BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17531
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S6O|A Chain A, Crystal Structure Of A Polysaccharide Deacetylase Family
          Protein From Burkholderia Pseudomallei
 pdb|3S6O|B Chain B, Crystal Structure Of A Polysaccharide Deacetylase Family
          Protein From Burkholderia Pseudomallei
 pdb|3S6O|C Chain C, Crystal Structure Of A Polysaccharide Deacetylase Family
          Protein From Burkholderia Pseudomallei
 pdb|3S6O|D Chain D, Crystal Structure Of A Polysaccharide Deacetylase Family
          Protein From Burkholderia Pseudomallei
          Length = 321

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 57 YEEMCENCWLHSDSSTKQHLQNVYGC 82
          YEE  ENC LH D +++Q L  + G 
Sbjct: 41 YEEGGENCVLHGDPASEQFLSEIVGA 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,395,227
Number of Sequences: 62578
Number of extensions: 222447
Number of successful extensions: 300
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 1
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)