Query psy17531
Match_columns 255
No_of_seqs 199 out of 1112
Neff 6.4
Searched_HMMs 46136
Date Sat Aug 17 00:54:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10447 HflBKC-binding inner 100.0 5.4E-32 1.2E-36 237.9 21.5 165 70-241 15-186 (219)
2 COG0670 Integral membrane prot 100.0 3.5E-30 7.6E-35 228.4 21.3 169 69-240 17-196 (233)
3 cd06181 BI-1-like BAX inhibito 100.0 1E-28 2.3E-33 215.2 22.1 167 72-242 2-178 (212)
4 KOG2322|consensus 100.0 1.3E-29 2.9E-34 221.7 14.5 167 69-239 41-219 (237)
5 KOG1629|consensus 100.0 1.8E-27 3.8E-32 202.9 14.5 171 63-241 14-190 (235)
6 PF01027 Bax1-I: Inhibitor of 99.9 1.8E-24 3.9E-29 186.3 19.9 164 73-240 1-174 (205)
7 KOG1630|consensus 99.7 6.9E-16 1.5E-20 136.6 12.1 167 68-241 107-292 (336)
8 PF12811 BaxI_1: Bax inhibitor 98.4 0.00015 3.3E-09 66.1 23.2 163 71-241 54-236 (274)
9 COG4760 Predicted membrane pro 93.3 2.4 5.2E-05 37.6 12.3 107 73-187 52-165 (276)
10 PF09925 DUF2157: Predicted me 87.5 14 0.00031 30.1 13.1 82 74-156 30-111 (145)
11 PF12273 RCR: Chitin synthesis 57.5 5.1 0.00011 32.2 1.0 21 109-129 4-24 (130)
12 PF11982 DUF3483: Domain of un 54.0 1.6E+02 0.0035 26.2 11.6 66 70-136 57-122 (224)
13 KOG3103|consensus 46.9 61 0.0013 29.3 6.1 53 165-219 144-196 (249)
14 PF12650 DUF3784: Domain of un 46.9 1.2E+02 0.0027 22.7 9.0 13 77-89 40-52 (97)
15 COG4705 Uncharacterized membra 41.6 2.6E+02 0.0057 25.0 12.0 75 131-205 71-153 (258)
16 PF05884 ZYG-11_interact: Inte 40.9 3.1E+02 0.0067 25.6 17.9 26 132-157 162-187 (299)
17 PF06123 CreD: Inner membrane 32.1 5E+02 0.011 25.5 13.0 25 68-92 288-312 (430)
18 PRK10408 putative L-valine exp 30.5 1.8E+02 0.0038 23.2 5.7 29 115-143 50-78 (111)
19 PRK11371 hypothetical protein; 29.6 1.4E+02 0.003 23.7 4.9 63 191-254 12-79 (126)
20 PF11026 DUF2721: Protein of u 29.0 2.8E+02 0.0061 22.2 7.0 27 190-216 91-117 (130)
21 PF09271 LAG1-DNAbind: LAG1, D 27.1 19 0.00042 29.7 -0.2 23 12-34 13-35 (140)
22 PF14362 DUF4407: Domain of un 25.7 5E+02 0.011 23.5 11.8 84 77-160 12-106 (301)
23 PF09775 Keratin_assoc: Kerati 25.7 3E+02 0.0065 22.6 6.4 53 162-214 5-58 (131)
24 PF04156 IncA: IncA protein; 22.0 3.8E+02 0.0082 22.4 6.8 22 195-216 41-62 (191)
25 PF14256 YwiC: YwiC-like prote 20.0 4.7E+02 0.01 21.0 12.7 58 133-197 55-112 (129)
26 TIGR00934 2a38euk potassium up 20.0 8.6E+02 0.019 25.9 10.0 56 198-253 586-659 (800)
No 1
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=100.00 E-value=5.4e-32 Score=237.88 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q psy17531 70 SSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCTGI 149 (255)
Q Consensus 70 ~~~~~fi~KVY~~La~~LliTa~~a~~~~~~~~~~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~l~lL~~ft~l~G~ 149 (255)
..+++|+||||.+++.+++.+++++++++..+....+ .++.+++.+++++.... .|++|.++.++++||+++|+
T Consensus 15 ~~~~~~Lr~vY~lLa~tl~~aa~ga~v~~~~~~~~~~--~~~~~~~~~gl~~~~~~----~~~~~~~~~llf~fT~~~G~ 88 (219)
T PRK10447 15 LSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPG--LILTLVGMYGLMFLTYK----TANKPTGILSAFAFTGFLGY 88 (219)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhH--HHHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999998753321122 35556777776665433 25789999999999999999
Q ss_pred HHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHhhchhHHHHHH---
Q psy17531 150 GLGPLLEMAIVV-NPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDRY--- 225 (255)
Q Consensus 150 ~Lg~i~~~~~~~-~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv~sl~niF~~s~~l~~~i--- 225 (255)
++||++.++... +|++|.+|+++|+++|+++|+||++|| ||+++||++|+++++++++++++|+|++++.++.++
T Consensus 89 ~lg~i~~~y~~~~~~~iV~~A~~~Ta~iF~~ls~~a~~tk-~Dfs~lg~~L~~~l~~li~~~l~~~F~~s~~~~~~~s~~ 167 (219)
T PRK10447 89 ILGPILNTYLSAGMGDVIALALGGTALVFFCCSAYVLTTR-KDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAV 167 (219)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999966433 679999999999999999999999996 599999999999999999999999999999888765
Q ss_pred ---HHHHHHHHHhHhhhhc
Q psy17531 226 ---LLVKNLGDDNKTARAS 241 (255)
Q Consensus 226 ---ly~Gl~a~DtQ~ik~~ 241 (255)
+|+|+++||||+|++.
T Consensus 168 g~llfsgyilyDTq~Ii~~ 186 (219)
T PRK10447 168 FILISSGAILFETSNIIHG 186 (219)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 8899999999999964
No 2
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=99.97 E-value=3.5e-30 Score=228.43 Aligned_cols=169 Identities=22% Similarity=0.316 Sum_probs=147.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Q psy17531 69 DSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMF----QSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFT 144 (255)
Q Consensus 69 ~~~~~~fi~KVY~~La~~LliTa~~a~~~~~~~~~----~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~l~lL~~ft 144 (255)
++.+++|++|||.++++++++|+++++........ ...++.++..+++++.++++....++ |.+.++.+++.|+
T Consensus 17 ~~~~~~f~~~vY~~~~~~L~~t~~~a~~~~~~~~~~~~~~~~~~~~vl~~a~l~~~~~~~~~~~~--s~~~~~~~~~~~t 94 (233)
T COG0670 17 DLGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLGLLSLSPPGFVLIIAGLAGVFFLSRKINK--SSPTALILFFVYT 94 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHH
Confidence 47899999999999999999999998875432211 12334688999999999999877665 7899999999999
Q ss_pred HHHHHHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHhhchhHHHH
Q psy17531 145 LCTGIGLGPLLEMAIVV-NPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFD 223 (255)
Q Consensus 145 ~l~G~~Lg~i~~~~~~~-~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv~sl~niF~~s~~l~~ 223 (255)
.++|++++|++..|... ++..|.+|+++|+++|+++|+|+++||| |++.+|++++++++++++++++|+|++|+.+++
T Consensus 95 ~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk~-Dls~l~~~l~~aligLiiasvvn~Fl~s~~l~~ 173 (233)
T COG0670 95 ALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTKR-DLSSLGSFLFMALIGLIIASLVNIFLGSSALHL 173 (233)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999955443 3467999999999999999999999975 999999999999999999999999999999888
Q ss_pred HH------HHHHHHHHHhHhhhh
Q psy17531 224 RY------LLVKNLGDDNKTARA 240 (255)
Q Consensus 224 ~i------ly~Gl~a~DtQ~ik~ 240 (255)
++ +|+|+++|||||||+
T Consensus 174 ~IS~lgvlifsgli~yDtq~I~~ 196 (233)
T COG0670 174 AISVLGVLIFSGLIAYDTQNIKR 196 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 899999999999999
No 3
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=99.97 E-value=1e-28 Score=215.22 Aligned_cols=167 Identities=26% Similarity=0.367 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q psy17531 72 TKQHLQNVYGCLTLGMLAATAGAYLQLTQAM----FQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCT 147 (255)
Q Consensus 72 ~~~fi~KVY~~La~~LliTa~~a~~~~~~~~----~~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~l~lL~~ft~l~ 147 (255)
||+|+||||.+++.|+++|+++++.....+. .++.+..|+..+.++++.+.+.++++++||+|.|+.++.+|++++
T Consensus 2 ~~~fl~kVY~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~ 81 (212)
T cd06181 2 RRGFLRKVYGLLALQLLVTALVAYLGMFSPPLRNVLSNTPLGWLLLLAFLGLVILLFCCRIKRRSSPANLILLFLFTALM 81 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999988665421 123345677888888888888887777789999999999999999
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHhhchhHHHHHH--
Q psy17531 148 GIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDRY-- 225 (255)
Q Consensus 148 G~~Lg~i~~~~~~~~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv~sl~niF~~s~~l~~~i-- 225 (255)
|++++|++. .++++.|.+|+++|+++|++++++|++|| ||++++|++++++++++++.+++|+|++++..+.++
T Consensus 82 g~~l~~~~~---~~~~~~i~~A~~~T~~if~~l~l~a~~tk-~d~~~~g~~l~~~~~~l~~~~l~~~f~~~~~~~~~~~~ 157 (212)
T cd06181 82 GVTLGPILS---VYTAASVLQAFGITAAVFGGLSLYALTTK-RDFSFLGGFLFMGLIVLIVASLVNIFLQSPALQLAISA 157 (212)
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 999999998 77888899999999999999999999997 699999999999999999999999999988777654
Q ss_pred ----HHHHHHHHHhHhhhhcc
Q psy17531 226 ----LLVKNLGDDNKTARAST 242 (255)
Q Consensus 226 ----ly~Gl~a~DtQ~ik~~~ 242 (255)
+|+|+++||||+|++..
T Consensus 158 ~g~~lf~~~l~~Dtq~i~~~~ 178 (212)
T cd06181 158 LGVLLFSGYILYDTQLIIGGY 178 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999998643
No 4
>KOG2322|consensus
Probab=99.96 E-value=1.3e-29 Score=221.69 Aligned_cols=167 Identities=17% Similarity=0.194 Sum_probs=148.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhh-hhHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Q psy17531 69 DSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQ----AMFQ-STLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGF 143 (255)
Q Consensus 69 ~~~~~~fi~KVY~~La~~LliTa~~a~~~~~~----~~~~-~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~l~lL~~f 143 (255)
...|++|+||||+++++||++|.+.+...... .+.+ +++++|++++..++..+.+.|+.+.+|++|+|+++|..|
T Consensus 41 ~~iR~~FiRKVYsIl~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~vt~l~l~c~~~~r~k~P~N~ilL~iF 120 (237)
T KOG2322|consen 41 QSIRWGFIRKVYSILSIQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIVTYLSLACCEGLRRKSPVNLILLGIF 120 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHHHHHHHHccCcccccCcHHHhHHHHH
Confidence 47899999999999999999998887654322 3443 556779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHH-HHHHhhchhHHH
Q psy17531 144 TLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLS-LANLFFGSKLLF 222 (255)
Q Consensus 144 t~l~G~~Lg~i~~~~~~~~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv~s-l~niF~~s~~l~ 222 (255)
|.++++++|.++. ++++.+|++|+.+|+++++++++|+++|| +||+.+|++++..++++++.+ |..+|..+++++
T Consensus 121 T~a~s~~~g~~~a---~~~~~~VL~Al~IT~~V~~slt~~t~qtK-~DFt~~~~~l~~~l~vl~~~g~I~~~f~~~~~~~ 196 (237)
T KOG2322|consen 121 TLAEAFMTGLVTA---FYDAKVVLLALIITTVVVLSLTLFTLQTK-YDFTSLGGFLFALLIVLLLFGLIFLFFPYGPILV 196 (237)
T ss_pred HHHHHHHHHHHHH---HHhhHHHHHHHHHHHhheeeEEEEEEeec-cchhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999 89999999999999999999999999997 599999999999999999999 445566777777
Q ss_pred HHH------HHHHHHHHHhHhhh
Q psy17531 223 DRY------LLVKNLGDDNKTAR 239 (255)
Q Consensus 223 ~~i------ly~Gl~a~DtQ~ik 239 (255)
.++ +|.++++||||.+-
T Consensus 197 ~vya~lgAllf~~yl~~Dtqllm 219 (237)
T KOG2322|consen 197 MVYAALGALLFCGYLVYDTQLLM 219 (237)
T ss_pred HHHHHHHHHHHhHHHHhhhHHHh
Confidence 644 89999999999873
No 5
>KOG1629|consensus
Probab=99.95 E-value=1.8e-27 Score=202.90 Aligned_cols=171 Identities=37% Similarity=0.630 Sum_probs=154.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Q psy17531 63 NCWLHSDSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIG 142 (255)
Q Consensus 63 ~~f~~~~~~~~~fi~KVY~~La~~LliTa~~a~~~~~~~~~~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~l~lL~~ 142 (255)
.|+++++|.+|+|++|||..++..++.+|+|||+.+.++ ..+ .++.++.+++++|+.|.++. +..++.+|++
T Consensus 14 ~n~~~~sP~vq~HLkkvY~tl~~~~~asA~GAylhM~~n--igG---~lsalg~l~~miwl~~~py~---hk~rl~lL~~ 85 (235)
T KOG1629|consen 14 LNFSHISPAVQNHLKKVYLTLALALFASAAGAYLHMVWN--IGG---LLSALGSLGLMIWLMFTPYE---HKTRLGLLFL 85 (235)
T ss_pred hccccCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhh--ccc---hHHHHHHHHHHHHHhCCCCc---cchhHHHHHH
Confidence 468899999999999999999999999999999988543 233 68889999999999988875 4459999999
Q ss_pred HHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHhhchhHHH
Q psy17531 143 FTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLF 222 (255)
Q Consensus 143 ft~l~G~~Lg~i~~~~~~~~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv~sl~niF~~s~~l~ 222 (255)
|+++.|.++||.+.+++..||+++++||.+|+++|.|+|+.|+.++||.+.++||.|.+++..|...++.|.|++|.++.
T Consensus 86 fa~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSasAmlArrreYLylGg~L~s~~s~l~wl~l~n~~fgS~~v~ 165 (235)
T KOG1629|consen 86 FAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASAMLARRREYLYLGGLLSSGLSLLLWLSLANSFFGSIWVF 165 (235)
T ss_pred HHHHcCCcccchhhheeccChHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHH------HHHHHHHHhHhhhhc
Q psy17531 223 DRYL------LVKNLGDDNKTARAS 241 (255)
Q Consensus 223 ~~il------y~Gl~a~DtQ~ik~~ 241 (255)
.+.+ |.|++.||||.|-|.
T Consensus 166 ~~qLY~Gllvfvg~ivvdTQ~IiEK 190 (235)
T KOG1629|consen 166 KFQLYVGLLVFVGFIVVDTQEIIEK 190 (235)
T ss_pred HHHHHHHHHHhheeEEeeHHHHHHH
Confidence 6554 556778999999664
No 6
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=99.93 E-value=1.8e-24 Score=186.28 Aligned_cols=164 Identities=30% Similarity=0.436 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhhHHHHHHHHHHHHHHHHHHhhcccccchhh--HHHHHHHHHHHHH
Q psy17531 73 KQHLQNVYGCLTLGMLAATAGAYLQLTQAM-F-QSTLVMLLSSVGAFGFLIYVMSTKNQINSNRN--RTGAFIGFTLCTG 148 (255)
Q Consensus 73 ~~fi~KVY~~La~~LliTa~~a~~~~~~~~-~-~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~--~l~lL~~ft~l~G 148 (255)
|+|++|||.+++.|+.+|+++++.....+. . +..+..|+..+++++..+...+..+++|++|. ++.++..|+.++|
T Consensus 1 ~~fl~kvy~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~~~g 80 (205)
T PF01027_consen 1 RQFLRKVYGLLALQLAITALGAFLVLASPLFLSQHFPLSWVSLIVSLVLLIFLYILFNRRRRFPSNVALILLFIFTLLEG 80 (205)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 689999999999999999888887654432 2 22334577888888887665555443334444 4999999999999
Q ss_pred HHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHhhchhHHHHHH---
Q psy17531 149 IGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDRY--- 225 (255)
Q Consensus 149 ~~Lg~i~~~~~~~~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv~sl~niF~~s~~l~~~i--- 225 (255)
+.+++++. .+++++|.+|+..|+++|++++++++++| ||++.++++++.+++++++++++++|++++.++.++
T Consensus 81 ~~~~~i~~---~~~~~~v~~a~~~T~~if~~l~~~a~~~~-~d~~~~~~~l~~~l~~l~i~~l~~~f~~~~~~~~~is~~ 156 (205)
T PF01027_consen 81 LLLGPISS---FYDPSIVLQAFLLTAAIFIALTLYAFFTK-RDFTRWGGILFIGLIGLIIFGLVSIFLPSSPLYLLISYI 156 (205)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcccchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999998 67899999999999999999999999996 599999999999999999999999999887666543
Q ss_pred ---HHHHHHHHHhHhhhh
Q psy17531 226 ---LLVKNLGDDNKTARA 240 (255)
Q Consensus 226 ---ly~Gl~a~DtQ~ik~ 240 (255)
+|+++++||||+||+
T Consensus 157 ~~~lf~~~l~~Dt~~i~~ 174 (205)
T PF01027_consen 157 GILLFSLYLVYDTQRIIR 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999999984
No 7
>KOG1630|consensus
Probab=99.66 E-value=6.9e-16 Score=136.59 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=135.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hhhHHHHHHHHHHHHHHHHHH---hhcccccchhhHHHH
Q psy17531 68 SDSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQ----AMF-QSTLVMLLSSVGAFGFLIYVM---STKNQINSNRNRTGA 139 (255)
Q Consensus 68 ~~~~~~~fi~KVY~~La~~LliTa~~a~~~~~~----~~~-~~~~~~~v~~i~~l~~~~~l~---~~~~~~r~~~~~l~l 139 (255)
..+.+|+.|..+|.+++.++.+|++.+....-+ ++. +.+ |++.++.++.++.-. ..++.......+...
T Consensus 107 WPqyVrdRI~sTYay~~gS~~lTA~savA~~rs~~lm~l~~rgg---~va~~~tla~mi~sG~larsi~Yq~g~gaKhLA 183 (336)
T KOG1630|consen 107 WPQYVRDRIHSTYAYLAGSCGLTAASAVAISRSPALMNLMMRGG---WVAIGVTLAAMIGSGMLARSIEYQPGPGAKHLA 183 (336)
T ss_pred cHHHHHHHHHHHHHHHhccHHHHHHHHHHHhccHHHHHHHhcCc---hHHHHHHHHHHHhcchhhhcccCCCCccHHHHH
Confidence 456789999999999999999999877653211 222 333 889999988888543 444554345566677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHhhchh
Q psy17531 140 FIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSK 219 (255)
Q Consensus 140 L~~ft~l~G~~Lg~i~~~~~~~~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv~sl~niF~~s~ 219 (255)
+.+.+..+|..+.|+|. .++.+...|.+.|+.|.++||..|...++++|..||+.|-+|+-+.++.++.++|++..
T Consensus 184 W~lHc~vlGAV~APlc~----lgGPiLtrAa~YTaGIVGgLStvA~cAPSeKFL~MggPLaiGlGvVFvssl~sm~LPPt 259 (336)
T KOG1630|consen 184 WLLHCGVLGAVVAPLCF----LGGPILTRAAWYTAGIVGGLSTVAACAPSEKFLNMGGPLAIGLGVVFVSSLGSMFLPPT 259 (336)
T ss_pred HHHHHHHHHHHHhhHHh----cccHHHHHHHHHHccccchhhhhhhcCcHHHHhhcCCCceeeeeeEehhhhhhhhcCCc
Confidence 78999999999999984 67779999999999999999999999999999999999999999999999999999743
Q ss_pred -H----HHH------HHHHHHHHHHHhHhhhhc
Q psy17531 220 -L----LFD------RYLLVKNLGDDNKTARAS 241 (255)
Q Consensus 220 -~----l~~------~ily~Gl~a~DtQ~ik~~ 241 (255)
+ +.. .++|+|+++|||||+-.|
T Consensus 260 ta~GA~LaSmslYGGLiLFS~FLLYDTQr~vk~ 292 (336)
T KOG1630|consen 260 TALGAGLASMSLYGGLILFSGFLLYDTQRVVKS 292 (336)
T ss_pred hhhhhhhHHHHHhccHHHHHHHHHHhHHHHHHH
Confidence 1 222 458899999999999754
No 8
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=98.43 E-value=0.00015 Score=66.11 Aligned_cols=163 Identities=12% Similarity=0.061 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q psy17531 71 STKQHLQNVYGCLTLGMLAATAGAYLQLTQAM-FQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCTGI 149 (255)
Q Consensus 71 ~~~~fi~KVY~~La~~LliTa~~a~~~~~~~~-~~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~l~lL~~ft~l~G~ 149 (255)
..++.+.|+-..+++- .++++..+.....+. ...+ +.++..++.+++.+..++.++. ++| .+-..|+++||+
T Consensus 54 T~~~vv~KT~~ll~ll-~~~a~~~~~~~~~~~~~~~~-~~~~g~i~glvl~lv~~F~~~~--~sp---~l~~~YA~~EG~ 126 (274)
T PF12811_consen 54 TVDGVVNKTGILLGLL-VVTAAVSWFLIPSNPGLAMP-LAIVGAIGGLVLALVISFKRKV--WSP---ALAPIYAVLEGV 126 (274)
T ss_pred ccccHHHHHHHHHHHH-HHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHHHHHHhCCcc--CCh---HHHHHHHHHHHH
Confidence 4467788886555443 344555443221110 0111 1245556666666666664332 122 223579999999
Q ss_pred HHHHHHHHHh-hh---ChhHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhhhHHHHHHHHHHHHHHHHHHhhch------
Q psy17531 150 GLGPLLEMAI-VV---NPSIVVTAFMLTTLLFVSFTLAAIFARE-GQWIYIGGSLMTMLSTLITLSLANLFFGS------ 218 (255)
Q Consensus 150 ~Lg~i~~~~~-~~---~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~-rDft~lgg~L~~gli~Liv~sl~niF~~s------ 218 (255)
.+|.+..+.. .+ -|++|.+|.+.|.++|+++-+ .|.++. |--..+.++...+.++.++..++|+.+.-
T Consensus 127 flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~-lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~lf~~~l~ 205 (274)
T PF12811_consen 127 FLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLA-LYKTGIIRVTPKFRRIVMIATFGIALFYLVNLVLSLFVGSLR 205 (274)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH-HHHhCCeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999876432 12 288999999999999998765 777754 33446788888888888888888865431
Q ss_pred --hHHHHHH------HHHHHHHHHhHhhhhc
Q psy17531 219 --KLLFDRY------LLVKNLGDDNKTARAS 241 (255)
Q Consensus 219 --~~l~~~i------ly~Gl~a~DtQ~ik~~ 241 (255)
..+.+.+ +=+--++-|-+.|++-
T Consensus 206 ~~gplgI~~slv~v~iAa~sLllDFd~Ie~~ 236 (274)
T PF12811_consen 206 DGGPLGIGFSLVVVGIAALSLLLDFDFIEQG 236 (274)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1222211 1122456888888764
No 9
>COG4760 Predicted membrane protein [Function unknown]
Probab=93.29 E-value=2.4 Score=37.61 Aligned_cols=107 Identities=10% Similarity=0.146 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Q psy17531 73 KQHLQNVYGCLTLGMLAATAGAYLQLTQA-MFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCTGIGL 151 (255)
Q Consensus 73 ~~fi~KVY~~La~~LliTa~~a~~~~~~~-~~~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~l~lL~~ft~l~G~~L 151 (255)
.+.+.|+=..++.- ++|+++++.....+ .... .+..+..++.+++++...+.+. +.+| +.-..|+.+||+-+
T Consensus 52 ddvvtkTG~tLav~-~vtavvs~~~~lv~p~La~-~ltlvGaiGGlilvLvatFgkK--~~sp---ai~l~YAv~EGlFl 124 (276)
T COG4760 52 DDVVTKTGATLAVL-LVTAVVSFFLVLVNPALAM-PLTLVGAIGGLILVLVATFGKK--QWSP---AIVLSYAVLEGLFL 124 (276)
T ss_pred cchhhhhhHHHHHH-HHHHHHHHHHHhcCHHhcc-cHhHHHHhhhHHHHHHHHhccc--cCCh---HHHHHHHHHHHHHH
Confidence 46677776666654 56677766533221 1111 1245666777777776655432 2333 23357999999999
Q ss_pred HHHHHHHhh---h---ChhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17531 152 GPLLEMAIV---V---NPSIVVTAFMLTTLLFVSFTLAAIFA 187 (255)
Q Consensus 152 g~i~~~~~~---~---~~~~V~~A~~~Ta~iF~~lSl~a~~T 187 (255)
|.+...... + .+..|.+|.+.|-.+|.+|- ..|.|
T Consensus 125 GaiS~lla~ftV~~anaGgligqAvLgT~Gvf~gML-~vYkt 165 (276)
T COG4760 125 GAISFLLANFTVYEANAGGLIGQAVLGTFGVFFGML-VVYKT 165 (276)
T ss_pred HHHHHHhccceEEeccccceeHHHHHHHHHHHHHHH-HHHhc
Confidence 988732211 2 36899999999999999984 45654
No 10
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=87.50 E-value=14 Score=30.11 Aligned_cols=82 Identities=10% Similarity=-0.113 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Q psy17531 74 QHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCTGIGLGP 153 (255)
Q Consensus 74 ~fi~KVY~~La~~LliTa~~a~~~~~~~~~~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~l~lL~~ft~l~G~~Lg~ 153 (255)
++..++..++++-++..++..++..++.-+. ....+....+.+...........+++++..+-.++.+-+++.|..++-
T Consensus 30 ~~~~~~l~~lGall~~~gii~fvA~nW~~i~-~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ga~ial 108 (145)
T PF09925_consen 30 SWLARILLYLGALLLGLGIILFVAANWDDIP-RLAKLGLLLALLLLSYVGGFWLWRRRSPRLAEALLLLGAVLFGALIAL 108 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999888777776665543221 111233333333333333333222335667777778888888888877
Q ss_pred HHH
Q psy17531 154 LLE 156 (255)
Q Consensus 154 i~~ 156 (255)
+-.
T Consensus 109 igQ 111 (145)
T PF09925_consen 109 IGQ 111 (145)
T ss_pred HHh
Confidence 776
No 11
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=57.47 E-value=5.1 Score=32.23 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q psy17531 109 MLLSSVGAFGFLIYVMSTKNQ 129 (255)
Q Consensus 109 ~~v~~i~~l~~~~~l~~~~~~ 129 (255)
.|+.+++.+++++.+.++.++
T Consensus 4 l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 12
>PF11982 DUF3483: Domain of unknown function (DUF3483); InterPro: IPR021872 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length. This domain is found associated with PF02754 from PFAM.
Probab=53.95 E-value=1.6e+02 Score=26.21 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhH
Q psy17531 70 SSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNR 136 (255)
Q Consensus 70 ~~~~~fi~KVY~~La~~LliTa~~a~~~~~~~~~~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~ 136 (255)
-.|..++.|+---.+.|++.+.+-+.+...-.+ ...++.|..+.+.+....+..+..++++|+|.+
T Consensus 57 VaRd~y~artHvatAGG~v~a~~L~~l~~~~~l-~~~~L~w~ll~a~~~m~~Ga~fV~~RR~~~P~R 122 (224)
T PF11982_consen 57 VARDPYIARTHVATAGGFVAASALVILVYGLGL-YSRILDWLLLAAALAMFVGALFVARRRRNPPAR 122 (224)
T ss_pred eeccHHHHhhhHHHHhHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 356789999999899998766554443322112 334556777776666655555554444455544
No 13
>KOG3103|consensus
Probab=46.95 E-value=61 Score=29.30 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHhhchh
Q psy17531 165 IVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSK 219 (255)
Q Consensus 165 ~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv~sl~niF~~s~ 219 (255)
+..++++.|..++.-+.+-+ +|.-.|.-.-++|--+++=+++.|.+++|++..
T Consensus 144 Iygi~~~gsl~iy~L~nlm~--~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~ 196 (249)
T KOG3103|consen 144 IYGISLLGSLSIYFLLNLMS--NKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQ 196 (249)
T ss_pred EeeeHHHHHHHHHHHHHHHh--hcCcceeeehHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45567777888888888877 556688889999999999999999999998743
No 14
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=46.90 E-value=1.2e+02 Score=22.74 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy17531 77 QNVYGCLTLGMLA 89 (255)
Q Consensus 77 ~KVY~~La~~Lli 89 (255)
+|....++..+++
T Consensus 40 ~~l~r~~g~~~~~ 52 (97)
T PF12650_consen 40 KKLCRFMGKFMLI 52 (97)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333433333
No 15
>COG4705 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=41.61 E-value=2.6e+02 Score=25.03 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=42.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhh--h-ChhHHHH-HHHHHHHHHH----HHHHHHHHhcccchhhhhHHHHHH
Q psy17531 131 NSNRNRTGAFIGFTLCTGIGLGPLLEMAIV--V-NPSIVVT-AFMLTTLLFV----SFTLAAIFAREGQWIYIGGSLMTM 202 (255)
Q Consensus 131 r~~~~~l~lL~~ft~l~G~~Lg~i~~~~~~--~-~~~~V~~-A~~~Ta~iF~----~lSl~a~~Tk~rDft~lgg~L~~g 202 (255)
|-+|+.+-+-.+-+-.-|-.++....--+. | .++.|.. |++.+.++-- .+|++...||+|+..+|+.+|+.-
T Consensus 71 rY~P~lYWlaiv~tstaGT~isD~m~~tlGl~~~t~s~i~s~aL~av~aiWy~sertLSI~~I~~~~~El~YW~AIl~s~ 150 (258)
T COG4705 71 RYVPWLYWLAIVLTSTAGTEISDLMDRTLGLGYATGSAILSVALLAVLAIWYYSERTLSIYPIVTKRRELFYWLAILFSN 150 (258)
T ss_pred ccchHHHHHHHHHHHhccchhHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHhhccceeEEeeeccchhHHHHHHHHHhc
Confidence 467777777667777777777666542111 1 1222222 2222222221 366677778888888888888765
Q ss_pred HHH
Q psy17531 203 LST 205 (255)
Q Consensus 203 li~ 205 (255)
..+
T Consensus 151 sLG 153 (258)
T COG4705 151 SLG 153 (258)
T ss_pred chh
Confidence 443
No 16
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=40.87 E-value=3.1e+02 Score=25.65 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17531 132 SNRNRTGAFIGFTLCTGIGLGPLLEM 157 (255)
Q Consensus 132 ~~~~~l~lL~~ft~l~G~~Lg~i~~~ 157 (255)
+.......+..+++.+|+..|-.+++
T Consensus 162 s~~~~R~~ll~~a~~QGvL~Ga~ls~ 187 (299)
T PF05884_consen 162 SLAESRLALLFFALFQGVLVGAGLSH 187 (299)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444556789999999999999984
No 17
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=32.09 E-value=5e+02 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q psy17531 68 SDSSTKQHLQNVYGCLTLGMLAATA 92 (255)
Q Consensus 68 ~~~~~~~fi~KVY~~La~~LliTa~ 92 (255)
.|..++..=.-=|++|.++|-+.++
T Consensus 288 vd~Y~~~~Ra~KYgiLFI~LTF~~f 312 (430)
T PF06123_consen 288 VDHYQKSERAVKYGILFIGLTFLAF 312 (430)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444559999998765443
No 18
>PRK10408 putative L-valine exporter; Provisional
Probab=30.47 E-value=1.8e+02 Score=23.20 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHH
Q psy17531 115 GAFGFLIYVMSTKNQINSNRNRTGAFIGF 143 (255)
Q Consensus 115 ~~l~~~~~l~~~~~~~r~~~~~l~lL~~f 143 (255)
+++..+++.+..++..+.+.+-...+..|
T Consensus 50 AsIcaLLVVS~~P~v~~~~~k~~ptlvGf 78 (111)
T PRK10408 50 ASICALLVVSTAPEVMHDPRKLLPTLVGF 78 (111)
T ss_pred HHHHHHHHHhcChHHHhChHHHHHHHHHH
Confidence 33334444444444443344444444333
No 19
>PRK11371 hypothetical protein; Provisional
Probab=29.63 E-value=1.4e+02 Score=23.73 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=32.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH-----HHhHhhhhccccceeeeeeccc
Q psy17531 191 QWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDRYLLVKNLG-----DDNKTARASTLVMWVKIMFYGT 254 (255)
Q Consensus 191 Dft~lgg~L~~gli~Liv~sl~niF~~s~~l~~~ily~Gl~a-----~DtQ~ik~~~~~~~~~~~~~~~ 254 (255)
..+-..-++...++-++..-++..|....+..+++++.=++- .+.||.|+|.-. +.|--.+||
T Consensus 12 ~isr~ryi~sf~lin~if~~li~~~~~~~~~~l~i~~tillhylvinmncqr~rdsgf~-yik~yv~gt 79 (126)
T PRK11371 12 KISRRRYIFSFILINFIFAFLIIFFNDGEAGFLVIVSTILLHYLVINMNCQRLRDSGFI-YIKTYVFGT 79 (126)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHhcCCceehhHHHHHHHHHHheecchHhhhhCCcE-EEehhhHHH
Confidence 333333334444444444444555555555555555554433 478999999643 444444443
No 20
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=28.98 E-value=2.8e+02 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhh
Q psy17531 190 GQWIYIGGSLMTMLSTLITLSLANLFF 216 (255)
Q Consensus 190 rDft~lgg~L~~gli~Liv~sl~niF~ 216 (255)
.|+..+...+|.+...+++.+++.++.
T Consensus 91 ~~~~~~~~~lF~~am~~l~~sl~~fl~ 117 (130)
T PF11026_consen 91 IDLSWLVAILFVLAMLLLIASLVLFLR 117 (130)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388899999999988888888876654
No 21
>PF09271 LAG1-DNAbind: LAG1, DNA binding; InterPro: IPR015351 This domain is found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. It adopts a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding []. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3IAG_C 3BRG_C 3NBN_A 2F8X_C 3V79_C.
Probab=27.15 E-value=19 Score=29.74 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=13.6
Q ss_pred ccccCCCCCCCCCcccccccccc
Q psy17531 12 TMAISSRGPSPIPVEQRLGIYWE 34 (255)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~ 34 (255)
-||.-+|.++|+|.....|-.|.
T Consensus 13 SYG~EKRF~CPPP~v~L~G~~w~ 35 (140)
T PF09271_consen 13 SYGNEKRFFCPPPCVYLSGPGWK 35 (140)
T ss_dssp B-TT-----SS--EEEEESTHHH
T ss_pred hhcccccccCCCCeEEEECCCcC
Confidence 58999999999999999999996
No 22
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.68 E-value=5e+02 Score=23.46 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHH-----HHHhhcccccchhhHHHHHHH---HHH
Q psy17531 77 QNVYGCLTLGMLAATAGAYLQLTQ---AMFQSTLVMLLSSVGAFGFLI-----YVMSTKNQINSNRNRTGAFIG---FTL 145 (255)
Q Consensus 77 ~KVY~~La~~LliTa~~a~~~~~~---~~~~~~~~~~v~~i~~l~~~~-----~l~~~~~~~r~~~~~l~lL~~---ft~ 145 (255)
|+-|..++..+++|++.+.+.... ..+..+++.-+...+..++++ ++..+..+.+....++..... .++
T Consensus 12 r~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAv 91 (301)
T PF14362_consen 12 RNKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAV 91 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhh
Q psy17531 146 CTGIGLGPLLEMAIV 160 (255)
Q Consensus 146 l~G~~Lg~i~~~~~~ 160 (255)
++|+.+|..+...++
T Consensus 92 liaivIs~pl~l~iF 106 (301)
T PF14362_consen 92 LIAIVISEPLELKIF 106 (301)
T ss_pred HHHHHHHHHHHHHHH
No 23
>PF09775 Keratin_assoc: Keratinocyte-associated protein 2; InterPro: IPR018614 Members of this family comprise various keratinocyte-associated proteins. The function of these proteins is not known.
Probab=25.65 E-value=3e+02 Score=22.61 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=41.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhc-ccchhhhhHHHHHHHHHHHHHHHHHH
Q psy17531 162 NPSIVVTAFMLTTLLFVSFTLAAIFAR-EGQWIYIGGSLMTMLSTLITLSLANL 214 (255)
Q Consensus 162 ~~~~V~~A~~~Ta~iF~~lSl~a~~Tk-~rDft~lgg~L~~gli~Liv~sl~ni 214 (255)
++.+...+.....++|.+|=.|.-+-. .+-.+-+||++.+.+..+.+..+.|+
T Consensus 5 t~~S~~lS~ll~vlifa~mq~~k~~l~sS~~~ti~GGflgS~lF~~~LTavgN~ 58 (131)
T PF09775_consen 5 TGTSLLLSSLLSVLIFAGMQMYKPWLASSQLLTILGGFLGSLLFIFLLTAVGNL 58 (131)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhHHHhccchHHHHHHHHHHHHHHHHHHHHhcch
Confidence 455667788888999999999886643 24677889999998888888887775
No 24
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.97 E-value=3.8e+02 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q psy17531 195 IGGSLMTMLSTLITLSLANLFF 216 (255)
Q Consensus 195 lgg~L~~gli~Liv~sl~niF~ 216 (255)
+|..+....++++..++.++..
T Consensus 41 lg~~~lAlg~vL~~~g~~~~~~ 62 (191)
T PF04156_consen 41 LGIALLALGVVLLSLGLLCLLS 62 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555556655554
No 25
>PF14256 YwiC: YwiC-like protein
Probab=20.04 E-value=4.7e+02 Score=21.03 Aligned_cols=58 Identities=10% Similarity=-0.012 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhH
Q psy17531 133 NRNRTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGG 197 (255)
Q Consensus 133 ~~~~l~lL~~ft~l~G~~Lg~i~~~~~~~~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg 197 (255)
.+.......+|+.......-+.+ .++|..+..+. -.+.+++..++.-..|| |=+-+..
T Consensus 55 ~~~~~~~~~~Yg~~a~~~~l~~l----~~~p~ll~~~~--~~~pl~~v~~~~~~~~~-eRsLlnd 112 (129)
T PF14256_consen 55 RPRYLKWALIYGAIALVFGLPAL----LYAPRLLWWAL--LFLPLFAVNLYFAKRKR-ERSLLND 112 (129)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHH--HHHHHHHHHHHHHHhcC-chhHHHh
Confidence 33444556777766665555544 46788887776 45555566655555433 4443333
No 26
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=20.00 E-value=8.6e+02 Score=25.94 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhh---chh------HHHHHH--HH-------HHHHHHHhHhhhhccccceeeeeecc
Q psy17531 198 SLMTMLSTLITLSLANLFF---GSK------LLFDRY--LL-------VKNLGDDNKTARASTLVMWVKIMFYG 253 (255)
Q Consensus 198 ~L~~gli~Liv~sl~niF~---~s~------~l~~~i--ly-------~Gl~a~DtQ~ik~~~~~~~~~~~~~~ 253 (255)
+++..+++|++.+.+-+++ .++ .-+-+. +| +|+-.+|...+..++++..+-.||-|
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVstRTAGFntVdls~Lspatlvl~iiLMyIG 659 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVSTRTAGFTVVDLSQLHPAIQVSYMLMMYVS 659 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhcccccccccccchHhcChhHHHHHHHHHHhc
Confidence 6777777788888776664 222 111111 33 68999999999999998888888765
Done!