Query psy17517
Match_columns 163
No_of_seqs 121 out of 2242
Neff 7.8
Searched_HMMs 29240
Date Sat Aug 17 00:36:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-37 4E-42 249.8 8.0 143 8-163 12-186 (275)
2 3nh6_A ATP-binding cassette SU 100.0 3.7E-36 1.3E-40 244.3 12.4 144 8-162 58-232 (306)
3 3tui_C Methionine import ATP-b 100.0 2.7E-36 9.4E-41 250.0 11.0 143 8-163 29-206 (366)
4 3tif_A Uncharacterized ABC tra 100.0 2.4E-36 8.3E-41 236.9 9.9 143 8-163 6-188 (235)
5 4g1u_C Hemin import ATP-bindin 100.0 2.6E-36 8.9E-41 240.8 9.8 142 8-163 16-190 (266)
6 2ixe_A Antigen peptide transpo 100.0 1.6E-35 5.5E-40 236.8 14.2 143 8-163 21-199 (271)
7 2pcj_A ABC transporter, lipopr 100.0 1.6E-35 5.5E-40 230.7 10.6 139 8-162 9-182 (224)
8 2ff7_A Alpha-hemolysin translo 100.0 5.7E-35 2E-39 230.7 13.8 147 7-163 11-188 (247)
9 2olj_A Amino acid ABC transpor 100.0 3.3E-35 1.1E-39 234.2 11.0 140 8-163 29-202 (263)
10 1ji0_A ABC transporter; ATP bi 100.0 6E-35 2E-39 229.6 11.9 140 8-163 11-182 (240)
11 1g6h_A High-affinity branched- 100.0 2.1E-35 7.1E-40 234.3 9.1 142 8-163 12-196 (257)
12 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-35 4.9E-40 245.3 8.3 138 8-161 9-179 (359)
13 3rlf_A Maltose/maltodextrin im 100.0 3.2E-36 1.1E-40 250.8 4.1 137 8-162 8-175 (381)
14 2ihy_A ABC transporter, ATP-bi 100.0 2.1E-35 7.2E-40 237.1 8.5 142 8-163 26-204 (279)
15 1vpl_A ABC transporter, ATP-bi 100.0 4.8E-35 1.7E-39 232.4 10.0 139 8-163 20-189 (256)
16 1b0u_A Histidine permease; ABC 100.0 4.6E-35 1.6E-39 233.1 9.0 140 8-163 11-196 (262)
17 2ghi_A Transport protein; mult 100.0 3E-34 1E-38 228.1 13.3 146 8-162 22-197 (260)
18 1z47_A CYSA, putative ABC-tran 100.0 9.3E-35 3.2E-39 240.2 10.3 138 8-162 19-187 (355)
19 3gd7_A Fusion complex of cysti 100.0 7E-35 2.4E-39 243.6 9.3 141 8-162 24-197 (390)
20 2yyz_A Sugar ABC transporter, 100.0 3.3E-35 1.1E-39 243.3 7.2 137 8-162 8-175 (359)
21 2yz2_A Putative ABC transporte 100.0 1.4E-34 4.7E-39 230.7 10.5 145 8-163 7-181 (266)
22 3d31_A Sulfate/molybdate ABC t 100.0 7.4E-35 2.5E-39 240.3 8.9 136 8-162 6-169 (348)
23 3qf4_A ABC transporter, ATP-bi 100.0 5.3E-34 1.8E-38 248.9 13.4 145 8-162 346-521 (587)
24 2it1_A 362AA long hypothetical 100.0 2.4E-34 8.2E-39 238.3 10.4 137 8-162 8-175 (362)
25 1mv5_A LMRA, multidrug resista 100.0 8.7E-35 3E-39 228.9 7.2 144 8-162 6-181 (243)
26 1v43_A Sugar-binding transport 100.0 5.5E-35 1.9E-39 243.0 6.1 137 8-162 16-183 (372)
27 1sgw_A Putative ABC transporte 100.0 2.1E-34 7E-39 223.4 8.4 137 8-162 15-175 (214)
28 2nq2_C Hypothetical ABC transp 100.0 7E-35 2.4E-39 231.0 5.6 137 8-163 9-171 (253)
29 1oxx_K GLCV, glucose, ABC tran 100.0 4.7E-35 1.6E-39 241.9 4.6 139 8-162 8-182 (353)
30 4a82_A Cystic fibrosis transme 100.0 6.4E-34 2.2E-38 247.8 11.9 145 8-162 344-519 (578)
31 1g29_1 MALK, maltose transport 100.0 3.2E-34 1.1E-38 238.4 8.6 137 8-162 8-181 (372)
32 4f4c_A Multidrug resistance pr 100.0 6.1E-34 2.1E-38 266.6 11.4 147 7-162 1080-1259(1321)
33 2d2e_A SUFC protein; ABC-ATPas 100.0 6.2E-34 2.1E-38 225.0 9.5 141 8-163 8-186 (250)
34 2zu0_C Probable ATP-dependent 100.0 1.6E-33 5.6E-38 224.6 11.0 142 8-163 25-207 (267)
35 2onk_A Molybdate/tungstate ABC 100.0 4.2E-34 1.4E-38 225.0 6.5 137 8-163 6-169 (240)
36 2yl4_A ATP-binding cassette SU 100.0 2.8E-33 9.6E-38 244.4 12.3 146 8-162 346-525 (595)
37 3qf4_B Uncharacterized ABC tra 100.0 2.3E-33 8E-38 245.2 11.7 144 8-162 359-533 (598)
38 4f4c_A Multidrug resistance pr 100.0 2.7E-33 9.2E-38 262.3 12.9 148 8-162 420-596 (1321)
39 2cbz_A Multidrug resistance-as 100.0 1.9E-33 6.6E-38 220.6 9.6 144 8-163 8-170 (237)
40 3b60_A Lipid A export ATP-bind 100.0 6E-33 2E-37 241.8 13.6 145 8-162 346-522 (582)
41 3b5x_A Lipid A export ATP-bind 100.0 6.8E-33 2.3E-37 241.5 13.1 147 8-162 346-522 (582)
42 2qi9_C Vitamin B12 import ATP- 100.0 5.4E-33 1.8E-37 219.8 11.1 131 20-163 14-176 (249)
43 2pze_A Cystic fibrosis transme 100.0 2.9E-32 1E-36 212.9 12.6 141 8-162 11-172 (229)
44 2pjz_A Hypothetical protein ST 100.0 6.9E-33 2.3E-37 220.8 6.1 142 8-163 6-171 (263)
45 3g5u_A MCG1178, multidrug resi 100.0 8.3E-32 2.8E-36 251.7 12.2 146 8-162 392-568 (1284)
46 3g5u_A MCG1178, multidrug resi 100.0 9E-31 3.1E-35 244.7 12.1 146 8-162 1035-1213(1284)
47 2bbs_A Cystic fibrosis transme 100.0 7.9E-30 2.7E-34 205.7 9.6 131 19-162 51-201 (290)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 4.5E-29 1.6E-33 215.9 14.0 143 7-163 25-201 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 6.2E-29 2.1E-33 217.7 12.6 143 7-163 95-271 (607)
50 3j16_B RLI1P; ribosome recycli 100.0 1.3E-28 4.3E-33 215.7 9.0 140 8-162 351-509 (608)
51 3j16_B RLI1P; ribosome recycli 99.9 1.7E-27 5.9E-32 208.5 13.3 142 7-162 81-263 (608)
52 3ozx_A RNAse L inhibitor; ATP 99.9 3.1E-28 1E-32 210.7 8.3 126 21-162 283-427 (538)
53 3bk7_A ABC transporter ATP-bin 99.9 6.3E-28 2.2E-32 211.3 9.7 134 8-162 362-513 (607)
54 3ux8_A Excinuclease ABC, A sub 99.9 5.6E-28 1.9E-32 213.4 8.8 50 110-163 196-247 (670)
55 1yqt_A RNAse L inhibitor; ATP- 99.9 4.2E-28 1.4E-32 209.9 7.3 125 21-162 301-443 (538)
56 3ozx_A RNAse L inhibitor; ATP 99.9 9.6E-27 3.3E-31 201.4 12.1 141 8-162 4-180 (538)
57 2iw3_A Elongation factor 3A; a 99.9 4.6E-27 1.6E-31 213.9 7.5 137 8-163 440-591 (986)
58 2iw3_A Elongation factor 3A; a 99.9 1.7E-26 5.7E-31 210.2 9.2 49 110-162 895-943 (986)
59 3ux8_A Excinuclease ABC, A sub 99.9 2.6E-26 9E-31 202.7 8.2 54 109-163 536-589 (670)
60 4gp7_A Metallophosphoesterase; 99.9 3.3E-25 1.1E-29 165.1 2.5 115 24-156 1-119 (171)
61 3pih_A Uvrabc system protein A 99.9 3.9E-23 1.3E-27 187.5 10.2 54 109-163 798-851 (916)
62 2r6f_A Excinuclease ABC subuni 99.9 8.3E-23 2.8E-27 185.3 7.0 54 109-163 838-891 (972)
63 4aby_A DNA repair protein RECN 99.9 1.2E-22 4.1E-27 169.2 6.0 43 117-163 296-340 (415)
64 2ygr_A Uvrabc system protein A 99.9 1.4E-22 4.9E-27 184.2 6.6 54 109-163 856-909 (993)
65 2vf7_A UVRA2, excinuclease ABC 99.9 1.5E-22 5E-27 182.4 3.4 53 109-162 723-775 (842)
66 2npi_A Protein CLP1; CLP1-PCF1 99.8 2E-23 6.9E-28 177.6 -2.2 123 23-161 129-282 (460)
67 1tq4_A IIGP1, interferon-induc 99.8 2.4E-23 8.2E-28 175.0 -4.4 132 20-162 37-208 (413)
68 1e69_A Chromosome segregation 99.8 6.7E-21 2.3E-25 154.8 10.0 54 109-162 212-265 (322)
69 1ye8_A Protein THEP1, hypothet 99.8 5.5E-22 1.9E-26 149.2 3.3 111 35-162 2-125 (178)
70 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 3.4E-21 1.2E-25 159.4 8.0 52 111-162 274-327 (365)
71 3b85_A Phosphate starvation-in 99.8 1.5E-22 5.3E-27 155.8 -5.4 120 19-161 13-141 (208)
72 2v9p_A Replication protein E1; 99.8 5.6E-22 1.9E-26 160.8 -6.4 118 7-160 105-233 (305)
73 3qkt_A DNA double-strand break 99.8 1.5E-18 5E-23 142.0 8.6 49 110-162 242-296 (339)
74 1z6g_A Guanylate kinase; struc 99.7 4.1E-21 1.4E-25 148.2 -8.9 127 19-161 10-168 (218)
75 3thx_B DNA mismatch repair pro 99.7 6.9E-18 2.4E-22 153.3 6.2 115 18-160 659-774 (918)
76 3b9q_A Chloroplast SRP recepto 99.7 6.5E-19 2.2E-23 142.5 -1.7 121 22-158 90-240 (302)
77 2og2_A Putative signal recogni 99.7 3.1E-18 1.1E-22 141.6 -0.5 120 23-158 148-297 (359)
78 3aez_A Pantothenate kinase; tr 99.6 2.5E-18 8.7E-23 139.6 -3.6 105 30-153 87-209 (312)
79 2pt7_A CAG-ALFA; ATPase, prote 99.6 3.7E-18 1.3E-22 139.5 -2.9 92 21-149 160-251 (330)
80 3kta_B Chromosome segregation 99.6 2.5E-16 8.5E-21 118.0 5.7 66 97-162 45-110 (173)
81 2jeo_A Uridine-cytidine kinase 99.6 9.7E-18 3.3E-22 131.0 -2.6 119 16-154 9-149 (245)
82 2o8b_B DNA mismatch repair pro 99.6 2.8E-16 9.6E-21 144.3 5.8 116 9-156 761-886 (1022)
83 3thx_A DNA mismatch repair pro 99.6 2.6E-16 8.9E-21 143.3 4.7 113 19-159 649-762 (934)
84 3sop_A Neuronal-specific septi 99.6 3E-18 1E-22 136.5 -7.4 112 35-159 4-134 (270)
85 1tf7_A KAIC; homohexamer, hexa 99.6 9.4E-16 3.2E-20 131.9 5.9 117 26-162 275-399 (525)
86 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 2.2E-15 7.4E-20 110.2 4.9 50 109-162 50-105 (148)
87 1pui_A ENGB, probable GTP-bind 99.5 8.1E-16 2.8E-20 115.9 1.9 138 8-162 8-192 (210)
88 1cr0_A DNA primase/helicase; R 99.5 4.1E-15 1.4E-19 118.7 5.5 124 19-151 22-160 (296)
89 1tf7_A KAIC; homohexamer, hexa 99.5 4E-16 1.4E-20 134.2 -3.5 128 12-162 20-167 (525)
90 2dpy_A FLII, flagellum-specifi 99.5 8.4E-16 2.9E-20 130.0 -2.2 136 6-162 134-290 (438)
91 1ewq_A DNA mismatch repair pro 99.5 9.1E-15 3.1E-19 130.9 4.0 114 18-161 565-682 (765)
92 1nlf_A Regulatory protein REPA 99.5 1E-13 3.4E-18 109.9 9.0 115 28-156 26-153 (279)
93 1znw_A Guanylate kinase, GMP k 99.5 6.9E-17 2.4E-21 123.0 -9.7 38 18-60 8-45 (207)
94 2obl_A ESCN; ATPase, hydrolase 99.5 3.4E-15 1.2E-19 122.8 -0.8 137 6-162 48-203 (347)
95 3asz_A Uridine kinase; cytidin 99.5 1.5E-16 5E-21 120.8 -8.4 117 30-161 3-141 (211)
96 1wb9_A DNA mismatch repair pro 99.5 6.4E-14 2.2E-18 126.0 6.5 114 18-159 594-707 (800)
97 2eyu_A Twitching motility prot 99.4 3E-14 1E-18 112.8 1.5 98 20-160 15-117 (261)
98 2w0m_A SSO2452; RECA, SSPF, un 99.4 2.5E-13 8.5E-18 103.2 6.2 128 19-162 9-149 (235)
99 3pih_A Uvrabc system protein A 99.4 2.1E-13 7.1E-18 124.0 6.1 50 110-163 458-509 (916)
100 2i3b_A HCR-ntpase, human cance 99.4 4.8E-15 1.7E-19 112.3 -5.5 115 33-162 1-131 (189)
101 2qnr_A Septin-2, protein NEDD5 99.4 3.4E-15 1.2E-19 120.4 -7.1 124 7-157 2-147 (301)
102 2ehv_A Hypothetical protein PH 99.4 1.6E-13 5.6E-18 105.7 2.6 34 20-55 17-51 (251)
103 1w1w_A Structural maintenance 99.3 1.3E-12 4.3E-17 109.7 6.0 55 108-162 325-379 (430)
104 2ygr_A Uvrabc system protein A 99.3 1.2E-12 4E-17 119.4 5.9 49 110-162 515-565 (993)
105 2r6f_A Excinuclease ABC subuni 99.3 1.3E-12 4.3E-17 119.0 5.8 49 110-162 498-548 (972)
106 2vf7_A UVRA2, excinuclease ABC 99.3 1.7E-12 5.8E-17 117.2 5.2 49 110-162 373-423 (842)
107 2qag_C Septin-7; cell cycle, c 99.3 9.9E-13 3.4E-17 110.6 2.0 120 8-156 16-158 (418)
108 2cvh_A DNA repair and recombin 99.3 1.9E-12 6.6E-17 97.9 3.1 106 19-154 6-121 (220)
109 1odf_A YGR205W, hypothetical 3 99.3 2.8E-13 9.5E-18 108.8 -1.7 40 111-154 129-168 (290)
110 3jvv_A Twitching mobility prot 99.2 2.1E-12 7.2E-17 106.5 2.7 50 7-60 92-148 (356)
111 4ad8_A DNA repair protein RECN 99.2 4.8E-12 1.6E-16 108.6 4.9 47 112-162 392-441 (517)
112 4a74_A DNA repair and recombin 99.2 4.6E-12 1.6E-16 96.4 4.2 27 28-57 21-47 (231)
113 2f1r_A Molybdopterin-guanine d 99.2 4.8E-14 1.6E-18 105.2 -7.0 97 34-141 3-124 (171)
114 1rj9_A FTSY, signal recognitio 99.2 9.7E-13 3.3E-17 106.3 0.1 114 32-156 101-239 (304)
115 1lw7_A Transcriptional regulat 99.2 3.1E-13 1.1E-17 111.2 -3.0 125 22-162 158-310 (365)
116 2o5v_A DNA replication and rep 99.2 3.6E-12 1.2E-16 105.3 2.9 52 111-162 259-316 (359)
117 1pzn_A RAD51, DNA repair and r 99.2 4.3E-12 1.5E-16 104.2 3.2 114 19-154 117-247 (349)
118 2qag_B Septin-6, protein NEDD5 99.1 1E-11 3.4E-16 104.7 2.5 138 10-161 22-199 (427)
119 2qm8_A GTPase/ATPase; G protei 99.1 6.9E-12 2.4E-16 102.5 -0.7 47 8-60 34-80 (337)
120 3auy_A DNA double-strand break 99.1 6.4E-11 2.2E-15 97.6 4.8 47 112-162 276-329 (371)
121 1zp6_A Hypothetical protein AT 99.1 1.4E-11 4.7E-16 91.6 0.6 38 112-161 105-142 (191)
122 2gza_A Type IV secretion syste 99.1 4.4E-12 1.5E-16 104.5 -2.3 37 22-61 165-201 (361)
123 2bbw_A Adenylate kinase 4, AK4 99.1 9.4E-12 3.2E-16 96.7 -0.4 43 110-162 146-192 (246)
124 1udx_A The GTP-binding protein 99.0 2.2E-11 7.4E-16 102.4 -0.1 123 21-156 146-284 (416)
125 2rcn_A Probable GTPase ENGC; Y 99.0 1.9E-10 6.4E-15 95.0 5.0 102 20-132 204-329 (358)
126 1lvg_A Guanylate kinase, GMP k 99.0 5.4E-13 1.8E-17 101.1 -9.8 27 31-59 2-28 (198)
127 3szr_A Interferon-induced GTP- 99.0 2.6E-12 8.9E-17 112.5 -6.9 26 137-162 145-176 (608)
128 1htw_A HI0065; nucleotide-bind 99.0 7.8E-11 2.7E-15 86.6 0.9 46 8-59 12-57 (158)
129 3ec2_A DNA replication protein 99.0 3.9E-10 1.3E-14 83.3 4.7 29 26-56 32-60 (180)
130 2x8a_A Nuclear valosin-contain 98.9 7.9E-13 2.7E-17 105.1 -11.9 126 19-161 33-188 (274)
131 1vma_A Cell division protein F 98.9 2.7E-10 9.3E-15 92.1 2.4 96 24-149 96-197 (306)
132 2ewv_A Twitching motility prot 98.9 6.7E-10 2.3E-14 91.9 3.1 30 30-61 133-162 (372)
133 3vaa_A Shikimate kinase, SK; s 98.8 1.1E-09 3.6E-14 82.4 3.1 44 10-55 3-46 (199)
134 2yhs_A FTSY, cell division pro 98.8 1.4E-10 4.9E-15 99.2 -2.8 37 22-61 283-319 (503)
135 1n0w_A DNA repair protein RAD5 98.8 1.1E-08 3.8E-13 78.1 6.6 26 30-56 21-46 (243)
136 1ls1_A Signal recognition part 98.8 3.8E-08 1.3E-12 78.9 9.6 109 23-160 91-203 (295)
137 3lnc_A Guanylate kinase, GMP k 98.7 2.6E-09 8.9E-14 82.0 2.1 38 19-59 14-52 (231)
138 3lda_A DNA repair protein RAD5 98.7 1.2E-08 4E-13 85.3 5.8 25 28-54 174-198 (400)
139 2kjq_A DNAA-related protein; s 98.7 1.9E-09 6.6E-14 78.2 0.8 26 32-59 35-60 (149)
140 1p9r_A General secretion pathw 98.7 2.3E-10 7.9E-15 96.1 -5.2 29 30-60 164-192 (418)
141 3euj_A Chromosome partition pr 98.7 6.2E-09 2.1E-13 88.9 3.4 39 19-61 17-55 (483)
142 3e70_C DPA, signal recognition 98.6 3.5E-09 1.2E-13 86.3 -0.1 30 30-61 126-155 (328)
143 3tr0_A Guanylate kinase, GMP k 98.6 1.6E-08 5.5E-13 75.5 3.2 31 26-59 1-31 (205)
144 1sxj_E Activator 1 40 kDa subu 98.6 5.1E-08 1.7E-12 78.7 6.3 25 137-162 133-157 (354)
145 1nij_A Hypothetical protein YJ 98.6 3.2E-10 1.1E-14 91.7 -8.3 26 116-147 141-166 (318)
146 2dr3_A UPF0273 protein PH0284; 98.5 5.8E-08 2E-12 74.1 4.5 38 19-58 9-47 (247)
147 3nwj_A ATSK2; P loop, shikimat 98.5 6.4E-09 2.2E-13 81.7 -1.1 43 8-54 22-68 (250)
148 3k1j_A LON protease, ATP-depen 98.4 7.8E-09 2.7E-13 90.2 -2.8 44 114-162 181-224 (604)
149 1s96_A Guanylate kinase, GMP k 98.4 9.9E-08 3.4E-12 73.4 3.2 29 30-60 13-41 (219)
150 2r6a_A DNAB helicase, replicat 98.4 3.5E-07 1.2E-11 77.1 6.7 124 19-153 190-328 (454)
151 3kta_A Chromosome segregation 98.4 1.8E-07 6.1E-12 68.8 4.0 34 20-56 13-48 (182)
152 2px0_A Flagellar biosynthesis 98.4 8.4E-07 2.9E-11 71.1 7.3 26 31-57 103-128 (296)
153 1sq5_A Pantothenate kinase; P- 98.4 4.5E-08 1.5E-12 78.7 -0.4 38 20-60 49-105 (308)
154 1oix_A RAS-related protein RAB 98.3 3.9E-07 1.3E-11 67.6 4.5 33 124-162 153-185 (191)
155 2zr9_A Protein RECA, recombina 98.3 1.7E-06 5.8E-11 70.9 8.7 28 30-58 58-85 (349)
156 3c8u_A Fructokinase; YP_612366 98.3 1.3E-07 4.5E-12 71.4 1.9 29 30-60 19-47 (208)
157 2j41_A Guanylate kinase; GMP, 98.3 3E-07 1E-11 68.5 3.4 30 27-59 1-30 (207)
158 4a1f_A DNAB helicase, replicat 98.3 1.1E-07 3.8E-12 77.8 0.8 107 18-152 32-141 (338)
159 3uie_A Adenylyl-sulfate kinase 98.3 1.7E-07 5.8E-12 70.3 1.1 37 18-56 11-47 (200)
160 3a00_A Guanylate kinase, GMP k 98.2 4.3E-07 1.5E-11 67.4 2.8 26 33-60 1-26 (186)
161 1kgd_A CASK, peripheral plasma 98.2 6.9E-07 2.3E-11 66.0 3.2 27 31-59 3-29 (180)
162 2oap_1 GSPE-2, type II secreti 98.2 2.1E-07 7.2E-12 79.9 0.4 39 20-61 248-286 (511)
163 2ce7_A Cell division protein F 98.2 1.8E-06 6.1E-11 73.6 5.9 80 21-149 40-119 (476)
164 2f9l_A RAB11B, member RAS onco 98.2 5.3E-07 1.8E-11 67.0 2.2 32 125-162 130-161 (199)
165 2o5v_A DNA replication and rep 98.1 1.1E-06 3.9E-11 72.3 3.6 32 19-53 14-45 (359)
166 1svm_A Large T antigen; AAA+ f 98.1 7.1E-07 2.4E-11 74.0 1.6 36 20-58 157-192 (377)
167 4eun_A Thermoresistant glucoki 98.1 1.7E-06 5.7E-11 64.8 3.1 27 26-54 23-49 (200)
168 3tau_A Guanylate kinase, GMP k 98.1 2.1E-06 7.2E-11 64.8 3.4 26 31-57 6-31 (208)
169 3bh0_A DNAB-like replicative h 98.1 4.6E-07 1.6E-11 73.0 -0.3 107 19-151 55-164 (315)
170 2xau_A PRE-mRNA-splicing facto 98.0 7.5E-07 2.6E-11 79.9 0.2 44 111-158 185-229 (773)
171 1u0l_A Probable GTPase ENGC; p 98.0 1.6E-06 5.4E-11 69.4 1.8 32 27-61 164-195 (301)
172 1t9h_A YLOQ, probable GTPase E 98.0 1.3E-06 4.6E-11 70.4 1.1 32 27-61 168-199 (307)
173 4e22_A Cytidylate kinase; P-lo 98.0 3E-06 1E-10 66.0 3.0 36 23-61 18-56 (252)
174 2e87_A Hypothetical protein PH 98.0 3.5E-06 1.2E-10 68.8 3.4 49 108-161 223-272 (357)
175 2bdt_A BH3686; alpha-beta prot 98.0 2.9E-06 9.9E-11 62.6 2.4 21 33-54 2-22 (189)
176 3ice_A Transcription terminati 97.9 4.1E-06 1.4E-10 69.9 3.2 42 7-52 137-192 (422)
177 1qhl_A Protein (cell division 97.9 5.1E-07 1.7E-11 69.9 -2.3 32 26-61 22-53 (227)
178 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 7.1E-06 2.4E-10 59.1 3.8 34 22-58 14-47 (149)
179 1zu4_A FTSY; GTPase, signal re 97.9 4.1E-06 1.4E-10 67.8 2.8 35 22-58 95-129 (320)
180 1ixz_A ATP-dependent metallopr 97.9 2.5E-06 8.5E-11 65.9 1.1 33 20-56 39-71 (254)
181 3ney_A 55 kDa erythrocyte memb 97.9 6.1E-06 2.1E-10 62.5 3.2 28 26-55 13-40 (197)
182 1knq_A Gluconate kinase; ALFA/ 97.9 6.1E-06 2.1E-10 60.0 2.8 23 31-54 6-28 (175)
183 2vp4_A Deoxynucleoside kinase; 97.9 3.8E-06 1.3E-10 64.3 1.8 32 24-58 12-43 (230)
184 1iy2_A ATP-dependent metallopr 97.9 3.1E-06 1E-10 66.5 1.2 33 20-56 63-95 (278)
185 2yv5_A YJEQ protein; hydrolase 97.8 6.5E-06 2.2E-10 65.9 2.5 31 27-61 160-190 (302)
186 2qtf_A Protein HFLX, GTP-bindi 97.8 2.2E-05 7.4E-10 64.6 5.5 47 112-162 300-347 (364)
187 1w1w_A Structural maintenance 97.8 1.2E-05 4E-10 67.2 3.8 33 26-61 20-52 (430)
188 2qt1_A Nicotinamide riboside k 97.8 1.1E-05 3.6E-10 60.4 3.0 31 23-55 12-42 (207)
189 1rz3_A Hypothetical protein rb 97.8 1.1E-05 3.7E-10 60.4 2.9 25 30-55 19-43 (201)
190 4eaq_A DTMP kinase, thymidylat 97.8 1.1E-05 3.9E-10 62.0 3.0 36 20-57 11-49 (229)
191 1kag_A SKI, shikimate kinase I 97.8 1.1E-05 3.8E-10 58.3 2.7 25 32-58 3-27 (173)
192 3tqc_A Pantothenate kinase; bi 97.8 4.1E-06 1.4E-10 68.0 0.3 38 19-59 73-116 (321)
193 1y63_A LMAJ004144AAA protein; 97.7 1.4E-05 4.9E-10 58.9 3.0 30 24-55 2-31 (184)
194 1in4_A RUVB, holliday junction 97.7 1.7E-06 5.8E-11 70.0 -2.4 36 19-56 31-73 (334)
195 2dy1_A Elongation factor G; tr 97.7 3.1E-05 1.1E-09 68.3 5.4 28 26-55 3-30 (665)
196 3b9p_A CG5977-PA, isoform A; A 97.7 8.9E-05 3E-09 58.2 7.1 32 118-153 97-128 (297)
197 2qor_A Guanylate kinase; phosp 97.7 2.1E-05 7E-10 58.9 3.2 28 30-58 9-36 (204)
198 1fnn_A CDC6P, cell division co 97.7 0.00042 1.4E-08 55.8 10.8 25 137-162 124-148 (389)
199 4ad8_A DNA repair protein RECN 97.6 1.5E-05 5.1E-10 68.2 2.1 32 19-53 48-79 (517)
200 3qks_A DNA double-strand break 97.6 5.7E-05 1.9E-09 56.9 5.1 35 22-59 14-48 (203)
201 3cr8_A Sulfate adenylyltranfer 97.6 2.4E-05 8.2E-10 67.8 2.3 26 28-55 365-390 (552)
202 2pez_A Bifunctional 3'-phospho 97.5 4.1E-05 1.4E-09 55.8 2.9 24 31-55 3-26 (179)
203 1f6b_A SAR1; gtpases, N-termin 97.5 9.1E-06 3.1E-10 60.4 -0.7 41 10-55 6-46 (198)
204 2p67_A LAO/AO transport system 97.5 1.9E-05 6.6E-10 64.1 1.1 35 19-55 43-77 (341)
205 1cke_A CK, MSSA, protein (cyti 97.5 4.8E-05 1.7E-09 57.3 3.2 21 33-54 5-25 (227)
206 3t34_A Dynamin-related protein 97.4 6.8E-05 2.3E-09 61.0 3.4 41 11-56 16-56 (360)
207 2q6t_A DNAB replication FORK h 97.4 0.00018 6.3E-09 60.3 5.8 37 19-57 187-223 (444)
208 1jjv_A Dephospho-COA kinase; P 97.4 7.9E-05 2.7E-09 55.5 2.7 22 35-58 4-25 (206)
209 1qhx_A CPT, protein (chloramph 97.4 0.00013 4.3E-09 52.9 3.5 23 33-56 3-25 (178)
210 3cm0_A Adenylate kinase; ATP-b 97.3 9E-05 3.1E-09 54.1 2.5 24 31-55 2-25 (186)
211 2if2_A Dephospho-COA kinase; a 97.3 0.00011 3.6E-09 54.6 2.9 20 35-55 3-22 (204)
212 1m7g_A Adenylylsulfate kinase; 97.3 0.00011 3.7E-09 55.2 2.7 27 27-55 20-46 (211)
213 2yvu_A Probable adenylyl-sulfa 97.3 0.00013 4.3E-09 53.5 3.0 25 30-55 10-34 (186)
214 2ga8_A Hypothetical 39.9 kDa p 97.3 4.7E-05 1.6E-09 62.7 0.6 34 20-55 10-45 (359)
215 3t61_A Gluconokinase; PSI-biol 97.3 0.00012 4.2E-09 54.3 2.9 22 33-55 18-39 (202)
216 3hr8_A Protein RECA; alpha and 97.3 0.00012 4.1E-09 60.1 3.0 27 30-57 58-84 (356)
217 3m6a_A ATP-dependent protease 97.3 6.8E-05 2.3E-09 64.6 1.6 36 20-58 97-132 (543)
218 1m2o_B GTP-binding protein SAR 97.3 0.00014 4.9E-09 53.3 3.1 34 20-56 12-45 (190)
219 3kb2_A SPBC2 prophage-derived 97.3 0.00014 4.9E-09 52.0 3.0 20 35-55 3-22 (173)
220 2p5t_B PEZT; postsegregational 97.2 0.00011 3.7E-09 57.0 2.2 33 21-56 22-54 (253)
221 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00012 4E-09 62.7 2.4 34 20-57 54-87 (499)
222 3lw7_A Adenylate kinase relate 97.2 0.00016 5.4E-09 51.5 2.7 19 35-54 3-21 (179)
223 1ni3_A YCHF GTPase, YCHF GTP-b 97.2 0.00016 5.4E-09 60.1 3.1 26 30-57 17-42 (392)
224 1sxj_C Activator 1 40 kDa subu 97.2 3.6E-05 1.2E-09 62.0 -1.0 38 19-58 31-70 (340)
225 2rhm_A Putative kinase; P-loop 97.2 0.00018 6.2E-09 52.5 2.9 25 30-55 2-26 (193)
226 1kht_A Adenylate kinase; phosp 97.2 0.0002 6.9E-09 52.1 3.0 22 33-55 3-24 (192)
227 2gj8_A MNME, tRNA modification 97.2 0.0002 6.8E-09 51.8 2.9 25 31-56 2-26 (172)
228 1j8m_F SRP54, signal recogniti 97.2 0.00013 4.5E-09 58.3 1.9 33 23-58 89-122 (297)
229 2ze6_A Isopentenyl transferase 97.1 0.00023 7.9E-09 55.3 2.8 21 35-56 3-23 (253)
230 3trf_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 51.2 3.2 24 32-56 4-27 (185)
231 1np6_A Molybdopterin-guanine d 97.1 0.00027 9.2E-09 52.2 2.8 24 34-58 7-30 (174)
232 1ega_A Protein (GTP-binding pr 97.1 0.00018 6.1E-09 57.4 2.0 25 32-57 7-31 (301)
233 3iij_A Coilin-interacting nucl 97.1 0.00023 7.8E-09 51.8 2.4 25 30-55 8-32 (180)
234 1ex7_A Guanylate kinase; subst 97.1 0.00027 9.1E-09 52.9 2.7 22 35-57 3-24 (186)
235 1q3t_A Cytidylate kinase; nucl 97.1 0.00034 1.2E-08 53.4 3.4 25 30-55 13-37 (236)
236 1ly1_A Polynucleotide kinase; 97.1 0.0003 1E-08 50.6 2.9 22 34-56 3-24 (181)
237 1gvn_B Zeta; postsegregational 97.1 0.00027 9.2E-09 56.0 2.8 26 30-56 30-55 (287)
238 1lv7_A FTSH; alpha/beta domain 97.0 0.00025 8.7E-09 54.5 2.6 33 21-57 36-68 (257)
239 2v54_A DTMP kinase, thymidylat 97.0 0.00048 1.7E-08 50.7 3.5 25 31-56 2-26 (204)
240 2plr_A DTMP kinase, probable t 97.0 0.00041 1.4E-08 51.2 3.1 23 32-55 3-25 (213)
241 2c95_A Adenylate kinase 1; tra 97.0 0.00047 1.6E-08 50.4 3.3 24 31-55 7-30 (196)
242 2www_A Methylmalonic aciduria 97.0 0.0004 1.4E-08 56.5 3.2 24 32-56 73-96 (349)
243 1v5w_A DMC1, meiotic recombina 97.0 0.00043 1.5E-08 56.2 3.3 28 28-57 118-145 (343)
244 3auy_A DNA double-strand break 97.0 0.00038 1.3E-08 57.0 2.9 31 21-54 15-45 (371)
245 1via_A Shikimate kinase; struc 96.9 0.00036 1.2E-08 50.6 2.5 20 35-55 6-25 (175)
246 2jaq_A Deoxyguanosine kinase; 96.9 0.00042 1.5E-08 50.8 2.9 21 35-56 2-22 (205)
247 3r20_A Cytidylate kinase; stru 96.9 0.00042 1.4E-08 53.6 2.9 21 34-55 10-30 (233)
248 2wji_A Ferrous iron transport 96.9 0.00044 1.5E-08 49.4 2.8 21 35-56 5-25 (165)
249 1tev_A UMP-CMP kinase; ploop, 96.9 0.00045 1.5E-08 50.2 2.9 22 33-55 3-24 (196)
250 2wwf_A Thymidilate kinase, put 96.9 0.00052 1.8E-08 50.9 3.3 25 30-55 7-31 (212)
251 1gtv_A TMK, thymidylate kinase 96.9 0.00021 7.3E-09 53.1 1.0 20 35-55 2-21 (214)
252 1nn5_A Similar to deoxythymidy 96.9 0.00059 2E-08 50.6 3.4 25 30-55 6-30 (215)
253 2zts_A Putative uncharacterize 96.9 0.00059 2E-08 51.6 3.4 35 19-55 16-51 (251)
254 2bwj_A Adenylate kinase 5; pho 96.9 0.00021 7.1E-09 52.5 0.8 25 30-55 9-33 (199)
255 1vht_A Dephospho-COA kinase; s 96.9 0.00054 1.8E-08 51.4 3.0 22 32-54 3-24 (218)
256 1nks_A Adenylate kinase; therm 96.9 0.00052 1.8E-08 49.8 2.9 20 35-55 3-22 (194)
257 1ko7_A HPR kinase/phosphatase; 96.9 0.00071 2.4E-08 54.7 3.7 34 20-56 133-166 (314)
258 2ffh_A Protein (FFH); SRP54, s 96.9 0.0005 1.7E-08 57.7 2.9 32 23-58 91-122 (425)
259 2z43_A DNA repair and recombin 96.8 0.00062 2.1E-08 54.7 3.3 28 28-57 103-130 (324)
260 1xjc_A MOBB protein homolog; s 96.8 0.00055 1.9E-08 50.5 2.8 24 34-58 5-28 (169)
261 1ypw_A Transitional endoplasmi 96.8 0.0006 2.1E-08 61.4 3.4 29 27-57 233-261 (806)
262 2zej_A Dardarin, leucine-rich 96.8 0.00056 1.9E-08 49.7 2.5 20 35-55 4-23 (184)
263 1uf9_A TT1252 protein; P-loop, 96.8 0.00071 2.4E-08 49.7 3.1 21 33-54 8-28 (203)
264 2wjg_A FEOB, ferrous iron tran 96.8 0.00069 2.4E-08 48.9 2.9 21 35-56 9-29 (188)
265 2vli_A Antibiotic resistance p 96.8 0.00053 1.8E-08 49.6 2.3 24 31-55 3-26 (183)
266 1aky_A Adenylate kinase; ATP:A 96.8 0.0008 2.7E-08 50.5 3.4 23 32-55 3-25 (220)
267 2qmh_A HPR kinase/phosphorylas 96.8 0.00067 2.3E-08 51.6 2.7 38 19-59 22-59 (205)
268 2z0h_A DTMP kinase, thymidylat 96.7 0.00077 2.6E-08 49.3 2.9 21 35-56 2-22 (197)
269 1zd8_A GTP:AMP phosphotransfer 96.7 0.00088 3E-08 50.6 3.2 25 30-55 4-28 (227)
270 1zak_A Adenylate kinase; ATP:A 96.7 0.00086 2.9E-08 50.4 3.1 24 31-55 3-26 (222)
271 2cdn_A Adenylate kinase; phosp 96.7 0.001 3.4E-08 49.2 3.3 24 31-55 18-41 (201)
272 3cf0_A Transitional endoplasmi 96.7 0.00084 2.9E-08 53.2 2.9 29 27-57 44-72 (301)
273 2iyv_A Shikimate kinase, SK; t 96.7 0.00084 2.9E-08 48.8 2.7 21 34-55 3-23 (184)
274 3fb4_A Adenylate kinase; psych 96.7 0.00087 3E-08 50.0 2.7 19 35-54 2-20 (216)
275 3llm_A ATP-dependent RNA helic 96.7 0.00068 2.3E-08 51.7 2.1 21 30-51 73-93 (235)
276 2i1q_A DNA repair and recombin 96.6 0.00096 3.3E-08 53.2 3.0 26 30-56 95-120 (322)
277 4ag6_A VIRB4 ATPase, type IV s 96.6 0.0012 4.2E-08 54.0 3.7 45 8-56 10-57 (392)
278 1e6c_A Shikimate kinase; phosp 96.6 0.00094 3.2E-08 47.8 2.6 21 34-55 3-23 (173)
279 1zuh_A Shikimate kinase; alpha 96.6 0.0011 3.7E-08 47.6 2.9 21 34-55 8-28 (168)
280 3tqf_A HPR(Ser) kinase; transf 96.6 0.001 3.5E-08 49.5 2.8 34 20-56 5-38 (181)
281 1ukz_A Uridylate kinase; trans 96.6 0.0012 3.9E-08 48.8 3.1 23 32-55 14-36 (203)
282 3dl0_A Adenylate kinase; phosp 96.6 0.0011 3.7E-08 49.5 2.9 20 35-55 2-21 (216)
283 1qf9_A UMP/CMP kinase, protein 96.6 0.0012 4E-08 47.9 2.8 22 33-55 6-27 (194)
284 2pbr_A DTMP kinase, thymidylat 96.6 0.0011 3.8E-08 48.2 2.7 21 35-56 2-22 (195)
285 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 3.9E-08 51.3 2.9 23 32-55 3-25 (260)
286 3tlx_A Adenylate kinase 2; str 96.5 0.0014 4.8E-08 50.4 3.2 24 31-55 27-50 (243)
287 2pt5_A Shikimate kinase, SK; a 96.5 0.0012 4.3E-08 47.0 2.7 20 35-55 2-21 (168)
288 2orw_A Thymidine kinase; TMTK, 96.5 0.0015 5.3E-08 48.3 3.3 23 32-55 2-24 (184)
289 3ake_A Cytidylate kinase; CMP 96.5 0.0014 4.6E-08 48.3 2.9 19 35-54 4-22 (208)
290 1uj2_A Uridine-cytidine kinase 96.5 0.0012 4.2E-08 50.8 2.7 20 34-54 23-42 (252)
291 3kl4_A SRP54, signal recogniti 96.5 0.0012 4.2E-08 55.4 2.8 26 32-58 96-121 (433)
292 3a8t_A Adenylate isopentenyltr 96.5 0.0016 5.4E-08 53.1 3.2 27 32-59 39-65 (339)
293 1u94_A RECA protein, recombina 96.5 0.0016 5.6E-08 53.2 3.4 27 30-57 60-86 (356)
294 3bos_A Putative DNA replicatio 96.5 0.0019 6.4E-08 48.2 3.4 23 32-55 51-73 (242)
295 1a7j_A Phosphoribulokinase; tr 96.4 0.0011 3.6E-08 52.7 1.7 23 32-55 4-26 (290)
296 3d3q_A TRNA delta(2)-isopenten 96.4 0.0017 5.7E-08 53.0 2.9 24 34-58 8-31 (340)
297 3lxx_A GTPase IMAP family memb 96.4 0.0019 6.6E-08 49.0 3.0 21 35-56 31-51 (239)
298 2grj_A Dephospho-COA kinase; T 96.4 0.0018 6.2E-08 48.4 2.7 20 34-54 13-32 (192)
299 2ius_A DNA translocase FTSK; n 96.4 0.0017 5.8E-08 55.7 2.9 33 24-58 159-191 (512)
300 1kao_A RAP2A; GTP-binding prot 96.3 0.0023 7.8E-08 44.7 3.1 23 35-58 5-27 (167)
301 3be4_A Adenylate kinase; malar 96.3 0.0019 6.5E-08 48.5 2.8 23 32-55 4-26 (217)
302 3zvl_A Bifunctional polynucleo 96.3 0.0022 7.5E-08 53.3 3.4 26 30-56 255-280 (416)
303 2xb4_A Adenylate kinase; ATP-b 96.3 0.002 6.9E-08 48.7 2.9 20 35-55 2-21 (223)
304 2qag_A Septin-2, protein NEDD5 96.3 0.0015 5.1E-08 53.4 2.3 28 19-54 30-57 (361)
305 2f6r_A COA synthase, bifunctio 96.3 0.0018 6.2E-08 50.9 2.7 21 33-54 75-95 (281)
306 1z2a_A RAS-related protein RAB 96.3 0.0024 8.3E-08 44.7 3.0 23 35-58 7-29 (168)
307 1ltq_A Polynucleotide kinase; 96.3 0.0021 7.2E-08 50.3 2.9 22 34-56 3-24 (301)
308 2ged_A SR-beta, signal recogni 96.3 0.0024 8.4E-08 46.2 3.1 23 35-58 50-72 (193)
309 2ce2_X GTPase HRAS; signaling 96.3 0.0025 8.5E-08 44.4 3.0 22 35-57 5-26 (166)
310 1jbk_A CLPB protein; beta barr 96.3 0.0028 9.6E-08 45.2 3.3 25 32-57 42-66 (195)
311 2qby_A CDC6 homolog 1, cell di 96.3 0.0023 8E-08 51.0 3.2 25 31-56 43-67 (386)
312 2dyk_A GTP-binding protein; GT 96.3 0.0026 9.1E-08 44.3 3.1 22 35-57 3-24 (161)
313 3exa_A TRNA delta(2)-isopenten 96.3 0.0025 8.5E-08 51.6 3.2 25 33-58 3-27 (322)
314 1e4v_A Adenylate kinase; trans 96.3 0.0023 7.8E-08 47.8 2.8 20 35-55 2-21 (214)
315 3k53_A Ferrous iron transport 96.2 0.0025 8.4E-08 49.6 3.0 22 35-57 5-26 (271)
316 3umf_A Adenylate kinase; rossm 96.2 0.0024 8.2E-08 48.8 2.8 25 30-55 26-50 (217)
317 1u8z_A RAS-related protein RAL 96.2 0.0029 9.8E-08 44.2 3.0 22 35-57 6-27 (168)
318 1ak2_A Adenylate kinase isoenz 96.2 0.0032 1.1E-07 47.8 3.5 24 31-55 14-37 (233)
319 1ky3_A GTP-binding protein YPT 96.2 0.003 1E-07 44.9 3.1 23 35-58 10-32 (182)
320 1ek0_A Protein (GTP-binding pr 96.2 0.003 1E-07 44.3 3.0 23 35-58 5-27 (170)
321 1z08_A RAS-related protein RAB 96.2 0.003 1E-07 44.4 3.0 22 35-57 8-29 (170)
322 3ihw_A Centg3; RAS, centaurin, 96.2 0.003 1E-07 45.9 3.0 23 35-58 22-44 (184)
323 2erx_A GTP-binding protein DI- 96.2 0.0031 1.1E-07 44.2 3.0 22 35-57 5-26 (172)
324 1g16_A RAS-related protein SEC 96.2 0.0031 1.1E-07 44.3 3.0 22 35-57 5-26 (170)
325 1z0j_A RAB-22, RAS-related pro 96.1 0.0033 1.1E-07 44.1 3.1 23 35-58 8-30 (170)
326 1mky_A Probable GTP-binding pr 96.1 0.0026 9E-08 53.0 2.9 21 35-56 182-202 (439)
327 2fn4_A P23, RAS-related protei 96.1 0.0032 1.1E-07 44.6 3.0 22 35-57 11-32 (181)
328 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0033 1.1E-07 44.6 3.1 22 35-57 9-30 (177)
329 2nzj_A GTP-binding protein REM 96.1 0.0031 1.1E-07 44.6 2.9 22 35-57 6-27 (175)
330 1c1y_A RAS-related protein RAP 96.1 0.0034 1.2E-07 43.9 3.0 22 35-57 5-26 (167)
331 1r2q_A RAS-related protein RAB 96.1 0.0034 1.2E-07 44.0 3.0 23 35-58 8-30 (170)
332 3crm_A TRNA delta(2)-isopenten 96.1 0.0029 9.9E-08 51.2 2.9 24 34-58 6-29 (323)
333 2lkc_A Translation initiation 96.1 0.0046 1.6E-07 43.9 3.6 26 31-57 6-31 (178)
334 3pqc_A Probable GTP-binding pr 96.1 0.0032 1.1E-07 45.3 2.7 22 35-57 25-46 (195)
335 1xp8_A RECA protein, recombina 96.1 0.0036 1.2E-07 51.4 3.3 27 30-57 71-97 (366)
336 3q85_A GTP-binding protein REM 96.0 0.0035 1.2E-07 44.1 2.8 20 35-55 4-23 (169)
337 4edh_A DTMP kinase, thymidylat 96.0 0.0033 1.1E-07 47.7 2.8 24 31-55 4-27 (213)
338 2p65_A Hypothetical protein PF 96.0 0.0034 1.2E-07 44.8 2.8 26 32-58 42-67 (187)
339 1svi_A GTP-binding protein YSX 96.0 0.0034 1.1E-07 45.5 2.7 23 34-57 24-46 (195)
340 3lv8_A DTMP kinase, thymidylat 96.0 0.0037 1.3E-07 48.3 3.0 24 31-55 25-48 (236)
341 1upt_A ARL1, ADP-ribosylation 96.0 0.004 1.4E-07 43.8 3.0 22 35-57 9-30 (171)
342 1fzq_A ADP-ribosylation factor 96.0 0.0028 9.6E-08 45.8 2.2 22 35-57 18-39 (181)
343 2w58_A DNAI, primosome compone 96.0 0.0038 1.3E-07 45.9 3.0 22 34-56 55-76 (202)
344 3v9p_A DTMP kinase, thymidylat 96.0 0.0032 1.1E-07 48.4 2.6 24 30-54 22-45 (227)
345 2y8e_A RAB-protein 6, GH09086P 96.0 0.0041 1.4E-07 44.0 3.0 22 35-57 16-37 (179)
346 2hxs_A RAB-26, RAS-related pro 96.0 0.0044 1.5E-07 44.0 3.2 22 35-57 8-29 (178)
347 3bc1_A RAS-related protein RAB 96.0 0.0042 1.4E-07 44.5 3.0 23 35-58 13-35 (195)
348 2wsm_A Hydrogenase expression/ 96.0 0.0039 1.3E-07 46.3 2.9 23 34-57 31-53 (221)
349 3clv_A RAB5 protein, putative; 96.0 0.0043 1.5E-07 44.7 3.1 22 35-57 9-30 (208)
350 1r8s_A ADP-ribosylation factor 96.0 0.004 1.4E-07 43.6 2.8 22 35-57 2-23 (164)
351 3q72_A GTP-binding protein RAD 96.0 0.0038 1.3E-07 43.8 2.7 20 35-55 4-23 (166)
352 3h4m_A Proteasome-activating n 96.0 0.0048 1.7E-07 47.7 3.5 27 31-58 49-75 (285)
353 3foz_A TRNA delta(2)-isopenten 96.0 0.0041 1.4E-07 50.2 3.1 25 33-58 10-34 (316)
354 3tw8_B RAS-related protein RAB 96.0 0.0032 1.1E-07 44.6 2.3 21 35-56 11-31 (181)
355 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0044 1.5E-07 44.3 3.1 23 35-58 6-28 (189)
356 2cxx_A Probable GTP-binding pr 95.9 0.0036 1.2E-07 44.9 2.6 22 35-57 3-24 (190)
357 4tmk_A Protein (thymidylate ki 95.9 0.0044 1.5E-07 47.0 3.1 23 32-55 2-24 (213)
358 3con_A GTPase NRAS; structural 95.9 0.0045 1.5E-07 44.6 3.0 22 35-57 23-44 (190)
359 2ohf_A Protein OLA1, GTP-bindi 95.9 0.004 1.4E-07 51.7 3.1 27 30-58 19-45 (396)
360 4fcw_A Chaperone protein CLPB; 95.9 0.0041 1.4E-07 48.6 3.0 24 34-58 48-71 (311)
361 3sr0_A Adenylate kinase; phosp 95.9 0.0042 1.4E-07 46.9 2.9 20 35-55 2-21 (206)
362 2a9k_A RAS-related protein RAL 95.9 0.0047 1.6E-07 44.0 3.0 22 35-57 20-41 (187)
363 1moz_A ARL1, ADP-ribosylation 95.9 0.0022 7.6E-08 45.9 1.3 22 33-55 18-39 (183)
364 2oil_A CATX-8, RAS-related pro 95.9 0.0047 1.6E-07 44.8 3.0 22 35-57 27-48 (193)
365 2g6b_A RAS-related protein RAB 95.9 0.0048 1.6E-07 43.9 3.0 23 35-58 12-34 (180)
366 3io5_A Recombination and repai 95.9 0.004 1.4E-07 50.5 2.8 26 30-57 26-51 (333)
367 3tmk_A Thymidylate kinase; pho 95.9 0.0051 1.7E-07 46.9 3.2 27 31-58 3-29 (216)
368 1nrj_B SR-beta, signal recogni 95.9 0.0052 1.8E-07 45.4 3.3 23 35-58 14-36 (218)
369 2hf9_A Probable hydrogenase ni 95.9 0.004 1.4E-07 46.4 2.7 24 34-58 39-62 (226)
370 3t5g_A GTP-binding protein RHE 95.9 0.0049 1.7E-07 44.0 3.0 23 35-58 8-30 (181)
371 3bgw_A DNAB-like replicative h 95.9 0.0051 1.7E-07 51.7 3.5 36 19-56 184-219 (444)
372 1z0f_A RAB14, member RAS oncog 95.9 0.0051 1.8E-07 43.5 3.0 23 35-58 17-39 (179)
373 2efe_B Small GTP-binding prote 95.9 0.0052 1.8E-07 43.7 3.0 22 35-57 14-35 (181)
374 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0051 1.7E-07 44.4 3.0 22 35-57 9-30 (184)
375 2bme_A RAB4A, RAS-related prot 95.8 0.0051 1.8E-07 44.0 3.0 22 35-57 12-33 (186)
376 1l8q_A Chromosomal replication 95.8 0.0046 1.6E-07 49.0 2.9 25 33-58 37-61 (324)
377 3kkq_A RAS-related protein M-R 95.8 0.0054 1.8E-07 43.9 3.0 22 35-57 20-41 (183)
378 2b8t_A Thymidine kinase; deoxy 95.8 0.0051 1.7E-07 47.2 3.0 24 31-55 10-33 (223)
379 2bov_A RAla, RAS-related prote 95.8 0.0054 1.9E-07 44.6 3.0 22 35-57 16-37 (206)
380 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0056 1.9E-07 43.7 3.0 22 35-57 7-28 (186)
381 1njg_A DNA polymerase III subu 95.8 0.006 2.1E-07 44.9 3.3 34 21-56 31-67 (250)
382 3cmu_A Protein RECA, recombina 95.8 0.028 9.6E-07 55.2 8.6 25 30-55 1424-1448(2050)
383 1vg8_A RAS-related protein RAB 95.8 0.0057 1.9E-07 44.6 3.1 23 35-58 10-32 (207)
384 3eph_A TRNA isopentenyltransfe 95.8 0.005 1.7E-07 51.4 3.0 23 34-57 3-25 (409)
385 2ocp_A DGK, deoxyguanosine kin 95.8 0.0055 1.9E-07 46.6 3.0 23 33-56 2-24 (241)
386 3bwd_D RAC-like GTP-binding pr 95.7 0.0061 2.1E-07 43.4 3.0 22 35-57 10-31 (182)
387 2h92_A Cytidylate kinase; ross 95.7 0.0054 1.8E-07 45.7 2.8 21 33-54 3-23 (219)
388 2fg5_A RAB-22B, RAS-related pr 95.7 0.0061 2.1E-07 44.3 3.0 23 35-58 25-47 (192)
389 1knx_A Probable HPR(Ser) kinas 95.7 0.0051 1.7E-07 49.6 2.8 34 20-56 136-169 (312)
390 3tkl_A RAS-related protein RAB 95.7 0.0061 2.1E-07 44.0 3.0 23 35-58 18-40 (196)
391 1z06_A RAS-related protein RAB 95.7 0.0064 2.2E-07 43.9 3.1 22 35-57 22-43 (189)
392 3ld9_A DTMP kinase, thymidylat 95.7 0.0058 2E-07 46.8 3.0 25 30-55 18-42 (223)
393 2xtp_A GTPase IMAP family memb 95.7 0.0057 2E-07 46.9 2.9 22 35-57 24-45 (260)
394 3lxw_A GTPase IMAP family memb 95.7 0.0057 2E-07 47.0 2.9 21 35-56 23-43 (247)
395 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0049 1.7E-07 50.1 2.6 26 30-56 120-145 (331)
396 2gf9_A RAS-related protein RAB 95.7 0.0065 2.2E-07 43.9 3.0 23 35-58 24-46 (189)
397 1wf3_A GTP-binding protein; GT 95.7 0.0057 2E-07 48.6 3.0 22 35-57 9-30 (301)
398 1ksh_A ARF-like protein 2; sma 95.7 0.0057 1.9E-07 43.9 2.6 25 33-58 18-42 (186)
399 2gf0_A GTP-binding protein DI- 95.7 0.0066 2.3E-07 43.9 3.0 22 35-57 10-31 (199)
400 2ew1_A RAS-related protein RAB 95.7 0.0064 2.2E-07 45.0 3.0 23 35-58 28-50 (201)
401 1zj6_A ADP-ribosylation factor 95.7 0.0063 2.2E-07 43.9 2.9 22 35-57 18-39 (187)
402 1sxj_D Activator 1 41 kDa subu 95.7 0.0031 1.1E-07 50.1 1.3 37 19-57 43-81 (353)
403 1zbd_A Rabphilin-3A; G protein 95.7 0.0065 2.2E-07 44.3 3.0 23 35-58 10-32 (203)
404 2iwr_A Centaurin gamma 1; ANK 95.7 0.0054 1.9E-07 43.6 2.5 23 35-58 9-31 (178)
405 2r62_A Cell division protease 95.7 0.0023 8E-08 49.2 0.5 21 36-57 47-67 (268)
406 3b1v_A Ferrous iron uptake tra 95.6 0.006 2E-07 47.9 2.9 21 35-56 5-25 (272)
407 3oes_A GTPase rhebl1; small GT 95.6 0.0066 2.3E-07 44.4 3.0 23 35-58 26-48 (201)
408 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0078 2.7E-07 45.7 3.5 26 31-57 37-62 (262)
409 2a5j_A RAS-related protein RAB 95.6 0.007 2.4E-07 43.8 3.0 23 35-58 23-45 (191)
410 2fh5_B SR-beta, signal recogni 95.6 0.0069 2.4E-07 44.6 3.0 23 35-58 9-31 (214)
411 3c5c_A RAS-like protein 12; GD 95.6 0.0073 2.5E-07 43.8 3.1 23 35-58 23-45 (187)
412 2v3c_C SRP54, signal recogniti 95.6 0.0045 1.6E-07 51.9 2.2 30 27-58 92-123 (432)
413 1xx6_A Thymidine kinase; NESG, 95.6 0.0073 2.5E-07 45.1 3.1 24 31-55 6-29 (191)
414 3dz8_A RAS-related protein RAB 95.6 0.0065 2.2E-07 44.0 2.8 23 35-58 25-47 (191)
415 2atv_A RERG, RAS-like estrogen 95.6 0.0075 2.6E-07 43.9 3.1 22 35-57 30-51 (196)
416 3reg_A RHO-like small GTPase; 95.6 0.0074 2.5E-07 43.7 3.0 23 35-58 25-47 (194)
417 1x3s_A RAS-related protein RAB 95.6 0.0076 2.6E-07 43.4 3.0 23 35-58 17-39 (195)
418 4dhe_A Probable GTP-binding pr 95.6 0.0046 1.6E-07 45.8 1.9 23 34-57 30-52 (223)
419 3iev_A GTP-binding protein ERA 95.6 0.0067 2.3E-07 48.2 2.9 23 34-57 11-33 (308)
420 1zd9_A ADP-ribosylation factor 95.6 0.0077 2.6E-07 43.6 3.0 23 35-58 24-46 (188)
421 2bcg_Y Protein YP2, GTP-bindin 95.6 0.0074 2.5E-07 44.2 3.0 22 35-57 10-31 (206)
422 1ypw_A Transitional endoplasmi 95.6 0.0036 1.2E-07 56.3 1.5 31 25-57 504-534 (806)
423 2cjw_A GTP-binding protein GEM 95.6 0.0075 2.6E-07 44.1 3.0 20 35-55 8-27 (192)
424 1sky_E F1-ATPase, F1-ATP synth 95.5 0.007 2.4E-07 51.4 3.0 33 20-55 140-172 (473)
425 1p5z_B DCK, deoxycytidine kina 95.5 0.0042 1.4E-07 48.0 1.6 25 30-55 21-45 (263)
426 3n70_A Transport activator; si 95.5 0.0083 2.8E-07 42.1 3.0 23 31-54 22-44 (145)
427 3cbq_A GTP-binding protein REM 95.5 0.0058 2E-07 44.9 2.2 19 35-54 25-43 (195)
428 2h17_A ADP-ribosylation factor 95.5 0.0066 2.2E-07 43.6 2.4 22 35-57 23-44 (181)
429 4bas_A ADP-ribosylation factor 95.5 0.0063 2.2E-07 44.0 2.4 22 34-56 18-39 (199)
430 2p5s_A RAS and EF-hand domain 95.5 0.0083 2.8E-07 43.8 3.0 24 34-58 29-52 (199)
431 2o52_A RAS-related protein RAB 95.5 0.0073 2.5E-07 44.3 2.7 21 35-56 27-47 (200)
432 1q57_A DNA primase/helicase; d 95.5 0.0055 1.9E-07 51.9 2.3 36 19-56 229-264 (503)
433 2v1u_A Cell division control p 95.5 0.0083 2.8E-07 47.9 3.2 25 31-56 42-66 (387)
434 3cph_A RAS-related protein SEC 95.5 0.0087 3E-07 43.8 3.0 22 35-57 22-43 (213)
435 1gwn_A RHO-related GTP-binding 95.5 0.0085 2.9E-07 44.4 3.0 22 35-57 30-51 (205)
436 3dm5_A SRP54, signal recogniti 95.4 0.0073 2.5E-07 50.9 2.8 26 32-58 99-124 (443)
437 2h57_A ADP-ribosylation factor 95.4 0.0058 2E-07 44.2 1.9 22 35-57 23-44 (190)
438 2fv8_A H6, RHO-related GTP-bin 95.4 0.0095 3.2E-07 43.8 3.0 22 35-57 27-48 (207)
439 2qu8_A Putative nucleolar GTP- 95.4 0.0082 2.8E-07 45.0 2.6 22 35-57 31-52 (228)
440 2q3h_A RAS homolog gene family 95.4 0.0089 3E-07 43.5 2.8 23 34-57 21-43 (201)
441 3t1o_A Gliding protein MGLA; G 95.3 0.0087 3E-07 43.0 2.7 21 35-57 16-36 (198)
442 1c9k_A COBU, adenosylcobinamid 95.3 0.0086 2.9E-07 44.5 2.6 21 36-57 2-22 (180)
443 2f7s_A C25KG, RAS-related prot 95.3 0.0093 3.2E-07 44.0 2.9 22 35-57 27-48 (217)
444 2j1l_A RHO-related GTP-binding 95.3 0.0089 3.1E-07 44.3 2.8 21 35-56 36-56 (214)
445 2il1_A RAB12; G-protein, GDP, 95.3 0.0073 2.5E-07 43.9 2.2 20 35-55 28-47 (192)
446 3syl_A Protein CBBX; photosynt 95.3 0.011 3.6E-07 46.3 3.2 26 32-58 66-91 (309)
447 2atx_A Small GTP binding prote 95.3 0.011 3.6E-07 42.8 3.0 22 35-57 20-41 (194)
448 2b6h_A ADP-ribosylation factor 95.3 0.0077 2.6E-07 43.9 2.3 21 34-55 30-50 (192)
449 4gzl_A RAS-related C3 botulinu 95.3 0.011 3.6E-07 43.6 3.0 23 34-57 31-53 (204)
450 2chg_A Replication factor C sm 95.3 0.0097 3.3E-07 43.3 2.7 21 35-56 40-60 (226)
451 2gco_A H9, RHO-related GTP-bin 95.2 0.011 3.8E-07 43.3 3.0 22 35-57 27-48 (201)
452 2fu5_C RAS-related protein RAB 95.2 0.0063 2.2E-07 43.5 1.6 20 35-55 10-29 (183)
453 2hup_A RAS-related protein RAB 95.2 0.012 4E-07 43.3 3.0 22 35-57 31-52 (201)
454 3iby_A Ferrous iron transport 95.2 0.011 3.6E-07 45.9 2.9 22 35-57 3-24 (256)
455 3t5d_A Septin-7; GTP-binding p 95.2 0.0099 3.4E-07 46.2 2.7 18 36-54 11-28 (274)
456 3uk6_A RUVB-like 2; hexameric 95.1 0.011 3.9E-07 47.2 3.0 28 31-59 68-95 (368)
457 3a1s_A Iron(II) transport prot 95.1 0.012 4.2E-07 45.5 3.0 21 35-56 7-27 (258)
458 2z4s_A Chromosomal replication 95.1 0.011 3.6E-07 49.5 2.7 23 33-56 130-152 (440)
459 3q3j_B RHO-related GTP-binding 95.1 0.013 4.6E-07 43.5 3.0 22 35-57 29-50 (214)
460 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.015 5E-07 46.5 3.4 27 31-58 43-69 (322)
461 2g3y_A GTP-binding protein GEM 95.0 0.013 4.6E-07 44.0 2.9 20 35-55 39-58 (211)
462 3p32_A Probable GTPase RV1496/ 95.0 0.012 4E-07 47.8 2.8 24 33-57 79-102 (355)
463 4hlc_A DTMP kinase, thymidylat 95.0 0.012 4.2E-07 44.1 2.7 23 33-56 2-24 (205)
464 2j0v_A RAC-like GTP-binding pr 95.0 0.014 4.8E-07 42.8 3.0 23 35-58 11-33 (212)
465 3cpj_B GTP-binding protein YPT 95.0 0.015 5E-07 43.4 3.1 23 35-58 15-37 (223)
466 1jwy_B Dynamin A GTPase domain 95.0 0.013 4.4E-07 46.0 2.9 22 35-57 26-47 (315)
467 3gmt_A Adenylate kinase; ssgci 95.0 0.014 4.6E-07 45.1 2.9 21 34-55 9-29 (230)
468 1g8f_A Sulfate adenylyltransfe 95.0 0.012 4E-07 50.5 2.7 28 31-59 393-420 (511)
469 2r8r_A Sensor protein; KDPD, P 95.0 0.016 5.6E-07 44.6 3.3 28 31-58 3-30 (228)
470 2dby_A GTP-binding protein; GD 95.0 0.013 4.4E-07 48.2 2.8 20 35-55 3-22 (368)
471 3def_A T7I23.11 protein; chlor 94.9 0.015 5E-07 44.9 2.9 21 35-56 38-58 (262)
472 1d2n_A N-ethylmaleimide-sensit 94.9 0.014 4.6E-07 45.1 2.7 23 33-56 64-86 (272)
473 3llu_A RAS-related GTP-binding 94.9 0.016 5.5E-07 42.2 3.0 19 35-54 22-40 (196)
474 3hws_A ATP-dependent CLP prote 94.9 0.017 5.8E-07 46.6 3.4 26 32-58 50-75 (363)
475 3i8s_A Ferrous iron transport 94.9 0.015 5.1E-07 45.4 3.0 21 35-56 5-25 (274)
476 2yc2_C IFT27, small RAB-relate 94.9 0.0069 2.4E-07 44.0 0.9 22 35-57 22-43 (208)
477 1ofh_A ATP-dependent HSL prote 94.9 0.017 5.8E-07 44.8 3.2 25 33-58 50-74 (310)
478 1tue_A Replication protein E1; 94.8 0.016 5.3E-07 44.2 2.8 27 30-57 55-81 (212)
479 2qby_B CDC6 homolog 3, cell di 94.8 0.018 6.3E-07 46.1 3.4 23 33-56 45-67 (384)
480 1jal_A YCHF protein; nucleotid 94.8 0.018 6E-07 47.3 3.3 23 33-56 2-24 (363)
481 1m8p_A Sulfate adenylyltransfe 94.8 0.015 5.1E-07 50.4 3.0 22 32-54 395-416 (573)
482 2xxa_A Signal recognition part 94.8 0.015 5.2E-07 48.7 2.9 27 31-58 98-124 (433)
483 1h65_A Chloroplast outer envel 94.8 0.017 5.6E-07 44.8 2.9 21 35-56 41-61 (270)
484 3gj0_A GTP-binding nuclear pro 94.8 0.0077 2.6E-07 44.7 1.0 20 35-55 17-36 (221)
485 2x77_A ADP-ribosylation factor 94.7 0.011 3.7E-07 42.6 1.7 20 34-54 23-42 (189)
486 4djt_A GTP-binding nuclear pro 94.7 0.0063 2.2E-07 45.0 0.3 20 35-55 13-32 (218)
487 3t15_A Ribulose bisphosphate c 94.7 0.021 7.2E-07 45.0 3.4 24 34-58 37-60 (293)
488 2qen_A Walker-type ATPase; unk 94.7 0.02 6.7E-07 45.0 3.2 25 30-55 28-52 (350)
489 3eie_A Vacuolar protein sortin 94.7 0.021 7.3E-07 45.3 3.4 26 32-58 50-75 (322)
490 2aka_B Dynamin-1; fusion prote 94.6 0.016 5.5E-07 45.0 2.6 22 35-57 28-49 (299)
491 2qgz_A Helicase loader, putati 94.6 0.021 7E-07 45.5 3.3 23 33-56 152-174 (308)
492 1x6v_B Bifunctional 3'-phospho 94.6 0.017 5.8E-07 50.7 2.9 24 32-56 51-74 (630)
493 2axn_A 6-phosphofructo-2-kinas 94.5 0.02 6.7E-07 49.0 3.0 26 31-57 33-58 (520)
494 3d8b_A Fidgetin-like protein 1 94.5 0.025 8.7E-07 45.7 3.5 25 32-57 116-140 (357)
495 1yrb_A ATP(GTP)binding protein 94.5 0.02 6.9E-07 43.5 2.7 22 33-55 14-35 (262)
496 3co5_A Putative two-component 94.4 0.012 3.9E-07 41.3 1.1 22 31-53 25-46 (143)
497 1bif_A 6-phosphofructo-2-kinas 94.4 0.021 7.2E-07 47.9 2.9 25 32-57 38-62 (469)
498 1um8_A ATP-dependent CLP prote 94.3 0.027 9.3E-07 45.5 3.4 25 33-58 72-96 (376)
499 3pvs_A Replication-associated 94.3 0.015 5E-07 48.9 1.8 34 23-58 39-74 (447)
500 2j37_W Signal recognition part 94.3 0.02 7E-07 48.9 2.7 26 31-57 99-124 (504)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.2e-37 Score=249.77 Aligned_cols=143 Identities=21% Similarity=0.252 Sum_probs=110.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccc--ccCHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIR--SLGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~--~~~~~~~~~~~ 76 (163)
+++|.|++ +.++|+||||+ |++||+++|+| ||||||||| ++++.|+.+| + ++. .....++++++
T Consensus 12 ~ls~~y~~--~~~~L~~isl~-i~~Ge~~~iiG-pnGsGKSTL-l~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 12 ELNYNYSD--GTHALKGINMN-IKRGEVTAILG-GNGVGKSTL-FQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEECTT--SCEEEEEEEEE-EETTSEEEEEC-CTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEECC--CCeEEEeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 67899964 34699999999 99999999999 999999999 7788888877 1 221 12233456666
Q ss_pred --cccCCCccccc---------C---CCC-------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 --LAQNQSAQAFL---------G---PEN-------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 --~~q~~~~~~~~---------~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
+||+|..+++. . ... +.+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L----~~~~~~~~~~LSgGqkQRv~iAraL~--- 159 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI----EHLKDKPTHCLSFGQKKRVAIAGVLV--- 159 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC----GGGTTSBGGGSCHHHHHHHHHHHHHT---
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----chhhcCCcccCCHHHHHHHHHHHHHH---
Confidence 77877544431 0 000 11235666676 77889999999999999999999995
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++|||||||+||+.++.++.++|
T Consensus 160 -~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 160 -MEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp -TCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred -cCCCEEEEECccccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 2
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.7e-36 Score=244.32 Aligned_cols=144 Identities=26% Similarity=0.315 Sum_probs=110.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.|++ +.++|+||||+ |++||+++|+| ||||||||| ++++.++++| .++...+..++|+++
T Consensus 58 ~vs~~y~~--~~~vL~~isl~-i~~Ge~vaivG-~sGsGKSTL-l~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~ 132 (306)
T 3nh6_A 58 NVHFSYAD--GRETLQDVSFT-VMPGQTLALVG-PSGAGKSTI-LRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132 (306)
T ss_dssp EEEEESST--TCEEEEEEEEE-ECTTCEEEEES-SSCHHHHHH-HHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEE
T ss_pred EEEEEcCC--CCceeeeeeEE-EcCCCEEEEEC-CCCchHHHH-HHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEE
Confidence 67899974 36799999999 99999999999 999999999 7888999887 356677778888887
Q ss_pred cccCCCcccc---------cCC-CCCch---hHHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAF---------LGP-ENPEE---PYLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~---------~~~-~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+| ++. ....+ .+++.+++. .......++++.+||||||||++|||||+
T Consensus 133 v~Q~~--~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~---- 206 (306)
T 3nh6_A 133 VPQDT--VLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL---- 206 (306)
T ss_dssp ECSSC--CCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH----
T ss_pred EecCC--ccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH----
Confidence 55554 343 122 11121 123333221 01144567788999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++||||||||+||+.++..|++.
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~ 232 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQAS 232 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHH
Confidence 68999999999999999999998875
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.7e-36 Score=249.99 Aligned_cols=143 Identities=19% Similarity=0.206 Sum_probs=111.0
Q ss_pred cceeeCCCC-CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHH---HHH
Q psy17517 8 AQAFLGPEN-PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLED---LRS 74 (163)
Q Consensus 8 ~~~f~y~~~-~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~---~~~ 74 (163)
++++.|+.. +..++|+||||+ |++||+++|+| ||||||||| ++++.++.+| .++...+..+ +|+
T Consensus 29 ~ls~~y~~~~~~~~aL~~vsl~-i~~Gei~~IiG-pnGaGKSTL-lr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 105 (366)
T 3tui_C 29 NITKVFHQGTRTIQALNNVSLH-VPAGQIYGVIG-ASGAGKSTL-IRCVNLLERPTEGSVLVDGQELTTLSESELTKARR 105 (366)
T ss_dssp EEEEEEECSSSEEEEEEEEEEE-ECTTCEEEEEC-CTTSSHHHH-HHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHT
T ss_pred eEEEEeCCCCCCeEEEEeeEEE-EcCCCEEEEEc-CCCchHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhC
Confidence 567888642 235699999999 99999999999 999999999 7788888877 2444444443 455
Q ss_pred hc--cccCCCcccccC---------------CC-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 75 MA--LAQNQSAQAFLG---------------PE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 75 ~~--~~q~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++ +||++ .++.. .. .+.+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 106 ~Ig~v~Q~~--~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL----~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 106 QIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL----GDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp TEEEECSSC--CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC----GGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred cEEEEeCCC--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----chHhcCChhhCCHHHHHHHHHHHHHh
Confidence 56 67765 23311 00 011236677777 77889999999999999999999995
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|++||||||||+||+.++.+++++|
T Consensus 180 ----~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 180 ----SNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp ----TCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred ----cCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.4e-36 Score=236.93 Aligned_cols=143 Identities=20% Similarity=0.177 Sum_probs=106.1
Q ss_pred cceeeCCCCC-CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHH---H-
Q psy17517 8 AQAFLGPENP-EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDL---R- 73 (163)
Q Consensus 8 ~~~f~y~~~~-~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~---~- 73 (163)
+++|.|+... +.++|+||||+ |++||+++|+| ||||||||| ++++.++.+| .++...+..++ +
T Consensus 6 ~l~~~y~~~~~~~~~L~~isl~-i~~Ge~~~iiG-~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 82 (235)
T 3tif_A 6 NVTKTYKMGEEIIYALKNVNLN-IKEGEFVSIMG-PSGSGKSTM-LNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82 (235)
T ss_dssp EEEEEEEETTEEEEEEEEEEEE-ECTTCEEEEEC-STTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEeCCCCcceeeEEeeeEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhh
Confidence 5788886432 24699999999 99999999999 999999999 7788888877 23344444432 3
Q ss_pred Hhc--cccCCCcccccC-------------C---CCCc-------hhHHHhchhcccCCCc-cCCCCCCCCHHHHHHHHH
Q psy17517 74 SMA--LAQNQSAQAFLG-------------P---ENPE-------EPYLQGVNYNCVAPGK-RFQPMTNLSGGEKTVAAL 127 (163)
Q Consensus 74 ~~~--~~q~~~~~~~~~-------------~---~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~LSgGqkQrvai 127 (163)
+.+ ++|++. ++.. . .... .++++.+++ .+. .++++.+|||||||||+|
T Consensus 83 ~~i~~v~Q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 83 DKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHEEEECTTCC--CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTC----CGGGTTCCGGGSCHHHHHHHHH
T ss_pred ccEEEEecCCc--cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCC----ChhhhhCChhhCCHHHHHHHHH
Confidence 335 677652 2210 0 0011 124455555 443 488999999999999999
Q ss_pred HHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 128 ALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 128 AraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||+ ++|+++||||||++||+.++.++.++|
T Consensus 157 Aral~----~~p~llllDEPts~LD~~~~~~i~~~l 188 (235)
T 3tif_A 157 ARALA----NNPPIILADQPTWALDSKTGEKIMQLL 188 (235)
T ss_dssp HHHHT----TCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 99995 889999999999999999999988753
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.6e-36 Score=240.82 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=110.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.|+ +.++|+||||+ |++||+++|+| ||||||||| ++++.|+.+| .++...+..++++.+
T Consensus 16 ~l~~~~~---~~~vL~~vsl~-i~~Ge~~~liG-~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 16 HLHYHVQ---QQALINDVSLH-IASGEMVAIIG-PNGAGKSTL-LRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEET---TEEEEEEEEEE-EETTCEEEEEC-CTTSCHHHH-HHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeC---CeeEEEeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 5678885 36799999999 99999999999 999999999 7788888877 244555666666665
Q ss_pred cccCCCcccc--------cCC----CCC----chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC---
Q psy17517 77 LAQNQSAQAF--------LGP----ENP----EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH--- 137 (163)
Q Consensus 77 ~~q~~~~~~~--------~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~--- 137 (163)
++|++..... +.. ... .+++++.+++ .+..++++.+||||||||++|||||+ +
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~QRv~iAraL~----~~~~ 161 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDC----LALAQRDYRVLSGGEQQRVQLARVLA----QLWQ 161 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTC----STTTTSBGGGCCHHHHHHHHHHHHHH----HTCC
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCC----hhHhcCCcccCCHHHHHHHHHHHHHh----cccc
Confidence 5555421110 110 111 1235666776 77889999999999999999999997 5
Q ss_pred ---CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 ---PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ---~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++|||||||+||+.++.++.++|
T Consensus 162 ~~~~p~lLllDEPts~LD~~~~~~i~~~l 190 (266)
T 4g1u_C 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLL 190 (266)
T ss_dssp SSCCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 79999999999999999999988753
No 6
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.6e-35 Score=236.76 Aligned_cols=143 Identities=25% Similarity=0.392 Sum_probs=107.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.|++.++.++|+||||+ |++||+++|+| ||||||||| ++++.++.+| .++...+...+++++
T Consensus 21 ~l~~~y~~~~~~~vl~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~ 97 (271)
T 2ixe_A 21 DVSFAYPNHPNVQVLQGLTFT-LYPGKVTALVG-PNGSGKSTV-AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97 (271)
T ss_dssp EEEECCTTCTTSCCEEEEEEE-ECTTCEEEEEC-STTSSHHHH-HHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEE
T ss_pred EEEEEeCCCCCceeeEeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEE
Confidence 678899642236799999999 99999999999 999999999 7788888877 233444555666666
Q ss_pred cccCCCcccc---------cCCCC-Cc-h------------hHHHhc--hhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 77 LAQNQSAQAF---------LGPEN-PE-E------------PYLQGV--NYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 77 ~~q~~~~~~~---------~~~~~-~~-~------------~~~~~~--~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
++|++ .+| +.... .. + ++++.+ ++ ....++++.+|||||||||+|||||
T Consensus 98 v~Q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl----~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 98 VGQEP--LLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY----DTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp ECSSC--CCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGG----GSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred EecCC--ccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcch----hhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 56654 222 11111 11 1 122222 33 5667888999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+ ++|+++|||||||+||+.++..+.+.|
T Consensus 172 ~----~~p~lllLDEPts~LD~~~~~~i~~~l 199 (271)
T 2ixe_A 172 I----RKPRLLILDNATSALDAGNQLRVQRLL 199 (271)
T ss_dssp T----TCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred h----cCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 5 889999999999999999999988753
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.6e-35 Score=230.67 Aligned_cols=139 Identities=21% Similarity=0.164 Sum_probs=106.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHH---HHH-H
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLE---DLR-S 74 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~---~~~-~ 74 (163)
+.+|.|++ .++|+||||+ |++||+++|+| ||||||||| ++++.++.+| .++...+.. .++ +
T Consensus 9 ~l~~~y~~---~~~l~~vsl~-i~~Ge~~~iiG-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 9 NIKKVIRG---YEILKGISLS-VKKGEFVSIIG-ASGSGKSTL-LYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEETT---EEEEEEEEEE-EETTCEEEEEE-CTTSCHHHH-HHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred eEEEEECC---EeeEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 57888853 5799999999 99999999999 999999999 6778888877 123333332 233 4
Q ss_pred hc--cccCCCcccccCC-------------C-C------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 75 MA--LAQNQSAQAFLGP-------------E-N------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 75 ~~--~~q~~~~~~~~~~-------------~-~------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
++ ++|++ .++... . . ..+++++.+++ .+..++++.+||||||||++|||||+
T Consensus 83 ~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 83 KLGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGL----GDKLSRKPYELSGGEQQRVAIARALA 156 (224)
T ss_dssp HEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC----TTCTTCCGGGSCHHHHHHHHHHHHTT
T ss_pred cEEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----chhhhCChhhCCHHHHHHHHHHHHHH
Confidence 45 56654 222100 0 0 01235666666 67889999999999999999999995
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|+++||||||++||+.++..+.++
T Consensus 157 ----~~p~lllLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 157 ----NEPILLFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp ----TCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 88999999999999999999998875
No 8
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.7e-35 Score=230.69 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=107.7
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~- 76 (163)
.+++|.|+++ +.++|+||||+ |++||+++|+| ||||||||| ++++.++.+| .++...+..++++++
T Consensus 11 ~~l~~~y~~~-~~~vl~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 11 RNIRFRYKPD-SPVILDNINLS-IKQGEVIGIVG-RSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEESSTT-SCEEEEEEEEE-EETTCEEEEEC-STTSSHHHH-HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred EEEEEEeCCC-CcceeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 3678999532 35799999999 99999999999 999999999 7788888877 234444555667666
Q ss_pred -cccCCCcccc---------cCC-CCCch---hHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 -LAQNQSAQAF---------LGP-ENPEE---PYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 -~~q~~~~~~~---------~~~-~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
++|++ .+| +.. ....+ ++++.+++.. ......++++.+||||||||++|||||+
T Consensus 87 ~v~Q~~--~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~--- 161 (247)
T 2ff7_A 87 VVLQDN--VLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV--- 161 (247)
T ss_dssp EECSSC--CCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT---
T ss_pred EEeCCC--ccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh---
Confidence 55554 222 111 11111 2333333310 1134556778999999999999999995
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|+++||||||++||+.++..+.+.|
T Consensus 162 -~~p~lllLDEPts~LD~~~~~~i~~~l 188 (247)
T 2ff7_A 162 -NNPKILIFDEATSALDYESEHVIMRNM 188 (247)
T ss_dssp -TCCSEEEECCCCSCCCHHHHHHHHHHH
T ss_pred -cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 889999999999999999999988753
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.3e-35 Score=234.16 Aligned_cols=140 Identities=23% Similarity=0.268 Sum_probs=107.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccc--ccCHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIR--SLGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~--~~~~~~~~~~~ 76 (163)
+++|.|+ +.++|+||||+ |++||+++|+| ||||||||| ++++.++.+| + ++. ......+++++
T Consensus 29 ~l~~~y~---~~~vL~~vsl~-i~~Gei~~liG-~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 29 QLKKSFG---SLEVLKGINVH-IREGEVVVVIG-PSGSGKSTF-LRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp EEEEEET---TEEEEEEEEEE-ECTTCEEEEEC-CTTSSHHHH-HHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEEC---CEEEEEeeEEE-EcCCCEEEEEc-CCCCcHHHH-HHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 6788885 35799999999 99999999999 999999999 7778888877 1 221 12334556666
Q ss_pred --cccCCCcccccC-------------CCC-C-------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 77 --LAQNQSAQAFLG-------------PEN-P-------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 77 --~~q~~~~~~~~~-------------~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
++|++ .++.. ... . .+++++.+++ .+..++++.+||||||||++|||||+
T Consensus 103 ~~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L----~~~~~~~~~~LSgGqkQRv~lAraL~- 175 (263)
T 2olj_A 103 GMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL----KDKAHAYPDSLSGGQAQRVAIARALA- 175 (263)
T ss_dssp EEECSSC--CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC----GGGTTSCGGGSCHHHHHHHHHHHHHT-
T ss_pred EEEeCCC--cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----chHhcCChhhCCHHHHHHHHHHHHHH-
Confidence 56654 22210 000 0 1235666666 67788999999999999999999995
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 176 ---~~p~lllLDEPts~LD~~~~~~~~~~l 202 (263)
T 2olj_A 176 ---MEPKIMLFDEPTSALDPEMVGEVLSVM 202 (263)
T ss_dssp ---TCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred ---CCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 789999999999999999999988753
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6e-35 Score=229.57 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=106.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHH-Hhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLR-SMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~-~~~- 76 (163)
+++|.|++ .++|+||||+ |++||+++|+| ||||||||| ++++.++.+| .++...+..+++ +++
T Consensus 11 ~l~~~y~~---~~vl~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 11 SLHVYYGA---IHAIKGIDLK-VPRGQIVTLIG-ANGAGKTTT-LSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEETT---EEEEEEEEEE-EETTCEEEEEC-STTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEECC---eeEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 67888953 5799999999 99999999999 999999999 7788888877 133334444443 335
Q ss_pred -cccCCCcccc-----------cC-CC-CCc------hhHHHhc-hhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 -LAQNQSAQAF-----------LG-PE-NPE------EPYLQGV-NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 -~~q~~~~~~~-----------~~-~~-~~~------~~~~~~~-~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
++|++ .+| .. .. ... +++++.+ ++ .+..++++.+||||||||++|||||+
T Consensus 85 ~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l----~~~~~~~~~~LSgGq~qrv~lAraL~--- 155 (240)
T 1ji0_A 85 LVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL----KERLKQLGGTLSGGEQQMLAIGRALM--- 155 (240)
T ss_dssp EECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH----HTTTTSBSSSSCHHHHHHHHHHHHHT---
T ss_pred EEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccH----hhHhcCChhhCCHHHHHHHHHHHHHH---
Confidence 55554 222 11 11 111 1245555 36 67788999999999999999999995
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|+++||||||++||+.++..+.+.|
T Consensus 156 -~~p~lllLDEPts~LD~~~~~~l~~~l 182 (240)
T 1ji0_A 156 -SRPKLLMMDEPSLGLAPILVSEVFEVI 182 (240)
T ss_dssp -TCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred -cCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 889999999999999999999988753
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.1e-35 Score=234.28 Aligned_cols=142 Identities=14% Similarity=0.048 Sum_probs=106.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHH-HHHHhc-
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLE-DLRSMA- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~-~~~~~~- 76 (163)
+++|.|++ .++|+||||+ |++||+++|+| ||||||||| ++++.|+.+| + ++...+.. .+++.+
T Consensus 12 ~l~~~y~~---~~vl~~vsl~-i~~Ge~~~liG-~nGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 12 NIVKYFGE---FKALDGVSIS-VNKGDVTLIIG-PNGSGKSTL-INVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEETT---EEEEEEECCE-EETTCEEEEEC-STTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred eeEEEECC---EeeEeeeEEE-EeCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 67888953 5799999999 99999999999 999999999 7788888877 1 23333322 334555
Q ss_pred -cccCCCc---------cccc-CC---C------------CCc------hhHHHhchhcccCCCccCCCCCCCCHHHHHH
Q psy17517 77 -LAQNQSA---------QAFL-GP---E------------NPE------EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTV 124 (163)
Q Consensus 77 -~~q~~~~---------~~~~-~~---~------------~~~------~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQr 124 (163)
++|++.. ..+. .. . ... +++++.+++ .+..++++.+||||||||
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL----SHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC----GGGTTSBGGGSCHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCC----chhhCCCchhCCHHHHHH
Confidence 6665411 1111 11 0 011 125566666 677899999999999999
Q ss_pred HHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 125 AALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 125 vaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+|||||+ ++|+++||||||++||+.++..+.++|
T Consensus 162 v~iAraL~----~~p~lllLDEPts~LD~~~~~~l~~~l 196 (257)
T 1g6h_A 162 VEIGRALM----TNPKMIVMDEPIAGVAPGLAHDIFNHV 196 (257)
T ss_dssp HHHHHHHH----TCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 99999996 789999999999999999999988753
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-35 Score=245.30 Aligned_cols=138 Identities=26% Similarity=0.223 Sum_probs=106.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccc--cCHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRS--LGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~--~~~~~~~~~~ 76 (163)
++++.|. +.++|+||||+ |++||+++|+| ||||||||| ++++.|+..| + ++.. ......++.+
T Consensus 9 ~ls~~y~---~~~~L~~vsl~-i~~Ge~~~llG-psGsGKSTL-Lr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 9 HLSKSFQ---NTPVLNDISLS-LDPGEILFIIG-ASGCGKTTL-LRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp EEEEEET---TEEEEEEEEEE-ECTTCEEEEEE-STTSSHHHH-HHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred eEEEEEC---CEEEEEeeEEE-EcCCCEEEEEC-CCCchHHHH-HHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 6778885 36799999999 99999999999 999999999 7888999887 1 2211 1111223445
Q ss_pred --cccCCCcccc----------cCCCC----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 77 --LAQNQSAQAF----------LGPEN----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 77 --~~q~~~~~~~----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
+||++ .+| ++... +.+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 83 g~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL----~~~~~r~~~~LSGGq~QRValArAL~-- 154 (359)
T 3fvq_A 83 GYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGI----SELAGRYPHELSGGQQQRAALARALA-- 154 (359)
T ss_dssp EEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTC----GGGTTSCGGGSCHHHHHHHHHHHHHT--
T ss_pred EEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC----chHhcCChhhCCHHHHHHHHHHHHHH--
Confidence 67765 233 11111 11236777777 78899999999999999999999995
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
.+|++||||||||+||+..+.++++
T Consensus 155 --~~P~lLLLDEPts~LD~~~r~~l~~ 179 (359)
T 3fvq_A 155 --PDPELILLDEPFSALDEQLRRQIRE 179 (359)
T ss_dssp --TCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred --cCCCEEEEeCCcccCCHHHHHHHHH
Confidence 7899999999999999999998875
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.2e-36 Score=250.83 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=107.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
++++.|+ +.++|+||||+ |++||+++|+| ||||||||| ++++.|+..| .++...+.. ++.+
T Consensus 8 ~l~~~yg---~~~~L~~vsl~-i~~Ge~~~llG-psGsGKSTL-Lr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 8 NVTKAWG---EVVVSKDINLD-IHEGEFVVFVG-PSGCGKSTL-LRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp EEEEEET---TEEEEEEEEEE-ECTTCEEEEEC-CTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred eEEEEEC---CEEEEeeeEEE-ECCCCEEEEEc-CCCchHHHH-HHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 6788885 36799999999 99999999999 999999999 7888999887 233334433 2344
Q ss_pred cccCCCcccccC---------------CC-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLG---------------PE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+|.. .. .+.+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 80 VfQ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L----~~~~~r~p~~LSGGqrQRVaiArAL~---- 149 (381)
T 3rlf_A 80 VFQSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL----AHLLDRKPKALSGGQRQRVAIGRTLV---- 149 (381)
T ss_dssp ECTTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC----GGGTTCCGGGSCHHHHHHHHHHHHHH----
T ss_pred EecCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----chhhcCChhHCCHHHHHHHHHHHHHH----
Confidence 67765 23311 00 011236667777 78889999999999999999999997
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|++||||||||+||+..+.++.+.
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~ 175 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLDAALRVQMRIE 175 (381)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 67999999999999999999988765
No 14
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.1e-35 Score=237.06 Aligned_cols=142 Identities=21% Similarity=0.218 Sum_probs=107.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccc--ccCHHHHHHhc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIR--SLGLEDLRSMA 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~--~~~~~~~~~~~ 76 (163)
+++|.|++ .++|+||||+ |++||+++|+| ||||||||| ++++.++.+| + ++. ..+..++++++
T Consensus 26 ~l~~~y~~---~~vL~~isl~-i~~Ge~~~liG-~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 26 QIGRMKQG---KTILKKISWQ-IAKGDKWILYG-LNGAGKTTL-LNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEETT---EEEEEEEEEE-EETTCEEEEEC-CTTSSHHHH-HHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEECC---EEEEEeeeEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 67888953 5799999999 99999999999 999999999 7788888877 1 222 33445566666
Q ss_pred --cccCCCcccc----------cCCC--------CC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 77 --LAQNQSAQAF----------LGPE--------NP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 77 --~~q~~~~~~~----------~~~~--------~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
++|++....+ +... .. .+++++.+++ .+..++++.+|||||||||+||||
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM----SAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC----GGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC----hhHhcCChhhCCHHHHHHHHHHHH
Confidence 5665421110 1110 01 1234566666 677889999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|+ .+|+++||||||++||+.++..+.++|
T Consensus 176 L~----~~p~lLlLDEPts~LD~~~~~~l~~~l 204 (279)
T 2ihy_A 176 LM----GQPQVLILDEPAAGLDFIARESLLSIL 204 (279)
T ss_dssp HH----TCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred Hh----CCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 96 789999999999999999999988753
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-35 Score=232.37 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=106.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+++|.|+ +.++|++|||+ |++||+++|+| ||||||||| ++++.++.+| + ++.. ...++++++
T Consensus 20 ~l~~~y~---~~~vl~~vsl~-i~~Gei~~l~G-~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~ 92 (256)
T 1vpl_A 20 DLRKRIG---KKEILKGISFE-IEEGEIFGLIG-PNGAGKTTT-LRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISY 92 (256)
T ss_dssp EEEEEET---TEEEEEEEEEE-ECTTCEEEEEC-CTTSSHHHH-HHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEE
T ss_pred EEEEEEC---CEEEEEeeEEE-EcCCcEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEE
Confidence 6778885 35799999999 99999999999 999999999 7788888877 2 2222 234556666
Q ss_pred cccCCCccccc---------------CCCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFL---------------GPEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .++. .... ..+++++.+++ .+..++++.+||||||||++|||||+
T Consensus 93 v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL----~~~~~~~~~~LSgGq~qRv~lAraL~---- 162 (256)
T 1vpl_A 93 LPEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL----GEKIKDRVSTYSKGMVRKLLIARALM---- 162 (256)
T ss_dssp ECTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC----GGGGGSBGGGCCHHHHHHHHHHHHHT----
T ss_pred EcCCC--CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC----chHhcCChhhCCHHHHHHHHHHHHHH----
Confidence 55554 2221 1110 11235566666 67788999999999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
.+|+++||||||++||+.++..+.++|
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l 189 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKIL 189 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 889999999999999999999988753
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-35 Score=233.06 Aligned_cols=140 Identities=20% Similarity=0.199 Sum_probs=106.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccc----------cC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRS----------LG 68 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~----------~~ 68 (163)
+++|.|+ +.++|+||||+ |++||+++|+| ||||||||| ++++.++.+| + ++.. .+
T Consensus 11 ~l~~~y~---~~~vl~~vsl~-i~~Ge~~~liG-~nGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 11 DLHKRYG---GHEVLKGVSLQ-ARAGDVISIIG-SSGSGKSTF-LRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp EEEEEET---TEEEEEEEEEE-ECTTCEEEEEC-CTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEEEC---CEEEEEeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 6788884 35799999999 99999999999 999999999 6778888877 1 2220 22
Q ss_pred H---HHHHHhc--cccCCCccccc-----------C--CCC-C-------chhHHHhchhcccCCCc-cCCCCCCCCHHH
Q psy17517 69 L---EDLRSMA--LAQNQSAQAFL-----------G--PEN-P-------EEPYLQGVNYNCVAPGK-RFQPMTNLSGGE 121 (163)
Q Consensus 69 ~---~~~~~~~--~~q~~~~~~~~-----------~--~~~-~-------~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq 121 (163)
. ..+++++ ++|++ .+|. . ... . .+++++.+++ .+. .++++.+|||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L----~~~~~~~~~~~LSgGq 158 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI----DERAQGKYPVHLSGGQ 158 (262)
T ss_dssp HHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC----CHHHHTSCGGGSCHHH
T ss_pred hhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCC----CchhhcCCcccCCHHH
Confidence 2 2345556 56654 2221 0 000 0 1235666666 667 889999999999
Q ss_pred HHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 122 KTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 122 kQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||+|||||+ ++|+++||||||++||+.++..+.++|
T Consensus 159 ~qRv~lAraL~----~~p~lllLDEPts~LD~~~~~~~~~~l 196 (262)
T 1b0u_A 159 QQRVSIARALA----MEPDVLLFDEPTSALDPELVGEVLRIM 196 (262)
T ss_dssp HHHHHHHHHHH----TCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 99999999996 789999999999999999999988753
No 17
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3e-34 Score=228.08 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=104.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--------ccccccCHHHHHHhc--c
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--------ATIRSLGLEDLRSMA--L 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--------~~i~~~~~~~~~~~~--~ 77 (163)
+++|.|++....++|+||||+ |++||+++|+| ||||||||| ++++.++.++ .++...+..++++++ +
T Consensus 22 ~l~~~y~~~~~~~vl~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v 98 (260)
T 2ghi_A 22 DVNFSYPKQTNHRTLKSINFF-IPSGTTCALVG-HTGSGKSTI-AKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIV 98 (260)
T ss_dssp EEEECCTTCCSSCSEEEEEEE-ECTTCEEEEEC-STTSSHHHH-HHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEE
T ss_pred EEEEEeCCCCcCceeEeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEE
Confidence 678899653235799999999 99999999999 999999999 6777887765 233344555666666 5
Q ss_pred ccCCCcccc---------cCC-CCCchh---HHHhchhcc---cC----CCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF---------LGP-ENPEEP---YLQGVNYNC---VA----PGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~---------~~~-~~~~~~---~~~~~~~~~---~~----~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+|++ .+| +.. ....+. +++.+++.. .. ....++++.+||||||||++|||||+ +
T Consensus 99 ~Q~~--~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~----~ 172 (260)
T 2ghi_A 99 PQDT--ILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL----K 172 (260)
T ss_dssp CSSC--CCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH----H
T ss_pred cCCC--cccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH----c
Confidence 5554 222 111 111111 233333310 00 11235678999999999999999996 6
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|+++||||||++||+.++..+.+.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~ 197 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKA 197 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHH
Confidence 7999999999999999999988775
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=9.3e-35 Score=240.22 Aligned_cols=138 Identities=21% Similarity=0.235 Sum_probs=106.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
++++.|++ +.++|+||||+ |++||+++|+| ||||||||| ++++.|+.+| + ++...+. .++.+
T Consensus 19 ~l~~~y~g--~~~vl~~vsl~-i~~Ge~~~llG-pnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 91 (355)
T 1z47_A 19 GVEKIYPG--GARSVRGVSFQ-IREGEMVGLLG-PSGSGKTTI-LRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGL 91 (355)
T ss_dssp EEEECCTT--STTCEEEEEEE-EETTCEEEEEC-STTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEE
T ss_pred EEEEEEcC--CCEEEeeeEEE-ECCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEE
Confidence 57788842 36799999999 99999999999 999999999 7788888877 1 2333332 23445
Q ss_pred cccCCCcccccC---------------CC-----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLG---------------PE-----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+|.. .. .+.+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 92 v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL----~~~~~r~~~~LSGGq~QRvalArAL~---- 161 (355)
T 1z47_A 92 VFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL----ESYANRFPHELSGGQQQRVALARALA---- 161 (355)
T ss_dssp ECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC----GGGTTSCGGGSCHHHHHHHHHHHHHT----
T ss_pred EecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----hhHhcCCcccCCHHHHHHHHHHHHHH----
Confidence 66654 22210 00 011235667777 77889999999999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|+++|||||||+||+..+.++.+.
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~ 187 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTF 187 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 78999999999999999999998765
No 19
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7e-35 Score=243.64 Aligned_cols=141 Identities=21% Similarity=0.224 Sum_probs=108.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--------ccccccCHHHHHHhc--c
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--------ATIRSLGLEDLRSMA--L 77 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--------~~i~~~~~~~~~~~~--~ 77 (163)
+++|.|+.+ +.++|+||||+ |++||+++|+| ||||||||| ++++.++... .++...+..++++.+ +
T Consensus 24 ~l~~~y~~~-~~~~L~~vsl~-i~~Ge~~~llG-psGsGKSTL-Lr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 24 DLTAKYTEG-GNAILENISFS-ISPGQRVGLLG-RTGSGKSTL-LSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp EEEEESSSS-SCCSEEEEEEE-ECTTCEEEEEE-STTSSHHHH-HHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred EEEEEecCC-CeEEeeceeEE-EcCCCEEEEEC-CCCChHHHH-HHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEE
Confidence 678899743 46899999999 99999999999 999999999 6777777654 245566677777776 6
Q ss_pred ccCCCccccc---------CCCCC---chhHHHhchhcccCCCccCCCCCC-----------CCHHHHHHHHHHHHHHhc
Q psy17517 78 AQNQSAQAFL---------GPENP---EEPYLQGVNYNCVAPGKRFQPMTN-----------LSGGEKTVAALALLFAIH 134 (163)
Q Consensus 78 ~q~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----------LSgGqkQrvaiAraL~~~ 134 (163)
||++ .+|. ..... ..++++.+++ .+..++++.+ |||||||||+|||||+
T Consensus 100 ~Q~~--~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L----~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~-- 171 (390)
T 3gd7_A 100 PQKV--FIFSGTFRKNLDPNAAHSDQEIWKVADEVGL----RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL-- 171 (390)
T ss_dssp SCCC--CCCSEEHHHHHCTTCCSCHHHHHHHHHHTTC----HHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH--
T ss_pred cCCc--ccCccCHHHHhhhccccCHHHHHHHHHHhCC----HHHHhhcccccccccccccccCCHHHHHHHHHHHHHh--
Confidence 6665 3331 11111 1235566666 5566666666 9999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++||||||||+||+..+.++++.
T Consensus 172 --~~P~lLLLDEPts~LD~~~~~~l~~~ 197 (390)
T 3gd7_A 172 --SKAKILLLDEPSAHLDPVTYQIIRRT 197 (390)
T ss_dssp --TTCCEEEEESHHHHSCHHHHHHHHHH
T ss_pred --cCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 78999999999999999999988765
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-35 Score=243.29 Aligned_cols=137 Identities=18% Similarity=0.132 Sum_probs=106.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
++++.|. +.++|+||||+ +++||+++|+| ||||||||| ++++.|+.+| .++...+.. ++++
T Consensus 8 ~l~~~y~---~~~vl~~vsl~-i~~Ge~~~llG-pnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 8 NLKKYFG---KVKAVDGVSFE-VKDGEFVALLG-PSGCGKTTT-LLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp EEEEEET---TEEEEEEEEEE-ECTTCEEEEEC-STTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEC---CEEEEeeeEEE-EcCCCEEEEEc-CCCchHHHH-HHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 5778884 35799999999 99999999999 999999999 7888898877 133333322 3445
Q ss_pred cccCCCcccc----------cCCC--C--------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAF----------LGPE--N--------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+| ++.. . +.+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 80 v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L----~~~~~r~~~~LSgGq~QRvalArAL~---- 149 (359)
T 2yyz_A 80 VFQNY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI----DNLLDRKPTQLSGGQQQRVALARALV---- 149 (359)
T ss_dssp ECSSC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTC----GGGTTSCGGGSCHHHHHHHHHHHHHT----
T ss_pred EecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----chHhcCChhhCCHHHHHHHHHHHHHH----
Confidence 66665 222 1111 0 11346677777 78889999999999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|+++|||||||+||+..+.++.+.
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~ 175 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDANLRMIMRAE 175 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHH
Confidence 88999999999999999999988765
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-34 Score=230.67 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=107.7
Q ss_pred cceeeCCCCCC--CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccC--HHHHHHhc--c
Q psy17517 8 AQAFLGPENPE--EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLG--LEDLRSMA--L 77 (163)
Q Consensus 8 ~~~f~y~~~~~--~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~--~~~~~~~~--~ 77 (163)
+++|.|+.++. +++|+||||+ |++||+++|+| ||||||||| ++++.|+.+| +. +.+.+ ..++++++ +
T Consensus 7 ~l~~~y~~~~~~~~~vl~~vsl~-i~~Ge~~~liG-~nGsGKSTL-l~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v 83 (266)
T 2yz2_A 7 NVSHIFHRGTPLEKKALENVSLV-INEGECLLVAG-NTGSGKSTL-LQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIA 83 (266)
T ss_dssp EEEEEESTTSTTCEEEEEEEEEE-ECTTCEEEEEC-STTSSHHHH-HHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEE
T ss_pred EEEEEecCCCccccceeeeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCCcEEEECCEECchHHhhhhEEEE
Confidence 57888862211 4699999999 99999999999 999999999 6778888877 22 22211 11455555 6
Q ss_pred ccCCCcccc---------cCC----CC-C----chhHHHhchhcccCC--CccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 78 AQNQSAQAF---------LGP----EN-P----EEPYLQGVNYNCVAP--GKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 78 ~q~~~~~~~---------~~~----~~-~----~~~~~~~~~~~~~~~--~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
+|++...++ +.. .. . .+++++.+++ . +..++++.+||||||||++|||||+ +
T Consensus 84 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~~~LSgGq~qRv~lAraL~----~ 155 (266)
T 2yz2_A 84 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGL----DFDSFKDRVPFFLSGGEKRRVAIASVIV----H 155 (266)
T ss_dssp CSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTC----CHHHHTTCCGGGSCHHHHHHHHHHHHHT----T
T ss_pred eccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCc----CCcccccCChhhCCHHHHHHHHHHHHHH----c
Confidence 666422222 111 11 1 1235666776 6 7788999999999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
+|+++||||||++||+.++..+.+.|
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l 181 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIV 181 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHH
Confidence 89999999999999999999988753
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.4e-35 Score=240.32 Aligned_cols=136 Identities=21% Similarity=0.170 Sum_probs=106.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
++++.|++ . +|+||||+ |++||+++|+| ||||||||| ++++.|+..| + ++...+. .++++
T Consensus 6 ~l~~~y~~---~-~l~~vsl~-i~~Ge~~~llG-pnGsGKSTL-Lr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 6 SLSRKWKN---F-SLDNLSLK-VESGEYFVILG-PTGAGKTLF-LELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEECSS---C-EEEEEEEE-ECTTCEEEEEC-CCTHHHHHH-HHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEECC---E-EEeeeEEE-EcCCCEEEEEC-CCCccHHHH-HHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 57888942 5 99999999 99999999999 999999999 7888898877 1 2333332 34555
Q ss_pred cccCCCccccc---------------CCC--CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy17517 77 LAQNQSAQAFL---------------GPE--NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPA 139 (163)
Q Consensus 77 ~~q~~~~~~~~---------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p 139 (163)
+||++ .+|. ... .+.+++++.+++ .+..++++.+|||||||||+|||||+ .+|
T Consensus 77 v~Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L----~~~~~~~~~~LSgGq~QRvalAraL~----~~P 146 (348)
T 3d31_A 77 VYQNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI----EHLLDRNPLTLSGGEQQRVALARALV----TNP 146 (348)
T ss_dssp ECTTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC----TTTTTSCGGGSCHHHHHHHHHHHHTT----SCC
T ss_pred EecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCC----chHhcCChhhCCHHHHHHHHHHHHHH----cCC
Confidence 66664 2331 111 112346677777 78889999999999999999999995 889
Q ss_pred CEEEeecccCCCCHHHHHHHHhh
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++|||||||+||+..+.++.+.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~ 169 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREM 169 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHH
Confidence 99999999999999999998765
No 23
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.3e-34 Score=248.86 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=111.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.|+++ +.++|+|+||+ +++||+++++| ||||||||| ++++.++++| .++.+.+..++|+++
T Consensus 346 ~v~~~y~~~-~~~~l~~isl~-i~~Ge~~~ivG-~sGsGKSTl-l~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 421 (587)
T 3qf4_A 346 NVEFRYFEN-TDPVLSGVNFS-VKPGSLVAVLG-ETGSGKSTL-MNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISA 421 (587)
T ss_dssp EEEECSSSS-SCCSEEEEEEE-ECTTCEEEEEC-SSSSSHHHH-HHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEE
T ss_pred EEEEEcCCC-CCcceeceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEE
Confidence 678999753 46899999999 99999999999 999999999 7788898887 356677778888888
Q ss_pred cccCCCcccc----------cCCCCCchhH---HHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAF----------LGPENPEEPY---LQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+| .......+++ ++..++. .+.+...++++.+||||||||++|||||+
T Consensus 422 v~Q~~--~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~---- 495 (587)
T 3qf4_A 422 VPQET--VLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV---- 495 (587)
T ss_dssp ECSSC--CCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH----
T ss_pred ECCCC--cCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH----
Confidence 55554 333 1222222222 2222210 01245567889999999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++++||||||+||+.++.++.+.
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~ 521 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDG 521 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHH
Confidence 88999999999999999999998874
No 24
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-34 Score=238.33 Aligned_cols=137 Identities=17% Similarity=0.087 Sum_probs=106.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+.++.|. +.++|+||||+ |++||+++|+| ||||||||| ++++.|+..| .++...+.. ++.+
T Consensus 8 ~l~~~y~---~~~vl~~vsl~-i~~Ge~~~llG-pnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 8 NIVKKFG---NFTALNNINLK-IKDGEFMALLG-PSGSGKSTL-LYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp EEEEESS---SSEEEEEEEEE-ECTTCEEEEEC-CTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred eEEEEEC---CEEEEEeeEEE-ECCCCEEEEEC-CCCchHHHH-HHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 6788894 35799999999 99999999999 999999999 7788898877 123333322 3445
Q ss_pred cccCCCcccccC---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAFLG---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+|.. ... +.+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 80 v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L----~~~~~r~~~~LSGGq~QRvalArAL~---- 149 (362)
T 2it1_A 80 VFQNW--ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI----DKLLNRYPWQLSGGQQQRVAIARALV---- 149 (362)
T ss_dssp ECTTC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC----TTCTTCCGGGSCHHHHHHHHHHHHHT----
T ss_pred EecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----chHhhCChhhCCHHHHHHHHHHHHHH----
Confidence 66665 22210 000 11235667777 78889999999999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|+++|||||||+||+..+.++.+.
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~ 175 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAE 175 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHH
Confidence 88999999999999999999998765
No 25
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=8.7e-35 Score=228.91 Aligned_cols=144 Identities=22% Similarity=0.272 Sum_probs=102.7
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~~~~~~~~~-- 76 (163)
+++|.|++ +.++|+||||+ |++||+++|+| ||||||||| ++++.++.+| + ++...+..++++++
T Consensus 6 ~l~~~y~~--~~~vl~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 6 HVDFAYDD--SEQILRDISFE-AQPNSIIAFAG-PSGGGKSTI-FSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEECSSS--SSCSEEEEEEE-ECTTEEEEEEC-CTTSSHHHH-HHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEeCC--CCceEEEeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 67889952 36799999999 99999999999 999999999 7788888877 1 22222223345555
Q ss_pred cccCCCcccc---------cC--CCCCc---hhHHHhchhccc-------CCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 LAQNQSAQAF---------LG--PENPE---EPYLQGVNYNCV-------APGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 ~~q~~~~~~~---------~~--~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
++|++ .+| +. ..... +++++.+++... .....++++.+||||||||++|||||+
T Consensus 81 v~q~~--~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~--- 155 (243)
T 1mv5_A 81 VSQDS--AIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL--- 155 (243)
T ss_dssp ECCSS--CCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH---
T ss_pred EcCCC--ccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh---
Confidence 55654 222 11 11111 123444454111 012234567899999999999999996
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|+++||||||++||+.++..+.+.
T Consensus 156 -~~p~lllLDEPts~LD~~~~~~i~~~ 181 (243)
T 1mv5_A 156 -RNPKILMLDEATASLDSESESMVQKA 181 (243)
T ss_dssp -HCCSEEEEECCSCSSCSSSCCHHHHH
T ss_pred -cCCCEEEEECCcccCCHHHHHHHHHH
Confidence 67999999999999999998888764
No 26
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.5e-35 Score=242.96 Aligned_cols=137 Identities=14% Similarity=0.054 Sum_probs=104.9
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
++++.|+ +.++|+||||+ |++||+++|+| ||||||||| ++++.|+..| .++...+.. ++++
T Consensus 16 ~l~~~y~---~~~vl~~vsl~-i~~Ge~~~llG-pnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 87 (372)
T 1v43_A 16 NLTKRFG---NFTAVNKLNLT-IKDGEFLVLLG-PSGCGKTTT-LRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87 (372)
T ss_dssp EEEEEET---TEEEEEEEEEE-ECTTCEEEEEC-CTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred EEEEEEC---CEEEEeeeEEE-ECCCCEEEEEC-CCCChHHHH-HHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence 6788885 35799999999 99999999999 999999999 7888898877 123333322 3445
Q ss_pred cccCCCcccc----------cCCCC----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAF----------LGPEN----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
+||++ .+| ++... +.+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 88 v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L----~~~~~r~~~~LSGGq~QRvalArAL~---- 157 (372)
T 1v43_A 88 VFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI----EELLNRYPAQLSGGQRQRVAVARAIV---- 157 (372)
T ss_dssp EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC----GGGTTSCTTTCCSSCHHHHHHHHHHT----
T ss_pred EecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----hhHhcCChhhCCHHHHHHHHHHHHHh----
Confidence 66665 222 12111 11235667777 78889999999999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|+++|||||||+||+..+.++.+.
T Consensus 158 ~~P~lLLLDEP~s~LD~~~r~~l~~~ 183 (372)
T 1v43_A 158 VEPDVLLMDEPLSNLDAKLRVAMRAE 183 (372)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 88999999999999999999988765
No 27
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-34 Score=223.37 Aligned_cols=137 Identities=18% Similarity=0.137 Sum_probs=103.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCHHHHHHhc--cccCC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGLEDLRSMA--LAQNQ 81 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~~~~~~~~--~~q~~ 81 (163)
+++|.|+ + ++|+||||+ |++||+++|+| ||||||||| ++++.++.+| +. +.+.+...+++.+ ++|++
T Consensus 15 ~ls~~y~---~-~il~~vsl~-i~~Ge~~~iiG-~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 15 DLSVGYD---K-PVLERITMT-IEKGNVVNFHG-PNGIGKTTL-LKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp EEEEESS---S-EEEEEEEEE-EETTCCEEEEC-CTTSSHHHH-HHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred EEEEEeC---C-eEEeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 6788894 3 799999999 99999999999 999999999 6778888877 22 2222211234555 55554
Q ss_pred Cccccc---------------CCCCC---chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEE
Q psy17517 82 SAQAFL---------------GPENP---EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143 (163)
Q Consensus 82 ~~~~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lll 143 (163)
. +|. ..... .+++++.+++ .+. ++++.+||||||||++|||||+ .+|+++|
T Consensus 88 ~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl----~~~-~~~~~~LSgGqkqrv~laraL~----~~p~lll 156 (214)
T 1sgw_A 88 I--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV----LDL-KKKLGELSQGTIRRVQLASTLL----VNAEIYV 156 (214)
T ss_dssp C--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC----CCT-TSBGGGSCHHHHHHHHHHHHTT----SCCSEEE
T ss_pred c--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCC----CcC-CCChhhCCHHHHHHHHHHHHHH----hCCCEEE
Confidence 2 221 10111 1235666666 566 8899999999999999999995 8899999
Q ss_pred eecccCCCCHHHHHHHHhh
Q psy17517 144 LDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 144 LDEPts~LD~~~~~~i~~~ 162 (163)
|||||++||+.++.++.+.
T Consensus 157 LDEPts~LD~~~~~~l~~~ 175 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKS 175 (214)
T ss_dssp EESTTTTSCTTTHHHHHHH
T ss_pred EECCCcCCCHHHHHHHHHH
Confidence 9999999999999998875
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7e-35 Score=230.98 Aligned_cols=137 Identities=25% Similarity=0.291 Sum_probs=104.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCCc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQSA 83 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~~ 83 (163)
+++|.|+. +.++|+||||+ |++||+++|+| ||||||||| ++++.++.+| +.+. +++++ ++|++..
T Consensus 9 ~l~~~y~~--~~~vl~~isl~-i~~Ge~~~l~G-~nGsGKSTL-l~~l~Gl~~p~~G~I~------~~~~i~~v~q~~~~ 77 (253)
T 2nq2_C 9 NLGFYYQA--ENFLFQQLNFD-LNKGDILAVLG-QNGCGKSTL-LDLLLGIHRPIQGKIE------VYQSIGFVPQFFSS 77 (253)
T ss_dssp EEEEEETT--TTEEEEEEEEE-EETTCEEEEEC-CSSSSHHHH-HHHHTTSSCCSEEEEE------ECSCEEEECSCCCC
T ss_pred eEEEEeCC--CCeEEEEEEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEE------EeccEEEEcCCCcc
Confidence 57888852 35799999999 99999999999 999999999 7788888877 4444 22334 5555421
Q ss_pred c---------cccCC---C----CC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCE
Q psy17517 84 Q---------AFLGP---E----NP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPF 141 (163)
Q Consensus 84 ~---------~~~~~---~----~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~l 141 (163)
. .+... . .. .+++++.+++ .+..++++.+||||||||++|||||+ ++|++
T Consensus 78 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qrv~lAraL~----~~p~l 149 (253)
T 2nq2_C 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL----THLAKREFTSLSGGQRQLILIARAIA----SECKL 149 (253)
T ss_dssp SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTC----GGGTTSBGGGSCHHHHHHHHHHHHHH----TTCSE
T ss_pred CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCC----hHHhcCChhhCCHHHHHHHHHHHHHH----cCCCE
Confidence 1 11100 0 01 1235566666 67788899999999999999999996 78999
Q ss_pred EEeecccCCCCHHHHHHHHhhC
Q psy17517 142 FVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 142 llLDEPts~LD~~~~~~i~~~l 163 (163)
+||||||++||+.++..+.+.|
T Consensus 150 llLDEPts~LD~~~~~~l~~~l 171 (253)
T 2nq2_C 150 ILLDEPTSALDLANQDIVLSLL 171 (253)
T ss_dssp EEESSSSTTSCHHHHHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHH
Confidence 9999999999999999988753
No 29
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.7e-35 Score=241.92 Aligned_cols=139 Identities=19% Similarity=0.145 Sum_probs=106.0
Q ss_pred cceeeCCCCCCCC--cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------ccccc---CHHHHH
Q psy17517 8 AQAFLGPENPEEP--YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSL---GLEDLR 73 (163)
Q Consensus 8 ~~~f~y~~~~~~~--~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~---~~~~~~ 73 (163)
++++.|++ .+ +|+||||+ |++||+++|+| ||||||||| ++++.|+..| + ++... .....+
T Consensus 8 ~l~~~y~~---~~~~vl~~vsl~-i~~Ge~~~llG-pnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 8 NVSKVFKK---GKVVALDNVNIN-IENGERFGILG-PSGAGKTTF-MRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp EEEEEEGG---GTEEEEEEEEEE-ECTTCEEEEEC-SCHHHHHHH-HHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred eEEEEECC---EeeeeEeceEEE-ECCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 57788843 57 99999999 99999999999 999999999 7788888877 1 22220 011224
Q ss_pred Hhc--cccCCCcccc----------cCCCC----------CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 74 SMA--LAQNQSAQAF----------LGPEN----------PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 74 ~~~--~~q~~~~~~~----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
+++ +||++ .+| ++... +.+++++.+++ .+..++++.+|||||||||+|||||
T Consensus 82 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L----~~~~~~~~~~LSGGq~QRvalAraL 155 (353)
T 1oxx_K 82 RKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI----HHVLNHFPRELSGAQQQRVALARAL 155 (353)
T ss_dssp SCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC----GGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----chHhcCChhhCCHHHHHHHHHHHHH
Confidence 445 66665 222 11111 11235667777 7788999999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+ .+|+++|||||||+||+..+.++.+.
T Consensus 156 ~----~~P~lLLLDEP~s~LD~~~r~~l~~~ 182 (353)
T 1oxx_K 156 V----KDPSLLLLDEPFSNLDARMRDSARAL 182 (353)
T ss_dssp T----TCCSEEEEESTTTTSCGGGHHHHHHH
T ss_pred H----hCCCEEEEECCcccCCHHHHHHHHHH
Confidence 5 78999999999999999999998875
No 30
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.4e-34 Score=247.83 Aligned_cols=145 Identities=23% Similarity=0.324 Sum_probs=110.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.|++. +.++|+|+||+ +++||+++++| ||||||||| ++++.++++| .++.+.+..++|+++
T Consensus 344 ~v~~~y~~~-~~~~l~~isl~-i~~G~~~~ivG-~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~ 419 (578)
T 4a82_A 344 HVSFQYNDN-EAPILKDINLS-IEKGETVAFVG-MSGGGKSTL-INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419 (578)
T ss_dssp EEEECSCSS-SCCSEEEEEEE-ECTTCEEEEEC-STTSSHHHH-HTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred EEEEEcCCC-CCcceeeeEEE-ECCCCEEEEEC-CCCChHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 678999853 46899999999 99999999999 999999999 7788999887 356677778888887
Q ss_pred cccCCCcccc----------cCCCCCchhH---HHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAF----------LGPENPEEPY---LQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+| ..+....+++ ++.+++. .+.+...++++.+||||||||++|||||+
T Consensus 420 v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~---- 493 (578)
T 4a82_A 420 VQQDN--ILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL---- 493 (578)
T ss_dssp ECSSC--CCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH----
T ss_pred EeCCC--ccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH----
Confidence 55554 333 2222222222 2222220 01134556778899999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++++||||||+||+.++..+.+.
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~ 519 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEA 519 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHH
Confidence 78999999999999999999988764
No 31
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.2e-34 Score=238.41 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=106.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccc------cCHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRS------LGLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~------~~~~~~ 72 (163)
++++.|+ +.++|+||||+ |++||+++|+| ||||||||| ++++.|+..| + ++.. .+..
T Consensus 8 ~l~~~y~---~~~vl~~vsl~-i~~Ge~~~llG-pnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~-- 79 (372)
T 1g29_1 8 DVWKVFG---EVTAVREMSLE-VKDGEFMILLG-PSGCGKTTT-LRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK-- 79 (372)
T ss_dssp EEEEEET---TEEEEEEEEEE-EETTCEEEEEC-STTSSHHHH-HHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--
T ss_pred eEEEEEC---CEEEEeeeEEE-EcCCCEEEEEC-CCCcHHHHH-HHHHHcCCCCCccEEEECCEECccccccccCCHh--
Confidence 5778884 35799999999 99999999999 999999999 7788898877 1 2222 2222
Q ss_pred HHhc--cccCCCcccccC---------------CCC-----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH
Q psy17517 73 RSMA--LAQNQSAQAFLG---------------PEN-----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130 (163)
Q Consensus 73 ~~~~--~~q~~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra 130 (163)
++++ +||++ .+|.. ... +.+++++.+++ .+..++++.+|||||||||+||||
T Consensus 80 ~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L----~~~~~r~~~~LSGGq~QRvalArA 153 (372)
T 1g29_1 80 DRDIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL----TELLNRKPRELSGGQRQRVALGRA 153 (372)
T ss_dssp GSSEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC----GGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HCCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----chHhcCCcccCCHHHHHHHHHHHH
Confidence 3445 66664 23310 000 11235666777 778899999999999999999999
Q ss_pred HHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 131 FAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 131 L~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+ .+|+++|||||||+||+..+.++.+.
T Consensus 154 L~----~~P~lLLLDEP~s~LD~~~r~~l~~~ 181 (372)
T 1g29_1 154 IV----RKPQVFLMDEPLSNLDAKLRVRMRAE 181 (372)
T ss_dssp HH----TCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred Hh----cCCCEEEECCCCccCCHHHHHHHHHH
Confidence 96 78999999999999999999988765
No 32
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.1e-34 Score=266.59 Aligned_cols=147 Identities=27% Similarity=0.315 Sum_probs=117.4
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA- 76 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~- 76 (163)
.+++|+||+.++.++|+||||+ |++||.+|||| +|||||||| .+++.++++| .++++++.+++|+++
T Consensus 1080 ~nVsf~Y~~~~~~~VL~~isl~-I~~Ge~vaIVG-~SGsGKSTL-~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~ 1156 (1321)
T 4f4c_A 1080 KNVRFAYPERPEIEILKGLSFS-VEPGQTLALVG-PSGCGKSTV-VALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIA 1156 (1321)
T ss_dssp EEEEECCTTSCSSCSEEEEEEE-ECTTCEEEEEC-STTSSTTSH-HHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEE
T ss_pred EEEEEeCCCCCCCccccceeEE-ECCCCEEEEEC-CCCChHHHH-HHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 3789999987778899999999 99999999999 999999999 7889999988 467889999999998
Q ss_pred -cccCCCcccc---------cCC---CCCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 77 -LAQNQSAQAF---------LGP---ENPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 77 -~~q~~~~~~~---------~~~---~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
|+|+| .+| ++. +..+++ +++.+++. .+.+....+.+.+||||||||+||||||
T Consensus 1157 ~V~Qdp--~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl-- 1232 (1321)
T 4f4c_A 1157 IVSQEP--TLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL-- 1232 (1321)
T ss_dssp EECSSC--CCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH--
T ss_pred EECCCC--EeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH--
Confidence 56665 333 122 223333 33333331 1123445667889999999999999999
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++|++||||||||+||++++..|++.
T Consensus 1233 --lr~~~ILiLDEaTSaLD~~tE~~Iq~~ 1259 (1321)
T 4f4c_A 1233 --VRNPKILLLDEATSALDTESEKVVQEA 1259 (1321)
T ss_dssp --HSCCSEEEEESCCCSTTSHHHHHHHHH
T ss_pred --HhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 489999999999999999999998764
No 33
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.2e-34 Score=225.00 Aligned_cols=141 Identities=23% Similarity=0.204 Sum_probs=98.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc--ccc---------ccccccCHHHHHH-h
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI--HRI---------ATIRSLGLEDLRS-M 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l--~~~---------~~i~~~~~~~~~~-~ 75 (163)
+++|.|++ .++|+||||+ |++||+++|+| ||||||||| ++++.++ ..| .++...+..+.++ .
T Consensus 8 ~l~~~y~~---~~vl~~vsl~-i~~Ge~~~l~G-~nGsGKSTL-lk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 8 DLWASIDG---ETILKGVNLV-VPKGEVHALMG-PNGAGKSTL-GKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEETT---EEEEEEEEEE-EETTCEEEEEC-STTSSHHHH-HHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEECC---EEEEeceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 67888953 5799999999 99999999999 999999999 6777776 444 1333344444333 3
Q ss_pred c--cccCCCccccc----------------CCCCC-------chhHHHhchhcccCCCccCCCCCC-CCHHHHHHHHHHH
Q psy17517 76 A--LAQNQSAQAFL----------------GPENP-------EEPYLQGVNYNCVAPGKRFQPMTN-LSGGEKTVAALAL 129 (163)
Q Consensus 76 ~--~~q~~~~~~~~----------------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-LSgGqkQrvaiAr 129 (163)
+ ++|++. +|. ..... .+++++.+++. .+..++++.+ ||||||||++|||
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 82 LFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD---ESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp BCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC---GGGGGSBTTCC----HHHHHHHHH
T ss_pred EEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC---hhHhcCCcccCCCHHHHHHHHHHH
Confidence 4 566652 221 00000 11244445541 2567888898 9999999999999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||+ ++|+++||||||++||+.++..+.++|
T Consensus 157 aL~----~~p~lllLDEPts~LD~~~~~~l~~~l 186 (250)
T 2d2e_A 157 LLV----LEPTYAVLDETDSGLDIDALKVVARGV 186 (250)
T ss_dssp HHH----HCCSEEEEECGGGTTCHHHHHHHHHHH
T ss_pred HHH----cCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 996 679999999999999999999988753
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.6e-33 Score=224.65 Aligned_cols=142 Identities=22% Similarity=0.240 Sum_probs=101.8
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc--cc--c-------cccccCHHHH-HHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH--RI--A-------TIRSLGLEDL-RSM 75 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~--~~--~-------~i~~~~~~~~-~~~ 75 (163)
+++|.|+ ++++|+||||+ |++||+++|+| ||||||||| ++++.++. .| + ++...+.... +..
T Consensus 25 ~l~~~y~---~~~vl~~vsl~-i~~Ge~~~l~G-~NGsGKSTL-lk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 25 DLHVSVE---DKAILRGLSLD-VHPGEVHAIMG-PNGSGKSTL-SATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp EEEEEET---TEEEEEEEEEE-ECTTCEEEEEC-CTTSSHHHH-HHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEEC---CEEEEEeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 6788884 35799999999 99999999999 999999999 67777773 34 1 2333344443 233
Q ss_pred c--cccCCCcc---------cc--------cCCCC-C-------chhHHHhchhcccCC-CccCCCCC-CCCHHHHHHHH
Q psy17517 76 A--LAQNQSAQ---------AF--------LGPEN-P-------EEPYLQGVNYNCVAP-GKRFQPMT-NLSGGEKTVAA 126 (163)
Q Consensus 76 ~--~~q~~~~~---------~~--------~~~~~-~-------~~~~~~~~~~~~~~~-~~~~~~~~-~LSgGqkQrva 126 (163)
+ ++|++... .+ ..... . .+++++.+++ . ...++++. +||||||||++
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM----PEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTC----CTTTTTSBTTTTCCHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCC----ChhHhcCCcccCCCHHHHHHHH
Confidence 4 56665210 00 00000 0 1234555555 4 45678886 59999999999
Q ss_pred HHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 127 LALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 127 iAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
|||||+ ++|+++||||||++||+.++..+.++|
T Consensus 175 iAraL~----~~p~lLlLDEPts~LD~~~~~~l~~~l 207 (267)
T 2zu0_C 175 ILQMAV----LEPELCILDESDSGLDIDALKVVADGV 207 (267)
T ss_dssp HHHHHH----HCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 999996 679999999999999999999988753
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-34 Score=224.98 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=102.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccC---HHHHHHhc--cc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLG---LEDLRSMA--LA 78 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~---~~~~~~~~--~~ 78 (163)
+++|.|+. +|+||||+ +++ |+++|+| ||||||||| ++++.|+.+| +. +.+.+ ....++++ ++
T Consensus 6 ~l~~~y~~-----~l~~isl~-i~~-e~~~liG-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 6 RAEKRLGN-----FRLNVDFE-MGR-DYCVLLG-PTGAGKSVF-LELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp EEEEEETT-----EEEEEEEE-ECS-SEEEEEC-CTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred EEEEEeCC-----EEeeeEEE-ECC-EEEEEEC-CCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 57888842 59999999 999 9999999 999999999 6778888877 22 11111 11223445 55
Q ss_pred cCCCccccc----------CCCCC--------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy17517 79 QNQSAQAFL----------GPENP--------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP 140 (163)
Q Consensus 79 q~~~~~~~~----------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~ 140 (163)
|++ .++. ..... .+++++.+++ .+..++++.+||||||||++|||||+ ++|+
T Consensus 77 q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqRv~lAral~----~~p~ 146 (240)
T 2onk_A 77 QDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI----AHLLDRKPARLSGGERQRVALARALV----IQPR 146 (240)
T ss_dssp SSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC----TTTTTCCGGGSCHHHHHHHHHHHHHT----TCCS
T ss_pred CCC--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCC----HHHhcCChhhCCHHHHHHHHHHHHHH----cCCC
Confidence 554 2221 11110 1235666666 67788999999999999999999995 8899
Q ss_pred EEEeecccCCCCHHHHHHHHhhC
Q psy17517 141 FFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 141 lllLDEPts~LD~~~~~~i~~~l 163 (163)
++||||||++||+.++..+.+.|
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l 169 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEEL 169 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHH
Confidence 99999999999999999988753
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.8e-33 Score=244.44 Aligned_cols=146 Identities=27% Similarity=0.260 Sum_probs=110.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.|++.++.++|+|+||+ +++||+++|+| ||||||||| ++++.++++| .++.+.+..++|+++
T Consensus 346 ~v~~~y~~~~~~~vl~~isl~-i~~G~~~~ivG-~sGsGKSTL-l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 422 (595)
T 2yl4_A 346 NVHFAYPARPEVPIFQDFSLS-IPSGSVTALVG-PSGSGKSTV-LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGT 422 (595)
T ss_dssp EEEEECSSCTTSEEEEEEEEE-ECTTCEEEEEC-CTTSSSTHH-HHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEE
T ss_pred EEEEEeCCCCCCccccceEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEE
Confidence 678999754345799999999 99999999999 999999999 7788999887 245566677788777
Q ss_pred cccCCCcccc---------cC-CC---CCch---hHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy17517 77 LAQNQSAQAF---------LG-PE---NPEE---PYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAI 133 (163)
Q Consensus 77 ~~q~~~~~~~---------~~-~~---~~~~---~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~ 133 (163)
++|++ .+| ++ .. ...+ ++++.+++.. +.+...++++.+||||||||++|||||+
T Consensus 423 v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~- 499 (595)
T 2yl4_A 423 VSQEP--ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL- 499 (595)
T ss_dssp ECSSC--CCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH-
T ss_pred EccCC--cccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH-
Confidence 56655 232 11 11 1222 2344444310 1133455677999999999999999996
Q ss_pred cccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 134 HSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 134 ~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++++||||||+||+.++.++.+.
T Consensus 500 ---~~p~illlDEpts~LD~~~~~~i~~~ 525 (595)
T 2yl4_A 500 ---KNPKILLLDEATSALDAENEYLVQEA 525 (595)
T ss_dssp ---HCCSEEEEECCCSSCCHHHHHHHHHH
T ss_pred ---cCCCEEEEECcccCCCHHHHHHHHHH
Confidence 78999999999999999999998775
No 37
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-33 Score=245.19 Aligned_cols=144 Identities=19% Similarity=0.284 Sum_probs=108.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.|++ +.++|+|+||+ +++||+++|+| ||||||||| ++++.++++| .++.+.+..++|+++
T Consensus 359 ~v~~~y~~--~~~~l~~isl~-i~~G~~~~ivG-~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 359 NVWFSYDK--KKPVLKDITFH-IKPGQKVALVG-PTGSGKTTI-VNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp EEECCSSS--SSCSCCSEEEE-CCTTCEEEEEC-CTTSSTTHH-HHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEECCC--CCccccceEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 67889964 46799999999 99999999999 999999999 7788999887 356677788888887
Q ss_pred cccCCCcccc----------cCCCCCchhHHH---hchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAF----------LGPENPEEPYLQ---GVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|++ .+| .......+++.+ .+++. .+.+...++.+.+||||||||++|||||+
T Consensus 434 v~Q~~--~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~---- 507 (598)
T 3qf4_B 434 VLQDT--ILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL---- 507 (598)
T ss_dssp ECTTC--CCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH----
T ss_pred EeCCC--ccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh----
Confidence 55655 333 112222222222 22220 01122334556899999999999999995
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++++||||||+||+.++.++.+.
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~ 533 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAA 533 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHH
Confidence 88999999999999999999998764
No 38
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.7e-33 Score=262.26 Aligned_cols=148 Identities=25% Similarity=0.305 Sum_probs=118.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|+||+.++.++|+||||+ |++||.++|+| ||||||||| ++++.++++| .++++.+..++|+++
T Consensus 420 nvsF~Y~~~~~~~vL~~isl~-i~~G~~vaivG-~sGsGKSTl-l~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~ 496 (1321)
T 4f4c_A 420 NVHFTYPSRPDVPILRGMNLR-VNAGQTVALVG-SSGCGKSTI-ISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAV 496 (1321)
T ss_dssp EEEECCSSSTTSCSEEEEEEE-ECTTCEEEEEE-CSSSCHHHH-HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EeeeeCCCCCCCceeeceEEe-ecCCcEEEEEe-cCCCcHHHH-HHHhccccccccCcccCCCccchhccHHHHhhcccc
Confidence 789999987788999999999 99999999999 999999999 7888999988 467888999999998
Q ss_pred cccCC--------CcccccCCCCCchhHHHhchhc----------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy17517 77 LAQNQ--------SAQAFLGPENPEEPYLQGVNYN----------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHP 138 (163)
Q Consensus 77 ~~q~~--------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~ 138 (163)
|.|+| +|..|..+....+++.+.+... .+......+.+.+||||||||++||||+ +++
T Consensus 497 v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl----~~~ 572 (1321)
T 4f4c_A 497 VSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL----VRN 572 (1321)
T ss_dssp ECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH----TTC
T ss_pred cCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH----ccC
Confidence 55555 2333333334444444333321 1223455678899999999999999999 589
Q ss_pred CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 139 APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 139 p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
|+++|||||||+||+.++..+.+.
T Consensus 573 ~~IliLDE~tSaLD~~te~~i~~~ 596 (1321)
T 4f4c_A 573 PKILLLDEATSALDAESEGIVQQA 596 (1321)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHH
T ss_pred CCEEEEecccccCCHHHHHHHHHH
Confidence 999999999999999998887764
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=220.64 Aligned_cols=144 Identities=19% Similarity=0.188 Sum_probs=100.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSA-- 83 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~-- 83 (163)
+++|.|+.. +.++|+||||+ |++||+++|+| ||||||||| ++++.++.+| +.+.-.. +..+++|++..
T Consensus 8 ~l~~~y~~~-~~~vl~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~~~~ 79 (237)
T 2cbz_A 8 NATFTWARS-DPPTLNGITFS-IPEGALVAVVG-QVGCGKSSL-LSALLAEMDKVEGHVAIKG----SVAYVPQQAWIQN 79 (237)
T ss_dssp EEEEESCTT-SCCSEEEEEEE-ECTTCEEEEEC-STTSSHHHH-HHHHTTCSEEEEEEEEECS----CEEEECSSCCCCS
T ss_pred EEEEEeCCC-CCceeeeeEEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCceEEECC----EEEEEcCCCcCCC
Confidence 678899632 36799999999 99999999999 999999999 7788888877 2322101 11235665521
Q ss_pred ------ccccCC-CC-CchhHHHhchhcc----c---CCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeeccc
Q psy17517 84 ------QAFLGP-EN-PEEPYLQGVNYNC----V---APGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEID 148 (163)
Q Consensus 84 ------~~~~~~-~~-~~~~~~~~~~~~~----~---~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPt 148 (163)
..+... .. ..+.+.+.+++.. . .....++++.+||||||||++|||||+ .+|+++||||||
T Consensus 80 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~----~~p~lllLDEPt 155 (237)
T 2cbz_A 80 DSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY----SNADIYLFDDPL 155 (237)
T ss_dssp EEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH----HCCSEEEEESTT
T ss_pred cCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCcc
Confidence 111111 11 1122233222210 0 012356789999999999999999996 679999999999
Q ss_pred CCCCHHHHHHHHhhC
Q psy17517 149 AALDNTNIGKVASYI 163 (163)
Q Consensus 149 s~LD~~~~~~i~~~l 163 (163)
++||+.++..+.+.|
T Consensus 156 s~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 156 SAVDAHVGKHIFENV 170 (237)
T ss_dssp TTSCHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHH
Confidence 999999999988754
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6e-33 Score=241.84 Aligned_cols=145 Identities=24% Similarity=0.288 Sum_probs=110.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.|+++ +.++|+|+||+ +++||+++|+| ||||||||| ++++.++++| .++.+.+..++|+++
T Consensus 346 ~v~~~y~~~-~~~~l~~v~~~-i~~G~~~~ivG-~sGsGKSTL-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b60_A 346 NVTFTYPGR-EVPALRNINLK-IPAGKTVALVG-RSGSGKSTI-ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421 (582)
T ss_dssp EEEECSSSS-SCCSEEEEEEE-ECTTCEEEEEE-CTTSSHHHH-HHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred EEEEEcCCC-CCccccceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeE
Confidence 678999742 26799999999 99999999999 999999999 7788898887 245566677788877
Q ss_pred cccCCCcccc---------cCC--CCCch---hHHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhcc
Q psy17517 77 LAQNQSAQAF---------LGP--ENPEE---PYLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135 (163)
Q Consensus 77 ~~q~~~~~~~---------~~~--~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~ 135 (163)
++|++ .+| ++. ....+ ++++.+++. .+.+...++++.+||||||||++|||||+
T Consensus 422 v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~--- 496 (582)
T 3b60_A 422 VSQNV--HLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL--- 496 (582)
T ss_dssp ECSSC--CCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH---
T ss_pred EccCC--cCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH---
Confidence 56655 232 121 22222 233333331 01244566788999999999999999996
Q ss_pred cCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 136 YHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 136 ~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++++||||||+||+.++.++.+.
T Consensus 497 -~~p~illlDEpts~LD~~~~~~i~~~ 522 (582)
T 3b60_A 497 -RDSPILILDEATSALDTESERAIQAA 522 (582)
T ss_dssp -HCCSEEEEETTTSSCCHHHHHHHHHH
T ss_pred -hCCCEEEEECccccCCHHHHHHHHHH
Confidence 78999999999999999999998765
No 41
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.8e-33 Score=241.47 Aligned_cols=147 Identities=24% Similarity=0.280 Sum_probs=109.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.|+++ +.++|+|+||+ +++||+++|+| ||||||||| ++++.++++| .++.+.+..++|+++
T Consensus 346 ~v~~~y~~~-~~~~l~~i~l~-i~~G~~~~ivG-~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b5x_A 346 DVTFTYQGK-EKPALSHVSFS-IPQGKTVALVG-RSGSGKSTI-ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421 (582)
T ss_pred EEEEEcCCC-CccccccceEE-ECCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence 678999743 26799999999 99999999999 999999999 7788888887 234455566777777
Q ss_pred cccCCC--------cccccC-CCCCch---hHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccC
Q psy17517 77 LAQNQS--------AQAFLG-PENPEE---PYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYH 137 (163)
Q Consensus 77 ~~q~~~--------~~~~~~-~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~ 137 (163)
++|++. |..+.. .....+ ++++.+++.. +.+...++++.+||||||||++|||||+ +
T Consensus 422 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~----~ 497 (582)
T 3b5x_A 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL----R 497 (582)
T ss_pred EcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH----c
Confidence 566551 111111 111222 2344444310 1134456678999999999999999995 8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 138 PAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 138 ~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|++++||||||+||+.++.++.+.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~ 522 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAA 522 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHH
Confidence 8999999999999999999998775
No 42
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.4e-33 Score=219.79 Aligned_cols=131 Identities=19% Similarity=0.208 Sum_probs=101.8
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-c-------cccccCHHHHHHhc--cccCCCccccc--
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-A-------TIRSLGLEDLRSMA--LAQNQSAQAFL-- 87 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~-------~i~~~~~~~~~~~~--~~q~~~~~~~~-- 87 (163)
++|+|+||+ |++||+++|+| ||||||||| ++++.|+.+| + ++...+..++++++ ++|++. ++.
T Consensus 14 ~vl~~vsl~-i~~Ge~~~liG-~NGsGKSTL-lk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~ 88 (249)
T 2qi9_C 14 TRLGPLSGE-VRAGEILHLVG-PNGAGKSTL-LARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQT--PPFAT 88 (249)
T ss_dssp TTEEEEEEE-EETTCEEEEEC-CTTSSHHHH-HHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCC--CCTTC
T ss_pred EEEeeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCc--cCCCC
Confidence 589999999 99999999999 999999999 6778888765 2 23334455666666 555542 221
Q ss_pred --------CCCC--C---chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC-------EEEeecc
Q psy17517 88 --------GPEN--P---EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP-------FFVLDEI 147 (163)
Q Consensus 88 --------~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~-------lllLDEP 147 (163)
.... . .+++++.+++ .+..++++.+||||||||++|||||+ ++|+ ++|||||
T Consensus 89 tv~e~l~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qrv~lAraL~----~~p~~~~~~~~lllLDEP 160 (249)
T 2qi9_C 89 PVWHYLTLHQHDKTRTELLNDVAGALAL----DDKLGRSTNQLSGGEWQRVRLAAVVL----QITPQANPAGQLLLLDEP 160 (249)
T ss_dssp BHHHHHHTTCSSTTCHHHHHHHHHHTTC----GGGTTSBGGGCCHHHHHHHHHHHHHH----HHCTTTCTTCCEEEESST
T ss_pred cHHHHHHHhhccCCcHHHHHHHHHHcCC----hhHhcCChhhCCHHHHHHHHHHHHHH----cCCCcCCCCCeEEEEECC
Confidence 1110 1 1235666776 67788999999999999999999997 5699 9999999
Q ss_pred cCCCCHHHHHHHHhhC
Q psy17517 148 DAALDNTNIGKVASYI 163 (163)
Q Consensus 148 ts~LD~~~~~~i~~~l 163 (163)
|++||+.++..+.+.|
T Consensus 161 ts~LD~~~~~~l~~~l 176 (249)
T 2qi9_C 161 MNSLDVAQQSALDKIL 176 (249)
T ss_dssp TTTCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH
Confidence 9999999999988753
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.98 E-value=2.9e-32 Score=212.87 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=98.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQA 85 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~ 85 (163)
+++|.|+.+ +.++|+||||+ |++||+++|+| ||||||||| ++++.++.+| +.+.-.. +..+++|++. +
T Consensus 11 ~l~~~y~~~-~~~il~~vsl~-i~~Ge~~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g----~i~~v~q~~~--~ 80 (229)
T 2pze_A 11 NVTAFWEEG-GTPVLKDINFK-IERGQLLAVAG-STGAGKTSL-LMMIMGELEPSEGKIKHSG----RISFCSQFSW--I 80 (229)
T ss_dssp EEEECSSTT-SCCSEEEEEEE-EETTCEEEEEC-CTTSSHHHH-HHHHTTSSCCSEEEEEECS----CEEEECSSCC--C
T ss_pred EEEEEeCCC-CceeeeeeEEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCcCCccEEEECC----EEEEEecCCc--c
Confidence 678899632 46899999999 99999999999 999999999 7788888877 2322111 1112555542 2
Q ss_pred c---------cCCCCCc---hhHHHhchhcc-------cCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeec
Q psy17517 86 F---------LGPENPE---EPYLQGVNYNC-------VAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE 146 (163)
Q Consensus 86 ~---------~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDE 146 (163)
| +...... ..+++.+++.. ......++++.+||||||||++|||||+ ++|+++||||
T Consensus 81 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~----~~p~lllLDE 156 (229)
T 2pze_A 81 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY----KDADLYLLDS 156 (229)
T ss_dssp CSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH----SCCSEEEEES
T ss_pred cCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh----cCCCEEEEEC
Confidence 2 1111111 11222222210 0011334567899999999999999996 7899999999
Q ss_pred ccCCCCHHHHHHHHhh
Q psy17517 147 IDAALDNTNIGKVASY 162 (163)
Q Consensus 147 Pts~LD~~~~~~i~~~ 162 (163)
||++||+.++..+.+.
T Consensus 157 Pts~LD~~~~~~i~~~ 172 (229)
T 2pze_A 157 PFGYLDVLTEKEIFES 172 (229)
T ss_dssp TTTTSCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHH
Confidence 9999999999999874
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=6.9e-33 Score=220.78 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=102.3
Q ss_pred cceeeCCCC-CCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--cc--ccccCH---HHHHHhc---
Q psy17517 8 AQAFLGPEN-PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--AT--IRSLGL---EDLRSMA--- 76 (163)
Q Consensus 8 ~~~f~y~~~-~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~--i~~~~~---~~~~~~~--- 76 (163)
+++|.|++. ..+++|+|+||+ ++ ||+++|+| ||||||||| ++++.++. | +. +.+.+. .. ++++
T Consensus 6 ~l~~~y~~~~~~~~il~~vsl~-i~-Ge~~~i~G-~NGsGKSTL-lk~l~Gl~-p~~G~I~~~g~~~~~~~~-~~~i~~~ 79 (263)
T 2pjz_A 6 NVGITLSGKGYERFSLENINLE-VN-GEKVIILG-PNGSGKTTL-LRAISGLL-PYSGNIFINGMEVRKIRN-YIRYSTN 79 (263)
T ss_dssp EEEEEEEEETTEEEEEEEEEEE-EC-SSEEEEEC-CTTSSHHHH-HHHHTTSS-CCEEEEEETTEEGGGCSC-CTTEEEC
T ss_pred EEEEEeCCCCccceeEEeeeEE-EC-CEEEEEEC-CCCCCHHHH-HHHHhCCC-CCCcEEEECCEECcchHH-hhheEEE
Confidence 567888531 115799999999 99 99999999 999999999 67788887 7 22 122111 11 3333
Q ss_pred cccCCCc-------ccccC--CCCC---chhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEE
Q psy17517 77 LAQNQSA-------QAFLG--PENP---EEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143 (163)
Q Consensus 77 ~~q~~~~-------~~~~~--~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lll 143 (163)
++|++.. ..+.. .... .+++++.+++ . +..++++.+||||||||++|||||+ ++|+++|
T Consensus 80 v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~~LSgGqkqRv~lAraL~----~~p~lll 151 (263)
T 2pjz_A 80 LPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKL----GEEILRRKLYKLSAGQSVLVRTSLALA----SQPEIVG 151 (263)
T ss_dssp CGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTC----CGGGGGSBGGGSCHHHHHHHHHHHHHH----TCCSEEE
T ss_pred eCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCC----ChhHhcCChhhCCHHHHHHHHHHHHHH----hCCCEEE
Confidence 4555432 00000 0111 1245666676 6 7788999999999999999999996 7899999
Q ss_pred eecccCCCCHHHHHHHHhhC
Q psy17517 144 LDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 144 LDEPts~LD~~~~~~i~~~l 163 (163)
|||||++||+.++..+.+.|
T Consensus 152 LDEPts~LD~~~~~~l~~~L 171 (263)
T 2pjz_A 152 LDEPFENVDAARRHVISRYI 171 (263)
T ss_dssp EECTTTTCCHHHHHHHHHHH
T ss_pred EECCccccCHHHHHHHHHHH
Confidence 99999999999999988753
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=8.3e-32 Score=251.69 Aligned_cols=146 Identities=23% Similarity=0.261 Sum_probs=112.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.||+.++.++|+||||+ |++||+++|+| ||||||||| ++++.++++| .++...+..++|+++
T Consensus 392 ~v~~~y~~~~~~~vL~~isl~-i~~G~~~~ivG-~sGsGKSTl-~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 468 (1284)
T 3g5u_A 392 NIHFSYPSRKEVQILKGLNLK-VKSGQTVALVG-NSGCGKSTT-VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468 (1284)
T ss_dssp EEEECCSSTTSCCSEEEEEEE-ECTTCEEEEEC-CSSSSHHHH-HHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEcCCCCCCcceecceEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEE
Confidence 678999875567899999999 99999999999 999999999 7888999887 356778888899887
Q ss_pred cccCCCcccc----------cCCCCCchhH---HHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc
Q psy17517 77 LAQNQSAQAF----------LGPENPEEPY---LQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY 136 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~ 136 (163)
++|+| .+| .......+++ ++..++. ...+...++++.+||||||||++|||||+
T Consensus 469 v~Q~~--~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~---- 542 (1284)
T 3g5u_A 469 VSQEP--VLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV---- 542 (1284)
T ss_dssp ECSSC--CCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH----
T ss_pred EcCCC--ccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh----
Confidence 56655 333 1222222222 2222110 11134556788999999999999999996
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|+++|||||||+||+.++..+.+.
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~ 568 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAA 568 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 78999999999999999998887764
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=9e-31 Score=244.72 Aligned_cols=146 Identities=25% Similarity=0.269 Sum_probs=111.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccCHHHHHHhc--
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLGLEDLRSMA-- 76 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~~~~~~~~~-- 76 (163)
+++|.||+.++.++|+||||+ |++||+++|+| ||||||||| ++++.++++| .+++..+.+++|+++
T Consensus 1035 ~v~~~y~~~~~~~~l~~vsl~-i~~Ge~v~ivG-~sGsGKSTl-~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 1111 (1284)
T 3g5u_A 1035 GVVFNYPTRPSIPVLQGLSLE-VKKGQTLALVG-SSGCGKSTV-VQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111 (1284)
T ss_dssp EEEBCCSCGGGCCSBSSCCEE-ECSSSEEEEEC-SSSTTHHHH-HHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEE
T ss_pred EEEEECCCCCCCeeecceeEE-EcCCCEEEEEC-CCCCCHHHH-HHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEE
Confidence 578999865556899999999 99999999999 999999999 7888999887 356677788888887
Q ss_pred cccCCCcccc----------cCCC--CCchh---HHHhchhc-------ccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy17517 77 LAQNQSAQAF----------LGPE--NPEEP---YLQGVNYN-------CVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134 (163)
Q Consensus 77 ~~q~~~~~~~----------~~~~--~~~~~---~~~~~~~~-------~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~ 134 (163)
++|++ .+| .... ...++ .++..++. ...+....+.+.+||||||||++|||||+
T Consensus 1112 v~Q~~--~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~-- 1187 (1284)
T 3g5u_A 1112 VSQEP--ILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV-- 1187 (1284)
T ss_dssp EESSC--CCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH--
T ss_pred ECCCC--ccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH--
Confidence 66665 333 1111 12222 22222221 01123445678899999999999999996
Q ss_pred ccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 135 SYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 135 ~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++|++||||||||+||+.++..+.+.
T Consensus 1188 --~~p~iLiLDEpTs~lD~~~~~~i~~~ 1213 (1284)
T 3g5u_A 1188 --RQPHILLLDEATSALDTESEKVVQEA 1213 (1284)
T ss_dssp --HCCSSEEEESCSSSCCHHHHHHHHHH
T ss_pred --cCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 78999999999999999999988765
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.96 E-value=7.9e-30 Score=205.67 Aligned_cols=131 Identities=20% Similarity=0.219 Sum_probs=88.6
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhccccCCCccccc--------C
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMALAQNQSAQAFL--------G 88 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~~~q~~~~~~~~--------~ 88 (163)
.++|++|||+ |++||+++|+| ||||||||| ++++.|+.+| +.+.-.. +..+++|++ .+|. .
T Consensus 51 ~~vl~~isl~-i~~Ge~~~i~G-~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g----~i~~v~Q~~--~l~~~tv~enl~~ 121 (290)
T 2bbs_A 51 TPVLKDINFK-IERGQLLAVAG-STGAGKTSL-LMMIMGELEPSEGKIKHSG----RISFCSQNS--WIMPGTIKENIIG 121 (290)
T ss_dssp CCSEEEEEEE-ECTTCEEEEEE-STTSSHHHH-HHHHTTSSCEEEEEEECCS----CEEEECSSC--CCCSSBHHHHHHT
T ss_pred ceEEEeeEEE-EcCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCCcEEEECC----EEEEEeCCC--ccCcccHHHHhhC
Confidence 5799999999 99999999999 999999999 7788888877 3332111 111255544 2221 1
Q ss_pred CCCCc---hhHHHhchhcc----c---CCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHH
Q psy17517 89 PENPE---EPYLQGVNYNC----V---APGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158 (163)
Q Consensus 89 ~~~~~---~~~~~~~~~~~----~---~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~ 158 (163)
..... ...++.+++.. . .....++++.+||||||||++|||||+ ++|+++||||||++||+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~----~~p~lllLDEPts~LD~~~~~~ 197 (290)
T 2bbs_A 122 VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY----KDADLYLLDSPFGYLDVLTEKE 197 (290)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHH----SCCSEEEEESTTTTCCHHHHHH
T ss_pred cccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHH----CCCCEEEEECCcccCCHHHHHH
Confidence 10011 11222222210 0 011234557899999999999999996 7899999999999999999999
Q ss_pred HHhh
Q psy17517 159 VASY 162 (163)
Q Consensus 159 i~~~ 162 (163)
+.+.
T Consensus 198 i~~~ 201 (290)
T 2bbs_A 198 IFES 201 (290)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=4.5e-29 Score=215.93 Aligned_cols=143 Identities=19% Similarity=0.115 Sum_probs=103.9
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc-----------cccCHHHHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI-----------RSLGLEDLR 73 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i-----------~~~~~~~~~ 73 (163)
.+++|.|++ ...++++|| + |++||+++|+| ||||||||| ++++.|+..| +.+ .+.......
T Consensus 25 ~~ls~~yg~--~~~~l~~vs-~-i~~Ge~~~LvG-~NGaGKSTL-lk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 25 EDCVHRYGV--NAFVLYRLP-V-VKEGMVVGIVG-PNGTGKSTA-VKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp CCEEEECST--TCCEEECCC-C-CCTTSEEEEEC-CTTSSHHHH-HHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred cCcEEEECC--ccccccCcC-c-CCCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 478899953 235899999 9 99999999999 999999999 6778888766 222 222222110
Q ss_pred -----H--hc--cccCCC--ccccc----------CCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 74 -----S--MA--LAQNQS--AQAFL----------GPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 74 -----~--~~--~~q~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
. .+ ++|... ...+. ....+.+++++.+++ ....++++.+|||||||||+|||||+
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl----~~~~~~~~~~LSgGekQRv~iAraL~ 174 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALEL----ENVLEREIQHLSGGELQRVAIAAALL 174 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTC----TTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCC----ChhhhCChhhCCHHHHHHHHHHHHHh
Confidence 0 11 223211 00000 111234557788887 67889999999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|++|||||||++||+.++.++.++|
T Consensus 175 ----~~P~lLlLDEPTs~LD~~~~~~l~~~L 201 (538)
T 1yqt_A 175 ----RNATFYFFDEPSSYLDIRQRLNAARAI 201 (538)
T ss_dssp ----SCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ----cCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=6.2e-29 Score=217.68 Aligned_cols=143 Identities=21% Similarity=0.124 Sum_probs=104.7
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc-----------cccCHHHH-
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI-----------RSLGLEDL- 72 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i-----------~~~~~~~~- 72 (163)
.+++++|+. ...+++++| + +++||+++|+| ||||||||| ++++.|+..| +.+ .+......
T Consensus 95 ~~ls~~yg~--~~~~l~~vs-~-i~~Ge~~~LiG-~NGsGKSTL-lkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~ 168 (607)
T 3bk7_A 95 EDCVHRYGV--NAFVLYRLP-I-VKDGMVVGIVG-PNGTGKTTA-VKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYF 168 (607)
T ss_dssp GSEEEECST--TCCEEECCC-C-CCTTSEEEEEC-CTTSSHHHH-HHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHH
T ss_pred CCeEEEECC--CCeeeCCCC-C-CCCCCEEEEEC-CCCChHHHH-HHHHhCCCCCCCCccccccchhhheeCCEehhhhh
Confidence 478899953 225999999 9 99999999999 999999999 7788888776 222 22222221
Q ss_pred ----HH--hc--cccCCCc--cccc----------CCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 73 ----RS--MA--LAQNQSA--QAFL----------GPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 73 ----~~--~~--~~q~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
.. .+ ++|.... ..+. ......+++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 169 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL----~~~~~~~~~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 169 ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELEL----ENVLDRELHQLSGGELQRVAIAAALL 244 (607)
T ss_dssp HHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTC----TTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCC----CchhCCChhhCCHHHHHHHHHHHHHh
Confidence 11 11 2232110 0000 111234567788888 77889999999999999999999996
Q ss_pred hcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 133 IHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 133 ~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
++|++|||||||++||+.++.++.++|
T Consensus 245 ----~~P~lLlLDEPTs~LD~~~~~~l~~~L 271 (607)
T 3bk7_A 245 ----RKAHFYFFDEPSSYLDIRQRLKVARVI 271 (607)
T ss_dssp ----SCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred ----cCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 789999999999999999999887653
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-28 Score=215.72 Aligned_cols=140 Identities=21% Similarity=0.199 Sum_probs=100.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCC-----CeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPG-----KRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQS 82 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~G-----e~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~ 82 (163)
...|.|+. ..++++++||+ +.+| |+++|+| ||||||||| ++++.|+..|..=.... .....+++|...
T Consensus 351 ~~~~~y~~--~~~~l~~vsl~-v~~G~~~~GEiv~iiG-~NGsGKSTL-lk~l~Gl~~p~~G~~~~--~~~i~~~~q~~~ 423 (608)
T 3j16_B 351 SRAFSYPS--LKKTQGDFVLN-VEEGEFSDSEILVMMG-ENGTGKTTL-IKLLAGALKPDEGQDIP--KLNVSMKPQKIA 423 (608)
T ss_dssp SSCCEECC--EEEECSSCEEE-ECCEECCTTCEEEEES-CTTSSHHHH-HHHHHTSSCCSBCCCCC--SCCEEEECSSCC
T ss_pred ceeEEecC--cccccCceEEE-EecCccccceEEEEEC-CCCCcHHHH-HHHHhcCCCCCCCcCcc--CCcEEEeccccc
Confidence 46788874 24689999999 9999 7899999 999999999 67788888773211110 000111333321
Q ss_pred ccc--------cc--CCCC----CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeeccc
Q psy17517 83 AQA--------FL--GPEN----PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEID 148 (163)
Q Consensus 83 ~~~--------~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPt 148 (163)
... +. .... ..+++++.+++ .+..++++.+|||||||||+|||||+ ++|++|||||||
T Consensus 424 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l----~~~~~~~~~~LSGGqkQRv~iAraL~----~~p~lLlLDEPT 495 (608)
T 3j16_B 424 PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI----DDIIDQEVQHLSGGELQRVAIVLALG----IPADIYLIDEPS 495 (608)
T ss_dssp CCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS----TTTSSSBSSSCCHHHHHHHHHHHHTT----SCCSEEEECCTT
T ss_pred ccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC----hhhhcCChhhCCHHHHHHHHHHHHHH----hCCCEEEEECCC
Confidence 100 00 0000 11235666777 78889999999999999999999995 789999999999
Q ss_pred CCCCHHHHHHHHhh
Q psy17517 149 AALDNTNIGKVASY 162 (163)
Q Consensus 149 s~LD~~~~~~i~~~ 162 (163)
++||+.++..+.++
T Consensus 496 ~gLD~~~~~~i~~l 509 (608)
T 3j16_B 496 AYLDSEQRIICSKV 509 (608)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999988765
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-27 Score=208.51 Aligned_cols=142 Identities=18% Similarity=0.199 Sum_probs=99.7
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccc-------------cCHHH
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRS-------------LGLED 71 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~-------------~~~~~ 71 (163)
.+++++|..+ ...+.+++ + +.+||+++|+| ||||||||| ++++.|+..| +.+.. .....
T Consensus 81 ~~~~~~Y~~~--~~~l~~l~-~-~~~Gei~~LvG-pNGaGKSTL-LkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 81 AHVTHRYSAN--SFKLHRLP-T-PRPGQVLGLVG-TNGIGKSTA-LKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TTEEEECSTT--SCEEECCC-C-CCTTSEEEEEC-CTTSSHHHH-HHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECCC--ceeecCCC-C-CCCCCEEEEEC-CCCChHHHH-HHHHhcCCCCCCceEecccchhhhhheecChhhhh
Confidence 3789999653 45677776 6 99999999999 999999999 7788888877 33321 11111
Q ss_pred HHHh-----c--cccCC--Cccc--ccC------------CC---CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHH
Q psy17517 72 LRSM-----A--LAQNQ--SAQA--FLG------------PE---NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVA 125 (163)
Q Consensus 72 ~~~~-----~--~~q~~--~~~~--~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrv 125 (163)
+... + ++..+ ++.. +.. .. ...+++++.+++ ....++++.+|||||||||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgGe~Qrv 230 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL----ENVLKRDIEKLSGGELQRF 230 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTC----TGGGGSCTTTCCHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCC----cchhCCChHHCCHHHHHHH
Confidence 1100 0 01101 0000 000 00 112346677777 7788999999999999999
Q ss_pred HHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 126 ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 126 aiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|||||+ ++|+++|||||||+||+.++..+.++
T Consensus 231 ~iAraL~----~~p~llllDEPts~LD~~~~~~l~~~ 263 (608)
T 3j16_B 231 AIGMSCV----QEADVYMFDEPSSYLDVKQRLNAAQI 263 (608)
T ss_dssp HHHHHHH----SCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHH----hCCCEEEEECcccCCCHHHHHHHHHH
Confidence 9999996 78999999999999999999887765
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=3.1e-28 Score=210.75 Aligned_cols=126 Identities=20% Similarity=0.125 Sum_probs=91.5
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCCcc---------ccc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQSAQ---------AFL 87 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~~~---------~~~ 87 (163)
.+..+||+ |.+||+++|+| ||||||||| ++++.++.+| +.+.-. ...+ ++|..... .+.
T Consensus 283 ~l~~~~~~-i~~Gei~~i~G-~nGsGKSTL-l~~l~Gl~~p~~G~i~~~-----~~~i~~~~q~~~~~~~~tv~~~l~~~ 354 (538)
T 3ozx_A 283 QLVVDNGE-AKEGEIIGILG-PNGIGKTTF-ARILVGEITADEGSVTPE-----KQILSYKPQRIFPNYDGTVQQYLENA 354 (538)
T ss_dssp EEEECCEE-EETTCEEEEEC-CTTSSHHHH-HHHHTTSSCCSBCCEESS-----CCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred EEEeccce-ECCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCcEEEEC-----CeeeEeechhcccccCCCHHHHHHHh
Confidence 46666788 99999999999 999999999 7788888877 233210 0112 22221100 000
Q ss_pred CCC---CC---chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 88 GPE---NP---EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 88 ~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
... .. .+++++.+++ .+..++++.+|||||||||+|||||+ ++|++|||||||++||+.++.++.+
T Consensus 355 ~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSGGq~QRv~iAraL~----~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 355 SKDALSTSSWFFEEVTKRLNL----HRLLESNVNDLSGGELQKLYIAATLA----KEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp CSSTTCTTSHHHHHTTTTTTG----GGCTTSBGGGCCHHHHHHHHHHHHHH----SCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHcCC----HHHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHH
Confidence 000 11 1335566666 67889999999999999999999996 7899999999999999999998876
Q ss_pred h
Q psy17517 162 Y 162 (163)
Q Consensus 162 ~ 162 (163)
+
T Consensus 427 ~ 427 (538)
T 3ozx_A 427 A 427 (538)
T ss_dssp H
T ss_pred H
Confidence 5
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=6.3e-28 Score=211.31 Aligned_cols=134 Identities=18% Similarity=0.054 Sum_probs=98.2
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCCc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQSA 83 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~~ 83 (163)
+.++.|.+ ..++++||+ +.+||+++|+| ||||||||| ++++.|+..| +.+.- +.++ ++|++..
T Consensus 362 ~l~~~~~~----~~l~~~~~~-v~~Gei~~i~G-~NGsGKSTL-lk~l~Gl~~p~~G~I~~------~~~i~~v~Q~~~~ 428 (607)
T 3bk7_A 362 RLVKDYGS----FKLEVEPGE-IRKGEVIGIVG-PNGIGKTTF-VKMLAGVEEPTEGKVEW------DLTVAYKPQYIKA 428 (607)
T ss_dssp CEEEECSS----CEEEECCEE-EETTCEEEEEC-CTTSSHHHH-HHHHHTSSCCSBSCCCC------CCCEEEECSSCCC
T ss_pred ceEEEecc----eEEEecccc-cCCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCceEEEE------eeEEEEEecCccC
Confidence 34555632 368888888 99999999999 999999999 6778888776 33331 1233 5555421
Q ss_pred ccc--------cC------CCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccC
Q psy17517 84 QAF--------LG------PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA 149 (163)
Q Consensus 84 ~~~--------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts 149 (163)
... .. ......++++.+++ .+..++++.+|||||||||+|||||+ ++|++|||||||+
T Consensus 429 ~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSGGe~QRv~iAraL~----~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 429 EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI----IDLYDRNVEDLSGGELQRVAIAATLL----RDADIYLLDEPSA 500 (607)
T ss_dssp CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC----TTTTTSBGGGCCHHHHHHHHHHHHHT----SCCSEEEEECTTT
T ss_pred CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC----chHhcCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCcc
Confidence 100 00 00011234555666 67889999999999999999999995 8899999999999
Q ss_pred CCCHHHHHHHHhh
Q psy17517 150 ALDNTNIGKVASY 162 (163)
Q Consensus 150 ~LD~~~~~~i~~~ 162 (163)
+||+.++..+.++
T Consensus 501 ~LD~~~~~~l~~~ 513 (607)
T 3bk7_A 501 YLDVEQRLAVSRA 513 (607)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999988775
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=5.6e-28 Score=213.41 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=45.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCCC--EEEeecccCCCCHHHHHHHHhhC
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPAP--FFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~--lllLDEPts~LD~~~~~~i~~~l 163 (163)
.++++.+|||||||||+|||||+ ++|+ +|||||||++||+.++..+.++|
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~----~~p~~~lLlLDEPtsgLD~~~~~~l~~~l 247 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIG----SRLTGVLYVLDEPSIGLHQRDNDRLIATL 247 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHH----TCCCSCEEEEECTTTTCCGGGHHHHHHHH
T ss_pred hcCCcccCCHHHHHHHHHHHHHh----hCCCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 68899999999999999999996 6777 99999999999999999988753
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=4.2e-28 Score=209.89 Aligned_cols=125 Identities=20% Similarity=0.112 Sum_probs=92.0
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccccCHHHHHHhc--cccCCCccccc--------C
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRSLGLEDLRSMA--LAQNQSAQAFL--------G 88 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~~~~~~~~~~~--~~q~~~~~~~~--------~ 88 (163)
.++++||+ |.+||+++|+| ||||||||| ++++.|+.+| +.+.- ..++ ++|++...... .
T Consensus 301 ~l~~~~~~-i~~Ge~~~i~G-~NGsGKSTL-lk~l~Gl~~p~~G~i~~------~~~i~~v~Q~~~~~~~~tv~~~~~~~ 371 (538)
T 1yqt_A 301 RLEVEPGE-IKKGEVIGIVG-PNGIGKTTF-VKMLAGVEEPTEGKIEW------DLTVAYKPQYIKADYEGTVYELLSKI 371 (538)
T ss_dssp EEEECCEE-EETTCEEEEEC-CTTSSHHHH-HHHHHTSSCCSBCCCCC------CCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred EEEeCccc-cCCCCEEEEEC-CCCCCHHHH-HHHHhCCCCCCCeEEEE------CceEEEEecCCcCCCCCcHHHHHHhh
Confidence 57788888 89999999999 999999999 6778888776 33431 1223 55554221000 0
Q ss_pred --C--CC--CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 89 --P--EN--PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 89 --~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
. .. ...++++.+++ .+..++++.+|||||||||+|||+|+ ++|++|||||||++||+.++..+.++
T Consensus 372 ~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSGGe~qrv~lAraL~----~~p~lLlLDEPt~~LD~~~~~~i~~~ 443 (538)
T 1yqt_A 372 DASKLNSNFYKTELLKPLGI----IDLYDREVNELSGGELQRVAIAATLL----RDADIYLLDEPSAYLDVEQRLAVSRA 443 (538)
T ss_dssp HHHHHTCHHHHHHTTTTTTC----GGGTTSBGGGCCHHHHHHHHHHHHHT----SCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHcCC----hhhhcCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 00 01123444444 56778899999999999999999995 78999999999999999999998875
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=9.6e-27 Score=201.39 Aligned_cols=141 Identities=13% Similarity=0.026 Sum_probs=98.1
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccc-------------cccCHHHH
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATI-------------RSLGLEDL 72 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i-------------~~~~~~~~ 72 (163)
...++|..+ .++-..+.+.++||+++|+| ||||||||| ++++.++..| +.+ ...+...+
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiG-pNGaGKSTL-lkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~ 77 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLG-KNGVGKTTV-LKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNY 77 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEEC-CTTSSHHHH-HHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEEC-CCCCcHHHH-HHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHH
Confidence 467889654 34555566578999999999 999999999 7788888876 233 11111111
Q ss_pred HHh-----c--c--ccCCCc--cccc----------CCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy17517 73 RSM-----A--L--AQNQSA--QAFL----------GPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 131 (163)
Q Consensus 73 ~~~-----~--~--~q~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL 131 (163)
... . . .+.... ..+. ......+++++.+++ ....++++.+|||||||||+|||||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l----~~~~~~~~~~LSgGe~Qrv~iA~aL 153 (538)
T 3ozx_A 78 FKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM----TNLWNKDANILSGGGLQRLLVAASL 153 (538)
T ss_dssp HHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTC----GGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCC----chhhcCChhhCCHHHHHHHHHHHHH
Confidence 100 0 0 111100 0000 111233457777777 6788999999999999999999999
Q ss_pred HhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 132 AIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 132 ~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+ ++|++||||||||+||+.++..+.++
T Consensus 154 ~----~~p~illlDEPts~LD~~~~~~l~~~ 180 (538)
T 3ozx_A 154 L----READVYIFDQPSSYLDVRERMNMAKA 180 (538)
T ss_dssp H----SCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred H----cCCCEEEEECCcccCCHHHHHHHHHH
Confidence 6 78999999999999999999888765
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=4.6e-27 Score=213.90 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=95.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCc-ccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSA-QAF 86 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~-~~~ 86 (163)
+.++.|+ ++.+|+|+||+ |.+||+++|+| |||||||||++.+.+|... +.+... ..+++++.++. ..+
T Consensus 440 ~ls~~yg---~~~iL~~vsl~-I~~Ge~v~LiG-pNGsGKSTLLk~LagG~i~-----g~~~~~-~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 440 EFSLAYG---AKILLNKTQLR-LKRARRYGICG-PNGCGKSTLMRAIANGQVD-----GFPTQE-ECRTVYVEHDIDGTH 508 (986)
T ss_dssp EEEEEET---TEEEEEEEEEE-EETTCEEEEEC-STTSSHHHHHHHHHHTCST-----TCCCTT-TSCEEETTCCCCCCC
T ss_pred eEEEEEC---CEEeEecceEE-EcCCCEEEEEC-CCCCCHHHHHHHHhCCCcC-----CCcccc-ceeEEEEcccccccc
Confidence 5677885 35799999999 99999999999 9999999995444434221 111000 01133332211 111
Q ss_pred ----------cCC---CCCchhHHHhchhcccCC-CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCC
Q psy17517 87 ----------LGP---ENPEEPYLQGVNYNCVAP-GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152 (163)
Q Consensus 87 ----------~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD 152 (163)
... ..+..++++.+++ . ...++++.+||||||||++|||||+ .+|++|||||||++||
T Consensus 509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL----~~~~~~~~~~~LSGGqkQRvaLArAL~----~~P~lLLLDEPTs~LD 580 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGF----TDEMIAMPISALSGGWKMKLALARAVL----RNADILLLDEPTNHLD 580 (986)
T ss_dssp TTSBHHHHHHTTCSSCHHHHHHHHHHTTC----CHHHHHSBGGGCCHHHHHHHHHHHHHH----TTCSEEEEESTTTTCC
T ss_pred cCCcHHHHHHHhhcCHHHHHHHHHHHcCC----ChhhhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEECCccCCC
Confidence 000 0011235556665 3 4568889999999999999999996 7899999999999999
Q ss_pred HHHHHHHHhhC
Q psy17517 153 NTNIGKVASYI 163 (163)
Q Consensus 153 ~~~~~~i~~~l 163 (163)
+.++..+.++|
T Consensus 581 ~~~~~~l~~~L 591 (986)
T 2iw3_A 581 TVNVAWLVNYL 591 (986)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=1.7e-26 Score=210.22 Aligned_cols=49 Identities=29% Similarity=0.348 Sum_probs=45.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.++++.+||||||||++|||+|+ ++|++|||||||++||+.+...+.+.
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~----~~P~LLLLDEPT~gLD~~s~~~L~~~ 943 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTW----QRPHLIVLDEPTNYLDRDSLGALSKA 943 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHT----TCCSEEEEECGGGTCCHHHHHHHHHH
T ss_pred cCCCccccCHHHHHHHHHHHHHH----hCCCEEEEECCccCCCHHHHHHHHHH
Confidence 47789999999999999999995 78999999999999999999988764
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=2.6e-26 Score=202.72 Aligned_cols=54 Identities=30% Similarity=0.391 Sum_probs=46.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..++++.+|||||||||+|||||+.+ .++|++|||||||++||+.++.+++++|
T Consensus 536 ~~~~~~~~LSgG~~qrv~iAraL~~~-p~~p~llllDEPt~~LD~~~~~~i~~~l 589 (670)
T 3ux8_A 536 KLGQPATTLSGGEAQRVKLAAELHRR-SNGRTLYILDEPTTGLHVDDIARLLDVL 589 (670)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHHSC-CCSCEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hccCCchhCCHHHHHHHHHHHHHhhC-CCCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999743 2335799999999999999999988753
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=3.3e-25 Score=165.11 Aligned_cols=115 Identities=9% Similarity=-0.021 Sum_probs=73.5
Q ss_pred CeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCc--hhH--HHh
Q psy17517 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPE--EPY--LQG 99 (163)
Q Consensus 24 ~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~--~~~--~~~ 99 (163)
||||+ +++||+++++| |||||||||++.+..+.. + ...+.+ +.+++|++....+....... ... ...
T Consensus 1 ~vsl~-i~~gei~~l~G-~nGsGKSTl~~~~~~~~~----~--~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (171)
T 4gp7_A 1 SMKLT-IPELSLVVLIG-SSGSGKSTFAKKHFKPTE----V--ISSDFC-RGLMSDDENDQTVTGAAFDVLHYIVSKRLQ 71 (171)
T ss_dssp CEEEE-EESSEEEEEEC-CTTSCHHHHHHHHSCGGG----E--EEHHHH-HHHHCSSTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred Ccccc-CCCCEEEEEEC-CCCCCHHHHHHHHccCCe----E--EccHHH-HHHhcCcccchhhHHHHHHHHHHHHHHHHh
Confidence 68999 99999999999 999999999544222111 1 222222 34566666444432100000 000 111
Q ss_pred chhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 100 VNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
.+. ....+ .....|+|||||++|||+++ .+|++++|||||++||+.++
T Consensus 72 ~g~----~~~~~-~~~~~s~g~~qrv~iAral~----~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 72 LGK----LTVVD-ATNVQESARKPLIEMAKDYH----CFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp TTC----CEEEE-SCCCSHHHHHHHHHHHHHTT----CEEEEEEECCCHHHHHHHHH
T ss_pred CCC----eEEEE-CCCCCHHHHHHHHHHHHHcC----CcEEEEEEeCCHHHHHHHHh
Confidence 121 11112 33456999999999999995 78999999999999999944
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=3.9e-23 Score=187.49 Aligned_cols=54 Identities=30% Similarity=0.353 Sum_probs=45.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..++++.+|||||||||+|||+|+.+ ..+|+++||||||++||+..+.++++.|
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~-p~~p~LLILDEPTsGLD~~~~~~L~~lL 851 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKR-DTGRTLYILDEPTVGLHFEDVRKLVEVL 851 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSC-CCSSEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhC-CCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999632 1235899999999999999999988753
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=8.3e-23 Score=185.27 Aligned_cols=54 Identities=30% Similarity=0.391 Sum_probs=46.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..++++.+|||||||||+|||+|+.+ ..+|+++||||||++||+..+.+++++|
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~-p~~p~lLILDEPTsGLD~~~~~~l~~lL 891 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRR-SNGRTLYILDEPTTGLHVDDIARLLDVL 891 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSC-CCSCEEEEEECTTTTCCHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 67889999999999999999999621 0135999999999999999999988753
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.86 E-value=1.2e-22 Score=169.16 Aligned_cols=43 Identities=35% Similarity=0.403 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHhcccCCC--CEEEeecccCCCCHHHHHHHHhhC
Q psy17517 117 LSGGEKTVAALALLFAIHSYHPA--PFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 117 LSgGqkQrvaiAraL~~~~~~~p--~lllLDEPts~LD~~~~~~i~~~l 163 (163)
||||||||++||++|+ .+| ++|||||||++||+..+..+.+.|
T Consensus 296 lSgGe~qrl~lA~~l~----~~~~~~~LlLDEpt~~LD~~~~~~l~~~L 340 (415)
T 4aby_A 296 ASGGELSRVMLAVSTV----LGADTPSVVFDEVDAGIGGAAAIAVAEQL 340 (415)
T ss_dssp SCHHHHHHHHHHHHHH----HCCSSSEEEESSTTTTCCHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHHH----hCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 6999999999999996 568 999999999999999999987753
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.86 E-value=1.4e-22 Score=184.16 Aligned_cols=54 Identities=30% Similarity=0.350 Sum_probs=45.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhhC
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~l 163 (163)
..++++.+|||||||||+|||+|+.+ ..+|+++||||||++||+..+.++.++|
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~~-p~~p~lLILDEPTsGLD~~~~~~l~~lL 909 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQKR-STGRTVYILDEPTTGLHFDDIRKLLNVI 909 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSSC-CCSSEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred cccCccccCCHHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 56888999999999999999999521 0135999999999999999999988753
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=1.5e-22 Score=182.40 Aligned_cols=53 Identities=28% Similarity=0.346 Sum_probs=45.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..++++.+|||||||||+|||+|+.+ .++|+++||||||++||+..+.++.++
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~-p~~p~lLILDEPTsGLD~~~~~~l~~l 775 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRS-GRGGTVYVLDEPTTGLHPADVERLQRQ 775 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSC-CSSCEEEEEECTTTTCCHHHHHHHHHH
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 45788999999999999999999621 003799999999999999999998775
No 66
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2e-23 Score=177.60 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=82.0
Q ss_pred cCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-c-ccccCHHHHHHhc--cccCCCc-----------cc
Q psy17517 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-T-IRSLGLEDLRSMA--LAQNQSA-----------QA 85 (163)
Q Consensus 23 ~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-~-i~~~~~~~~~~~~--~~q~~~~-----------~~ 85 (163)
.++||+ +++|++++|+| ||||||||| ++++.++..+ . . +. ++. +.++.+ ++|.... .+
T Consensus 129 ~~vsl~-i~~Ge~v~IvG-pnGsGKSTL-lr~L~Gl~~p~~G~~pI~-vdg-~~~~~i~~vpq~~~l~~~~~~~tv~eni 203 (460)
T 2npi_A 129 EKIRMS-NFEGPRVVIVG-GSQTGKTSL-SRTLCSYALKFNAYQPLY-INL-DPQQPIFTVPGCISATPISDILDAQLPT 203 (460)
T ss_dssp HHHHHH-SSSCCCEEEEE-STTSSHHHH-HHHHHHTTHHHHCCCCEE-EEC-CTTSCSSSCSSCCEEEECCSCCCTTCTT
T ss_pred hcCceE-eCCCCEEEEEC-CCCCCHHHH-HHHHhCcccccCCceeEE-EcC-CccCCeeeeccchhhcccccccchhhhh
Confidence 379999 99999999999 999999999 6677777654 3 3 21 110 123444 4444310 01
Q ss_pred ccCC-------CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHH--HHhcccCCCCE----EEeec-ccCCC
Q psy17517 86 FLGP-------ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL--FAIHSYHPAPF----FVLDE-IDAAL 151 (163)
Q Consensus 86 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAra--L~~~~~~~p~l----llLDE-Pts~L 151 (163)
|... .....++++.+++ .+..+ +.+||||||||+++||+ |+ .+|++ +|||| ||++|
T Consensus 204 ~~~~~~~~~~~~~~~~~ll~~~gl----~~~~~--~~~LSgGq~qrlalAra~rL~----~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 204 WGQSLTSGATLLHNKQPMVKNFGL----ERINE--NKDLYLECISQLGQVVGQRLH----LDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp CSCBCBSSCCSSCCBCCEECCCCS----SSGGG--CHHHHHHHHHHHHHHHHHHHH----HCHHHHHSCEEEECCCGGGS
T ss_pred cccccccCcchHHHHHHHHHHhCC----Ccccc--hhhhhHHHHHHHHHHHHHHhc----cCcccCcceEEEeCCccccc
Confidence 1000 0111223444444 34333 78999999999999999 96 67999 99999 99999
Q ss_pred CHHHHHHHHh
Q psy17517 152 DNTNIGKVAS 161 (163)
Q Consensus 152 D~~~~~~i~~ 161 (163)
|+. ...+.+
T Consensus 274 D~~-~~~l~~ 282 (460)
T 2npi_A 274 DEN-LAELHH 282 (460)
T ss_dssp CSS-CHHHHH
T ss_pred Chh-HHHHHH
Confidence 998 544443
No 67
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.84 E-value=2.4e-23 Score=175.00 Aligned_cols=132 Identities=13% Similarity=0.104 Sum_probs=91.5
Q ss_pred CcccCeeeEeeCCCC--------------------eEEeecCCCCChHHHHHHHHHhccccc--ccc--cccCHHHHHHh
Q psy17517 20 PYLQGVNYNCVAPGK--------------------RFQPMTNLSGGEKTVAALALLFAIHRI--ATI--RSLGLEDLRSM 75 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge--------------------~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i--~~~~~~~~~~~ 75 (163)
.++++||++ +++|+ +++++| ||||||||| ++++.++..+ +.+ .+.+.. +..
T Consensus 37 ~~l~~is~~-i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG-~nGaGKSTL-ln~L~Gl~~p~~GsI~~~g~~~t--~~~ 111 (413)
T 1tq4_A 37 EILNLIELR-MRAGNIQLTNSAISDALKEIDSSVLNVAVTG-ETGSGKSSF-INTLRGIGNEEEGAAKTGVVEVT--MER 111 (413)
T ss_dssp HHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHCCEEEEEEE-CTTSSHHHH-HHHHHTCCTTSTTSCCCCC------CCC
T ss_pred HHhhhccce-ecCCCCcccchhhhhhhhhcccCCeEEEEEC-CCCCcHHHH-HHHHhCCCCccCceEEECCeecc--eeE
Confidence 589999999 99999 999999 999999999 6778888776 222 222111 223
Q ss_pred ccccCCCc-c-cc------cCCCCCchhHHHhchhcccCCCccCCCCCCCCHH--HHHHHHHHHHHHhcc------cCCC
Q psy17517 76 ALAQNQSA-Q-AF------LGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGG--EKTVAALALLFAIHS------YHPA 139 (163)
Q Consensus 76 ~~~q~~~~-~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG--qkQrvaiAraL~~~~------~~~p 139 (163)
+++|.+.. + .+ .......+++++.+++ .+. +..+. ||+| |+||++||++|+... +++|
T Consensus 112 ~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L----~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 112 HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF----YEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG----GGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred EeccccccCCeeehHhhcccchHHHHHHHHHHcCC----Ccc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 46665421 1 11 1112234567777776 332 22333 9999 999999999997300 0179
Q ss_pred CEEEeecccCCCCHHHHHHHHhh
Q psy17517 140 PFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 140 ~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++++||||++||+..+.++.+.
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHH
T ss_pred cccccCcccccCCHHHHHHHHHH
Confidence 99999999999999999887764
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=6.7e-21 Score=154.81 Aligned_cols=54 Identities=46% Similarity=0.787 Sum_probs=46.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 109 KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..+.++..||+|||||++|||+|+...+.+|+++||||||++||+..+..+.+.
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~ 265 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRL 265 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 355678899999999999999997432367999999999999999999988765
No 69
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.84 E-value=5.5e-22 Score=149.22 Aligned_cols=111 Identities=8% Similarity=-0.057 Sum_probs=70.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhccccc--c--cccccCHHHHHHhc--cccCCCcccccCCCCCchhHHHhchhcccCCC
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAIHRI--A--TIRSLGLEDLRSMA--LAQNQSAQAFLGPENPEEPYLQGVNYNCVAPG 108 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l~~~--~--~i~~~~~~~~~~~~--~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (163)
.++|+| ||||||||| ++++.++... . ..........++++ ++|.+. . .+.++..++. ....
T Consensus 2 ~i~l~G-~nGsGKTTL-l~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~-----~----~~~~~~~~~~--~~~~ 68 (178)
T 1ye8_A 2 KIIITG-EPGVGKTTL-VKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE-----G----KKKIFSSKFF--TSKK 68 (178)
T ss_dssp EEEEEC-CTTSSHHHH-HHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT-----C----CEEEEEETTC--CCSS
T ss_pred EEEEEC-CCCCCHHHH-HHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc-----H----HHHHHHhhcC--Cccc
Confidence 588999 999999999 5555555532 0 11111111234444 333331 0 0111111111 0013
Q ss_pred ccCCCCCCCCHHHHHHHHHHHH-----HHhcccCCCCEEEeec--ccCCCCHHHHHHHHhh
Q psy17517 109 KRFQPMTNLSGGEKTVAALALL-----FAIHSYHPAPFFVLDE--IDAALDNTNIGKVASY 162 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiAra-----L~~~~~~~p~lllLDE--Pts~LD~~~~~~i~~~ 162 (163)
..++++.+||||||||++|||+ ++ .+|++++||| ||++||+..+..+.+.
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~----~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKK----DRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHH----CTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccc----cCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 5677888999999999999996 75 7899999999 9999999999888764
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.84 E-value=3.4e-21 Score=159.44 Aligned_cols=52 Identities=31% Similarity=0.434 Sum_probs=44.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcc--cCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 111 FQPMTNLSGGEKTVAALALLFAIHS--YHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 111 ~~~~~~LSgGqkQrvaiAraL~~~~--~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
++++.+||||||||++|||||++.+ .++|+++||||||++||+.++..+.++
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~ 327 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASV 327 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 4678899999999999999997311 158999999999999999999988765
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.81 E-value=1.5e-22 Score=155.85 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=67.5
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--ccccc----cCHHHHHHhc--cccCCCccc-ccCC
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--ATIRS----LGLEDLRSMA--LAQNQSAQA-FLGP 89 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~~----~~~~~~~~~~--~~q~~~~~~-~~~~ 89 (163)
+++|+| +++||+++|+| ||||||||| ++++.++ .| +.+.. .+..++++++ ++|++..++ .+.
T Consensus 13 ~~~l~~-----i~~Ge~~~liG-~nGsGKSTL-l~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~- 83 (208)
T 3b85_A 13 KHYVDA-----IDTNTIVFGLG-PAGSGKTYL-AMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYL- 83 (208)
T ss_dssp HHHHHH-----HHHCSEEEEEC-CTTSSTTHH-HHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTT-
T ss_pred HHHHHh-----ccCCCEEEEEC-CCCCCHHHH-HHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHH-
Confidence 457777 47899999999 999999999 6777887 66 33321 1111233444 555542222 110
Q ss_pred CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 90 ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
......+.-. .......+.... ..|||||++|||||+ .+|+++||||||++ ++..+.+
T Consensus 84 ----~~~~~~~~~~-~~~~~~~~~l~~-glGq~qrv~lAraL~----~~p~lllLDEPts~----~~~~l~~ 141 (208)
T 3b85_A 84 ----RPLHDALRDM-VEPEVIPKLMEA-GIVEVAPLAYMRGRT----LNDAFVILDEAQNT----TPAQMKM 141 (208)
T ss_dssp ----HHHHHHHTTT-SCTTHHHHHHHT-TSEEEEEGGGGTTCC----BCSEEEEECSGGGC----CHHHHHH
T ss_pred ----HHHHHHHHHh-ccHHHHHHHHHh-CCchHHHHHHHHHHh----cCCCEEEEeCCccc----cHHHHHH
Confidence 0000000000 000000000000 129999999999995 78999999999999 5555544
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.79 E-value=5.6e-22 Score=160.81 Aligned_cols=118 Identities=10% Similarity=0.016 Sum_probs=79.8
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCC-----
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQ----- 81 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~----- 81 (163)
.+++|.|+ .++|++|||+ |++|++++|+| ||||||||| ++++.+++ .+.+... +.|.+
T Consensus 105 ~~vs~~y~----~~vL~~vsl~-i~~Ge~vaIvG-psGsGKSTL-l~lL~gl~-~G~I~~~---------v~q~~~lf~~ 167 (305)
T 2v9p_A 105 QNIELITF----INALKLWLKG-IPKKNCLAFIG-PPNTGKSML-CNSLIHFL-GGSVLSF---------ANHKSHFWLA 167 (305)
T ss_dssp TTCCHHHH----HHHHHHHHHT-CTTCSEEEEEC-SSSSSHHHH-HHHHHHHH-TCEEECG---------GGTTSGGGGG
T ss_pred EEEEEEcC----hhhhccceEE-ecCCCEEEEEC-CCCCcHHHH-HHHHhhhc-CceEEEE---------ecCccccccc
Confidence 36778885 4699999999 99999999999 999999999 56666665 3333110 11211
Q ss_pred ---C-cccccCCCCC--chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHH
Q psy17517 82 ---S-AQAFLGPENP--EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTN 155 (163)
Q Consensus 82 ---~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~ 155 (163)
+ +..+. .... ..++++.+ + ....+ +..|||||||| |||| +++|++|| ||+||+.+
T Consensus 168 ti~~~ni~~~-~~~~~~~~~~i~~~-L----~~gld--g~~LSgGqkQR---ARAl----l~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 168 SLADTRAALV-DDATHACWRYFDTY-L----RNALD--GYPVSIDRKHK---AAVQ----IKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp GGTTCSCEEE-EEECHHHHHHHHHT-T----TGGGG--TCCEECCCSSC---CCCE----ECCCCEEE----EESSCSTT
T ss_pred cHHHHhhccC-ccccHHHHHHHHHH-h----HccCC--ccCcCHHHHHH---HHHH----hCCCCEEE----ECCCCHHH
Confidence 1 11111 1101 11223331 2 22222 78999999999 9999 58999999 99999998
Q ss_pred HHHHH
Q psy17517 156 IGKVA 160 (163)
Q Consensus 156 ~~~i~ 160 (163)
+..+.
T Consensus 229 ~~~i~ 233 (305)
T 2v9p_A 229 EDRYL 233 (305)
T ss_dssp CGGGG
T ss_pred HHHHH
Confidence 87765
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.76 E-value=1.5e-18 Score=142.00 Aligned_cols=49 Identities=31% Similarity=0.465 Sum_probs=40.4
Q ss_pred cCCCCCCCCHHHHHHH------HHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 110 RFQPMTNLSGGEKTVA------ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrv------aiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.++++.+||||||||+ ++|++| +.+|+++||||||++||+..+..+.++
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l----~~~p~~lllDEp~~~LD~~~~~~l~~~ 296 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYL----AGEISLLILDEPTPYLDEERRRKLITI 296 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHT----TTTTCEEEEECCCTTCCHHHHHHHHHH
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHh----cCCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 3567899999999955 455555 378999999999999999999888764
No 74
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=4.1e-21 Score=148.22 Aligned_cols=127 Identities=9% Similarity=-0.070 Sum_probs=68.1
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccccccc------ccCH-HHHHHhc--cccCCCc------
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIR------SLGL-EDLRSMA--LAQNQSA------ 83 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~------~~~~-~~~~~~~--~~q~~~~------ 83 (163)
...|+||||+ |++|++++|+| ||||||||| ++++.++.+ +.+. ..+. ...+..+ ++|++..
T Consensus 10 ~~~l~~isl~-i~~G~~~~lvG-psGsGKSTL-l~~L~g~~p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGS-MNNIYPLVICG-PSGVGKGTL-IKKLLNEFP-NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -------------CCCCEEEEC-STTSSHHHH-HHHHHHHST-TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCcee-cCCCCEEEEEC-CCCCCHHHH-HHHHHhhCC-CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 4589999999 99999999999 999999999 555666653 2111 0000 0011122 3443210
Q ss_pred ---ccc----cCC-----CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHH-----HHHHHhcccCCCCEEEeec
Q psy17517 84 ---QAF----LGP-----ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAAL-----ALLFAIHSYHPAPFFVLDE 146 (163)
Q Consensus 84 ---~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvai-----AraL~~~~~~~p~lllLDE 146 (163)
.++ ... ....+++++.... ... ..+|||||+||+++ +|++ +.+|++++|||
T Consensus 86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~-----~il---~~~lsggq~qR~~i~~~~~~~~l----l~~~~~~~Lde 153 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKI-----CLF---EMNINGVKQLKKSTHIKNALYIF----IKPPSTDVLLS 153 (218)
T ss_dssp TTCEEEEEEETTEEEEEEHHHHHHHHHTTCE-----EEE---EECHHHHHHHTTCSSCCSCEEEE----EECSCHHHHHH
T ss_pred ccchhhhhhcccccCCCcHHHHHHHHhCCCc-----EEE---EecHHHHHHHHHHhcCCCcEEEE----EeCcCHHHHHH
Confidence 000 000 0001112222111 011 15789999999999 7888 57899999999
Q ss_pred ccCCCCHHHHHHHHh
Q psy17517 147 IDAALDNTNIGKVAS 161 (163)
Q Consensus 147 Pts~LD~~~~~~i~~ 161 (163)
||+++|..+...+.+
T Consensus 154 ~~~~~d~~~~~~i~~ 168 (218)
T 1z6g_A 154 RLLTRNTENQEQIQK 168 (218)
T ss_dssp HHHHTCCCCHHHHHH
T ss_pred HHHhcCCCCHHHHHH
Confidence 999999987776654
No 75
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.71 E-value=6.9e-18 Score=153.33 Aligned_cols=115 Identities=8% Similarity=0.045 Sum_probs=75.7
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhc-cccCCCcccccCCCCCchhH
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMA-LAQNQSAQAFLGPENPEEPY 96 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~-~~q~~~~~~~~~~~~~~~~~ 96 (163)
+..+++||+|+ +++|++++|+| ||||||||+ +++++++... .++ .+.......+ + ....+
T Consensus 659 ~~~V~ndvsl~-~~~g~i~~ItG-PNGaGKSTl-Lr~i~~i~~~------------aq~g~~vpa~~~~i-~---~~d~i 719 (918)
T 3thx_B 659 DQYVPNNTDLS-EDSERVMIITG-PNMGGKSSY-IKQVALITIM------------AQIGSYVPAEEATI-G---IVDGI 719 (918)
T ss_dssp SSSCCEEEEEC-TTSCCEEEEES-CCCHHHHHH-HHHHHHHHHH------------HHHTCCBSSSEEEE-E---CCSEE
T ss_pred Cceeccccccc-CCCCeEEEEEC-CCCCchHHH-HHHHHHHHHH------------hhcCccccchhhhh-h---HHHHH
Confidence 46799999999 99999999999 999999999 5555543211 111 1111111100 1 01123
Q ss_pred HHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHH
Q psy17517 97 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVA 160 (163)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~ 160 (163)
+..++. .+......+++|+||+|++.|+++. ++|+++|||||++|+|+.....+.
T Consensus 720 ~~~ig~----~d~l~~~~stfs~em~~~~~il~~a-----~~p~LlLLDEP~~GlD~~~~~~i~ 774 (918)
T 3thx_B 720 FTRMGA----ADNIYKGRSTFMEELTDTAEIIRKA-----TSQSLVILDELGRGTSTHDGIAIA 774 (918)
T ss_dssp EEEC--------------CCHHHHHHHHHHHHHHC-----CTTCEEEEESTTTTSCHHHHHHHH
T ss_pred HHhCCh----HHHHHHhHHHhhHHHHHHHHHHHhc-----cCCCEEEEeCCCCCCCHHHHHHHH
Confidence 344454 4555666789999999999999984 789999999999999999877665
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.70 E-value=6.5e-19 Score=142.52 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=77.0
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccC----HHHHH--Hhc--cccCCCcc
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLG----LEDLR--SMA--LAQNQSAQ 84 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~----~~~~~--~~~--~~q~~~~~ 84 (163)
+.++||+ +.+|++++++| ||||||||+ ++.+.++..+ . ++.... ...++ ..+ ++|++..
T Consensus 90 ~~~l~~~-~~~g~vi~lvG-~nGsGKTTl-l~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~- 165 (302)
T 3b9q_A 90 KTELQLG-FRKPAVIMIVG-VNGGGKTTS-LGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK- 165 (302)
T ss_dssp CCSCCCC-SSSCEEEEEEC-CTTSCHHHH-HHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C-
T ss_pred ccccccc-cCCCcEEEEEc-CCCCCHHHH-HHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc-
Confidence 4679999 99999999999 999999999 4556666554 1 111111 12232 234 4554320
Q ss_pred ccc-----------CCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC--EEEeecccCCC
Q psy17517 85 AFL-----------GPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP--FFVLDEIDAAL 151 (163)
Q Consensus 85 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~--lllLDEPts~L 151 (163)
.+. ........+++.+++ .+..++++.+|| |||++|||+++ .+|+ +++|| ||++|
T Consensus 166 ~~~~~~v~e~l~~~~~~~~d~~lldt~gl----~~~~~~~~~eLS---kqr~~iaral~----~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 166 AKAATVLSKAVKRGKEEGYDVVLCDTSGR----LHTNYSLMEELI---ACKKAVGKIVS----GAPNEILLVLD-GNTGL 233 (302)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEECCCCC----SSCCHHHHHHHH---HHHHHHHTTST----TCCSEEEEEEE-GGGGG
T ss_pred cCHHHHHHHHHHHHHHcCCcchHHhcCCC----CcchhHHHHHHH---HHHHHHHHhhc----cCCCeeEEEEe-CCCCc
Confidence 110 000111122333333 344556677899 99999999995 7899 99999 99999
Q ss_pred CHHHHHH
Q psy17517 152 DNTNIGK 158 (163)
Q Consensus 152 D~~~~~~ 158 (163)
|+..+.+
T Consensus 234 D~~~~~~ 240 (302)
T 3b9q_A 234 NMLPQAR 240 (302)
T ss_dssp GGHHHHH
T ss_pred CHHHHHH
Confidence 9987653
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.67 E-value=3.1e-18 Score=141.60 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=77.1
Q ss_pred cCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc--c-------cccccC----HHHH--HHhc--cccCCCccc
Q psy17517 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI--A-------TIRSLG----LEDL--RSMA--LAQNQSAQA 85 (163)
Q Consensus 23 ~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~--~-------~i~~~~----~~~~--~~~~--~~q~~~~~~ 85 (163)
.++||+ +++|++++++| ||||||||+ ++.+.++..+ . ++.... ...+ +..+ ++|++.. .
T Consensus 148 ~~l~l~-~~~g~vi~lvG-~nGsGKTTl-l~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-~ 223 (359)
T 2og2_A 148 TELQLG-FRKPAVIMIVG-VNGGGKTTS-LGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-A 223 (359)
T ss_dssp CSCCCC-SSSSEEEEEEC-CTTSCHHHH-HHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-C
T ss_pred CCccee-cCCCeEEEEEc-CCCChHHHH-HHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-c
Confidence 578999 99999999999 999999999 4556666554 1 111110 1122 2234 4554420 1
Q ss_pred cc-----------CCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC--EEEeecccCCCC
Q psy17517 86 FL-----------GPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP--FFVLDEIDAALD 152 (163)
Q Consensus 86 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~--lllLDEPts~LD 152 (163)
+. ........+++.+++ .+..++++.+|| +||++|||+++ .+|+ +|+|| ||++||
T Consensus 224 ~p~~tv~e~l~~~~~~~~d~~lldt~Gl----~~~~~~~~~eLS---kqr~~iaral~----~~P~e~lLvLD-pttglD 291 (359)
T 2og2_A 224 KAATVLSKAVKRGKEEGYDVVLCDTSGR----LHTNYSLMEELI---ACKKAVGKIVS----GAPNEILLVLD-GNTGLN 291 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCC----SSCCHHHHHHHH---HHHHHHHHHST----TCCSEEEEEEE-GGGGGG
T ss_pred ChhhhHHHHHHHHHhCCCHHHHHHhcCC----ChhhhhHHHHHH---HHHHHHHHHHh----cCCCceEEEEc-CCCCCC
Confidence 10 000111122333333 344556677899 99999999995 7899 99999 999999
Q ss_pred HHHHHH
Q psy17517 153 NTNIGK 158 (163)
Q Consensus 153 ~~~~~~ 158 (163)
+..+.+
T Consensus 292 ~~~~~~ 297 (359)
T 2og2_A 292 MLPQAR 297 (359)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 987654
No 78
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.65 E-value=2.5e-18 Score=139.61 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=67.5
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhc--cccCCC--------ccccc---C-CCCCc--
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMA--LAQNQS--------AQAFL---G-PENPE-- 93 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~--~~q~~~--------~~~~~---~-~~~~~-- 93 (163)
+.+|++++|+| ||||||||| .+++.++..+.. +. .++ ++|++. +..+. + +....
T Consensus 87 ~~~g~ivgI~G-~sGsGKSTL-~~~L~gll~~~~--G~------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~ 156 (312)
T 3aez_A 87 RPVPFIIGVAG-SVAVGKSTT-ARVLQALLARWD--HH------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRR 156 (312)
T ss_dssp SCCCEEEEEEC-CTTSCHHHH-HHHHHHHHHTST--TC------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHH
T ss_pred CCCCEEEEEEC-CCCchHHHH-HHHHHhhccccC--CC------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHH
Confidence 78999999999 999999999 455666655410 00 111 222210 00000 0 01111
Q ss_pred --hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCH
Q psy17517 94 --EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153 (163)
Q Consensus 94 --~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~ 153 (163)
.+.++.++ .+..+.++..|||||+||+++||++ +.+|+++|+|||++.+|+
T Consensus 157 ~~~~~L~~l~-----~~~~~~~~~~lS~G~~qRv~~a~al----~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 157 ALMRFVTSVK-----SGSDYACAPVYSHLHYDIIPGAEQV----VRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHH-----TTCSCEEEEEEETTTTEEEEEEEEE----ECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHhC-----CCcccCCcccCChhhhhhhhhHHHh----ccCCCEEEECCccccCCc
Confidence 12333333 2344566789999999999999999 488999999999999873
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.64 E-value=3.7e-18 Score=139.54 Aligned_cols=92 Identities=11% Similarity=0.098 Sum_probs=62.9
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHHHhc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQGV 100 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 100 (163)
++++++++ +++|++++++| ||||||||| ++++.++.++.. ..+.+..+.. +... .. -+.+
T Consensus 160 ~l~~l~~~-i~~g~~v~i~G-~~GsGKTTl-l~~l~g~~~~~~----------g~i~i~~~~e-~~~~--~~----~~~i 219 (330)
T 2pt7_A 160 AISAIKDG-IAIGKNVIVCG-GTGSGKTTY-IKSIMEFIPKEE----------RIISIEDTEE-IVFK--HH----KNYT 219 (330)
T ss_dssp HHHHHHHH-HHHTCCEEEEE-STTSCHHHH-HHHGGGGSCTTS----------CEEEEESSCC-CCCS--SC----SSEE
T ss_pred HHhhhhhh-ccCCCEEEEEC-CCCCCHHHH-HHHHhCCCcCCC----------cEEEECCeec-cccc--cc----hhEE
Confidence 78999999 99999999999 999999999 677788776521 0011111100 0000 00 0111
Q ss_pred hhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccC
Q psy17517 101 NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA 149 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts 149 (163)
++. . . |||+||++|||||. ++|+++++||||+
T Consensus 220 ~~~---~--------g--gg~~~r~~la~aL~----~~p~ilildE~~~ 251 (330)
T 2pt7_A 220 QLF---F--------G--GNITSADCLKSCLR----MRPDRIILGELRS 251 (330)
T ss_dssp EEE---C--------B--TTBCHHHHHHHHTT----SCCSEEEECCCCS
T ss_pred EEE---e--------C--CChhHHHHHHHHhh----hCCCEEEEcCCCh
Confidence 110 0 0 89999999999994 7899999999998
No 80
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.63 E-value=2.5e-16 Score=118.00 Aligned_cols=66 Identities=42% Similarity=0.795 Sum_probs=55.3
Q ss_pred HHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 97 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
...+.+...+.+...+.+..||||||||++|||+|+.+++++|+++||||||++||+.++..+.++
T Consensus 45 ~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~ 110 (173)
T 3kta_B 45 SGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADL 110 (173)
T ss_dssp GSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred ccCceEEecCCCccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHH
Confidence 334444444566777889999999999999999999776678899999999999999999998775
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=9.7e-18 Score=130.96 Aligned_cols=119 Identities=7% Similarity=0.043 Sum_probs=62.9
Q ss_pred CCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhc--cccCCCccccc------
Q psy17517 16 NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMA--LAQNQSAQAFL------ 87 (163)
Q Consensus 16 ~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~--~~q~~~~~~~~------ 87 (163)
+++.++|+||||+ +++|++++|+| ||||||||++ +++.++.....+. ..++.+ +++.. ++.
T Consensus 9 ~~~~~~l~~isl~-i~~g~iigI~G-~~GsGKSTl~-k~L~~~lG~~~~~-----~~~~~i~~v~~d~---~~~~l~~~~ 77 (245)
T 2jeo_A 9 SGVDLGTENLYFQ-SMRPFLIGVSG-GTASGKSTVC-EKIMELLGQNEVE-----QRQRKVVILSQDR---FYKVLTAEQ 77 (245)
T ss_dssp ---------------CCSEEEEEEC-STTSSHHHHH-HHHHHHHTGGGSC-----GGGCSEEEEEGGG---GBCCCCHHH
T ss_pred CCCceeecceecc-CCCCEEEEEEC-CCCCCHHHHH-HHHHHHhchhccc-----ccCCceEEEeCCc---CccccCHhH
Confidence 4467899999999 99999999999 9999999995 4444432111111 112222 22221 110
Q ss_pred ------C------CCC-CchhHHHhch-hcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCH
Q psy17517 88 ------G------PEN-PEEPYLQGVN-YNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153 (163)
Q Consensus 88 ------~------~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~ 153 (163)
. +.. ..+.+.+.+. + ......++..||+||+||+++ +++ +.+|+++|+|||+...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l----~~~~~~~~~~ls~g~~~r~~~-~~~----~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKNI----VEGKTVEVPTYDFVTHSRLPE-TTV----VYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHHH----HTTCCEEECCEETTTTEECSS-CEE----ECCCSEEEEECTTTTTSH
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHHH----HCCCCeecccccccccCccCc-eEE----ecCCCEEEEeCccccccH
Confidence 0 000 0111233333 2 344566788999999999987 455 478999999999988775
Q ss_pred H
Q psy17517 154 T 154 (163)
Q Consensus 154 ~ 154 (163)
.
T Consensus 149 ~ 149 (245)
T 2jeo_A 149 E 149 (245)
T ss_dssp H
T ss_pred H
Confidence 4
No 82
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.61 E-value=2.8e-16 Score=144.31 Aligned_cols=116 Identities=7% Similarity=0.006 Sum_probs=72.4
Q ss_pred ceeeCCCCCCCCcccCeeeEeeCC-------CCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhc---cc
Q psy17517 9 QAFLGPENPEEPYLQGVNYNCVAP-------GKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMA---LA 78 (163)
Q Consensus 9 ~~f~y~~~~~~~~l~~vsl~~i~~-------Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~---~~ 78 (163)
+.+.|++ +..+++||+|+ +.+ |++++|+| ||||||||+ ++.+ ++..+ ..++ |+
T Consensus 761 l~~~~~~--~~~v~ndi~l~-~~~~~~~~~~g~i~~ItG-pNgsGKSTl-Lr~i-Gl~~~-----------~aqiG~~Vp 823 (1022)
T 2o8b_B 761 ITKTFFG--DDFIPNDILIG-CEEEEQENGKAYCVLVTG-PNMGGKSTL-MRQA-GLLAV-----------MAQMGCYVP 823 (1022)
T ss_dssp ------C--CCCCCEEEEES-CCCSCC---CCCEEEEEC-CTTSSHHHH-HHHH-HHHHH-----------HHTTTCCEE
T ss_pred EEEEecC--CceEeeeeeec-cccccccCCCCcEEEEEC-CCCCChHHH-HHHH-HHHHH-----------HhheeEEec
Confidence 3445532 36799999999 987 99999999 999999999 5656 55432 1233 34
Q ss_pred cCCCcccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 79 QNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 79 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
|.+. .+ .. .+.++..++. .+......+++|+++++ +++|++++ ++|+++|||||++|+|+...
T Consensus 824 q~~~--~l-~v---~d~I~~rig~----~d~~~~~~stf~~em~~-~a~al~la----~~~sLlLLDEp~~Gtd~~dg 886 (1022)
T 2o8b_B 824 AEVC--RL-TP---IDRVFTRLGA----SDRIMSGESTFFVELSE-TASILMHA----TAHSLVLVDELGRGTATFDG 886 (1022)
T ss_dssp SSEE--EE-CC---CSBEEEECC-------------CHHHHHHHH-HHHHHHHC----CTTCEEEEECTTTTSCHHHH
T ss_pred cCcC--CC-CH---HHHHHHHcCC----HHHHhhchhhhHHHHHH-HHHHHHhC----CCCcEEEEECCCCCCChHHH
Confidence 4331 11 11 1112333444 34444456778887775 89999985 78999999999999999874
No 83
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=2.6e-16 Score=143.30 Aligned_cols=113 Identities=9% Similarity=-0.067 Sum_probs=70.7
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhc-cccCCCcccccCCCCCchhHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMA-LAQNQSAQAFLGPENPEEPYL 97 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~-~~q~~~~~~~~~~~~~~~~~~ 97 (163)
..+++|++|+ +++|++++|+| ||||||||+ +++++.+.. ..++ .+.......+ + ..+.++
T Consensus 649 ~~v~ndisl~-~~~g~i~~ItG-pNGsGKSTl-Lr~ial~~~------------~aq~G~~vpa~~~~~-~---~~d~i~ 709 (934)
T 3thx_A 649 AFIPNDVYFE-KDKQMFHIITG-PNMGGKSTY-IRQTGVIVL------------MAQIGCFVPCESAEV-S---IVDCIL 709 (934)
T ss_dssp CCCCEEEEEE-TTTBCEEEEEC-CTTSSHHHH-HHHHHHHHH------------HHHHTCCBSEEEEEE-E---CCSEEE
T ss_pred eeecccceee-cCCCeEEEEEC-CCCCCHHHH-HHHHHHHHH------------HHhcCCccccccccc-h---HHHHHH
Confidence 4688899999 99999999999 999999999 555533221 0111 1111111000 0 011223
Q ss_pred HhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHH
Q psy17517 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i 159 (163)
..++. . +.....+|+++.++..+|+++.. +++|+++||||||+|+|+.....+
T Consensus 710 ~~ig~----~---d~l~~~lStf~~e~~~~a~il~~--a~~~sLlLLDEp~~GlD~~~~~~i 762 (934)
T 3thx_A 710 ARVGA----G---DSQLKGVSTFMAEMLETASILRS--ATKDSLIIIDELGRGTSTYDGFGL 762 (934)
T ss_dssp EECC----------------CHHHHHHHHHHHHHHH--CCTTCEEEEESCSCSSCHHHHHHH
T ss_pred HhcCc----h---hhHHHhHhhhHHHHHHHHHHHHh--ccCCcEEEEeCCCCCCCHHHHHHH
Confidence 33333 2 22345688888888888888843 488999999999999999887665
No 84
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.60 E-value=3e-18 Score=136.51 Aligned_cols=112 Identities=9% Similarity=-0.027 Sum_probs=64.4
Q ss_pred eEEeecCCCCChHHHHHHHHHhccccc--cccc--c--cCHHHHHHhc--cccCCC---------cccccCCCC--Cchh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAIHRI--ATIR--S--LGLEDLRSMA--LAQNQS---------AQAFLGPEN--PEEP 95 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l~~~--~~i~--~--~~~~~~~~~~--~~q~~~---------~~~~~~~~~--~~~~ 95 (163)
.++++| ||||||||| +++++++..| +.+. + .+....++.+ ++|++. +..|..... ....
T Consensus 4 ~v~lvG-~nGaGKSTL-ln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVG-QSGLGKSTL-VNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEE-SSSSSHHHH-HHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEEC-CCCCCHHHH-HHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999 999999999 6777777766 2111 1 1111112223 445431 111111100 1111
Q ss_pred HHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHH
Q psy17517 96 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159 (163)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i 159 (163)
.+..+.. ....+..+.+||||||||+++|||++ .++++|||+++||+.....+
T Consensus 82 ~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~-------~lllldep~~gL~~lD~~~l 134 (270)
T 3sop_A 82 PIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHC-------CLYFISPTGHSLRPLDLEFM 134 (270)
T ss_dssp HHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCE-------EEEEECCCSSSCCHHHHHHH
T ss_pred HHHHHHH----HHHHhhhHHhcCcccchhhhhheeee-------eeEEEecCCCcCCHHHHHHH
Confidence 2222222 23445566799999999999999984 49999999999999875544
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.59 E-value=9.4e-16 Score=131.93 Aligned_cols=117 Identities=9% Similarity=-0.110 Sum_probs=74.3
Q ss_pred eeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCccccc---CCCCCchhHHHhchh
Q psy17517 26 NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFL---GPENPEEPYLQGVNY 102 (163)
Q Consensus 26 sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~~~~~ 102 (163)
+.. +.+|++++|+| +||||||||++. +.+...+. +... -.+.++++..+++. ......++ +...++
T Consensus 275 ~g~-i~~G~i~~i~G-~~GsGKSTLl~~-l~g~~~~~---G~~v----i~~~~ee~~~~l~~~~~~~g~~~~~-~~~~g~ 343 (525)
T 1tf7_A 275 GGG-FFKDSIILATG-ATGTGKTLLVSR-FVENACAN---KERA----ILFAYEESRAQLLRNAYSWGMDFEE-MERQNL 343 (525)
T ss_dssp TSS-EESSCEEEEEE-CTTSSHHHHHHH-HHHHHHTT---TCCE----EEEESSSCHHHHHHHHHTTSCCHHH-HHHTTS
T ss_pred CCC-CCCCcEEEEEe-CCCCCHHHHHHH-HHHHHHhC---CCCE----EEEEEeCCHHHHHHHHHHcCCCHHH-HHhCCC
Confidence 347 99999999999 999999999544 44443321 0000 00112222111110 00001111 112233
Q ss_pred cccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHH-----HHHHHHhh
Q psy17517 103 NCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNT-----NIGKVASY 162 (163)
Q Consensus 103 ~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~-----~~~~i~~~ 162 (163)
....+.++.+|||||+||+++|++++ .+|+++|+| ||++||.. .+..+.++
T Consensus 344 ----~~~~~~~p~~LS~g~~q~~~~a~~l~----~~p~llilD-p~~~Ld~~~~~~~~~~~i~~l 399 (525)
T 1tf7_A 344 ----LKIVCAYPESAGLEDHLQIIKSEIND----FKPARIAID-SLSALARGVSNNAFRQFVIGV 399 (525)
T ss_dssp ----EEECCCCGGGSCHHHHHHHHHHHHHT----TCCSEEEEE-CHHHHTSSSCHHHHHHHHHHH
T ss_pred ----EEEEEeccccCCHHHHHHHHHHHHHh----hCCCEEEEc-ChHHHHhhCChHHHHHHHHHH
Confidence 34556778899999999999999995 789999999 99999998 77776553
No 86
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.56 E-value=2.2e-15 Score=110.19 Aligned_cols=50 Identities=34% Similarity=0.483 Sum_probs=44.0
Q ss_pred ccCCCCCCCCHHHHHHHHHH------HHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 109 KRFQPMTNLSGGEKTVAALA------LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 109 ~~~~~~~~LSgGqkQrvaiA------raL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..++++.+||||||||++|| |+|+ .+|++++|||||++||+.++..+.+.
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~----~~p~lllLDEPt~~LD~~~~~~l~~~ 105 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLA----GEISLLILDEPTPYLDEERRRKLITI 105 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHH----SSCSEEEEESCSCTTCHHHHHHHHHH
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHc----CCCCEEEEECCCccCCHHHHHHHHHH
Confidence 45678899999999999886 7775 78999999999999999999988764
No 87
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=8.1e-16 Score=115.89 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=81.3
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc-----cc--c-----------------c
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH-----RI--A-----------------T 63 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~-----~~--~-----------------~ 63 (163)
+.+|.|+ .+++++ |+ +.+|+.++++| +||||||||+ +.+.+.. .+ . +
T Consensus 8 ~~~~~~~----~~~l~~--~~-~~~~~~v~lvG-~~g~GKSTLl-~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 8 QTHFVMS----APDIRH--LP-SDTGIEVAFAG-RSNAGKSSAL-NTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp ---CEEE----ESSGGG--SS-CSCSEEEEEEE-CTTSSHHHHH-TTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhheee----cCCHhH--CC-CCCCcEEEEEC-CCCCCHHHHH-HHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 5678884 268888 98 99999999999 9999999994 4445544 22 0 0
Q ss_pred ccccC--------HHHHHHhc--cccCC---Cccccc-CCC--CCc--hh---HHHhchhcccCCC-ccCCCCCCCCHHH
Q psy17517 64 IRSLG--------LEDLRSMA--LAQNQ---SAQAFL-GPE--NPE--EP---YLQGVNYNCVAPG-KRFQPMTNLSGGE 121 (163)
Q Consensus 64 i~~~~--------~~~~~~~~--~~q~~---~~~~~~-~~~--~~~--~~---~~~~~~~~~~~~~-~~~~~~~~LSgGq 121 (163)
..+.. ...+++.+ .++.. +..++. ... ... .. ++...++ .. ....++..+|+||
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNI----AVLVLLTKADKLASGA 154 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTC----CEEEEEECGGGSCHHH
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCC----CeEEEEecccCCCchh
Confidence 00110 01222222 23221 111110 000 011 11 2222222 11 2245677899999
Q ss_pred HHH-HHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 122 KTV-AALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 122 kQr-vaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+|| +..+++++ ++|.++++|||||++|..+..++.+.
T Consensus 155 ~~~~~~~~~~~~----~~~~~~~~~~~~Sal~~~~~~~l~~~ 192 (210)
T 1pui_A 155 RKAQLNMVREAV----LAFNGDVQVETFSSLKKQGVDKLRQK 192 (210)
T ss_dssp HHHHHHHHHHHH----GGGCSCEEEEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHHHHHH----HhcCCCCceEEEeecCCCCHHHHHHH
Confidence 999 78999986 56888899999999999999888764
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.54 E-value=4.1e-15 Score=118.67 Aligned_cols=124 Identities=9% Similarity=0.042 Sum_probs=68.2
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-c-cc----cccCHHHHHHhcccc--CCCcccc--c-
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-A-TI----RSLGLEDLRSMALAQ--NQSAQAF--L- 87 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~-~i----~~~~~~~~~~~~~~q--~~~~~~~--~- 87 (163)
.++|+++++. +++|++++|+| |||||||||++.+.+.+... . .+ .+.+..+++++++.+ ......+ .
T Consensus 22 ~~~Ld~i~~~-l~~G~~~~i~G-~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~ 99 (296)
T 1cr0_A 22 CTGINDKTLG-ARGGEVIMVTS-GSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLK 99 (296)
T ss_dssp CTTHHHHHCS-BCTTCEEEEEE-STTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHHhcC-CCCCeEEEEEe-CCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccc
Confidence 5799999999 99999999999 99999999965443333221 1 12 123344555554222 2211110 0
Q ss_pred -C-CC-CCchhHHHhchhcccCCCccCCCCCCCCHHH-HHHHHHHHHHHhcccCCCCEEEeecccCCC
Q psy17517 88 -G-PE-NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGE-KTVAALALLFAIHSYHPAPFFVLDEIDAAL 151 (163)
Q Consensus 88 -~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq-kQrvaiAraL~~~~~~~p~lllLDEPts~L 151 (163)
. .. .......+.+ +... .-.....+..+|.+| +||+. |++++ ++|+++|+||||+.+
T Consensus 100 ~~~~~~~~~~~~~~~~-l~~~-~l~i~~~~~~~~~~~l~~~~~-a~~~~----~~p~llilDept~~~ 160 (296)
T 1cr0_A 100 REIIENGKFDQWFDEL-FGND-TFHLYDSFAEAETDRLLAKLA-YMRSG----LGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHTHHHHHHHHH-HSSS-CEEEECCCCSCCHHHHHHHHH-HHHHT----TCCSEEEEEEEC---
T ss_pred cCCCCHHHHHHHHHHH-hccC-CEEEECCCCCCCHHHHHHHHH-HHHHh----cCCCEEEEcCccccC
Confidence 0 00 0000111111 0000 001122345788888 66666 88774 789999999999943
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.50 E-value=4e-16 Score=134.21 Aligned_cols=128 Identities=7% Similarity=-0.014 Sum_probs=76.0
Q ss_pred eCCCCCCCCcccCeee-EeeCCCCeEEeecCCCCChHHHHHHHH-Hhccccc----ccccccC----HHHHHHhc--ccc
Q psy17517 12 LGPENPEEPYLQGVNY-NCVAPGKRFQPMTNLSGGEKTVAALAL-LFAIHRI----ATIRSLG----LEDLRSMA--LAQ 79 (163)
Q Consensus 12 ~y~~~~~~~~l~~vsl-~~i~~Ge~~~lvG~~nGsGKSTl~l~l-~~~l~~~----~~i~~~~----~~~~~~~~--~~q 79 (163)
.|++ +.++|++|++ . +++|++++|+| |||||||||++.+ +.++.++ ..+...+ ..+.++.+ ++|
T Consensus 20 ~~~~--g~~~Ld~i~~G~-i~~Ge~~~l~G-~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q 95 (525)
T 1tf7_A 20 KMRT--MIEGFDDISHGG-LPIGRSTLVSG-TSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA 95 (525)
T ss_dssp EECC--CCTTHHHHTTSS-EETTSEEEEEE-STTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred cccC--CchhHHHhcCCC-CCCCeEEEEEc-CCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence 3444 4789999999 9 99999999999 9999999996543 4676654 1122221 12223334 556
Q ss_pred CCCcc--ccc-CCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCC-----C
Q psy17517 80 NQSAQ--AFL-GPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAA-----L 151 (163)
Q Consensus 80 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~-----L 151 (163)
++... ++. .... ..........+.- ..+...+.+.|.. .+|+++++||||+. +
T Consensus 96 ~~~~~~~l~~~~~~~---------------~~~~~~~l~~~~l-~~~~~~~~~~LS~---g~~~~lilDe~t~~~~~~~l 156 (525)
T 1tf7_A 96 KLVDEGKLFILDASP---------------DPEGQEVVGGFDL-SALIERINYAIQK---YRARRVSIDSVTSVFQQYDA 156 (525)
T ss_dssp HHHHTTSEEEEECCC---------------CSSCCSCCSSHHH-HHHHHHHHHHHHH---HTCSEEEEECSTTTSTTTCC
T ss_pred HhhccCcEEEEecCc---------------ccchhhhhcccCH-HHHHHHHHHHHHH---cCCCEEEECCHHHHHHhcCC
Confidence 54321 111 0000 0000011112222 2345556666642 57999999999984 6
Q ss_pred CHHHHHHHHhh
Q psy17517 152 DNTNIGKVASY 162 (163)
Q Consensus 152 D~~~~~~i~~~ 162 (163)
|+..+..+.++
T Consensus 157 D~~~~~~l~~l 167 (525)
T 1tf7_A 157 SSVVRRELFRL 167 (525)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88988888765
No 90
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.49 E-value=8.4e-16 Score=129.97 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=81.9
Q ss_pred CccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--c--cccc---CH---------
Q psy17517 6 QSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--T--IRSL---GL--------- 69 (163)
Q Consensus 6 ~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~--i~~~---~~--------- 69 (163)
..++++.|.+ +..+|+++ |+ +.+||+++|+| ||||||||| ++++.++..+. . +.+. +.
T Consensus 134 ~~~v~~~~~t--g~~vld~v-l~-i~~Gq~~~IvG-~sGsGKSTL-l~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 134 RTPIEHVLDT--GVRAINAL-LT-VGRGQRMGLFA-GSGVGKSVL-LGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp SCCCCSBCCC--SCHHHHHH-SC-CBTTCEEEEEE-CTTSSHHHH-HHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred EeccceecCC--CceEEeee-EE-ecCCCEEEEEC-CCCCCHHHH-HHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 3467788864 36799999 99 99999999999 999999999 67777777661 1 1122 11
Q ss_pred -HHHHHhc--cccCCCcccccCCCCCc--hhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEe
Q psy17517 70 -EDLRSMA--LAQNQSAQAFLGPENPE--EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVL 144 (163)
Q Consensus 70 -~~~~~~~--~~q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllL 144 (163)
..+++.+ ++|.... .+....... ....+.+..........-..+..||+|| ||++|| + .+|++
T Consensus 208 ~~~l~r~i~~v~q~~~~-~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--l-----~~p~~--- 275 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVS-PLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--I-----GEPPA--- 275 (438)
T ss_dssp HHHHHTEEEEEECTTSC-HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--T-----TCCCC---
T ss_pred ccccCceEEEEECCCCC-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--h-----CCCcc---
Confidence 1234444 3443211 110000000 0001111100000000012367899999 999999 3 68888
Q ss_pred ecccCCCCHHHHHHHHhh
Q psy17517 145 DEIDAALDNTNIGKVASY 162 (163)
Q Consensus 145 DEPts~LD~~~~~~i~~~ 162 (163)
|++||+....++.++
T Consensus 276 ---t~glD~~~~~~l~~l 290 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPAL 290 (438)
T ss_dssp ---SSSCCTTHHHHHHHH
T ss_pred ---cccCCHHHHHHHHHH
Confidence 999999999988765
No 91
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.49 E-value=9.1e-15 Score=130.91 Aligned_cols=114 Identities=15% Similarity=0.055 Sum_probs=70.9
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHH
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYL 97 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 97 (163)
+..+++|+||+ |++++|+| ||||||||+ +++++++..+......-.. .+..+.+.. ++|
T Consensus 565 ~~~vl~disl~----g~i~~I~G-pNGsGKSTl-Lr~iagl~~~~~~G~~vpa-~~~~i~~v~---~i~----------- 623 (765)
T 1ewq_A 565 TEFVPNDLEMA----HELVLITG-PNMAGKSTF-LRQTALIALLAQVGSFVPA-EEAHLPLFD---GIY----------- 623 (765)
T ss_dssp SCCCCEEEEES----SCEEEEES-CSSSSHHHH-HHHHHHHHHHHTTTCCBSS-SEEEECCCS---EEE-----------
T ss_pred CceEeeeccCC----CcEEEEEC-CCCCChHHH-HHHHHhhhhhcccCceeeh-hccceeeHH---Hhh-----------
Confidence 45788998886 99999999 999999999 5666666531111100000 011111111 011
Q ss_pred HhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecc---cCCCCHHHH-HHHHh
Q psy17517 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEI---DAALDNTNI-GKVAS 161 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP---ts~LD~~~~-~~i~~ 161 (163)
..++. .+.-...+|+|+++++.+++++.. +++|+++||||| |++||..+. ..+.+
T Consensus 624 ~~~~~-------~d~l~~g~S~~~~e~~~la~il~~--a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~ 682 (765)
T 1ewq_A 624 TRIGA-------SDDLAGGKSTFMVEMEEVALILKE--ATENSLVLLDEVGRGTSSLDGVAIATAVAE 682 (765)
T ss_dssp EECCC-------------CCSHHHHHHHHHHHHHHH--CCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred ccCCH-------HHHHHhcccHHHHHHHHHHHHHHh--ccCCCEEEEECCCCCCCCcCHHHHHHHHHH
Confidence 11111 111123579999999999999843 488999999999 999999875 34544
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=1e-13 Score=109.89 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=65.9
Q ss_pred EeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCc---ccc-----cCCCC---CchhH
Q psy17517 28 NCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSA---QAF-----LGPEN---PEEPY 96 (163)
Q Consensus 28 ~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~---~~~-----~~~~~---~~~~~ 96 (163)
. +++|++++|+| |||||||||++.++..+..-..+.+..... ...+++...+. .+. .+... ....+
T Consensus 26 g-l~~G~i~~i~G-~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~-~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~ 102 (279)
T 1nlf_A 26 N-MVAGTVGALVS-PGGAGKSMLALQLAAQIAGGPDLLEVGELP-TGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAV 102 (279)
T ss_dssp T-EETTSEEEEEE-STTSSHHHHHHHHHHHHHTCCCTTCCCCCC-CCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred C-ccCCCEEEEEc-CCCCCHHHHHHHHHHHHhcCCCcCCCccCC-CccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhc
Confidence 5 88999999999 999999999765554332210010000000 00111111000 000 00000 01123
Q ss_pred HHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccC--CCCHHHH
Q psy17517 97 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA--ALDNTNI 156 (163)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts--~LD~~~~ 156 (163)
++.+.+ ....+..+..||+||.|++ ++++ .+|+++|+||||+ ++|....
T Consensus 103 ~~~l~l----~~~~~~~~~~ls~g~~~~i---~~l~----~~~~livlDe~~~~~~~d~~~~ 153 (279)
T 1nlf_A 103 ADGLLI----QPLIGSLPNIMAPEWFDGL---KRAA----EGRRLMVLDTLRRFHIEEENAS 153 (279)
T ss_dssp HHHEEE----CCCTTSCCCTTSHHHHHHH---HHHH----TTCSEEEEECGGGGCCSCTTCH
T ss_pred cCceEE----eecCCCCcccCCHHHHHHH---HHhc----CCCCEEEECCHHHhcCCCcCch
Confidence 445555 4556778999999998765 5664 6799999999999 9997543
No 93
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.47 E-value=6.9e-17 Score=123.02 Aligned_cols=38 Identities=18% Similarity=0.081 Sum_probs=23.2
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~ 60 (163)
..++++| .+ +++||+++|+| ||||||||| ++++.++.+
T Consensus 8 ~~~~~~~--~~-i~~Gei~~l~G-pnGsGKSTL-l~~l~gl~~ 45 (207)
T 1znw_A 8 TKPTARG--QP-AAVGRVVVLSG-PSAVGKSTV-VRCLRERIP 45 (207)
T ss_dssp --------------CCCEEEEEC-STTSSHHHH-HHHHHHHST
T ss_pred CCcCCCC--CC-CCCCCEEEEEC-CCCCCHHHH-HHHHHhhCC
Confidence 3468888 78 99999999999 999999999 566666653
No 94
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.46 E-value=3.4e-15 Score=122.84 Aligned_cols=137 Identities=9% Similarity=0.038 Sum_probs=80.9
Q ss_pred CccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc--c--ccccCHHHHHHhccccCC
Q psy17517 6 QSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA--T--IRSLGLEDLRSMALAQNQ 81 (163)
Q Consensus 6 ~~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~--~--i~~~~~~~~~~~~~~q~~ 81 (163)
..++++.|.+ +..+++++ |+ |.+||+++|+| ||||||||| ++++.++..+. . +.+....+++..+.....
T Consensus 48 ~~~l~~~~~t--g~~ald~l-l~-i~~Gq~~gIiG-~nGaGKTTL-l~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 48 RQVIDQPFIL--GVRAIDGL-LT-CGIGQRIGIFA-GSGVGKSTL-LGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CCCCCSEECC--SCHHHHHH-SC-EETTCEEEEEE-CTTSSHHHH-HHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred ecccceecCC--CCEEEEee-ee-ecCCCEEEEEC-CCCCCHHHH-HHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 3456677764 36799999 99 99999999999 999999999 67777777662 1 122233333322211000
Q ss_pred ----CcccccCCCC-C-ch---hHHHhchhcc---c-CCC--ccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeec
Q psy17517 82 ----SAQAFLGPEN-P-EE---PYLQGVNYNC---V-APG--KRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE 146 (163)
Q Consensus 82 ----~~~~~~~~~~-~-~~---~~~~~~~~~~---~-~~~--~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDE 146 (163)
....+..... . .+ .....+.+.. . ..+ ..-..+.+||+|| ||+++| + .+|++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--l-----~~p~~----- 188 (347)
T 2obl_A 122 STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--S-----GEPDV----- 188 (347)
T ss_dssp HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH--T-----TCCCC-----
T ss_pred hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH--c-----CCCCc-----
Confidence 0011111100 0 11 1111111100 0 000 0014578899999 899999 3 57887
Q ss_pred ccCCCCHHHHHHHHhh
Q psy17517 147 IDAALDNTNIGKVASY 162 (163)
Q Consensus 147 Pts~LD~~~~~~i~~~ 162 (163)
|+|+|+....++.++
T Consensus 189 -t~Gldp~~~~~l~~l 203 (347)
T 2obl_A 189 -RGGFPPSVFSSLPKL 203 (347)
T ss_dssp -BTTBCHHHHHHHHHH
T ss_pred -ccCCCHHHHHHHHHH
Confidence 999999999988765
No 95
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.46 E-value=1.5e-16 Score=120.80 Aligned_cols=117 Identities=12% Similarity=-0.064 Sum_probs=70.8
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhccccc------cc--c---cccCHHHHHHhccccCCCcccccCCCCCchhHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAIHRI------AT--I---RSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQ 98 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~------~~--i---~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 98 (163)
.++|++++|+| ||||||||| .+++.++..+ .+ . ...+..+ +..+.+..+. .+ ......+.++
T Consensus 3 ~~~~~~i~i~G-~~GsGKSTl-~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~-~~~~~~~~~~--~~--~~~~~~~~l~ 75 (211)
T 3asz_A 3 APKPFVIGIAG-GTASGKTTL-AQALARTLGERVALLPMDHYYKDLGHLPLEE-RLRVNYDHPD--AF--DLALYLEHAQ 75 (211)
T ss_dssp --CCEEEEEEE-STTSSHHHH-HHHHHHHHGGGEEEEEGGGCBCCCTTSCHHH-HHHSCTTSGG--GB--CHHHHHHHHH
T ss_pred CCCcEEEEEEC-CCCCCHHHH-HHHHHHHhCCCeEEEecCccccCcccccHHH-hcCCCCCChh--hh--hHHHHHHHHH
Confidence 67899999999 999999999 4556665442 00 0 1111111 1111111110 00 0001123445
Q ss_pred hchhcccCCCccCCCCCCCCHHH----HHHHHHHHHHHhcccCCCCEEEeecccCC-------CCHHHHHHHHh
Q psy17517 99 GVNYNCVAPGKRFQPMTNLSGGE----KTVAALALLFAIHSYHPAPFFVLDEIDAA-------LDNTNIGKVAS 161 (163)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~LSgGq----kQrvaiAraL~~~~~~~p~lllLDEPts~-------LD~~~~~~i~~ 161 (163)
.+++ .+..+.++..+|+|| +||+++|+++ +.+|+++++||||++ ||+....++.+
T Consensus 76 ~~~~----~~~~~~~~~~~s~g~~~~~~~~~~~~~~l----i~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 76 ALLR----GLPVEMPVYDFRAYTRSPRRTPVRPAPVV----ILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHT----TCCEEECCEETTTTEECSSCEEECCCSEE----EEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHc----CCCcCCCcccCcccCCCCCeEEeCCCcEE----EEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 5555 445556788899996 4788899988 467999999999999 89877766654
No 96
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.45 E-value=6.4e-14 Score=125.98 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=63.8
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHH
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYL 97 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 97 (163)
+..+++|++|+ ++|++++|+| ||||||||+ +++++++.....+. .+..... ...+.. ..+.
T Consensus 594 ~~~vlndisl~--~~g~i~~ItG-pNGsGKSTl-Lr~iagl~~~~q~G-----------~~vpa~~-~~i~~~---~~i~ 654 (800)
T 1wb9_A 594 EPFIANPLNLS--PQRRMLIITG-PNMGGKSTY-MRQTALIALMAYIG-----------SYVPAQK-VEIGPI---DRIF 654 (800)
T ss_dssp SCCCCEEEEEC--SSSCEEEEEC-CTTSSHHHH-HHHHHHHHHHHTTT-----------CCBSSSE-EEECCC---CEEE
T ss_pred Cceeeeccccc--CCCcEEEEEC-CCCCChHHH-HHHHHHHHHHHhcC-----------cccchhc-ccceeH---HHHH
Confidence 45689999997 8999999999 999999999 56666654221110 0111100 000000 0011
Q ss_pred HhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHH
Q psy17517 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159 (163)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i 159 (163)
..++. .+......+++|+++++...+.+ . +++|+++|||||++|+|+.....+
T Consensus 655 ~~~~~----~d~l~~~~stf~~e~~~~~~il~-~----a~~psLlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 655 TRVGA----ADDLASGRSTFMVEMTETANILH-N----ATEYSLVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp EEEC---------------CHHHHHHHHHHHH-H----CCTTEEEEEESCCCCSSSSHHHHH
T ss_pred hhCCH----HHHHHhhhhhhhHHHHHHHHHHH-h----ccCCCEEEEECCCCCCChhHHHHH
Confidence 12222 22222334567888776544433 3 489999999999999888765543
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.41 E-value=3e-14 Score=112.84 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=61.2
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc---cc--cccCHHHHHHhccccCCCcccccCCCCCch
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA---TI--RSLGLEDLRSMALAQNQSAQAFLGPENPEE 94 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~---~i--~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 94 (163)
++|+++| +++|++++++| ||||||||| ++++.++..+. .+ .+.+. .++++.+. .+..
T Consensus 15 ~vl~~i~---i~~g~~v~i~G-p~GsGKSTl-l~~l~g~~~~~~~G~I~~~g~~i-----~~~~~~~~--~~v~------ 76 (261)
T 2eyu_A 15 DKVLELC---HRKMGLILVTG-PTGSGKSTT-IASMIDYINQTKSYHIITIEDPI-----EYVFKHKK--SIVN------ 76 (261)
T ss_dssp THHHHGG---GCSSEEEEEEC-STTCSHHHH-HHHHHHHHHHHCCCEEEEEESSC-----CSCCCCSS--SEEE------
T ss_pred HHHHHHh---hCCCCEEEEEC-CCCccHHHH-HHHHHHhCCCCCCCEEEEcCCcc-----eeecCCcc--eeee------
Confidence 5888877 78999999999 999999999 55566665442 11 11110 01111110 0000
Q ss_pred hHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHH
Q psy17517 95 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVA 160 (163)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~ 160 (163)
-..+++ . ...| |++||++|+ ++|+++++|||| |+++...+.
T Consensus 77 --q~~~gl----~------~~~l------~~~la~aL~----~~p~illlDEp~---D~~~~~~~l 117 (261)
T 2eyu_A 77 --QREVGE----D------TKSF------ADALRAALR----EDPDVIFVGEMR---DLETVETAL 117 (261)
T ss_dssp --EEEBTT----T------BSCH------HHHHHHHHH----HCCSEEEESCCC---SHHHHHHHH
T ss_pred --HHHhCC----C------HHHH------HHHHHHHHh----hCCCEEEeCCCC---CHHHHHHHH
Confidence 011222 1 1122 899999997 579999999999 988866543
No 98
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.41 E-value=2.5e-13 Score=103.23 Aligned_cols=128 Identities=12% Similarity=0.047 Sum_probs=71.8
Q ss_pred CCcccCeee-EeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-ccc----cccCHHHHHHhc---cccCCCcccccCC
Q psy17517 19 EPYLQGVNY-NCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-ATI----RSLGLEDLRSMA---LAQNQSAQAFLGP 89 (163)
Q Consensus 19 ~~~l~~vsl-~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~~i----~~~~~~~~~~~~---~~q~~~~~~~~~~ 89 (163)
.+.|+++.. . +++|++++|+| |||||||||++.+....... ..+ .+....++.... .+..+. +..
T Consensus 9 ~~~Ld~~~~gg-i~~G~~~~i~G-~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 82 (235)
T 2w0m_A 9 ILDFDKLIQGG-IPQGFFIALTG-EPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEE---YIE- 82 (235)
T ss_dssp CHHHHGGGTTS-EETTCEEEEEC-STTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGG---GBT-
T ss_pred chHHHHHhcCC-CcCCCEEEEEc-CCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHH---Hhh-
Confidence 578999998 8 99999999999 99999999965554333221 111 112223332221 111100 000
Q ss_pred CCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC--EEEeecccCCC--CHHHHHHHHhh
Q psy17517 90 ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP--FFVLDEIDAAL--DNTNIGKVASY 162 (163)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~--lllLDEPts~L--D~~~~~~i~~~ 162 (163)
. ....++.+... .. ........|.++.++...+.+.. .+|+ ++++||||+.+ |+....++.+.
T Consensus 83 ~--~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~llilDe~~~~~~~d~~~~~~~~~~ 149 (235)
T 2w0m_A 83 K--KLIIIDALMKE---KE-DQWSLVNLTPEELVNKVIEAKQK----LGYGKARLVIDSVSALFLDKPAMARKISYY 149 (235)
T ss_dssp T--TEEEEECCC--------CTTBCSSCCHHHHHHHHHHHHHH----HCSSCEEEEEETGGGGSSSCGGGHHHHHHH
T ss_pred C--CEEEEeccccc---cC-ceeeecCCCHHHHHHHHHHHHHh----hCCCceEEEEECchHhhcCCHHHHHHHHHH
Confidence 0 00000000000 00 00011244889888877766653 5799 99999999888 98777666543
No 99
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.40 E-value=2.1e-13 Score=124.01 Aligned_cols=50 Identities=26% Similarity=0.326 Sum_probs=44.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCCC--EEEeecccCCCCHHHHHHHHhhC
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPAP--FFVLDEIDAALDNTNIGKVASYI 163 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~--lllLDEPts~LD~~~~~~i~~~l 163 (163)
.++++.+|||||||||+|||+|+ ++|+ ++||||||++||+....++.++|
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~----~~p~~~lllLDEPT~gLD~~~~~~l~~~L 509 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIG----SGLTGVIYVLDEPTIGLHPRDTERLIKTL 509 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHH----TTCCSCEEEEECTTTTCCGGGHHHHHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHHHh----hCCCCcEEEEECCccCCCHHHHHHHHHHH
Confidence 57889999999999999999997 5565 99999999999999999888753
No 100
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.37 E-value=4.8e-15 Score=112.26 Aligned_cols=115 Identities=13% Similarity=-0.030 Sum_probs=65.8
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhccccc-c-ccccc---CHHHHHHhc--cccCCCcccccCCCCCchhHHHhchhccc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFAIHRI-A-TIRSL---GLEDLRSMA--LAQNQSAQAFLGPENPEEPYLQGVNYNCV 105 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~-~i~~~---~~~~~~~~~--~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (163)
|++++++| |||||||||+ +++.++... . .+.+. ....+++++ ++|.... . ...+..+.....
T Consensus 1 G~~i~i~G-~nG~GKTTll-~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g--------~-~~~l~~~~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTG-PPGVGKTTLI-HKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSG--------T-RGPLSRVGLEPP 69 (189)
T ss_dssp CCCEEEES-CCSSCHHHHH-HHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTS--------C-EEEEEECCCCCC
T ss_pred CCEEEEEC-CCCChHHHHH-HHHHhhcccCCEEEcCEecchhHhhhceEEEEEEeccc--------c-eehhhcccccCC
Confidence 78999999 9999999994 555554421 1 01110 011123333 2222210 0 011112221000
Q ss_pred ---CCCccCCCCCCCCHHHHHHH-HHHH---HHHhcccCCCCEEEeec--ccCCCCHHHHHHHHhh
Q psy17517 106 ---APGKRFQPMTNLSGGEKTVA-ALAL---LFAIHSYHPAPFFVLDE--IDAALDNTNIGKVASY 162 (163)
Q Consensus 106 ---~~~~~~~~~~~LSgGqkQrv-aiAr---aL~~~~~~~p~lllLDE--Pts~LD~~~~~~i~~~ 162 (163)
......++...+|+|||+++ ++++ |+ .++|+++|+|| |+..+|+.....+.++
T Consensus 70 ~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~----~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 PGKRECRVGQYVVDLTSFEQLALPVLRNADCSS----GPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCC----SSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ccccccccceEEEcchHHHHHHHHHHhhhhHhh----ccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 01134556678999999888 4444 34 47899999999 8999999887777654
No 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.36 E-value=3.4e-15 Score=120.38 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=57.0
Q ss_pred ccceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc-cccc-ccc--cc---CHHHHHHhc--c
Q psy17517 7 SAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI-HRIA-TIR--SL---GLEDLRSMA--L 77 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l-~~~~-~i~--~~---~~~~~~~~~--~ 77 (163)
.+.++.|. ++.++++++|+ | +++| +||+||||| ++.+++. ..+. .+. +. ..... ..+ +
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~-I------~lvG-~nG~GKSTL-l~~L~g~~~~~~~gi~~~g~~~~~t~~~-~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFT-L------MVVG-ESGLGKSTL-INSLFLTDLYPERVISGAAEKIERTVQI-EASTVE 68 (301)
T ss_dssp -------------------CEE-E------EEEE-ETTSSHHHH-HHHHHC-------------------------CEEE
T ss_pred CCCcceEC---CEEEEcCCCEE-E------EEEC-CCCCCHHHH-HHHHhCCCccCCCCcccCCcccCCcceE-eeEEEE
Confidence 35667774 36799999999 7 8999 999999999 5555554 3331 111 00 01111 112 3
Q ss_pred ccCCCccc----c--cCC--C----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEee
Q psy17517 78 AQNQSAQA----F--LGP--E----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLD 145 (163)
Q Consensus 78 ~q~~~~~~----~--~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLD 145 (163)
+|...... . .+. . .....+.+.+ ....+.++.++|||||||+.+||++ .++++|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~--------~ll~ld 134 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVH--------CCFYFI 134 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCC--------EEEEEE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhh--------heeeee
Confidence 33221100 0 010 0 0011112111 1223466788999999999999887 399999
Q ss_pred cccCC-CCHHHHH
Q psy17517 146 EIDAA-LDNTNIG 157 (163)
Q Consensus 146 EPts~-LD~~~~~ 157 (163)
|||++ ||+....
T Consensus 135 ePt~~~Ld~~~~~ 147 (301)
T 2qnr_A 135 SPFGHGLKPLDVA 147 (301)
T ss_dssp CSSSSSCCHHHHH
T ss_pred cCcccCCCHHHHH
Confidence 99985 9998753
No 102
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.36 E-value=1.6e-13 Score=105.69 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=25.9
Q ss_pred CcccCeee-EeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 20 PYLQGVNY-NCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 20 ~~l~~vsl-~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+.|+.+-- . |++|++++|+| |||||||||++.+.
T Consensus 17 ~~lD~~l~Gg-i~~G~~~~l~G-pnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 17 PGFDELIEGG-FPEGTTVLLTG-GTGTGKTTFAAQFI 51 (251)
T ss_dssp TTTGGGTTTS-EETTCEEEEEC-CTTSSHHHHHHHHH
T ss_pred HhHHHHhcCC-CCCCcEEEEEe-CCCCCHHHHHHHHH
Confidence 34554421 6 99999999999 99999999954433
No 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.32 E-value=1.3e-12 Score=109.70 Aligned_cols=55 Identities=73% Similarity=1.097 Sum_probs=47.4
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 108 GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 108 ~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+...+++..||||||||++||++|+.....+|+++||||||++||+..+..+.+.
T Consensus 325 ~~~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~ 379 (430)
T 1w1w_A 325 LKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY 379 (430)
T ss_dssp TCCCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH
T ss_pred CccccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHH
Confidence 3445567789999999999999998655578999999999999999999988765
No 104
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.32 E-value=1.2e-12 Score=119.44 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=44.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCC--CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHP--APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~--p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.++.+.+|||||+|||+||++|+ .+ |+++||||||++||+....++.+.
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~----~~~~~~llILDEPTagLdp~~~~~L~~~ 565 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIG----SGLVGVLYVLDEPSIGLHQRDNRRLIET 565 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHT----TCCCSCEEEEECTTTTCCHHHHHHHHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHHh----hCCCCcEEEEeCcccCCCHHHHHHHHHH
Confidence 68889999999999999999996 44 589999999999999999988765
No 105
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.31 E-value=1.3e-12 Score=118.98 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=44.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCC--CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHP--APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~--p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.++.+.+|||||+|||+||++|+ .+ |+++||||||++||+....++.+.
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~----~~~~~~llILDEPTagLdp~~~~~L~~~ 548 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIG----SRLTGVLYVLDEPSIGLHQRDNDRLIAT 548 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHT----TCCCSCEEEEECTTTTCCGGGHHHHHHH
T ss_pred cCCccccCCHHHHHHHHHHHHHh----hCCCCCEEEEeCcccCCCHHHHHHHHHH
Confidence 68899999999999999999996 44 599999999999999999988765
No 106
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.29 E-value=1.7e-12 Score=117.16 Aligned_cols=49 Identities=27% Similarity=0.207 Sum_probs=44.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCC--CEEEeecccCCCCHHHHHHHHhh
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPA--PFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p--~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.++++.+|||||+|||+||++|+ .+| .++||||||++||+.....+.++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~----~~p~~~llILDEPT~~Ld~~~~~~L~~~ 423 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLY----SNLFGVVYVLDEPSAGLHPADTEALLSA 423 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTT----TCCCSCEEEEECTTTTCCGGGHHHHHHH
T ss_pred ccCCcCcCCHHHHHHHHHHHHHh----hCCCCeEEEeeCccccCCHHHHHHHHHH
Confidence 68899999999999999999996 567 59999999999999999988764
No 107
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=9.9e-13 Score=110.58 Aligned_cols=120 Identities=10% Similarity=0.055 Sum_probs=64.4
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-ccccccCHHH---HH-Hhc--cccC
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-ATIRSLGLED---LR-SMA--LAQN 80 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~~i~~~~~~~---~~-~~~--~~q~ 80 (163)
++++.|+ +..+++|++|+ | +|+| +|||||||| ++.+.+...+ ....+..... .. ..+ ++|.
T Consensus 16 ~l~~~y~---~~~vl~~vsf~-I------~lvG-~sGaGKSTL-ln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 16 NLPNQVY---RKSVKRGFEFT-L------MVVG-ESGLGKSTL-INSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp CCCCCTT---TTTCC-CCCEE-E------EEEC-CTTSSHHHH-HHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred ecceeEC---CEEEecCCCEE-E------EEEC-CCCCcHHHH-HHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 5667785 36799999999 7 8999 999999999 5666666542 1111111110 00 111 2232
Q ss_pred CCcc----cc--cCCCCC------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC---EEEee
Q psy17517 81 QSAQ----AF--LGPENP------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP---FFVLD 145 (163)
Q Consensus 81 ~~~~----~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~---lllLD 145 (163)
+... +. .+.... ...+.+.+. ..++.+++||++|||++ +.+|+ ++++|
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal----~~d~~~~vlL~ld 146 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID-------------SKFEDYLNAESRVNRRQ----MPDNRVQCCLYFI 146 (418)
T ss_dssp ---CEEEEEEECC-----------CHHHHHHHH-------------HHHHHHTTTSCC-CCCC----CCCC-CCEEEEEC
T ss_pred CCcccceeeeechhhhhhccchhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHh----ccCCCeeEEEEEe
Confidence 2100 00 000000 001111110 14566778899999998 58899 99999
Q ss_pred ccc-CCCCHHHH
Q psy17517 146 EID-AALDNTNI 156 (163)
Q Consensus 146 EPt-s~LD~~~~ 156 (163)
||| ++||+...
T Consensus 147 ePt~~~L~~~d~ 158 (418)
T 2qag_C 147 APSGHGLKPLDI 158 (418)
T ss_dssp CC-CCSCCHHHH
T ss_pred cCcccCCCHHHH
Confidence 999 69998774
No 108
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.25 E-value=1.9e-12 Score=97.90 Aligned_cols=106 Identities=21% Similarity=0.101 Sum_probs=62.4
Q ss_pred CCcccCeee-EeeCCCCeEEeecCCCCChHHHHHHHHHhcccccc-----ccc-ccCHHHHHHhccccCCCcccccCCCC
Q psy17517 19 EPYLQGVNY-NCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIA-----TIR-SLGLEDLRSMALAQNQSAQAFLGPEN 91 (163)
Q Consensus 19 ~~~l~~vsl-~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~-----~i~-~~~~~~~~~~~~~q~~~~~~~~~~~~ 91 (163)
.+.|+.+.. . +++|++++|+| |||||||||++.++. ..-. +.. ..+...+.... +.. + .
T Consensus 6 ~~~LD~~l~Gg-i~~G~~~~i~G-~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~--~~~------~--~ 71 (220)
T 2cvh_A 6 TKSLDSLLGGG-FAPGVLTQVYG-PYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMA--ETR------G--L 71 (220)
T ss_dssp CHHHHHHTTSS-BCTTSEEEEEC-STTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHH--HTT------T--C
T ss_pred cHHHHHhhcCC-CcCCEEEEEEC-CCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHH--Hhc------C--C
Confidence 567777776 7 99999999999 999999999765544 1100 001 11222222110 000 0 0
Q ss_pred CchhHHHhchhcccCCCccCCCCCCCCHHH--HHHHHHHHHHHhcccC-CCCEEEeecccCCCCHH
Q psy17517 92 PEEPYLQGVNYNCVAPGKRFQPMTNLSGGE--KTVAALALLFAIHSYH-PAPFFVLDEIDAALDNT 154 (163)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq--kQrvaiAraL~~~~~~-~p~lllLDEPts~LD~~ 154 (163)
..+++.+.+. +..+++++ +|+++.+++++ . +|+++|+||||+.+|+.
T Consensus 72 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~----~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 72 NPEEALSRFI------------LFTPSDFKEQRRVIGSLKKTV----DSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp CHHHHHHHEE------------EECCTTTSHHHHHHHHHHHHC----CTTEEEEEEECCCCCTTGG
T ss_pred ChHHHhhcEE------------EEecCCHHHHHHHHHHHHHHh----hcCCCEEEEcCcHHHhhhc
Confidence 0112222222 22445554 56777777874 4 49999999999999974
No 109
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.25 E-value=2.8e-13 Score=108.84 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=34.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHH
Q psy17517 111 FQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNT 154 (163)
Q Consensus 111 ~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~ 154 (163)
..+...+||||+||+++|++.+ + +|+|+|+|||++++|+.
T Consensus 129 p~y~~~~sgGq~~R~~~a~~~~---~-~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 129 PKYDKSQFKGEGDRCPTGQKIK---L-PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CCEETTHHHHTCEECSSCEEEE---S-SCSEEEEEESSTTCCCC
T ss_pred ccCccccCCccccccccccceE---c-CCCEEEEeCccccCCcc
Confidence 4456889999999999986654 4 79999999999999985
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.24 E-value=2.1e-12 Score=106.49 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=37.3
Q ss_pred ccceeeCCCCCCCCcccCeee-------EeeCCCCeEEeecCCCCChHHHHHHHHHhcccc
Q psy17517 7 SAQAFLGPENPEEPYLQGVNY-------NCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~~vsl-------~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~ 60 (163)
....|+|... ..+.|+++.+ . +.+|++++++| |||||||||+ +++.++..
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~-~~~~g~i~I~G-ptGSGKTTlL-~~l~g~~~ 148 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVS-DVPRGLVLVTG-PTGSGKSTTL-AAMLDYLN 148 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHH-HCSSEEEEEEC-STTSCHHHHH-HHHHHHHH
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHH-hCCCCEEEEEC-CCCCCHHHHH-HHHHhccc
Confidence 3566677543 4578888887 7 78999999999 9999999994 54555443
No 111
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.23 E-value=4.8e-12 Score=108.62 Aligned_cols=47 Identities=34% Similarity=0.463 Sum_probs=42.3
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHhcccCCC--CEEEeecccCCCCHHHHHHHHhh
Q psy17517 112 QPMTNL-SGGEKTVAALALLFAIHSYHPA--PFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 112 ~~~~~L-SgGqkQrvaiAraL~~~~~~~p--~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+++..| ||||+|||+|||+|+ .+| +++||||||++||+.....+.+.
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~----~~~~~~~lilDEp~~gld~~~~~~i~~~ 441 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTV----LGADTPSVVFDEVDAGIGGAAAIAVAEQ 441 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHH----HCCCSSEEEECSCSSSCCTHHHHHHHHH
T ss_pred ccHHhcCCHHHHHHHHHHHHHH----hCCCCCEEEEeCCcCCCCHHHHHHHHHH
Confidence 456778 999999999999996 568 99999999999999999988765
No 112
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.23 E-value=4.6e-12 Score=96.36 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=23.1
Q ss_pred EeeCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 28 NCVAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 28 ~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
. +++||+++|+| |||||||||++. +.+
T Consensus 21 g-i~~G~~~~l~G-~nGsGKSTll~~-l~g 47 (231)
T 4a74_A 21 G-IETQAITEVFG-EFGSGKTQLAHT-LAV 47 (231)
T ss_dssp S-EESSEEEEEEE-STTSSHHHHHHH-HHH
T ss_pred C-CCCCcEEEEEC-CCCCCHHHHHHH-HHH
Confidence 5 89999999999 999999999544 444
No 113
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.22 E-value=4.8e-14 Score=105.24 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=51.8
Q ss_pred CeEEeecCCCCChHHHHHHHHHhcccccc------------cccccC---HHHHHH-hcc----ccCCCcccccCCCC--
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAIHRIA------------TIRSLG---LEDLRS-MAL----AQNQSAQAFLGPEN-- 91 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l~~~~------------~i~~~~---~~~~~~-~~~----~q~~~~~~~~~~~~-- 91 (163)
++++|+| +||||||||+ +++.+++.+. ++.+.+ .+.+|. ++. +..++..+|.....
T Consensus 3 ~~v~IvG-~SGsGKSTL~-~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~ 80 (171)
T 2f1r_A 3 LILSIVG-TSDSGKTTLI-TRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEE 80 (171)
T ss_dssp CEEEEEE-SCHHHHHHHH-HHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHH
T ss_pred eEEEEEC-CCCCCHHHHH-HHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChh
Confidence 5799999 9999999994 5555555431 222222 345663 444 44554444422100
Q ss_pred ---CchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCE
Q psy17517 92 ---PEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPF 141 (163)
Q Consensus 92 ---~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~l 141 (163)
...++++. .+ .+....-+..|||||+||++||||+. .+|++
T Consensus 81 ~~a~l~~~i~~-~l----~g~dt~i~EglSgGq~qri~lARall----~~p~i 124 (171)
T 2f1r_A 81 EGNDLDWIYER-YL----SDYDLVITEGFSKAGKDRIVVVKKPE----EVEHF 124 (171)
T ss_dssp HHTCHHHHHHH-HT----TTCSEEEEESCGGGCCCEEEECSSGG----GGGGG
T ss_pred hhhCHHHHHHh-hC----CCCCEEEECCcCCCCCcEEEEEeccc----CCCcc
Confidence 11112222 01 11111112349999999999999995 55655
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.22 E-value=9.7e-13 Score=106.34 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=60.4
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhccccc---------ccccccC----HHHH--HHhc--cccCCCcccccCCCCCch
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAIHRI---------ATIRSLG----LEDL--RSMA--LAQNQSAQAFLGPENPEE 94 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~---------~~i~~~~----~~~~--~~~~--~~q~~~~~~~~~~~~~~~ 94 (163)
+|++++++| ||||||||+ ++.+.++..+ .++.... ...+ +..+ ++|.+. .+.. ....
T Consensus 101 ~g~vi~lvG-~nGsGKTTl-l~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~--~~v~ 174 (304)
T 1rj9_A 101 KGRVVLVVG-VNGVGKTTT-IAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSA--ALAY 174 (304)
T ss_dssp SSSEEEEEC-STTSSHHHH-HHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHH--HHHH
T ss_pred CCeEEEEEC-CCCCcHHHH-HHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHH--HHHH
Confidence 799999999 999999999 5556666655 1222111 1222 2233 455432 1100 0000
Q ss_pred hH-----HHhchh-cccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCC--EEEeecccCCCCHHHH
Q psy17517 95 PY-----LQGVNY-NCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAP--FFVLDEIDAALDNTNI 156 (163)
Q Consensus 95 ~~-----~~~~~~-~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~--lllLDEPts~LD~~~~ 156 (163)
+. ...... .....+..+.....++..++||++|||+++ .+|+ ++.|| |+++.+....
T Consensus 175 ~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~----~~P~~~lLvLD-a~t~~~~~~~ 239 (304)
T 1rj9_A 175 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADP----EEPKEVWLVLD-AVTGQNGLEQ 239 (304)
T ss_dssp HHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCT----TCCSEEEEEEE-TTBCTHHHHH
T ss_pred HHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhc----CCCCeEEEEEc-HHHHHHHHHH
Confidence 00 011110 000112222222334566699999999995 7898 77788 6666665443
No 115
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.22 E-value=3.1e-13 Score=111.20 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=69.5
Q ss_pred ccCeeeEeeCC--CCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHH---------------Hhc--cccCCC
Q psy17517 22 LQGVNYNCVAP--GKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLR---------------SMA--LAQNQS 82 (163)
Q Consensus 22 l~~vsl~~i~~--Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~---------------~~~--~~q~~~ 82 (163)
.+.|+++ |.+ |+.++|+| ||||||||| ++++.+++.+..........+. ..+ ++|.+.
T Consensus 158 ~~~v~~~-v~~~lg~k~~IvG-~nGsGKSTL-lk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKE-ARPFFAKTVAILG-GESSGKSVL-VNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYI 234 (365)
T ss_dssp GGGSCTT-TGGGTCEEEEEEC-CTTSHHHHH-HHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHH
T ss_pred hhhCCHH-HHHhhhCeEEEEC-CCCCCHHHH-HHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHH
Confidence 5679998 999 99999999 999999999 6667777766332211111110 011 111110
Q ss_pred cccccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeec---cc------CCCCH
Q psy17517 83 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDE---ID------AALDN 153 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDE---Pt------s~LD~ 153 (163)
.+. ....+.+.+ ......+..+..+|+|++|+..+++++. ..+|++++||| |+ +++|+
T Consensus 235 --~~~------~t~~~nl~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~lllLdE~~~p~~~~g~~~sld~ 301 (365)
T 1lw7_A 235 --DYA------VRHSHKIAF--IDTDFITTQAFCIQYEGKAHPFLDSMIK---EYPFDVTILLKNNTEWVDDGLRSLGSQ 301 (365)
T ss_dssp --HHH------HHHCSSEEE--ESSCHHHHHHHHHHHHSCCCHHHHHHHH---HSCCSEEEEEECCCC-----------C
T ss_pred --HHH------HhccCCEEE--EeCCchHHHHHHHHHcCCCCHHHHHHHh---hcCCCEEEECCCCCCcccCCCcCCccH
Confidence 000 000000000 0011112233456777888888888764 25799999999 65 58999
Q ss_pred HHHHHHHhh
Q psy17517 154 TNIGKVASY 162 (163)
Q Consensus 154 ~~~~~i~~~ 162 (163)
..+..+.+.
T Consensus 302 ~~r~~l~~~ 310 (365)
T 1lw7_A 302 KQRQQFQQL 310 (365)
T ss_dssp CSHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 116
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.21 E-value=3.6e-12 Score=105.26 Aligned_cols=52 Identities=29% Similarity=0.301 Sum_probs=43.5
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHhc-----ccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 111 FQPMT-NLSGGEKTVAALALLFAIH-----SYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 111 ~~~~~-~LSgGqkQrvaiAraL~~~-----~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
+.++. .||||||||++||++|+.. ...+|+++|||||||+||+..+..+.+.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~ 316 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDL 316 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHH
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHH
Confidence 34566 7999999999999999620 0157999999999999999999998875
No 117
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.21 E-value=4.3e-12 Score=104.23 Aligned_cols=114 Identities=13% Similarity=0.078 Sum_probs=68.7
Q ss_pred CCcccCe-eeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc-cc------cc---ccccCHHHHHHhc--cccCCCccc
Q psy17517 19 EPYLQGV-NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH-RI------AT---IRSLGLEDLRSMA--LAQNQSAQA 85 (163)
Q Consensus 19 ~~~l~~v-sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~-~~------~~---i~~~~~~~~~~~~--~~q~~~~~~ 85 (163)
.+.|+.+ ++. +++|++++|+| |||||||||++.+..... +| .. +...... .+.++ ++|... +
T Consensus 117 ~~~LD~lL~gg-i~~G~i~~I~G-~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~--~ 191 (349)
T 1pzn_A 117 SKSLDKLLGGG-IETQAITEVFG-EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRG--L 191 (349)
T ss_dssp CHHHHHHHTSS-EESSEEEEEEE-STTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTT--C
T ss_pred CHHHHHHhcCC-CCCCeEEEEEC-CCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcC--C
Confidence 4567766 688 99999999999 999999999655443331 21 11 1111100 01112 233221 1
Q ss_pred ccCCCCCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhccc----CCCCEEEeecccCCCCHH
Q psy17517 86 FLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY----HPAPFFVLDEIDAALDNT 154 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~----~~p~lllLDEPts~LD~~ 154 (163)
....+.+.+.+. .. .-|.+++|++.++++++.. + .+|+++|+||||+.+|+.
T Consensus 192 ------~~~~v~~ni~~~----~~------~~~~~~~~~l~~~~~~~~~-lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 192 ------DPDEVLKHIYVA----RA------FNSNHQMLLVQQAEDKIKE-LLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp ------CHHHHGGGEEEE----EC------CSHHHHHHHHHHHHHHHHH-SSSSSSCEEEEEEETSSTTHHHH
T ss_pred ------CHHHHhhCEEEE----ec------CChHHHHHHHHHHHHHHHH-hccccCCCCEEEEeCchHhhhhh
Confidence 011233333221 00 1267899999999998632 2 589999999999999985
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.14 E-value=1e-11 Score=104.65 Aligned_cols=138 Identities=14% Similarity=0.009 Sum_probs=71.3
Q ss_pred eeeCCCCCCCCcccCeeeEeeCCCCe--EEeecCCCCChHHHHHHHHHhccccc-ccccccCHHHHHHhc--cccCCCcc
Q psy17517 10 AFLGPENPEEPYLQGVNYNCVAPGKR--FQPMTNLSGGEKTVAALALLFAIHRI-ATIRSLGLEDLRSMA--LAQNQSAQ 84 (163)
Q Consensus 10 ~f~y~~~~~~~~l~~vsl~~i~~Ge~--~~lvG~~nGsGKSTl~l~l~~~l~~~-~~i~~~~~~~~~~~~--~~q~~~~~ 84 (163)
++.|++ .+ +++|||+ +.+|++ ++|+| ||||||||| +++++++... .++........+..+ ++|.+...
T Consensus 22 ~~~y~~---~~-L~~vsl~-i~~Gei~~vaLvG-~nGaGKSTL-ln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 22 HVGFDS---LP-DQLVNKS-VSQGFCFNILCVG-ETGLGKSTL-MDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp CC-CC-----C-HHHHHHS-CC-CCEEEEEEEC-STTSSSHHH-HHHHHTSCC-------CCSSCEEEEEEEEEEC--CE
T ss_pred EEEECC---ee-cCCCceE-ecCCCeeEEEEEC-CCCCCHHHH-HHHHhCccccCCcCCCCCccceEeeEEEEeecCccc
Confidence 566743 45 9999999 999999 99999 999999999 5666666421 122111111112223 45543210
Q ss_pred --------cccCCCCCch---------------hHHHhc-hhcccCCCccCCC-----------CCCCCHHHHHHHHHHH
Q psy17517 85 --------AFLGPENPEE---------------PYLQGV-NYNCVAPGKRFQP-----------MTNLSGGEKTVAALAL 129 (163)
Q Consensus 85 --------~~~~~~~~~~---------------~~~~~~-~~~~~~~~~~~~~-----------~~~LSgGqkQrvaiAr 129 (163)
+.++...... .++... ++........+.. ...|+..+ +.|++
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk 171 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMK 171 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHH
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHH
Confidence 0012111100 011111 2110000111111 13466555 78999
Q ss_pred HHHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 130 LFAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 130 aL~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
+|. .+.+++++|||+..|.+.....+.+
T Consensus 172 ~L~----~~~~vI~Vi~KtD~Lt~~E~~~l~~ 199 (427)
T 2qag_B 172 KLD----SKVNIIPIIAKADAISKSELTKFKI 199 (427)
T ss_dssp HTC----SCSEEEEEESCGGGSCHHHHHHHHH
T ss_pred HHh----hCCCEEEEEcchhccchHHHHHHHH
Confidence 994 6789999999999999887665544
No 119
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.09 E-value=6.9e-12 Score=102.52 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=36.5
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~ 60 (163)
+.++.|. ...++++++++ +.+|++++|+| +|||||||| ++.+.++..
T Consensus 34 ~~~~~~~---~~~~l~~i~~~-~~~g~~v~i~G-~~GaGKSTL-l~~l~g~~~ 80 (337)
T 2qm8_A 34 RADHRAA---VRDLIDAVLPQ-TGRAIRVGITG-VPGVGKSTT-IDALGSLLT 80 (337)
T ss_dssp SHHHHHH---HHHHHHHHGGG-CCCSEEEEEEC-CTTSCHHHH-HHHHHHHHH
T ss_pred CcccccC---hHHHHHhCCcc-cCCCeEEEEEC-CCCCCHHHH-HHHHHHhhh
Confidence 3445553 24689999999 99999999999 999999999 455555443
No 120
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.09 E-value=6.4e-11 Score=97.65 Aligned_cols=47 Identities=32% Similarity=0.406 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHH------HHHHHHhcccCC-CCEEEeecccCCCCHHHHHHHHhh
Q psy17517 112 QPMTNLSGGEKTVAA------LALLFAIHSYHP-APFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 112 ~~~~~LSgGqkQrva------iAraL~~~~~~~-p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.++..|||||+||++ +|++++ .+ |+++||||||++||+..+..+.+.
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~----~~~~~~lllDEp~~~LD~~~~~~l~~~ 329 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALI----GNRVECIILDEPTVYLDENRRAKLAEI 329 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHH----SSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEeCCCCcCCHHHHHHHHHH
Confidence 345789999999985 566774 78 999999999999999999988764
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.08 E-value=1.4e-11 Score=91.58 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHh
Q psy17517 112 QPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVAS 161 (163)
Q Consensus 112 ~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~ 161 (163)
..+..+|+|++|+++++|++. ++|+++ +|+.....+.+
T Consensus 105 ~~~~~ls~~~~~~v~~~R~~~----r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 105 RPLHYIVLRTTAAEAIERCLD----RGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp SCEEEEEEECCHHHHHHHHHT----TCTTSC--------CCHHHHHHHHH
T ss_pred CCeEEEEecCCHHHHHHHHHh----cCCCcc--------CCHHHHHHHHH
Confidence 345679999999999999995 677765 57777666554
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.08 E-value=4.4e-12 Score=104.52 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=33.0
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+++++|+ +++|++++|+| ||||||||| ++++.++.++
T Consensus 165 ~~~l~~~-i~~G~~i~ivG-~sGsGKSTl-l~~l~~~~~~ 201 (361)
T 2gza_A 165 MSFLRRA-VQLERVIVVAG-ETGSGKTTL-MKALMQEIPF 201 (361)
T ss_dssp HHHHHHH-HHTTCCEEEEE-SSSSCHHHH-HHHHHTTSCT
T ss_pred HHHHHHH-HhcCCEEEEEC-CCCCCHHHH-HHHHHhcCCC
Confidence 3999999 99999999999 999999999 6667777765
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.08 E-value=9.4e-12 Score=96.71 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=33.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEee----cccCCCCHHHHHHHHhh
Q psy17517 110 RFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLD----EIDAALDNTNIGKVASY 162 (163)
Q Consensus 110 ~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLD----EPts~LD~~~~~~i~~~ 162 (163)
.++++..||| |+ +++. +.+|+++++| |||+++|+.++..+.+.
T Consensus 146 ~~r~~~~lSg----rv---~al~---~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~ 192 (246)
T 2bbw_A 146 SRRWIHPPSG----RV---YNLD---FNPPHVHGIDDVTGEPLVQQEDDKPEAVAAR 192 (246)
T ss_dssp HTEEEETTTT----EE---EETT---TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHH
T ss_pred HcCCCcCCCC----Cc---cccc---cCCCcccccccccccccccCCCCcHHHHHHH
Confidence 3556778888 55 5552 3789999999 99999999987776653
No 124
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.03 E-value=2.2e-11 Score=102.35 Aligned_cols=123 Identities=12% Similarity=0.050 Sum_probs=69.7
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhc--cccCCCcccc----cCCC----
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMA--LAQNQSAQAF----LGPE---- 90 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~--~~q~~~~~~~----~~~~---- 90 (163)
-.++++|+ ++.|+.++|+| +|||||||| ++.+.+..+. +.+.+...+...+ +.++....+. .+..
T Consensus 146 ~~~~i~le-lk~g~~VgLVG-~~gAGKSTL-L~~Lsg~~~~--i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~ 220 (416)
T 1udx_A 146 EKRRLRLE-LMLIADVGLVG-YPNAGKSSL-LAAMTRAHPK--IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 220 (416)
T ss_dssp CEEEEEEE-ECCSCSEEEEC-CGGGCHHHH-HHHHCSSCCE--ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGG
T ss_pred eEeeeeeE-EcCCCEEEEEC-CCCCcHHHH-HHHHHcCCcc--ccCcccceecceeeEEEecCcceEEEEeccccccchh
Confidence 35899999 99999999999 999999999 5556655321 1111111111111 2222101110 0110
Q ss_pred ---CCchhHHHh---chhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHH
Q psy17517 91 ---NPEEPYLQG---VNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNI 156 (163)
Q Consensus 91 ---~~~~~~~~~---~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~ 156 (163)
.....+++. +.....--+....++.+||+|++|++++|++|+ ..|.++++ +.+|....
T Consensus 221 ~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~----~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 221 EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALL----RRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp GSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHH----HSCEEEEE----ECCTTSCH
T ss_pred hhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhh----cCCEEEEE----ECCChhhH
Confidence 011111211 110000000004556789999999999999996 67999999 88998654
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.02 E-value=1.9e-10 Score=94.95 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=62.1
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc-c--cccc---ccCHH-HHHHhc--cccCCCcccc----
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR-I--ATIR---SLGLE-DLRSMA--LAQNQSAQAF---- 86 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~-~--~~i~---~~~~~-~~~~~~--~~q~~~~~~~---- 86 (163)
.-++++++. + +|++++++| ||||||||| ++++.++.. + ..+. +.... ..+..+ ++|.+ .++
T Consensus 204 ~gl~~L~~~-~-~G~~~~lvG-~sG~GKSTL-ln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~--~l~dtpg 277 (358)
T 2rcn_A 204 DGLKPLEEA-L-TGRISIFAG-QSGVGKSSL-LNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGG--DVIDSPG 277 (358)
T ss_dssp BTHHHHHHH-H-TTSEEEEEC-CTTSSHHHH-HHHHHCCSSCCCCC-------------CCCEEEECTTSC--EEEECHH
T ss_pred cCHHHHHHh-c-CCCEEEEEC-CCCccHHHH-HHHHhccccccccCCccccCCCCccceEEEEEEEECCCC--EecCccc
Confidence 357888875 4 799999999 999999999 666777665 5 3332 11111 111222 33332 222
Q ss_pred ---cCCCCC--------chhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy17517 87 ---LGPENP--------EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 132 (163)
Q Consensus 87 ---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~ 132 (163)
+..... ..++++.+++ ....++.+..|| ||+||++||+++.
T Consensus 278 v~e~~l~~l~~~e~~~~~~e~l~~~gl----~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 278 VREFGLWHLEPEQITQGFVEFHDYLGH----CKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HHTCCCCCCCHHHHHHTSGGGGGGTTC----SSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHcCC----chhcCCCcccCC-HHHHHHHHHhcCC
Confidence 111111 1224445555 677889999999 9999999999873
No 126
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.01 E-value=5.4e-13 Score=101.05 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=20.1
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
++|+.++|+| ||||||||| ++++.+++
T Consensus 2 ~~g~~i~lvG-psGaGKSTL-l~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSG-PSGAGKSTL-LKKLFQEH 28 (198)
T ss_dssp ---CCEEEEC-CTTSSHHHH-HHHHHHHH
T ss_pred CCCCEEEEEC-CCCCCHHHH-HHHHHhhC
Confidence 5799999999 999999999 55555554
No 127
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.01 E-value=2.6e-12 Score=112.46 Aligned_cols=26 Identities=8% Similarity=-0.091 Sum_probs=21.6
Q ss_pred CCCCEEEeecc------cCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEI------DAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEP------ts~LD~~~~~~i~~~ 162 (163)
+.|+++++||| |++||+..+.++.++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~l 176 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTL 176 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHH
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHH
Confidence 57999999999 999999998877654
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.98 E-value=7.8e-11 Score=86.64 Aligned_cols=46 Identities=7% Similarity=-0.239 Sum_probs=37.0
Q ss_pred cceeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
+.++.|. +..+++++||+ +++|++++++| ||||||||| ++++.++.
T Consensus 12 ~~~~~~g---~~~~l~~vsl~-i~~Ge~v~L~G-~nGaGKTTL-lr~l~g~l 57 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLH-TEKAIMVYLNG-DLGAGKTTL-TRGMLQGI 57 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHC-CSSCEEEEEEC-STTSSHHHH-HHHHHHHT
T ss_pred HHHHHHH---HHHHHhccccc-cCCCCEEEEEC-CCCCCHHHH-HHHHHHhC
Confidence 3445563 24699999999 99999999999 999999999 55556555
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.98 E-value=3.9e-10 Score=83.27 Aligned_cols=29 Identities=34% Similarity=0.314 Sum_probs=23.9
Q ss_pred eeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 26 NYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 26 sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+++ +.+|+.++++| |||+|||||+..+..
T Consensus 32 ~~~-~~~g~~~~l~G-~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 32 NFN-PEEGKGLTFVG-SPGVGKTHLAVATLK 60 (180)
T ss_dssp SCC-GGGCCEEEECC-SSSSSHHHHHHHHHH
T ss_pred hcc-ccCCCEEEEEC-CCCCCHHHHHHHHHH
Confidence 466 78899999999 999999999654433
No 130
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.94 E-value=7.9e-13 Score=105.12 Aligned_cols=126 Identities=10% Similarity=0.057 Sum_probs=73.2
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-------ccccccCHHHHHHhc--cccCCC----ccc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-------ATIRSLGLEDLRSMA--LAQNQS----AQA 85 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-------~~i~~~~~~~~~~~~--~~q~~~----~~~ 85 (163)
..++++++++ +++| ++++| |||||||||++. +.+...+ .++......+..+.+ +|+... ..+
T Consensus 33 ~~~l~~~~l~-~~~G--vlL~G-p~GtGKTtLaka-la~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 33 PDQFKALGLV-TPAG--VLLAG-PPGCGKTLLAKA-VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHHHTTCC-CCSE--EEEES-STTSCHHHHHHH-HHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHcCCC-CCCe--EEEEC-CCCCcHHHHHHH-HHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 3588999999 9999 99999 999999999544 5554433 122222222333333 555421 111
Q ss_pred cc-CCC----CCchhHHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccC-----------
Q psy17517 86 FL-GPE----NPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA----------- 149 (163)
Q Consensus 86 ~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts----------- 149 (163)
+. ..+ .+... ..+. .....++...+|||||+||+.+++|++ ++|+++ ||++.
T Consensus 108 ~~Deid~~~~~r~~~---~~~~---~~~~~~~~l~~Lsgg~~~~~~i~ia~t----n~p~~L--D~al~r~gRfd~~i~~ 175 (274)
T 2x8a_A 108 FFDEVDALCPRRSDR---ETGA---SVRVVNQLLTEMDGLEARQQVFIMAAT----NRPDII--DPAILRPGRLDKTLFV 175 (274)
T ss_dssp EEETCTTTCC---------------CTTHHHHHHHHHHTCCSTTCEEEEEEE----SCGGGS--CHHHHSTTSSCEEEEC
T ss_pred eeehhhhhhcccCCC---cchH---HHHHHHHHHHhhhcccccCCEEEEeec----CChhhC--CHhhcCcccCCeEEEe
Confidence 11 000 00000 0000 022334456789999999999999984 788864 98864
Q ss_pred -CCCHHHHHHHHh
Q psy17517 150 -ALDNTNIGKVAS 161 (163)
Q Consensus 150 -~LD~~~~~~i~~ 161 (163)
--|...+.+|++
T Consensus 176 ~~P~~~~r~~il~ 188 (274)
T 2x8a_A 176 GLPPPADRLAILK 188 (274)
T ss_dssp CSCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 336666766654
No 131
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.93 E-value=2.7e-10 Score=92.07 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=58.9
Q ss_pred CeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-ccc--cccCHHHHHHhccccCCCcccccCCCCCchhHHHhc
Q psy17517 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-ATI--RSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQGV 100 (163)
Q Consensus 24 ~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~~i--~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 100 (163)
.++++ ..+|++++++| +|||||||++.++...+... ..+ ...+. .|...+ .....+.+.+
T Consensus 96 ~~~~~-~~~~~vi~ivG-~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~--~r~~a~-------------eqL~~~~~~~ 158 (306)
T 1vma_A 96 KLNVP-PEPPFVIMVVG-VNGTGKTTSCGKLAKMFVDEGKSVVLAAADT--FRAAAI-------------EQLKIWGERV 158 (306)
T ss_dssp CCCCC-SSSCEEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECT--TCHHHH-------------HHHHHHHHHH
T ss_pred CCccc-CCCCeEEEEEc-CCCChHHHHHHHHHHHHHhcCCEEEEEcccc--ccHHHH-------------HHHHHHHHHc
Confidence 46777 88999999999 99999999965544333221 111 11110 000000 0011234444
Q ss_pred hhcccCCCccCCCCCCCCHHHHHHH---HHHHHHHhcccCCCCEEEeecccC
Q psy17517 101 NYNCVAPGKRFQPMTNLSGGEKTVA---ALALLFAIHSYHPAPFFVLDEIDA 149 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~LSgGqkQrv---aiAraL~~~~~~~p~lllLDEPts 149 (163)
++.. ...+|+|+.|++ ++++++. .+|+++|+|||..
T Consensus 159 gl~~---------~~~~s~~~~~~v~~~al~~a~~----~~~dvvIiDtpg~ 197 (306)
T 1vma_A 159 GATV---------ISHSEGADPAAVAFDAVAHALA----RNKDVVIIDTAGR 197 (306)
T ss_dssp TCEE---------ECCSTTCCHHHHHHHHHHHHHH----TTCSEEEEEECCC
T ss_pred CCcE---------EecCCccCHHHHHHHHHHHHHh----cCCCEEEEECCCc
Confidence 4411 235689999999 8888885 7899999999975
No 132
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.88 E-value=6.7e-10 Score=91.88 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=24.6
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+.+|++++++| ||||||||+ ++++.++..+
T Consensus 133 ~~~g~~i~ivG-~~GsGKTTl-l~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTG-PTGSGKSTT-IASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEEC-SSSSSHHHH-HHHHHHHHHH
T ss_pred hcCCCEEEEEC-CCCCCHHHH-HHHHHhhcCc
Confidence 78999999999 999999999 5555555543
No 133
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=1.1e-09 Score=82.44 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=20.7
Q ss_pred eeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 10 AFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 10 ~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+.+||.++...+++||||+ +.+|++++|+| ++||||||++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~G-~~GsGKsTl~~~La 46 (199)
T 3vaa_A 3 HHHHHSSGVDLGTENLYFQ-SNAMVRIFLTG-YMGAGKTTLGKAFA 46 (199)
T ss_dssp ----------------------CCCEEEEEC-CTTSCHHHHHHHHH
T ss_pred cccCCCCCCCCCCCceeEe-cCCCCEEEEEc-CCCCCHHHHHHHHH
Confidence 4578877788999999999 99999999999 99999999975554
No 134
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.82 E-value=1.4e-10 Score=99.21 Aligned_cols=37 Identities=14% Similarity=-0.039 Sum_probs=31.0
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
-+++||+ +.+|++++|+| +||||||||+ +.+.++..+
T Consensus 283 ~~~Isl~-i~~GeVI~LVG-pNGSGKTTLl-~~LAgll~~ 319 (503)
T 2yhs_A 283 DEPLNVE-GKAPFVILMVG-VNGVGKTTTI-GKLARQFEQ 319 (503)
T ss_dssp BCCCCCC-SCTTEEEEEEC-CTTSSHHHHH-HHHHHHHHH
T ss_pred CCCceee-ccCCeEEEEEC-CCcccHHHHH-HHHHHHhhh
Confidence 4689999 99999999999 9999999994 555565544
No 135
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.77 E-value=1.1e-08 Score=78.10 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=22.9
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+++|++++|+| |||||||||++.++.
T Consensus 21 i~~G~~~~i~G-~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFG-EFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEEC-CTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEC-CCCCcHHHHHHHHHH
Confidence 89999999999 999999999655544
No 136
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.76 E-value=3.8e-08 Score=78.89 Aligned_cols=109 Identities=14% Similarity=0.054 Sum_probs=61.7
Q ss_pred cCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc-cc--ccccCHHHHHHhccccCCCcccccCCCCCchhHHHh
Q psy17517 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI-AT--IRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQG 99 (163)
Q Consensus 23 ~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~-~~--i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 99 (163)
++++|+ +|++++++| +||+||||++.++...+... .. +.+.+.. +.....| + ..+.+.
T Consensus 91 ~~i~~~---~~~~i~i~g-~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~--~~~~~~q-----l--------~~~~~~ 151 (295)
T 1ls1_A 91 RLPVLK---DRNLWFLVG-LQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ--RPAAREQ-----L--------RLLGEK 151 (295)
T ss_dssp CCCCCC---SSEEEEEEC-CTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS--CHHHHHH-----H--------HHHHHH
T ss_pred ceeecC---CCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc--cHhHHHH-----H--------HHhccc
Confidence 677774 899999999 99999999965544333221 11 1111110 0000000 0 011223
Q ss_pred chhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecc-cCCCCHHHHHHHH
Q psy17517 100 VNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEI-DAALDNTNIGKVA 160 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP-ts~LD~~~~~~i~ 160 (163)
.++...+... .....+-+|.+++++.. .+++++|+||| ++++|.....++.
T Consensus 152 ~~l~~~~~~~------~~~p~~l~~~~l~~~~~----~~~D~viiDtpp~~~~d~~~~~~l~ 203 (295)
T 1ls1_A 152 VGVPVLEVMD------GESPESIRRRVEEKARL----EARDLILVDTAGRLQIDEPLMGELA 203 (295)
T ss_dssp HTCCEEECCT------TCCHHHHHHHHHHHHHH----HTCCEEEEECCCCSSCCHHHHHHHH
T ss_pred CCeEEEEcCC------CCCHHHHHHHHHHHHHh----CCCCEEEEeCCCCccccHHHHHHHH
Confidence 3331111000 12334557888888864 57999999999 9999987776654
No 137
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.74 E-value=2.6e-09 Score=81.95 Aligned_cols=38 Identities=18% Similarity=0.005 Sum_probs=20.5
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh-ccc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF-AIH 59 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~-~l~ 59 (163)
.+..+++||+ +++|++++|+| ||||||||++ +++. ++.
T Consensus 14 ~~~~~~~sl~-v~~G~ii~l~G-p~GsGKSTl~-~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSML-KSVGVILVLSS-PSGCGKTTVA-NKLLEKQK 52 (231)
T ss_dssp --------CC-EECCCEEEEEC-SCC----CHH-HHHHC---
T ss_pred hcccCCCCcc-cCCCCEEEEEC-CCCCCHHHHH-HHHHhcCC
Confidence 4678999999 99999999999 9999999994 5555 554
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.73 E-value=1.2e-08 Score=85.32 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=22.4
Q ss_pred EeeCCCCeEEeecCCCCChHHHHHHHH
Q psy17517 28 NCVAPGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 28 ~~i~~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
- |++|+++.|+| |||||||||++.+
T Consensus 174 G-I~~Gei~~I~G-~sGsGKTTLl~~l 198 (400)
T 3lda_A 174 G-VETGSITELFG-EFRTGKSQLCHTL 198 (400)
T ss_dssp S-EETTSEEEEEE-STTSSHHHHHHHH
T ss_pred C-cCCCcEEEEEc-CCCCChHHHHHHH
Confidence 5 89999999999 9999999997644
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.72 E-value=1.9e-09 Score=78.17 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=21.5
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
+|+.++++| |||||||||+ +++.+..
T Consensus 35 ~g~~~~l~G-~~G~GKTtL~-~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWG-EEGAGKSHLL-QAWVAQA 60 (149)
T ss_dssp CCSEEEEES-SSTTTTCHHH-HHHHHHH
T ss_pred CCCEEEEEC-CCCCCHHHHH-HHHHHHH
Confidence 899999999 9999999995 4455544
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.70 E-value=2.3e-10 Score=96.13 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=22.7
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhcccc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~ 60 (163)
..+|++++|+| |||||||||+.. +.++..
T Consensus 164 ~~~ggii~I~G-pnGSGKTTlL~a-llg~l~ 192 (418)
T 1p9r_A 164 KRPHGIILVTG-PTGSGKSTTLYA-GLQELN 192 (418)
T ss_dssp TSSSEEEEEEC-STTSCHHHHHHH-HHHHHC
T ss_pred HhcCCeEEEEC-CCCCCHHHHHHH-HHhhcC
Confidence 36899999999 999999999544 444443
No 141
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.70 E-value=6.2e-09 Score=88.88 Aligned_cols=39 Identities=8% Similarity=-0.095 Sum_probs=34.6
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
.++|+++||+ |++ |+++|+| ||||||||| ++++.++..|
T Consensus 17 ~~~l~~vsl~-i~~-e~~~liG-~nGsGKSTL-l~~l~Gl~~p 55 (483)
T 3euj_A 17 WNGFFARTFD-FDE-LVTTLSG-GNGAGKSTT-MAGFVTALIP 55 (483)
T ss_dssp ETTEEEEEEE-CCS-SEEEEEC-CTTSSHHHH-HHHHHHHHCC
T ss_pred cccccceEEE-Ecc-ceEEEEC-CCCCcHHHH-HHHHhcCCCC
Confidence 4689999999 999 9999999 999999999 6677777655
No 142
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.63 E-value=3.5e-09 Score=86.29 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=24.6
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
.++|++++++| ||||||||+ ++.+.++..+
T Consensus 126 ~~~g~vi~lvG-~nGaGKTTl-l~~Lag~l~~ 155 (328)
T 3e70_C 126 AEKPYVIMFVG-FNGSGKTTT-IAKLANWLKN 155 (328)
T ss_dssp SCSSEEEEEEC-CTTSSHHHH-HHHHHHHHHH
T ss_pred CCCCeEEEEEC-CCCCCHHHH-HHHHHHHHHh
Confidence 57899999999 999999999 4555666554
No 143
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.62 E-value=1.6e-08 Score=75.50 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=22.8
Q ss_pred eeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 26 NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 26 sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
|++ +.+|++++|+| ||||||||++ +++.++.
T Consensus 1 s~~-m~~g~ii~l~G-p~GsGKSTl~-~~L~~~~ 31 (205)
T 3tr0_A 1 SNA-MNKANLFIISA-PSGAGKTSLV-RALVKAL 31 (205)
T ss_dssp -----CCCCEEEEEC-CTTSCHHHHH-HHHHHHS
T ss_pred CCc-CCCCcEEEEEC-cCCCCHHHHH-HHHHhhC
Confidence 567 88999999999 9999999994 5555554
No 144
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=5.1e-08 Score=78.66 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+|+++|+|||++ ||+.....+.+.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~ 157 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRT 157 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHH
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHH
Confidence 6899999999999 999998887764
No 145
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.55 E-value=3.2e-10 Score=91.75 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCEEEeecc
Q psy17517 116 NLSGGEKTVAALALLFAIHSYHPAPFFVLDEI 147 (163)
Q Consensus 116 ~LSgGqkQrvaiAraL~~~~~~~p~lllLDEP 147 (163)
++|+||+||+..++++ +++|+++ |||
T Consensus 141 ~ls~g~~Q~~~ad~il----l~k~dl~--de~ 166 (318)
T 1nij_A 141 QFTIAQSQVGYADRIL----LTKTDVA--GEA 166 (318)
T ss_dssp HCHHHHHHHHTCSEEE----EECTTTC--SCT
T ss_pred hchHHHHHHHhCCEEE----EECcccC--CHH
Confidence 7999999999888877 4678876 888
No 146
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.54 E-value=5.8e-08 Score=74.14 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=30.9
Q ss_pred CCcccCe-eeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 19 EPYLQGV-NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 19 ~~~l~~v-sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+.|+.+ +-- +++|+++.|+| |||||||||++.++...
T Consensus 9 ~~~LD~~l~gG-l~~G~~~~i~G-~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 9 IPGVDEILHGG-IPERNVVLLSG-GPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CTTHHHHTTTS-EETTCEEEEEE-CTTSSHHHHHHHHHHHH
T ss_pred chhHHHHcCCC-CCCCcEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 5667776 667 99999999999 99999999976665444
No 147
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.53 E-value=6.4e-09 Score=81.75 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=31.1
Q ss_pred cc-eeeCCCCCCCCcccCeeeEeeCC---CCeEEeecCCCCChHHHHHHHH
Q psy17517 8 AQ-AFLGPENPEEPYLQGVNYNCVAP---GKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 8 ~~-~f~y~~~~~~~~l~~vsl~~i~~---Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
+. +|.|. ++.++|+++||+ |.+ |++++|+| ++||||||++..+
T Consensus 22 ~~~~~~~~--~~~~~l~~~~~~-i~~~l~g~~i~l~G-~~GsGKSTl~~~L 68 (250)
T 3nwj_A 22 SLLHSPFD--EEQQILKKKAEE-VKPYLNGRSMYLVG-MMGSGKTTVGKIM 68 (250)
T ss_dssp ------------CHHHHHHHHT-THHHHTTCCEEEEC-STTSCHHHHHHHH
T ss_pred ceeeEEec--Ccchhhhhhhhh-hhhhcCCCEEEEEC-CCCCCHHHHHHHH
Confidence 45 77883 246799999999 999 99999999 9999999996444
No 148
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.45 E-value=7.8e-09 Score=90.21 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 114 MTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 114 ~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
...+|+|++|++..++... .++.+||+||... |++.....+.+.
T Consensus 181 ~g~~~~g~~~~i~~g~~~~----a~~gvL~LDEi~~-l~~~~q~~Ll~~ 224 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHR----AHKGVLFIDEIAT-LSLKMQQSLLTA 224 (604)
T ss_dssp ---CCCCGGGGEECCHHHH----TTTSEEEETTGGG-SCHHHHHHHHHH
T ss_pred cCCccccccccccCceeee----cCCCEEEEechhh-CCHHHHHHHHHH
Confidence 3568999999988888775 6789999999998 798888777654
No 149
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.42 E-value=9.9e-08 Score=73.37 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=23.0
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhcccc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~ 60 (163)
.++|++++|+| ||||||||| ++++.++.+
T Consensus 13 ~~~G~ii~l~G-psGsGKSTL-lk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSA-PSGAGKSSL-IQALLKTQP 41 (219)
T ss_dssp --CCCEEEEEC-CTTSCHHHH-HHHHHHHSC
T ss_pred CCCCcEEEEEC-CCCCCHHHH-HHHHhccCC
Confidence 78999999999 999999999 555666654
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.42 E-value=3.5e-07 Score=77.15 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=70.9
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccc----cccc--cccCHHHHHHhcc---ccCCCcccccCC
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR----IATI--RSLGLEDLRSMAL---AQNQSAQAFLGP 89 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~----~~~i--~~~~~~~~~~~~~---~q~~~~~~~~~~ 89 (163)
.+.|+++..- +.+|+++.|.| ++|+|||||++.+...... +.-+ .+.+..++..++. +.-+...+..+
T Consensus 190 ~~~LD~~~gG-l~~G~liiI~G-~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g- 266 (454)
T 2r6a_A 190 FTELDRMTSG-FQRSDLIIVAA-RPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTG- 266 (454)
T ss_dssp CHHHHHHHSS-BCTTCEEEEEC-CTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTS-
T ss_pred cHHHHhhcCC-CCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcC-
Confidence 5689999988 99999999999 9999999997665543322 1101 1233444444331 11110111111
Q ss_pred CCCchh------HHHhchhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCH
Q psy17517 90 ENPEEP------YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153 (163)
Q Consensus 90 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~ 153 (163)
.-..++ .++.+.. ....-.....+|.++.+ +.+|.++.. ++|+++|+|+++.-.+.
T Consensus 267 ~l~~~~~~~~~~a~~~l~~----~~l~i~d~~~~s~~~i~--~~~~~l~~~--~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 267 KLTPEDWGKLTMAMGSLSN----AGIYIDDTPSIRVSDIR--AKCRRLKQE--SGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp CCCHHHHHHHHHHHHHHHS----SCEEEECCTTCCHHHHH--HHHHHHHTT--TCCCEEEEECGGGSCCS
T ss_pred CCCHHHHHHHHHHHHHHhc----CCEEEECCCCCCHHHHH--HHHHHHHHH--cCCCEEEEccHHHhccC
Confidence 011111 1222221 12222224578988876 667777532 67999999999998753
No 151
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.41 E-value=1.8e-07 Score=68.75 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=28.0
Q ss_pred Ccc--cCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 20 PYL--QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 20 ~~l--~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..+ ++++++ +.+| +++|+| ||||||||++.++.+
T Consensus 13 ~~~~~~~~~~~-~~~g-~~~i~G-~NGsGKStll~ai~~ 48 (182)
T 3kta_A 13 KSYGNKKVVIP-FSKG-FTAIVG-ANGSGKSNIGDAILF 48 (182)
T ss_dssp GGGCSSCEEEE-CCSS-EEEEEE-CTTSSHHHHHHHHHH
T ss_pred EeecCccEEEe-cCCC-cEEEEC-CCCCCHHHHHHHHHH
Confidence 355 789999 9998 999999 999999999544433
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.36 E-value=8.4e-07 Score=71.10 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=21.2
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.+|++++++| +||+||||++.++...
T Consensus 103 ~~g~vi~lvG-~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFG-STGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEE-STTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEC-CCCCCHHHHHHHHHHH
Confidence 5799999999 9999999996554433
No 153
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.35 E-value=4.5e-08 Score=78.66 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=32.0
Q ss_pred CcccCeeeEee-------------------CCCCeEEeecCCCCChHHHHHHHHHhcccc
Q psy17517 20 PYLQGVNYNCV-------------------APGKRFQPMTNLSGGEKTVAALALLFAIHR 60 (163)
Q Consensus 20 ~~l~~vsl~~i-------------------~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~ 60 (163)
++++++++. + .+|++++|+| |||||||||+ +++.++..
T Consensus 49 ~~~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~g~iigI~G-~~GsGKSTl~-~~L~~~l~ 105 (308)
T 1sq5_A 49 PLSRLLNFY-ISSNLRRQAVLEQFLGTNGQRIPYIISIAG-SVAVGKSTTA-RVLQALLS 105 (308)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHTCC-CCCCEEEEEEE-CTTSSHHHHH-HHHHHHHT
T ss_pred HHHHHHHHH-HhhhhhHHHHHHHHhccCCCCCCEEEEEEC-CCCCCHHHHH-HHHHHHHh
Confidence 588999998 8 9999999999 9999999994 55555543
No 154
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.34 E-value=3.9e-07 Score=67.56 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 124 VAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 124 rvaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.+.+|++++ .+|.++++| ||++|..+..++.+.
T Consensus 153 ~~~~a~~l~----~~~~~~~ld--~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 153 PTDEARAFA----EKNGLSFIE--TSALDSTNVEAAFQT 185 (191)
T ss_dssp CHHHHHHHH----HHTTCEEEE--CCTTTCTTHHHHHHH
T ss_pred CHHHHHHHH----HHcCCEEEE--EeCCCCCCHHHHHHH
Confidence 467899997 468999999 999999999988764
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.34 E-value=1.7e-06 Score=70.86 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=23.9
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+++|+++.|.| |+|||||||++.++...
T Consensus 58 l~~G~iv~I~G-~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 58 LPRGRVIEIYG-PESSGKTTVALHAVANA 85 (349)
T ss_dssp EETTSEEEEEE-STTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 78999999999 99999999976665443
No 156
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.33 E-value=1.3e-07 Score=71.36 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=23.6
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhcccc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~ 60 (163)
.++|++++|+| |||||||||+ +++.++..
T Consensus 19 ~~~g~~v~I~G-~sGsGKSTl~-~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSG-APGSGKSTLS-NPLAAALS 47 (208)
T ss_dssp CCSCEEEEEEC-CTTSCTHHHH-HHHHHHHH
T ss_pred CCCCeEEEEEC-CCCCCHHHHH-HHHHHHHh
Confidence 46899999999 9999999994 55555554
No 157
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.31 E-value=3e-07 Score=68.47 Aligned_cols=30 Identities=17% Similarity=0.011 Sum_probs=22.5
Q ss_pred eEeeCCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 27 YNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 27 l~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
++ +.+|++++|+| ||||||||++. ++.+..
T Consensus 1 m~-i~~g~~i~l~G-~~GsGKSTl~~-~L~~~~ 30 (207)
T 2j41_A 1 MD-NEKGLLIVLSG-PSGVGKGTVRK-RIFEDP 30 (207)
T ss_dssp ----CCCCEEEEEC-STTSCHHHHHH-HHHHCT
T ss_pred CC-CCCCCEEEEEC-CCCCCHHHHHH-HHHHhh
Confidence 35 88999999999 99999999954 444444
No 158
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.30 E-value=1.1e-07 Score=77.77 Aligned_cols=107 Identities=10% Similarity=0.025 Sum_probs=66.5
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHH
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYL 97 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 97 (163)
+.+.|+.+.-- +.+|+++.|.| ++|+|||||++.+...... .....+|+..+...+.+.
T Consensus 32 G~~~LD~~~gG-l~~G~LiiIaG-~pG~GKTt~al~ia~~~a~-------------------~g~~Vl~fSlEms~~ql~ 90 (338)
T 4a1f_A 32 GFVQLDNYTSG-FNKGSLVIIGA-RPSMGKTSLMMNMVLSALN-------------------DDRGVAVFSLEMSAEQLA 90 (338)
T ss_dssp SCHHHHHHHCS-BCTTCEEEEEE-CTTSCHHHHHHHHHHHHHH-------------------TTCEEEEEESSSCHHHHH
T ss_pred CChHHHHHhcC-CCCCcEEEEEe-CCCCCHHHHHHHHHHHHHH-------------------cCCeEEEEeCCCCHHHHH
Confidence 35678888777 99999999999 9999999997665433221 011122333333333322
Q ss_pred Hhchhc--ccC-CCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCC
Q psy17517 98 QGVNYN--CVA-PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152 (163)
Q Consensus 98 ~~~~~~--~~~-~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD 152 (163)
.++--. ... ..... ..||.++.+|++.|...+ .++++++.|+|...++
T Consensus 91 ~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l----~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 91 LRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHL----SQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHH----HHSCEEEECCTTCCHH
T ss_pred HHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHH----hcCCeEEeCCCCCcHH
Confidence 222100 000 11111 379999999999998875 4589999999876554
No 159
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.27 E-value=1.7e-07 Score=70.30 Aligned_cols=37 Identities=22% Similarity=0.036 Sum_probs=31.5
Q ss_pred CCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 18 EEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 18 ~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
...+.+.+++. .++|++++|+| ||||||||++..+..
T Consensus 11 ~~~~~~~~~~~-~~~g~~i~l~G-~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 11 SVEKVDRQRLL-DQKGCVIWVTG-LSGSGKSTLACALNQ 47 (200)
T ss_dssp CCCHHHHHHHH-TSCCEEEEEEC-STTSSHHHHHHHHHH
T ss_pred ccCHHHHHHhc-CCCCeEEEEEC-CCCCCHHHHHHHHHH
Confidence 46788889998 99999999999 999999999655443
No 160
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.24 E-value=4.3e-07 Score=67.36 Aligned_cols=26 Identities=27% Similarity=0.179 Sum_probs=20.8
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhcccc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFAIHR 60 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~l~~ 60 (163)
|++++|+| ||||||||+ ++++.++.+
T Consensus 1 ~~ii~l~G-psGaGKsTl-~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISG-PSGTGKSTL-LKKLFAEYP 26 (186)
T ss_dssp CCCEEEES-SSSSSHHHH-HHHHHHHCG
T ss_pred CCEEEEEC-CCCCCHHHH-HHHHHhhCC
Confidence 67899999 999999999 455555544
No 161
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.20 E-value=6.9e-07 Score=65.98 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=21.3
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
.+|++++|+| |||||||||+.. +.+..
T Consensus 3 ~~g~~i~i~G-psGsGKSTL~~~-L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLG-AHGVGRRHIKNT-LITKH 29 (180)
T ss_dssp CCCCEEEEEC-CTTSSHHHHHHH-HHHHC
T ss_pred CCCCEEEEEC-CCCCCHHHHHHH-HHhhC
Confidence 3689999999 999999999544 44433
No 162
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.20 E-value=2.1e-07 Score=79.92 Aligned_cols=39 Identities=10% Similarity=-0.053 Sum_probs=33.0
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
.+++++++. +++|+.++++| ||||||||+ ++++.++.++
T Consensus 248 ~~l~~l~~~-v~~g~~i~I~G-ptGSGKTTl-L~aL~~~i~~ 286 (511)
T 2oap_1 248 GVLAYLWLA-IEHKFSAIVVG-ETASGKTTT-LNAIMMFIPP 286 (511)
T ss_dssp HHHHHHHHH-HHTTCCEEEEE-STTSSHHHH-HHHHGGGSCT
T ss_pred HHHHHHHHH-HhCCCEEEEEC-CCCCCHHHH-HHHHHhhCCC
Confidence 467889998 99999999999 999999999 4556666655
No 163
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.19 E-value=1.8e-06 Score=73.61 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=50.1
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHHHhc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQGV 100 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 100 (163)
.++++++. ++.| +.|+| |+|+||||+++.+......+ ++..+.. ++.+
T Consensus 40 ~~~~~g~~-~p~g--vLL~G-ppGtGKT~Laraia~~~~~~--------------f~~is~~------------~~~~-- 87 (476)
T 2ce7_A 40 KFNRIGAR-MPKG--ILLVG-PPGTGKTLLARAVAGEANVP--------------FFHISGS------------DFVE-- 87 (476)
T ss_dssp HHHTTTCC-CCSE--EEEEC-CTTSSHHHHHHHHHHHHTCC--------------EEEEEGG------------GTTT--
T ss_pred HHhhcCCC-CCCe--EEEEC-CCCCCHHHHHHHHHHHcCCC--------------eeeCCHH------------HHHH--
Confidence 56677777 7777 77999 99999999965543311100 0000000 0000
Q ss_pred hhcccCCCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccC
Q psy17517 101 NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA 149 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts 149 (163)
. . .-.+++++|..+++|.. ..|.++++||+.+
T Consensus 88 -~----------~--~g~~~~~~r~lf~~A~~----~~p~ILfIDEid~ 119 (476)
T 2ce7_A 88 -L----------F--VGVGAARVRDLFAQAKA----HAPCIVFIDEIDA 119 (476)
T ss_dssp -C----------C--TTHHHHHHHHHHHHHHH----TCSEEEEEETGGG
T ss_pred -H----------H--hcccHHHHHHHHHHHHh----cCCCEEEEechhh
Confidence 0 0 01267888889999885 6799999999965
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.18 E-value=5.3e-07 Score=67.01 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHHHHHhcccCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 125 AALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 125 vaiAraL~~~~~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
...|++++ ++|.+.++| ||++|..+..++.+.
T Consensus 130 ~~~a~~l~----~~~~~~~~d--~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 130 TDEARAFA----EKNNLSFIE--TSALDSTNVEEAFKN 161 (199)
T ss_dssp HHHHHHHH----HHTTCEEEE--CCTTTCTTHHHHHHH
T ss_pred HHHHHHHH----HHcCCeEEE--EeCCCCCCHHHHHHH
Confidence 35588886 468999999 999999999888764
No 165
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.14 E-value=1.1e-06 Score=72.27 Aligned_cols=32 Identities=22% Similarity=0.010 Sum_probs=28.1
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 53 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~ 53 (163)
...+++++++ +.+| +++++| ||||||||++..
T Consensus 14 ~~~~~~~~~~-~~~g-~~~i~G-~nG~GKttll~a 45 (359)
T 2o5v_A 14 YRNLAPGTLN-FPEG-VTGIYG-ENGAGKTNLLEA 45 (359)
T ss_dssp BTTCCSEEEE-CCSE-EEEEEC-CTTSSHHHHHHH
T ss_pred ccceeeeEEE-EcCC-eEEEEC-CCCCChhHHHHH
Confidence 4567899999 9999 999999 999999999533
No 166
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.10 E-value=7.1e-07 Score=73.96 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=30.8
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+++++++. +++|++++++| |||||||||+.. +.+.
T Consensus 157 ~~l~~~~~~-i~~~~~i~l~G-~~GsGKSTl~~~-l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYN-IPKKRYWLFKG-PIDSGKTTLAAA-LLEL 192 (377)
T ss_dssp HHHHHHHHC-CTTCCEEEEEC-STTSSHHHHHHH-HHHH
T ss_pred HHHHhcccc-cCCCCEEEEEC-CCCCCHHHHHHH-HHhh
Confidence 578899999 99999999999 999999999544 4443
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.08 E-value=1.7e-06 Score=64.80 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=19.7
Q ss_pred eeEeeCCCCeEEeecCCCCChHHHHHHHH
Q psy17517 26 NYNCVAPGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 26 sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
.++ ..+|++++|+| ||||||||++..+
T Consensus 23 ~m~-~~~g~~i~l~G-~~GsGKSTl~~~L 49 (200)
T 4eun_A 23 MMT-GEPTRHVVVMG-VSGSGKTTIAHGV 49 (200)
T ss_dssp ------CCCEEEEEC-CTTSCHHHHHHHH
T ss_pred hhc-CCCCcEEEEEC-CCCCCHHHHHHHH
Confidence 466 78999999999 9999999996444
No 168
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.06 E-value=2.1e-06 Score=64.82 Aligned_cols=26 Identities=19% Similarity=0.001 Sum_probs=21.4
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
++|++++|+| ||||||||++..+...
T Consensus 6 ~~g~~i~l~G-psGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSG-PSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEEC-CTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEEC-cCCCCHHHHHHHHHhh
Confidence 5899999999 9999999995444433
No 169
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.06 E-value=4.6e-07 Score=72.99 Aligned_cols=107 Identities=8% Similarity=0.026 Sum_probs=60.5
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcccccccccccCHHHHHHhccccCCCcccccCCCCCchhHHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQ 98 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 98 (163)
.+.|+.+.-- +.+|+++.|.| ++|+|||||++.+...... +. ...+|+..+...+.+..
T Consensus 55 ~~~LD~~lgG-l~~G~l~li~G-~pG~GKTtl~l~ia~~~a~------------------~g-~~vl~~slE~s~~~l~~ 113 (315)
T 3bh0_A 55 FTELDRMTYG-YKRRNFVLIAA-RPSMGKTAFALKQAKNMSD------------------ND-DVVNLHSLEMGKKENIK 113 (315)
T ss_dssp CHHHHHHHSS-BCTTCEEEEEC-CTTSSHHHHHHHHHHHHHT------------------TT-CEEEEEESSSCHHHHHH
T ss_pred hHHHHhhcCC-CCCCcEEEEEe-CCCCCHHHHHHHHHHHHHH------------------cC-CeEEEEECCCCHHHHHH
Confidence 5678888877 99999999999 9999999997665433211 00 12233333333333222
Q ss_pred hchhc--ccC-CCccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccCCC
Q psy17517 99 GVNYN--CVA-PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAAL 151 (163)
Q Consensus 99 ~~~~~--~~~-~~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts~L 151 (163)
++.-. ... ....... ..||+++.+|++.|...+ .++++++.|+|...+
T Consensus 114 R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l----~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 114 RLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEI----SNSNINIFDKAGQSV 164 (315)
T ss_dssp HHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHH----HTSCEEEECCSCCBH
T ss_pred HHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHH----hCCCEEEECCCCCCH
Confidence 22100 000 0111110 127778888887777664 356788888776443
No 170
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.02 E-value=7.5e-07 Score=79.91 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=36.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEeecccC-CCCHHHHHH
Q psy17517 111 FQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDA-ALDNTNIGK 158 (163)
Q Consensus 111 ~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLDEPts-~LD~~~~~~ 158 (163)
+..+.-+|+|+.+|..+++.+ +.+++++|+|||.. +||......
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~----l~~~~~lIlDEah~R~ld~d~~~~ 229 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHD----LSRYSCIILDEAHERTLATDILMG 229 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTT----CTTEEEEEECSGGGCCHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHhhCcc----ccCCCEEEecCccccccchHHHHH
Confidence 445677899999999999876 58899999999996 899665443
No 171
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.01 E-value=1.6e-06 Score=69.42 Aligned_cols=32 Identities=22% Similarity=0.097 Sum_probs=27.8
Q ss_pred eEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 27 YNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 27 l~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
|+ +..|++++++| ||||||||| ++++.++..|
T Consensus 164 f~-~l~geiv~l~G-~sG~GKSTl-l~~l~g~~~~ 195 (301)
T 1u0l_A 164 KE-YLKGKISTMAG-LSGVGKSSL-LNAINPGLKL 195 (301)
T ss_dssp HH-HHSSSEEEEEC-STTSSHHHH-HHHHSTTCCC
T ss_pred HH-HhcCCeEEEEC-CCCCcHHHH-HHHhcccccc
Confidence 55 77899999999 999999999 6778887766
No 172
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.98 E-value=1.3e-06 Score=70.43 Aligned_cols=32 Identities=16% Similarity=-0.067 Sum_probs=25.2
Q ss_pred eEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 27 YNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 27 l~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
++ +.+|++++++| |||+||||| ++.+.++..+
T Consensus 168 ~~-~~~G~~~~lvG-~sG~GKSTL-ln~L~g~~~~ 199 (307)
T 1t9h_A 168 IP-HFQDKTTVFAG-QSGVGKSSL-LNAISPELGL 199 (307)
T ss_dssp GG-GGTTSEEEEEE-SHHHHHHHH-HHHHCC----
T ss_pred Hh-hcCCCEEEEEC-CCCCCHHHH-HHHhcccccc
Confidence 77 88999999999 999999999 6667776654
No 173
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.98 E-value=3e-06 Score=65.95 Aligned_cols=36 Identities=14% Similarity=-0.091 Sum_probs=24.4
Q ss_pred cCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh---ccccc
Q psy17517 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF---AIHRI 61 (163)
Q Consensus 23 ~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~---~l~~~ 61 (163)
..++.- ..+|++++|+| ||||||||++ +++. ++..+
T Consensus 18 ~~~~~m-~~~g~~I~I~G-~~GsGKSTl~-k~La~~Lg~~~~ 56 (252)
T 4e22_A 18 LERPHM-TAIAPVITVDG-PSGAGKGTLC-KALAESLNWRLL 56 (252)
T ss_dssp -----C-TTTSCEEEEEC-CTTSSHHHHH-HHHHHHTTCEEE
T ss_pred hhhhhc-CCCCcEEEEEC-CCCCCHHHHH-HHHHHhcCCCcC
Confidence 344444 57899999999 9999999995 4455 55544
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.98 E-value=3.5e-06 Score=68.80 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=35.8
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEee-cccCCCCHHHHHHHHh
Q psy17517 108 GKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLD-EIDAALDNTNIGKVAS 161 (163)
Q Consensus 108 ~~~~~~~~~LSgGqkQrvaiAraL~~~~~~~p~lllLD-EPts~LD~~~~~~i~~ 161 (163)
+..+..+..+|++++|++. +.+. ..++-++++| ++.+++|.....++.+
T Consensus 223 G~~~~~~~~~~~~~~~~~~-~~~~----~ad~illV~D~s~~~~~~~~~~~~~~~ 272 (357)
T 2e87_A 223 GLLDRPISERNEIEKQAIL-ALRY----LGNLIIYIFDPSEHCGFPLEEQIHLFE 272 (357)
T ss_dssp TTSSSCSTTSCHHHHHHHH-GGGG----TCSEEEEEECTTCTTSSCHHHHHHHHH
T ss_pred CccccchhhhhHHHHHHHH-HHHh----cCCEEEEEEeCCccccCCHHHHHHHHH
Confidence 4444566789999998775 3332 2567788999 9999999888766654
No 175
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.95 E-value=2.9e-06 Score=62.59 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=18.1
Q ss_pred CCeEEeecCCCCChHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
|++++++| ||||||||++..+
T Consensus 2 g~ii~l~G-~~GaGKSTl~~~L 22 (189)
T 2bdt_A 2 KKLYIITG-PAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEEEC-STTSSHHHHHHHH
T ss_pred CeEEEEEC-CCCCcHHHHHHHH
Confidence 68899999 9999999995444
No 176
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.94 E-value=4.1e-06 Score=69.88 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=37.0
Q ss_pred ccceeeCCCCCCCCccc--------------CeeeEeeCCCCeEEeecCCCCChHHHHHH
Q psy17517 7 SAQAFLGPENPEEPYLQ--------------GVNYNCVAPGKRFQPMTNLSGGEKTVAAL 52 (163)
Q Consensus 7 ~~~~f~y~~~~~~~~l~--------------~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l 52 (163)
.++.|.||. .+..++ |+.+. +.+|+.++|+| |+|+|||||+.
T Consensus 137 e~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~p-i~rGQr~~IvG-~sG~GKTtLl~ 192 (422)
T 3ice_A 137 ENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASP-IGRGQRGLIVA-PPKAGKTMLLQ 192 (422)
T ss_dssp TTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSC-CBTTCEEEEEC-CSSSSHHHHHH
T ss_pred ccccccCCC--CccccccCCCCcccccceeeeeeee-ecCCcEEEEec-CCCCChhHHHH
Confidence 367889996 367888 89999 99999999999 99999999953
No 177
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.93 E-value=5.1e-07 Score=69.92 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=25.9
Q ss_pred eeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 26 NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 26 sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
+++ +.+ ++++|+| ||||||||| +.++.++..|
T Consensus 22 ~~~-~~~-~~~~i~G-pnGsGKSTl-l~~i~g~~~~ 53 (227)
T 1qhl_A 22 TFD-LDE-LVTTLSG-GNGAGKSTT-MAAFVTALIP 53 (227)
T ss_dssp EEC-HHH-HHHHHHS-CCSHHHHHH-HHHHHHHHSC
T ss_pred EEE-EcC-cEEEEEC-CCCCCHHHH-HHHHhccccc
Confidence 566 666 8999999 999999999 5666666655
No 178
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.92 E-value=7.1e-06 Score=59.11 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=25.4
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+++.+++ +.+| +++|+| ||||||||++-++...+
T Consensus 14 ~~~~~i~-f~~g-~~~I~G-~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVE-FKEG-INLIIG-QNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEE-CCSE-EEEEEC-CTTSSHHHHHHHHHHHH
T ss_pred CcceEEE-cCCC-eEEEEC-CCCCCHHHHHHHHHHHH
Confidence 4566777 7654 889999 99999999965544444
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.92 E-value=4.1e-06 Score=67.84 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=29.0
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+++++|+ +.+|++++++| +||+||||++.++...+
T Consensus 95 ~~~l~~~-~~~~~vI~ivG-~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 95 KYRIDFK-ENRLNIFMLVG-VNGTGKTTSLAKMANYY 129 (320)
T ss_dssp -CCCCCC-TTSCEEEEEES-STTSSHHHHHHHHHHHH
T ss_pred ccCcccc-CCCCeEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 4789999 99999999999 99999999965554443
No 180
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.90 E-value=2.5e-06 Score=65.91 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=27.9
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++++++ +++| +.++| |||||||||+..+..
T Consensus 39 ~~~~~~~~~-~~~g--~ll~G-~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 39 SRFHEMGAR-IPKG--VLLVG-PPGVGKTHLARAVAG 71 (254)
T ss_dssp HHHHHTTCC-CCSE--EEEEC-CTTSSHHHHHHHHHH
T ss_pred HHHHHcCCC-CCCe--EEEEC-CCCCCHHHHHHHHHH
Confidence 578899999 9999 88999 999999999654433
No 181
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.89 E-value=6.1e-06 Score=62.53 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=21.6
Q ss_pred eeEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 26 NYNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 26 sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
|+. ..+|++++|+| |||||||||+..++
T Consensus 13 ~~~-~~~g~~ivl~G-PSGaGKsTL~~~L~ 40 (197)
T 3ney_A 13 NLY-FQGRKTLVLIG-ASGVGRSHIKNALL 40 (197)
T ss_dssp ----CCSCCEEEEEC-CTTSSHHHHHHHHH
T ss_pred cCC-CCCCCEEEEEC-cCCCCHHHHHHHHH
Confidence 465 67899999999 99999999955444
No 182
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.87 E-value=6.1e-06 Score=60.01 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.8
Q ss_pred CCCCeEEeecCCCCChHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
.+|++++|+| +|||||||++..+
T Consensus 6 ~~g~~i~l~G-~~GsGKSTl~~~l 28 (175)
T 1knq_A 6 HDHHIYVLMG-VSGSGKSAVASEV 28 (175)
T ss_dssp TTSEEEEEEC-STTSCHHHHHHHH
T ss_pred CCCcEEEEEc-CCCCCHHHHHHHH
Confidence 5789999999 9999999996443
No 183
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.87 E-value=3.8e-06 Score=64.35 Aligned_cols=32 Identities=13% Similarity=-0.174 Sum_probs=25.5
Q ss_pred CeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 24 ~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+-+.+ ..+|++++|.| +|||||||+ .+++.+.
T Consensus 12 ~~~~~-~~~g~~i~i~G-~~GsGKSTl-~~~L~~~ 43 (230)
T 2vp4_A 12 TKYAE-GTQPFTVLIEG-NIGSGKTTY-LNHFEKY 43 (230)
T ss_dssp CCBTT-TCCCEEEEEEC-STTSCHHHH-HHTTGGG
T ss_pred CccCC-CCCceEEEEEC-CCCCCHHHH-HHHHHhc
Confidence 34456 78999999999 999999999 4555554
No 184
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.87 E-value=3.1e-06 Score=66.46 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=27.4
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++++++ +++| +.|+| |||||||||+..+..
T Consensus 63 ~~l~~~~~~-~~~g--vll~G-p~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 63 SRFHEMGAR-IPKG--VLLVG-PPGVGKTHLARAVAG 95 (278)
T ss_dssp HHHHHTTCC-CCCE--EEEEC-CTTSSHHHHHHHHHH
T ss_pred HHHHHcCCC-CCCe--EEEEC-CCcChHHHHHHHHHH
Confidence 467888998 9999 88999 999999999654433
No 185
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.82 E-value=6.5e-06 Score=65.91 Aligned_cols=31 Identities=19% Similarity=0.019 Sum_probs=25.0
Q ss_pred eEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 27 YNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 27 l~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
++ +..|++++++| ||||||||| ++++. +..+
T Consensus 160 ~~-~l~G~i~~l~G-~sG~GKSTL-ln~l~-~~~~ 190 (302)
T 2yv5_A 160 VD-YLEGFICILAG-PSGVGKSSI-LSRLT-GEEL 190 (302)
T ss_dssp HH-HTTTCEEEEEC-STTSSHHHH-HHHHH-SCCC
T ss_pred Hh-hccCcEEEEEC-CCCCCHHHH-HHHHH-HhhC
Confidence 45 77899999999 999999999 55555 5554
No 186
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.81 E-value=2.2e-05 Score=64.61 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=31.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcc-cCCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 112 QPMTNLSGGEKTVAALALLFAIHS-YHPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 112 ~~~~~LSgGqkQrvaiAraL~~~~-~~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
.++..+|++++|++.++..++..- ..+|++ +|+|++|..+..++.+.
T Consensus 300 NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~ 347 (364)
T 2qtf_A 300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDK 347 (364)
T ss_dssp ECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHH
T ss_pred ECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHH
Confidence 445667888889888874443210 122343 89999999998887764
No 187
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.80 E-value=1.2e-05 Score=67.17 Aligned_cols=33 Identities=6% Similarity=0.007 Sum_probs=25.8
Q ss_pred eeEeeCCCCeEEeecCCCCChHHHHHHHHHhccccc
Q psy17517 26 NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61 (163)
Q Consensus 26 sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~~~ 61 (163)
.++ +.+|++++|+| ||||||||++ ..+.++..+
T Consensus 20 ~~~-~~~~~~~~i~G-~nG~GKstll-~ai~~~~~~ 52 (430)
T 1w1w_A 20 KVG-FGESNFTSIIG-PNGSGKSNMM-DAISFVLGV 52 (430)
T ss_dssp EEE-CTTCSEEEEEC-STTSSHHHHH-HHHHHHTTC
T ss_pred eEE-ecCCCEEEEEC-CCCCCHHHHH-HHHHhhhcc
Confidence 377 88899999999 9999999994 445554433
No 188
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.79 E-value=1.1e-05 Score=60.44 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=24.2
Q ss_pred cCeeeEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 23 ~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++--+ +.+|++++|+| ++||||||++..+.
T Consensus 12 ~~~~~~-~~~~~~i~i~G-~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 12 SGLVPR-GSKTFIIGISG-VTNSGKTTLAKNLQ 42 (207)
T ss_dssp --CCCC-SCCCEEEEEEE-STTSSHHHHHHHHH
T ss_pred cccccc-CCCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 445556 89999999999 99999999964443
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.77 E-value=1.1e-05 Score=60.43 Aligned_cols=25 Identities=28% Similarity=0.008 Sum_probs=21.3
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..+|++++|+| +|||||||++..+.
T Consensus 19 ~~~~~~i~i~G-~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 19 TAGRLVLGIDG-LSRSGKTTLANQLS 43 (201)
T ss_dssp CSSSEEEEEEE-CTTSSHHHHHHHHH
T ss_pred cCCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 67899999999 99999999964443
No 190
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.77 E-value=1.1e-05 Score=62.00 Aligned_cols=36 Identities=14% Similarity=-0.058 Sum_probs=22.5
Q ss_pred CcccCeeeEeeC---CCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 20 PYLQGVNYNCVA---PGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 20 ~~l~~vsl~~i~---~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.-|.+++++ +. +|.++++.| ++||||||++..+...
T Consensus 11 ~~~~~~~~~-~~~~~~g~~i~i~G-~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 11 VDLGTENLY-FQSNAMSAFITFEG-PEGSGKTTVINEVYHR 49 (229)
T ss_dssp ----------CCCCCCCEEEEEEC-CTTSCHHHHHHHHHHH
T ss_pred cCccCCCee-EeecCCCeEEEEEc-CCCCCHHHHHHHHHHH
Confidence 357788887 76 999999999 9999999996554433
No 191
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.77 E-value=1.1e-05 Score=58.33 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=19.8
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.|++++|+| +|||||||++.. +...
T Consensus 3 ~~~~i~l~G-~~GsGKSTl~~~-La~~ 27 (173)
T 1kag_A 3 EKRNIFLVG-PMGAGKSTIGRQ-LAQQ 27 (173)
T ss_dssp CCCCEEEEC-CTTSCHHHHHHH-HHHH
T ss_pred CCCeEEEEC-CCCCCHHHHHHH-HHHH
Confidence 468899999 999999999544 4443
No 192
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.76 E-value=4.1e-06 Score=67.98 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=29.3
Q ss_pred CCcccCeeeEeeCCCC------eEEeecCCCCChHHHHHHHHHhccc
Q psy17517 19 EPYLQGVNYNCVAPGK------RFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge------~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
..++.+++.. +..++ +++|+| |||||||||+.. +.++.
T Consensus 73 ~~~l~~~~~~-~l~~~~~~~p~iigI~G-psGSGKSTl~~~-L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQ-FLGKPEPKVPYIIGIAG-SVAVGKSTTSRV-LKALL 116 (321)
T ss_dssp HHHHHHHHHH-HHTCCCCCCCEEEEEEC-CTTSSHHHHHHH-HHHHH
T ss_pred hHHHHHHHHH-HhccCCCCCCEEEEEEC-CCCCCHHHHHHH-HHHHh
Confidence 4577788887 77776 899999 999999999644 44443
No 193
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.74 E-value=1.4e-05 Score=58.88 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=23.0
Q ss_pred CeeeEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 24 ~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
++|++ ...|..++|+| ++||||||++..+.
T Consensus 2 ~~~~~-~~~~~~I~l~G-~~GsGKSTv~~~La 31 (184)
T 1y63_A 2 PGSME-QPKGINILITG-TPGTGKTSMAEMIA 31 (184)
T ss_dssp ----C-CCSSCEEEEEC-STTSSHHHHHHHHH
T ss_pred CcCcC-CCCCCEEEEEC-CCCCCHHHHHHHHH
Confidence 67898 99999999999 99999999975543
No 194
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.73 E-value=1.7e-06 Score=69.99 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=30.0
Q ss_pred CCcccCeeeEeeCCC-------CeEEeecCCCCChHHHHHHHHHh
Q psy17517 19 EPYLQGVNYNCVAPG-------KRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 19 ~~~l~~vsl~~i~~G-------e~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..+++++++. +.+| +.++++| |||+|||||++.+..
T Consensus 31 ~~~~~~l~~~-i~~~~~~~~~~~~~ll~G-p~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 31 ENVKKKLSLA-LEAAKMRGEVLDHVLLAG-PPGLGKTTLAHIIAS 73 (334)
T ss_dssp HHHHHHHHHH-HHHHHHHTCCCCCEEEES-STTSSHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHhcCCCCCeEEEEC-CCCCcHHHHHHHHHH
Confidence 4689999998 9877 8899999 999999999654433
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.72 E-value=3.1e-05 Score=68.31 Aligned_cols=28 Identities=25% Similarity=0.111 Sum_probs=22.2
Q ss_pred eeEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 26 NYNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 26 sl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+++ +++++.++++| ++|+|||||+.+++
T Consensus 3 s~~-~~~~~~i~IiG-~~gaGKTTLl~~L~ 30 (665)
T 2dy1_A 3 TEG-GAMIRTVALVG-HAGSGKTTLTEALL 30 (665)
T ss_dssp ----CCCEEEEEEEE-STTSSHHHHHHHHH
T ss_pred CCc-cCCCcEEEEEC-CCCChHHHHHHHHH
Confidence 456 88999999999 99999999965554
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.69 E-value=8.9e-05 Score=58.18 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEeecccCCCCH
Q psy17517 118 SGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDN 153 (163)
Q Consensus 118 SgGqkQrvaiAraL~~~~~~~p~lllLDEPts~LD~ 153 (163)
+++++.+..++.+.. .+|.++++||+.+-++.
T Consensus 97 ~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARH----MQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHH----TCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHH----cCCcEEEeccHHHhccc
Confidence 467777777777764 67999999999887654
No 197
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.68 E-value=2.1e-05 Score=58.91 Aligned_cols=28 Identities=18% Similarity=-0.024 Sum_probs=22.9
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
..+|.+++++| ||||||||++..+...+
T Consensus 9 ~~~~~~i~l~G-~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCG-PSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEEC-CTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEEC-CCCCCHHHHHHHHHHhC
Confidence 67899999999 99999999965554333
No 198
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.66 E-value=0.00042 Score=55.79 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=19.4
Q ss_pred CCCCEEEeecccCCCCHHHHHHHHhh
Q psy17517 137 HPAPFFVLDEIDAALDNTNIGKVASY 162 (163)
Q Consensus 137 ~~p~lllLDEPts~LD~~~~~~i~~~ 162 (163)
..|.++++||+... |......+.++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~ 148 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRL 148 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHH
Confidence 56889999999876 87777666543
No 199
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.65 E-value=1.5e-05 Score=68.18 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=27.8
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 53 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~ 53 (163)
...+++++++ +.+| +++|+| +||||||||+-+
T Consensus 48 f~~~~~~~l~-f~~g-~n~i~G-~NGaGKS~lleA 79 (517)
T 4ad8_A 48 LATITQLELE-LGGG-FCAFTG-ETGAGKSIIVDA 79 (517)
T ss_dssp BTTBSCEEEE-CCCS-EEEEEE-SHHHHHHHHTHH
T ss_pred ccceeeEEEe-cCCC-eEEEEc-CCCCCHHHHHHH
Confidence 4567899999 9999 999999 999999999533
No 200
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.64 E-value=5.7e-05 Score=56.94 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=25.4
Q ss_pred ccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 22 l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
+.+.+++ +.+ .+++|+| ||||||||++-++...+.
T Consensus 14 ~~~~~i~-f~~-~~~~I~G-~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 14 HSDTVVE-FKE-GINLIIG-QNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp BSSEEEE-CCS-EEEEEEC-CTTSSHHHHHHHHHHHHH
T ss_pred ccceEEE-eCC-CeEEEEc-CCCCCHHHHHHHHHHHhc
Confidence 4456777 766 4889999 999999999644444443
No 201
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.57 E-value=2.4e-05 Score=67.75 Aligned_cols=26 Identities=31% Similarity=0.183 Sum_probs=22.3
Q ss_pred EeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 28 NCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 28 ~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
. +.+|++++|+| +|||||||+++.+.
T Consensus 365 ~-~~~G~iI~LiG-~sGSGKSTLar~La 390 (552)
T 3cr8_A 365 R-ERQGFTVFFTG-LSGAGKSTLARALA 390 (552)
T ss_dssp G-GGSCEEEEEEE-SSCHHHHHHHHHHH
T ss_pred c-cccceEEEEEC-CCCChHHHHHHHHH
Confidence 5 78999999999 99999999954443
No 202
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.53 E-value=4.1e-05 Score=55.84 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=19.5
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+|++++++| ++||||||++..+.
T Consensus 3 ~~g~~i~l~G-~~GsGKST~~~~L~ 26 (179)
T 2pez_A 3 MRGCTVWLTG-LSGAGKTTVSMALE 26 (179)
T ss_dssp -CCEEEEEEC-CTTSSHHHHHHHHH
T ss_pred CCCcEEEEEC-CCCCCHHHHHHHHH
Confidence 4689999999 99999999964443
No 203
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.53 E-value=9.1e-06 Score=60.38 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=28.5
Q ss_pred eeeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 10 AFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 10 ~f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.|.||+. ..+++++++. .+..+ ++++| ++|+|||||+.++.
T Consensus 6 ~~~~~~~--~~~l~~~~~~-~~~~k-i~lvG-~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLY-KKTGK-LVFLG-LDNAGKTTLLHMLK 46 (198)
T ss_dssp ---------CHHHHHHTCT-TCCEE-EEEEE-ETTSSHHHHHHHHS
T ss_pred HHHHHHH--HHHHHHhhcc-CCCcE-EEEEC-CCCCCHHHHHHHHh
Confidence 4567753 5799999998 88874 78999 99999999965544
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.53 E-value=1.9e-05 Score=64.11 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=30.3
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..+++++++. +..|.+++++| ++|+||||++.++.
T Consensus 43 ~~~~~~l~~~-~~~~~~i~i~G-~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 43 TQLLDAIMPY-CGNTLRLGVTG-TPGAGKSTFLEAFG 77 (341)
T ss_dssp HHHHHHHGGG-CSCSEEEEEEE-CTTSCHHHHHHHHH
T ss_pred HHHHHhCCcc-cCCCEEEEEEc-CCCCCHHHHHHHHH
Confidence 3578899999 99999999999 99999999965543
No 205
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.52 E-value=4.8e-05 Score=57.27 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=17.7
Q ss_pred CCeEEeecCCCCChHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
+.+++|+| +|||||||++..+
T Consensus 5 ~~~i~i~G-~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDG-PSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEEC-CTTSSHHHHHHHH
T ss_pred CeEEEEEC-CCCCCHHHHHHHH
Confidence 56899999 9999999996444
No 206
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.45 E-value=6.8e-05 Score=61.01 Aligned_cols=41 Identities=5% Similarity=-0.078 Sum_probs=27.2
Q ss_pred eeCCCCCCCCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 11 FLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 11 f~y~~~~~~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..|...+...+|++++++ ++ .++++| ++|||||||+.++.+
T Consensus 16 ~~~~~~~~~~~l~~i~~~-lp---~I~vvG-~~~sGKSSLln~l~g 56 (360)
T 3t34_A 16 TALGDHGDSSALPTLWDS-LP---AIAVVG-GQSSGKSSVLESIVG 56 (360)
T ss_dssp TSCSSCCSSCCC----CC-CC---EEEEEC-BTTSSHHHHHHHHHT
T ss_pred HhhCcccccccccccccc-CC---EEEEEC-CCCCcHHHHHHHHhC
Confidence 344433345699999999 88 899999 999999999544444
No 207
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.42 E-value=0.00018 Score=60.26 Aligned_cols=37 Identities=19% Similarity=0.025 Sum_probs=30.3
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.+.|+.+.-- +.+|+++.|.| ++|+|||||++.+...
T Consensus 187 ~~~LD~~lgG-l~~G~l~ii~G-~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 187 FKELDQLIGT-LGPGSLNIIAA-RPAMGKTAFALTIAQN 223 (444)
T ss_dssp CHHHHHHHCC-CCTTCEEEEEE-CTTSCHHHHHHHHHHH
T ss_pred CHhhhhhcCC-cCCCcEEEEEe-CCCCCHHHHHHHHHHH
Confidence 4567777766 99999999999 9999999997665443
No 208
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.37 E-value=7.9e-05 Score=55.47 Aligned_cols=22 Identities=18% Similarity=-0.026 Sum_probs=17.2
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+++|+| +|||||||++.. +..+
T Consensus 4 ~i~l~G-~~GsGKST~~~~-La~l 25 (206)
T 1jjv_A 4 IVGLTG-GIGSGKTTIANL-FTDL 25 (206)
T ss_dssp EEEEEC-STTSCHHHHHHH-HHTT
T ss_pred EEEEEC-CCCCCHHHHHHH-HHHC
Confidence 588999 999999999544 4443
No 209
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.35 E-value=0.00013 Score=52.88 Aligned_cols=23 Identities=13% Similarity=-0.143 Sum_probs=19.0
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
|.++.++| ++||||||++..+.-
T Consensus 3 ~~~i~l~G-~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNG-GSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEEC-CTTSSHHHHHHHHHH
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHH
Confidence 56788999 999999999766544
No 210
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.33 E-value=9e-05 Score=54.05 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=19.3
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..|.+++++| ++||||||++..+.
T Consensus 2 ~~g~~I~l~G-~~GsGKST~~~~La 25 (186)
T 3cm0_A 2 DVGQAVIFLG-PPGAGKGTQASRLA 25 (186)
T ss_dssp -CEEEEEEEC-CTTSCHHHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 3578899999 99999999965543
No 211
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.32 E-value=0.00011 Score=54.60 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=16.5
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+++|+| +|||||||++..+.
T Consensus 3 ~i~i~G-~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTG-NIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEE-CTTSSHHHHHHHHH
T ss_pred EEEEEC-CCCcCHHHHHHHHH
Confidence 588999 99999999964443
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.30 E-value=0.00011 Score=55.22 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=23.0
Q ss_pred eEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 27 YNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 27 l~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+. +.+|.+++++| ++||||||++..+.
T Consensus 20 ~~-~~~~~~i~~~G-~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 20 LR-NQRGLTIWLTG-LSASGKSTLAVELE 46 (211)
T ss_dssp HH-TSSCEEEEEEC-STTSSHHHHHHHHH
T ss_pred cc-CCCCCEEEEEC-CCCCCHHHHHHHHH
Confidence 56 78999999999 99999999965443
No 213
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.30 E-value=0.00013 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=21.3
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..+|.+++++| ++||||||++..+.
T Consensus 10 ~~~~~~i~l~G-~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 10 IEKGIVVWLTG-LPGSGKTTIATRLA 34 (186)
T ss_dssp CSCCEEEEEEC-CTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEc-CCCCCHHHHHHHHH
Confidence 67889999999 99999999965543
No 214
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.29 E-value=4.7e-05 Score=62.66 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=28.9
Q ss_pred CcccCeeeEeeCCCCe--EEeecCCCCChHHHHHHHHH
Q psy17517 20 PYLQGVNYNCVAPGKR--FQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~--~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+++.+++. +++|++ ++++| ++||||||++..+.
T Consensus 10 ~il~~l~~~-i~~g~~~~i~l~G-~~G~GKTTl~~~la 45 (359)
T 2ga8_A 10 DVLQLLDNR-IEDNYRVCVILVG-SPGSGKSTIAEELC 45 (359)
T ss_dssp HHHHHHHHT-TTTCSCEEEEEEC-CTTSSHHHHHHHHH
T ss_pred HHHHHHHHH-hccCCeeEEEEEC-CCCCcHHHHHHHHH
Confidence 367888898 999999 99999 99999999965443
No 215
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.29 E-value=0.00012 Score=54.30 Aligned_cols=22 Identities=23% Similarity=0.210 Sum_probs=18.0
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..+++|+| ++||||||++..+.
T Consensus 18 ~~~I~l~G-~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMG-VSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEEC-STTSCHHHHHHHHH
T ss_pred CeEEEEEC-CCCCCHHHHHHHHH
Confidence 45789999 99999999975543
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.28 E-value=0.00012 Score=60.11 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=23.4
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+++|+++.|.| |+|||||||++.++..
T Consensus 58 i~~G~i~~I~G-ppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 58 YPRGRIVEIFG-QESSGKTTLALHAIAE 84 (356)
T ss_dssp EETTEEEEEEE-STTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEC-CCCCCHHHHHHHHHHH
Confidence 88999999999 9999999997665543
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.28 E-value=6.8e-05 Score=64.62 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=28.9
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++.+++++ + +|+.+.++| |||+||||+++.+...+
T Consensus 97 ~~l~~~~~~-~-~g~~vll~G-p~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 97 LAVQKLTKS-L-KGPILCLAG-PPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHHHHHSSS-C-CSCEEEEES-SSSSSHHHHHHHHHHHH
T ss_pred HHHHHhccc-C-CCCEEEEEC-CCCCCHHHHHHHHHHhc
Confidence 366788888 7 899999999 99999999965544433
No 218
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.28 E-value=0.00014 Score=53.35 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=18.2
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++++++ .+.. .++++| ++|+|||||+.++..
T Consensus 12 ~~l~~~~~~-~~~~-ki~~vG-~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLW-NKHG-KLLFLG-LDNAGKTTLLHMLKN 45 (190)
T ss_dssp -------------C-EEEEEE-STTSSHHHHHHHHHH
T ss_pred HHHHHhhcc-CCcc-EEEEEC-CCCCCHHHHHHHHhc
Confidence 478999998 7776 678999 999999999666554
No 219
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.27 E-value=0.00014 Score=52.00 Aligned_cols=20 Identities=15% Similarity=-0.175 Sum_probs=16.6
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+++|+| ++||||||++..+.
T Consensus 3 ~i~l~G-~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEG-PDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEEC-SSSSSHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 678898 99999999975554
No 220
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.24 E-value=0.00011 Score=56.98 Aligned_cols=33 Identities=15% Similarity=-0.054 Sum_probs=25.0
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
++.+.+ . ...+..+.++| ++||||||++..+..
T Consensus 22 ~~~~~~-~-~~~~~~i~l~G-~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 22 LTRGKK-S-SKQPIAILLGG-QSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHTTCC-C-CSSCEEEEEES-CGGGTTHHHHHHHHH
T ss_pred HHccCC-c-ccCCeEEEEEC-CCCCCHHHHHHHHHH
Confidence 344444 5 77888999999 999999999755543
No 221
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.22 E-value=0.00012 Score=62.71 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=28.2
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++++++ +++| +.|+| |||+|||||++.+...
T Consensus 54 ~~~~~lg~~-ip~G--vLL~G-ppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 54 SRFHEMGAR-IPKG--VLLVG-PPGVGKTHLARAVAGE 87 (499)
T ss_dssp GGTTTTSCC-CCSE--EEEEC-SSSSSHHHHHHHHHHH
T ss_pred hhhhhccCC-CCce--EEEEC-CCCCCHHHHHHHHHHH
Confidence 478889998 9998 88999 9999999996555433
No 222
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.22 E-value=0.00016 Score=51.52 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=16.1
Q ss_pred eEEeecCCCCChHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l 54 (163)
+++++| ++||||||++..+
T Consensus 3 ~I~l~G-~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITG-MPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEEC-CTTSCHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHH
Confidence 678888 9999999997554
No 223
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.22 E-value=0.00016 Score=60.15 Aligned_cols=26 Identities=4% Similarity=-0.106 Sum_probs=22.5
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+..|+.++++| +||+|||||+ +++.+
T Consensus 17 v~~g~~vgiVG-~pnaGKSTL~-n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVG-MPNVGKSTFF-RAITK 42 (392)
T ss_dssp SSSCCEEEEEE-CSSSSHHHHH-HHHHH
T ss_pred ccCCCEEEEEC-CCCCCHHHHH-HHHHC
Confidence 88999999999 9999999994 55555
No 224
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.20 E-value=3.6e-05 Score=61.97 Aligned_cols=38 Identities=26% Similarity=0.178 Sum_probs=31.7
Q ss_pred CCcccCeeeEeeCCCCe--EEeecCCCCChHHHHHHHHHhcc
Q psy17517 19 EPYLQGVNYNCVAPGKR--FQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~--~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
..+++.++.. +..|++ +.+.| |+|+||||+++.+...+
T Consensus 31 ~~~~~~L~~~-i~~g~~~~~ll~G-p~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKF-VDEGKLPHLLFYG-PPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHH-HHTTCCCCEEEEC-SSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhcCCCceEEEEC-CCCCCHHHHHHHHHHHH
Confidence 4588999998 999999 99999 99999999965554443
No 225
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.20 E-value=0.00018 Score=52.55 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=20.3
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
...+.++.++| ++||||||++..+.
T Consensus 2 ~~~~~~I~l~G-~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 2 MQTPALIIVTG-HPATGKTTLSQALA 26 (193)
T ss_dssp CSCCEEEEEEE-STTSSHHHHHHHHH
T ss_pred CCCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 35677899999 99999999975543
No 226
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.18 E-value=0.0002 Score=52.08 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=18.2
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
|.++++.| ++||||||++..+.
T Consensus 3 ~~~I~i~G-~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTG-VPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEEC-CTTSCHHHHHHHHH
T ss_pred CeEEEEEC-CCCCCHHHHHHHHH
Confidence 56889999 99999999975543
No 227
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.17 E-value=0.0002 Score=51.82 Aligned_cols=25 Identities=16% Similarity=-0.015 Sum_probs=19.1
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.+|..++++| ++|+|||||+.++..
T Consensus 2 ~~~~ki~ivG-~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 2 SHGMKVVIAG-RPNAGKSSLLNALAG 26 (172)
T ss_dssp --CEEEEEEE-STTSSHHHHHHHHHT
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHhC
Confidence 3678899999 999999999555443
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.16 E-value=0.00013 Score=58.32 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=26.8
Q ss_pred cC-eeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 23 QG-VNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 23 ~~-vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+ ++++ .. |++++++| ++|+||||++.++...+
T Consensus 89 ~~~i~~~-~~-~~vi~i~G-~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 89 EPKVIPD-KI-PYVIMLVG-VQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CCCCSCS-SS-SEEEEEEC-SSCSSTTHHHHHHHHHH
T ss_pred ccccccC-CC-CeEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 46 8898 87 99999999 99999999965554443
No 229
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.10 E-value=0.00023 Score=55.29 Aligned_cols=21 Identities=14% Similarity=-0.075 Sum_probs=17.4
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+++|+| |+||||||++..+..
T Consensus 3 li~I~G-~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYG-PTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHH
T ss_pred EEEEEC-CCCcCHHHHHHHHHh
Confidence 578899 999999999766543
No 230
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.08 E-value=0.0003 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=18.9
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.+..+.++| ++||||||++..+.-
T Consensus 4 ~~~~i~l~G-~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIG-LMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEEC-STTSSHHHHHHHHHH
T ss_pred CCCEEEEEC-CCCCCHHHHHHHHHH
Confidence 356788999 999999999765543
No 231
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.08 E-value=0.00027 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=18.9
Q ss_pred CeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+++++| +||||||||+..++..+
T Consensus 7 ~~i~i~G-~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAA-WSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEEC-CTTSCHHHHHHHHHHHH
T ss_pred eEEEEEe-CCCCCHHHHHHHHHHhc
Confidence 5788999 99999999965555443
No 232
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.08 E-value=0.00018 Score=57.36 Aligned_cols=25 Identities=12% Similarity=-0.193 Sum_probs=19.6
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
++.+++|+| ++|+|||||+.++++.
T Consensus 7 r~~~VaIvG-~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVG-RPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEEC-SSSSSHHHHHHHHHTC
T ss_pred cCCEEEEEC-CCCCCHHHHHHHHHCC
Confidence 345899999 9999999996555443
No 233
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.07 E-value=0.00023 Score=51.78 Aligned_cols=25 Identities=16% Similarity=-0.063 Sum_probs=20.1
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+..+..+.++| ++||||||++..+.
T Consensus 8 ~~~~~~i~i~G-~~GsGKst~~~~l~ 32 (180)
T 3iij_A 8 FMLLPNILLTG-TPGVGKTTLGKELA 32 (180)
T ss_dssp TCCCCCEEEEC-STTSSHHHHHHHHH
T ss_pred cccCCeEEEEe-CCCCCHHHHHHHHH
Confidence 44577889999 99999999975543
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.07 E-value=0.00027 Score=52.89 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=17.3
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
-++|+| |||||||||+..++..
T Consensus 3 pIVi~G-PSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISG-PSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEEC-CTTSSHHHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHHHh
Confidence 367899 9999999997665543
No 235
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.06 E-value=0.00034 Score=53.37 Aligned_cols=25 Identities=8% Similarity=-0.076 Sum_probs=20.5
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
-.+|.+++|+| ++||||||++..+.
T Consensus 13 ~~~~~~i~i~G-~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 13 KMKTIQIAIDG-PASSGKSTVAKIIA 37 (236)
T ss_dssp -CCCCEEEEEC-SSCSSHHHHHHHHH
T ss_pred ccCCcEEEEEC-CCCCCHHHHHHHHH
Confidence 57889999999 99999999964443
No 236
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.06 E-value=0.0003 Score=50.61 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=17.3
Q ss_pred CeEEeecCCCCChHHHHHHHHHh
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++.+.| ++||||||++..+..
T Consensus 3 ~~I~i~G-~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIG-CPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEEC-CTTSSHHHHHHHHHH
T ss_pred eEEEEec-CCCCCHHHHHHHHHh
Confidence 3577888 999999999765543
No 237
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.05 E-value=0.00027 Score=56.03 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=20.7
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
...+..+.++| ||||||||++..+..
T Consensus 30 ~~~~~livl~G-~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGG-QPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEEC-CTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEEC-CCCCCHHHHHHHHHH
Confidence 45677888888 999999999766543
No 238
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.05 E-value=0.00025 Score=54.53 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=20.8
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++++. ++.| +.++| |+|+||||++..+...
T Consensus 36 ~~~~~~~~-~~~~--vll~G-~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 36 RFQKLGGK-IPKG--VLMVG-PPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GC-----C-CCCE--EEEEC-CTTSCHHHHHHHHHHH
T ss_pred HHHHcCCC-CCCe--EEEEC-cCCCCHHHHHHHHHHH
Confidence 34455565 5555 88999 9999999997655443
No 239
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.99 E-value=0.00048 Score=50.73 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=20.4
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.+|.++++.| ++||||||++..+.-
T Consensus 2 ~~~~~I~l~G-~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 2 SRGALIVFEG-LDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCCEEEEEC-CTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEc-CCCCCHHHHHHHHHH
Confidence 3578899999 999999999755544
No 240
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.98 E-value=0.00041 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=18.8
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+|.++++.| ++||||||++..+.
T Consensus 3 ~~~~I~i~G-~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEG-IDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEEC-CTTSSHHHHHHHHH
T ss_pred CCeEEEEEc-CCCCCHHHHHHHHH
Confidence 366889999 99999999975543
No 241
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.97 E-value=0.00047 Score=50.39 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=19.9
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++.+++++| ++||||||++..+.
T Consensus 7 ~~~~~I~l~G-~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVG-GPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEE-CTTSSHHHHHHHHH
T ss_pred cCCCEEEEEC-CCCCCHHHHHHHHH
Confidence 4677899999 99999999975543
No 242
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.97 E-value=0.0004 Score=56.53 Aligned_cols=24 Identities=13% Similarity=-0.147 Sum_probs=19.5
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.+.+++|+| ++|||||||+..++.
T Consensus 73 ~~~~v~lvG-~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSG-PPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEEC-CTTSSHHHHHHHHHH
T ss_pred CceEEEEEc-CCCCCHHHHHHHHHH
Confidence 377899999 999999999655443
No 243
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.97 E-value=0.00043 Score=56.18 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=24.0
Q ss_pred EeeCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 28 NCVAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 28 ~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
- +++|+++.|.| |+|||||||++.++..
T Consensus 118 G-l~~G~i~~I~G-~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 G-IESMAITEAFG-EFRTGKTQLSHTLCVT 145 (343)
T ss_dssp S-BCSSEEEEEEC-CTTCTHHHHHHHHHHH
T ss_pred C-CCCCeEEEEEC-CCCCCHHHHHHHHHHH
Confidence 5 88999999999 9999999997665543
No 244
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.95 E-value=0.00038 Score=56.96 Aligned_cols=31 Identities=10% Similarity=-0.046 Sum_probs=23.9
Q ss_pred cccCeeeEeeCCCCeEEeecCCCCChHHHHHHHH
Q psy17517 21 YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
.+++..++ +.+ .+++|+| +|||||||++-++
T Consensus 15 ~~~~~~i~-f~~-gl~vi~G-~NGaGKT~ileAI 45 (371)
T 3auy_A 15 SHVNSRIK-FEK-GIVAIIG-ENGSGKSSIFEAV 45 (371)
T ss_dssp TEEEEEEE-CCS-EEEEEEE-CTTSSHHHHHHHH
T ss_pred cccceEEe-cCC-CeEEEEC-CCCCCHHHHHHHH
Confidence 34667777 766 5888999 9999999995333
No 245
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.95 E-value=0.00036 Score=50.57 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=16.6
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++|+| ++||||||++..+.
T Consensus 6 ~i~i~G-~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIG-FMGSGKSTLARALA 25 (175)
T ss_dssp CEEEEC-CTTSCHHHHHHHHH
T ss_pred EEEEEc-CCCCCHHHHHHHHH
Confidence 578898 99999999975554
No 246
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.95 E-value=0.00042 Score=50.84 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=16.9
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+++|.| ++||||||++..+..
T Consensus 2 ~I~i~G-~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFG-TVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEEC-CTTSCHHHHHHHHHH
T ss_pred EEEEEC-CCccCHHHHHHHHHH
Confidence 578999 999999999655443
No 247
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.94 E-value=0.00042 Score=53.63 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=17.4
Q ss_pred CeEEeecCCCCChHHHHHHHHH
Q psy17517 34 KRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~ 55 (163)
-+++|.| |+||||||++..+.
T Consensus 10 ~~i~i~G-~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDG-PAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEEC-CTTSSHHHHHHHHH
T ss_pred eEEEEEC-CCCCCHHHHHHHHH
Confidence 4788999 99999999975543
No 248
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.94 E-value=0.00044 Score=49.40 Aligned_cols=21 Identities=14% Similarity=-0.116 Sum_probs=17.0
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+.++..
T Consensus 5 ~v~lvG-~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIG-NPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEC-STTSSHHHHHHHHHC
T ss_pred EEEEEC-CCCCCHHHHHHHHhC
Confidence 578999 999999999655443
No 249
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00045 Score=50.25 Aligned_cols=22 Identities=9% Similarity=-0.009 Sum_probs=17.9
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+.++++.| ++||||||++..+.
T Consensus 3 ~~~I~l~G-~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLG-GPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEEC-CTTSSHHHHHHHHH
T ss_pred ceEEEEEC-CCCCCHHHHHHHHH
Confidence 45788999 99999999975543
No 250
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.93 E-value=0.00052 Score=50.87 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=20.4
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
...|.++++.| ++||||||++..+.
T Consensus 7 ~~~~~~I~l~G-~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 7 KKKGKFIVFEG-LDRSGKSTQSKLLV 31 (212)
T ss_dssp CBCSCEEEEEE-STTSSHHHHHHHHH
T ss_pred hhcCCEEEEEc-CCCCCHHHHHHHHH
Confidence 34688999999 99999999965443
No 251
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.91 E-value=0.00021 Score=53.08 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=16.6
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
++++.| ++||||||++..+.
T Consensus 2 ~I~i~G-~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEG-VDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEE-EEEEEHHHHHHHHH
T ss_pred EEEEEc-CCCCCHHHHHHHHH
Confidence 678999 99999999965544
No 252
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.90 E-value=0.00059 Score=50.61 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=20.2
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..+|.+++|.| ++||||||++..+.
T Consensus 6 ~~~~~~I~l~G-~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 6 ARRGALIVLEG-VDRAGKSTQSRKLV 30 (215)
T ss_dssp -CCCCEEEEEE-STTSSHHHHHHHHH
T ss_pred ccCCcEEEEEC-CCCCCHHHHHHHHH
Confidence 45688999999 99999999965543
No 253
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.90 E-value=0.00059 Score=51.57 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=26.8
Q ss_pred CCcccCeee-EeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 19 EPYLQGVNY-NCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 19 ~~~l~~vsl-~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+-|+.+-- - +++|+++.+.| ++|+|||||++.++
T Consensus 16 i~~LD~~l~GG-l~~G~l~~i~G-~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 16 IPGFDELIEGG-FPEGTTVLLTG-GTGTGKTTFAAQFI 51 (251)
T ss_dssp CTTTGGGTTTS-EETTCEEEEEC-CTTSSHHHHHHHHH
T ss_pred cHHHHHhhcCC-CCCCeEEEEEe-CCCCCHHHHHHHHH
Confidence 445555432 4 88999999999 99999999976544
No 254
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00021 Score=52.47 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=20.5
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+..+.+++++| ++||||||++..+.
T Consensus 9 ~~~~~~I~l~G-~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 9 LRKCKIIFIIG-GPGSGKGTQCEKLV 33 (199)
T ss_dssp HHHSCEEEEEE-CTTSSHHHHHHHHH
T ss_pred cCCCCEEEEEC-CCCCCHHHHHHHHH
Confidence 45677899999 99999999975543
No 255
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.88 E-value=0.00054 Score=51.38 Aligned_cols=22 Identities=18% Similarity=-0.047 Sum_probs=17.7
Q ss_pred CCCeEEeecCCCCChHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
.+-+++|.| ++||||||++..+
T Consensus 3 ~~~~I~i~G-~~GSGKST~~~~L 24 (218)
T 1vht_A 3 LRYIVALTG-GIGSGKSTVANAF 24 (218)
T ss_dssp CCEEEEEEC-CTTSCHHHHHHHH
T ss_pred CceEEEEEC-CCCCCHHHHHHHH
Confidence 345789999 9999999996443
No 256
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.87 E-value=0.00052 Score=49.81 Aligned_cols=20 Identities=10% Similarity=-0.090 Sum_probs=16.5
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
++++.| ++||||||++..+.
T Consensus 3 ~I~i~G-~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTG-IPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEE-CTTSCHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 578899 99999999975543
No 257
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.86 E-value=0.00071 Score=54.65 Aligned_cols=34 Identities=32% Similarity=0.224 Sum_probs=28.5
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..+.+..+. + .|.-+++.| +||+||||+++.++.
T Consensus 133 ~~~H~~~v~-~-~g~~vl~~G-~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVD-V-YGVGVLITG-DSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEE-E-TTEEEEEEE-STTSSHHHHHHHHHH
T ss_pred eeeeEEEEE-E-CCEEEEEEe-CCCCCHHHHHHHHHh
Confidence 467788887 7 788999999 999999999776664
No 258
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.85 E-value=0.0005 Score=57.70 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=25.2
Q ss_pred cCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 23 ~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
++++++ ++++++++| ++||||||++.++...+
T Consensus 91 ~~i~l~---~~~vi~i~G-~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 91 RLPVLK---DRNLWFLVG-LQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCCC---SSEEEEEEC-CTTSSHHHHHHHHHHHH
T ss_pred ccccCC---CCeEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 566664 889999999 99999999965554444
No 259
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.85 E-value=0.00062 Score=54.65 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=24.1
Q ss_pred EeeCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 28 NCVAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 28 ~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
- +++|+++.|.| |+|||||||++.++..
T Consensus 103 G-l~~G~i~~i~G-~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 G-IETRTMTEFFG-EFGSGKTQLCHQLSVN 130 (324)
T ss_dssp S-EETTSEEEEEE-STTSSHHHHHHHHHHH
T ss_pred C-CCCCcEEEEEC-CCCCCHhHHHHHHHHH
Confidence 5 88999999999 9999999997665543
No 260
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.85 E-value=0.00055 Score=50.47 Aligned_cols=24 Identities=17% Similarity=0.046 Sum_probs=18.9
Q ss_pred CeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+++++| ++||||||++.+++..+
T Consensus 5 ~~i~i~G-~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVG-YKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEEC-CTTSSHHHHHHHHHHHH
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHhh
Confidence 3688999 99999999976655544
No 261
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.83 E-value=0.0006 Score=61.37 Aligned_cols=29 Identities=24% Similarity=0.184 Sum_probs=24.0
Q ss_pred eEeeCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 27 YNCVAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 27 l~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+. +.+|+.+.|+| |||||||||++.+...
T Consensus 233 l~-i~~~~~vLL~G-p~GtGKTtLarala~~ 261 (806)
T 1ypw_A 233 IG-VKPPRGILLYG-PPGTGKTLIARAVANE 261 (806)
T ss_dssp SC-CCCCCEEEECS-CTTSSHHHHHHHHHHT
T ss_pred cC-CCCCCeEEEEC-cCCCCHHHHHHHHHHH
Confidence 46 88999999999 9999999996555443
No 262
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.80 E-value=0.00056 Score=49.69 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.3
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| ++|+|||||+.++.
T Consensus 4 kv~ivG-~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVG-NTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEES-CTTSSHHHHHHHHT
T ss_pred EEEEEC-CCCCCHHHHHHHHh
Confidence 478999 99999999955443
No 263
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.80 E-value=0.00071 Score=49.68 Aligned_cols=21 Identities=19% Similarity=-0.001 Sum_probs=17.1
Q ss_pred CCeEEeecCCCCChHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
..+++|+| ++||||||++..+
T Consensus 8 ~~~I~i~G-~~GsGKST~~~~L 28 (203)
T 1uf9_A 8 PIIIGITG-NIGSGKSTVAALL 28 (203)
T ss_dssp CEEEEEEE-CTTSCHHHHHHHH
T ss_pred ceEEEEEC-CCCCCHHHHHHHH
Confidence 35788999 9999999996443
No 264
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.79 E-value=0.00069 Score=48.90 Aligned_cols=21 Identities=14% Similarity=-0.116 Sum_probs=17.1
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+.++..
T Consensus 9 ~i~lvG-~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIG-NPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEC-STTSSHHHHHHHHHT
T ss_pred EEEEEC-CCCCCHHHHHHHHhC
Confidence 578999 999999999655544
No 265
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.79 E-value=0.00053 Score=49.63 Aligned_cols=24 Identities=21% Similarity=-0.093 Sum_probs=14.4
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++.++.+.| ++||||||++..+.
T Consensus 3 ~~~~~I~l~G-~~GsGKST~a~~La 26 (183)
T 2vli_A 3 MRSPIIWING-PFGVGKTHTAHTLH 26 (183)
T ss_dssp --CCEEEEEC-CC----CHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 3567888999 99999999975543
No 266
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.79 E-value=0.0008 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=19.1
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+|-+++++| ++||||||++..+.
T Consensus 3 ~~~~I~l~G-~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIG-PPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEEC-CTTSSHHHHHHHHH
T ss_pred CCcEEEEEC-CCCCCHHHHHHHHH
Confidence 567889999 99999999975553
No 267
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.76 E-value=0.00067 Score=51.59 Aligned_cols=38 Identities=26% Similarity=0.195 Sum_probs=29.1
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
...+.+..+. + .|..+.|+| |+|+|||||++.++....
T Consensus 22 ~~~lHa~~v~-~-~g~~ilI~G-psGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 22 RRSMHGVLVD-I-YGLGVLITG-DSGVGKSETALELVQRGH 59 (205)
T ss_dssp CCCEESEEEE-E-TTEEEEEEC-CCTTTTHHHHHHHHTTTC
T ss_pred ceeeeEEEEE-E-CCEEEEEEC-CCCCCHHHHHHHHHHhCC
Confidence 3467777776 5 568899999 999999999877765444
No 268
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.74 E-value=0.00077 Score=49.26 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=16.9
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
++++.| ++||||||++..+..
T Consensus 2 ~I~l~G-~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEG-IDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEEC-STTSSHHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHHH
Confidence 578898 999999999755543
No 269
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.72 E-value=0.00088 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=18.7
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..++.+++++| ++||||||++..+.
T Consensus 4 ~~~~~~I~l~G-~~GsGKsT~a~~La 28 (227)
T 1zd8_A 4 SARLLRAVIMG-APGSGKGTVSSRIT 28 (227)
T ss_dssp ---CCEEEEEE-CTTSSHHHHHHHHH
T ss_pred cccCcEEEEEC-CCCCCHHHHHHHHH
Confidence 34567899999 99999999975554
No 270
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.72 E-value=0.00086 Score=50.44 Aligned_cols=24 Identities=8% Similarity=-0.093 Sum_probs=19.2
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..+.+++++| ++||||||++..+.
T Consensus 3 ~~~~~I~l~G-~~GsGKsT~~~~La 26 (222)
T 1zak_A 3 ADPLKVMISG-APASGKGTQCELIK 26 (222)
T ss_dssp CCSCCEEEEE-STTSSHHHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 3456789999 99999999975543
No 271
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.70 E-value=0.001 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=19.2
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..+.+++++| ++||||||++..+.
T Consensus 18 ~~~~~I~l~G-~~GsGKST~a~~La 41 (201)
T 2cdn_A 18 GSHMRVLLLG-PPGAGKGTQAVKLA 41 (201)
T ss_dssp CSCCEEEEEC-CTTSSHHHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 4456788999 99999999975553
No 272
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.68 E-value=0.00084 Score=53.18 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=23.5
Q ss_pred eEeeCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 27 YNCVAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 27 l~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+. +.++..+.+.| |+|+||||++..+...
T Consensus 44 ~~-~~~~~~vLL~G-p~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 44 FG-MTPSKGVLFYG-PPGCGKTLLAKAIANE 72 (301)
T ss_dssp HC-CCCCSEEEEEC-SSSSSHHHHHHHHHHH
T ss_pred cC-CCCCceEEEEC-CCCcCHHHHHHHHHHH
Confidence 45 67889999999 9999999997665443
No 273
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.68 E-value=0.00084 Score=48.80 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.1
Q ss_pred CeEEeecCCCCChHHHHHHHHH
Q psy17517 34 KRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+++|+| ++||||||++..+.
T Consensus 3 ~~I~l~G-~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVG-LPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEEC-STTSSHHHHHHHHH
T ss_pred CeEEEEC-CCCCCHHHHHHHHH
Confidence 4688999 99999999975543
No 274
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.66 E-value=0.00087 Score=49.98 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.7
Q ss_pred eEEeecCCCCChHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l 54 (163)
.++|.| ++||||||++..+
T Consensus 2 ~I~l~G-~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMG-LPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEEC-STTSSHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHH
Confidence 467888 9999999997554
No 275
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.66 E-value=0.00068 Score=51.65 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=18.9
Q ss_pred eCCCCeEEeecCCCCChHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAA 51 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~ 51 (163)
+..|+.++++| |+||||||++
T Consensus 73 i~~g~~~~i~g-~TGsGKTt~~ 93 (235)
T 3llm_A 73 ISQNSVVIIRG-ATGCGKTTQV 93 (235)
T ss_dssp HHHCSEEEEEC-CTTSSHHHHH
T ss_pred HhcCCEEEEEe-CCCCCcHHhH
Confidence 66799999999 9999999974
No 276
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.64 E-value=0.00096 Score=53.23 Aligned_cols=26 Identities=12% Similarity=-0.055 Sum_probs=22.9
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+++|+++.|.| ++|+|||||++.++.
T Consensus 95 l~~g~i~~i~G-~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 95 LESQSVTEFAG-VFGSGKTQIMHQSCV 120 (322)
T ss_dssp EETTEEEEEEE-STTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEC-CCCCCHHHHHHHHHH
Confidence 88999999999 999999999766553
No 277
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.64 E-value=0.0012 Score=54.00 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=28.6
Q ss_pred cceeeCCCCCCCCcccCeeeEeeC---CCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 8 AQAFLGPENPEEPYLQGVNYNCVA---PGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 8 ~~~f~y~~~~~~~~l~~vsl~~i~---~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+.-|-+... +.+++-|+ +. .. .+.-++++| ++||||||+++.++.
T Consensus 10 G~~~G~~~~-g~~v~~d~-~~-~~~~~~~~~~~i~G-~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 10 GIVLGKDRD-GGLVLVDI-WK-RGGDRTNSNWTILA-KPGAGKSFTAKMLLL 57 (392)
T ss_dssp CEEEEECTT-SCEEEECT-TC-CBTTBCCCCEEEEC-CTTSSHHHHHHHHHH
T ss_pred ccEEEEeCC-CCeEEEec-cc-CcCccccCceEEEc-CCCCCHHHHHHHHHH
Confidence 444444433 34555555 32 22 566788999 999999999655543
No 278
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.63 E-value=0.00094 Score=47.84 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=17.0
Q ss_pred CeEEeecCCCCChHHHHHHHHH
Q psy17517 34 KRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++.| ++||||||++..+.
T Consensus 3 ~~I~l~G-~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVG-ARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEES-CTTSSHHHHHHHHH
T ss_pred ceEEEEC-CCCCCHHHHHHHHH
Confidence 3678999 99999999975543
No 279
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.62 E-value=0.0011 Score=47.59 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=17.4
Q ss_pred CeEEeecCCCCChHHHHHHHHH
Q psy17517 34 KRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~ 55 (163)
++++|.| +.||||||++..+.
T Consensus 8 ~~i~l~G-~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIG-FMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEES-CTTSSHHHHHHHHH
T ss_pred ceEEEEC-CCCCCHHHHHHHHH
Confidence 5788999 99999999975543
No 280
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.62 E-value=0.001 Score=49.55 Aligned_cols=34 Identities=12% Similarity=-0.140 Sum_probs=24.9
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..+....+. -.|.-+.+.| +||+||||+++.++.
T Consensus 5 ~~lHas~v~--v~G~gvli~G-~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV--IDKMGVLITG-EANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE--ETTEEEEEEE-SSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE--ECCEEEEEEc-CCCCCHHHHHHHHHH
Confidence 345555554 3577888999 999999999766654
No 281
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.62 E-value=0.0012 Score=48.83 Aligned_cols=23 Identities=13% Similarity=0.006 Sum_probs=18.0
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
...++++.| ++||||||++..+.
T Consensus 14 ~~~~I~l~G-~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLG-GPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEEC-STTSSHHHHHHHHH
T ss_pred CCcEEEEEC-CCCCCHHHHHHHHH
Confidence 345788999 99999999975543
No 282
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.60 E-value=0.0011 Score=49.52 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.2
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++|+| ++||||||++..+.
T Consensus 2 ~I~l~G-~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMG-LPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEEC-STTSSHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 467888 99999999975543
No 283
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.58 E-value=0.0012 Score=47.93 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=17.7
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..++++.| ++||||||++..+.
T Consensus 6 ~~~I~l~G-~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLG-GPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEE-STTSSHHHHHHHHH
T ss_pred CcEEEEEC-CCCCCHHHHHHHHH
Confidence 35788999 99999999975543
No 284
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.57 E-value=0.0011 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.109 Sum_probs=16.8
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
++++.| ++||||||++..+.-
T Consensus 2 ~I~l~G-~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEG-IDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEEC-STTSCHHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHHH
Confidence 578898 999999999755543
No 285
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.57 E-value=0.0012 Score=51.33 Aligned_cols=23 Identities=17% Similarity=-0.039 Sum_probs=18.7
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+.++.++| ++||||||++..+.
T Consensus 3 ~~~lIvl~G-~pGSGKSTla~~La 25 (260)
T 3a4m_A 3 DIMLIILTG-LPGVGKSTFSKNLA 25 (260)
T ss_dssp CCEEEEEEC-CTTSSHHHHHHHHH
T ss_pred CCEEEEEEc-CCCCCHHHHHHHHH
Confidence 456788999 99999999975554
No 286
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.54 E-value=0.0014 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=19.6
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++-+++|.| ++||||||++..+.
T Consensus 27 ~~~~~I~l~G-~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLG-APGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEEC-CTTSSHHHHHHHHH
T ss_pred CCCcEEEEEC-CCCCCHHHHHHHHH
Confidence 4567889999 99999999975553
No 287
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.54 E-value=0.0012 Score=47.03 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=16.2
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
++++.| ++||||||++..+.
T Consensus 2 ~I~l~G-~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIG-FMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEES-CTTSCHHHHHHHHH
T ss_pred eEEEEC-CCCCCHHHHHHHHH
Confidence 477888 99999999975543
No 288
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.52 E-value=0.0015 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=19.3
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+|.++.+.| |.||||||+++.++
T Consensus 2 ~g~i~vi~G-~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITG-PMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEE-STTSSHHHHHHHHH
T ss_pred ccEEEEEEC-CCCCCHHHHHHHHH
Confidence 478899999 99999999975554
No 289
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.51 E-value=0.0014 Score=48.33 Aligned_cols=19 Identities=16% Similarity=-0.064 Sum_probs=16.3
Q ss_pred eEEeecCCCCChHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l 54 (163)
+++|.| ++||||||++..+
T Consensus 4 ~i~i~G-~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDG-PSASGKSSVARRV 22 (208)
T ss_dssp EEEEEC-STTSSHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHH
Confidence 788999 9999999997554
No 290
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.51 E-value=0.0012 Score=50.76 Aligned_cols=20 Identities=5% Similarity=-0.115 Sum_probs=16.8
Q ss_pred CeEEeecCCCCChHHHHHHHH
Q psy17517 34 KRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l 54 (163)
-+++|.| ++||||||++..+
T Consensus 23 ~iI~I~G-~~GSGKST~a~~L 42 (252)
T 1uj2_A 23 FLIGVSG-GTASGKSSVCAKI 42 (252)
T ss_dssp EEEEEEC-STTSSHHHHHHHH
T ss_pred EEEEEEC-CCCCCHHHHHHHH
Confidence 4688998 9999999997544
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.48 E-value=0.0012 Score=55.44 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=20.8
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
++.+++++| ++||||||++.++...+
T Consensus 96 ~~~vI~lvG-~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVG-VQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECC-CTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 578999999 99999999965554443
No 292
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.47 E-value=0.0016 Score=53.15 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
.+.+++|+| |+|||||||++.+.-.+.
T Consensus 39 ~~~lIvI~G-PTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMG-ATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEEC-STTSSHHHHHHHHHTTSC
T ss_pred CCceEEEEC-CCCCCHHHHHHHHHHHCC
Confidence 456899999 999999999877665553
No 293
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.47 E-value=0.0016 Score=53.23 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.2
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+++|+++.|.| ++|+|||||++.++..
T Consensus 60 l~~G~ii~I~G-~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYG-PESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEEC-STTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEEC-CCCCCHHHHHHHHHHH
Confidence 78999999999 9999999997665543
No 294
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.45 E-value=0.0019 Score=48.19 Aligned_cols=23 Identities=9% Similarity=-0.213 Sum_probs=19.4
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+..+.+.| |+|+||||++..+.
T Consensus 51 ~~~~~ll~G-~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWG-PVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEEC-STTSSHHHHHHHHH
T ss_pred CCCeEEEEC-CCCCCHHHHHHHHH
Confidence 578899999 99999999975554
No 295
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.39 E-value=0.0011 Score=52.70 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=15.1
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+-+++|.| ++||||||++..+.
T Consensus 4 ~~~iIgItG-~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 4 KHPIISVTG-SSGAGTSTVKHTFD 26 (290)
T ss_dssp TSCEEEEES-CC---CCTHHHHHH
T ss_pred CceEEEEEC-CCCCCHHHHHHHHH
Confidence 345789999 99999999975443
No 296
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.37 E-value=0.0017 Score=53.00 Aligned_cols=24 Identities=8% Similarity=-0.058 Sum_probs=18.8
Q ss_pred CeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+++|+| |+|||||||+..+...+
T Consensus 8 ~lI~I~G-ptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVG-PTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEEC-STTSSHHHHHHHHHHHT
T ss_pred ceEEEEC-CCcCcHHHHHHHHHHHc
Confidence 3688999 99999999986655433
No 297
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.35 E-value=0.0019 Score=49.02 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.7
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+.++++
T Consensus 31 ~i~lvG-~~g~GKStlin~l~g 51 (239)
T 3lxx_A 31 RIVLVG-KTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHT
T ss_pred EEEEEC-CCCCCHHHHHHHHcC
Confidence 478999 999999999554443
No 298
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.35 E-value=0.0018 Score=48.36 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=16.3
Q ss_pred CeEEeecCCCCChHHHHHHHH
Q psy17517 34 KRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l 54 (163)
-+++|+| +.||||||++..+
T Consensus 13 ~iIgltG-~~GSGKSTva~~L 32 (192)
T 2grj_A 13 MVIGVTG-KIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEEC-STTSSHHHHHHHH
T ss_pred eEEEEEC-CCCCCHHHHHHHH
Confidence 3678999 9999999996444
No 299
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.35 E-value=0.0017 Score=55.74 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=27.5
Q ss_pred CeeeEeeCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 24 ~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++ +..+.-+.|.| .+||||||++..++..+
T Consensus 159 pv~ld-L~~~pHlLIaG-~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 159 PVVAD-LAKMPHLLVAG-TTGSGASVGVNAMILSM 191 (512)
T ss_dssp EEEEE-GGGSCSEEEEC-CTTSSHHHHHHHHHHHH
T ss_pred EEEEE-cccCceEEEEC-CCCCCHHHHHHHHHHHH
Confidence 57898 99999999999 99999999976665433
No 300
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.34 E-value=0.0023 Score=44.68 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.2
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++..+-
T Consensus 5 ~i~v~G-~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLG-SGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHHcCC
Confidence 478999 99999999966665443
No 301
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.34 E-value=0.0019 Score=48.53 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=18.5
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+|-+++++| +.||||||++..+.
T Consensus 4 ~~~~I~l~G-~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIG-APGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEE-CTTSSHHHHHHHHH
T ss_pred CceEEEEEC-CCCCCHHHHHHHHH
Confidence 456788999 99999999975543
No 302
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.34 E-value=0.0022 Score=53.33 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=20.9
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
-....++.++| ++||||||++..+..
T Consensus 255 ~~~~~lIil~G-~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVG-FPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEES-CTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEEC-CCCCCHHHHHHHHHH
Confidence 45568899999 999999999766543
No 303
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.32 E-value=0.002 Score=48.69 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=16.2
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
++++.| ++||||||++..+.
T Consensus 2 ~I~l~G-~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFG-PNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEEC-CTTSCHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 577888 99999999975543
No 304
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.32 E-value=0.0015 Score=53.40 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=21.9
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHH
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
+.++++++|+ | +++| ++|+|||||+..+
T Consensus 30 k~~~~~~~~~-I------~vvG-~~g~GKSTLln~L 57 (361)
T 2qag_A 30 KSVKKGFEFT-L------MVVG-ESGLGKSTLINSL 57 (361)
T ss_dssp HHHHHCCEEC-E------EECC-CTTSCHHHHHHHH
T ss_pred eeecCCCCEE-E------EEEc-CCCCCHHHHHHHH
Confidence 3467788887 5 8999 9999999995443
No 305
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.31 E-value=0.0018 Score=50.94 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=17.1
Q ss_pred CCeEEeecCCCCChHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
..+++|.| ++||||||++..+
T Consensus 75 ~~iI~I~G-~~GSGKSTva~~L 95 (281)
T 2f6r_A 75 LYVLGLTG-ISGSGKSSVAQRL 95 (281)
T ss_dssp CEEEEEEE-CTTSCHHHHHHHH
T ss_pred CEEEEEEC-CCCCCHHHHHHHH
Confidence 34689999 9999999996444
No 306
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.29 E-value=0.0024 Score=44.74 Aligned_cols=23 Identities=9% Similarity=-0.070 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++....
T Consensus 7 ~i~v~G-~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVG-NGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHCC
T ss_pred EEEEEC-cCCCCHHHHHHHHHcCC
Confidence 468999 99999999976665543
No 307
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.29 E-value=0.0021 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=17.5
Q ss_pred CeEEeecCCCCChHHHHHHHHHh
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++.++| ++||||||++..+..
T Consensus 3 ~~I~l~G-~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIG-CPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEEC-CTTSSHHHHHHHHHH
T ss_pred eEEEEEC-CCCCCHHHHHHHHHH
Confidence 3678888 999999999765543
No 308
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0024 Score=46.20 Aligned_cols=23 Identities=13% Similarity=-0.133 Sum_probs=18.2
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+..+....
T Consensus 50 ~i~vvG-~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAG-PQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHSS
T ss_pred EEEEEC-CCCCCHHHHHHHHhcCC
Confidence 688999 99999999965555443
No 309
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.28 E-value=0.0025 Score=44.35 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| +.|+|||||+.++...
T Consensus 5 ~i~v~G-~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVG-AGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 478999 9999999996665544
No 310
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.28 E-value=0.0028 Score=45.17 Aligned_cols=25 Identities=16% Similarity=-0.045 Sum_probs=19.1
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.+..+.+.| |+|+||||++..+...
T Consensus 42 ~~~~~ll~G-~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIG-EPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEEC-CTTSCHHHHHHHHHHH
T ss_pred CCCceEEEC-CCCCCHHHHHHHHHHH
Confidence 346688998 9999999997555443
No 311
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.0023 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=19.9
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..+..+.|.| |+|+|||||+..+..
T Consensus 43 ~~~~~vli~G-~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYG-LTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEE-CTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEC-CCCCCHHHHHHHHHH
Confidence 3477899999 999999999655443
No 312
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.26 E-value=0.0026 Score=44.31 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 3 ki~v~G-~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVG-RPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHC
T ss_pred EEEEEC-CCCCCHHHHHHHHhCC
Confidence 478999 9999999996665544
No 313
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.25 E-value=0.0025 Score=51.62 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=19.7
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+.+++|+| |+|||||||++.+.-.+
T Consensus 3 ~~~i~i~G-ptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVG-PTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEEC-CTTSCHHHHHHHHHHTT
T ss_pred CcEEEEEC-CCcCCHHHHHHHHHHhC
Confidence 34788999 99999999987765444
No 314
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.25 E-value=0.0023 Score=47.84 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=16.1
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+++.| ++||||||++..+.
T Consensus 2 ~I~l~G-~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLG-APVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEE-STTSSHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 467899 99999999975543
No 315
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.22 E-value=0.0025 Score=49.59 Aligned_cols=22 Identities=18% Similarity=-0.150 Sum_probs=17.5
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|||||||+.++.+.
T Consensus 5 ~i~lvG-~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVG-NPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEE-CSSSSHHHHHHHHHTT
T ss_pred EEEEEC-CCCCCHHHHHHHHhCC
Confidence 578999 9999999996555443
No 316
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.22 E-value=0.0024 Score=48.76 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=20.7
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.....++.|+| |+||||+|.+..+.
T Consensus 26 ~~k~kiI~llG-pPGsGKgTqa~~L~ 50 (217)
T 3umf_A 26 LAKAKVIFVLG-GPGSGKGTQCEKLV 50 (217)
T ss_dssp TTSCEEEEEEC-CTTCCHHHHHHHHH
T ss_pred ccCCcEEEEEC-CCCCCHHHHHHHHH
Confidence 66677899999 99999999975543
No 317
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.21 E-value=0.0029 Score=44.20 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| +.|+|||||+.++...
T Consensus 6 ~i~v~G-~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVG-SGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 478999 9999999996665544
No 318
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.20 E-value=0.0032 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=19.4
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..+.++.++| +.||||||++..+.
T Consensus 14 ~~~~~I~l~G-~~GsGKsT~a~~La 37 (233)
T 1ak2_A 14 PKGVRAVLLG-PPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCCEEEEEC-CTTSSHHHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 4567889999 99999999975543
No 319
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.19 E-value=0.003 Score=44.89 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++....
T Consensus 10 ~i~v~G-~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILG-DSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHHhCc
Confidence 478999 99999999966655543
No 320
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.19 E-value=0.003 Score=44.28 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=18.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 5 ~i~v~G-~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLG-EAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHhcCC
Confidence 368999 99999999966655443
No 321
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.19 E-value=0.003 Score=44.44 Aligned_cols=22 Identities=14% Similarity=-0.096 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 8 ~i~v~G-~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLG-EGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEC-CTTSCHHHHHHHHHHC
T ss_pred EEEEEC-cCCCCHHHHHHHHHcC
Confidence 478999 9999999997665544
No 322
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.16 E-value=0.003 Score=45.90 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=18.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.+++.+.
T Consensus 22 ki~ivG-~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVG-NLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEC-CTTSCHHHHHHHHHHSS
T ss_pred EEEEEC-CCCCCHHHHHHHHhcCC
Confidence 477999 99999999966666554
No 323
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.0031 Score=44.25 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| +.|+|||||+.++...
T Consensus 5 ~i~v~G-~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFG-AGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHTC
T ss_pred EEEEEC-CCCCCHHHHHHHHHcC
Confidence 478999 9999999996665543
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.15 E-value=0.0031 Score=44.28 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 5 ~i~v~G-~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIG-DSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHC
T ss_pred EEEEEC-cCCCCHHHHHHHHHhC
Confidence 378999 9999999996665544
No 325
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.15 E-value=0.0033 Score=44.14 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=18.2
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 8 ~i~v~G-~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLG-DTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHSC
T ss_pred EEEEEC-cCCCCHHHHHHHHHcCC
Confidence 478999 99999999976665544
No 326
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.14 E-value=0.0026 Score=53.05 Aligned_cols=21 Identities=14% Similarity=-0.008 Sum_probs=17.1
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| +||+|||||+.++++
T Consensus 182 kvaivG-~~gvGKSTLln~l~g 202 (439)
T 1mky_A 182 KVAIVG-RPNVGKSTLFNAILN 202 (439)
T ss_dssp EEEEEC-STTSSHHHHHHHHHT
T ss_pred eEEEEC-CCCCCHHHHHHHHhC
Confidence 689999 999999999544443
No 327
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.13 E-value=0.0032 Score=44.65 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=17.8
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 11 ~i~v~G-~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVG-GGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEE-CTTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 478999 9999999996665544
No 328
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.13 E-value=0.0033 Score=44.59 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 9 ~i~v~G-~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLG-DGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHcC
Confidence 478999 9999999996665544
No 329
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.12 E-value=0.0031 Score=44.57 Aligned_cols=22 Identities=23% Similarity=-0.006 Sum_probs=17.4
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 6 ki~i~G-~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLG-DPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHCC
T ss_pred EEEEEC-CCCccHHHHHHHHhcC
Confidence 478999 9999999996555433
No 330
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.12 E-value=0.0034 Score=43.94 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++..+
T Consensus 5 ki~v~G-~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLG-SGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHC
T ss_pred EEEEEC-CCCCCHHHHHHHHHcC
Confidence 468999 9999999996666554
No 331
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.11 E-value=0.0034 Score=43.95 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| +.|+|||||+.++..+-
T Consensus 8 ~i~v~G-~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLG-ESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHHcCC
Confidence 468999 99999999976665543
No 332
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.10 E-value=0.0029 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.144 Sum_probs=18.9
Q ss_pred CeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
..++|+| |+||||||++..+...+
T Consensus 6 ~~i~i~G-ptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMG-PTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEEC-CTTSCHHHHHHHHHHHS
T ss_pred cEEEEEC-CCCCCHHHHHHHHHHHc
Confidence 4688999 99999999976665433
No 333
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.07 E-value=0.0046 Score=43.85 Aligned_cols=26 Identities=15% Similarity=-0.075 Sum_probs=19.7
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+..-.++++| ++|+|||||+.++...
T Consensus 6 ~~~~~i~v~G-~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMG-HVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEES-CTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHhCC
Confidence 3445688999 9999999996555443
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.06 E-value=0.0032 Score=45.34 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=17.9
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 25 ~i~v~G-~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVG-RSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEE-BTTSSHHHHHHHHHTS
T ss_pred EEEEEC-CCCCCHHHHHHHHHcC
Confidence 578999 9999999996665544
No 335
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.06 E-value=0.0036 Score=51.41 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.3
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+++|+++.|.| ++|+|||||++.++..
T Consensus 71 l~~G~li~I~G-~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 71 IPRGRITEIYG-PESGGKTTLALAIVAQ 97 (366)
T ss_dssp EETTSEEEEEE-STTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEc-CCCCChHHHHHHHHHH
Confidence 78999999999 9999999998666543
No 336
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.05 E-value=0.0035 Score=44.13 Aligned_cols=20 Identities=20% Similarity=0.029 Sum_probs=16.2
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| ++|+|||||+.++.
T Consensus 4 ki~ivG-~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVG-ESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEC-STTSSHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 368999 99999999965543
No 337
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.04 E-value=0.0033 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.003 Sum_probs=19.4
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
-+|.++++.| ++||||||++..+.
T Consensus 4 m~g~~i~~eG-~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEG-PEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEEC-STTSSHHHHHHHHH
T ss_pred CCceEEEEEc-CCCCCHHHHHHHHH
Confidence 4688999999 99999999965443
No 338
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.04 E-value=0.0034 Score=44.75 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=19.2
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+..+.+.| |+|+||||++..+...+
T Consensus 42 ~~~~vll~G-~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLG-DPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEES-CGGGCHHHHHHHHHHHH
T ss_pred CCCceEEEC-CCCCCHHHHHHHHHHHH
Confidence 355678888 99999999975554433
No 339
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.02 E-value=0.0034 Score=45.45 Aligned_cols=23 Identities=13% Similarity=-0.075 Sum_probs=18.1
Q ss_pred CeEEeecCCCCChHHHHHHHHHhc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
-.++++| ++|+|||||+.+++..
T Consensus 24 ~~i~v~G-~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAG-RSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEE-BTTSSHHHHHHHHHTC
T ss_pred CEEEEEC-CCCCCHHHHHHHHhCC
Confidence 3578999 9999999996555544
No 340
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.02 E-value=0.0037 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=19.2
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
-+|.++++.| ++||||||++..+.
T Consensus 25 ~~~~~i~~eG-~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 25 MNAKFIVIEG-LEGAGKSTAIQVVV 48 (236)
T ss_dssp -CCCEEEEEE-STTSCHHHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 3578999999 99999999965443
No 341
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.02 E-value=0.004 Score=43.81 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 9 ~i~v~G-~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILG-LDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 578999 9999999996665443
No 342
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.02 E-value=0.0028 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 18 ki~ivG-~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLG-LDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEE-STTSSHHHHHHHHCCS
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 578999 9999999996555443
No 343
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.01 E-value=0.0038 Score=45.93 Aligned_cols=22 Identities=23% Similarity=-0.038 Sum_probs=17.8
Q ss_pred CeEEeecCCCCChHHHHHHHHHh
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..+.+.| |+|+|||||+..+..
T Consensus 55 ~~~~l~G-~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHG-SFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEEC-STTSSHHHHHHHHHH
T ss_pred CeEEEEC-CCCCCHHHHHHHHHH
Confidence 6788898 999999999655443
No 344
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.00 E-value=0.0032 Score=48.40 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=16.8
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
..+|.++++.| ++||||||++..+
T Consensus 22 m~~g~~I~~eG-~~GsGKsT~~~~l 45 (227)
T 3v9p_A 22 MARGKFITFEG-IDGAGKTTHLQWF 45 (227)
T ss_dssp -CCCCEEEEEC-CC---CHHHHHHH
T ss_pred ccCCeEEEEEC-CCCCCHHHHHHHH
Confidence 45789999999 9999999996444
No 345
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.99 E-value=0.0041 Score=44.03 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=17.5
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| +.|+|||||+.++...
T Consensus 16 ~i~v~G-~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLG-EQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHcC
Confidence 478999 9999999996665543
No 346
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.99 E-value=0.0044 Score=43.97 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=17.5
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 8 ki~v~G-~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLG-DGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHGG
T ss_pred EEEEEC-cCCCCHHHHHHHHHhC
Confidence 478999 9999999996665543
No 347
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.98 E-value=0.0042 Score=44.52 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=18.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 13 ki~v~G-~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALG-DSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHhcCC
Confidence 478999 99999999966655433
No 348
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.98 E-value=0.0039 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=18.6
Q ss_pred CeEEeecCCCCChHHHHHHHHHhc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
-.++++| ++|+|||||+.+++..
T Consensus 31 ~~i~i~G-~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMG-AIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEE-CTTSCHHHHHHHHHHH
T ss_pred eEEEEEc-CCCCCHHHHHHHHHHH
Confidence 3688999 9999999997666554
No 349
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.98 E-value=0.0043 Score=44.67 Aligned_cols=22 Identities=18% Similarity=-0.003 Sum_probs=17.9
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| +.|+|||||+.+++..
T Consensus 9 ki~v~G-~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLG-ESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 478999 9999999997666554
No 350
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.97 E-value=0.004 Score=43.59 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.4
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 2 ki~~~G-~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVG-LDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHHcC
Confidence 368999 9999999996665443
No 351
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.97 E-value=0.0038 Score=43.82 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=16.2
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| ++|+|||||+.++.
T Consensus 4 ki~~vG-~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLG-APGVGKSALARIFG 23 (166)
T ss_dssp EEEEEE-STTSSHHHHHHHHC
T ss_pred EEEEEC-CCCCCHHHHHHHHc
Confidence 478999 99999999965543
No 352
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.97 E-value=0.0048 Score=47.74 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=21.2
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++.-+.|.| |+|+||||++..+...+
T Consensus 49 ~~~~~~ll~G-~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYG-PPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEES-SSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEC-CCCCcHHHHHHHHHHHh
Confidence 5667788999 99999999976655443
No 353
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.97 E-value=0.0041 Score=50.24 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=19.6
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
...++|+| |+|||||||+..+.-.+
T Consensus 10 ~~~i~i~G-ptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMG-PTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEEC-CTTSCHHHHHHHHHHHS
T ss_pred CcEEEEEC-CCccCHHHHHHHHHHhC
Confidence 35788899 99999999987665443
No 354
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.96 E-value=0.0032 Score=44.64 Aligned_cols=21 Identities=19% Similarity=0.059 Sum_probs=16.9
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+.++..
T Consensus 11 ~i~v~G-~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIG-DSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEC-CTTSCHHHHHHHHCS
T ss_pred EEEEEC-CCCCCHHHHHHHHhc
Confidence 478999 999999999655543
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.96 E-value=0.0044 Score=44.31 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=17.9
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 6 ki~v~G-~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVG-ADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHSS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhCC
Confidence 478999 99999999966655433
No 356
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.95 E-value=0.0036 Score=44.90 Aligned_cols=22 Identities=14% Similarity=-0.167 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 3 ki~v~G-~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAG-RSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEE-BTTSSHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHhCc
Confidence 468999 9999999996665544
No 357
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.93 E-value=0.0044 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=19.0
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+|.++++-| ++||||||.+..+.
T Consensus 2 ~g~~i~~eG-~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 2 RSKYIVIEG-LEGAGKTTARNVVV 24 (213)
T ss_dssp CCCEEEEEE-CTTSCHHHHHHHHH
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHH
Confidence 478999999 99999999964443
No 358
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.93 E-value=0.0045 Score=44.63 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=17.9
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 23 ki~vvG-~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVG-AGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-cCCCCHHHHHHHHHcC
Confidence 478999 9999999997666544
No 359
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.93 E-value=0.004 Score=51.73 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=21.7
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+..|..++++| +||+|||||+.+ +.+.
T Consensus 19 i~~~~kvgIVG-~pnvGKSTL~n~-Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVG-LPNVGKSTFFNV-LTNS 45 (396)
T ss_dssp SSSCCCEEEEC-CSSSSHHHHHHH-HHC-
T ss_pred ccCCCEEEEEC-CCCCCHHHHHHH-HHCC
Confidence 78889999999 999999999544 4443
No 360
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.93 E-value=0.0041 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=18.7
Q ss_pred CeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
..+.++| |+|+||||++..+...+
T Consensus 48 ~~~ll~G-~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLG-PTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEES-CSSSSHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCcCHHHHHHHHHHHH
Confidence 5788999 99999999976554433
No 361
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.91 E-value=0.0042 Score=46.87 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=16.3
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
++.++| |+||||+|.+..+.
T Consensus 2 ~Iil~G-pPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLG-PPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEEC-STTSSHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 467899 99999999975553
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.91 E-value=0.0047 Score=44.02 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 20 ki~v~G-~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVG-SGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHhhC
Confidence 478999 9999999996665543
No 363
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.91 E-value=0.0022 Score=45.87 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=17.4
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.=.++++| ++|+|||||+.++.
T Consensus 18 ~~~i~v~G-~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILG-LDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEE-ETTSSHHHHHHHTC
T ss_pred ccEEEEEC-CCCCCHHHHHHHHh
Confidence 34588999 99999999965544
No 364
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.91 E-value=0.0047 Score=44.75 Aligned_cols=22 Identities=18% Similarity=-0.029 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 27 ki~v~G-~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIG-ESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEES-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-cCCCCHHHHHHHHhcC
Confidence 478999 9999999996555543
No 365
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0048 Score=43.86 Aligned_cols=23 Identities=17% Similarity=0.007 Sum_probs=18.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 12 ~i~v~G-~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVG-DSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-cCCCCHHHHHHHHHhCC
Confidence 478999 99999999966655443
No 366
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.89 E-value=0.004 Score=50.54 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=20.7
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+++| ++-|.| |+|+|||||++.++..
T Consensus 26 l~~G-iteI~G-~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 26 MQSG-LLILAG-PSKSFKSNFGLTMVSS 51 (333)
T ss_dssp BCSE-EEEEEE-SSSSSHHHHHHHHHHH
T ss_pred CcCC-eEEEEC-CCCCCHHHHHHHHHHH
Confidence 7788 887887 9999999997655433
No 367
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.89 E-value=0.0051 Score=46.89 Aligned_cols=27 Identities=22% Similarity=0.099 Sum_probs=21.4
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+|.++++-| ++||||||++..+...+
T Consensus 3 ~~g~~i~~eG-~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEG-LDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEE-CSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHh
Confidence 4689999999 99999999965554433
No 368
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.89 E-value=0.0052 Score=45.45 Aligned_cols=23 Identities=13% Similarity=-0.133 Sum_probs=18.4
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++....
T Consensus 14 ~i~~~G-~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAG-PQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSS
T ss_pred EEEEEC-CCCCCHHHHHHHHhcCC
Confidence 578999 99999999976665544
No 369
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.88 E-value=0.004 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=19.1
Q ss_pred CeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
-.++++| .+|+|||||+.+++...
T Consensus 39 ~~i~ivG-~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMG-AIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEE-STTSSHHHHHHHHHHHH
T ss_pred eEEEEEc-CCCCCHHHHHHHHHHHh
Confidence 3578999 99999999976666543
No 370
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.87 E-value=0.0049 Score=44.02 Aligned_cols=23 Identities=4% Similarity=0.044 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++..+-
T Consensus 8 ki~~~G-~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILG-YRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHSS
T ss_pred EEEEEC-cCCCCHHHHHHHHHcCC
Confidence 478999 99999999976665443
No 371
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.87 E-value=0.0051 Score=51.68 Aligned_cols=36 Identities=17% Similarity=-0.040 Sum_probs=28.9
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.+.|+.+.-- +.+|+++.|.| ++|+|||||++.+..
T Consensus 184 ~~~LD~~lgG-l~~G~liiIaG-~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYG-YKRRNFVLIAA-RPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSS-BCSSCEEEEEE-CSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCC-CCCCcEEEEEe-CCCCChHHHHHHHHH
Confidence 4556666656 89999999999 999999999766543
No 372
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.86 E-value=0.0051 Score=43.48 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=18.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| +.|+|||||+.++....
T Consensus 17 ~i~v~G-~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIG-DMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHHcCC
Confidence 478999 99999999966655443
No 373
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.86 E-value=0.0052 Score=43.71 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 14 ki~v~G-~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLG-DVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEC-CTTSCHHHHHHHHHHC
T ss_pred EEEEEC-cCCCCHHHHHHHHHcC
Confidence 478999 9999999996665544
No 374
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.84 E-value=0.0051 Score=44.35 Aligned_cols=22 Identities=14% Similarity=-0.087 Sum_probs=17.8
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 9 ki~v~G-~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVG-DSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 468999 9999999997666554
No 375
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.84 E-value=0.0051 Score=44.01 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 12 ki~v~G-~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIG-NAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHcC
Confidence 478999 9999999996665544
No 376
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.82 E-value=0.0046 Score=49.04 Aligned_cols=25 Identities=16% Similarity=-0.202 Sum_probs=19.3
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+..+.+.| |+|+||||++..+...+
T Consensus 37 ~~~lll~G-~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYG-SVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEEC-SSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEC-CCCCcHHHHHHHHHHHH
Confidence 45788999 99999999976554433
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.82 E-value=0.0054 Score=43.86 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 20 ki~v~G-~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVG-DGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 468999 9999999997665544
No 378
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.81 E-value=0.0051 Score=47.16 Aligned_cols=24 Identities=17% Similarity=-0.187 Sum_probs=19.0
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+|.++.+.| +.|+||||+++.++
T Consensus 10 ~~G~i~litG-~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 10 KIGWIEFITG-PMFAGKTAELIRRL 33 (223)
T ss_dssp -CCEEEEEEC-STTSCHHHHHHHHH
T ss_pred CCcEEEEEEC-CCCCcHHHHHHHHH
Confidence 5688888888 99999999965543
No 379
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.80 E-value=0.0054 Score=44.62 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=17.5
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 16 ki~v~G-~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVG-SGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 478999 9999999996655544
No 380
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.80 E-value=0.0056 Score=43.66 Aligned_cols=22 Identities=9% Similarity=-0.068 Sum_probs=17.5
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 7 ~i~~~G-~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVG-DGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHcC
Confidence 478999 9999999996555543
No 381
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.79 E-value=0.006 Score=44.89 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=23.4
Q ss_pred cccCeeeEeeCCCC---eEEeecCCCCChHHHHHHHHHh
Q psy17517 21 YLQGVNYNCVAPGK---RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 21 ~l~~vsl~~i~~Ge---~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+++.+.-. +..|+ .+.|.| |+|+||||++..+..
T Consensus 31 ~~~~l~~~-l~~~~~~~~~ll~G-~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 31 VLTALANG-LSLGRIHHAYLFSG-TRGVGKTSIARLLAK 67 (250)
T ss_dssp HHHHHHHH-HHHTCCCSEEEEEC-STTSCHHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCCCeEEEEEC-CCCCCHHHHHHHHHH
Confidence 44444444 55555 788999 999999999655543
No 382
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.79 E-value=0.028 Score=55.19 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.2
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+++|+.+.+.| |+|+|||||++.++
T Consensus 1424 i~~g~~vll~G-ppGtGKT~LA~ala 1448 (2050)
T 3cmu_A 1424 LPMGRIVEIYG-PESSGKTTLTLQVI 1448 (2050)
T ss_dssp EETTSEEEEEC-CTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 88999999999 99999999976543
No 383
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.79 E-value=0.0057 Score=44.64 Aligned_cols=23 Identities=17% Similarity=-0.048 Sum_probs=18.2
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 10 ki~v~G-~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILG-DSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHSC
T ss_pred EEEEEC-cCCCCHHHHHHHHHcCC
Confidence 478999 99999999966655443
No 384
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.79 E-value=0.005 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=18.5
Q ss_pred CeEEeecCCCCChHHHHHHHHHhc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.+++|+| |+|||||||+..+...
T Consensus 3 ~~i~i~G-ptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAG-TTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEE-CSSSSHHHHHHHHHHH
T ss_pred cEEEEEC-cchhhHHHHHHHHHHH
Confidence 4678999 9999999997666543
No 385
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.76 E-value=0.0055 Score=46.63 Aligned_cols=23 Identities=13% Similarity=-0.106 Sum_probs=18.5
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
|.++++.| +.||||||++..+.-
T Consensus 2 ~~~i~~~G-~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEG-NIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEE-CTTSSHHHHHHHHHH
T ss_pred CeEEEEEc-CCCCCHHHHHHHHHH
Confidence 56788999 999999999655443
No 386
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.74 E-value=0.0061 Score=43.36 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 10 ki~v~G-~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVG-DGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 578999 9999999996655544
No 387
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.73 E-value=0.0054 Score=45.68 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=17.1
Q ss_pred CCeEEeecCCCCChHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
+-+++|+| ++||||||++..+
T Consensus 3 ~~~i~i~G-~~gsGkst~~~~l 23 (219)
T 2h92_A 3 AINIALDG-PAAAGKSTIAKRV 23 (219)
T ss_dssp CCCEEEEC-CTTSSHHHHHHHH
T ss_pred ceEEEEEC-CCCCCHHHHHHHH
Confidence 35688999 9999999996544
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.0061 Score=44.30 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| +.|+|||||+.++...-
T Consensus 25 ki~vvG-~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLG-DTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEE-CTTSSHHHHHHHHHHCC
T ss_pred EEEEEC-cCCCCHHHHHHHHhcCC
Confidence 478999 99999999966655443
No 389
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.73 E-value=0.0051 Score=49.59 Aligned_cols=34 Identities=29% Similarity=0.226 Sum_probs=25.4
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..+.+.-+. + .|.-+.+.| +||+||||+++.++.
T Consensus 136 ~~~H~~~v~-~-~g~gvli~G-~sG~GKStlal~l~~ 169 (312)
T 1knx_A 136 AQIHGVLLE-V-FGVGVLLTG-RSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEEEE-E-TTEEEEEEE-SSSSSHHHHHHHHHT
T ss_pred ceeEEEEEE-E-CCEEEEEEc-CCCCCHHHHHHHHHH
Confidence 456665555 4 467789999 999999999766653
No 390
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.73 E-value=0.0061 Score=43.97 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 18 ki~v~G-~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIG-DSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-cCCCCHHHHHHHHHcCC
Confidence 478999 99999999966655443
No 391
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.71 E-value=0.0064 Score=43.91 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 22 ki~v~G-~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIG-DSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHcC
Confidence 478999 9999999997665544
No 392
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.71 E-value=0.0058 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=19.8
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
-.+|.++++.| ++||||||++..+.
T Consensus 18 ~~~~~~i~~~G-~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 18 GPGSMFITFEG-IDGSGKTTQSHLLA 42 (223)
T ss_dssp -CCCEEEEEEC-STTSSHHHHHHHHH
T ss_pred CCCCeEEEEEC-CCCCCHHHHHHHHH
Confidence 35688999999 99999999964443
No 393
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.70 E-value=0.0057 Score=46.88 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++++.
T Consensus 24 ~I~lvG-~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVG-KTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEE-CTTSCHHHHHHHHHTS
T ss_pred EEEEEC-CCCCCHHHHHHHHhCC
Confidence 578999 9999999996655543
No 394
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.70 E-value=0.0057 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.8
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| .+|+|||||+..+++
T Consensus 23 ~I~lvG-~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 23 RLILVG-RTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEES-STTSSHHHHHHHHHT
T ss_pred EEEEEC-CCCCcHHHHHHHHhC
Confidence 478999 999999999555443
No 395
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.70 E-value=0.0049 Score=50.06 Aligned_cols=26 Identities=15% Similarity=-0.180 Sum_probs=21.5
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+.+|..+.|.| |+|+|||||++.+..
T Consensus 120 i~~gsviLI~G-pPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 120 RYASGMVIVTG-KGNSGKTPLVHALGE 145 (331)
T ss_dssp EEESEEEEEEC-SCSSSHHHHHHHHHH
T ss_pred CCCCcEEEEEc-CCCCCHHHHHHHHHH
Confidence 77788888888 999999999766543
No 396
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.69 E-value=0.0065 Score=43.89 Aligned_cols=23 Identities=13% Similarity=-0.106 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 24 ki~vvG-~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIG-NSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHHcCC
Confidence 478999 99999999966655443
No 397
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.69 E-value=0.0057 Score=48.63 Aligned_cols=22 Identities=14% Similarity=-0.132 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+++++| ++|+|||||+.++++.
T Consensus 9 ~V~ivG-~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVG-KPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEC-STTSSHHHHHHHHHTS
T ss_pred EEEEEC-CCCCCHHHHHHHHhCC
Confidence 689999 9999999996665543
No 398
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.67 E-value=0.0057 Score=43.94 Aligned_cols=25 Identities=16% Similarity=-0.033 Sum_probs=18.8
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.=.++++| ++|+|||||+.++...-
T Consensus 18 ~~~i~v~G-~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLG-LDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEEC-STTSSHHHHHHHHTTCC
T ss_pred eeEEEEEC-CCCCCHHHHHHHHhcCC
Confidence 34578999 99999999966555443
No 399
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0066 Score=43.90 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=17.8
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 10 ki~vvG-~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFG-AGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEE-CTTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCcHHHHHHHHHcC
Confidence 478999 9999999996666543
No 400
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0064 Score=45.01 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=18.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++....
T Consensus 28 ki~lvG-~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIG-NAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHSS
T ss_pred EEEEEC-cCCCCHHHHHHHHHhCC
Confidence 578999 99999999976665543
No 401
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0063 Score=43.86 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++..+
T Consensus 18 ~i~v~G-~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVG-LDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEE-STTSSHHHHHHHHHTT
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 578999 9999999996665533
No 402
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.0031 Score=50.06 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=27.0
Q ss_pred CCcccCeeeEeeCCC--CeEEeecCCCCChHHHHHHHHHhc
Q psy17517 19 EPYLQGVNYNCVAPG--KRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 19 ~~~l~~vsl~~i~~G--e~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
..+++.+.-. +..| ..+.+.| |+|+||||++..+...
T Consensus 43 ~~~~~~l~~~-l~~~~~~~~ll~G-~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 43 DHAVTVLKKT-LKSANLPHMLFYG-PPGTGKTSTILALTKE 81 (353)
T ss_dssp CTTHHHHHHH-TTCTTCCCEEEEC-STTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhcCCCCEEEEEC-CCCCCHHHHHHHHHHH
Confidence 3466677666 7776 4488999 9999999997555443
No 403
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.66 E-value=0.0065 Score=44.34 Aligned_cols=23 Identities=13% Similarity=-0.125 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| +.|+|||||+.++...-
T Consensus 10 ki~v~G-~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIG-NSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEC-STTSSHHHHHHHHHTCC
T ss_pred EEEEEC-CCCCCHHHHHHHHhcCC
Confidence 478999 99999999966655443
No 404
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.66 E-value=0.0054 Score=43.65 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=18.4
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 9 ki~~vG-~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLG-DARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEC-CGGGCHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHHhCC
Confidence 478999 99999999976665543
No 405
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.65 E-value=0.0023 Score=49.20 Aligned_cols=21 Identities=24% Similarity=0.064 Sum_probs=16.8
Q ss_pred EEeecCCCCChHHHHHHHHHhc
Q psy17517 36 FQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 36 ~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+.+.| |+|+||||++..+...
T Consensus 47 vll~G-~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVG-PPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBC-SSCSSHHHHHHHHHHH
T ss_pred EEEEC-CCCCcHHHHHHHHHHH
Confidence 67888 9999999997665443
No 406
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.65 E-value=0.006 Score=47.88 Aligned_cols=21 Identities=10% Similarity=-0.140 Sum_probs=17.0
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+.++.+
T Consensus 5 kI~lvG-~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 5 EIALIG-NPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHC
T ss_pred EEEEEC-CCCCCHHHHHHHHHC
Confidence 578999 999999999655443
No 407
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.65 E-value=0.0066 Score=44.42 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=18.4
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 26 ki~vvG-~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILG-YRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCcCHHHHHHHHHhCC
Confidence 578999 99999999976665543
No 408
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.64 E-value=0.0078 Score=45.74 Aligned_cols=26 Identities=23% Similarity=0.043 Sum_probs=19.5
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
....-+.+.| |+|+||||++..+...
T Consensus 37 ~~~~~vll~G-~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLG-PPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEES-CTTSSHHHHHHHHHHH
T ss_pred CCCceEEEEC-CCCCCHHHHHHHHHHH
Confidence 4445578899 9999999997665443
No 409
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.63 E-value=0.007 Score=43.85 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=17.9
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 23 ki~v~G-~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIG-DTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEES-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-cCCCCHHHHHHHHhcCC
Confidence 468999 99999999966655443
No 410
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.63 E-value=0.0069 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=18.4
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++....
T Consensus 9 ki~vvG-~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVG-LCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHhCCC
Confidence 578999 99999999976665443
No 411
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.62 E-value=0.0073 Score=43.82 Aligned_cols=23 Identities=13% Similarity=0.171 Sum_probs=18.3
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 23 ki~vvG-~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILG-RRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHSS
T ss_pred EEEEEC-CCCCcHHHHHHHHHhCC
Confidence 478999 99999999966665543
No 412
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.61 E-value=0.0045 Score=51.90 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=22.2
Q ss_pred eEeeCCC--CeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 27 YNCVAPG--KRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 27 l~~i~~G--e~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
|. +.++ .+++++| ++|+||||++.++...+
T Consensus 92 ~~-~~~~~~~vI~ivG-~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 92 LE-LNPKKQNVILLVG-IQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CC-CCSSSCCCEEEEC-CSSSSTTHHHHHHHHHH
T ss_pred cc-ccCCCCeEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 44 4434 5899999 99999999976655443
No 413
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.61 E-value=0.0073 Score=45.10 Aligned_cols=24 Identities=8% Similarity=-0.156 Sum_probs=20.0
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+|.+..+.| +.||||||.++.++
T Consensus 6 ~~g~i~v~~G-~mgsGKTT~ll~~a 29 (191)
T 1xx6_A 6 DHGWVEVIVG-PMYSGKSEELIRRI 29 (191)
T ss_dssp TCCEEEEEEC-STTSSHHHHHHHHH
T ss_pred CCCEEEEEEC-CCCCcHHHHHHHHH
Confidence 5688999999 99999999965543
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0065 Score=44.03 Aligned_cols=23 Identities=13% Similarity=-0.093 Sum_probs=18.3
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 25 ki~v~G-~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIG-NSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHT
T ss_pred EEEEEC-CCCcCHHHHHHHHhcCC
Confidence 478999 99999999976655443
No 415
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.0075 Score=43.87 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=18.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 30 ki~v~G-~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFG-RAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 578999 9999999997666544
No 416
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.58 E-value=0.0074 Score=43.74 Aligned_cols=23 Identities=17% Similarity=-0.029 Sum_probs=18.4
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 25 ki~~vG-~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVG-DGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-cCCCCHHHHHHHHhcCC
Confidence 478999 99999999976665543
No 417
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.0076 Score=43.37 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=18.3
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| +.|+|||||+.++...-
T Consensus 17 ~i~v~G-~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIG-ESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHHcCC
Confidence 578999 99999999976665443
No 418
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.57 E-value=0.0046 Score=45.81 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=18.1
Q ss_pred CeEEeecCCCCChHHHHHHHHHhc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
-.++++| ++|+|||||+.++...
T Consensus 30 ~~i~v~G-~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAG-RSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEE-SCHHHHHHHHHHHTTC
T ss_pred CEEEEEc-CCCCCHHHHHHHHhCC
Confidence 3688999 9999999996555443
No 419
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.57 E-value=0.0067 Score=48.25 Aligned_cols=23 Identities=13% Similarity=-0.114 Sum_probs=18.5
Q ss_pred CeEEeecCCCCChHHHHHHHHHhc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
-+++++| .+|+|||||+.++++.
T Consensus 11 g~v~ivG-~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVG-KPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEC-STTSSHHHHHHHHHTS
T ss_pred CEEEEEC-CCCCcHHHHHHHHhCC
Confidence 4789999 9999999996555543
No 420
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.56 E-value=0.0077 Score=43.59 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=18.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| +.|+|||||+.++...-
T Consensus 24 ki~v~G-~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVG-LQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHHcCC
Confidence 478999 99999999976665443
No 421
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.56 E-value=0.0074 Score=44.18 Aligned_cols=22 Identities=18% Similarity=0.073 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 10 ki~v~G-~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIG-NSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHC
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 478999 9999999996665543
No 422
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.56 E-value=0.0036 Score=56.34 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=25.2
Q ss_pred eeeEeeCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 25 VNYNCVAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 25 vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++. +.+++.+.++| |+|+|||||++.+...
T Consensus 504 ~~~~-~~~~~~vLL~G-ppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 504 LKFG-MTPSKGVLFYG-PPGCGKTLLAKAIANE 534 (806)
T ss_dssp TCCC-CCCCCCCCCBC-CTTSSHHHHHHHHHHH
T ss_pred HhcC-CCCCceeEEEC-CCCCCHHHHHHHHHHH
Confidence 3667 78999999999 9999999997655433
No 423
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.56 E-value=0.0075 Score=44.12 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.7
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| .+|+|||||+.++.
T Consensus 8 kv~lvG-~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 8 RVVLIG-EQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEC-STTSSHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHh
Confidence 478999 99999999965554
No 424
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.53 E-value=0.007 Score=51.40 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=25.8
Q ss_pred CcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 20 PYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 20 ~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.+++.+ +. +-+|+..+|+| ++|+|||||+..++
T Consensus 140 r~ID~L-~p-i~kGq~~~i~G-~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 140 KVVDLL-AP-YIKGGKIGLFG-GAGVGKTVLIQELI 172 (473)
T ss_dssp HHHHHH-SC-EETTCEEEEEC-CSSSCHHHHHHHHH
T ss_pred hHHHHH-hh-hccCCEEEEEC-CCCCCccHHHHHHH
Confidence 355555 55 78899999999 99999999964443
No 425
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.53 E-value=0.0042 Score=47.95 Aligned_cols=25 Identities=12% Similarity=-0.140 Sum_probs=19.2
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
..++.++++.| +.||||||++..+.
T Consensus 21 ~~~~~~I~ieG-~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 21 GTRIKKISIEG-NIAAGKSTFVNILK 45 (263)
T ss_dssp --CCEEEEEEC-STTSSHHHHHTTTG
T ss_pred ccCceEEEEEC-CCCCCHHHHHHHHH
Confidence 46778899999 99999999964443
No 426
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.52 E-value=0.0083 Score=42.14 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=18.5
Q ss_pred CCCCeEEeecCCCCChHHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
..+.-+.+.| |+|+|||+++..+
T Consensus 22 ~~~~~vll~G-~~GtGKt~lA~~i 44 (145)
T 3n70_A 22 ETDIAVWLYG-APGTGRMTGARYL 44 (145)
T ss_dssp TCCSCEEEES-STTSSHHHHHHHH
T ss_pred CCCCCEEEEC-CCCCCHHHHHHHH
Confidence 4556688898 9999999997554
No 427
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.51 E-value=0.0058 Score=44.86 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=15.8
Q ss_pred eEEeecCCCCChHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l 54 (163)
.++++| ++|+|||||+.++
T Consensus 25 ki~vvG-~~~vGKSsLi~~l 43 (195)
T 3cbq_A 25 KVMLVG-ESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEC-STTSSHHHHHHHT
T ss_pred EEEEEC-CCCCCHHHHHHHH
Confidence 478999 9999999995444
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.50 E-value=0.0066 Score=43.62 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 23 ~i~v~G-~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVG-LDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEE-ETTSSHHHHHHHHHTT
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 477999 9999999996665543
No 429
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.50 E-value=0.0063 Score=44.02 Aligned_cols=22 Identities=14% Similarity=-0.075 Sum_probs=17.5
Q ss_pred CeEEeecCCCCChHHHHHHHHHh
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
-.++++| ++|+|||||+.++..
T Consensus 18 ~ki~v~G-~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCG-LDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEC-CTTSCHHHHHHHHSC
T ss_pred cEEEEEC-CCCCCHHHHHHHHhc
Confidence 3578999 999999999655543
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.49 E-value=0.0083 Score=43.81 Aligned_cols=24 Identities=8% Similarity=-0.162 Sum_probs=18.6
Q ss_pred CeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
=.++++| +.|+|||||+.++...-
T Consensus 29 ~ki~v~G-~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAG-DAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEES-STTSSHHHHHHHHHHCC
T ss_pred eEEEEEC-cCCCCHHHHHHHHHhCC
Confidence 3578999 99999999966655443
No 431
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.49 E-value=0.0073 Score=44.28 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=17.1
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+.++..
T Consensus 27 ki~v~G-~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIG-SAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEE-STTSSHHHHHHHHHC
T ss_pred EEEEEC-cCCCCHHHHHHHHHh
Confidence 578999 999999999655543
No 432
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.48 E-value=0.0055 Score=51.86 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=28.7
Q ss_pred CCcccCeeeEeeCCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 19 ~~~l~~vsl~~i~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.+.|+.+.-- +.+|+++.|.| ++|+|||||++.++.
T Consensus 229 ~~~LD~~lgG-l~~G~l~li~G-~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 229 CTGINDKTLG-ARGGEVIMVTS-GSGMVMSTFVRQQAL 264 (503)
T ss_dssp CTTHHHHHCC-CCTTCEEEEEE-SSCHHHHHHHHHHHH
T ss_pred hhhhhHhhcc-cCCCeEEEEee-cCCCCchHHHHHHHH
Confidence 4456666556 89999999999 999999999766543
No 433
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.47 E-value=0.0083 Score=47.89 Aligned_cols=25 Identities=24% Similarity=0.114 Sum_probs=19.9
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..+..+.|.| |+|+||||++..+..
T Consensus 42 ~~~~~vll~G-~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYG-LTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECB-CTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEC-CCCCCHHHHHHHHHH
Confidence 4567889999 999999999655443
No 434
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.46 E-value=0.0087 Score=43.82 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 22 ~i~v~G-~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIG-DSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHC
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 578999 9999999996555543
No 435
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.45 E-value=0.0085 Score=44.41 Aligned_cols=22 Identities=14% Similarity=-0.087 Sum_probs=18.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 30 ki~vvG-~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVG-DSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 578999 9999999997665544
No 436
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.43 E-value=0.0073 Score=50.91 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=20.5
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
++.++.++| ++|+||||++.++...+
T Consensus 99 ~p~vIlivG-~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVG-IQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEEC-CTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEC-cCCCCHHHHHHHHHHHH
Confidence 467889999 99999999976655444
No 437
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.40 E-value=0.0058 Score=44.20 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=17.3
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 23 ki~v~G-~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLG-LDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEE-CTTSSHHHHHHHTSCG
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 578999 9999999996554433
No 438
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0095 Score=43.84 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=17.9
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 27 ki~vvG-~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVG-DGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEE-CTTSSHHHHHHHHHHS
T ss_pred EEEEEC-cCCCCHHHHHHHHhcC
Confidence 688999 9999999996555543
No 439
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.36 E-value=0.0082 Score=45.02 Aligned_cols=22 Identities=9% Similarity=-0.218 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 31 kI~vvG-~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSG-APNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEC-STTSSHHHHHHHHTTT
T ss_pred EEEEEC-CCCCCHHHHHHHHhCC
Confidence 578999 9999999996555443
No 440
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.35 E-value=0.0089 Score=43.51 Aligned_cols=23 Identities=9% Similarity=-0.107 Sum_probs=17.5
Q ss_pred CeEEeecCCCCChHHHHHHHHHhc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
=.++++| ++|+|||||+.++...
T Consensus 21 ~ki~~~G-~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVG-DGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEEC-STTSSHHHHHHHHHC-
T ss_pred eEEEEEC-CCCCCHHHHHHHHHhC
Confidence 3578999 9999999996555433
No 441
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.34 E-value=0.0087 Score=42.99 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=16.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+ +.+.+
T Consensus 16 ki~vvG-~~~~GKssL~-~~l~~ 36 (198)
T 3t1o_A 16 KIVYYG-PGLSGKTTNL-KWIYS 36 (198)
T ss_dssp EEEEEC-STTSSHHHHH-HHHHH
T ss_pred EEEEEC-CCCCCHHHHH-HHHHh
Confidence 378999 9999999995 55543
No 442
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.34 E-value=0.0086 Score=44.48 Aligned_cols=21 Identities=19% Similarity=-0.054 Sum_probs=17.0
Q ss_pred EEeecCCCCChHHHHHHHHHhc
Q psy17517 36 FQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 36 ~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+.|+| ++||||||++..+...
T Consensus 2 ilV~G-g~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTG-GARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEE-CTTSSHHHHHHHHHCS
T ss_pred EEEEC-CCCCcHHHHHHHHHhc
Confidence 56888 9999999998766543
No 443
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.33 E-value=0.0093 Score=44.00 Aligned_cols=22 Identities=18% Similarity=0.022 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| +.|+|||||+.++...
T Consensus 27 ki~vvG-~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALG-DSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEES-CTTSSHHHHHHHHHCS
T ss_pred EEEEEC-cCCCCHHHHHHHHhcC
Confidence 478999 9999999996555543
No 444
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.33 E-value=0.0089 Score=44.34 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=17.2
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+.++..
T Consensus 36 ki~vvG-~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVG-DGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEE-CTTSSHHHHHHHHHC
T ss_pred EEEEEC-cCCCCHHHHHHHHHc
Confidence 478999 999999999655543
No 445
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.33 E-value=0.0073 Score=43.92 Aligned_cols=20 Identities=15% Similarity=-0.017 Sum_probs=16.3
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| ++|+|||||+.++.
T Consensus 28 ki~vvG-~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 28 QVIIIG-SRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEC-STTSSHHHHHHHHC
T ss_pred EEEEEC-CCCCCHHHHHHHHh
Confidence 378999 99999999965554
No 446
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.31 E-value=0.011 Score=46.28 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=19.1
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
++.-+.+.| |+|+||||++..+...+
T Consensus 66 ~~~~vll~G-~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTG-NPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEE-CTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEC-CCCCCHHHHHHHHHHHH
Confidence 344578899 99999999976554333
No 447
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.011 Score=42.83 Aligned_cols=22 Identities=9% Similarity=-0.080 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 20 ki~v~G-~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVG-DGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEE-CTTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHhcC
Confidence 578999 9999999997666554
No 448
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.29 E-value=0.0077 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=17.2
Q ss_pred CeEEeecCCCCChHHHHHHHHH
Q psy17517 34 KRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~ 55 (163)
=.++++| ++|+|||||+.++.
T Consensus 30 ~ki~v~G-~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 30 MRILMVG-LDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEEE-STTSSHHHHHHHHC
T ss_pred cEEEEEC-CCCCCHHHHHHHHH
Confidence 4588999 99999999965554
No 449
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.26 E-value=0.011 Score=43.58 Aligned_cols=23 Identities=9% Similarity=-0.096 Sum_probs=18.1
Q ss_pred CeEEeecCCCCChHHHHHHHHHhc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
=.++++| ++|+|||||+.++...
T Consensus 31 ~ki~vvG-~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVG-DGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEE-STTSSHHHHHHHHHHS
T ss_pred EEEEEEC-cCCCCHHHHHHHHHhC
Confidence 3578999 9999999996555543
No 450
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.25 E-value=0.0097 Score=43.31 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=16.8
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.+.+.| |.|+||||++..+..
T Consensus 40 ~~ll~G-~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSG-PPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEEC-STTSSHHHHHHHHHH
T ss_pred eEEEEC-CCCCCHHHHHHHHHH
Confidence 388899 999999999755543
No 451
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.24 E-value=0.011 Score=43.26 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=17.5
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 27 ki~vvG-~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVG-DGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 478999 9999999996555543
No 452
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.23 E-value=0.0063 Score=43.49 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=8.8
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| ++|+|||||+.++.
T Consensus 10 ki~v~G-~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 10 KLLLIG-DSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEC-CCCC----------
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 478999 99999999965544
No 453
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.21 E-value=0.012 Score=43.28 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=17.7
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| +.|+|||||+.++...
T Consensus 31 ki~vvG-~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVG-DASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEE-CTTSSHHHHHHHHHHS
T ss_pred EEEEEC-cCCCCHHHHHHHHhhC
Confidence 478999 9999999997665544
No 454
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.20 E-value=0.011 Score=45.91 Aligned_cols=22 Identities=23% Similarity=-0.082 Sum_probs=17.5
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| .+|||||||+.++.+.
T Consensus 3 kI~lvG-~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIG-NPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEE-STTSSHHHHHHHHHTT
T ss_pred EEEEEC-CCCCCHHHHHHHHHCC
Confidence 578999 9999999996555443
No 455
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.17 E-value=0.0099 Score=46.21 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=15.0
Q ss_pred EEeecCCCCChHHHHHHHH
Q psy17517 36 FQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 36 ~~lvG~~nGsGKSTl~l~l 54 (163)
++++| ++|+|||||+..+
T Consensus 11 I~vvG-~~g~GKSTLin~L 28 (274)
T 3t5d_A 11 LMVVG-ESGLGKSTLINSL 28 (274)
T ss_dssp EEEEE-CTTSSHHHHHHHH
T ss_pred EEEEC-CCCCCHHHHHHHH
Confidence 78999 9999999995443
No 456
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.14 E-value=0.011 Score=47.24 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
.+|..+.+.| |+|+||||++..+...+.
T Consensus 68 ~~~~~vLl~G-ppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAG-QPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEE-STTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHhc
Confidence 3456789999 999999999766654443
No 457
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.10 E-value=0.012 Score=45.53 Aligned_cols=21 Identities=19% Similarity=-0.127 Sum_probs=17.1
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+.++.+
T Consensus 7 kI~lvG-~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAG-CPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEC-CTTSSHHHHHHHHHT
T ss_pred EEEEEC-CCCCCHHHHHHHHHC
Confidence 478999 999999999655544
No 458
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.06 E-value=0.011 Score=49.53 Aligned_cols=23 Identities=13% Similarity=-0.236 Sum_probs=18.1
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+.-+.+.| |+|+|||||+..+..
T Consensus 130 ~~~lll~G-p~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYG-GVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEEC-SSSSSHHHHHHHHHH
T ss_pred CCeEEEEC-CCCCCHHHHHHHHHH
Confidence 35688999 999999999655443
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.06 E-value=0.013 Score=43.48 Aligned_cols=22 Identities=14% Similarity=-0.085 Sum_probs=17.9
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 29 ki~vvG-~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVG-DVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHS
T ss_pred EEEEEC-cCCCCHHHHHHHHhcC
Confidence 477999 9999999997666554
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.04 E-value=0.015 Score=46.52 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=20.6
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+..-+.+.| |+|+||||++..+...+
T Consensus 43 ~~~~~iLL~G-ppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFG-PPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEES-SSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEEC-CCCccHHHHHHHHHHHc
Confidence 3456688888 99999999976665444
No 461
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.013 Score=43.97 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.9
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| .+|+|||||+.++.
T Consensus 39 kVvlvG-~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 39 RVVLIG-EQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEC-CTTSSHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 488999 99999999966554
No 462
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.02 E-value=0.012 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=18.9
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.-+++++| +.|+|||||+.++...
T Consensus 79 ~~~I~i~G-~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITG-VPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEEC-CTTSSHHHHHHHHHHH
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHH
Confidence 34788999 9999999997665544
No 463
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.01 E-value=0.012 Score=44.15 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=18.0
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
|.++++=| +-||||||.+..+.-
T Consensus 2 ~kFI~~EG-~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEG-PEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEEC-CTTSCHHHHHHHHHH
T ss_pred CCEEEEEC-CCCCcHHHHHHHHHH
Confidence 56888888 999999998644433
No 464
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.01 E-value=0.014 Score=42.85 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++....
T Consensus 11 ki~i~G-~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVG-DGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHSC
T ss_pred EEEEEC-CCCCCHHHHHHHHhcCC
Confidence 478999 99999999966655443
No 465
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.015 Score=43.38 Aligned_cols=23 Identities=13% Similarity=-0.087 Sum_probs=18.1
Q ss_pred eEEeecCCCCChHHHHHHHHHhcc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.++++| ++|+|||||+.++...-
T Consensus 15 ki~v~G-~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIG-DSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEES-CTTSSHHHHHHHHHHCC
T ss_pred EEEEEC-cCCCCHHHHHHHHhcCC
Confidence 478999 99999999966655443
No 466
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.00 E-value=0.013 Score=46.01 Aligned_cols=22 Identities=5% Similarity=-0.056 Sum_probs=17.6
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| +.|+|||||+.++++.
T Consensus 26 ~I~vvG-~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVG-SQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEE-CSSSSHHHHHHHHHTS
T ss_pred eEEEEc-CCCCCHHHHHHHHHCC
Confidence 688999 9999999996555443
No 467
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.98 E-value=0.014 Score=45.05 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.1
Q ss_pred CeEEeecCCCCChHHHHHHHHH
Q psy17517 34 KRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~ 55 (163)
-.++++| +.||||||++..+.
T Consensus 9 ~~~~~~G-~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 9 MRLILLG-APGAGKGTQANFIK 29 (230)
T ss_dssp CEEEEEC-CTTSCHHHHHHHHH
T ss_pred cceeeEC-CCCCCHHHHHHHHH
Confidence 3578999 99999999975543
No 468
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.97 E-value=0.012 Score=50.50 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=21.5
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhccc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAIH 59 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l~ 59 (163)
+.|-.+.++| .+||||||++..+...+.
T Consensus 393 ~~~~~I~l~G-lsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGN-SLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECT-TCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecc-cCCCCHHHHHHHHHHHHH
Confidence 4667888999 999999999766544443
No 469
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.97 E-value=0.016 Score=44.57 Aligned_cols=28 Identities=29% Similarity=0.135 Sum_probs=21.2
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
..|+...+++++.|+||||++.++...+
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4678767777799999999976655444
No 470
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.96 E-value=0.013 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.009 Sum_probs=16.0
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| ++|+|||||+.++.
T Consensus 3 ~v~IVG-~pnvGKSTL~n~L~ 22 (368)
T 2dby_A 3 AVGIVG-LPNVGKSTLFNALT 22 (368)
T ss_dssp SEEEEC-CSSSSHHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHHh
Confidence 478999 99999999954443
No 471
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.90 E-value=0.015 Score=44.95 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=17.0
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+.++..
T Consensus 38 ~I~lvG-~~g~GKSSLin~l~~ 58 (262)
T 3def_A 38 TVLVLG-KGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEE-CTTSSHHHHHHHHHT
T ss_pred EEEEEC-CCCCCHHHHHHHHhC
Confidence 478999 999999999655544
No 472
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.88 E-value=0.014 Score=45.10 Aligned_cols=23 Identities=13% Similarity=-0.197 Sum_probs=17.8
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
..-+.+.| |+|+||||++..+..
T Consensus 64 ~~~vLl~G-~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEG-PPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEEC-STTSSHHHHHHHHHH
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHH
Confidence 34577888 999999999766543
No 473
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.88 E-value=0.016 Score=42.19 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.6
Q ss_pred eEEeecCCCCChHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l 54 (163)
.++++| ++|+|||||+..+
T Consensus 22 ki~~vG-~~~vGKTsLi~~l 40 (196)
T 3llu_A 22 RILLMG-LRRSGKSSIQKVV 40 (196)
T ss_dssp EEEEEE-STTSSHHHHHHHH
T ss_pred EEEEEC-CCCCCHHHHHHHH
Confidence 478999 9999999995433
No 474
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.88 E-value=0.017 Score=46.58 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=19.7
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
++.-+.+.| |+|+||||++..+...+
T Consensus 50 ~~~~vll~G-ppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIG-PTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEEC-CTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEC-CCCCCHHHHHHHHHHHc
Confidence 445677898 99999999976655443
No 475
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.88 E-value=0.015 Score=45.35 Aligned_cols=21 Identities=14% Similarity=-0.111 Sum_probs=17.0
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| .+|||||||+.++.+
T Consensus 5 ~I~lvG-~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 5 TIGLIG-NPNSGKTTLFNQLTG 25 (274)
T ss_dssp EEEEEE-CTTSSHHHHHHHHHT
T ss_pred EEEEEC-CCCCCHHHHHHHHhC
Confidence 478999 999999999655544
No 476
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.86 E-value=0.0069 Score=44.05 Aligned_cols=22 Identities=5% Similarity=-0.120 Sum_probs=4.0
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| ++|+|||||+.++...
T Consensus 22 ~i~v~G-~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVG-EATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC------------------
T ss_pred EEEEEC-CCCCCHHHHHHHHHhC
Confidence 578999 9999999996555443
No 477
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.85 E-value=0.017 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.030 Sum_probs=19.1
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+.-+.+.| |+|+||||++..+...+
T Consensus 50 ~~~vll~G-~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIG-PTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEEC-CTTSSHHHHHHHHHHHH
T ss_pred CceEEEEC-CCCCCHHHHHHHHHHHh
Confidence 45677888 99999999976654443
No 478
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.84 E-value=0.016 Score=44.22 Aligned_cols=27 Identities=4% Similarity=-0.031 Sum_probs=20.0
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
++....+.+.| |.|+||||++..++..
T Consensus 55 iPkkn~ili~G-PPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 55 TPKKNCLVFCG-PANTGKSYFGMSFIHF 81 (212)
T ss_dssp CTTCSEEEEES-CGGGCHHHHHHHHHHH
T ss_pred CCcccEEEEEC-CCCCCHHHHHHHHHHH
Confidence 44444678888 9999999997665443
No 479
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.82 E-value=0.018 Score=46.09 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=18.4
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+..+.|.| |+|+||||++..+..
T Consensus 45 ~~~vll~G-~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLG-LTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEE-CTTSSHHHHHHHHHH
T ss_pred CCcEEEEC-CCCCCHHHHHHHHHH
Confidence 45788999 999999999755543
No 480
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.81 E-value=0.018 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.043 Sum_probs=18.3
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
|-.++++| .+|+|||||+.++..
T Consensus 2 ~~kI~IVG-~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVG-LPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEEC-CTTSSHHHHHHHHHH
T ss_pred CCEEEEEC-CCCCCHHHHHHHHHC
Confidence 45689999 999999999655443
No 481
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.78 E-value=0.015 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=18.0
Q ss_pred CCCeEEeecCCCCChHHHHHHHH
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l 54 (163)
.|-++.+.| ++||||||++..+
T Consensus 395 ~~~~I~l~G-lsGSGKSTiA~~L 416 (573)
T 1m8p_A 395 QGFTIFLTG-YMNSGKDAIARAL 416 (573)
T ss_dssp CCEEEEEEC-STTSSHHHHHHHH
T ss_pred cceEEEeec-CCCCCHHHHHHHH
Confidence 456788898 9999999997554
No 482
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.77 E-value=0.015 Score=48.69 Aligned_cols=27 Identities=22% Similarity=0.090 Sum_probs=20.4
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
.+..+++++| ++|+||||++.++...+
T Consensus 98 ~~~~vI~ivG-~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAG-LQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEEC-STTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 3456888998 99999999976655433
No 483
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.76 E-value=0.017 Score=44.78 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=16.9
Q ss_pred eEEeecCCCCChHHHHHHHHHh
Q psy17517 35 RFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.++++| ++|+|||||+..++.
T Consensus 41 ~I~vvG-~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 41 TILVMG-KGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEE-STTSSHHHHHHHHHT
T ss_pred EEEEEC-CCCCCHHHHHHHHhC
Confidence 578999 999999999655544
No 484
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.76 E-value=0.0077 Score=44.72 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=16.0
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| ++|+|||||+.+++
T Consensus 17 ki~v~G-~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 17 KLVLVG-DGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEE-CTTSSHHHHHTTBH
T ss_pred EEEEEC-CCCCCHHHHHHHHH
Confidence 378999 99999999965433
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.73 E-value=0.011 Score=42.57 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.4
Q ss_pred CeEEeecCCCCChHHHHHHHH
Q psy17517 34 KRFQPMTNLSGGEKTVAALAL 54 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l 54 (163)
=.++++| ++|+|||||+.++
T Consensus 23 ~~i~v~G-~~~~GKssli~~l 42 (189)
T 2x77_A 23 IRVLMLG-LDNAGKTSILYRL 42 (189)
T ss_dssp EEEEEEE-ETTSSHHHHHHHT
T ss_pred eEEEEEC-CCCCCHHHHHHHH
Confidence 3578999 9999999995544
No 486
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.70 E-value=0.0063 Score=44.97 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=15.9
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q psy17517 35 RFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.++++| ++|+|||||+.++.
T Consensus 13 ki~vvG-~~~~GKSsli~~l~ 32 (218)
T 4djt_A 13 KICLIG-DGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEEC-CTTSSHHHHHCBCT
T ss_pred EEEEEC-CCCCCHHHHHHHHh
Confidence 478999 99999999954443
No 487
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.69 E-value=0.021 Score=44.95 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=18.4
Q ss_pred CeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 34 KRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 34 e~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
..+.+.| |+|+|||+++..+...+
T Consensus 37 ~~lLl~G-ppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWG-GKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEE-CTTSCHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCCCHHHHHHHHHHHh
Confidence 4566778 99999999976665444
No 488
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.69 E-value=0.02 Score=45.02 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=20.1
Q ss_pred eCCCCeEEeecCCCCChHHHHHHHHH
Q psy17517 30 VAPGKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 30 i~~Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
+..|..+.|.| |.|+|||||+..+.
T Consensus 28 l~~~~~v~i~G-~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 28 LENYPLTLLLG-IRRVGKSSLLRAFL 52 (350)
T ss_dssp HHHCSEEEEEC-CTTSSHHHHHHHHH
T ss_pred HhcCCeEEEEC-CCcCCHHHHHHHHH
Confidence 44568899999 99999999965544
No 489
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.66 E-value=0.021 Score=45.34 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=19.5
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+..-+.+.| |+|+|||+++..+...+
T Consensus 50 ~~~~vLl~G-ppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYG-PPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEEC-SSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEC-CCCCcHHHHHHHHHHHH
Confidence 345578888 99999999976665433
No 490
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.65 E-value=0.016 Score=44.96 Aligned_cols=22 Identities=5% Similarity=-0.082 Sum_probs=17.9
Q ss_pred eEEeecCCCCChHHHHHHHHHhc
Q psy17517 35 RFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 35 ~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.++++| .+|+|||||+.++++.
T Consensus 28 ~i~vvG-~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 28 QIAVVG-GQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEE-BTTSCHHHHHHHHHTS
T ss_pred eEEEEe-CCCCCHHHHHHHHHCC
Confidence 688999 9999999996555443
No 491
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.65 E-value=0.021 Score=45.50 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=18.7
Q ss_pred CCeEEeecCCCCChHHHHHHHHHh
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
+.-+.+.| |+|+|||+|+..+..
T Consensus 152 ~~~lll~G-~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYG-DMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEEC-STTSSHHHHHHHHHH
T ss_pred CceEEEEC-CCCCCHHHHHHHHHH
Confidence 67888999 999999999655443
No 492
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.60 E-value=0.017 Score=50.72 Aligned_cols=24 Identities=33% Similarity=0.252 Sum_probs=19.2
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHh
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLF 56 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~ 56 (163)
.|.++.+.| .+||||||++..+.-
T Consensus 51 ~g~lIvLtG-lsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTG-LSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEEC-STTSSHHHHHHHHHH
T ss_pred CCCEEEEEe-CCCCCHHHHHHHHHH
Confidence 566789999 999999999755533
No 493
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.51 E-value=0.02 Score=49.05 Aligned_cols=26 Identities=15% Similarity=-0.036 Sum_probs=19.8
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
....++.++| .+||||||++..+.-.
T Consensus 33 ~~~~lIvlvG-lpGSGKSTia~~La~~ 58 (520)
T 2axn_A 33 NSPTVIVMVG-LPARGKTYISKKLTRY 58 (520)
T ss_dssp CCCEEEEEEC-CTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHH
Confidence 3445788888 9999999998665433
No 494
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.47 E-value=0.025 Score=45.69 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=19.5
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
+..-+.|.| |+|+||||++..+...
T Consensus 116 ~~~~vLl~G-ppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFG-PPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEES-STTSSHHHHHHHHHHH
T ss_pred CCceEEEEC-CCCCCHHHHHHHHHHH
Confidence 456688898 9999999997665443
No 495
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.46 E-value=0.02 Score=43.55 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=17.4
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALL 55 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~ 55 (163)
.-+++++| ..|+||||++.++.
T Consensus 14 ~~i~~~~G-kgGvGKTTl~~~La 35 (262)
T 1yrb_A 14 SMIVVFVG-TAGSGKTTLTGEFG 35 (262)
T ss_dssp CEEEEEEC-STTSSHHHHHHHHH
T ss_pred eEEEEEeC-CCCCCHHHHHHHHH
Confidence 34667788 99999999976665
No 496
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.41 E-value=0.012 Score=41.35 Aligned_cols=22 Identities=9% Similarity=-0.151 Sum_probs=17.5
Q ss_pred CCCCeEEeecCCCCChHHHHHHH
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALA 53 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~ 53 (163)
..+.-+.+.| |+|+|||+++..
T Consensus 25 ~~~~~vll~G-~~GtGKt~lA~~ 46 (143)
T 3co5_A 25 KRTSPVFLTG-EAGSPFETVARY 46 (143)
T ss_dssp TCSSCEEEEE-ETTCCHHHHHGG
T ss_pred CCCCcEEEEC-CCCccHHHHHHH
Confidence 4456688899 999999999644
No 497
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.38 E-value=0.021 Score=47.94 Aligned_cols=25 Identities=16% Similarity=-0.083 Sum_probs=19.1
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 32 PGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 32 ~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
....+.++| .+||||||++..+...
T Consensus 38 ~~~~IvlvG-lpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVG-LPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEEC-CTTSSHHHHHHHHHHH
T ss_pred CcEEEEEEC-CCCCCHHHHHHHHHHH
Confidence 344678888 9999999997665443
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.34 E-value=0.027 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=19.0
Q ss_pred CCeEEeecCCCCChHHHHHHHHHhcc
Q psy17517 33 GKRFQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 33 Ge~~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
..-+.+.| |+|+||||++..+...+
T Consensus 72 ~~~ill~G-p~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIG-PTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEEC-CTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHHh
Confidence 34577888 99999999976655444
No 499
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.33 E-value=0.015 Score=48.91 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=23.9
Q ss_pred cCeeeEeeCCCCe--EEeecCCCCChHHHHHHHHHhcc
Q psy17517 23 QGVNYNCVAPGKR--FQPMTNLSGGEKTVAALALLFAI 58 (163)
Q Consensus 23 ~~vsl~~i~~Ge~--~~lvG~~nGsGKSTl~l~l~~~l 58 (163)
+.+.-. +..|+. +.+.| |+|+||||++..+...+
T Consensus 39 ~~L~~~-i~~~~~~~vLL~G-ppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 39 KPLPRA-IEAGHLHSMILWG-PPGTGKTTLAEVIARYA 74 (447)
T ss_dssp SHHHHH-HHHTCCCEEEEEC-STTSSHHHHHHHHHHHT
T ss_pred HHHHHH-HHcCCCcEEEEEC-CCCCcHHHHHHHHHHHh
Confidence 344444 666665 78888 99999999975554443
No 500
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.32 E-value=0.02 Score=48.90 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=19.3
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHhc
Q psy17517 31 APGKRFQPMTNLSGGEKTVAALALLFA 57 (163)
Q Consensus 31 ~~Ge~~~lvG~~nGsGKSTl~l~l~~~ 57 (163)
.+..+++++| ++|+||||++.++...
T Consensus 99 ~~~~vI~ivG-~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVG-LQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEEC-STTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHH
Confidence 3456899999 9999999997666543
Done!