Query psy17526
Match_columns 70
No_of_seqs 109 out of 361
Neff 6.3
Searched_HMMs 29240
Date Sat Aug 17 00:49:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecl_A Ring-box protein 2; RNF 97.5 8.5E-05 2.9E-09 42.2 3.3 38 24-61 30-69 (81)
2 2ct0_A Non-SMC element 1 homol 97.3 3.5E-05 1.2E-09 44.1 0.3 37 24-61 19-57 (74)
3 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00066 2.2E-08 40.3 3.5 59 3-61 49-118 (133)
4 2ecm_A Ring finger and CHY zin 96.9 0.00012 4E-09 38.0 -0.4 27 35-61 22-48 (55)
5 1iym_A EL5; ring-H2 finger, ub 96.8 0.0003 1E-08 36.4 0.6 24 38-61 25-48 (55)
6 2kiz_A E3 ubiquitin-protein li 96.8 0.00056 1.9E-08 37.0 1.7 38 24-61 18-56 (69)
7 3dpl_R Ring-box protein 1; ubi 96.7 0.00066 2.2E-08 40.8 1.9 27 35-61 68-94 (106)
8 2ea6_A Ring finger protein 4; 96.7 0.00071 2.4E-08 36.2 1.9 27 35-61 35-61 (69)
9 4a0k_B E3 ubiquitin-protein li 96.7 0.00028 9.5E-09 43.4 0.0 24 38-61 82-105 (117)
10 3ng2_A RNF4, snurf, ring finge 96.6 0.00079 2.7E-08 36.3 1.7 28 34-61 29-56 (71)
11 2xeu_A Ring finger protein 4; 96.6 0.00084 2.9E-08 35.4 1.5 27 35-61 23-49 (64)
12 2ep4_A Ring finger protein 24; 96.6 0.00066 2.3E-08 37.2 1.0 24 38-61 34-57 (74)
13 2ecy_A TNF receptor-associated 96.5 0.0011 3.6E-08 35.7 1.7 36 24-61 19-55 (66)
14 2l0b_A E3 ubiquitin-protein li 96.4 0.0011 3.6E-08 38.1 1.5 38 24-61 44-82 (91)
15 4ayc_A E3 ubiquitin-protein li 96.4 0.00063 2.1E-08 41.8 0.4 36 24-61 57-92 (138)
16 1v87_A Deltex protein 2; ring- 96.4 0.0018 6.3E-08 38.0 2.3 25 37-61 58-87 (114)
17 1x4j_A Ring finger protein 38; 96.3 0.0007 2.4E-08 37.3 0.3 38 24-61 27-65 (75)
18 2ysj_A Tripartite motif-contai 96.3 0.0013 4.4E-08 34.9 1.1 36 24-61 24-62 (63)
19 2ect_A Ring finger protein 126 96.2 0.00092 3.2E-08 36.9 0.4 38 24-61 19-57 (78)
20 2ecj_A Tripartite motif-contai 96.2 0.0017 5.7E-08 33.7 1.2 36 24-61 19-57 (58)
21 1chc_A Equine herpes virus-1 r 96.1 0.0014 4.6E-08 35.2 0.5 26 36-61 20-45 (68)
22 2csy_A Zinc finger protein 183 96.0 0.0011 3.9E-08 36.9 0.2 36 24-61 19-54 (81)
23 2d8t_A Dactylidin, ring finger 96.0 0.00052 1.8E-08 37.5 -1.3 36 24-61 19-54 (71)
24 2y43_A E3 ubiquitin-protein li 95.8 0.0023 8E-08 36.9 0.9 37 24-61 26-62 (99)
25 2djb_A Polycomb group ring fin 95.8 0.0045 1.5E-07 33.7 2.0 37 24-61 19-55 (72)
26 4ap4_A E3 ubiquitin ligase RNF 95.5 0.0063 2.2E-07 35.9 2.0 27 35-61 27-53 (133)
27 3lrq_A E3 ubiquitin-protein li 95.5 0.0059 2E-07 35.5 1.8 37 24-61 26-63 (100)
28 2ckl_A Polycomb group ring fin 95.4 0.009 3.1E-07 34.9 2.4 37 24-61 19-55 (108)
29 2yur_A Retinoblastoma-binding 95.4 0.0023 8E-08 35.2 -0.3 36 24-61 19-57 (74)
30 2ysl_A Tripartite motif-contai 95.3 0.0035 1.2E-07 33.9 0.3 36 24-61 24-62 (73)
31 2ckl_B Ubiquitin ligase protei 95.2 0.0059 2E-07 38.2 1.2 37 24-61 58-95 (165)
32 1t1h_A Gspef-atpub14, armadill 95.2 0.0038 1.3E-07 34.3 0.3 36 24-61 12-48 (78)
33 2ecn_A Ring finger protein 141 95.1 0.0029 1E-07 34.1 -0.5 35 24-61 19-53 (70)
34 3nw0_A Non-structural maintena 95.0 0.0067 2.3E-07 40.9 1.1 39 24-64 184-224 (238)
35 2ecv_A Tripartite motif-contai 94.9 0.0061 2.1E-07 33.5 0.6 36 24-61 23-64 (85)
36 1rmd_A RAG1; V(D)J recombinati 94.6 0.007 2.4E-07 35.7 0.4 36 24-61 27-63 (116)
37 2egp_A Tripartite motif-contai 94.5 0.0039 1.3E-07 34.2 -1.0 36 24-61 16-58 (79)
38 1jm7_A BRCA1, breast cancer ty 94.4 0.012 4E-07 34.2 1.0 36 24-61 25-63 (112)
39 2ct2_A Tripartite motif protei 94.4 0.017 5.9E-07 32.0 1.6 24 38-61 35-61 (88)
40 2ecw_A Tripartite motif-contai 94.1 0.031 1.1E-06 30.5 2.3 36 24-61 23-64 (85)
41 1g25_A CDK-activating kinase a 94.0 0.043 1.5E-06 29.0 2.7 24 38-61 24-48 (65)
42 3fl2_A E3 ubiquitin-protein li 93.9 0.016 5.4E-07 34.6 0.8 36 24-61 56-92 (124)
43 1vyx_A ORF K3, K3RING; zinc-bi 93.4 0.069 2.4E-06 28.7 2.9 28 33-61 20-52 (60)
44 1z6u_A NP95-like ring finger p 93.4 0.023 7.7E-07 35.5 0.9 36 24-61 82-118 (150)
45 3hct_A TNF receptor-associated 93.2 0.014 4.7E-07 34.7 -0.3 36 24-61 22-58 (118)
46 2d8s_A Cellular modulator of i 93.1 0.024 8E-07 32.2 0.6 21 41-61 41-63 (80)
47 3ztg_A E3 ubiquitin-protein li 92.8 0.03 1E-06 31.5 0.7 37 24-61 17-55 (92)
48 3l11_A E3 ubiquitin-protein li 90.4 0.017 5.9E-07 33.9 -2.1 36 24-61 19-55 (115)
49 2yu4_A E3 SUMO-protein ligase 89.5 0.1 3.4E-06 29.9 0.8 26 39-64 25-57 (94)
50 3knv_A TNF receptor-associated 87.9 0.078 2.7E-06 32.7 -0.5 36 24-61 35-71 (141)
51 2y1n_A E3 ubiquitin-protein li 87.2 0.31 1E-05 35.2 2.2 36 24-61 336-372 (389)
52 3hcs_A TNF receptor-associated 86.5 0.11 3.9E-06 32.3 -0.3 36 24-61 22-58 (170)
53 1wgm_A Ubiquitin conjugation f 85.9 0.23 7.7E-06 28.9 0.8 36 24-61 26-62 (98)
54 3k1l_B Fancl; UBC, ring, RWD, 84.6 0.13 4.6E-06 37.2 -0.7 21 35-55 327-349 (381)
55 2kr4_A Ubiquitin conjugation f 84.2 0.54 1.8E-05 26.4 1.9 36 24-61 18-53 (85)
56 2jrp_A Putative cytoplasmic pr 82.9 0.27 9.2E-06 28.5 0.2 15 1-15 1-15 (81)
57 2kre_A Ubiquitin conjugation f 77.7 0.88 3E-05 26.4 1.3 36 24-61 33-68 (100)
58 2vje_A E3 ubiquitin-protein li 76.6 0.42 1.4E-05 25.4 -0.4 38 24-61 12-50 (64)
59 2vje_B MDM4 protein; proto-onc 75.4 0.46 1.6E-05 25.2 -0.4 38 24-61 11-49 (63)
60 2bay_A PRE-mRNA splicing facto 74.9 0.86 2.9E-05 24.2 0.6 25 39-63 21-46 (61)
61 3htk_C E3 SUMO-protein ligase 74.6 0.88 3E-05 31.4 0.8 41 24-65 185-228 (267)
62 1zfo_A LAsp-1; LIM domain, zin 71.6 1.8 6.1E-05 20.1 1.3 12 1-12 2-13 (31)
63 1jm7_B BARD1, BRCA1-associated 69.8 0.62 2.1E-05 27.2 -0.8 21 39-61 40-60 (117)
64 3j21_g 50S ribosomal protein L 67.3 1.9 6.3E-05 22.8 0.9 20 3-22 15-34 (51)
65 1ee8_A MUTM (FPG) protein; bet 66.9 1.5 5.1E-05 29.7 0.5 14 31-44 252-265 (266)
66 1tfi_A Transcriptional elongat 65.5 3.5 0.00012 21.3 1.7 36 3-43 10-46 (50)
67 1e4u_A Transcriptional repress 64.2 5.6 0.00019 21.9 2.6 23 39-61 32-55 (78)
68 3qt1_I DNA-directed RNA polyme 63.2 4.6 0.00016 24.9 2.2 10 3-12 25-34 (133)
69 1qyp_A RNA polymerase II; tran 59.9 3.4 0.00012 21.5 1.0 15 28-43 38-52 (57)
70 4ic3_A E3 ubiquitin-protein li 59.0 2.6 8.9E-05 22.7 0.5 32 24-61 28-60 (74)
71 2c2l_A CHIP, carboxy terminus 58.4 1.8 6.3E-05 28.0 -0.2 36 24-61 212-248 (281)
72 1wim_A KIAA0161 protein; ring 58.1 4 0.00014 22.7 1.2 28 38-65 24-60 (94)
73 3u50_C Telomerase-associated p 57.2 2.9 0.0001 26.9 0.6 22 2-23 42-66 (172)
74 3h0g_I DNA-directed RNA polyme 53.9 7 0.00024 23.1 1.9 10 3-12 5-14 (113)
75 2f42_A STIP1 homology and U-bo 49.8 4.9 0.00017 25.8 0.7 36 24-61 110-146 (179)
76 3po3_S Transcription elongatio 47.4 8.4 0.00029 24.6 1.6 16 27-43 159-174 (178)
77 1l1o_C Replication protein A 7 42.7 7 0.00024 24.7 0.6 23 1-23 42-69 (181)
78 1x0t_A Ribonuclease P protein 41.2 9.8 0.00033 22.8 1.1 38 2-43 65-103 (120)
79 1vq8_Z 50S ribosomal protein L 39.5 6.4 0.00022 22.5 0.0 19 3-21 28-50 (83)
80 3j20_Y 30S ribosomal protein S 35.7 7.9 0.00027 19.9 0.0 16 28-43 13-28 (50)
81 1twf_I B12.6, DNA-directed RNA 34.6 15 0.00053 21.9 1.2 11 3-13 5-15 (122)
82 2ysm_A Myeloid/lymphoid or mix 34.4 3.7 0.00013 23.8 -1.6 37 14-50 46-85 (111)
83 2k3r_A Ribonuclease P protein 34.2 11 0.00038 22.7 0.6 38 2-43 60-98 (123)
84 2e72_A POGO transposable eleme 33.3 17 0.00058 19.0 1.1 12 2-13 12-23 (49)
85 2k4x_A 30S ribosomal protein S 33.2 18 0.00061 18.9 1.2 11 2-12 18-28 (55)
86 2i5o_A DNA polymerase ETA; zin 32.6 8.1 0.00028 19.1 -0.2 12 3-14 10-21 (39)
87 2jne_A Hypothetical protein YF 31.8 16 0.00053 21.8 0.9 22 1-22 31-54 (101)
88 3w0f_A Endonuclease 8-like 3; 31.3 13 0.00045 25.6 0.6 31 4-46 253-285 (287)
89 3u6p_A Formamidopyrimidine-DNA 29.3 15 0.0005 24.8 0.5 10 4-13 247-256 (273)
90 1k3x_A Endonuclease VIII; hydr 29.1 15 0.00051 24.6 0.5 10 4-13 236-245 (262)
91 2lo3_A SAGA-associated factor 28.6 11 0.00037 19.3 -0.2 12 2-13 17-28 (44)
92 2xzf_A Formamidopyrimidine-DNA 28.5 16 0.00053 24.6 0.6 26 4-41 244-269 (271)
93 3j21_j 50S ribosomal protein L 28.2 17 0.00057 21.3 0.6 11 2-12 8-18 (94)
94 1bor_A Transcription factor PM 27.8 7.6 0.00026 19.5 -0.9 21 38-61 22-42 (56)
95 1k82_A Formamidopyrimidine-DNA 27.3 17 0.00057 24.5 0.5 11 4-14 242-252 (268)
96 2kwj_A Zinc finger protein DPF 26.6 3.9 0.00013 24.1 -2.5 35 16-50 52-89 (114)
97 2hm3_A Nematocyst outer WALL a 26.3 29 0.001 16.0 1.1 12 56-67 5-16 (31)
98 1v5n_A PDI-like hypothetical p 25.2 22 0.00074 20.1 0.7 27 24-50 51-77 (89)
99 2jx1_A Myelin transcription fa 24.7 34 0.0012 16.1 1.2 8 57-64 2-10 (31)
100 1wd2_A Ariadne-1 protein homol 23.6 42 0.0014 17.5 1.6 18 3-21 7-24 (60)
101 3cng_A Nudix hydrolase; struct 21.8 32 0.0011 20.9 1.0 11 2-12 3-13 (189)
102 2bl6_A Nucleocapsid protein P1 21.7 33 0.0011 15.9 0.9 12 35-46 20-31 (37)
103 3mhs_C SAGA-associated factor 21.7 19 0.00065 21.3 -0.0 11 2-12 70-80 (99)
104 3asl_A E3 ubiquitin-protein li 21.0 14 0.00048 20.0 -0.7 36 15-50 12-49 (70)
105 4esj_A Type-2 restriction enzy 20.9 37 0.0013 23.3 1.2 11 2-12 34-45 (257)
106 1vq8_3 50S ribosomal protein L 20.4 15 0.00051 21.5 -0.7 11 2-12 8-18 (92)
107 3c5k_A HD6, histone deacetylas 20.2 21 0.00072 21.0 -0.1 23 32-55 35-61 (109)
108 1yuz_A Nigerythrin; rubrythrin 20.0 32 0.0011 22.1 0.8 28 34-69 171-198 (202)
109 2kdx_A HYPA, hydrogenase/ureas 20.0 36 0.0012 19.8 1.0 9 4-12 92-100 (119)
No 1
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=8.5e-05 Score=42.17 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=28.4
Q ss_pred HHHHhhhh--cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVS--GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~--~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+... ...+.-+.|+|..|.+++.+|+..+.+||+
T Consensus 30 ~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 69 (81)
T 2ecl_A 30 LRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPL 69 (81)
T ss_dssp TTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTT
T ss_pred cccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCC
Confidence 45544432 223344579999999999999999999997
No 2
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=3.5e-05 Score=44.10 Aligned_cols=37 Identities=24% Similarity=0.494 Sum_probs=29.4
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCC--CCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN--NVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~--~~CP~ 61 (70)
+||.+++. .-..|..|+|..|.+++..||+.. .+||.
T Consensus 19 ~IC~~~i~-~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~ 57 (74)
T 2ct0_A 19 NICHSLLI-QGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 57 (74)
T ss_dssp SSSCCBCS-SSEECSSSCCEECHHHHHHHSTTCSSCCCTT
T ss_pred cchhhHcc-cCCccCCCCchhhHHHHHHHHHhcCCCCCCC
Confidence 45544443 235788999999999999999987 89997
No 3
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.99 E-value=0.00066 Score=40.30 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=39.3
Q ss_pred ccCccCCCCCCcCcccccc-----ch-HHHHhhhh-----cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 3 AHSDRCQHGLGNFGKLEGK-----IQ-MLVFCLVS-----GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 3 ~~C~~C~~~l~~~~~~C~~-----~~-~iC~~~v~-----~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
..||.|++++......=.. .. +||.+.++ +.......|+|..|.+++.+|+.....||+
T Consensus 49 ~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 118 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 118 (133)
T ss_dssp SBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCC
Confidence 4799999988432110000 00 55633322 223456789999999999999999999997
No 4
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.90 E-value=0.00012 Score=37.97 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=24.1
Q ss_pred ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 35 SWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
+.-+.|+|..|.+++.+|++....||+
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 48 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEGYRCPL 48 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHTCCCTT
T ss_pred eEecCCCCcccHHHHHHHHHcCCcCCC
Confidence 445679999999999999999999997
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.78 E-value=0.0003 Score=36.44 Aligned_cols=24 Identities=29% Similarity=0.764 Sum_probs=22.4
Q ss_pred cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 38 QGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 38 ~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
+.|+|..|.+++++|+++...||+
T Consensus 25 ~~C~H~f~~~Ci~~w~~~~~~CP~ 48 (55)
T 1iym_A 25 PRCGHGFHAECVDMWLGSHSTCPL 48 (55)
T ss_dssp SSSCCEECTTHHHHTTTTCCSCSS
T ss_pred CCCCCcccHHHHHHHHHcCCcCcC
Confidence 369999999999999999999997
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.76 E-value=0.00056 Score=36.96 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=28.5
Q ss_pred HHHHhhhh-cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVS-GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~-~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.+. +-.+.-+.|+|..|..++.+|+.....||+
T Consensus 18 ~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~ 56 (69)
T 2kiz_A 18 TICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPI 56 (69)
T ss_dssp TTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred eeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcC
Confidence 45544442 223344579999999999999999999997
No 7
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.71 E-value=0.00066 Score=40.79 Aligned_cols=27 Identities=26% Similarity=0.624 Sum_probs=24.1
Q ss_pred ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 35 SWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
+.-+.|+|..|.+++.+|+..+..||+
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 94 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKTRQVCPL 94 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTTCSBCSS
T ss_pred EeecccCcEECHHHHHHHHHcCCcCcC
Confidence 344689999999999999999999997
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.71 E-value=0.00071 Score=36.17 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=24.3
Q ss_pred ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 35 SWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
+.-+.|+|..|.+++.+|+.....||+
T Consensus 35 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 61 (69)
T 2ea6_A 35 IVSTECGHVFCSQCLRDSLKNANTCPT 61 (69)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCSSCTT
T ss_pred eEeCCCCChhcHHHHHHHHHcCCCCCC
Confidence 355789999999999999999999997
No 9
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.67 E-value=0.00028 Score=43.39 Aligned_cols=24 Identities=29% Similarity=0.779 Sum_probs=0.0
Q ss_pred cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 38 QGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 38 ~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
+.|+|..|.+++.+|+..+..||.
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~~~CP~ 105 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTRQVCPL 105 (117)
T ss_dssp ------------------------
T ss_pred CCcCceEcHHHHHHHHHcCCcCCC
Confidence 479999999999999999999997
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.63 E-value=0.00079 Score=36.33 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=25.0
Q ss_pred cccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 34 YSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 34 ~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
...-..|+|..|.+++.+|+.....||+
T Consensus 29 ~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 56 (71)
T 3ng2_A 29 LIVSTECGHVFCSQCLRDSLKNANTCPT 56 (71)
T ss_dssp CEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred CeEeCCCCChHhHHHHHHHHHcCCCCCC
Confidence 3456789999999999999999999997
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.58 E-value=0.00084 Score=35.37 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=24.3
Q ss_pred ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 35 SWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
..-..|+|..|.+++.+|++++..||.
T Consensus 23 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 49 (64)
T 2xeu_A 23 IVSTECGHVFCSQCLRDSLKNANTCPT 49 (64)
T ss_dssp EEEETTSCEEEHHHHHHHHHHCSBCTT
T ss_pred EEeCCCCCchhHHHHHHHHHcCCCCCC
Confidence 355689999999999999999999997
No 12
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.00066 Score=37.15 Aligned_cols=24 Identities=29% Similarity=0.672 Sum_probs=22.3
Q ss_pred cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 38 QGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 38 ~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
+.|+|..|.+++.+|+.....||+
T Consensus 34 ~~C~H~f~~~Ci~~~~~~~~~CP~ 57 (74)
T 2ep4_A 34 CPCKHAFHRKCLIKWLEVRKVCPL 57 (74)
T ss_dssp ETTTEEEEHHHHHHHHHHCSBCTT
T ss_pred cCCCCEecHHHHHHHHHcCCcCCC
Confidence 369999999999999999999997
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.0011 Score=35.67 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=27.7
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHh-CCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM-KNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~-~~~~CP~ 61 (70)
.||.+.++.-.. ..|+|..+.+++.+|+. ....||+
T Consensus 19 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~ 55 (66)
T 2ecy_A 19 EKCHLVLCSPKQ--TECGHRFCESCMAALLSSSSPKCTA 55 (66)
T ss_dssp TTTCCEESSCCC--CSSSCCCCHHHHHHHHTTSSCCCTT
T ss_pred CCCChHhcCeeE--CCCCCHHHHHHHHHHHHhCcCCCCC
Confidence 566555554444 58999999999999995 5678997
No 14
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.44 E-value=0.0011 Score=38.13 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=28.1
Q ss_pred HHHHhhhh-cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVS-GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~-~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
+||.+.+. +-.+.-+.|+|..|..++.+|+..+..||+
T Consensus 44 ~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~ 82 (91)
T 2l0b_A 44 PICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPV 82 (91)
T ss_dssp TTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTT
T ss_pred cccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcC
Confidence 56644332 222333569999999999999999999997
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.41 E-value=0.00063 Score=41.79 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=27.5
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.+....+ +.|||..|..|+.+|+.....||+
T Consensus 57 ~iC~~~~~~~~~--~~CgH~fc~~Ci~~~~~~~~~CP~ 92 (138)
T 4ayc_A 57 IICSEYFIEAVT--LNCAHSFCSYCINEWMKRKIECPI 92 (138)
T ss_dssp TTTCSBCSSEEE--ETTSCEEEHHHHHHHTTTCSBCTT
T ss_pred cccCcccCCceE--CCCCCCccHHHHHHHHHcCCcCCC
Confidence 445444443322 479999999999999999999997
No 16
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.37 E-value=0.0018 Score=38.04 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.0
Q ss_pred ccCCCCCChHHHHHHHHh-----CCCCCCC
Q psy17526 37 CQGCSHGGHLSHMQEWFM-----KNNVCPT 61 (70)
Q Consensus 37 C~~C~HggH~~h~~~Wf~-----~~~~CP~ 61 (70)
-+.|+|..|.+++.+|+. ....||+
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~ 87 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTT
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCC
Confidence 578999999999999994 5678997
No 17
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.34 E-value=0.0007 Score=37.28 Aligned_cols=38 Identities=21% Similarity=0.527 Sum_probs=29.2
Q ss_pred HHHHhhhh-cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVS-GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~-~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.+. +-.+..+.|+|..|.+++.+|+..+..||+
T Consensus 27 ~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~ 65 (75)
T 1x4j_A 27 VVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPI 65 (75)
T ss_dssp TTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTT
T ss_pred eECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcC
Confidence 56654442 223445669999999999999999999997
No 18
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.25 E-value=0.0013 Score=34.95 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHh---CCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM---KNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~---~~~~CP~ 61 (70)
.||.+.++...+ +.|+|..+..++.+|+. ....||+
T Consensus 24 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (63)
T 2ysj_A 24 PICLDILQKPVT--IDCGHNFCLKCITQIGETSCGFFKCPL 62 (63)
T ss_dssp TTTCSBCSSCEE--CTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred CcCCchhCCeEE--eCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence 566665555444 38999999999999998 4568986
No 19
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.22 E-value=0.00092 Score=36.89 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHhhhhc-ccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSG-LYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~-l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.+.. ..+.-+.|+|..|..++.+|+.....||+
T Consensus 19 ~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~ 57 (78)
T 2ect_A 19 PVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPV 57 (78)
T ss_dssp TTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTT
T ss_pred eeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcC
Confidence 455444321 12223469999999999999999999997
No 20
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.0017 Score=33.69 Aligned_cols=36 Identities=14% Similarity=0.371 Sum_probs=25.5
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHh---CCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM---KNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~---~~~~CP~ 61 (70)
.||.+.++.-.+ +.|+|..|..++.+|+. ....||+
T Consensus 19 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 19 SVCLEYLKEPVI--IECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp SSSCCBCSSCCC--CSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred ccCCcccCccEe--CCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 455444444332 57999999999999965 4578886
No 21
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.06 E-value=0.0014 Score=35.22 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=23.4
Q ss_pred cccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 36 WCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 36 ~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.-..|+|..|.+++.+|+.....||.
T Consensus 20 ~~~~C~H~fc~~Ci~~~~~~~~~CP~ 45 (68)
T 1chc_A 20 MALPCLHAFCYVCITRWIRQNPTCPL 45 (68)
T ss_dssp EETTTTEEESTTHHHHHHHHSCSTTT
T ss_pred EecCCCCeeHHHHHHHHHhCcCcCcC
Confidence 34579999999999999999999997
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.04 E-value=0.0011 Score=36.89 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=27.9
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.++..++ ..|+|..+..++.+|+.....||+
T Consensus 19 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~CP~ 54 (81)
T 2csy_A 19 FICRQAFQNPVV--TKCRHYFCESCALEHFRATPRCYI 54 (81)
T ss_dssp SSSCSBCCSEEE--CTTSCEEEHHHHHHHHHHCSBCSS
T ss_pred cCCCchhcCeeE--ccCCCHhHHHHHHHHHHCCCcCCC
Confidence 455444444333 689999999999999999999997
No 23
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.01 E-value=0.00052 Score=37.51 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=27.4
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.++...+ +.|+|..|..++.+|+.....||+
T Consensus 19 ~IC~~~~~~~~~--~~CgH~fC~~Ci~~~~~~~~~CP~ 54 (71)
T 2d8t_A 19 AICLQTCVHPVS--LPCKHVFCYLCVKGASWLGKRCAL 54 (71)
T ss_dssp SSSSSBCSSEEE--ETTTEEEEHHHHHHCTTCSSBCSS
T ss_pred ccCCcccCCCEE--ccCCCHHHHHHHHHHHHCCCcCcC
Confidence 455444443322 369999999999999999999997
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.84 E-value=0.0023 Score=36.85 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=28.1
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.+..-. .-..|||..|..++.+|+.....||+
T Consensus 26 ~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~CP~ 62 (99)
T 2y43_A 26 GICFEYFNIAM-IIPQCSHNYCSLCIRKFLSYKTQCPT 62 (99)
T ss_dssp TTTCSBCSSEE-ECTTTCCEEEHHHHHHHHTTCCBCTT
T ss_pred ccCChhhCCcC-EECCCCCHhhHHHHHHHHHCCCCCCC
Confidence 45655544322 22589999999999999999999997
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.82 E-value=0.0045 Score=33.73 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.++.- +.-..|+|..+.+++.+|++....||+
T Consensus 19 ~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 55 (72)
T 2djb_A 19 SICKGYLIDA-TTITECLHTFCKSCIVRHFYYSNRCPK 55 (72)
T ss_dssp TTTSSCCSSC-EECSSSCCEECHHHHHHHHHHCSSCTT
T ss_pred CCCChHHHCc-CEECCCCCHHHHHHHHHHHHcCCcCCC
Confidence 5665555432 222489999999999999999999997
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.53 E-value=0.0063 Score=35.91 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=24.5
Q ss_pred ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 35 SWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
..-+.|||..|.+++.+|+.+...||+
T Consensus 27 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 53 (133)
T 4ap4_A 27 IVSTECGHVFCSQCLRDSLKNANTCPT 53 (133)
T ss_dssp EEEETTCCEEEHHHHHHHHTTCSBCTT
T ss_pred eEecCCCChhhHHHHHHHHHhCCCCCC
Confidence 356789999999999999999999997
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.51 E-value=0.0059 Score=35.47 Aligned_cols=37 Identities=19% Similarity=0.521 Sum_probs=28.9
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN-NVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~-~~CP~ 61 (70)
.||.+.+.. .+.+..|||..+..++.+|+... ..||+
T Consensus 26 ~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~ 63 (100)
T 3lrq_A 26 FICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPH 63 (100)
T ss_dssp TTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTT
T ss_pred ccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCC
Confidence 455555543 34558999999999999999998 69997
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=95.44 E-value=0.009 Score=34.88 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.+..- +.-..|||..+..++.+|+.....||.
T Consensus 19 ~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 55 (108)
T 2ckl_A 19 VLCGGYFIDA-TTIIECLHSFCKTCIVRYLETSKYCPI 55 (108)
T ss_dssp TTTSSBCSSE-EEETTTCCEEEHHHHHHHHTSCSBCTT
T ss_pred ccCChHHhCc-CEeCCCCChhhHHHHHHHHHhCCcCcC
Confidence 4554444332 222489999999999999999999997
No 29
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=95.35 E-value=0.0023 Score=35.21 Aligned_cols=36 Identities=11% Similarity=0.292 Sum_probs=26.8
Q ss_pred HHHHhhhhcccccccC-CCCCChHHHHHHHHhCC--CCCCC
Q psy17526 24 MLVFCLVSGLYSWCQG-CSHGGHLSHMQEWFMKN--NVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~-C~HggH~~h~~~Wf~~~--~~CP~ 61 (70)
.||.+.+..-++ +. |+|..+..++.+|+... ..||+
T Consensus 19 ~IC~~~~~~p~~--~~~CgH~fC~~Ci~~~~~~~~~~~CP~ 57 (74)
T 2yur_A 19 LICKDIMTDAVV--IPCCGNSYCDECIRTALLESDEHTCPT 57 (74)
T ss_dssp SSSCCCCTTCEE--CSSSCCEECTTHHHHHHHHSSSSCCSS
T ss_pred cCCChHHhCCeE--cCCCCCHHHHHHHHHHHHhcCCCcCCC
Confidence 455555544333 45 99999999999999875 68997
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.29 E-value=0.0035 Score=33.92 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=27.1
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHh---CCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM---KNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~---~~~~CP~ 61 (70)
.||.+.+....+ +.|+|..+..++.+|+. ....||+
T Consensus 24 ~IC~~~~~~~~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (73)
T 2ysl_A 24 PICLDILQKPVT--IDCGHNFCLKCITQIGETSCGFFKCPL 62 (73)
T ss_dssp TTTCSBCSSEEE--CTTCCEEEHHHHHHHCSSSCSCCCCSS
T ss_pred ccCCcccCCeEE--cCCCChhhHHHHHHHHHcCCCCCCCCC
Confidence 566555554333 38999999999999997 3568997
No 31
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.22 E-value=0.0059 Score=38.17 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=28.5
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~ 61 (70)
.||.+.+.. .+....|||..|..|+..|+.. ...||+
T Consensus 58 ~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 95 (165)
T 2ckl_B 58 PICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPT 95 (165)
T ss_dssp TTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTT
T ss_pred cccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCC
Confidence 566555544 2333589999999999999998 788998
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.20 E-value=0.0038 Score=34.30 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=27.6
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~ 61 (70)
.||.++++.-++ ..|||..+..++.+|+.. ...||+
T Consensus 12 ~IC~~~~~~Pv~--~~CgH~fc~~Ci~~~~~~~~~~CP~ 48 (78)
T 1t1h_A 12 PISLELMKDPVI--VSTGQTYERSSIQKWLDAGHKTCPK 48 (78)
T ss_dssp TTTSCCCSSEEE--ETTTEEEEHHHHHHHHTTTCCBCTT
T ss_pred CCccccccCCEE--cCCCCeecHHHHHHHHHHCcCCCCC
Confidence 455555544333 379999999999999998 789997
No 33
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.07 E-value=0.0029 Score=34.10 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=27.2
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+.+.. .-+.|+|..|.+++.+|+.....||+
T Consensus 19 ~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~ 53 (70)
T 2ecn_A 19 CICMDGRAD---LILPCAHSFCQKCIDKWSDRHRNCPI 53 (70)
T ss_dssp SSSCCSCCS---EEETTTEEECHHHHHHSSCCCSSCHH
T ss_pred eeCCcCccC---cccCCCCcccHHHHHHHHHCcCcCCC
Confidence 455444444 34679999999999999999999995
No 34
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.01 E-value=0.0067 Score=40.93 Aligned_cols=39 Identities=26% Similarity=0.576 Sum_probs=30.2
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC--CCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN--VCPTGCG 64 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~--~CP~gC~ 64 (70)
.+|.++|. .-..|.+|++..|..|+..||.... .||. |+
T Consensus 184 ~iC~~iv~-~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~-C~ 224 (238)
T 3nw0_A 184 NICHSLLI-QGQSCETCGIRMHLPCVAKYFQSNAEPRCPH-CN 224 (238)
T ss_dssp TTTCSBCS-SCEECSSSCCEECHHHHHHHTTTCSSCBCTT-TC
T ss_pred cchhhHHh-CCcccCccChHHHHHHHHHHHHhCCCCCCCC-CC
Confidence 45555554 2477999999999999999998754 8996 54
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.91 E-value=0.0061 Score=33.45 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhC------CCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK------NNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~------~~~CP~ 61 (70)
.||.+.++...+ +.|+|..+..++.+|+.. ...||.
T Consensus 23 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecv_A 23 PICLELLTQPLS--LDCGHSFCQACLTANHKKSMLDKGESSCPV 64 (85)
T ss_dssp TTTCSCCSSCBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTT
T ss_pred CCCCcccCCcee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCC
Confidence 566555544333 379999999999999988 788997
No 36
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=94.65 E-value=0.007 Score=35.72 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~ 61 (70)
.||.+.+..-.+ ..|||..+..++.+|+.. ...||+
T Consensus 27 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~ 63 (116)
T 1rmd_A 27 QICEHILADPVE--TSCKHLFCRICILRCLKVMGSYCPS 63 (116)
T ss_dssp TTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred CCCCcHhcCcEE--cCCCCcccHHHHHHHHhHCcCcCCC
Confidence 566666655444 589999999999999997 678997
No 37
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.48 E-value=0.0039 Score=34.15 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=27.1
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhC-------CCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-------NNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-------~~~CP~ 61 (70)
.||.+.++.-.+ +.|+|..+.+++.+|+.. ...||+
T Consensus 16 ~IC~~~~~~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~ 58 (79)
T 2egp_A 16 PICLELLTEPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPV 58 (79)
T ss_dssp TTTTEECSSCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS
T ss_pred cCCCcccCCeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCC
Confidence 456555544333 479999999999999987 568997
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.43 E-value=0.012 Score=34.17 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=26.1
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC---CCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN---VCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~---~CP~ 61 (70)
.||.+.++.-.+ ..|||..+..++.+|+.... .||+
T Consensus 25 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 63 (112)
T 1jm7_A 25 PICLELIKEPVS--TKCDHIFCKFCMLKLLNQKKGPSQCPL 63 (112)
T ss_dssp SSSCCCCSSCCB--CTTSCCCCSHHHHHHHHSSSSSCCCTT
T ss_pred cccChhhcCeEE--CCCCCHHHHHHHHHHHHhCCCCCCCcC
Confidence 344444433333 47999999999999998754 8997
No 39
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.39 E-value=0.017 Score=31.99 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.6
Q ss_pred cCCCCCChHHHHHHHHhCC---CCCCC
Q psy17526 38 QGCSHGGHLSHMQEWFMKN---NVCPT 61 (70)
Q Consensus 38 ~~C~HggH~~h~~~Wf~~~---~~CP~ 61 (70)
+.|+|..|..++.+|+... ..||+
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 61 (88)
T 2ct2_A 35 LHCGHTICRQCLEKLLASSINGVRCPF 61 (88)
T ss_dssp CSSSCEEEHHHHHHHHHHCSSCBCCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCCcCCCC
Confidence 4799999999999999986 78997
No 40
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.14 E-value=0.031 Score=30.51 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=27.0
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhC------CCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK------NNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~------~~~CP~ 61 (70)
.||.+.++.-.+ ..|+|..+..++.+|+.. ...||.
T Consensus 23 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecw_A 23 PICLELLKEPVS--ADCNHSFCRACITLNYESNRNTDGKGNCPV 64 (85)
T ss_dssp TTTCSCCSSCEE--CTTSCCBCHHHHHHHHHHSBCTTSCBCCTT
T ss_pred cCCChhhCccee--CCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 455554444332 469999999999999998 678997
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.99 E-value=0.043 Score=29.00 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.1
Q ss_pred cCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526 38 QGCSHGGHLSHMQEWFMKN-NVCPT 61 (70)
Q Consensus 38 ~~C~HggH~~h~~~Wf~~~-~~CP~ 61 (70)
..|||..+.+++.+|+.+. ..||+
T Consensus 24 ~~CgH~fC~~Ci~~~~~~~~~~CP~ 48 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CTTCCCEEHHHHHHHHHTTSSSCTT
T ss_pred CCCCCHhHHHHHHHHHHcCCCcCCC
Confidence 5899999999999998764 67997
No 42
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=93.89 E-value=0.016 Score=34.57 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=26.9
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN-NVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~-~~CP~ 61 (70)
.||.+.+..-.+ +.|||..+..++..|+... ..||+
T Consensus 56 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~ 92 (124)
T 3fl2_A 56 ICCQELVFRPIT--TVCQHNVCKDCLDRSFRAQVFSCPA 92 (124)
T ss_dssp TTTSSBCSSEEE--CTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred CcCChHHcCcEE--eeCCCcccHHHHHHHHhHCcCCCCC
Confidence 456555544333 3899999999999999864 48997
No 43
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=93.44 E-value=0.069 Score=28.71 Aligned_cols=28 Identities=29% Similarity=0.739 Sum_probs=22.1
Q ss_pred ccccccCCCC---CChHHHHHHHHhC--CCCCCC
Q psy17526 33 LYSWCQGCSH---GGHLSHMQEWFMK--NNVCPT 61 (70)
Q Consensus 33 l~~~C~~C~H---ggH~~h~~~Wf~~--~~~CP~ 61 (70)
+...| +|.+ -.|.++++.|+.. +..||+
T Consensus 20 l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~ 52 (60)
T 1vyx_A 20 RFRAC-GCTGELENVHRSCLSTWLTISRNTACQI 52 (60)
T ss_dssp CCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTT
T ss_pred eecCc-CCCCchhhhHHHHHHHHHHhCCCCccCC
Confidence 45555 5666 8899999999975 678997
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=93.37 E-value=0.023 Score=35.51 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=27.8
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC-CCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN-VCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~-~CP~ 61 (70)
.||.+.+..-.+ +.|+|..+..|+.+|+.... .||+
T Consensus 82 ~IC~~~~~~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~ 118 (150)
T 1z6u_A 82 VCCQELVYQPVT--TECFHNVCKDCLQRSFKAQVFSCPA 118 (150)
T ss_dssp TTTSSBCSSEEE--CTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred ecCChhhcCCEE--cCCCCchhHHHHHHHHHhCCCcCCC
Confidence 456555554444 68999999999999999764 8997
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.17 E-value=0.014 Score=34.69 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=27.7
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC-CCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN-VCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~-~CP~ 61 (70)
.||.+.++.-++ ..|||..+..++.+|+.... .||+
T Consensus 22 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~ 58 (118)
T 3hct_A 22 PICLMALREAVQ--TPCGHRFCKACIIKSIRDAGHKCPV 58 (118)
T ss_dssp TTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred CcCChhhcCeEE--CCcCChhhHHHHHHHHhhCCCCCCC
Confidence 566555554433 47999999999999998865 8997
No 46
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.10 E-value=0.024 Score=32.24 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.7
Q ss_pred CCCChHHHHHHHHhCC--CCCCC
Q psy17526 41 SHGGHLSHMQEWFMKN--NVCPT 61 (70)
Q Consensus 41 ~HggH~~h~~~Wf~~~--~~CP~ 61 (70)
.|..|.++|.+|+... ..||+
T Consensus 41 ~h~fH~~Cl~~Wl~~~~~~~Cpl 63 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSSDTRCCEL 63 (80)
T ss_dssp SCCEETTHHHHHHHHHCCSBCSS
T ss_pred CCeeCHHHHHHHHhhCCCCCCCC
Confidence 4999999999999885 48997
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=92.77 E-value=0.03 Score=31.51 Aligned_cols=37 Identities=11% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCC--CCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN--NVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~--~~CP~ 61 (70)
.||.+.+..-.+ -..|||.....++.+|+... ..||+
T Consensus 17 ~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~ 55 (92)
T 3ztg_A 17 LICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPT 55 (92)
T ss_dssp TTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTT
T ss_pred CCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcC
Confidence 566555554332 23399999999999999754 58997
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=90.43 E-value=0.017 Score=33.91 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~ 61 (70)
.||.+.+..-.+ +.|||..+..++.+|+.. ...||.
T Consensus 19 ~iC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~ 55 (115)
T 3l11_A 19 GICMEILVEPVT--LPCNHTLCKPCFQSTVEKASLCCPF 55 (115)
T ss_dssp TTTCSBCSSCEE--CTTSCEECHHHHCCCCCTTTSBCTT
T ss_pred ccCCcccCceeE--cCCCCHHhHHHHHHHHhHCcCCCCC
Confidence 456555544333 379999999999999987 678997
No 49
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.49 E-value=0.1 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=22.8
Q ss_pred CCCCCChHHHHHHHHhCC------CCCCC-CCC
Q psy17526 39 GCSHGGHLSHMQEWFMKN------NVCPT-GCG 64 (70)
Q Consensus 39 ~C~HggH~~h~~~Wf~~~------~~CP~-gC~ 64 (70)
.|||..-..++.+|+..+ ..||+ ||.
T Consensus 25 ~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~ 57 (94)
T 2yu4_A 25 VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCS 57 (94)
T ss_dssp SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCC
T ss_pred CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCc
Confidence 599999999999999874 48998 886
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=87.91 E-value=0.078 Score=32.74 Aligned_cols=36 Identities=8% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC-CCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN-VCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~-~CP~ 61 (70)
.||.++++.-+. ..|||.....++.+|+.... .||+
T Consensus 35 ~IC~~~~~~pv~--~~CgH~FC~~Ci~~~~~~~~~~CP~ 71 (141)
T 3knv_A 35 SACRNVLRRPFQ--AQCGHRYCSFCLASILSSGPQNCAA 71 (141)
T ss_dssp TTTCSBCSSEEE--CTTSCEEEHHHHHHHGGGSCEECHH
T ss_pred CCCChhhcCcEE--CCCCCccCHHHHHHHHhcCCCCCCC
Confidence 677666655543 58999999999999998754 7885
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=87.24 E-value=0.31 Score=35.23 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=27.3
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHh-CCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM-KNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~-~~~~CP~ 61 (70)
+||.+..+.. .-..|||..+..|+.+|.. ....||.
T Consensus 336 ~ICle~~~~p--v~lpCGH~FC~~Ci~~wl~~~~~~CP~ 372 (389)
T 2y1n_A 336 KICAENDKDV--KIEPCGHLMCTSCLTSWQESEGQGCPF 372 (389)
T ss_dssp TTTSSSBCCE--EEETTCCEECHHHHHHHHHHTCSBCTT
T ss_pred CccCcCCCCe--EEeCCCChhhHHHHHHHHhcCCCCCCC
Confidence 4554444332 3368999999999999999 6889997
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=86.51 E-value=0.11 Score=32.26 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN-NVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~-~~CP~ 61 (70)
.||.++++.-+. ..|||.....++.+|++.. ..||+
T Consensus 22 ~IC~~~~~~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~ 58 (170)
T 3hcs_A 22 PICLMALREAVQ--TPCGHRFCKACIIKSIRDAGHKCPV 58 (170)
T ss_dssp TTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred CCCChhhcCcEE--CCCCCHHHHHHHHHHHHhCCCCCCC
Confidence 567666655443 4799999999999999874 48997
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=85.94 E-value=0.23 Score=28.88 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=28.1
Q ss_pred HHHHhhhhcccccccCCC-CCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCS-HGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~-HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.++|+--++ ..|| |..-..++.+|+..+..||+
T Consensus 26 pI~~~~m~dPV~--~~cG~htf~r~cI~~~l~~~~~cP~ 62 (98)
T 1wgm_A 26 PIMSTLMCDPVV--LPSSRVTVDRSTIARHLLSDQTDPF 62 (98)
T ss_dssp TTTCSBCSSEEE--CTTTCCEEEHHHHHHHTTTSCBCTT
T ss_pred cCccccccCCeE--CCCCCeEECHHHHHHHHHhCCCCCC
Confidence 455555555443 4688 99999999999999999997
No 54
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=84.59 E-value=0.13 Score=37.19 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=18.5
Q ss_pred cccc--CCCCCChHHHHHHHHhC
Q psy17526 35 SWCQ--GCSHGGHLSHMQEWFMK 55 (70)
Q Consensus 35 ~~C~--~C~HggH~~h~~~Wf~~ 55 (70)
..|. .|+|..|.+|+.+||.+
T Consensus 327 k~C~n~~C~h~FH~~CL~kWLrs 349 (381)
T 3k1l_B 327 VSCDNAKCVLKCHAVCLEEWFKT 349 (381)
T ss_dssp BCCSCTTCCCCBCSGGGHHHHHH
T ss_pred ccccCCccCCccchHHHHHHHHh
Confidence 4576 89999999999999986
No 55
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=84.17 E-value=0.54 Score=26.35 Aligned_cols=36 Identities=11% Similarity=-0.011 Sum_probs=27.5
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.++|+--++ ..|||..-..++.+|+..+..||+
T Consensus 18 pI~~~~m~dPV~--~~cGhtf~r~~I~~~l~~~~~cP~ 53 (85)
T 2kr4_A 18 PLMDTLMTDPVR--LPSGTVMDRSIILRHLLNSPTDPF 53 (85)
T ss_dssp TTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred cccCchhcCCeE--CCCCCEECHHHHHHHHhcCCCCCC
Confidence 455555544433 358999999999999999999997
No 56
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=82.88 E-value=0.27 Score=28.47 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=12.0
Q ss_pred CcccCccCCCCCCcC
Q psy17526 1 MNAHSDRCQHGLGNF 15 (70)
Q Consensus 1 ~~~~C~~C~~~l~~~ 15 (70)
|...||.|+.+|...
T Consensus 1 M~~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 1 MEITCPVCHHALERN 15 (81)
T ss_dssp CCCCCSSSCSCCEEC
T ss_pred CCCCCCCCCCccccC
Confidence 778899999999543
No 57
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=77.73 E-value=0.88 Score=26.37 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=27.7
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.||.++|+--++ ..|||..-..++.+|+..+..||.
T Consensus 33 pI~~~~m~dPV~--~~cGhtf~r~~I~~~l~~~~~cP~ 68 (100)
T 2kre_A 33 PLMDTLMTDPVR--LPSGTIMDRSIILRHLLNSPTDPF 68 (100)
T ss_dssp TTTCSBCSSEEE--ETTTEEEEHHHHHHHTTSCSBCSS
T ss_pred cCccCcccCCeE--CCCCCEEchHHHHHHHHcCCCCCC
Confidence 455555554443 348999999999999999999997
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=76.62 E-value=0.42 Score=25.43 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=26.6
Q ss_pred HHHHhhhhcccccccCCCCC-ChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHG-GHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~Hg-gH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+..+...+.-..|||. .-.+++..|...+..||+
T Consensus 12 ~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPi 50 (64)
T 2vje_A 12 VICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPV 50 (64)
T ss_dssp TTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTT
T ss_pred CcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCC
Confidence 45544433333223479999 568999999999899997
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=75.40 E-value=0.46 Score=25.17 Aligned_cols=38 Identities=11% Similarity=-0.070 Sum_probs=27.0
Q ss_pred HHHHhhhhcccccccCCCCC-ChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHG-GHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~Hg-gH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+..+...+.-..|||. .-.+++..|.+....||.
T Consensus 11 ~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPi 49 (63)
T 2vje_B 11 SLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPI 49 (63)
T ss_dssp TTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTT
T ss_pred cccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCC
Confidence 45544333322333589998 789999999998889997
No 60
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=74.92 E-value=0.86 Score=24.22 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=21.4
Q ss_pred CCCCCChHHHHHHHHhCCCCCCC-CC
Q psy17526 39 GCSHGGHLSHMQEWFMKNNVCPT-GC 63 (70)
Q Consensus 39 ~C~HggH~~h~~~Wf~~~~~CP~-gC 63 (70)
.+||..=...+.+|++++..||+ |=
T Consensus 21 ~sG~~yer~~I~~~l~~~~~cP~t~~ 46 (61)
T 2bay_A 21 KSRTIFEKSLLEQYVKDTGNDPITNE 46 (61)
T ss_dssp TTTEEEEHHHHHHHHHHHSBCTTTCC
T ss_pred CCCcEEcHHHHHHHHHhCCCCcCCcC
Confidence 67888889999999999888997 53
No 61
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=74.56 E-value=0.88 Score=31.43 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCC--CCCCC-CCCc
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN--NVCPT-GCGH 65 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~--~~CP~-gC~c 65 (70)
.||.+.++--++ -..|||..-..++.+|+... ..||+ ||.-
T Consensus 185 PIcl~~f~DPVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~ 228 (267)
T 3htk_C 185 PITCKPYEAPLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQ 228 (267)
T ss_dssp TTTSSBCSSEEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSC
T ss_pred cCccCcccCCee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccC
Confidence 345444433332 25799999999999999874 57998 9864
No 62
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=71.63 E-value=1.8 Score=20.07 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=10.3
Q ss_pred CcccCccCCCCC
Q psy17526 1 MNAHSDRCQHGL 12 (70)
Q Consensus 1 ~~~~C~~C~~~l 12 (70)
|+..|++|+|+.
T Consensus 2 m~~~C~~C~k~V 13 (31)
T 1zfo_A 2 MNPNCARCGKIV 13 (31)
T ss_dssp CCCBCSSSCSBC
T ss_pred CCCcCCccCCEE
Confidence 677899999987
No 63
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.80 E-value=0.62 Score=27.25 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.2
Q ss_pred CCCCCChHHHHHHHHhCCCCCCC
Q psy17526 39 GCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 39 ~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
.|||..+..++.+|+. ..||+
T Consensus 40 ~CgH~fC~~Ci~~~~~--~~CP~ 60 (117)
T 1jm7_B 40 GCEHIFCSNCVSDCIG--TGCPV 60 (117)
T ss_dssp SSSCCBCTTTGGGGTT--TBCSS
T ss_pred CCCCHHHHHHHHHHhc--CCCcC
Confidence 7999999999999987 78987
No 64
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.27 E-value=1.9 Score=22.78 Aligned_cols=20 Identities=20% Similarity=-0.139 Sum_probs=16.2
Q ss_pred ccCccCCCCCCcCccccccc
Q psy17526 3 AHSDRCQHGLGNFGKLEGKI 22 (70)
Q Consensus 3 ~~C~~C~~~l~~~~~~C~~~ 22 (70)
..||+|+..++...|.|.++
T Consensus 15 ~iCpkC~a~~~~gaw~CrKC 34 (51)
T 3j21_g 15 YVCLRCGATNPWGAKKCRKC 34 (51)
T ss_dssp EECTTTCCEECTTCSSCSSS
T ss_pred ccCCCCCCcCCCCceecCCC
Confidence 46999999988777888773
No 65
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=66.89 E-value=1.5 Score=29.73 Aligned_cols=14 Identities=21% Similarity=0.544 Sum_probs=10.9
Q ss_pred hcccccccCCCCCC
Q psy17526 31 SGLYSWCQGCSHGG 44 (70)
Q Consensus 31 ~~l~~~C~~C~Hgg 44 (70)
.+-..||++|..+|
T Consensus 252 gR~t~~CP~CQ~~~ 265 (266)
T 1ee8_A 252 GRGTHFCPTCQGEG 265 (266)
T ss_dssp SCEEEECTTTTTCC
T ss_pred CCceEECCCCCCCC
Confidence 56677889888876
No 66
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=65.52 E-value=3.5 Score=21.33 Aligned_cols=36 Identities=11% Similarity=0.304 Sum_probs=18.5
Q ss_pred ccCccCCCCCCcCccccccch-HHHHhhhhcccccccCCCCC
Q psy17526 3 AHSDRCQHGLGNFGKLEGKIQ-MLVFCLVSGLYSWCQGCSHG 43 (70)
Q Consensus 3 ~~C~~C~~~l~~~~~~C~~~~-~iC~~~v~~l~~~C~~C~Hg 43 (70)
..||+|+..-... . ..+ ..-+++|. ++..|.+|+|.
T Consensus 10 ~~Cp~Cg~~~a~f--~--q~Q~RsaDE~mT-~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTY--T--QVQTRSADEPMT-TFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEE--E--EECSSSSSSCCE-EEEEESSSCCE
T ss_pred cCCCCCCCCEEEE--E--EecCcCCCCCce-EEEEcCCCCCe
Confidence 4688888644100 0 000 11134544 46678899884
No 67
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=64.24 E-value=5.6 Score=21.87 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.8
Q ss_pred CCCCCChHHHHHHHHhC-CCCCCC
Q psy17526 39 GCSHGGHLSHMQEWFMK-NNVCPT 61 (70)
Q Consensus 39 ~C~HggH~~h~~~Wf~~-~~~CP~ 61 (70)
.|||.....++..++.+ ...||.
T Consensus 32 ~CGH~fC~~Cl~~~~~~~~~~CP~ 55 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRTDENGLCPA 55 (78)
T ss_dssp TTSCCCCHHHHHHHTTSSCSBCTT
T ss_pred CCCCCcCHHHHHHHHhcCCCCCCC
Confidence 69999999999999865 567996
No 68
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=63.15 E-value=4.6 Score=24.88 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=8.7
Q ss_pred ccCccCCCCC
Q psy17526 3 AHSDRCQHGL 12 (70)
Q Consensus 3 ~~C~~C~~~l 12 (70)
.+||+||.-|
T Consensus 25 ~FCPeCgNmL 34 (133)
T 3qt1_I 25 RFCRDCNNML 34 (133)
T ss_dssp CBCTTTCCBC
T ss_pred eeCCCCCCEe
Confidence 4799999998
No 69
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=59.93 E-value=3.4 Score=21.49 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=10.5
Q ss_pred hhhhcccccccCCCCC
Q psy17526 28 CLVSGLYSWCQGCSHG 43 (70)
Q Consensus 28 ~~v~~l~~~C~~C~Hg 43 (70)
++|. ++..|.+|+|.
T Consensus 38 ep~T-~fy~C~~Cg~~ 52 (57)
T 1qyp_A 38 EPST-IFYKCTKCGHT 52 (57)
T ss_dssp CSSE-EEEEESSSCCE
T ss_pred CCCc-EEEEcCCCCCE
Confidence 4444 67779999884
No 70
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=58.96 E-value=2.6 Score=22.66 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=23.1
Q ss_pred HHHHhhhhcccccccCCCCC-ChHHHHHHHHhCCCCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHG-GHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~Hg-gH~~h~~~Wf~~~~~CP~ 61 (70)
.||.+..+...+ +.|||. ....++..| ..||+
T Consensus 28 ~iC~~~~~~~~~--~pCgH~~~C~~C~~~~----~~CP~ 60 (74)
T 4ic3_A 28 KICMDRNIAIVF--VPCGHLVTCKQCAEAV----DKCPM 60 (74)
T ss_dssp TTTSSSBCCEEE--ETTCCBCCCHHHHTTC----SBCTT
T ss_pred CCCCCCCCCEEE--cCCCChhHHHHhhhcC----ccCCC
Confidence 455544443332 479999 999999999 78887
No 71
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=58.44 E-value=1.8 Score=27.97 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=26.2
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN-NVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~-~~CP~ 61 (70)
.||.++|+.-++ ..|||..-..++..|+... ..||+
T Consensus 212 ~i~~~~~~dPv~--~~~gh~f~~~~i~~~~~~~~~~cP~ 248 (281)
T 2c2l_A 212 KISFELMREPCI--TPSGITYDRKDIEEHLQRVGHFNPV 248 (281)
T ss_dssp TTTCSBCSSEEE--CSSCCEEETTHHHHHHHHTCSSCTT
T ss_pred cCcCCHhcCCeE--CCCCCEECHHHHHHHHHHCCCCCcC
Confidence 455555554443 4589999999999999874 45997
No 72
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.10 E-value=4 Score=22.68 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=22.1
Q ss_pred cCCCCCChHHHHHHHHhC--------CCCCCC-CCCc
Q psy17526 38 QGCSHGGHLSHMQEWFMK--------NNVCPT-GCGH 65 (70)
Q Consensus 38 ~~C~HggH~~h~~~Wf~~--------~~~CP~-gC~c 65 (70)
..|+|....+++++++.. .-.||. +|.-
T Consensus 24 ~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~ 60 (94)
T 1wim_A 24 AQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp TTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred CCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence 369999999999999975 136997 7753
No 73
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=57.20 E-value=2.9 Score=26.86 Aligned_cols=22 Identities=5% Similarity=-0.256 Sum_probs=16.3
Q ss_pred cccCccCCCCCC--cC-ccccccch
Q psy17526 2 NAHSDRCQHGLG--NF-GKLEGKIQ 23 (70)
Q Consensus 2 ~~~C~~C~~~l~--~~-~~~C~~~~ 23 (70)
|.+||+|+|.+- .. .|.|.++.
T Consensus 42 Y~ACp~CnKKV~~~~~g~~~CekC~ 66 (172)
T 3u50_C 42 YYRCTCQGKSVLKYHGDSFFCESCQ 66 (172)
T ss_dssp EEECTTSCCCEEEETTTEEEETTTT
T ss_pred ehhchhhCCEeeeCCCCeEECCCCC
Confidence 789999999993 22 37787754
No 74
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.91 E-value=7 Score=23.12 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=8.9
Q ss_pred ccCccCCCCC
Q psy17526 3 AHSDRCQHGL 12 (70)
Q Consensus 3 ~~C~~C~~~l 12 (70)
.+||+||..|
T Consensus 5 ~FCp~Cgn~L 14 (113)
T 3h0g_I 5 QYCIECNNML 14 (113)
T ss_dssp CCCSSSCCCC
T ss_pred eeCcCCCCEe
Confidence 4799999999
No 75
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=49.79 E-value=4.9 Score=25.84 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=26.6
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN-NVCPT 61 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~-~~CP~ 61 (70)
.||.++|+--++. .|||..--.++..|+..+ ..||+
T Consensus 110 PI~~elm~DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~ 146 (179)
T 2f42_A 110 KISFELMREPCIT--PSGITYDRKDIEEHLQRVGHFDPV 146 (179)
T ss_dssp TTTCSBCSSEEEC--TTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred cCccccCCCCeEC--CCCCEECHHHHHHHHHhCCCCCCC
Confidence 4555555554433 689999999999999874 46997
No 76
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=47.40 E-value=8.4 Score=24.64 Aligned_cols=16 Identities=13% Similarity=0.530 Sum_probs=11.8
Q ss_pred HhhhhcccccccCCCCC
Q psy17526 27 FCLVSGLYSWCQGCSHG 43 (70)
Q Consensus 27 ~~~v~~l~~~C~~C~Hg 43 (70)
+++|. +|+.|.+|+|-
T Consensus 159 DE~mt-~f~~C~~C~~~ 174 (178)
T 3po3_S 159 AAPLT-TFCTCEACGNR 174 (178)
T ss_dssp TSCCC-CCEEETTTCCE
T ss_pred CCCCc-EEEEcCCCCCe
Confidence 56666 56779999984
No 77
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=42.69 E-value=7 Score=24.70 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=16.4
Q ss_pred CcccCcc--CCCCCCc---Cccccccch
Q psy17526 1 MNAHSDR--CQHGLGN---FGKLEGKIQ 23 (70)
Q Consensus 1 ~~~~C~~--C~~~l~~---~~~~C~~~~ 23 (70)
+|.+||+ |+|.+.. ..|.|.++.
T Consensus 42 ~Y~aC~~~~CnKKv~~~~~g~~~CekC~ 69 (181)
T 1l1o_C 42 MYQACPTQDCNKKVIDQQNGLYRCEKCD 69 (181)
T ss_dssp EEEBCCSTTCCCBCEEETTTEEEETTTT
T ss_pred EECCCCchhcCCccccCCCCeEECCCCC
Confidence 3789999 9999832 237787743
No 78
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=41.24 E-value=9.8 Score=22.81 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=21.9
Q ss_pred cccCccCCCCCCcCcccccc-chHHHHhhhhcccccccCCCCC
Q psy17526 2 NAHSDRCQHGLGNFGKLEGK-IQMLVFCLVSGLYSWCQGCSHG 43 (70)
Q Consensus 2 ~~~C~~C~~~l~~~~~~C~~-~~~iC~~~v~~l~~~C~~C~Hg 43 (70)
++.|.+|+..|-+.. .+.- .. ......+.+-|+.|||.
T Consensus 65 R~~Ck~C~s~LiPG~-t~~vri~---~~~~~~vv~tCl~Cg~~ 103 (120)
T 1x0t_A 65 RRYCKRCHTFLIPGV-NARVRLR---TKRMPHVVITCLECGYI 103 (120)
T ss_dssp TSBCTTTCCBCCBTT-TEEEEEE---CSSSCEEEEEETTTCCE
T ss_pred HHhccCCCCEeECCC-ceEEEEe---cCCccEEEEECCCCCCE
Confidence 578999999883322 2322 11 00012467779999984
No 79
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=39.46 E-value=6.4 Score=22.46 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=13.0
Q ss_pred ccCccCCCCC---CcCc-ccccc
Q psy17526 3 AHSDRCQHGL---GNFG-KLEGK 21 (70)
Q Consensus 3 ~~C~~C~~~l---~~~~-~~C~~ 21 (70)
-.||.||+.+ +..+ |.|+.
T Consensus 28 y~Cp~CG~~~v~r~atGiW~C~~ 50 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGTGIWQCSY 50 (83)
T ss_dssp EECSSSCCEEEEEEETTEEEETT
T ss_pred CcCCCCCCcceeccCCCeEECCC
Confidence 3699999977 3333 67766
No 80
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.68 E-value=7.9 Score=19.94 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.2
Q ss_pred hhhhcccccccCCCCC
Q psy17526 28 CLVSGLYSWCQGCSHG 43 (70)
Q Consensus 28 ~~v~~l~~~C~~C~Hg 43 (70)
..|.++.-+|+.||.+
T Consensus 13 ~kv~~~~k~CP~CG~~ 28 (50)
T 3j20_Y 13 GKVIRKNKFCPRCGPG 28 (50)
T ss_dssp SCEECSSEECSSSCSS
T ss_pred CEEEEecccCCCCCCc
Confidence 4677888999999886
No 81
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=34.65 E-value=15 Score=21.86 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=9.4
Q ss_pred ccCccCCCCCC
Q psy17526 3 AHSDRCQHGLG 13 (70)
Q Consensus 3 ~~C~~C~~~l~ 13 (70)
.+||.||.-|.
T Consensus 5 ~FCp~CgnlL~ 15 (122)
T 1twf_I 5 RFCRDCNNMLY 15 (122)
T ss_dssp CBCSSSCCBCE
T ss_pred CcccccCccCc
Confidence 58999999884
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=34.40 E-value=3.7 Score=23.81 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=26.5
Q ss_pred cCccccccch--HHHHhhh-hcccccccCCCCCChHHHHH
Q psy17526 14 NFGKLEGKIQ--MLVFCLV-SGLYSWCQGCSHGGHLSHMQ 50 (70)
Q Consensus 14 ~~~~~C~~~~--~iC~~~v-~~l~~~C~~C~HggH~~h~~ 50 (70)
+..|.|..+. .+|.+.- ....+.|-.|.-+.|..++.
T Consensus 46 ~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 46 RAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ 85 (111)
T ss_dssp STTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSS
T ss_pred ccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcC
Confidence 4458887764 6675443 24578899999999998875
No 83
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=34.23 E-value=11 Score=22.70 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=21.5
Q ss_pred cccCccCCCCCCcCcccccc-chHHHHhhhhcccccccCCCCC
Q psy17526 2 NAHSDRCQHGLGNFGKLEGK-IQMLVFCLVSGLYSWCQGCSHG 43 (70)
Q Consensus 2 ~~~C~~C~~~l~~~~~~C~~-~~~iC~~~v~~l~~~C~~C~Hg 43 (70)
++.|.+|+..|-+.. .+.- .. ......+.+-|+.|||.
T Consensus 60 R~~Ck~C~s~LIPG~-t~~vri~---~~~k~~vv~tCl~Cg~~ 98 (123)
T 2k3r_A 60 RRYCKKCHAFLVPGI-NARVRLR---QKRMPHIVVKCLECGHI 98 (123)
T ss_dssp TSBCTTTCCBCCBTT-TEEEEEE---CSSSCEEEEEETTTTEE
T ss_pred HHhccCCCCEeECCC-ceEEEEe---cCCccEEEEECCCCCCE
Confidence 578999999883321 2322 11 00112467779999874
No 84
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.25 E-value=17 Score=18.97 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=8.8
Q ss_pred cccCccCCCCCC
Q psy17526 2 NAHSDRCQHGLG 13 (70)
Q Consensus 2 ~~~C~~C~~~l~ 13 (70)
+-.||+|++...
T Consensus 12 ~~~CPrCn~~f~ 23 (49)
T 2e72_A 12 RKICPRCNAQFR 23 (49)
T ss_dssp CCCCTTTCCCCS
T ss_pred ceeCCccccccc
Confidence 457888888764
No 85
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=33.25 E-value=18 Score=18.90 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=8.3
Q ss_pred cccCccCCCCC
Q psy17526 2 NAHSDRCQHGL 12 (70)
Q Consensus 2 ~~~C~~C~~~l 12 (70)
+..||+||..+
T Consensus 18 ~~fCPkCG~~~ 28 (55)
T 2k4x_A 18 HRFCPRCGPGV 28 (55)
T ss_dssp SCCCTTTTTTC
T ss_pred cccCcCCCCce
Confidence 46789998755
No 86
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=32.62 E-value=8.1 Score=19.08 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=9.2
Q ss_pred ccCccCCCCCCc
Q psy17526 3 AHSDRCQHGLGN 14 (70)
Q Consensus 3 ~~C~~C~~~l~~ 14 (70)
..|++||+.++.
T Consensus 10 ~~C~~C~~~i~~ 21 (39)
T 2i5o_A 10 VPCEKCGSLVPV 21 (39)
T ss_dssp EECTTTCCEEEG
T ss_pred cccccccCcCCc
Confidence 469999998764
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.84 E-value=16 Score=21.82 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=14.7
Q ss_pred CcccCccCCCCCCcCc--cccccc
Q psy17526 1 MNAHSDRCQHGLGNFG--KLEGKI 22 (70)
Q Consensus 1 ~~~~C~~C~~~l~~~~--~~C~~~ 22 (70)
|...||.|+.+|...+ ..|+.+
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C 54 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSC 54 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTT
T ss_pred ccccCccCCCcceecCCEEECccc
Confidence 6778999999994332 236553
No 88
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=31.33 E-value=13 Score=25.61 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=17.7
Q ss_pred cCccCCCCCCcCccccccchHHHHhhh--hcccccccCCCCCChH
Q psy17526 4 HSDRCQHGLGNFGKLEGKIQMLVFCLV--SGLYSWCQGCSHGGHL 46 (70)
Q Consensus 4 ~C~~C~~~l~~~~~~C~~~~~iC~~~v--~~l~~~C~~C~HggH~ 46 (70)
-|++||.++.+.. .. .+..+||+.|..--|.
T Consensus 253 pC~~CGt~I~~~~------------~g~~gRsTyfCp~~~~~~~~ 285 (287)
T 3w0f_A 253 NCDQCHSKITVCR------------FGENSRMTYFCPHCQKHHHH 285 (287)
T ss_dssp BCTTTCCBCEEEC------------SSTTCCCEEECTTTSCC---
T ss_pred CCCCCCCEEEEEE------------ecCCCCCEEECCCccccccc
Confidence 5777777764431 11 3667788888755443
No 89
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=29.30 E-value=15 Score=24.85 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=6.6
Q ss_pred cCccCCCCCC
Q psy17526 4 HSDRCQHGLG 13 (70)
Q Consensus 4 ~C~~C~~~l~ 13 (70)
-|++||.++.
T Consensus 247 pC~~CG~~I~ 256 (273)
T 3u6p_A 247 PCKRCGTPIE 256 (273)
T ss_dssp BCTTTCCBCE
T ss_pred CCCCCCCeEE
Confidence 4777777663
No 90
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=29.07 E-value=15 Score=24.59 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=6.7
Q ss_pred cCccCCCCCC
Q psy17526 4 HSDRCQHGLG 13 (70)
Q Consensus 4 ~C~~C~~~l~ 13 (70)
-|++||.++.
T Consensus 236 pC~~CG~~I~ 245 (262)
T 1k3x_A 236 PCERCGSIIE 245 (262)
T ss_dssp BCTTTCCBCE
T ss_pred CCCCCCCEeE
Confidence 4777777773
No 91
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=28.63 E-value=11 Score=19.28 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=9.1
Q ss_pred cccCccCCCCCC
Q psy17526 2 NAHSDRCQHGLG 13 (70)
Q Consensus 2 ~~~C~~C~~~l~ 13 (70)
|-.|..||||+.
T Consensus 17 YRvC~~CgkPi~ 28 (44)
T 2lo3_A 17 YRVCEKCGKPLA 28 (44)
T ss_dssp EEECTTTCCEEE
T ss_pred chhhcccCCcch
Confidence 456888999874
No 92
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=28.48 E-value=16 Score=24.60 Aligned_cols=26 Identities=15% Similarity=0.455 Sum_probs=14.4
Q ss_pred cCccCCCCCCcCccccccchHHHHhhhhcccccccCCC
Q psy17526 4 HSDRCQHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCS 41 (70)
Q Consensus 4 ~C~~C~~~l~~~~~~C~~~~~iC~~~v~~l~~~C~~C~ 41 (70)
-|++||.++.+.. ...+-..||++|.
T Consensus 244 pC~~CG~~I~~~~------------~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 244 KCSRCGAEIQKIK------------VAGRGTHFCPVCQ 269 (271)
T ss_dssp BCTTTCCBCEEEE------------ETTEEEEECTTTS
T ss_pred CCCCCCCEeeEEE------------ECCCceEECCCCC
Confidence 4777777764331 2244556666665
No 93
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.25 E-value=17 Score=21.32 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=9.6
Q ss_pred cccCccCCCCC
Q psy17526 2 NAHSDRCQHGL 12 (70)
Q Consensus 2 ~~~C~~C~~~l 12 (70)
+|.||+|+++-
T Consensus 8 ~tyC~~C~kHt 18 (94)
T 3j21_j 8 RTYCPFCKKHT 18 (94)
T ss_dssp EECCTTTTSCE
T ss_pred eecCcCCCCCc
Confidence 68999999887
No 94
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.84 E-value=7.6 Score=19.54 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=15.7
Q ss_pred cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526 38 QGCSHGGHLSHMQEWFMKNNVCPT 61 (70)
Q Consensus 38 ~~C~HggH~~h~~~Wf~~~~~CP~ 61 (70)
+.|+|..+..++.+| ...||+
T Consensus 22 l~CgH~fC~~Ci~~~---~~~CP~ 42 (56)
T 1bor_A 22 LPCLHTLCSGCLEAS---GMQCPI 42 (56)
T ss_dssp STTSCCSBTTTCSSS---SSSCSS
T ss_pred cCCCCcccHHHHccC---CCCCCc
Confidence 568888888888773 557886
No 95
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=27.26 E-value=17 Score=24.46 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=6.9
Q ss_pred cCccCCCCCCc
Q psy17526 4 HSDRCQHGLGN 14 (70)
Q Consensus 4 ~C~~C~~~l~~ 14 (70)
-|++||.++.+
T Consensus 242 pC~~CG~~I~~ 252 (268)
T 1k82_A 242 PCRVCGTPIVA 252 (268)
T ss_dssp BCTTTCCBCEE
T ss_pred CCCCCCCEeeE
Confidence 47777777643
No 96
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=26.59 E-value=3.9 Score=24.13 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=23.1
Q ss_pred ccccccch--HHHHhhh-hcccccccCCCCCChHHHHH
Q psy17526 16 GKLEGKIQ--MLVFCLV-SGLYSWCQGCSHGGHLSHMQ 50 (70)
Q Consensus 16 ~~~C~~~~--~iC~~~v-~~l~~~C~~C~HggH~~h~~ 50 (70)
.|+|..+. .+|...- .+..+.|-.|..+.|..++.
T Consensus 52 ~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 52 KWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp TCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSS
T ss_pred ccCccccCccCcccccCCCCceEEcCCCCccccccccC
Confidence 46666653 5665432 45677888888888887765
No 97
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=26.32 E-value=29 Score=16.03 Aligned_cols=12 Identities=42% Similarity=1.312 Sum_probs=7.7
Q ss_pred CCCCCCCCCccc
Q psy17526 56 NNVCPTGCGHYC 67 (70)
Q Consensus 56 ~~~CP~gC~c~C 67 (70)
..+||+||.=+|
T Consensus 5 tgtcpsgcsgdc 16 (31)
T 2hm3_A 5 TGTCPSGCSGDC 16 (31)
T ss_dssp --CCCTTCCGGG
T ss_pred cccCCCCcCccc
Confidence 357999887554
No 98
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=25.23 E-value=22 Score=20.10 Aligned_cols=27 Identities=11% Similarity=-0.070 Sum_probs=22.9
Q ss_pred HHHHhhhhcccccccCCCCCChHHHHH
Q psy17526 24 MLVFCLVSGLYSWCQGCSHGGHLSHMQ 50 (70)
Q Consensus 24 ~iC~~~v~~l~~~C~~C~HggH~~h~~ 50 (70)
.+|.+...+++..|..|.-..|..++.
T Consensus 51 ~~C~~~~~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 51 DKCEEEGTIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp TTTSCCCCSCEEECTTTCCCCCHHHHH
T ss_pred CCCCCcCCCcEEEcCCCCCeEcHHhcC
Confidence 566677789999999999999999875
No 99
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=24.69 E-value=34 Score=16.09 Aligned_cols=8 Identities=63% Similarity=1.460 Sum_probs=5.9
Q ss_pred CCCCC-CCC
Q psy17526 57 NVCPT-GCG 64 (70)
Q Consensus 57 ~~CP~-gC~ 64 (70)
..||+ ||+
T Consensus 2 ~~CPtpGC~ 10 (31)
T 2jx1_A 2 LKCPTPGCD 10 (31)
T ss_dssp CSCSCTTCC
T ss_pred CcCCCCCcc
Confidence 46898 886
No 100
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.58 E-value=42 Score=17.53 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=13.7
Q ss_pred ccCccCCCCCCcCcccccc
Q psy17526 3 AHSDRCQHGLGNFGKLEGK 21 (70)
Q Consensus 3 ~~C~~C~~~l~~~~~~C~~ 21 (70)
..||+|+.++.+.+ -|..
T Consensus 7 k~CP~C~~~Iek~~-GCnh 24 (60)
T 1wd2_A 7 KECPKCHVTIEKDG-GCNH 24 (60)
T ss_dssp CCCTTTCCCCSSCC-SCCS
T ss_pred eECcCCCCeeEeCC-CCCc
Confidence 46999999998765 4655
No 101
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=21.84 E-value=32 Score=20.93 Aligned_cols=11 Identities=9% Similarity=0.289 Sum_probs=9.5
Q ss_pred cccCccCCCCC
Q psy17526 2 NAHSDRCQHGL 12 (70)
Q Consensus 2 ~~~C~~C~~~l 12 (70)
..+||+||+++
T Consensus 3 ~~~C~~CG~~~ 13 (189)
T 3cng_A 3 MKFCSQCGGEV 13 (189)
T ss_dssp CCBCTTTCCBC
T ss_pred cccCchhCCcc
Confidence 35899999999
No 102
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=21.70 E-value=33 Score=15.89 Aligned_cols=12 Identities=33% Similarity=0.864 Sum_probs=10.2
Q ss_pred ccccCCCCCChH
Q psy17526 35 SWCQGCSHGGHL 46 (70)
Q Consensus 35 ~~C~~C~HggH~ 46 (70)
..|.+|+..||.
T Consensus 20 ~~C~~Cg~~GH~ 31 (37)
T 2bl6_A 20 KVCFKCKQPGHF 31 (37)
T ss_dssp TTCSSCCCTTGG
T ss_pred CeEccCCCcCCc
Confidence 468999999997
No 103
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=21.69 E-value=19 Score=21.35 Aligned_cols=11 Identities=18% Similarity=0.604 Sum_probs=8.9
Q ss_pred cccCccCCCCC
Q psy17526 2 NAHSDRCQHGL 12 (70)
Q Consensus 2 ~~~C~~C~~~l 12 (70)
+..|++|+|++
T Consensus 70 ~~~C~nC~R~v 80 (99)
T 3mhs_C 70 YIHCENCGRDV 80 (99)
T ss_dssp EEECTTTCCEE
T ss_pred eEECCCCCCCc
Confidence 45799999887
No 104
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.97 E-value=14 Score=19.96 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=25.0
Q ss_pred Cccccccch-HHHHhh-hhcccccccCCCCCChHHHHH
Q psy17526 15 FGKLEGKIQ-MLVFCL-VSGLYSWCQGCSHGGHLSHMQ 50 (70)
Q Consensus 15 ~~~~C~~~~-~iC~~~-v~~l~~~C~~C~HggH~~h~~ 50 (70)
..|+|..+. .+|... -.+..+.|-.|.-+.|..++.
T Consensus 12 ~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD 49 (70)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSS
T ss_pred CCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCC
Confidence 346676654 566532 246678899999999998876
No 105
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.93 E-value=37 Score=23.30 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=9.4
Q ss_pred cccCccCCC-CC
Q psy17526 2 NAHSDRCQH-GL 12 (70)
Q Consensus 2 ~~~C~~C~~-~l 12 (70)
++.||+||. +|
T Consensus 34 n~yCPnCG~~~l 45 (257)
T 4esj_A 34 QSYCPNCGNNPL 45 (257)
T ss_dssp HCCCTTTCCSSC
T ss_pred CCcCCCCCChhh
Confidence 578999999 67
No 106
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=20.41 E-value=15 Score=21.51 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=9.1
Q ss_pred cccCccCCCCC
Q psy17526 2 NAHSDRCQHGL 12 (70)
Q Consensus 2 ~~~C~~C~~~l 12 (70)
+|.||+|+++-
T Consensus 8 ~tyCp~C~kHt 18 (92)
T 1vq8_3 8 NTYCPHCNEHQ 18 (92)
T ss_dssp EEEETTTTEEE
T ss_pred cccCCCCCCCc
Confidence 57899998876
No 107
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=20.18 E-value=21 Score=21.04 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=16.7
Q ss_pred cccccccCCCCCCh----HHHHHHHHhC
Q psy17526 32 GLYSWCQGCSHGGH----LSHMQEWFMK 55 (70)
Q Consensus 32 ~l~~~C~~C~HggH----~~h~~~Wf~~ 55 (70)
.+| .|+.|||.|- ..|+.+.|++
T Consensus 35 ~~W-~CL~CG~vgCgr~~~~HA~~H~~~ 61 (109)
T 3c5k_A 35 ENW-VCLSCYQVYCGRYINGHMLQHHGN 61 (109)
T ss_dssp SEE-EETTTCCEEECTTTTCHHHHHHHH
T ss_pred Cee-eeeecCccccCCCcChHHHHHhcc
Confidence 444 4999999865 5777777765
No 108
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.02 E-value=32 Score=22.13 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=17.3
Q ss_pred cccccCCCCCChHHHHHHHHhCCCCCCCCCCccccC
Q psy17526 34 YSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCES 69 (70)
Q Consensus 34 ~~~C~~C~HggH~~h~~~Wf~~~~~CP~gC~c~C~~ 69 (70)
...|.+||+. |.. .....||+ |+..=.+
T Consensus 171 ~~~C~~CG~i-~~g------~~p~~CP~-C~~~k~~ 198 (202)
T 1yuz_A 171 FHLCPICGYI-HKG------EDFEKCPI-CFRPKDT 198 (202)
T ss_dssp EEECSSSCCE-EES------SCCSBCTT-TCCBGGG
T ss_pred EEEECCCCCE-EcC------cCCCCCCC-CCCChHH
Confidence 4569999988 221 23358998 6654333
No 109
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.00 E-value=36 Score=19.83 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=7.7
Q ss_pred cCccCCCCC
Q psy17526 4 HSDRCQHGL 12 (70)
Q Consensus 4 ~C~~C~~~l 12 (70)
.||.||.+.
T Consensus 92 ~CP~Cgs~~ 100 (119)
T 2kdx_A 92 VCEKCHSKN 100 (119)
T ss_dssp CCSSSSSCC
T ss_pred cCccccCCC
Confidence 799999885
Done!