Query psy17531
Match_columns 255
No_of_seqs 199 out of 1112
Neff 6.4
Searched_HMMs 29240
Date Sat Aug 17 00:55:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v50_A Multidrug resistance pr 30.4 4.5E+02 0.016 26.8 13.3 18 166-183 442-459 (1052)
2 1pfi_A Major coat protein of P 20.8 93 0.0032 19.6 3.0 25 188-212 15-39 (46)
3 3kp9_A Vkorc1/thioredoxin doma 11.9 7E+02 0.024 21.5 9.9 32 177-208 138-169 (291)
4 1q90_L Cytochrome B6F complex 10.3 2.5E+02 0.0084 16.6 2.8 17 165-181 10-26 (32)
5 3brd_A LIN-12 and GLP-1 phenot 9.9 80 0.0027 29.9 0.8 24 12-35 42-65 (477)
6 1waz_A MERF; protein structure 9.5 1.5E+02 0.005 19.0 1.6 16 174-189 28-43 (46)
7 4dx5_A Acriflavine resistance 9.2 1.4E+03 0.046 23.1 14.1 20 134-153 389-408 (1057)
8 3iag_C Recombining binding pro 9.2 90 0.0031 29.1 0.8 25 12-36 33-57 (422)
9 1q90_R Cytochrome B6-F complex 8.0 4.7E+02 0.016 16.7 5.2 13 69-81 8-20 (49)
10 2i68_A Protein EMRE; transmemb 7.6 7.5E+02 0.026 18.8 8.6 106 80-191 4-109 (137)
No 1
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=30.36 E-value=4.5e+02 Score=26.77 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17531 166 VVTAFMLTTLLFVSFTLA 183 (255)
Q Consensus 166 V~~A~~~Ta~iF~~lSl~ 183 (255)
|+.+.+.|++.|..+.+.
T Consensus 442 il~t~ltt~~~f~pl~~~ 459 (1052)
T 2v50_A 442 LVGIAMVLSAVFLPMAFF 459 (1052)
T ss_dssp THHHHHHHHHTTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445566677777777654
No 2
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=20.82 E-value=93 Score=19.64 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.2
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHH
Q psy17531 188 REGQWIYIGGSLMTMLSTLITLSLA 212 (255)
Q Consensus 188 k~rDft~lgg~L~~gli~Liv~sl~ 212 (255)
-+.|....|+.+.-.|..+.+++++
T Consensus 15 G~~Dm~si~~~IVGaLvil~VAGLi 39 (46)
T 1pfi_A 15 GQGDMKAIGGYIVGALVILAVAGLI 39 (46)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999989888888875
No 3
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=11.90 E-value=7e+02 Score=21.50 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHH
Q psy17531 177 FVSFTLAAIFAREGQWIYIGGSLMTMLSTLIT 208 (255)
Q Consensus 177 F~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv 208 (255)
...+.++.+.-+.+++.-.|..++.++++-++
T Consensus 138 ~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 169 (291)
T 3kp9_A 138 ILVAGLGLVTVLGHRWLDGGKLAFSYILVAFL 169 (291)
T ss_dssp HHHHHHHHHHHSSCHHHHCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhHHHHHHHHHHHH
Confidence 33444444445556777889988887665444
No 4
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=10.26 E-value=2.5e+02 Score=16.59 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17531 165 IVVTAFMLTTLLFVSFT 181 (255)
Q Consensus 165 ~V~~A~~~Ta~iF~~lS 181 (255)
-...|+..|.+.|.+++
T Consensus 10 fL~~al~~t~~lfiGL~ 26 (32)
T 1q90_L 10 LLIGALVFTLGIYLGLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44667778888888875
No 5
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=9.94 E-value=80 Score=29.94 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.6
Q ss_pred ccccCCCCCCCCCccccccccccc
Q psy17531 12 TMAISSRGPSPIPVEQRLGIYWEE 35 (255)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (255)
-||.-+|.++|+|..+..|-.|..
T Consensus 42 SYG~EKRFfCPPP~vyL~G~~W~~ 65 (477)
T 3brd_A 42 SYGNEKRFFCPPPCIYLIGQGWKL 65 (477)
T ss_dssp BCTTCCCCCSSCCEEEEESTHHHH
T ss_pred ccccccccCCCCCEEEEecCCccc
Confidence 489999999999999999999944
No 6
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=9.50 E-value=1.5e+02 Score=19.04 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhcc
Q psy17531 174 TLLFVSFTLAAIFARE 189 (255)
Q Consensus 174 a~iF~~lSl~a~~Tk~ 189 (255)
.++|+++++||+.-|+
T Consensus 28 La~Fi~lt~ya~~r~~ 43 (46)
T 1waz_A 28 LAIFIGLTIYAIQRKR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578899999987654
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=9.23 E-value=1.4e+03 Score=23.10 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy17531 134 RNRTGAFIGFTLCTGIGLGP 153 (255)
Q Consensus 134 ~~~l~lL~~ft~l~G~~Lg~ 153 (255)
+.|..-+.++..+.|+.+-.
T Consensus 389 ~ln~~sl~gl~~~iGi~vd~ 408 (1057)
T 4dx5_A 389 SINTLTMFGMVLAIGLLVDD 408 (1057)
T ss_dssp CBCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHeeccccc
Confidence 44556666677777776543
No 8
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=9.18 E-value=90 Score=29.12 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.4
Q ss_pred ccccCCCCCCCCCcccccccccccc
Q psy17531 12 TMAISSRGPSPIPVEQRLGIYWEEK 36 (255)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (255)
.||.-+|.++|+|..+..|-.|..+
T Consensus 33 SYGnEKRFfCPPP~VyL~G~gW~~~ 57 (422)
T 3iag_C 33 SYGNEKRFFCPPPCVYLMGSGWKKK 57 (422)
T ss_dssp BCTTCCCCCSSCCEEEEESTHHHHH
T ss_pred ccccccccCCCCCEEEEeCCCcccc
Confidence 5899999999999999999999654
No 9
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=8.00 E-value=4.7e+02 Score=16.73 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=9.8
Q ss_pred cHHHHHHHHHHHH
Q psy17531 69 DSSTKQHLQNVYG 81 (255)
Q Consensus 69 ~~~~~~fi~KVY~ 81 (255)
|-.||+|+.++-.
T Consensus 8 dm~RRqfln~l~~ 20 (49)
T 1q90_R 8 DMNKRNIMNLILA 20 (49)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 5789999987543
No 10
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=7.60 E-value=7.5e+02 Score=18.77 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17531 80 YGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCTGIGLGPLLEMAI 159 (255)
Q Consensus 80 Y~~La~~LliTa~~a~~~~~~~~~~~~~~~~v~~i~~l~~~~~l~~~~~~~r~~~~~l~lL~~ft~l~G~~Lg~i~~~~~ 159 (255)
|.++.++.++.+.+....=...-+...+..++..+...+..+.+...-++. .....++.+...+......+|.++.
T Consensus 4 ~l~Ll~ail~ev~~~~~lK~s~g~~~~~~~~l~i~~~~ls~~l~~~alk~i-~~s~ay~iw~~l~pv~~~l~g~l~l--- 79 (137)
T 2i68_A 4 YIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYI-PTGIAYAIWSGVGIVLISLLSWGFF--- 79 (137)
T ss_dssp CHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHHHHHHHHh---
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17531 160 VVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQ 191 (255)
Q Consensus 160 ~~~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rD 191 (255)
+...=..-.++.+.+..|.-+.....|+++
T Consensus 80 --gE~ls~~~~~Gi~LIi~GV~ll~~~~~~~~ 109 (137)
T 2i68_A 80 --GQRLDLPAIIGMMLICAGVLIINLLSRSTP 109 (137)
T ss_dssp --C------CHHHHHHHHHHHHHHHHC-----
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Done!