RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17517
(163 letters)
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 155 bits (393), Expect = 3e-46
Identities = 49/80 (61%), Positives = 62/80 (77%)
Query: 84 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143
A L E+ +EP+ G+ Y+ P KRF+ M LSGGEKTVAALALLFAI+SY P+PFFV
Sbjct: 301 NASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFV 360
Query: 144 LDEIDAALDNTNIGKVASYI 163
LDE+DAALD TN+ ++A+YI
Sbjct: 361 LDEVDAALDITNVQRIAAYI 380
Score = 94.0 bits (234), Expect = 2e-23
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
A L E+ +EP+ G+ Y+ P KRF+ M LSGGEKTVAALALLFAI+
Sbjct: 301 NASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSY 353
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 92.0 bits (229), Expect = 2e-24
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 84 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143
A L ENPE+P+ G+ GK + + +SGGEK + ALA +FAI + PAPF++
Sbjct: 32 SARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYL 91
Query: 144 LDEIDAALDNTNIGKVASYI 163
DEIDA LD+ N+ +VA I
Sbjct: 92 FDEIDAHLDDANVKRVADLI 111
Score = 51.9 bits (125), Expect = 3e-09
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
A L ENPE+P+ G+ GK + + +SGGEK + ALA +FAI +
Sbjct: 32 SARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKF 84
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 92.0 bits (229), Expect = 4e-23
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 84 QAFLGP-ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFF 142
+ L + G + PG+R Q ++ LSGGEK + LALLFA+ P+PF+
Sbjct: 186 EGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFY 245
Query: 143 VLDEIDAALDNTNIGKVASYI 163
VLDE+D+ LD+ N + +
Sbjct: 246 VLDEVDSPLDDYNAERFKRLL 266
Score = 50.4 bits (121), Expect = 3e-08
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 9 QAFLGP-ENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
+ L + G + PG+R Q ++ LSGGEK + LALLFA+ I
Sbjct: 186 EGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEI 239
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 57.2 bits (138), Expect = 2e-10
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 97 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY---HPAPFFVLDEIDAALDN 153
L V + NLSGGE+ AL+L AI + + +LDE LD
Sbjct: 261 LTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDE 320
Query: 154 TNIGKVASYI 163
K+A
Sbjct: 321 NRRAKLAEIF 330
Score = 38.7 bits (90), Expect = 4e-04
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGL 69
L V + NLSGGE+ AL+L AI +
Sbjct: 261 LTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVEC 308
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 48.9 bits (116), Expect = 1e-07
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 109 KRFQPMTNLSGGEKTVAALALLFAIHSY--HPAPFFVLDEIDAALDNTNIGKVASYI 163
+ +P+T LSGGE+ LA A+ Y +LDE LD K+ + +
Sbjct: 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 297
Score = 31.9 bits (72), Expect = 0.070
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 34 KRFQPMTNLSGGEKTVAALALLFAIHRIAT 63
+ +P+T LSGGE+ LA A+
Sbjct: 241 GKERPLTFLSGGERIALGLAFRLAMSLYLA 270
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 4e-04
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 18/63 (28%)
Query: 22 LQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL------FAIHRIATIR---SLGLEDL 72
++ VNYN + Q +G + AL + + +I I SL LE++
Sbjct: 1841 VEIVNYNV--ENQ--Q--YVAAG---DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Query: 73 RSM 75
Sbjct: 1892 EGH 1894
Score = 35.8 bits (82), Expect = 0.005
Identities = 43/246 (17%), Positives = 67/246 (27%), Gaps = 111/246 (45%)
Query: 9 QAFL-GPEN-PEEPYL-------------QGVNYNCVA-------PGKRFQPMTNLSG-G 45
+L P N P++ YL Q +Y V PG+ + +G
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHS 274
Query: 46 EKTVAALA-------------------LLFAI----HRIA-------------------- 62
+ V A+A +LF I +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 63 -----TIRSLGLEDLRSMALAQNQ--------------SAQAFL--GPENPEEPYLQGVN 101
+I +L E ++ N A+ + GP P+ L G+N
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP--PQS--LYGLN 390
Query: 102 YNC---VAPGKRFQ---PMTNLSGGEKTVAALALL-----FAIHSYHPAPFFVLDEIDAA 150
AP Q P + K + L F HS+ P D I+
Sbjct: 391 LTLRKAKAPSGLDQSRIPFS----ERKLKFSNRFLPVASPF--HSHLLVP--ASDLINKD 442
Query: 151 LDNTNI 156
L N+
Sbjct: 443 LVKNNV 448
Score = 35.0 bits (80), Expect = 0.009
Identities = 26/153 (16%), Positives = 36/153 (23%), Gaps = 79/153 (51%)
Query: 37 QP-MTNLSGGEKTVAALALL-----------FAIHRIATIRSLG-------------LED 71
QP +T + AA L FA H SLG +E
Sbjct: 1733 QPALTLME-----KAAFEDLKSKGLIPADATFAGH------SLGEYAALASLADVMSIES 1781
Query: 72 L------R------------------SMALAQNQSAQAFLGPENPEE----------PYL 97
L R M A E + +
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALL 130
+ VNYN + Q +G + AL +
Sbjct: 1842 EIVNYNV--ENQ--Q--YVAAG---DLRALDTV 1865
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 36.9 bits (86), Expect = 0.002
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 112 QPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
+ + LSGGE A+A A F+ DE + LD KVA I
Sbjct: 224 RELHQLSGGELQRVAIAAALL----RKAHFYFFDEPSSYLDIRQRLKVARVI 271
Score = 31.9 bits (73), Expect = 0.072
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 112 QPMTNLSGGEKT-VA-ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
+ + +LSGGE VA A LL A ++LDE A LD V+ I
Sbjct: 467 RNVEDLSGGELQRVAIAATLL------RDADIYLLDEPSAYLDVEQRLAVSRAI 514
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 35.6 bits (82), Expect = 0.004
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 113 PMTNLSGGEKTVAALALLFAIHSY--HPAPFFVLDEIDAALD 152
P LSGGE+ + +++L ++ F +DE ++LD
Sbjct: 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLD 317
Score = 32.9 bits (75), Expect = 0.036
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 38 PMTNLSGGEKTVAALALLFAIHRIATIR 65
P LSGGE+ + +++L ++ +A+ R
Sbjct: 276 PARGLSGGERALISISLAMSLAEVASGR 303
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 33.9 bits (78), Expect = 0.008
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 99 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSY--HPAPFFVLDE 146
V + + +P+T LSGGE+ LA A+ Y +LDE
Sbjct: 45 FVVW-----EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE 89
Score = 28.9 bits (65), Expect = 0.52
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 24 GVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI 58
V + + +P+T LSGGE+ LA A+
Sbjct: 45 FVVW-----EGKERPLTFLSGGERIALGLAFRLAM 74
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 34.6 bits (80), Expect = 0.009
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 116 NLSGGEK-TVA-ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
LSGG + A +LL A ++ D+ + LD +A I
Sbjct: 138 ILSGGGLQRLLVAASLL------READVYIFDQPSSYLDVRERMNMAKAI 181
Score = 34.2 bits (79), Expect = 0.012
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 116 NLSGGEK-TVA-ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
+LSGGE + A L A +VLD+ + LD VA I
Sbjct: 385 DLSGGELQKLYIAATLA------KEADLYVLDQPSSYLDVEERYIVAKAI 428
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 34.2 bits (79), Expect = 0.012
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 113 PMTNLSGGEK-TVA-ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
LSGGE VA LAL PA +++DE A LD+ + I
Sbjct: 465 VQH-LSGGELQRVAIVLALG------IPADIYLIDEPSAYLDSEQRIICSKVI 510
Score = 33.8 bits (78), Expect = 0.017
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 116 NLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
LSGGE A+ + A ++ DE + LD A I
Sbjct: 221 KLSGGELQRFAIGMSCVQE----ADVYMFDEPSSYLDVKQRLNAAQII 264
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 32.3 bits (73), Expect = 0.057
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 112 QPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
+ LSGG+K LA ++ VLDE LD ++G ++ +
Sbjct: 897 SRIRGLSGGQKVKLVLAAG----TWQRPHLIVLDEPTNYLDRDSLGALSKAL 944
Score = 30.0 bits (67), Expect = 0.41
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 112 QPMTNLSGGEKTVAALA-LLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
P++ LSGG K ALA + A +LDE LD N+ + +Y+
Sbjct: 544 MPISALSGGWKMKLALARAVLR-----NADILLLDEPTNHLDTVNVAWLVNYL 591
Score = 27.3 bits (60), Expect = 2.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 37 QPMTNLSGGEKTVAALALL 55
+ LSGG+K LA
Sbjct: 897 SRIRGLSGGQKVKLVLAAG 915
Score = 26.2 bits (57), Expect = 6.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 37 QPMTNLSGGEKTVAALA 53
P++ LSGG K ALA
Sbjct: 544 MPISALSGGWKMKLALA 560
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 31.5 bits (72), Expect = 0.094
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 116 NLSGGEK-TVA-ALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
LSGGE VA A LL A ++LDE A LD V+ I
Sbjct: 401 ELSGGELQRVAIAATLL------RDADIYLLDEPSAYLDVEQRLAVSRAI 444
Score = 30.7 bits (70), Expect = 0.20
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 116 NLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
+LSGGE A+A + A F+ DE + LD A I
Sbjct: 158 HLSGGELQRVAIAAALLRN----ATFYFFDEPSSYLDIRQRLNAARAI 201
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIAT 63
GV N V+P + + + LA A R A
Sbjct: 195 FGVRINAVSPSIARHKFLEKTSSSELLDRLASDEAFGRAAE 235
Score = 25.6 bits (57), Expect = 7.3
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128
GV N V+P + + + LA
Sbjct: 195 FGVRINAVSPSIARHKFLEKTSSSELLDRLA 225
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 27.6 bits (62), Expect = 2.0
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 42 LSGGEKTVAALALLFAIHRIATIRSLGLEDL 72
LS G +++ + R +L LE L
Sbjct: 255 LSDGRIYEHFDHVIYCVGRSPDTENLKLEKL 285
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 27.1 bits (61), Expect = 2.8
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 40 TNLSGGEKTVAALALLFAIHRIATIRSLGLEDL 72
G + ++++A+ R R LGLE
Sbjct: 242 LVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAA 274
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 26.7 bits (60), Expect = 3.5
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIAT 63
GV N +APG P + + V A RI
Sbjct: 180 HGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGE 220
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 26.9 bits (60), Expect = 3.8
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 31 APGKRFQPMTNLSGGEKTVAALALLFAIHRIATIRSLGLEDL 72
PG G + ++FA+ R + + E +
Sbjct: 364 KPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETV 405
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 26.0 bits (58), Expect = 5.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 117 LSGGEKT-VA-ALALLFAIHSYHPAPFFVLDEIDAALDN 153
LSGGE+ +A A LL + DE ++LD+
Sbjct: 156 LSGGERQRIAIARCLLKD------PKIVIFDEATSSLDS 188
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 26.0 bits (58), Expect = 6.1
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 113 PMTNLSGGEKTVAALALLFA---IHSYHPAPFFVLDEIDAALD 152
LSGGE LA + + +LDE +LD
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus
subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Length = 330
Score = 26.1 bits (57), Expect = 6.1
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 134 HSYHPAPFFVLDEI-DAALDNTNIGKVASYI 163
H P L + + G+ A+YI
Sbjct: 11 HQKDINPALQLHDWVEYYRPFAANGQSANYI 41
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 26.0 bits (58), Expect = 6.7
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 85 AFLGPEN---PEEP------YLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHS 135
AF +N +P ++ V + + R LSGGEK A+A ++
Sbjct: 101 AF-AVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR--VPFFLSGGEKRRVAIA---SVIV 154
Query: 136 YHPAPFFVLDEIDAALD 152
+ P +LDE LD
Sbjct: 155 HEPD-ILILDEPLVGLD 170
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 25.9 bits (58), Expect = 7.1
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 23 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIAT 63
+ + N +APG + ++ V + + R+ T
Sbjct: 179 RNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGT 219
Score = 25.6 bits (57), Expect = 9.6
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 98 QGVNYNCVAPGKRFQPMTNLSGGEKTVAALA 128
+ + N +APG + ++ V +
Sbjct: 179 RNIRINAIAPGPIDTEANRTTTPKEMVDDIV 209
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 25.6 bits (57), Expect = 7.2
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 117 LSGGEKT-VA-ALALLFAIHSYHPAPFFVLDEIDAALDN 153
LSGGEK VA A +L A +LDE +ALD
Sbjct: 191 LSGGEKQRVAIARTILKA------PGIILLDEATSALDT 223
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 26.0 bits (58), Expect = 7.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 43 SGGEKTVAALALLFAIHRIATIRSLGLEDL 72
SG E T +L+AI R+ R+L LE
Sbjct: 268 SGKEDTGTFDTVLWAIGRVPETRTLNLEKA 297
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 25.6 bits (57), Expect = 7.6
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 16/41 (39%)
Query: 118 SGGEKT---VAALALL---FAIHSYHPAPFFVLDEIDAALD 152
SGGEK + +A+L I LDE D+ LD
Sbjct: 166 SGGEKKRNDILQMAVLEPELCI----------LDESDSGLD 196
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative; HET:
IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Length = 309
Score = 25.7 bits (57), Expect = 7.6
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 80 NQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGE----KTVAALALLFA--- 132
N + + ++ + + Y+ +A GKR +P+ ++ + V
Sbjct: 20 NAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMAL 79
Query: 133 --IHSY 136
+H+Y
Sbjct: 80 ELLHTY 85
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Length = 615
Score = 25.6 bits (57), Expect = 9.2
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 45 GEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPEN 91
G + AL I + +L DL L + ++ + +
Sbjct: 466 GYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKR 512
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,493,524
Number of extensions: 144263
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 68
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)