765
No 455
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.31 E-value=7.3e-07 Score=75.41 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=37.9
Q ss_pred ccceeeCCCCCCCCccc-----------CeeeEeeCCCCeEEeecCCCCChHHHHHHHH
Q psy17517 7 SAQAFLGPENPEEPYLQ-----------GVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~-----------~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
.+++|.||+. +.+|+ |+++. |.+|+.++|+| |+||||||++..+
T Consensus 134 e~LTf~YP~e--r~~Le~~~~~~~~R~id~~~p-ig~Gq~~~IvG-~~g~GKTtL~~~i 188 (415)
T TIGR00767 134 ENLTPLYPNE--RLRLETSTEDLSTRVLDLFAP-IGKGQRGLIVA-PPKAGKTVLLQKI 188 (415)
T ss_pred EEeeecCCCc--cceeecCccccceeeeeeEEE-eCCCCEEEEEC-CCCCChhHHHHHH
Confidence 3788999963 47896 99999 99999999999 9999999995443
No 456
>PRK02224 chromosome segregation protein; Provisional
Probab=98.30 E-value=6.1e-07 Score=82.55 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHH------HHHHHHHHHhcccC-C-CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 112 QPMTNLSGGEKT------VAALALLFAIHSYH-P-APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 112 ~~~~~LSgGqkQ------rvaiAraL~~~~~~-~-p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..+..||||||+ |++++++++..... . ++++|+||||++||+.....+.++
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~ 835 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDL 835 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHH
Confidence 357899999999 88888888642111 2 267999999999999999888764
No 457
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.30 E-value=1.1e-06 Score=55.61 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=26.1
Q ss_pred ccCeeeEeeCC-CCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 22 LQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 22 l~~vsl~~i~~-Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
+++-.++ +.+ |+.+.|.| +|||||||++-++...+.
T Consensus 12 f~~~~~~-~~~~g~~tli~G-~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETID-FDPRGDVTLITG-PNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEe-ecCCCcEEEEEC-CCCCCHHHHHHHHHHHHc
Confidence 3445677 664 57999999 999999999655444444
No 458
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=3.7e-06 Score=60.85 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCH
Q psy17517 118 SGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153 (163)
Q Consensus 118 SgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~ 153 (163)
+..+.++++.+++. ..+|+++++||+++-++.
T Consensus 69 ~~~~~~~~~~~~~~----~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 69 AAARLLSKAERLRE----RGGDDLIILDELTRLVRA 100 (165)
T ss_pred cHHHHHHHHHHHHh----CCCCEEEEEEcHHHHHHH
Confidence 34455556666666 478999999999965443
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.29 E-value=8.6e-07 Score=69.83 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=18.1
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
|.+..++| |+|+|||||++.+..
T Consensus 1 g~~~ll~g-~~G~GKS~lal~la~ 23 (239)
T cd01125 1 GYVSALVA-PGGTGKSSLLLVLAL 23 (239)
T ss_pred CceeEEEc-CCCCCHHHHHHHHHH
Confidence 56677888 999999999755543
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.24 E-value=3.7e-06 Score=72.81 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=29.4
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++.++. +..|++++++| |||+||||++.++...+
T Consensus 244 ~~~~~~~~~-~~~g~Vi~LvG-pnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 244 PVLDSEDAL-LDRGGVFALMG-PTGVGKTTTTAKLAARC 280 (484)
T ss_pred hhccCcccc-ccCCcEEEEEC-CCCccHHHHHHHHHHHH
Confidence 356677887 88999999999 99999999965544333
No 461
>KOG0933|consensus
Probab=98.08 E-value=8.8e-07 Score=80.75 Aligned_cols=67 Identities=33% Similarity=0.647 Sum_probs=52.9
Q ss_pred HHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 96 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++++.+.....+.-...-.+||||||..||++..|++-+..++|++||||..||||..+..-|..+
T Consensus 1062 ~~dGLEvkV~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~m 1128 (1174)
T KOG0933|consen 1062 VLDGLEVKVKFGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRM 1128 (1174)
T ss_pred cccceEEEEEeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHH
Confidence 4555544333233444566899999999999999999998899999999999999999888776554
No 462
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.08 E-value=4e-06 Score=63.44 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+||+++++| +|||||||++ +.+.++..+
T Consensus 2 ~ge~i~l~G-~sGsGKSTl~-~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMG-VSGSGKSLIG-SKIAALFSA 29 (176)
T ss_pred CCcEEEEEC-CCCCCHHHHH-HHHHHhcCC
Confidence 589999999 9999999995 445555544
No 463
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.07 E-value=2.6e-06 Score=72.91 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=34.6
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ ++ +.+||+++|+| +||+||||| +.++.+...+
T Consensus 142 Gi~aID~l-l~-I~~GQ~igI~G-~sGaGKSTL-l~~I~g~~~~ 181 (434)
T PRK07196 142 GVNAINGL-LT-IGKGQRVGLMA-GSGVGKSVL-LGMITRYTQA 181 (434)
T ss_pred ceeeccce-Ee-EecceEEEEEC-CCCCCccHH-HHHHhcccCC
Confidence 35699999 99 99999999999 999999999 5667776654
No 464
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.04 E-value=1.2e-05 Score=61.71 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=18.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhccc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
++.++| |+||||||++..++..+.
T Consensus 3 lilI~G-ptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTG-PTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHhh
Confidence 577888 999999999655544443
No 465
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.03 E-value=5.8e-06 Score=76.69 Aligned_cols=53 Identities=34% Similarity=0.533 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhccc--CC--CCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 111 FQPMTNLSGGEKTVAALALLFAIHSY--HP--APFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 111 ~~~~~~LSgGqkQrvaiAraL~~~~~--~~--p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+.+.+|||||+=.++||-+|++..+ .+ =+++||||||..||+.+...+++.|
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l 866 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL 866 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHH
Confidence 46789999999999999998876544 33 4899999999999999999888753
No 466
>KOG0964|consensus
Probab=98.03 E-value=1.4e-06 Score=79.20 Aligned_cols=52 Identities=56% Similarity=0.837 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 112 QPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 112 ~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..+.+||||||-.||||..++++++.++++++|||-.+|||+..+..+..+|
T Consensus 1093 ~~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lI 1144 (1200)
T KOG0964|consen 1093 LEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLI 1144 (1200)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999998887653
No 467
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.03 E-value=5.3e-06 Score=71.20 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=39.6
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
..++..|.+ +..+++.++ + +.+||+++|+| +|||||||| +.++.++..+
T Consensus 143 ~~v~~~l~T--Gi~aID~L~-~-I~~Gqri~I~G-~SGsGKTTL-L~~Ia~l~~p 191 (450)
T PRK06002 143 ARVETGLRT--GVRVIDIFT-P-LCAGQRIGIFA-GSGVGKSTL-LAMLARADAF 191 (450)
T ss_pred ecceEEcCC--CcEEeeeec-e-ecCCcEEEEEC-CCCCCHHHH-HHHHhCCCCC
Confidence 345556654 367999985 8 99999999999 999999999 6777777655
No 468
>KOG0996|consensus
Probab=98.02 E-value=1.4e-06 Score=80.47 Aligned_cols=68 Identities=51% Similarity=0.948 Sum_probs=55.5
Q ss_pred hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 95 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++-+++.+..-|..+--+++.+||||||-..++|..+|+|.+++.|++++||-.+|||..+.-.|.++
T Consensus 1174 PFseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanY 1241 (1293)
T KOG0996|consen 1174 PFSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANY 1241 (1293)
T ss_pred CcccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHH
Confidence 34444444333444556789999999999999999999999999999999999999999988777654
No 469
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.01 E-value=3.7e-06 Score=64.84 Aligned_cols=25 Identities=24% Similarity=0.044 Sum_probs=21.1
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
++|++++|+| |||||||||+..+..
T Consensus 4 ~~g~vi~I~G-~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGG-GSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEEC-CCCCCHHHHHHHHHH
Confidence 6799999999 999999999655443
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.99 E-value=2.9e-06 Score=64.47 Aligned_cols=38 Identities=18% Similarity=0.003 Sum_probs=28.6
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
..+=+.+. +..|+.++++| ||||||||++ +.+.++.++
T Consensus 14 ~~~~l~~~-v~~g~~i~I~G-~tGSGKTTll-~aL~~~i~~ 51 (186)
T cd01130 14 QAAYLWLA-VEARKNILISG-GTGSGKTTLL-NALLAFIPP 51 (186)
T ss_pred HHHHHHHH-HhCCCEEEEEC-CCCCCHHHHH-HHHHhhcCC
Confidence 33445566 89999999999 9999999995 445555443
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.98 E-value=5.4e-06 Score=62.89 Aligned_cols=25 Identities=32% Similarity=0.169 Sum_probs=20.4
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
|++++|+| ||||||||++ +++....
T Consensus 2 g~~i~l~G-~sGsGKsTl~-~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMG-PSGSGKDSLL-AALRQRE 26 (186)
T ss_pred CcEEEEEC-CCCCCHHHHH-HHHhccC
Confidence 78999999 9999999995 5455544
No 472
>PRK15494 era GTPase Era; Provisional
Probab=97.94 E-value=8.8e-06 Score=67.61 Aligned_cols=47 Identities=13% Similarity=-0.014 Sum_probs=40.0
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCC-------eEEeecCCCCChHHHHHHHHHhc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGK-------RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge-------~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.+.+|+||. ...++..++++ ++.|+ .++++| .+|+|||||+.++++.
T Consensus 22 ~~~~~~~~~--~~~~~~~~~~~-~~~g~~~~~k~~kV~ivG-~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 22 LAAAVREDA--STGSTSKLPLE-VKFGKMSNQKTVSVCIIG-RPNSGKSTLLNRIIGE 75 (339)
T ss_pred ccccccCCC--CcccccCCccc-cccccccccceeEEEEEc-CCCCCHHHHHHHHhCC
Confidence 377899994 46799999999 99999 999999 9999999996555543
No 473
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.91 E-value=1.9e-05 Score=60.00 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccCCC-CEEEeecccCCCCHHHHHHHHhh
Q psy17517 113 PMTNLSGGEKTVAALALLFAIHSYHPA-PFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 113 ~~~~LSgGqkQrvaiAraL~~~~~~~p-~lllLDEPts~LD~~~~~~i~~~ 162 (163)
....+|.|++|.+.++..+... .+. .++++|||.++|+|..++++.+.
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~--~~~~~illiDEpE~~LHp~~q~~l~~~ 281 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSA--KKNGSILLIDEPENHLHPSWQRKLIEL 281 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTT--TTT-SEEEEESSSTTSSHHHHHHHHHH
T ss_pred eeccCCHHHHHHHHHHHHHhCc--CCCCeEEEecCCcCCCCHHHHHHHHHH
Confidence 3567899999999888888743 222 99999999999999999998865
No 474
>PRK08149 ATP synthase SpaL; Validated
Probab=97.89 E-value=9.8e-06 Score=69.25 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=34.2
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ ++ +.+||+++|+| +||+||||| +.++.+...+
T Consensus 138 Gi~aid~l-l~-i~~Gq~i~I~G-~sG~GKTTL-l~~i~~~~~~ 177 (428)
T PRK08149 138 GVRAIDGL-LT-CGVGQRMGIFA-SAGCGKTSL-MNMLIEHSEA 177 (428)
T ss_pred CcEEEeee-ee-EecCCEEEEEC-CCCCChhHH-HHHHhcCCCC
Confidence 35799999 99 99999999999 999999999 5666665543
No 475
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.88 E-value=1.6e-05 Score=65.78 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=34.7
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ +. +.+||+++|+| +||+||||| +.++.+...+
T Consensus 56 Gi~aiD~l-~~-i~~Gqri~I~G-~sG~GKTtL-l~~Ia~~~~~ 95 (326)
T cd01136 56 GVRAIDGL-LT-VGKGQRLGIFA-GSGVGKSTL-LGMIARGTTA 95 (326)
T ss_pred CcEEEeee-eE-EcCCcEEEEEC-CCCCChHHH-HHHHhCCCCC
Confidence 36799999 99 99999999999 999999999 5667766654
No 476
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.88 E-value=8.7e-06 Score=61.17 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=25.7
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+++++++ +.+| +++|+| |||+||||++-.+...+
T Consensus 9 ~~~~~~i~-f~~g-~~vi~G-~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 9 SFKDLEID-FSPG-LNVIYG-PNGSGKSTILEAIRYAL 43 (202)
T ss_dssp TEEEEEEE---SE-EEEEEE-STTSSHHHHHHHHHHHH
T ss_pred CCcceEEE-cCCC-cEEEEC-CCCCCHHHHHHHHHHHH
Confidence 45788898 8776 999999 99999999964443333
No 477
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.87 E-value=2.1e-06 Score=68.21 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=37.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCC-eEEeecCCCCChHHHHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGK-RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge-~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+..|.|++.....++..++.. +.++. +++++| |+|+||||++..+...
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~l~G-~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 18 DPDFFYPSKGHKRAMAYLEYG-LSQREGFILITG-EVGAGKTTLIRNLLKR 66 (269)
T ss_pred CHHHhCCCHHHHHHHHHHHHH-HhcCCCEEEEEc-CCCCCHHHHHHHHHHh
Confidence 446778876566799999998 88766 888999 9999999996554433
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.85 E-value=1.3e-05 Score=61.37 Aligned_cols=26 Identities=27% Similarity=0.119 Sum_probs=21.5
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
++|++++|+| |||||||||+..+...
T Consensus 3 ~~g~~i~i~G-~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSG-PSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHhh
Confidence 6899999999 9999999996444433
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.82 E-value=1.5e-05 Score=59.66 Aligned_cols=23 Identities=30% Similarity=0.105 Sum_probs=19.3
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
|++++++| ||||||||++..+..
T Consensus 1 g~ii~l~G-~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISG-PSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHc
Confidence 78999999 999999999655443
No 480
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.80 E-value=6.4e-05 Score=62.53 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=21.9
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
.++..+.+.| |+||||||++..++..+.
T Consensus 120 ~~~g~ili~G-~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 120 RPRGLILVTG-PTGSGKSTTLASMIDYIN 147 (343)
T ss_pred hcCcEEEEEC-CCCCCHHHHHHHHHHhhC
Confidence 5688999999 999999999655554443
No 481
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.79 E-value=1.9e-05 Score=67.73 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=34.9
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ +. +.+|++++|+| +||+||||| +.++.+...+
T Consensus 145 g~~vid~l-~~-i~~Gq~i~I~G-~sG~GKStL-l~~I~~~~~~ 184 (438)
T PRK07721 145 GVRAIDSL-LT-VGKGQRVGIFA-GSGVGKSTL-MGMIARNTSA 184 (438)
T ss_pred chhhhhee-ee-ecCCcEEEEEC-CCCCCHHHH-HHHHhcccCC
Confidence 35689999 99 99999999999 999999999 5677777655
No 482
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.79 E-value=1.8e-05 Score=59.35 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=18.7
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
|++++|+| ||||||||++..+..
T Consensus 1 ~~~~~i~G-~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 1 GRLIYVVG-PSGAGKDTLLDYARA 23 (179)
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHH
Confidence 67899999 999999999654433
No 483
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.78 E-value=2.3e-05 Score=67.13 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
..+++.+ ++ +.+||+++|+| +||+||||| ++++.+...+
T Consensus 150 i~aID~l-l~-i~~GqrigI~G-~sG~GKSTL-L~~I~~~~~~ 188 (444)
T PRK08972 150 VRAINAM-LT-VGKGQRMGLFA-GSGVGKSVL-LGMMTRGTTA 188 (444)
T ss_pred ceeecce-EE-EcCCCEEEEEC-CCCCChhHH-HHHhccCCCC
Confidence 5588888 98 99999999999 999999999 5666665433
No 484
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.77 E-value=2.3e-05 Score=67.38 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=34.2
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ +. +.+||+++|+| +||+||||| +.++.+...+
T Consensus 155 Gi~aID~l-~~-I~~GqrigI~G-~sG~GKSTL-l~~I~g~~~~ 194 (451)
T PRK05688 155 GIRSINGL-LT-VGRGQRLGLFA-GTGVGKSVL-LGMMTRFTEA 194 (451)
T ss_pred ceeeecce-EE-ecCCcEEEEEC-CCCCCHHHH-HHHHhCCCCC
Confidence 46799999 98 99999999999 999999999 5667666544
No 485
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.77 E-value=1.9e-05 Score=67.56 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=34.8
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ ++ +.+||+++|+| +||+||||| +.++.+...+
T Consensus 142 Gi~aID~l-l~-i~~GqrigI~G-~sG~GKSTL-L~~I~~~~~~ 181 (433)
T PRK07594 142 GIRAIDSV-AT-CGEGQRVGIFS-APGVGKSTL-LAMLCNAPDA 181 (433)
T ss_pred Cceeeeee-ee-cCCCCEEEEEC-CCCCCccHH-HHHhcCCCCC
Confidence 46799999 99 99999999999 999999999 5667766654
No 486
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=2.4e-05 Score=65.86 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.+++++.++. +..|++++++| |||+||||++.++..
T Consensus 124 l~~~~~~~~~-~~~g~ii~lvG-ptGvGKTTtiakLA~ 159 (374)
T PRK14722 124 LPVLDSEDAL-MERGGVFALMG-PTGVGKTTTTAKLAA 159 (374)
T ss_pred chhhcCCCcc-ccCCcEEEEEC-CCCCCHHHHHHHHHH
Confidence 4577788888 99999999999 999999999655543
No 487
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.73 E-value=0.00017 Score=54.26 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=32.3
Q ss_pred CCCCCCCCHHHHHHHH--HHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 111 FQPMTNLSGGEKTVAA--LALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 111 ~~~~~~LSgGqkQrva--iAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..++..+++|++|++. +++.+-. .+++++ |+|++|..+..++.+.
T Consensus 142 ~nK~Dl~~~~~~~~~~~~i~~~l~~---~~~~~~----~~Sa~~~~gi~~l~~~ 188 (196)
T PRK00454 142 LTKADKLKKGERKKQLKKVRKALKF---GDDEVI----LFSSLKKQGIDELRAA 188 (196)
T ss_pred EECcccCCHHHHHHHHHHHHHHHHh---cCCceE----EEEcCCCCCHHHHHHH
Confidence 3466778999999877 5566531 133433 9999999998888764
No 488
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.72 E-value=3.2e-05 Score=66.13 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=34.9
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ ++ +.+|++++|+| +||+||||| +.++.+...+
T Consensus 132 G~~~id~l-~~-i~~Gq~~~I~G-~sG~GKStL-l~~I~~~~~~ 171 (422)
T TIGR02546 132 GVRAIDGL-LT-CGEGQRIGIFA-GAGVGKSTL-LGMIARGASA 171 (422)
T ss_pred Cceeehhh-cc-ccCCCEEEEEC-CCCCChHHH-HHHHhCCCCC
Confidence 46799999 99 99999999999 999999999 6667766654
No 489
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.72 E-value=3.1e-05 Score=66.03 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=33.7
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
..+++.+ ++ +.+||+++|+| +||+||||| +.++.+...+
T Consensus 125 i~~id~l-~~-i~~Gq~~~I~G-~sG~GKTtL-l~~I~~~~~~ 163 (411)
T TIGR03496 125 VRAINGL-LT-VGRGQRMGIFA-GSGVGKSTL-LGMMARYTEA 163 (411)
T ss_pred EEeecce-EE-EecCcEEEEEC-CCCCCHHHH-HHHHhcCCCC
Confidence 6799999 99 99999999999 999999999 5666666544
No 490
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.71 E-value=0.00014 Score=52.39 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhc-ccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 112 QPMTNLSGGEKTVAALALLFAIH-SYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 112 ~~~~~LSgGqkQrvaiAraL~~~-~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+...+++++.++........+. ....++++ |+|++|..+..++.+.|
T Consensus 118 nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l 166 (170)
T cd01876 118 TKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALI 166 (170)
T ss_pred EchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHH
Confidence 44566788888877666553321 12445655 99999999998887653
No 491
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.70 E-value=4.4e-05 Score=69.24 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=42.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++...+|||||.||+-+|.-+-.. +. -=+++||||+.||-+.-..++.+.
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~-Lt-GVlYVLDEPSIGLHqrDn~rLi~t 525 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSG-LT-GVLYVLDEPSIGLHQRDNERLIET 525 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhccc-ce-eeEEEecCCccCCChhhHHHHHHH
Confidence 3577899999999999999998543 22 367999999999999988887764
No 492
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.70 E-value=4.1e-05 Score=65.72 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=34.4
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ ++ +.+|++++|+| +||+||||| ++++.+...+
T Consensus 150 Gi~~ID~l-~~-i~~Gq~~~I~G-~sG~GKTtL-l~~ia~~~~~ 189 (441)
T PRK09099 150 GVRIVDGL-MT-LGEGQRMGIFA-PAGVGKSTL-MGMFARGTQC 189 (441)
T ss_pred Cceeccce-ee-ecCCCEEEEEC-CCCCCHHHH-HHHHhCCCCC
Confidence 46799999 98 99999999999 999999999 5667666544
No 493
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.69 E-value=4e-05 Score=65.68 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=34.0
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ ++ +.+|++++|+| +||+||||| +.++.+...+
T Consensus 149 Gi~vid~l-~~-i~~Gq~~~I~G-~sG~GKStL-l~~Ia~~~~~ 188 (439)
T PRK06936 149 GVRVIDGL-LT-CGEGQRMGIFA-AAGGGKSTL-LASLIRSAEV 188 (439)
T ss_pred Ccceeeee-EE-ecCCCEEEEEC-CCCCChHHH-HHHHhcCCCC
Confidence 35699999 99 99999999999 999999999 5666665543
No 494
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=2.7e-05 Score=70.67 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=29.0
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
++++++++. ++.|++++++| |||+||||++.++..
T Consensus 173 ~il~~~~~~-~~~g~Vi~lVG-pnGvGKTTTiaKLA~ 207 (767)
T PRK14723 173 PVLRDEDAL-LAQGGVLALVG-PTGVGKTTTTAKLAA 207 (767)
T ss_pred hhccCCCcc-cCCCeEEEEEC-CCCCcHHHHHHHHHh
Confidence 367788898 88999999999 999999999544443
No 495
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.68 E-value=3e-05 Score=66.65 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+..+++++ +. +.+||+++|+| +||+||||| +.++.+...+
T Consensus 150 Gi~~iD~l-~~-i~~Gq~~~I~G-~sG~GKStL-l~~I~~~~~~ 189 (440)
T TIGR01026 150 GVRSIDGL-LT-VGKGQRIGIFA-GSGVGKSTL-LGMIARNTEA 189 (440)
T ss_pred eeeeeeec-cc-cCCCcEEEEEC-CCCCCHHHH-HHHHhCCCCC
Confidence 36799999 98 99999999999 999999999 5666666554
No 496
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.68 E-value=5.8e-05 Score=69.45 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCCCEEEeecccCCC-CHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAAL-DNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~L-D~~~~~~i~~~ 162 (163)
.+|.++++|||+.+| |+.....+.+.
T Consensus 651 ~~p~illlDE~~~~L~d~~~~~~i~~~ 677 (818)
T PRK13830 651 GAPSLIILDEAWLMLGHPVFRDKIREW 677 (818)
T ss_pred CCCcEEEEECchhhcCCHHHHHHHHHH
Confidence 689999999999999 68877776654
No 497
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.68 E-value=0.00011 Score=65.71 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.7
Q ss_pred EEEeecccCCCCHHHHHHHHhh
Q psy17517 141 FFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 141 lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|++|| +..||+..+..+.+.
T Consensus 268 vL~LDE-i~~Ld~~~Q~~Ll~~ 288 (615)
T TIGR02903 268 VLFIDE-IGELDPLLQNKLLKV 288 (615)
T ss_pred eEEEec-cccCCHHHHHHHHHH
Confidence 899999 799999999888765
No 498
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=0.00022 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=19.7
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.+..+.+.| |+|+||||++..+...
T Consensus 18 ~~~~v~i~G-~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYG-PPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEEC-CCCCCHHHHHHHHHHH
Confidence 477889999 9999999996554433
No 499
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.65 E-value=2.1e-06 Score=74.45 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=51.4
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHh-cccc---c---ccccccCHHHHHHhc---cccCC----Ccccc-cC--CCCC
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLF-AIHR---I---ATIRSLGLEDLRSMA---LAQNQ----SAQAF-LG--PENP 92 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~-~l~~---~---~~i~~~~~~~~~~~~---~~q~~----~~~~~-~~--~~~~ 92 (163)
+++|..+.|.| ++|||||||++.++. +... + .... -+..++++.+ .+... +..++ .. +...
T Consensus 18 lp~g~~~Li~G-~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 18 LPIGRSTLVSG-TSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCCCeEEEEEc-CCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhc
Confidence 88999999999 999999999765533 3332 1 1111 2333443332 22111 11111 11 1111
Q ss_pred chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 93 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
...+.+.+++ .+..++....+|+|++|||.|+++.
T Consensus 96 ~~~~~~~~~l----~~~l~~i~~~ls~g~~qRVvIDSl~ 130 (484)
T TIGR02655 96 GQDVVGGFDL----SALIERINYAIRKYKAKRVSIDSVT 130 (484)
T ss_pred cccccccCCH----HHHHHHHHHHHHHhCCcEEEEeehh
Confidence 1112333333 3445556678889999999888543
No 500
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.64 E-value=9.1e-05 Score=66.50 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccC--CCCEEEeecccCCCCHHHHHHHHh
Q psy17517 113 PMTNLSGGEKTVAALALLFAIHSYH--PAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 113 ~~~~LSgGqkQrvaiAraL~~~~~~--~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
.+..|||||+|-+++|..+++.++. +.++ |+|||++.||...+..+.+
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~ 597 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVV 597 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHH
Confidence 5688999999999998887765433 3566 5699999999999988764
Done!