RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17528
(366 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 173 bits (441), Expect = 3e-50
Identities = 68/326 (20%), Positives = 108/326 (33%), Gaps = 67/326 (20%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRM 106
+ +T+ +TGATGFLG LV +LLR ++I L+R +R+ F+ + +
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELL 131
Query: 107 RLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARD 166
R AD++++ V G GL
Sbjct: 132 RHFKELAADRLEV-------------------------------VAGDKSEPDLGLDQPM 160
Query: 167 EELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCN 226
L +I AA V + + NV GT ++ +A K LK F +VSTA
Sbjct: 161 WRRLAETVDLIVDSAAMVNAFPY-HELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVG 218
Query: 227 CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286
P E+ +D + + GG Y +K E L+R+
Sbjct: 219 AA--------IEPSAFTED--------ADIRVISPTRTVDGGWAGGYGTSKWAGEVLLRE 262
Query: 287 VGHE--LPICVLRPS-IVFPT-------LQEPMPLWIKGFNGVMALALGA---GTGLIRV 333
LP+ V R I+ T + + + + +A G
Sbjct: 263 ANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLS-----LMATGIAPRSFYEPDS 317
Query: 334 VQTDPNISMDVVPGDRVINAMAALAW 359
D +P V A+A L
Sbjct: 318 EGNRQRAHFDGLPVTFVAEAIAVLGA 343
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 68.1 bits (167), Expect = 5e-13
Identities = 21/168 (12%), Positives = 42/168 (25%), Gaps = 36/168 (21%)
Query: 175 TIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIA 233
+ A + + T A + + ++V +A
Sbjct: 79 DGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQA-RVPRILYVGSA---------- 127
Query: 234 EKFYPPVFTAEELSALVAHASDEEIALLNE----HIIGGKPNSYTLTKATAEDLVRQVGH 289
A + +E + +SY L K ++ R+
Sbjct: 128 ----------------YAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR 171
Query: 290 E-LPICVLRPSIVF-PTLQEPMP--LWIKGFNGVMALALGAGTGLIRV 333
LP+ + P +V P + NG M + +I
Sbjct: 172 NGLPVVIGIPGMVLGELDIGPTTGRVITAIGNGEMTHYVAGQRNVIDA 219
Score = 40.4 bits (95), Expect = 5e-04
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 38 TLSPIQEFYKDQTIFITGATGFLGSLLVEKLLR 70
P+ + GATG LG +
Sbjct: 3 DEQPLSRPGAHVKYAVLGATGLLGHHAARAIRA 35
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 54.5 bits (132), Expect = 1e-08
Identities = 41/257 (15%), Positives = 68/257 (26%), Gaps = 102/257 (39%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
I +TG TGFLG +VE + + R
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPI-------------------------ILTRS---- 35
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
I ++ N + V D + N + VD V
Sbjct: 36 ----------IGNKAINDYEYRVSDYTLEDLINQLNDVDAV------------------- 66
Query: 171 ISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTA--YCNCD 228
H+AAT I ++ N TQ + + + V+ ST Y +
Sbjct: 67 -------VHLAATRGSQGKISE-FHDNEILTQNLYDACYE-NNISNIVYASTISAYSDET 117
Query: 229 RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQV 287
P +E+ P+ Y ++K E +
Sbjct: 118 --------SLPW--------------NEKELP--------LPDLMYGVSKLACEHIGNIY 147
Query: 288 GHE--LPICVLRPSIVF 302
+ L I LR + ++
Sbjct: 148 SRKKGLCIKNLRFAHLY 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 6e-08
Identities = 55/369 (14%), Positives = 117/369 (31%), Gaps = 96/369 (26%)
Query: 14 HHPDLMDWNLLDKEDEGKELLSDETLSPIQEFYKDQTIFITGATGFLGSLL----VEKLL 69
HH MD+ + + + K++LS F + S+L ++ ++
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVF----EDAFVDN--FDCKDVQDMPKSILSKEEIDHII 55
Query: 70 RCCP---QIRKIILLIRTRGSTSITQRV-----YNYFNDAVFDRMRLEC--P-----NYA 114
++ + ++ + + V NY + ++ E P Y
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYI 113
Query: 115 DKVDIGITHRVYNYFNDAVFDRM---RLEC------------PNYADKVDIVCGQ----- 154
++ D R+YN ++ VF + RL+ P V ++ G
Sbjct: 114 EQRD-----RLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPA--KNV-LIDGVLGSGK 163
Query: 155 --LEADTFGLSARDEELLISQTTIIF--HIAATVRFDEHIRTAYNINVKGTQTILALAKR 210
+ D ++ IF ++ + + + + + +
Sbjct: 164 TWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 211 MKGLKSFVHVSTAYCNCDRKFIAEKFYPP-------VFTAEELSA-------LV----AH 252
+K +H A R+ + K Y V A+ +A L+
Sbjct: 220 SSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 253 ASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV----GHELP--ICVLRP---SIVFP 303
+D A HI +S TLT + L+ + +LP + P SI+
Sbjct: 277 VTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 304 TLQEPMPLW 312
++++ + W
Sbjct: 336 SIRDGLATW 344
Score = 30.6 bits (68), Expect = 1.1
Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 45/191 (23%)
Query: 21 WNLLDKEDEGKELLSDETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRC--CPQIRKI 78
W + K D + S +++ K+ TI I + +E ++ + +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-------IYLELKVKLENEYALHRS 448
Query: 79 IL----LIRTRGSTSIT-QRVYNYF------------NDAVFDRMRLECPNY-------- 113
I+ + +T S + + YF + R+ ++
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 114 ADKVDIGITHRVYNYFNDAVF--DRMRLECPNYADKV-DIVCGQLEADTFGLSARDEELL 170
D + + N F + P Y V I+ F L +E L+
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-------DF-LPKIEENLI 560
Query: 171 ISQTTIIFHIA 181
S+ T + IA
Sbjct: 561 CSKYTDLLRIA 571
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 51.9 bits (125), Expect = 1e-07
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 28/133 (21%)
Query: 176 IIFHIAA---TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFI 232
+FH+A + N T + K K LK V+ + I
Sbjct: 102 YVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCS------I 155
Query: 233 AEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVR--QVGH 289
AEK + EE + + +S Y+++K E H
Sbjct: 156 AEKTFDDAKATEET----------------DIVSLHNNDSPYSMSKIFGEFYSVYYHKQH 199
Query: 290 ELPICVLRPSIVF 302
+LP R V+
Sbjct: 200 QLPTVRARFQNVY 212
Score = 33.5 bits (77), Expect = 0.10
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 46 YKDQTIFITGATGFLGSLLVEKLLR 70
+ + + G GF+GS LV++LL
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLE 54
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 50.4 bits (121), Expect = 2e-07
Identities = 25/192 (13%), Positives = 49/192 (25%), Gaps = 46/192 (23%)
Query: 165 RDEEL---LISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
D +++ I H+ + ++ N+ G + A+ G V S
Sbjct: 53 ADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIGLYNLYEAARAH-GQPRIVFAS 110
Query: 222 T--AYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKA 278
+ + + ++ +P+ Y ++K
Sbjct: 111 SNHTIGYYPQ-------TERL--------------GPDVPA--------RPDGLYGVSKC 141
Query: 279 TAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336
E+L R ++R P L + LI V
Sbjct: 142 FGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLS-------TWFSHDDFVSLIEAVFR 194
Query: 337 DPNISMDVVPGD 348
P + VV G
Sbjct: 195 APVLGCPVVWGA 206
Score = 39.3 bits (92), Expect = 0.001
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIR 76
+ + +TGA G LG ++ E+L +R
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILR 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 3e-07
Identities = 53/296 (17%), Positives = 81/296 (27%), Gaps = 111/296 (37%)
Query: 155 LEADTFGLSARDE-----ELLISQTTIIF--HIAATVRFDEHIRTAYNINVKGTQTILAL 207
L T G +A DE EL+ F ++++ V + V +L L
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGK-----FLGYVSSLVEPSK---------VGQFDQVLNL 86
Query: 208 AKRMKGLKSF---------VHVSTAYCNCD-------RKFIAEKFY------PPVFTAEE 245
L F +H A + K + + + F +
Sbjct: 87 C-----LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 246 LSALVAHASDEEIALLNEHIIGGKPNS----------YTLTKATAEDLVRQVG---HELP 292
SAL + L+ I GG+ N+ Y DL++ EL
Sbjct: 142 NSALFRAVGEGNAQLVA--IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 293 ICVLRPSIVFPT-------LQEP---------------MPLWIKGFNGVMALA------- 323
L VF L+ P PL GV+ LA
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-----IGVIQLAHYVVTAK 254
Query: 324 -LGAGTGLIR-VVQTDPNISMDVVPGDRVI-----------NAMAALAWYFLFSCR 366
LG G +R ++ S +V I + A+ F R
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTA-VAIAETDSWESFFVSVRKAITVLFFIGVR 309
Score = 45.8 bits (108), Expect = 2e-05
Identities = 53/317 (16%), Positives = 95/317 (29%), Gaps = 119/317 (37%)
Query: 86 GSTSITQRV------YNYFNDA--VFDRMRLECPNYADKVDIGITHRVYN-------YFN 130
GS Q Y A V++R ++ D I V N +F
Sbjct: 1625 GS----QEQGMGMDLYKTSKAAQDVWNRA---DNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSAR-DEELLISQTTIIFHIAATVRFDEH 189
R+R NY+ + + D + + +E+ T+ F R ++
Sbjct: 1678 GEKGKRIR---ENYSA----MIFETIVDGKLKTEKIFKEINEHSTSYTF------RSEKG 1724
Query: 190 I--RTAYNINVKGTQ----TI-LALAKRMK--GLKSFVHVSTAYCNCDRKFIA-----EK 235
+ T + TQ + A + +K GL A E
Sbjct: 1725 LLSATQF------TQPALTLMEKAAFEDLKSKGLIP-----------ADATFAGHSLGE- 1766
Query: 236 FYPPVFTAEELSALVAHAS----DEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHEL 291
Y +AL + A + + ++ G T+ A D ++G
Sbjct: 1767 -Y---------AALASLADVMSIESLVEVVFYR---GM----TMQVAVPRD---ELGRSN 1806
Query: 292 P-ICVLRPSIVFPTL-QEPMPLWIKGFNGVMALALGAGTG-LIRVV-------QTDPNIS 341
+ + P V + QE + ++ +G TG L+ +V Q
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVE--------RVGKRTGWLVEIVNYNVENQQY----- 1853
Query: 342 MDVVPGDRVINAMAALA 358
V GD + A+ +
Sbjct: 1854 --VAAGD--LRALDTVT 1866
Score = 35.4 bits (81), Expect = 0.034
Identities = 57/334 (17%), Positives = 106/334 (31%), Gaps = 108/334 (32%)
Query: 25 DKEDEGKELLSDETLSP-IQEFYKDQTIFITG------ATGFLGS-----LLVEKLLRCC 72
+ K D+ L+ + EF + ++ G A L + ++L++
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEF---ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 73 PQIRKIILLIRTRGSTSI--------TQRVYNYF-----NDAVFDRMRLECPNYADKVDI 119
R + + S S ++ F D F+ +R D+
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR----------DL 176
Query: 120 GITHRVYNYFNDAVFDRMR------LECPNYADKV-----DIVCGQLEADTFGLSARDEE 168
++ Y+ + + A+KV +I+ LE + + D++
Sbjct: 177 ---YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-EWLENPS---NTPDKD 229
Query: 169 LLISQTT---IIF-----HIAATVR--------FDEHIRTAYNINVKGTQTILALAKRMK 212
L+S +I H T + +++ A + +G T +A+A+
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAE-TD 287
Query: 213 GLKSFVHVSTAYCNCDRKFIAEKF---------YPPVFTAEELSALVAHASDEEIALLNE 263
+SF + + RK I F YP L + S E NE
Sbjct: 288 SWESF------FVSV-RKAITVLFFIGVRCYEAYPNT----SLPPSILEDSLEN----NE 332
Query: 264 HIIGGKPNSYTL-----TKATAEDLVRQVGHELP 292
G P S L T+ +D V + LP
Sbjct: 333 ----GVP-SPMLSISNLTQEQVQDYVNKTNSHLP 361
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 50.9 bits (122), Expect = 3e-07
Identities = 38/299 (12%), Positives = 67/299 (22%), Gaps = 71/299 (23%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
+ + G G+ G L + V D + R+
Sbjct: 13 RVMVIGGDGYCGWATALHLSKK-------------------NYEVCIV--DNLVRRLFDH 51
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
I H + + + L DI D E
Sbjct: 52 QLGLESLTPIASIHDRISRWKALTGKSIELY------VGDI--------------CDFEF 91
Query: 170 L---ISQTTI--IFHIAA------TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFV 218
L + H ++ + NV GT +L K V
Sbjct: 92 LAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLV 151
Query: 219 HVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTK 277
+ T E P + E + + + +S Y L+K
Sbjct: 152 KLGTM---------GEYGTPNIDIEEGYITI------THNGRTDTLPYPKQASSFYHLSK 196
Query: 278 ATAEDLVRQVGHE--LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVV 334
+ + L +V+ + + + N + GT L R
Sbjct: 197 VHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNR-LDYDAVFGTALNRFC 254
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 46.6 bits (111), Expect = 5e-06
Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 43/173 (24%)
Query: 149 DIVCGQLEADTF-GLSARDEELLIS-----QTTIIFHIAA--TVRFDEHIRTAYNINVKG 200
DIV F L + + + IFH+A + + ++ AY +N+ G
Sbjct: 32 DIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNG 91
Query: 201 TQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYP--PVFTAEELSALVAHASDEEI 258
T IL AK+ ++ V ST F P P ++
Sbjct: 92 TYNILEAAKQ-HRVEKVVIPST----------IGVFGPETPKNKVPSITIT--------- 131
Query: 259 ALLNEHIIGGKPNS-YTLTKATAEDLVRQVGHE--LPICVLRPSIVFPTLQEP 308
+P + + +TK AE L + + L + LR + EP
Sbjct: 132 ----------RPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEP 174
Score = 37.3 bits (87), Expect = 0.006
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT 91
I +TG++G +G+ LV L + I I R + I
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIK 42
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 45.0 bits (107), Expect = 2e-05
Identities = 39/262 (14%), Positives = 68/262 (25%), Gaps = 86/262 (32%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
I + ++QTI ITG GF+GS L +V
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQE--------------NH---PKAKVV------ 40
Query: 102 VFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG 161
V D+ R + ++ N F K +++ +
Sbjct: 41 VLDKFRS-----NTLFSNNRPSSLGHFKNLIGF------------KGEVIAADINNP--- 80
Query: 162 LSARDEELLISQTTIIFHIAA---TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFV 218
L +FH AA T ++ N + +L +A+ K +
Sbjct: 81 --LDLRRLEKLHFDYLFHQAAVSDTTMLNQ--ELVMKTNYQAFLNLLEIARSKK--AKVI 134
Query: 219 HVSTA--YCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTL 275
+ S+A Y N P + Y
Sbjct: 135 YASSAGVYGN-----------TKAPNVVG--------------------KNESPENVYGF 163
Query: 276 TKATAEDLVRQVGHELPICVLR 297
+K ++ V ++ LR
Sbjct: 164 SKLCMDEFVLSHSNDNVQVGLR 185
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 43.8 bits (104), Expect = 3e-05
Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 43/177 (24%)
Query: 177 IFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVST--AYCNCDRKFIAE 234
I H+ V + N+ G + A R G V S+ R
Sbjct: 67 IIHLGG-VSVERPWNDILQANIIGAYNLYEAA-RNLGKPRIVFASSNHTIGYYPR----- 119
Query: 235 KFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQVGHE--L 291
+ D E+ +P+S Y L+K EDL H+ +
Sbjct: 120 --TTRI--------------DTEVPR--------RPDSLYGLSKCFGEDLASLYYHKFDI 155
Query: 292 PICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGD 348
+R FP ++ + L++ L++ P + VV G
Sbjct: 156 ETLNIRIGSCFPKPKDARMMA-------TWLSVDDFMRLMKRAFVAPKLGCTVVYGA 205
Score = 37.7 bits (88), Expect = 0.003
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIR 76
+ +TGA G +GS + L ++R
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVR 30
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 44.1 bits (105), Expect = 4e-05
Identities = 39/265 (14%), Positives = 65/265 (24%), Gaps = 110/265 (41%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
I ITG GF+G L L+ G + V V D +
Sbjct: 9 RILITGGAGFIGGHLARALVA--------------SG-----EEV------TVLDDL--- 40
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
+ + V + + + V +V
Sbjct: 41 --RVPPMIPP---EGTGKFLEKPVLELEERDLSD----VRLV------------------ 73
Query: 170 LISQTTIIFHIAATVRFDEHIR------TAYNINVKGTQTILALAKRMKGLKSFVHVSTA 223
+H+A+ + Y NV + +LAL G+ V ST
Sbjct: 74 --------YHLASHK----SVPRSFKQPLDYLDNVDSGRHLLALCTS-VGVPKVVVGSTC 120
Query: 224 --YCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATA 280
Y + E + + P S Y +K
Sbjct: 121 EVYGQ-----------ADT-----------LPTPE------DSPLS--PRSPYAASKVGL 150
Query: 281 EDLVR--QVGHELP-ICVLRPSIVF 302
E + Q P + ++R V+
Sbjct: 151 EMVAGAHQRASVAPEVGIVRFFNVY 175
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 43.8 bits (104), Expect = 4e-05
Identities = 49/307 (15%), Positives = 88/307 (28%), Gaps = 112/307 (36%)
Query: 4 ELMKEISGKSHHPDLMDWNLLDKEDEGKELLSDETLSPIQEFYKDQTIFITGATGFLGSL 63
MKE + MD L G + + + I +TG GF+GS
Sbjct: 16 SGMKETAAAKFERQHMDSPDLG-TGGGSGI-------------EGRMIIVTGGAGFIGSN 61
Query: 64 LVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123
+V+ L +G T I V D ++ K +
Sbjct: 62 IVKALND--------------KGITDIL----------VVDNLKD-----GTKFVNLVDL 92
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAA- 182
+ +Y + F +++ V+ + FH A
Sbjct: 93 NIADYMDKEDF-LIQIMAGEEFGDVEAI--------------------------FHEGAC 125
Query: 183 --TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTA--YCNCDRKFIAEKFYP 238
T +D + + N + ++ +L + F++ S+A Y FI + Y
Sbjct: 126 SSTTEWDG--KYMMDNNYQYSKELLHYCLERE--IPFLYASSAATYGGRTSDFIESREYE 181
Query: 239 PVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQVGHE--LPICV 295
KP + + +K ++ VRQ+ E I
Sbjct: 182 ------------------------------KPLNVFGYSKFLFDEYVRQILPEANSQIVG 211
Query: 296 LRPSIVF 302
R V+
Sbjct: 212 FRYFNVY 218
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 43.0 bits (101), Expect = 1e-04
Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 53/193 (27%)
Query: 168 ELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNC 227
E + + I H+A R EH + NV +L + R K + +S++
Sbjct: 41 ESALLKADFIVHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTR-NTKKPAILLSSS---- 94
Query: 228 DRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287
I + N Y +K E L+R+
Sbjct: 95 -------------------------------------IQATQDNPYGESKLQGEQLLREY 117
Query: 288 GHE--LPICVLRPSIVFPTLQEP-MPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344
E + + R +F +P I F +A + D N+ + +
Sbjct: 118 AEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIA----RNEEIQV---NDRNVELTL 170
Query: 345 VPGDRVINAMAAL 357
D ++ +
Sbjct: 171 NYVDDIVAEIKRA 183
Score = 32.2 bits (73), Expect = 0.28
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 51 IFITGATGFLGSLLVEKLL 69
I ITGA GF+G L L
Sbjct: 3 IVITGAKGFVGKNLKADLT 21
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 42.7 bits (101), Expect = 1e-04
Identities = 30/182 (16%), Positives = 48/182 (26%), Gaps = 68/182 (37%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRM 106
++ I ITGA GF+ S + +L G I
Sbjct: 28 ENLKISITGAGGFIASHIARRLKH--------------EGHYVIA--------------- 58
Query: 107 RLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARD 166
D + F + L KV D
Sbjct: 59 ----------SDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVT-----EGVD-------- 95
Query: 167 EELLISQTTIIFHIAATV-----RFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
+F++AA + H YN N + ++ A+ G+K F + S
Sbjct: 96 ---------HVFNLAADMGGMGFIQSNHSVIMYN-NTMISFNMIEAARI-NGIKRFFYAS 144
Query: 222 TA 223
+A
Sbjct: 145 SA 146
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 41.8 bits (98), Expect = 2e-04
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85
T+ +TGA+G G ++ +KL + L+R+
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRSA 40
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A
{Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB:
1wvg_A*
Length = 357
Score = 42.1 bits (99), Expect = 2e-04
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 43 QEFYKDQTIFITGATGFLGSLLVEKLLR 70
F++ + +F+TG TGF G L L
Sbjct: 4 NSFWQGKRVFVTGHTGFKGGWLSLWLQT 31
Score = 30.2 bits (68), Expect = 0.99
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 176 IIFHIAA--TVR--FDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVST--AYCNCDR 229
I+FH+AA VR + E + T Y+ NV GT +L + + G+K+ V++++ Y N +
Sbjct: 83 IVFHMAAQPLVRLSYSEPVET-YSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW 141
Query: 230 KFIAEKFYP 238
+ +
Sbjct: 142 IWGYRENEA 150
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK
triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1
MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A*
2gn9_A* 2gna_A*
Length = 344
Score = 40.3 bits (95), Expect = 6e-04
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 35 SDETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83
++ Q +QTI ITG TG G V K+L +KII+ R
Sbjct: 8 GSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLD-TTNAKKIIVYSR 55
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 39.8 bits (93), Expect = 7e-04
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83
+++++FI GA+G G +L++++L K+ L+ R
Sbjct: 17 QNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGR 52
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 40.1 bits (94), Expect = 8e-04
Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 61/181 (33%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
I I GA G +G L ++L++
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVK--------------------------------------- 36
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECP-NYADKVDIVCGQLEADTFGLSARDEE 168
+ + + D + E P ++ VD L + E+
Sbjct: 37 ----DGSLGGKPVEKF------TLIDVFQPEAPAGFSGAVDARAADL-SA----PGEAEK 81
Query: 169 LLISQTTIIFHIAA--TVRFDEHIRTAYNINVKGTQTILALAK----RMKGLKSFVHVST 222
L+ ++ +IFH+AA + + Y IN+ GT+ + + + V S+
Sbjct: 82 LVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSS 141
Query: 223 A 223
Sbjct: 142 I 142
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 38.9 bits (91), Expect = 0.001
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRL 108
+ + + GATG G L++++L P + K+I R + + R+ N +
Sbjct: 6 KRVLLAGATGLTGEHLLDRILS-EPTLAKVI--APARKALAEHPRLDNPVGP--LAELLP 60
Query: 109 ECPNYADKV--DIGITHR 124
+ D +G T +
Sbjct: 61 QLDGSIDTAFCCLGTTIK 78
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 39.1 bits (92), Expect = 0.001
Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 62/199 (31%)
Query: 142 PNYA-DKVDIVCGQLEADTFGLSARDEELLIS-----QTTIIFHIAATVRFDEHI---RT 192
N+ DI R++ + FH+A V I
Sbjct: 50 GNFEFVHGDI--------------RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCM 95
Query: 193 AYNINVKGTQTILALAKRMKGLKSFVHVST---------AYCNCDRKFIAEKFYPPVFTA 243
+ INV GT +L ++ + ++ ST N P +
Sbjct: 96 DFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYD- 154
Query: 244 EELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQVGH--ELPICVLRPSI 300
E L +S Y +K A+ + L V R S
Sbjct: 155 ------------ESTQL--------DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSS 194
Query: 301 V-----FPTLQEP-MPLWI 313
+ F T + + +
Sbjct: 195 MYGGRQFATYDQGWVGWFC 213
Score = 28.7 bits (65), Expect = 3.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQI 75
+ ITG GFLGS L L +
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDL 28
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 38.1 bits (89), Expect = 0.002
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLR 70
K + I + GA+GF+GS L+ + L
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALN 26
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 38.1 bits (88), Expect = 0.002
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
I + GATG GS +V + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 38.0 bits (88), Expect = 0.002
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
I I GATG GS ++E+
Sbjct: 3 IGIIGATGRAGSRILEEAKN 22
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 38.0 bits (89), Expect = 0.003
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84
+I +TGATG LG L+++ LL+ P + II ++R
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQ-IIAIVRN 35
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 38.2 bits (88), Expect = 0.003
Identities = 38/267 (14%), Positives = 65/267 (24%), Gaps = 82/267 (30%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
I G TG +G+ L E L + +VY
Sbjct: 3 VALIVGVTGIIGNSLAEILPL--------------ADTPGGPWKVY-------------- 34
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
G+ R + + ++ V + D +
Sbjct: 35 ----------GVARR-------------TRPAWHEDNPINYVQCDI------SDPDDSQA 65
Query: 170 LISQTTIIFHIAATV---RFDEHIRTAYNINVKGTQTIL-ALAKRMKGLKSFVHVSTAYC 225
+S T + H+ R E + N K + +L A+ LK +
Sbjct: 66 KLSPLTDVTHVFYVTWANRSTE--QENCEANSKMFRNVLDAVIPNCPNLKHISLQTGR-- 121
Query: 226 NCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285
K Y F + + + N Y + + V
Sbjct: 122 ---------KHYMGPFES------YGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVE 166
Query: 286 QVGHELPICVLRPSIVF-PTLQEPMPL 311
+ L V RP +F + M L
Sbjct: 167 K-KEGLTWSVHRPGNIFGFSPYSMMNL 192
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 38.0 bits (89), Expect = 0.003
Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 98/260 (37%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
I +TG GF+GS +V+ L +G T I V D ++
Sbjct: 2 IIVTGGAGFIGSNIVKALND--------------KGITDIL----------VVDNLKD-- 35
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
K + + +Y + F +++ V+ +
Sbjct: 36 ---GTKFVNLVDLNIADYMDKEDF-LIQIMAGEEFGDVEAI------------------- 72
Query: 171 ISQTTIIFHIAA---TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTA--YC 225
FH A T +D + + N + ++ +L + + F++ S+A Y
Sbjct: 73 -------FHEGACSSTTEWDG--KYMMDNNYQYSKELLHYCLE-REIP-FLYASSAATYG 121
Query: 226 NCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLV 284
FI + Y KP + Y +K ++ V
Sbjct: 122 GRTSDFIESREYE------------------------------KPLNVYGYSKFLFDEYV 151
Query: 285 RQVGHE--LPICVLRPSIVF 302
RQ+ E I R V+
Sbjct: 152 RQILPEANSQIVGFRYFNVY 171
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 38.1 bits (89), Expect = 0.003
Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 56/187 (29%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL-IRTRGSTSITQRVYNYFND 100
+Q + G G +G + +++ + P +K+ ++ I + + + + F
Sbjct: 29 LQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHVVDISENNMVELVRDIRSSFGY 86
Query: 101 AVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTF 160
+ + +A +DIG D + D V
Sbjct: 87 -----INGDFQTFA--LDIGSIEYDAFIKAD--------------GQYDYV--------- 116
Query: 161 GLSARDEELLISQTTIIFHIAAT--VRFDEHIRT---AYNINVKGTQTILALAKRMKGLK 215
+++A VR ++ T ++NV T + + G K
Sbjct: 117 -----------------LNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDA-GAK 158
Query: 216 SFVHVST 222
+ VST
Sbjct: 159 KYFCVST 165
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 37.7 bits (88), Expect = 0.005
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 47 KDQTIFITGATGFLGSLLVEKLL 69
+ + +TGA GF+ S +VE+LL
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLL 32
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 37.2 bits (87), Expect = 0.006
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 37/158 (23%)
Query: 165 RDEELLIS-----QTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVH 219
D L+ Q + H AA+ + + N G ++ AK+ + FV+
Sbjct: 76 ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKK-NNVGRFVY 134
Query: 220 VSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKA 278
TA C + + PV NS Y ++K+
Sbjct: 135 FQTALC-----YGVKPIQQPV---------------------RLDHPRNPANSSYAISKS 168
Query: 279 TAEDLVRQVGHELPICVLRPSIVFPTLQEP--MPLWIK 314
ED + G L R + V +P++ +
Sbjct: 169 ANEDYLEYSG--LDFVTFRLANVVGPRNVSGPLPIFFQ 204
Score = 32.6 bits (75), Expect = 0.16
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 50 TIFITGATGFLGSLLVEKLLR 70
+FITG G +GS + E LL
Sbjct: 23 KVFITGICGQIGSHIAELLLE 43
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 36.9 bits (86), Expect = 0.006
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
IFI G+TG +G L++ L
Sbjct: 3 IFIVGSTGRVGKSLLKSLST 22
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 37.1 bits (87), Expect = 0.007
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 39/97 (40%)
Query: 142 PNYA-DKVDIVCGQLEADTFGLSARDEEL---LISQTTIIFHIAATVRFDE-H------- 189
P Y K D+ D EL L+ + + H+AA E H
Sbjct: 54 PRYTFVKGDV--------------ADYELVKELVRKVDGVVHLAA-----ESHVDRSISS 94
Query: 190 ----IRTAYNINVKGTQTILALAKRMKGLKSFVHVST 222
+ + NV GT T+L +R FVHVST
Sbjct: 95 PEIFLHS----NVIGTYTLLESIRRENPEVRFVHVST 127
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 37.1 bits (87), Expect = 0.007
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 165 RDEELL--ISQTTIIFHIAA--TVRFD-EHIRTAYNINVKGTQTILALAKRMKGLKSFVH 219
+++ + ++HIAA VR E+ Y NV T +L ++ G+ V
Sbjct: 53 AADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRK-AGVSRIVF 111
Query: 220 VSTA 223
ST+
Sbjct: 112 TSTS 115
Score = 29.0 bits (66), Expect = 2.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 50 TIFITGATGFLGSLLVEKLLR 70
I +TG GF+GS +V+KL
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSE 23
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 36.5 bits (85), Expect = 0.007
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 50 TIFITGATGFLGSLLVEKLLR 70
I I GATG G + + ++
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQ 25
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 36.9 bits (86), Expect = 0.008
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 50 TIFITGATGFLGSLLVEKLLR 70
I +TGATG LG+ + + +
Sbjct: 2 NIMLTGATGHLGTHITNQAIA 22
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 36.3 bits (84), Expect = 0.009
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 49 QTIFITGATGFLGSLLVEKLL 69
+ + I GA G + ++ +L
Sbjct: 24 KNVLILGAGGQIARHVINQLA 44
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 36.5 bits (85), Expect = 0.010
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 49 QTIFITGATGFLGSLLVEKLL 69
+T + G TGF+ SLLV+ LL
Sbjct: 10 KTACVVGGTGFVASLLVKLLL 30
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 36.7 bits (85), Expect = 0.010
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLR 70
K + + I G GF+G L +++L
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILE 46
Score = 29.0 bits (65), Expect = 2.8
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 168 ELLISQTTIIFHIA--ATVRF--DEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVST 222
E + + +I + AT + +R ++ + I+ A + K V ST
Sbjct: 86 EYHVKKCDVILPLVAIATPATYVKQPLRVFE-LDFEANLPIVRSAVKYG--KHLVFPST 141
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 36.5 bits (85), Expect = 0.010
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 47 KDQTIFITGATGFLGSLLVEKLL 69
+ +T+ +TGA+GF+GS LV +LL
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLL 26
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 36.2 bits (84), Expect = 0.010
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
+ + GA G + L+ +L
Sbjct: 24 VLVVGANGKVARYLLSELKN 43
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 35.8 bits (82), Expect = 0.013
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 50 TIFITGATGFLGSLLVEKLLR 70
I I GA G + L LL
Sbjct: 7 YITILGAAGQIAQXLTATLLT 27
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 36.2 bits (84), Expect = 0.014
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 50 TIFITGATGFLGSLLVEKLLR 70
T+ ITG+ G +G L +L
Sbjct: 149 TVAITGSRGLVGRALTAQLQT 169
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 35.7 bits (83), Expect = 0.017
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84
I ITGATG LG ++E L++ P + I+ ++R
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQ-IVAIVRN 34
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 35.7 bits (83), Expect = 0.017
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLR 70
+T ITG GF+GS L+EKLL+
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLK 47
Score = 30.3 bits (69), Expect = 1.1
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 165 RDEEL---LISQTTIIFHIAA--TVRFD-EHIRTAYNINVKGTQTILALAKRMKGLKSFV 218
RD ++ + H AA +V T N+ G IL AK ++SF
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKN-AQVQSFT 147
Query: 219 HVSTA 223
+ +++
Sbjct: 148 YAASS 152
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 35.3 bits (82), Expect = 0.020
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 173 QTTIIFHIAA--TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTA 223
+ T I+ +AA + +++ A+++N+ +L LA + K +K S+
Sbjct: 68 KITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLA-KAKKIKKIFWPSSI 119
Score = 35.3 bits (82), Expect = 0.021
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
I I GA G +G+ L +KL +
Sbjct: 5 ILIIGACGQIGTELTQKLRK 24
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 35.7 bits (83), Expect = 0.021
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLR 70
+ + ITG GF+GS L+E LL+
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLLK 49
Score = 34.9 bits (81), Expect = 0.031
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 165 RDEELL---ISQTTIIFHIAATVRFDEHI---RTAYNINVKGTQTILALAKRMKGLKSFV 218
R+ + + + H AA I T+ N+ G +L A R ++SF
Sbjct: 91 RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAA-RDAKVQSFT 149
Query: 219 HVSTA 223
+ +++
Sbjct: 150 YAASS 154
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 35.2 bits (82), Expect = 0.023
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 165 RDEELL---ISQTTI--IFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVH 219
D LL + H AA + + NV+G+ + A + G+K ++
Sbjct: 75 TDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKA-GVKRLLN 133
Query: 220 VSTA 223
TA
Sbjct: 134 FQTA 137
Score = 27.1 bits (61), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 50 TIFITGATGFLGSLLVEKLLR 70
I ITG G LGS L+E L
Sbjct: 22 RILITGGAGCLGSNLIEHWLP 42
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 35.5 bits (82), Expect = 0.024
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
+ I G GF+G+ L E+LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 35.2 bits (82), Expect = 0.025
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 165 RDEELLIS-QTTIIFHIAA--TVRFD-EHIRTAYNINVKGTQTILALAKRMKGLKSFVHV 220
+D + ++FH AA VR +N NV T +L A++ G+++ V
Sbjct: 53 KDYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQ-TGVRTVVFA 111
Query: 221 STA 223
S++
Sbjct: 112 SSS 114
Score = 29.4 bits (67), Expect = 2.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
I +TG GF+GS LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVE 22
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 34.9 bits (81), Expect = 0.030
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 50 TIFITGATGFLGSLLVEKLL 69
+ +TG TGFLGS +++ LL
Sbjct: 3 RVCVTGGTGFLGSWIIKSLL 22
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 34.8 bits (81), Expect = 0.040
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 40/115 (34%)
Query: 190 IRTAYNINVKGTQTILALAKRMKGLKSFVHVST--AYCNCDRKFIAEKFYPPVFTAEELS 247
T NV+GTQT+L A G+ VHVST Y + D +T
Sbjct: 100 TET----NVQGTQTLLQCAVD-AGVGRVVHVSTNQVYGSID---------SGSWT----- 140
Query: 248 ALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVR--QVGHELPICVLRPS 299
E L +PNS Y +KA ++ + R + L + + R
Sbjct: 141 --------ESSPL--------EPNSPYAASKAGSDLVARAYHRTYGLDVRITRCC 179
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 34.1 bits (79), Expect = 0.052
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 176 IIFHIAATVRFD---EHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAY 224
+I H AA R D A +NV + + A + +++S+ Y
Sbjct: 63 VIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAF--LIYISSDY 112
Score = 27.2 bits (61), Expect = 8.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 50 TIFITGATGFLGSLLVEKL 68
+ +TGATG LG + ++
Sbjct: 4 RVLVTGATGLLGRAVHKEF 22
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 33.9 bits (77), Expect = 0.072
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
+ I GATGF+G + L +L R + +++ D
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRPTY---ILARPGPRSPSKAKIFKALEDK 60
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 33.7 bits (77), Expect = 0.080
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQR 93
I + GATG++G + + L +L+ + S++ +
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPTF--LLVRESTASSNSEKA 47
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 33.3 bits (77), Expect = 0.13
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 190 IRTAYNINVKGTQTILALAKRMKGLKSFVHVST 222
T NV GT T+L L K+ +K V VST
Sbjct: 122 YDT----NVIGTVTLLELVKKYPHIK-LVQVST 149
Score = 27.5 bits (62), Expect = 7.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIIL 80
I +TG GF+GS V +L+ + I
Sbjct: 26 NILVTGGAGFIGSNFVHYMLQSYETYKIINF 56
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 32.2 bits (74), Expect = 0.23
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 176 IIFHIAATVRFD---EHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAY 224
+I + AA D AY IN + + I+ K + VH+ST Y
Sbjct: 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSY--IVHISTDY 109
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 32.1 bits (73), Expect = 0.27
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 48 DQTIFITGATGFLGSLLVEKLLR 70
+TI + GATG G+ L+
Sbjct: 5 KKTIAVVGATGRQGASLIRVAAA 27
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 31.6 bits (72), Expect = 0.33
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 50 TIFITGATGFLGSLLVEKLLR 70
+ + G TG G + LL
Sbjct: 7 LVVVFGGTGAQGGSVARTLLE 27
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 31.8 bits (72), Expect = 0.34
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS 89
I I G TG +G +V ++ L+R + +
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAA 40
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 31.6 bits (72), Expect = 0.41
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 49 QTIFITGATGFLGSLLVEKLLR 70
+ I ITG GF+GS L +KL+
Sbjct: 28 KRILITGGAGFVGSHLTDKLMM 49
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 31.3 bits (72), Expect = 0.42
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 175 TIIFHIAATVRFD---EHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAY 224
++ + AA D E AY IN G + LA A G + V +ST Y
Sbjct: 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPK-NLAAAAYSVGAE-IVQISTDY 115
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 31.4 bits (72), Expect = 0.42
Identities = 35/169 (20%), Positives = 49/169 (28%), Gaps = 68/169 (40%)
Query: 139 LECPNYA-DKVDIVCGQLEADTFGLSARDEEL---LISQTTIIFHIAATVRFDE-H---- 189
+ DI D EL L ++ I H AA E H
Sbjct: 51 ILGDRVELVVGDI--------------ADAELVDKLAAKADAIVHYAA-----ESHNDNS 91
Query: 190 -------IRTAYNINVKGTQTILALAKRMKGLKSFVHVST-----AYCNCDRKFIAEKFY 237
I T N GT T+L A++ F HVST + +
Sbjct: 92 LNDPSPFIHT----NFIGTYTLLEAARKYD--IRFHHVSTDEVYGDLPLREDLPGHGEGP 145
Query: 238 PPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVR 285
FT E P+S Y+ TKA ++ +V+
Sbjct: 146 GEKFT-------------AETNY--------NPSSPYSSTKAASDLIVK 173
Score = 27.9 bits (63), Expect = 5.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIIL 80
+ I +TG GF+GS V + P + +L
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 36
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 31.4 bits (71), Expect = 0.44
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI 90
+ I G TG++G +V + +L R ++I
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPTY---VLFRPEVVSNI 43
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 31.0 bits (71), Expect = 0.57
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 165 RDEELLIS-----QTTIIFHIAATVRFDEHIR---TAYNINVKGTQTILALAKRMKGLKS 216
RD+E + + T + H AA + + +N+ G +L ++ G++
Sbjct: 53 RDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQ-YGVEK 111
Query: 217 FVHVSTA 223
V ST
Sbjct: 112 LVFASTG 118
Score = 27.5 bits (62), Expect = 6.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 50 TIFITGATGFLGSLLVEKLLR 70
+ +TG GF+GS +VE LL
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLA 22
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 30.9 bits (71), Expect = 0.58
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 176 IIFHIAATVRFD---EHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAY 224
II H AA + D + AY IN G + +A+A ++ G K V++ST Y
Sbjct: 59 IIIHCAAYTKVDQAEKERDLAYVINAIGAR-NVAVASQLVGAK-LVYISTDY 108
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 30.6 bits (69), Expect = 0.70
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAV 102
I I G TG++G+ +V+ L+ + TR ++S T + + +
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTY--VF---TRPNSSKTTLLDEFQSLGA 60
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 30.8 bits (70), Expect = 0.77
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLR 70
P + + I G GF+G+ L E+LLR
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLR 337
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 30.3 bits (68), Expect = 0.99
Identities = 11/54 (20%), Positives = 19/54 (35%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAV 102
+ I I G TG++G +V L + + S Q + + V
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGV 58
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 30.3 bits (69), Expect = 1.1
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 22/91 (24%)
Query: 244 EELSA--LVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIV 301
+ELS L+A ++D + L G Y TA L GH +P+ LR
Sbjct: 7 DELSWRGLIAQSTDLD--TLAAEAQRGPMTVYAGFDPTAPSL--HAGHLVPLLTLR---- 58
Query: 302 FPTLQEPMPLWIKGFNGVMALAL-GAGTGLI 331
Q G + L G TG+I
Sbjct: 59 --RFQR---------AGHRPIVLAGGATGMI 78
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 30.2 bits (69), Expect = 1.2
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 244 EELSA--LVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIV 301
EL LV +DE+ L + + + Y TA+ L +GH I +R
Sbjct: 5 AELQWRGLVNQTTDED--GLRKLLNEERVTLYCGFDPTADSL--HIGHLATILTMR---- 56
Query: 302 FPTLQEPMPLWIKGFNGVMALAL-GAGTGLI 331
Q+ G +AL G TGLI
Sbjct: 57 --RFQQ---------AGHRPIALVGGATGLI 76
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; HET: AZY; 1.80A {Escherichia
coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 29.9 bits (68), Expect = 1.2
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 28/94 (29%)
Query: 244 EELSA--LVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIV 301
++L LVA +DEE L E + G TA+ L +GH +P+ L+
Sbjct: 8 KQLQERGLVAQVTDEE--ALAERLAQGPIALVCGFDPTADSL--HLGHLVPLLCLK---- 59
Query: 302 FPTLQE----PMPLWIKGFNGVMALALGAGTGLI 331
Q+ P+ L +G TGLI
Sbjct: 60 --RFQQAGHKPVAL------------VGGATGLI 79
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 29.8 bits (68), Expect = 1.3
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 52 FITGATGFLGSLLVEKLL 69
ITG GF+G L L
Sbjct: 16 LITGVAGFVGKYLANHLT 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 29.8 bits (68), Expect = 1.3
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 244 EELSA--LVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIV 301
E+L L+ +DE+ + + + + Y TA+ L +GH LP LR
Sbjct: 7 EDLKWRGLIYQQTDEQ--GIEDLLNKEQVTLYCGADPTADSL--HIGHLLPFLTLR---- 58
Query: 302 FPTLQEPMPLWIKGFNGVMALAL-GAGTGLI 331
QE +G + L G GTG+I
Sbjct: 59 --RFQE---------HGHRPIVLIGGGTGMI 78
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 29.8 bits (68), Expect = 1.3
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 192 TAYNINVKGTQTILALAKRMKGLKSFVHVSTAY 224
A +N + I A VH ST Y
Sbjct: 76 LAQLLNATSVEAIAKAANETGAW--VVHYSTDY 106
>3dm3_A Replication factor A; probably plays AN essential for replication
of the chromosome, DNA recombination and repair; 2.40A
{Methanocaldococcus jannaschii}
Length = 105
Score = 28.1 bits (62), Expect = 1.6
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 319 VMALALGAGTGLIRVVQTDPNISMDVVPGDRV-INAMAALAWY 360
+ + + TG IRV D +DV GD V + +Y
Sbjct: 42 LKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRVRGYIREGYY 84
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid
binding, protei structure initiative; HET: ELA; 2.65A
{Streptococcus agalactiae}
Length = 285
Score = 27.9 bits (63), Expect = 4.6
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 26/110 (23%)
Query: 28 DEGKELLSDETLSPIQEFYKDQTIF--------------ITGATGFLGSLLVEKLLRCCP 73
EG + D ++ IQ + F ++ + +G+LL K +
Sbjct: 139 REGMDF--DVIVNKIQSQIEKIEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHFN 196
Query: 74 QIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123
+ KI++ + R +R+ + D + DI I H
Sbjct: 197 EEGKIVVYEKVRTEKKALKRLAEIVKEMTADG----------EYDIAIIH 236
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding
protein, lipid binding protein, PSI, structural
genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Length = 282
Score = 27.9 bits (63), Expect = 5.0
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 43/118 (36%)
Query: 28 DEGKELLSDETLSPIQEFYKDQTIF--------------ITGATGFLGSLLVEKLLRCCP 73
G L +E L+ +Q ++ I TG L SLL
Sbjct: 139 KAGASL--NEILAAVQAIKSKTELYIGVSTLENLVKGGRIGRVTGVLSSLL--------- 187
Query: 74 QIR--------KIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123
++ ++ L++ RG+ + T+ + +Y +I I++
Sbjct: 188 NVKVVMALKNDELKTLVKGRGNKTFTKWLDSYLAKNSHR----------PIAEIAISY 235
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 27.9 bits (63), Expect = 5.1
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT--QRVYNYFN----D 100
Q +FI G G +GS + +L + + L++RTR ++ + V+++F D
Sbjct: 2 AKQRVFIAGHRGMVGSAIRRQLEQ----RGDVELVLRTRDELNLLDSRAVHDFFASERID 57
Query: 101 AVF 103
V+
Sbjct: 58 QVY 60
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 28.0 bits (63), Expect = 5.4
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 38/111 (34%)
Query: 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS-------ITQR-----VY 95
++T+ ++GA G GS+ QI + R G +T
Sbjct: 161 NKTMVVSGAAGACGSVAG--------QIGHFLGCSRVVGICGTHEKCILLTSELGFDAAI 212
Query: 96 NYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF-N------DAVFDRMRL 139
NY D V +++R CP VD+ YF N D V +M
Sbjct: 213 NYKKDNVAEQLRESCPAG---VDV--------YFDNVGGNISDTVISQMNE 252
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2
PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 27.9 bits (63), Expect = 5.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 12/41 (29%)
Query: 190 IRTAYNINVKGTQTILALAKR--------MKGLKSFVHVST 222
I T N+ GT +L +A++ K F H+ST
Sbjct: 97 IET----NIVGTYALLEVARKYWSALGEDKKNNFRFHHIST 133
>3e0e_A Replication protein A; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 1.60A {Methanococcus maripaludis} PDB:
2k5v_A
Length = 97
Score = 26.4 bits (58), Expect = 5.5
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 319 VMALALGAGTGLIRVVQTDPNISMDVVPGDRV-INAMAALAWYFL 362
+ +L L TG IR + +V GD ++ + L
Sbjct: 39 LKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEVSGYVKQGYSGL 83
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 27.2 bits (61), Expect = 7.8
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 49 QTIFITGATGFLGSLLVEKLLR 70
+ +TGA+ G + E +
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVA 27
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair,
exonuclease, hydrolase, nuclease, nucleus,
phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A
{Homo sapiens} PDB: 3g65_C 3ggr_B
Length = 281
Score = 27.2 bits (60), Expect = 8.4
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 272 SYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPM 309
+ ++ + R V H++PI V+ + LQEP+
Sbjct: 115 TVSVELLSMSSSSRIVTHDIPIKVIPRKLW-KDLQEPV 151
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 27.4 bits (61), Expect = 8.5
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 47 KDQTIFITGA-TGFLGSLLVEKLLR 70
+ I ITGA +GF G L E L
Sbjct: 4 SKKIILITGASSGF-GRLTAEALAG 27
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein,
structural genomics, PSI, protein structure initiative;
NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Length = 137
Score = 26.6 bits (58), Expect = 8.7
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTF 160
I ++ ++FN A C + +++D +C E+DTF
Sbjct: 6 IKEQLISFFNQA--------CSTHQERLDFICSTRESDTF 37
>2dt8_A DEGV family protein; fatty acid binding, structural genomics,
NPPSFA, natio project on protein structural and
functional analyses; HET: PLM; 1.48A {Thermus
thermophilus}
Length = 280
Score = 27.2 bits (61), Expect = 9.6
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 42/118 (35%)
Query: 28 DEGKELLSDETLSPIQEFYKDQTIF--------------ITGATGFLGSLLVEKLLRCCP 73
+EG+ L + L+ ++ +D + I GA FLG+LL
Sbjct: 134 EEGQSL--EAVLAELERLRRDHFVRFSVATLEFLKRGGRIGGAQAFLGTLL--------- 182
Query: 74 QIR--------KIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123
++ ++ R RG + + F R ++ +
Sbjct: 183 NLKPVLTLKEGRVEAAGRARGEKKAREEILKAFRAWAEGR---------KRIRAYFLY 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.415
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,883,333
Number of extensions: 367795
Number of successful extensions: 1096
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1065
Number of HSP's successfully gapped: 137
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (25.9 bits)