BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17528
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 95/252 (37%), Gaps = 53/252 (21%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRL 108
+T+ +TGATGFLG LV +LLR ++I L+R +R+ F+ + +R
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLR- 132
Query: 109 ECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEE 168
+F + AD++++V G GL
Sbjct: 133 -------------------HFKELA-----------ADRLEVVAGDKSEPDLGLDQPXWR 162
Query: 169 LLISQTTIIFHIAATVR-FDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNC 227
L +I AA V F H + NV GT ++ +A K LK F +VSTA
Sbjct: 163 RLAETVDLIVDSAAXVNAFPYH--ELFGPNVAGTAELIRIALTTK-LKPFTYVSTAD--- 216
Query: 228 DRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287
+ P FT + +D + + GG Y +K E L+R+
Sbjct: 217 ----VGAAIEPSAFTED---------ADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREA 263
Query: 288 GH--ELPICVLR 297
LP+ V R
Sbjct: 264 NDLCALPVAVFR 275
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIR------TRGSTSITQRVYNYFNDAVF 103
I ITGATG LG ++E L++ P +I+ ++R + IT R +Y ++A
Sbjct: 2 IAITGATGQLGHYVIESLMKTVP-ASQIVAIVRNPAKAQALAAQGITVRQADYGDEAAL 59
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(H)
Length = 287
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT--RGSTSITQRV 94
+I +TGATG LG L+++ LL+ P +II ++R + ST Q V
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKASTLADQGV 47
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of
Triphenylmethane Dyes By Citrobacter Sp.
Triphenylmethane Reductase
Length = 287
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT--RGSTSITQRV 94
+I +TGATG LG L+++ LL+ P +II ++R + ST Q V
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKASTLADQGV 47
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAV 102
Q +QTI ITG TG G V K+L +KII+ R S + FND
Sbjct: 16 QNMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRDELKQS---EMAMEFNDP- 70
Query: 103 FDRMR--------LECPNYA-DKVDIGI 121
RMR LE NYA + VDI I
Sbjct: 71 --RMRFFIGDVRDLERLNYALEGVDICI 96
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST 88
++QTI ITG GF+GS L P+ K+++L + R +T
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNT 49
>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph
Length = 353
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 48 DQTIFITGATGFLGSLL--VEKLLRC------CPQIRKIILLIRTRGSTSITQRVYNYFN 99
+QT+ ++GA G GSL + LL C C K + L G + NY
Sbjct: 157 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA----AVNYKT 212
Query: 100 DAVFDRMRLECPN----YADKVDIGITHRVYNYFND 131
V +++R CP Y D V I++ V + N+
Sbjct: 213 GNVAEQLREACPGGVDVYFDNVGGDISNAVISQMNE 248
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYAESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYAESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLR 70
+ +T+ +TGA+GF+GS LV +LL
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLE 27
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT--RGSTSITQRV 94
+I +TGATG LG L+++ L P +II ++R + ST Q V
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVPA-SQIIAIVRNVEKASTLADQGV 47
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT--RGSTSITQRV 94
+I +TGATG LG L+++ L P +II ++R + ST Q V
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVPA-SQIIAIVRNVEKASTLADQGV 47
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 265 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD--F 322
Query: 104 DRM 106
+ M
Sbjct: 323 EEM 325
>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And 15-Keto-Pge2
pdb|2ZB7|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph And Nicotinamide
pdb|2ZB8|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And Indomethacin
Length = 357
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 48 DQTIFITGATGFLGS--------LLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFN 99
++T+ ++GA G GS L +++ C K ILL G + NY
Sbjct: 161 NKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDA----AINYKK 216
Query: 100 DAVFDRMRLECPN----YADKVDIGITHRVYNYFND 131
D V +++R CP Y D V I+ V + N+
Sbjct: 217 DNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNE 252
>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
18beta-Glycyrrhetinic Acid
pdb|2VNA|A Chain A, Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (
Zadh1)
pdb|2W98|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
pdb|2W98|B Chain B, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
Length = 357
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 48 DQTIFITGATGFLGS--------LLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFN 99
++T+ ++GA G GS L +++ C K ILL G + NY
Sbjct: 156 NKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDA----AINYKK 211
Query: 100 DAVFDRMRLECPN----YADKVDIGITHRVYNYFND 131
D V +++R CP Y D V I+ V + N+
Sbjct: 212 DNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNE 247
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVF 103
F+KD I TGATG +LLV + + C + IL + + Y++ D F
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEEXRAQLLRNAYSWGMD--F 335
Query: 104 DRM 106
+ M
Sbjct: 336 EEM 338
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS 89
I +TG GF+GS LV+KL+ ++ + ++ R G ++
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSA 41
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 145 ADKVDIVCGQLEADTFGLSARDE-ELLISQTTI--IFHIAA--TVRFDEHIRTAYNINVK 199
+D V G ++ T +S RDE + + + +I IFH+A + + ++ AY +N+
Sbjct: 31 SDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMN 90
Query: 200 GTQTILALAKRMK 212
GT IL AK+ +
Sbjct: 91 GTYNILEAAKQHR 103
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 145 ADKVDIVCGQLEADTFGLSARDE-ELLISQTTI--IFHIAA--TVRFDEHIRTAYNINVK 199
+D V G ++ T +S RDE + + + +I IFH+A + + ++ AY +N+
Sbjct: 31 SDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMN 90
Query: 200 GTQTILALAKRMK 212
GT IL AK+ +
Sbjct: 91 GTYNILEAAKQHR 103
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 93 RVYNYFNDAVFDRMRLECPNYADKVDIGITHRV-YNYFNDAVFDRMRLECPNYADKVDIV 151
++Y++F D + +EC + D I HR+ +N + AV + L Y K +IV
Sbjct: 100 KLYDFFEDKRNYYLVMECYKGGELFD-EIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIV 158
Query: 152 CGQLEADTFGLSARDEELLISQTTIIFHIAATV----RFDEHIRTAYNI 196
L+ + L +++++ LI + F ++A + E + TAY I
Sbjct: 159 HRDLKPENLLLESKEKDALIK--IVDFGLSAVFENQKKMKERLGTAYYI 205
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 170 LISQTTIIFHIAATVRFDEHIRTA---YNINVKGTQTILALAKRMKGLKSFVHVSTAYCN 226
L+ + + H+AA D I + + NV GT T+L +R FVHVST
Sbjct: 72 LVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVY 131
Query: 227 CD 228
D
Sbjct: 132 GD 133
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 126 YNYFND----AVFDRMRLECPNYADKVDI--VCGQLEADTFGLSARDE--ELLISQTTII 177
YNYFND AV D R E K DI + G + A + L A E + ++ + +
Sbjct: 94 YNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVY 153
Query: 178 FHIAATVRFDEH 189
+ A T+R ++H
Sbjct: 154 YPFARTIRLNDH 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,217,779
Number of Sequences: 62578
Number of extensions: 401404
Number of successful extensions: 1184
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 44
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)