RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17517
(163 letters)
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 89.8 bits (221), Expect = 3e-22
Identities = 49/89 (55%), Positives = 64/89 (71%)
Query: 75 MALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIH 134
+ + A L E+ +EP+ G+ Y+ P KRF+ M LSGGEKTVAALALLFAI+
Sbjct: 291 NSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAIN 350
Query: 135 SYHPAPFFVLDEIDAALDNTNIGKVASYI 163
SY P+PFFVLDE+DAALD TN+ ++A+YI
Sbjct: 351 SYQPSPFFVLDEVDAALDITNVQRIAAYI 379
Score = 46.6 bits (109), Expect = 3e-07
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 1 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHR 60
+ + A L E+ +EP+ G+ Y+ P KRF+ M LSGGEKTVAALALLFAI+
Sbjct: 292 SNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINS 351
Query: 61 I 61
Sbjct: 352 Y 352
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 66.5 bits (161), Expect = 3e-14
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 84 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFV 143
A L ENPE+P+ G+ GK + + +SGGEK + ALA +FAI + PAPF++
Sbjct: 192 SARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYL 251
Query: 144 LDEIDAALDNTNIGKVASYI 163
DEIDA LD+ N+ +VA I
Sbjct: 252 FDEIDAHLDDANVKRVADLI 271
Score = 43.8 bits (102), Expect = 3e-06
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 9 QAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRI 61
A L ENPE+P+ G+ GK + + +SGGEK + ALA +FAI +
Sbjct: 192 SARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKF 244
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 44.4 bits (103), Expect = 2e-06
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 101 NYNCVAPGKRFQPMTNLSGGEKTVAA--LALLFAIHSYHPAPFFVLDEIDAALDNTNIGK 158
V + +P+T LSGGE+ L +++ +LDE LD K
Sbjct: 263 VRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRK 322
Query: 159 VASYI 163
+ + +
Sbjct: 323 LITIM 327
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 42.7 bits (99), Expect = 5e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 89 PENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEID 148
+ G + PG+R Q ++ LSGGEK + LALLFA+ P+PF+VLDE+D
Sbjct: 192 VSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVD 251
Query: 149 AALDNTNIGKVASYI 163
+ LD+ N + +
Sbjct: 252 SPLDDYNAERFKRLL 266
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 35.5 bits (80), Expect = 0.002
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 101 NYNCVAPGKRFQPMTNLSGGEKTVAALALLFAI--HSYHPAPFFVLDEIDAALDNTNIGK 158
V + +P+T LSGGE+ LA A+ + +LDE LD K
Sbjct: 186 VRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRK 245
Query: 159 VASYI 163
+ + +
Sbjct: 246 LITIM 250
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 31.0 bits (70), Expect = 0.046
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 115 TNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159
LSGG++ A+A +P +LDE +ALD + +
Sbjct: 151 VLLSGGQRQRIAIARAL----LRDSPILILDEATSALDTESERAI 191
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 28.6 bits (64), Expect = 0.30
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 115 TNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALD 152
LSGG+K ++A +F + P +LDE +ALD
Sbjct: 153 VKLSGGQKQRLSIARIF----LNNPPILILDEATSALD 186
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 27.2 bits (59), Expect = 0.79
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 3/110 (2%)
Query: 45 GEKTVAALALLFAIHRIATIRSLGLEDLRSMALAQNQSAQAFLGPENPEEPYLQGVNYNC 104
G+ + LF + R + + + ++ + + L G +
Sbjct: 70 GKTSFGLAMSLFLALKGK--RCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGR 127
Query: 105 VAPGKRFQPMTNLSGGEKTVAALALLF-AIHSYHPAPFFVLDEIDAALDN 153
+ ++ M NL + + L F +D++DA L
Sbjct: 128 IPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKA 177
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 26.8 bits (59), Expect = 1.0
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 107 PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKV 159
K +NLSGG+K A+A A + DE +ALD +
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALA----SNPKVLLCDEATSALDPATTRSI 179
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 26.7 bits (59), Expect = 1.3
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 107 PGKRFQPMTNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
+ LSGG++ A+A + ++DE + LD + + I
Sbjct: 127 EELLNRYPAQLSGGQRQRVAVARAIVVEP----DVLLMDEPLSNLDAKLRVAMRAEI 179
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.4 bits (58), Expect = 1.8
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 115 TNLSGGEKTVAALALLFAIHSYHPAPFFVLDEIDAALDNTNIGKVASYI 163
+SGG++ A+A F +LDE A+LD+ + V +
Sbjct: 138 VKISGGQRQRLAIARAF----LRNPKILMLDEATASLDSESESMVQKAL 182
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 26.2 bits (56), Expect = 2.2
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 90 ENPEEPYLQGVNYNCVAPGKRFQPM----TNLSGGEKTVAALALLFAIHSYHPAPFFVLD 145
E + L+ Y PGK+ + N ++ H A ++D
Sbjct: 1 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNA-SLLID 59
Query: 146 EI 147
+I
Sbjct: 60 DI 61
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 26.1 bits (56), Expect = 2.3
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 70 EDLRSMALAQNQSAQAFLGPENPEEPYL-QGVNYNCVAPGKRFQPMTNLSGGE 121
+ L + NQ+ F+ P + + + + Y + GKR +P + G
Sbjct: 5 QQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGH 57
Score = 24.6 bits (52), Expect = 6.8
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 5 NQSAQAFLGPENPEEPYL-QGVNYNCVAPGKRFQPMTNLSGGE 46
NQ+ F+ P + + + + Y + GKR +P + G
Sbjct: 15 NQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGH 57
>g2dg5.1 d.153.1.6 (A:37-387,B:391-580)
Gamma-glutamyltranspeptidase, GGT {Escherichia coli
[TaxId: 562]}
Length = 541
Score = 25.5 bits (55), Expect = 3.9
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 1 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEK 47
L NQ P P L G + N V P KR + + K
Sbjct: 386 ILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPTIVVK 432
Score = 25.5 bits (55), Expect = 3.9
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 76 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGKRFQPMTNLSGGEK 122
L NQ P P L G + N V P KR + + K
Sbjct: 386 ILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPTIVVK 432
>d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG,
OpgG), N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 374
Score = 24.7 bits (54), Expect = 7.2
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 76 ALAQNQSAQAFLGPENPEEPYLQGVNYNCVAPGK-RFQPMTNLSGGEKTVAALALLFAIH 134
AQ+ + + + P++ + + Y + +F K F +
Sbjct: 8 KQAQSLAGKGYETPKSNLPSVFRDMKYA--DYQQIQFNHDKAYWNNLK------TPFKLE 59
Query: 135 SYHPAPFF 142
YH +F
Sbjct: 60 FYHQGMYF 67
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 259
Score = 24.2 bits (52), Expect = 8.7
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 19 EPYLQGVNYNCVAPGKRFQPMTNLSGGEKTVAALALLFAIHRIAT 63
E G+ N VAP P+ ++ + + R
Sbjct: 175 EWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGE 219
>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 242
Score = 24.2 bits (52), Expect = 8.9
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 23 QGVNYNCVAPGKRFQPMT-NLSGGEKTVAALALLFAIHRIAT 63
+ N V P M +S + L + + A
Sbjct: 168 HKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAE 209
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,290
Number of extensions: 24193
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 30
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)