Query psy17531
Match_columns 255
No_of_seqs 199 out of 1112
Neff 6.4
Searched_HMMs 13730
Date Sat Aug 17 00:55:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17531.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17531hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3brda2 b.2.5.8 (A:197-380) DN 17.2 18 0.0013 28.2 0.8 25 12-36 32-56 (184)
2 d1iwga7 f.35.1.1 (A:7-37,A:331 14.2 2.3E+02 0.016 20.9 8.3 25 70-94 32-56 (199)
3 d2iuba2 f.17.3.1 (A:286-349) M 12.0 1.1E+02 0.0081 18.6 3.6 26 73-98 2-28 (64)
4 d1q90r_ f.23.12.1 (R:) ISP sub 8.9 1.7E+02 0.012 16.6 3.2 29 128-156 6-34 (39)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.7 5.8E+02 0.042 19.5 7.9 67 136-213 4-70 (248)
6 d1jb0l_ f.31.1.1 (L:) Photosys 4.8 5.7E+02 0.042 18.3 7.0 37 173-209 83-132 (151)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 4.0 3.2E+02 0.023 14.1 2.6 12 198-209 8-19 (30)
8 d1ppje2 f.23.12.1 (E:1-69) Iro 3.6 5.2E+02 0.038 16.0 3.8 9 78-86 33-41 (69)
9 d1rzhh2 f.23.10.1 (H:11-35) Ph 2.8 4.1E+02 0.03 13.3 3.1 6 231-236 17-22 (26)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 2.7 5E+02 0.036 14.1 2.4 12 199-210 17-28 (37)
No 1
>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=17.21 E-value=18 Score=28.19 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.1
Q ss_pred ccccCCCCCCCCCcccccccccccc
Q psy17531 12 TMAISSRGPSPIPVEQRLGIYWEEK 36 (255)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (255)
-||--+|.++|+|.....|-.|..+
T Consensus 32 SYG~EKRFfCPPP~vyL~G~~W~~~ 56 (184)
T d3brda2 32 SYGNEKRFFCPPPCIYLIGQGWKLK 56 (184)
T ss_dssp BCTTCCCCCSSCCEEEEESTHHHHH
T ss_pred cccccccccCCCCEEEEecCccCCc
Confidence 5899999999999999999999543
No 2
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.23 E-value=2.3e+02 Score=20.86 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17531 70 SSTKQHLQNVYGCLTLGMLAATAGA 94 (255)
Q Consensus 70 ~~~~~fi~KVY~~La~~LliTa~~a 94 (255)
+-.++-++++...+..++++..+..
T Consensus 32 ~fi~~si~~~~~~l~ia~~lv~~vl 56 (199)
T d1iwga7 32 PFVKISIHEVVKTLVEAIILVFLVM 56 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455557777777777777655443
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=11.97 E-value=1.1e+02 Score=18.60 Aligned_cols=26 Identities=4% Similarity=0.079 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy17531 73 KQHLQNVYGCLTLGMLA-ATAGAYLQL 98 (255)
Q Consensus 73 ~~fi~KVY~~La~~Lli-Ta~~a~~~~ 98 (255)
.+..-|+..+++.=.+. |.+.+..++
T Consensus 2 ~N~~mk~lT~it~iflP~t~i~gifGM 28 (64)
T d2iuba2 2 TNEVMKVLTIIATIFMPLTFIAGIYGM 28 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34455666666555443 333333344
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.94 E-value=1.7e+02 Score=16.63 Aligned_cols=29 Identities=10% Similarity=-0.335 Sum_probs=21.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy17531 128 NQINSNRNRTGAFIGFTLCTGIGLGPLLE 156 (255)
Q Consensus 128 ~~~r~~~~~l~lL~~ft~l~G~~Lg~i~~ 156 (255)
+-.|+.-.|+.+++.-+.-.+-++.|.+.
T Consensus 6 DMgrR~~MNLll~G~~~~~~~g~l~py~~ 34 (39)
T d1q90r_ 6 DMNKRNIMNLILAGGAGLPITTLALGYGA 34 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccchhhhhhccceeE
Confidence 33345678888888888888888888776
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.74 E-value=5.8e+02 Score=19.53 Aligned_cols=67 Identities=15% Similarity=0.046 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHH
Q psy17531 136 RTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLAN 213 (255)
Q Consensus 136 ~l~lL~~ft~l~G~~Lg~i~~~~~~~~~~~V~~A~~~Ta~iF~~lSl~a~~Tk~rDft~lgg~L~~gli~Liv~sl~n 213 (255)
++.++.++.++.++..-.+. ..++...|.+ .++...+..|-+.+|| ..=.+++.=|++.|+++-+.-
T Consensus 4 K~~ll~l~~a~~~~~~~~~~------~~~~~~~a~~--~~~~~~~~~~vy~s~r---~~p~kyi~PG~~~l~~Fvi~P 70 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMY------AQGEYLFAIT--TLILSSAGLYIFANRK---AYAWRYVYPGMAGMGLFVLFP 70 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHH------GGGCHHHHHH--HHHHHHHHHHHHSSSC---CTTHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HcchHHHHHH--HHHHHHheEEEEEccC---ccceehhhhHHHHHHHHHHHh
Confidence 56777788877777554432 2333333332 3344455567788875 233456777777776665543
No 6
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=4.80 E-value=5.7e+02 Score=18.34 Aligned_cols=37 Identities=3% Similarity=0.046 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhcccch-------------hhhhHHHHHHHHHHHHH
Q psy17531 173 TTLLFVSFTLAAIFAREGQW-------------IYIGGSLMTMLSTLITL 209 (255)
Q Consensus 173 Ta~iF~~lSl~a~~Tk~rDf-------------t~lgg~L~~gli~Liv~ 209 (255)
-.+..+|+++|+..+++++- .+-++++.-|+-+.+++
T Consensus 83 v~Ilt~~L~lYg~~sf~~~~~~~d~l~t~~gWs~F~~GF~~Gg~GGa~fA 132 (151)
T d1jb0l_ 83 ILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGAMGSAFVA 132 (151)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCCCCCcccccCcccHHHhhchhhhccccHHHHH
Confidence 34455677777776654321 23355666555554444
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.96 E-value=3.2e+02 Score=14.10 Aligned_cols=12 Identities=8% Similarity=0.215 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q psy17531 198 SLMTMLSTLITL 209 (255)
Q Consensus 198 ~L~~gli~Liv~ 209 (255)
+++.++++|+.+
T Consensus 8 ~ifac~i~lfff 19 (30)
T d2axtt1 8 FIFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445556655543
No 8
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.56 E-value=5.2e+02 Score=16.01 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy17531 78 NVYGCLTLG 86 (255)
Q Consensus 78 KVY~~La~~ 86 (255)
|+|.+|..+
T Consensus 33 k~fsYl~~g 41 (69)
T d1ppje2 33 KGFSYLVTA 41 (69)
T ss_dssp HHHHHHHHH
T ss_pred ceehhhhhh
Confidence 444444333
No 9
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.84 E-value=4.1e+02 Score=13.35 Aligned_cols=6 Identities=17% Similarity=-0.418 Sum_probs=2.1
Q ss_pred HHHHhH
Q psy17531 231 LGDDNK 236 (255)
Q Consensus 231 ~a~DtQ 236 (255)
+.|--|
T Consensus 17 li~ylq 22 (26)
T d1rzhh2 17 LIYYLQ 22 (26)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 333333
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.73 E-value=5e+02 Score=14.11 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q psy17531 199 LMTMLSTLITLS 210 (255)
Q Consensus 199 L~~gli~Liv~s 210 (255)
|.+|++.+++.+
T Consensus 17 Ly~GlLlifvl~ 28 (37)
T d2axtl1 17 LYLGLLLILVLA 28 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444544444443
Done!