RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17531
(255 letters)
>gnl|CDD|198412 cd10430, BI-1, BAX inhibitor (BI)-1. Mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins have been shown to have an antiapoptotic effect
either by stimulating the antiapoptotic function of
Bcl-2, a well-characterized oncogene, or by inhibiting
the proapoptotic effect of Bax, another member of the
Bcl-2 family. Their broad tissue distribution and high
degree of conservation suggests an important regulatory
role. In plants, BI-1 like proteins play a role in
pathogen resistance.
Length = 213
Score = 160 bits (406), Expect = 5e-49
Identities = 62/162 (38%), Positives = 97/162 (59%), Gaps = 5/162 (3%)
Query: 67 HSDSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMST 126
S +QHL+ VY L + +LAA GAY+ + + LL+ + + G +++ T
Sbjct: 3 QISPSVQQHLKKVYLTLAVALLAAAVGAYVHM-----VINIGGLLTGLLSLGLSLWLAFT 57
Query: 127 KNQINSNRNRTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIF 186
+ + R G +GF TG LGPLL++ I +NPSI+VTAF+ T ++F F+LAA+
Sbjct: 58 PSTGKNEPKRLGLLLGFAFLTGASLGPLLDLVIAINPSIIVTAFLGTAVIFACFSLAALL 117
Query: 187 AREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDRYLLV 228
A+ +++Y+GG L + LS L+ +SLAN+F GSK LF L +
Sbjct: 118 AKRREYLYLGGLLSSALSILLLVSLANIFGGSKFLFQAELYL 159
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 89.2 bits (222), Expect = 1e-21
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 73 KQHLQNVYGCLTLGMLAATAGAYL-----QLTQAMFQSTLVMLLSSVGAFGFLIYVMSTK 127
++ L+ VYG L LG+L A AYL L Q +F V LL + F+ + S
Sbjct: 1 RKFLRKVYGLLALGLLLTAAVAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRI 60
Query: 128 NQINSNRNRTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFA 187
+ +S+ FTL G+ LGP+L + SI++ AF+ T +F +L A+
Sbjct: 61 KKKSSSAAL-ALLFLFTLLEGLTLGPILLVYT--AGSIILQAFLGTAAIFGGLSLYALTT 117
Query: 188 REGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLF 222
+ ++GG L L LI SL N+F S L
Sbjct: 118 KR-DLSFLGGFLFAGLIGLIVASLVNIFLPSSALS 151
>gnl|CDD|198409 cd06181, BI-1-like, BAX inhibitor (BI)-1/YccA-like protein family.
Mammalian members of the BAX inhibitor (BI)-1 like
family of small transmembrane proteins have been shown
to have an antiapoptotic effect either by stimulating
the antiapoptotic function of Bcl-2, a
well-characterized oncogene, or by inhibiting the
proapoptotic effect of Bax, another member of the Bcl-2
family. Their broad tissue distribution and high degree
of conservation suggests an important regulatory role.
This superfamily also contains the lifeguard(LFG)-like
proteins and other subfamilies which appear to be
related by common descent and also function as
inhibitors of apoptosis. In plants, BI-1 like proteins
play a role in pathogen resistance. A prokaryotic
member, Escherichia coli YccA, has been shown to
interact with ATP-dependent protease FtsH, which
degrades abnormal membrane proteins as part of a quality
control mechanism to keep the integrity of biological
membranes.
Length = 202
Score = 68.2 bits (167), Expect = 6e-14
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 12/161 (7%)
Query: 71 STKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQ---STLVMLLSSVGAFGFLIYVMSTK 127
STK L+ VY L L +L A A L+ LL+S+ A ++ K
Sbjct: 1 STKDFLRKVYMILALQLLLTAATATAFTVCDPGWYWSPALMGLLTSMLALMATAAMIRAK 60
Query: 128 NQINSNRNRTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFA 187
+N GFT G +GPLL P+I++ A T L+F T+ A+ A
Sbjct: 61 MPVN-----LILLFGFTGLMGYVVGPLLFFY---GPTILLRALGGTALVFFGLTVYALQA 112
Query: 188 REGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDRYLLV 228
R+ ++++GG LM L L+ L N FF S L V
Sbjct: 113 RK-DFLFLGGPLMAGLGFLLLSFLLNTFFYSPWLHLVAAAV 152
>gnl|CDD|198414 cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor
(BI)-1/YccA-like proteins. This family is comprised of
bacterial relatives of the mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. In plants, BI-1 like
proteins play a role in pathogen resistance. A
characterized prokaryotic member, Escherichia coli YccA,
has been shown to interact with ATP-dependent protease
FtsH, which degrades abnormal membrane proteins as part
of a quality control mechanism to keep the integrity of
biological membranes.
Length = 211
Score = 63.7 bits (156), Expect = 3e-12
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 12/153 (7%)
Query: 74 QHLQNVYGCLTLGMLAATAGAYLQLTQA---MFQSTLVMLLSSVGAFGFLIYVMSTKNQI 130
++ VYG + G+L GAY+ + + + +M + + + + N++
Sbjct: 4 SFMKKVYGLMAAGLLLTAVGAYVGASTPALLLIAGSPLMWVLLIAELALVFGLSFRINKM 63
Query: 131 NSNRNRTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFARE- 189
+ F F TG+ L P+L + + AF T F +L ++
Sbjct: 64 SVATA-LPLFFAFAALTGLTLSPILLVYTGA---SIAQAFFTTAATFGGLSLYGYTTKKD 119
Query: 190 -GQWIYIGGSLMTMLSTLITLSLANLFFGSKLL 221
G L L LI SL N+F S L
Sbjct: 120 LSFL---GSFLFMGLIGLIIASLVNIFLQSSAL 149
>gnl|CDD|223742 COG0670, COG0670, Integral membrane protein, interacts with FtsH
[General function prediction only].
Length = 233
Score = 58.1 bits (141), Expect = 3e-10
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 6/158 (3%)
Query: 68 SDSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVM--- 124
SD L+ VY L LG+L GA L L + + +
Sbjct: 16 SDLGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLGLLSLSPPGFVLIIAGLAGVFFL 75
Query: 125 STKNQINSNRNRTGAFIGFTLCTGIGLGPLLEM-AIVVNPSIVVTAFMLTTLLFVSFTLA 183
S K +S F+ +T G+ L P+L + A + + AF +T L+F + +L
Sbjct: 76 SRKINKSSPTALILFFV-YTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLY 134
Query: 184 AIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLL 221
+ +G L L LI SL N+F GS L
Sbjct: 135 GYTTKRDLS-SLGSFLFMALIGLIIASLVNIFLGSSAL 171
>gnl|CDD|198415 cd10433, YccA_like, YccA-like proteins. A prokaryotic member of
the BAX inhibitor (BI)-1 like family of small
transmembrane proteins, Escherichia coli YccA, has been
shown to interact with ATP-dependent protease FtsH,
which degrades abnormal membrane proteins as part of a
quality control mechanism to keep the integrity of
biological membranes.
Length = 205
Score = 46.8 bits (112), Expect = 2e-06
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 71 STKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQI 130
ST + L+N Y L++ + + GA + + L++ L VGA+G L + T+
Sbjct: 2 STNKVLRNTYMLLSMTLAFSALGAGVSMAGGSPIMGLLLTL--VGAYGLLFLIEKTR--- 56
Query: 131 NSNRNRTGAFIGFTLCTGIGLGPLLEMAIVVN--PSIVVTAFMLTTLLFVSFTLAAIFAR 188
NS F FT G LGP+L M + + I++TA T +F + A+ +
Sbjct: 57 NSAWGIVLVF-AFTGFMGYTLGPILNMYLALPNGGQIIMTALGGTAAIFFGLSAYALTTK 115
Query: 189 EGQWIYIGGSLMTMLSTLITLSLANLFFGSKLL 221
+ + ++GG L L+ ++AN+F L
Sbjct: 116 K-DFSFLGGFLFVGAIVLLLAAVANIFLQIPAL 147
>gnl|CDD|198411 cd10429, GAAP_like, Golgi antiapoptotic protein. GAAP (or
transmembrane BAX inhibitor motif containing 4) is a
regulator of apoptosis that is related to the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. Human GAAP has been linked
to the modulation of intracellular fluxes of Ca(2+), by
suppressing influx from the extracellular medium and
reducing release from intracellular stores. A viral
homolog (vaccinia virus vGAAP) acts similar to its human
counterpart in inhibiting apoptosis.
Length = 233
Score = 37.6 bits (88), Expect = 0.003
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 20/150 (13%)
Query: 76 LQNVYGCLTLGMLAATAGAYLQLTQAMFQSTL-----VMLLSSVGAFGFLIYVMSTKNQI 130
L+ VY L++ +LA TA + L ++ + + L+S +G+ LI + ++
Sbjct: 31 LRKVYSILSVQLLATTAVSALFYLSPSIKTFVQSHPWLFLISLIGSLILLIALYWKRHSH 90
Query: 131 NSNRNRTGAFI---GFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFA 187
N I FTLC +G ++ + IV+ A +LT +FV T
Sbjct: 91 PVN------LILLSLFTLCEAYTVGLVVSF---YDGKIVLQALILTLGVFVGLTAYTFQT 141
Query: 188 -REGQWIYIGGSLMTMLSTLITLSLANLFF 216
R+ G L +L LI L+L FF
Sbjct: 142 KRDFS--SFGALLFILLWALILLALIFQFF 169
>gnl|CDD|211797 TIGR03212, uraD_N-term-dom, putative urate catabolism protein.
This model represents a protein that is predominantly
found just upstream of the UraD protein (OHCU
decarboxylase) and in a number of instances as a
N-terminal fusion with it. UraD itself catalyzes the
last step in the catabolism of urate to allantoate. The
function of this protein is presently unknown. It shows
homology with the pfam01522 polysaccharide deacetylase
domain family.
Length = 297
Score = 29.3 bits (66), Expect = 1.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 13/48 (27%)
Query: 47 YGAPPPSQ---GG----------YEEMCENCWLHSDSSTKQHLQNVYG 81
YG PP GG YEE ENC LH D++++ L + G
Sbjct: 8 YGRNPPDARWPGGARIAVQFVLNYEEGGENCVLHGDAASEAFLSEIVG 55
>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism].
Length = 451
Score = 29.2 bits (66), Expect = 2.6
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 136 RTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAI 185
G +G L IGL + + ++V +L +LF + I
Sbjct: 359 GVGLLLGLVLAIIIGLRVPAWLYGGLLLGLIVALALLLNILFAALVGVLI 408
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 28.8 bits (65), Expect = 3.1
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 140 FIGFTLCTGI-GLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFA-REGQWIYIGG 197
I F L I +GPLL+ A +LTTL ++F L A A R +
Sbjct: 19 LIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEER 78
Query: 198 SLMTMLSTLITLSLANLFFGSKLLF 222
SL L + L G LLF
Sbjct: 79 SLFLALLLIAAGILIRSLGGLPLLF 103
>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE;
Provisional.
Length = 257
Score = 28.2 bits (63), Expect = 3.9
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 144 TLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFARE 189
TL +G + LE AI PS+ AF LTT FT A FAR+
Sbjct: 109 TLYSGT-VAAALEGAIQGIPSL---AFSLTTYENADFTYAGKFARK 150
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 28.2 bits (63), Expect = 4.7
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 174 TLLFVSFTLAAIFAREGQ---WIYIGGSLMTMLSTLITLSLANLFFGSKLLFDRYLLVKN 230
T L VS +A A + YIGG+ T L I L F F+ Y+LV++
Sbjct: 95 TALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPI------LEFAEDENFEYYVLVRD 148
Query: 231 L 231
L
Sbjct: 149 L 149
>gnl|CDD|219169 pfam06772, LtrA, Bacterial low temperature requirement A protein
(LtrA). This family consists of several bacteria
specific low temperature requirement A (LtrA) protein
sequences which have been found to be essential for
growth at low temperatures in Listeria monocytogenes.
Length = 354
Score = 27.7 bits (62), Expect = 6.3
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 154 LLEMAIVVNPSIVV-TAFMLTTLLFVSFTLAAIFAREGQWIYIG-----GSLMTMLSTLI 207
L+ M V+ S + AF T LLF L R Q++ G T
Sbjct: 72 LVLMFGVLLLSASLPLAFENTGLLFAIAYLIMRVGRALQYLLAGRGLDPADRTTARRISS 131
Query: 208 TLSLANLF-FGSKLL--FDRYLL 227
L L++LF S LL RY L
Sbjct: 132 VLLLSSLFWLASGLLPGNARYAL 154
>gnl|CDD|225866 COG3329, COG3329, Predicted permease [General function prediction
only].
Length = 372
Score = 27.5 bits (61), Expect = 7.5
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 70 SSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFG 118
L LGML A + L++ +A++Q+ + LL ++G G
Sbjct: 10 DFVGNLLSPTLLFFILGMLIAAFKSDLEIPEAIYQALSLYLLLAIGFKG 58
>gnl|CDD|215143 PLN02255, PLN02255, H(+) -translocating inorganic pyrophosphatase.
Length = 765
Score = 27.5 bits (61), Expect = 7.7
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 164 SIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLIT 208
S+++ F + ++VSF+LAA++ I + + MLST+ T
Sbjct: 457 SVIIPIFAIAVSIYVSFSLAAMYG-------IAVAALGMLSTIAT 494
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.410
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,636,673
Number of extensions: 1187910
Number of successful extensions: 1424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1391
Number of HSP's successfully gapped: 138
Length of query: 255
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 160
Effective length of database: 6,723,972
Effective search space: 1075835520
Effective search space used: 1075835520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)