RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17526
         (70 letters)



>d3lyna_ a.19.1.1 (A:) Lysin {Green abalone (Haliotis fulgens)
          [TaxId: 6456]}
          Length = 122

 Score = 25.9 bits (57), Expect = 0.29
 Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 33 LYSWCQGCSHGGHLSHMQEWFM 54
          L +W +   HG  L++ Q+  +
Sbjct: 21 LTAWLR--VHGRRLTNNQKKTL 40


>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
          [TaxId: 4530]}
          Length = 55

 Score = 25.2 bits (55), Expect = 0.31
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 36 WCQGCSHGGHLSHMQEWFMKNNVCPT 61
          +   C HG H   +  W   ++ CP 
Sbjct: 23 FLPRCGHGFHAECVDMWLGSHSTCPL 48


>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
          C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 148

 Score = 24.4 bits (53), Expect = 1.1
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 9  QHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGGH 45
          ++ L  +  L+G I   V      + +      +GG 
Sbjct: 9  KYDL-KYIGLDGNIACFVNGAGLAMATCDIIFLNGGK 44


>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
          C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 24.0 bits (52), Expect = 1.5
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 9  QHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGGHLS 47
          Q  L N+  L+G I  +V      + +      HGG  +
Sbjct: 9  QWEL-NYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPA 46


>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
          ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 88

 Score = 23.6 bits (50), Expect = 2.2
 Identities = 7/25 (28%), Positives = 9/25 (36%)

Query: 37 CQGCSHGGHLSHMQEWFMKNNVCPT 61
             C+H  H   +  W     VCP 
Sbjct: 54 WGVCNHAFHFHCISRWLKTRQVCPL 78


>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
          herpesvirus 1 [TaxId: 10326]}
          Length = 68

 Score = 22.2 bits (47), Expect = 4.9
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 40 CSHGGHLSHMQEWFMKNNVCPT 61
          C H      +  W  +N  CP 
Sbjct: 24 CLHAFCYVCITRWIRQNPTCPL 45


>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 279

 Score = 22.6 bits (48), Expect = 6.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 43  GGHLSHMQEWFMKN 56
           G HL   +EWF  +
Sbjct: 260 GDHLQLSEEWFYAH 273


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.519 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 293,376
Number of extensions: 10690
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 20
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)