BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17526
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54JS5|WDR24_DICDI WD repeat-containing protein 24 homolog OS=Dictyostelium discoideum
GN=wdr24 PE=3 SV=1
Length = 1023
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 30 VSGLYSWCQGCSHGGHLSHMQEWFMKNN--VCPTGCGHYCESF 70
V G++ WCQGC HGGHL HM+ WF+ N CPTGC H C F
Sbjct: 979 VKGMWVWCQGCGHGGHLEHMKSWFIDKNQKSCPTGCTHICTPF 1021
>sp|Q96S15|WDR24_HUMAN WD repeat-containing protein 24 OS=Homo sapiens GN=WDR24 PE=1 SV=1
Length = 920
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 29 LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
+V GL+ WCQGCSHGGHL H+ +W ++ CP GCGH CE
Sbjct: 879 VVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 918
>sp|Q8CFJ9|WDR24_MOUSE WD repeat-containing protein 24 OS=Mus musculus GN=Wdr24 PE=2 SV=1
Length = 790
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 29 LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
+V GL+ WCQGCSHGGHL H+ +W ++ CP GCGH CE
Sbjct: 749 VVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 788
>sp|Q7ZVL2|WDR24_DANRE WD repeat-containing protein 24 OS=Danio rerio GN=wdr24 PE=2 SV=1
Length = 779
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 29 LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
+V GL+ WCQGCSHGGHL H+ EW ++ CP GCGH CE
Sbjct: 738 VVKGLFVWCQGCSHGGHLEHVMEWLKQSKHCPAGCGHLCE 777
>sp|Q5ZMV9|WDR24_CHICK WD repeat-containing protein 24 OS=Gallus gallus GN=WDR24 PE=2 SV=1
Length = 705
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 29 LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
+V GL+ WCQGCSHGGHL H+ +W ++ CP GCGH CE
Sbjct: 664 VVKGLFVWCQGCSHGGHLQHIMKWLETSSHCPAGCGHLCE 703
>sp|Q7ZX22|WDR24_XENLA WD repeat-containing protein 24 OS=Xenopus laevis GN=wdr24 PE=2
SV=1
Length = 780
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%)
Query: 29 LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
+V GL+ WCQGC HGGHL H+ W N CP GCGH CE
Sbjct: 739 VVKGLFVWCQGCCHGGHLQHIMNWMQNNCYCPAGCGHVCE 778
>sp|Q8C0M0|WDR59_MOUSE WD repeat-containing protein 59 OS=Mus musculus GN=Wdr59 PE=1 SV=2
Length = 992
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 30 VSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYC 67
V G ++C C HGGH SHM EWF VCPTGCG +C
Sbjct: 949 VRGSSNFCLTCGHGGHTSHMMEWFRTQEVCPTGCGCHC 986
>sp|Q6PJI9|WDR59_HUMAN WD repeat-containing protein 59 OS=Homo sapiens GN=WDR59 PE=1 SV=2
Length = 974
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 30 VSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYC 67
V G ++C C HGGH SHM EWF VCPTGCG +C
Sbjct: 931 VRGSSNFCLTCGHGGHTSHMMEWFRTQEVCPTGCGCHC 968
>sp|Q5ZLG9|WDR59_CHICK WD repeat-containing protein 59 OS=Gallus gallus GN=WDR59 PE=2 SV=1
Length = 973
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 30 VSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYC 67
V G ++C C HGGH SHM EWF VCPTGCG +C
Sbjct: 930 VRGSSNFCLTCGHGGHTSHMMEWFRTQEVCPTGCGCHC 967
>sp|Q54DS4|Y2056_DICDI WD repeat-containing protein DDB_G0292056 OS=Dictyostelium discoideum
GN=DDB_G0292056 PE=4 SV=1
Length = 1823
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 7 RCQHGLGNFGKLEGKIQML--VFCLVS--GLYSWCQGCSHGGHLSHMQEWFMKNNVCPTG 62
+C L NF KI + C +S GL S+C C HGGH +H++ WF K CPTG
Sbjct: 1599 KCNRKLNNFYCNNCKIYAVKCSICNISVRGLSSFCLYCGHGGHTNHIKGWFEKQTKCPTG 1658
Query: 63 CGHYC 67
CG C
Sbjct: 1659 CGCTC 1663
>sp|Q9VQ89|MIO_DROME WD repeat-containing protein mio OS=Drosophila melanogaster GN=mio
PE=2 SV=2
Length = 867
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 31 SGLYSWCQGCSHGGHLSHMQEWFMKNNVCP-TGCGHYC 67
S +SWCQ C HGGH H+ +WF +N+ CP + C C
Sbjct: 815 SKWFSWCQTCRHGGHTEHIMQWFKQNSECPVSSCNCRC 852
>sp|Q9VKK2|WDR59_DROME WD repeat-containing protein 59 homolog OS=Drosophila melanogaster
GN=CG4705 PE=1 SV=2
Length = 989
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 25 LVFCL-----VSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYC 67
++FC+ V G + C C HGGH+ HM +WF K+NVC T CG C
Sbjct: 931 VLFCVLCRLPVKGAANACLACGHGGHIDHMMQWFEKHNVCAT-CGCKC 977
>sp|P38164|SEA4_YEAST SEH-associated protein 4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEA4 PE=1 SV=2
Length = 1038
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 34 YSWCQGCSHGGHLSHMQEWFMKNNVCPT-GCGHYC 67
+S+C C+HG H H +EWF ++NVCPT GC C
Sbjct: 1002 FSFCLSCNHGMHAGHAEEWFDRHNVCPTPGCTCQC 1036
>sp|Q551B5|MIO_DICDI WD repeat-containing protein mio OS=Dictyostelium discoideum
GN=DDB_G0276673 PE=3 SV=1
Length = 1119
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 34 YSWCQGCSHGGHLSHMQEWFMKNNVCP-TGCGHYCESF 70
++WCQ C HGGH H+ +WF +++CP T C C
Sbjct: 1082 FTWCQTCRHGGHSQHILDWFKDHSICPVTSCDCRCSQL 1119
>sp|A4QNS7|MIOB_XENLA WD repeat-containing protein mio-B OS=Xenopus laevis PE=2 SV=1
Length = 880
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 YSWCQGCSHGGHLSHMQEWFMKNNVCP-TGCGHYC 67
++WC C HGGH HM WF ++ CP + C C
Sbjct: 829 FTWCHNCRHGGHAGHMLSWFKDHSECPVSACSCKC 863
>sp|Q5U5D4|MIOA_XENLA WD repeat-containing protein mio-A OS=Xenopus laevis PE=2 SV=1
Length = 880
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 YSWCQGCSHGGHLSHMQEWFMKNNVCP-TGCGHYC 67
++WC C HGGH HM WF ++ CP + C C
Sbjct: 829 FTWCHNCRHGGHAGHMLSWFKDHSECPVSACSCKC 863
>sp|Q8VE19|MIO_MOUSE WD repeat-containing protein mio OS=Mus musculus GN=Mios PE=2 SV=2
Length = 875
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 34 YSWCQGCSHGGHLSHMQEWFMKNNVCP-TGCGHYC 67
++WC C HGGH HM WF + CP + C C
Sbjct: 824 FTWCHNCRHGGHAGHMLSWFRDHAECPVSACTCKC 858
>sp|Q5RCA2|MIO_PONAB WD repeat-containing protein mio OS=Pongo abelii GN=MIOS PE=2 SV=1
Length = 875
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 34 YSWCQGCSHGGHLSHMQEWFMKNNVCP-TGCGHYC 67
++WC C HGGH HM WF + CP + C C
Sbjct: 824 FTWCHNCRHGGHAGHMLSWFRDHAECPVSACTCKC 858
>sp|Q9NXC5|MIO_HUMAN WD repeat-containing protein mio OS=Homo sapiens GN=MIOS PE=1 SV=2
Length = 875
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 34 YSWCQGCSHGGHLSHMQEWFMKNNVCP-TGCGHYC 67
++WC C HGGH HM WF + CP + C C
Sbjct: 824 FTWCHNCRHGGHAGHMLSWFRDHAECPVSACTCKC 858
>sp|Q09866|YAG1_SCHPO Uncharacterized WD repeat-containing protein C12G12.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC12G12.01c PE=1 SV=2
Length = 905
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 34 YSWCQGCSHGGHLSHMQEWFMKNNVCPT-GCGHYCE 68
+S+C C HG H SH EWF + +CP C C+
Sbjct: 868 FSFCLNCGHGAHASHASEWFSTHTICPVPNCDCECK 903
>sp|Q802U2|MIO_DANRE WD repeat-containing protein mio OS=Danio rerio GN=mios PE=2 SV=1
Length = 876
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 34 YSWCQGCSHGGHLSHMQEWFMKNNVCPTGC 63
++WC C HGGH HM WF ++ CP
Sbjct: 827 FTWCHNCRHGGHAGHMLSWFRDHSECPVSA 856
>sp|C4YN69|RTC1_CANAW Restriction of telomere capping protein 1 OS=Candida albicans (strain
WO-1) GN=RTC1 PE=3 SV=1
Length = 1088
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 40 CSHGGHLSHMQEWFM--KNNVCPTGCGH 65
C H GH ++EWF+ +N CP GCG+
Sbjct: 1058 CGHHGHFGCLKEWFIEDQNTECPGGCGY 1085
>sp|Q5ACL4|RTC1_CANAL Restriction of telomere capping protein 1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RTC1 PE=3 SV=1
Length = 1088
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 40 CSHGGHLSHMQEWFM--KNNVCPTGCGH 65
C H GH ++EWF+ +N CP GCG+
Sbjct: 1058 CGHHGHFGCLKEWFIEDQNTECPGGCGY 1085
>sp|Q75AV6|RTC1_ASHGO Restriction of telomere capping protein 1 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RTC1 PE=3 SV=2
Length = 1361
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFMKNNV--CPTGC 63
C HGGH +Q+WF+ + CP+GC
Sbjct: 1331 CGHGGHFECLQQWFLDEGMSECPSGC 1356
>sp|A3GIA4|RTC1_PICST Restriction of telomere capping protein 1 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=RTC1 PE=3 SV=2
Length = 1105
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 40 CSHGGHLSHMQEWFM--KNNVCPTGCGH 65
C H GH ++EWF+ +NN CP GC +
Sbjct: 1075 CGHRGHFGCLREWFIEDENNECPGGCDY 1102
>sp|Q08281|RTC1_YEAST Restriction of telomere capping protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RTC1 PE=1 SV=2
Length = 1341
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFMKNN--VCPTGC 63
C H GH +QEWF+ N CP GC
Sbjct: 1310 CGHEGHFQCIQEWFLDENEQECPGGC 1335
>sp|C8ZHH9|RTC1_YEAS8 Restriction of telomere capping protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=RTC1 PE=3
SV=1
Length = 1342
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFMKNN--VCPTGC 63
C H GH +QEWF+ N CP GC
Sbjct: 1311 CGHEGHFQCIQEWFLDENEQECPGGC 1336
>sp|A6ZN74|RTC1_YEAS7 Restriction of telomere capping protein 1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=RTC1 PE=3 SV=1
Length = 1335
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFMKNN--VCPTGC 63
C H GH +QEWF+ N CP GC
Sbjct: 1304 CGHEGHFQCIQEWFLDENEQECPGGC 1329
>sp|C7GV13|RTC1_YEAS2 Restriction of telomere capping protein 1 OS=Saccharomyces cerevisiae
(strain JAY291) GN=RTC1 PE=3 SV=1
Length = 1342
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFMKNN--VCPTGC 63
C H GH +QEWF+ N CP GC
Sbjct: 1311 CGHEGHFQCIQEWFLDENEQECPGGC 1336
>sp|B3LIS9|RTC1_YEAS1 Restriction of telomere capping protein 1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=RTC1 PE=3 SV=1
Length = 1342
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFMKNN--VCPTGC 63
C H GH +QEWF+ N CP GC
Sbjct: 1311 CGHEGHFQCIQEWFLDENEQECPGGC 1336
>sp|Q6BXX5|RTC1_DEBHA Restriction of telomere capping protein 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=RTC1 PE=3 SV=2
Length = 1386
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFM--KNNVCPTGC 63
C H GH ++EWF+ +N VCP GC
Sbjct: 1356 CGHRGHFGCLREWFIDQENIVCPGGC 1381
>sp|C5DJV1|RTC1_LACTC Restriction of telomere capping protein 1 OS=Lachancea thermotolerans
(strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=RTC1 PE=3
SV=1
Length = 1290
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 19 EGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNV--CPTGCGHY 66
E ++ L FC+++ C H GH ++WFM + CP+GC +
Sbjct: 1247 EQPLKKLTFCVLN--------CGHEGHPECFKKWFMNEEMSECPSGCSGF 1288
>sp|B9WN49|RTC1_CANDC Restriction of telomere capping protein 1 OS=Candida dubliniensis
(strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL
Y-17841) GN=RTC1 PE=3 SV=1
Length = 1098
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 40 CSHGGHLSHMQEWFM--KNNVCPTGCGH 65
C H GH ++EWF+ +N CP GC +
Sbjct: 1068 CGHQGHFGCLKEWFIEDQNTECPGGCDY 1095
>sp|Q6CME1|RTC1_KLULA Restriction of telomere capping protein 1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=RTC1 PE=3 SV=1
Length = 1321
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFMKNN--VCPTGC 63
C H GH +++WF N VCP GC
Sbjct: 1291 CGHEGHFECLKKWFFDENMDVCPLGC 1316
>sp|C4Y5P7|RTC1_CLAL4 Restriction of telomere capping protein 1 OS=Clavispora lusitaniae
(strain ATCC 42720) GN=RTC1 PE=3 SV=1
Length = 1158
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFM--KNNVCPTGC 63
C H GH +QEWF+ ++ CP GC
Sbjct: 1128 CGHRGHFGCLQEWFLDEQSTGCPGGC 1153
>sp|C5MIB1|RTC1_CANTT Restriction of telomere capping protein 1 OS=Candida tropicalis
(strain ATCC MYA-3404 / T1) GN=RTC1 PE=3 SV=1
Length = 1110
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 40 CSHGGHLSHMQEWFMK--NNVCPTGCGH 65
C H GH ++EWF++ N CP GC +
Sbjct: 1080 CGHQGHFGCLKEWFIQDENMECPGGCDY 1107
>sp|A5E6M3|RTC1_LODEL Restriction of telomere capping protein 1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=RTC1 PE=3 SV=1
Length = 1163
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFM--KNNVCPTGC 63
C H GH ++EWF+ +N CP GC
Sbjct: 1132 CGHRGHFGCLKEWFIDEQNVECPGGC 1157
>sp|C5DSV0|RTC1_ZYGRC Restriction of telomere capping protein 1 OS=Zygosaccharomyces rouxii
(strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL
Y-229) GN=RTC1 PE=3 SV=1
Length = 1273
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFMKNNV--CPTGC 63
C H GH +Q WF+ + CP GC
Sbjct: 1242 CGHEGHFQCLQSWFLDEGMAECPGGC 1267
>sp|A7TR10|RTC1_VANPO Restriction of telomere capping protein 1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=RTC1 PE=3
SV=1
Length = 1313
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 19 EGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN--NVCPTG 62
E ++ LV C+++ C H GH +++WF+ N CP G
Sbjct: 1271 EKPMKKLVMCVLA--------CGHEGHFQCLRDWFLNEGMNECPAG 1308
>sp|Q03897|WDR59_YEAST Maintenance of telomere capping protein 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MTC5 PE=1 SV=1
Length = 1148
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 37 CQGCSHGGHLSHMQEWFMKNNVCPTGCGHYC 67
C C H H S + W+ + CP+GCG C
Sbjct: 1112 CGNCQHVLHSSCARIWWEIGDECPSGCGCNC 1142
>sp|P97924|KALRN_RAT Kalirin OS=Rattus norvegicus GN=Kalrn PE=1 SV=3
Length = 2959
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 29 LVSGLYSWCQGCSHGGHLSHMQE 51
+SG+ +WC+ CS GG S MQ+
Sbjct: 409 FLSGVDAWCKMCSEGGLPSEMQD 431
>sp|A2CG49|KALRN_MOUSE Kalirin OS=Mus musculus GN=Kalrn PE=1 SV=1
Length = 2964
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 29 LVSGLYSWCQGCSHGGHLSHMQE 51
+SG+ +WC+ CS GG S MQ+
Sbjct: 409 FLSGVDAWCKMCSEGGLPSEMQD 431
>sp|O60229|KALRN_HUMAN Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2
Length = 2985
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 29 LVSGLYSWCQGCSHGGHLSHMQE 51
+SG+ +WC+ CS GG S MQ+
Sbjct: 427 FLSGVDAWCKMCSEGGLPSEMQD 449
>sp|B6YS43|GLYA_AZOPC Serine hydroxymethyltransferase OS=Azobacteroides
pseudotrichonymphae genomovar. CFP2 GN=glyA PE=3 SV=1
Length = 426
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 20 GKIQMLVF--CLVSGLYSWCQGCSHGGHLSH 48
+ M VF CL G Y G SHGGHLSH
Sbjct: 91 AQANMTVFLACLQPGDYFLGLGLSHGGHLSH 121
>sp|Q6FVJ1|RTC1_CANGA Restriction of telomere capping protein 1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RTC1 PE=3 SV=1
Length = 1336
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 40 CSHGGHLSHMQEWFMKNNV--CPTGC 63
C H GH +WF+ + CP GC
Sbjct: 1306 CGHEGHFECFTQWFITEGMSECPAGC 1331
>sp|O13686|WDR59_SCHPO Uncharacterized RWD, RING finger and WD repeat-containing protein
C11E3.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC11E3.05 PE=1 SV=1
Length = 1323
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 27 FCLVS--GLYSWCQGCSHGGHLSHMQEWFMKNN----VCPTGCGHYCE 68
FC +S GL C C H H +EWF + C +GCG C+
Sbjct: 1267 FCCLSIHGLCIVCGLCLHVMHEDCYKEWFSNGDSISQSCSSGCGCKCQ 1314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.519
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,583,354
Number of Sequences: 539616
Number of extensions: 964928
Number of successful extensions: 3309
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3279
Number of HSP's gapped (non-prelim): 47
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)