BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17537
(773 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 627 bits (1616), Expect = e-180, Method: Compositional matrix adjust.
Identities = 305/471 (64%), Positives = 361/471 (76%), Gaps = 49/471 (10%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
F CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+FM +S++
Sbjct: 79 FFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEV 138
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTN 373
DP+KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMNSLLQTL+FTN
Sbjct: 139 TDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTN 198
Query: 374 QLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDV 433
QLRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWETLDSFMQHDV
Sbjct: 199 QLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDV 258
Query: 434 QEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG 493
QE RVLLD +E KMKGTCVEGT+PKLF GKM+S+I+CK+V+Y S R E +YDIQL++KG
Sbjct: 259 QELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG 318
Query: 494 KKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTD 553
KK+I ESF DY+ E L+GDNKYDAG HGLQ+AEKGV F LPPVLHL LMRF YDP TD
Sbjct: 319 KKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTD 378
Query: 554 CSVKFNDRFEFYDRIELDDFLKEKGPT-PATYILHAVLVHSGDNHGGHYVVYINPKGDNK 612
++K NDRFEF +++ LD+FL++ P PA YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 379 QNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGK 438
Query: 613 STALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSK 672
WCKFDDDVVS+C+K
Sbjct: 439 ----------------------------------------------WCKFDDDVVSRCTK 452
Query: 673 DEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQE 723
+EA+ HN+GG+D+D L+V+H TNAYMLVYIRES+L+ VL+ VT+ DIPQ+
Sbjct: 453 EEAIEHNYGGHDDD--LSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQ 501
Score = 295 bits (754), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 168/256 (65%), Gaps = 43/256 (16%)
Query: 45 ATATNQDVEMNDADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL 104
A + + D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 9 ALSDGHNTAEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFY 68
Query: 105 -------------------------------------------VRRRIQHLFFIKENDWG 121
RRI HLFF KENDWG
Sbjct: 69 PDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWG 128
Query: 122 FSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMN 181
FS+FM +S++ DP+KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMN
Sbjct: 129 FSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMN 188
Query: 182 SLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWE 241
SLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWE
Sbjct: 189 SLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWE 248
Query: 242 TLDSFMQHDVQEFLRV 257
TLDSFMQHDVQE RV
Sbjct: 249 TLDSFMQHDVQELCRV 264
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 511 bits (1315), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/380 (66%), Positives = 292/380 (76%), Gaps = 49/380 (12%)
Query: 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 404
KKHTGYVGLKNQGATCYMNSLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+EL
Sbjct: 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYEL 60
Query: 405 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGK 464
Q SDKPVGTKKLTKSFGWETLDSFMQHDVQE RVLLD +E KMKGTCVEGT+PKLF GK
Sbjct: 61 QHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGK 120
Query: 465 MISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQ 524
M+S+I+CK+V+Y S R E +YDIQL++KGKK+I ESF DY+ E L+GDNKYDAG HGLQ
Sbjct: 121 MVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQ 180
Query: 525 DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPT-PAT 583
+AEKGV F LPPVLHL LMRF YDP TD ++K NDRFEF +++ LD+FL++ P PA
Sbjct: 181 EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN 240
Query: 584 YILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 241 YILHAVLVHSGDNHGGHYVVYLNPKGDGK------------------------------- 269
Query: 644 HAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703
WCKFDDDVVS+C+K+EA+ HN+GG+D+D L+V+H TNAYMLVYI
Sbjct: 270 ---------------WCKFDDDVVSRCTKEEAIEHNYGGHDDD--LSVRHCTNAYMLVYI 312
Query: 704 RESELANVLEDVTERDIPQE 723
RES+L+ VL+ VT+ DIPQ+
Sbjct: 313 RESKLSEVLQAVTDHDIPQQ 332
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/95 (90%), Positives = 89/95 (93%)
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 222
KKHTGYVGLKNQGATCYMNSLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+EL
Sbjct: 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYEL 60
Query: 223 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
Q SDKPVGTKKLTKSFGWETLDSFMQHDVQE RV
Sbjct: 61 QHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRV 95
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/380 (64%), Positives = 285/380 (75%), Gaps = 49/380 (12%)
Query: 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 404
KKHTGYVGLKNQGATCY NSLLQTL+FTNQLRKAVY PTE DDS+KSV LALQRVF+EL
Sbjct: 1 KKHTGYVGLKNQGATCYXNSLLQTLFFTNQLRKAVYXXPTEGDDSSKSVPLALQRVFYEL 60
Query: 405 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGK 464
Q SDKPVGTKKLTKSFGWETLDSF QHDVQE RVLLD +E K KGTCVEGT+PKLF GK
Sbjct: 61 QHSDKPVGTKKLTKSFGWETLDSFXQHDVQELCRVLLDNVENKXKGTCVEGTIPKLFRGK 120
Query: 465 MISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQ 524
+S+I+CK+V+Y S R E +YDIQL++KGKK+I ESF DY+ E L+GDNKYDAG HGLQ
Sbjct: 121 XVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQ 180
Query: 525 DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPT-PAT 583
+AEKGV F LPPVLHL L RF YDP TD ++K NDRFEF +++ LD+FL++ P PA
Sbjct: 181 EAEKGVKFLTLPPVLHLQLXRFXYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN 240
Query: 584 YILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 241 YILHAVLVHSGDNHGGHYVVYLNPKGDGK------------------------------- 269
Query: 644 HAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703
WCKFDDDVVS+C+K+EA+ HN+GG+D+D L+V+H TNAY LVYI
Sbjct: 270 ---------------WCKFDDDVVSRCTKEEAIEHNYGGHDDD--LSVRHCTNAYXLVYI 312
Query: 704 RESELANVLEDVTERDIPQE 723
RES+L+ VL+ VT+ DIPQ+
Sbjct: 313 RESKLSEVLQAVTDHDIPQQ 332
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/95 (87%), Positives = 86/95 (90%)
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 222
KKHTGYVGLKNQGATCY NSLLQTL+FTNQLRKAVY PTE DDS+KSV LALQRVF+EL
Sbjct: 1 KKHTGYVGLKNQGATCYXNSLLQTLFFTNQLRKAVYXXPTEGDDSSKSVPLALQRVFYEL 60
Query: 223 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
Q SDKPVGTKKLTKSFGWETLDSF QHDVQE RV
Sbjct: 61 QHSDKPVGTKKLTKSFGWETLDSFXQHDVQELCRV 95
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 68/90 (75%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
F CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+FM +S++
Sbjct: 69 FFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEV 128
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVSWD 343
DP+KGFI DD + EV VQADAPHGV+WD
Sbjct: 129 TDPEKGFIDDDKVTFEVFVQADAPHGVAWD 158
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 75/149 (50%), Gaps = 43/149 (28%)
Query: 56 DADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL----------- 104
D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 10 DMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 69
Query: 105 --------------------------------VRRRIQHLFFIKENDWGFSHFMTFSDLL 132
RRI HLFF KENDWGFS+FM +S++
Sbjct: 70 FLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVT 129
Query: 133 DPDKGFIKDDSIILEVCVQADAPHGVSWD 161
DP+KGFI DD + EV VQADAPHGV+WD
Sbjct: 130 DPEKGFIDDDKVTFEVFVQADAPHGVAWD 158
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 67/89 (75%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
F CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+FM +S++
Sbjct: 67 FFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEV 126
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVSW 342
DP+KGFI DD + EV VQADAPHGV+W
Sbjct: 127 TDPEKGFIDDDKVTFEVFVQADAPHGVAW 155
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 74/148 (50%), Gaps = 43/148 (29%)
Query: 56 DADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL----------- 104
D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 8 DMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 67
Query: 105 --------------------------------VRRRIQHLFFIKENDWGFSHFMTFSDLL 132
RRI HLFF KENDWGFS+FM +S++
Sbjct: 68 FLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVT 127
Query: 133 DPDKGFIKDDSIILEVCVQADAPHGVSW 160
DP+KGFI DD + EV VQADAPHGV+W
Sbjct: 128 DPEKGFIDDDKVTFEVFVQADAPHGVAW 155
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Query: 248 QHDVQEFLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHF 307
Q V FL+ CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+F
Sbjct: 50 QKSVGFFLQ-CNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNF 108
Query: 308 MTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSW 342
M +S++ DP+KGFI DD + EV VQADAPHGV+W
Sbjct: 109 MAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW 143
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 70/140 (50%), Gaps = 43/140 (30%)
Query: 64 RSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL------------------- 104
RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 4 RSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAES 63
Query: 105 ------------------------VRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIK 140
RRI HLFF KENDWGFS+FM +S++ DP+KGFI
Sbjct: 64 DSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFID 123
Query: 141 DDSIILEVCVQADAPHGVSW 160
DD + EV VQADAPHGV+W
Sbjct: 124 DDKVTFEVFVQADAPHGVAW 143
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 68/97 (70%), Gaps = 4/97 (4%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
F CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+FM +S++
Sbjct: 69 FFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEV 128
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGY 350
DP+KGFI DD + EV VQADAP G S+ H+ +
Sbjct: 129 TDPEKGFIDDDKVTFEVFVQADAPGG----SRAHSSH 161
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 75/156 (48%), Gaps = 47/156 (30%)
Query: 56 DADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL----------- 104
D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 10 DMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 69
Query: 105 --------------------------------VRRRIQHLFFIKENDWGFSHFMTFSDLL 132
RRI HLFF KENDWGFS+FM +S++
Sbjct: 70 FLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVT 129
Query: 133 DPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGY 168
DP+KGFI DD + EV VQADAP G S+ H+ +
Sbjct: 130 DPEKGFIDDDKVTFEVFVQADAPGG----SRAHSSH 161
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 63/88 (71%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
F CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+FM +S++
Sbjct: 69 FFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEV 128
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVS 341
DP+KGFI DD + EV VQAD GVS
Sbjct: 129 TDPEKGFIDDDKVTFEVFVQADLDAGVS 156
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 70/147 (47%), Gaps = 43/147 (29%)
Query: 56 DADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL----------- 104
D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 10 DMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 69
Query: 105 --------------------------------VRRRIQHLFFIKENDWGFSHFMTFSDLL 132
RRI HLFF KENDWGFS+FM +S++
Sbjct: 70 FLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVT 129
Query: 133 DPDKGFIKDDSIILEVCVQADAPHGVS 159
DP+KGFI DD + EV VQAD GVS
Sbjct: 130 DPEKGFIDDDKVTFEVFVQADLDAGVS 156
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 154/368 (41%), Gaps = 55/368 (14%)
Query: 288 SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL----EVCVQADAPHGVSWD 343
S++I H+F I N+ F + + D + +D+I+ +VC + P
Sbjct: 78 SKQIGHIFGINSNNGLLFCFKCEDYIGNID---LINDAILAKYWDDVCTKTMVP-----S 129
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQR 399
++ G GL N G+TC+M+S+LQ L YF ++ + +K + AL +
Sbjct: 130 MERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDK 189
Query: 400 VFHEL-------QFSDKPVGTKKLTK-----SFGW---ETLDSFMQHDVQEFLRVLLDKL 444
+ HEL Q S T + T + W + L + Q D EF + +++++
Sbjct: 190 IVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQI 249
Query: 445 E-------------IKMKGTCVEGTVPKLFEGKMISFIKCKKV-NYTSSRAETFYDIQLN 490
+ E V +FEG + S I C N + + + F D+ L+
Sbjct: 250 HQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLD 309
Query: 491 VKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDP 550
+K KK + E + + E L+ N + + QDA K + LP VL L L RF++
Sbjct: 310 IKDKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEH-L 368
Query: 551 VTDCSVKFNDRFEFYDRIELDDFL--------KEKGPTP-ATYILHAVLVHSGDNHGGHY 601
+ + K +D EF + + ++ E G P Y L ++ H G + GHY
Sbjct: 369 LNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHY 428
Query: 602 VVYINPKG 609
+ + G
Sbjct: 429 IAFCKISG 436
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL----EVCVQADAPHGVSWDS 162
++I H+F I N+ F + + D + +D+I+ +VC + P
Sbjct: 79 KQIGHIFGINSNNGLLFCFKCEDYIGNID---LINDAILAKYWDDVCTKTMVP-----SM 130
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQRV 218
++ G GL N G+TC+M+S+LQ L YF ++ + +K + AL ++
Sbjct: 131 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKI 190
Query: 219 FHEL-------QFSDKPVGTKKLTK-----SFGW---ETLDSFMQHDVQEF 254
HEL Q S T + T + W + L + Q D EF
Sbjct: 191 VHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEF 241
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 154/368 (41%), Gaps = 55/368 (14%)
Query: 288 SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL----EVCVQADAPHGVSWD 343
S++I H+F I N+ F + + D + +D+I+ +VC + P
Sbjct: 83 SKQIGHIFGINSNNGLLFCFKCEDYIGNID---LINDAILAKYWDDVCTKTMVP-----S 134
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQR 399
++ G GL N G+TC+M+S+LQ L YF ++ + +K + AL +
Sbjct: 135 MERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDK 194
Query: 400 VFHEL-------QFSDKPVGTKKLTK-----SFGW---ETLDSFMQHDVQEFLRVLLDKL 444
+ HEL Q S T + T + W + L + Q D EF + +++++
Sbjct: 195 IVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQI 254
Query: 445 E-------------IKMKGTCVEGTVPKLFEGKMISFIKCKKV-NYTSSRAETFYDIQLN 490
+ E V +FEG + S I C N + + + F D+ L+
Sbjct: 255 HQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLD 314
Query: 491 VKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDP 550
+K KK + E + + E L+ N + + QDA K + LP VL L L RF++
Sbjct: 315 IKDKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEH-L 373
Query: 551 VTDCSVKFNDRFEFYDRIELDDFL--------KEKGPTP-ATYILHAVLVHSGDNHGGHY 601
+ + K +D EF + + ++ E G P Y L ++ H G + GHY
Sbjct: 374 LNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHY 433
Query: 602 VVYINPKG 609
+ + G
Sbjct: 434 IAFCKISG 441
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL----EVCVQADAPHGVSWDS 162
++I H+F I N+ F + + D + +D+I+ +VC + P
Sbjct: 84 KQIGHIFGINSNNGLLFCFKCEDYIGNID---LINDAILAKYWDDVCTKTMVP-----SM 135
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQRV 218
++ G GL N G+TC+M+S+LQ L YF ++ + +K + AL ++
Sbjct: 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKI 195
Query: 219 FHEL-------QFSDKPVGTKKLTK-----SFGW---ETLDSFMQHDVQEF 254
HEL Q S T + T + W + L + Q D EF
Sbjct: 196 VHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEF 246
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 55/368 (14%)
Query: 288 SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL----EVCVQADAPHGVSWD 343
S++I H+F I N+ F + + D + +D+I+ +VC + P
Sbjct: 83 SKQIGHIFGINSNNGLLFCFKCEDYIGNID---LINDAILAKYWDDVCTKTMVP-----S 134
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQR 399
++ G GL N G TC+M+S+LQ L YF ++ + +K + AL +
Sbjct: 135 MERRDGLSGLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDK 194
Query: 400 VFHEL-------QFSDKPVGTKKLTK-----SFGW---ETLDSFMQHDVQEFLRVLLDKL 444
+ HEL Q S T + T + W + L + Q D EF + +++++
Sbjct: 195 IVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQI 254
Query: 445 E-------------IKMKGTCVEGTVPKLFEGKMISFIKCKKV-NYTSSRAETFYDIQLN 490
+ E V +FEG + S I C N + + + F D+ L+
Sbjct: 255 HQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLD 314
Query: 491 VKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDP 550
+K KK + E + + E L+ N + + QDA K + LP VL L L RF++
Sbjct: 315 IKDKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEH-L 373
Query: 551 VTDCSVKFNDRFEFYDRIELDDFL--------KEKGPTP-ATYILHAVLVHSGDNHGGHY 601
+ + K +D EF + + ++ E G P Y L ++ H G + GHY
Sbjct: 374 LNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHY 433
Query: 602 VVYINPKG 609
+ + G
Sbjct: 434 IAFCKISG 441
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 31/171 (18%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL----EVCVQADAPHGVSWDS 162
++I H+F I N+ F + + D + +D+I+ +VC + P
Sbjct: 84 KQIGHIFGINSNNGLLFCFKCEDYIGNID---LINDAILAKYWDDVCTKTMVP-----SM 135
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQRV 218
++ G GL N G TC+M+S+LQ L YF ++ + +K + AL ++
Sbjct: 136 ERRDGLSGLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKI 195
Query: 219 FHEL-------QFSDKPVGTKKLTK-----SFGW---ETLDSFMQHDVQEF 254
HEL Q S T + T + W + L + Q D EF
Sbjct: 196 VHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEF 246
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 136/353 (38%), Gaps = 58/353 (16%)
Query: 336 APHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD---DSNKS 392
P G S +SK G GL+N G TC+MNS+LQ L T +LR + D SN
Sbjct: 15 VPRG-SMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAH 73
Query: 393 VALA--LQRVFHELQFSD-----KPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLE 445
AL ++ + S P K + + + Q D QEFLR LLD L
Sbjct: 74 TALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYA-PRFVGYNQQDAQEFLRFLLDGLH 132
Query: 446 IKMKGTCV-----------------------------EGTVPKLFEGKMISFIKCKKVNY 476
++ + + + LF G++ S + C Y
Sbjct: 133 NEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGY 192
Query: 477 TSSRAETFYDIQLNVKGKK----DILESFKDYIEPEVLEGDNKYDAGVHGLQDAE-KGVT 531
S+ + F+D+ L + + +++ + + + +VL+GD K + K +
Sbjct: 193 CSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFS 252
Query: 532 FENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLV 591
+ P +L LHL RF + + F D ++L +F E A Y L+AV
Sbjct: 253 IQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRD-LDLREFASEN-TNHAVYNLYAVSN 310
Query: 592 HSGDNHGGHYVVYINPKGD------NKSTALPPFDKDAEV----LFFFKLYEP 634
HSG GGHY Y G N S+ P L F++L P
Sbjct: 311 HSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP 363
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 154 APHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLR 194
P G S +SK G GL+N G TC+MNS+LQ L T +LR
Sbjct: 15 VPRG-SMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELR 54
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 136/354 (38%), Gaps = 57/354 (16%)
Query: 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD---DSNKSVALA--L 397
+SK G GL+N G TC+MNS+LQ L T +LR + D SN AL
Sbjct: 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEF 61
Query: 398 QRVFHELQFSD-----KPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTC 452
++ + S P K + + + Q D QEFLR LLD L ++
Sbjct: 62 AKLIQTIWTSSPNDVVSPSEFKTQIQRYA-PRFVGYNQQDAQEFLRFLLDGLHNEVNRVT 120
Query: 453 V-----------------------------EGTVPKLFEGKMISFIKCKKVNYTSSRAET 483
+ + + LF G++ S + C Y S+ +
Sbjct: 121 LRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDP 180
Query: 484 FYDIQLNVKGKK----DILESFKDYIEPEVLEGDNKYDAGVHGLQDAE-KGVTFENLPPV 538
F+D+ L + + +++ + + + +VL+GD K + K + + P +
Sbjct: 181 FWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKI 240
Query: 539 LHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHG 598
L LHL RF + + F D ++L +F E A Y L+AV HSG G
Sbjct: 241 LVLHLKRFSESRIRTSKLTTFVNFPLRD-LDLREFASENT-NHAVYNLYAVSNHSGTTMG 298
Query: 599 GHYVVYINPKGD------NKSTALPPFDKDAEV----LFFFKLYEPRRKQISYL 642
GHY Y G N S+ P L F++L P + + L
Sbjct: 299 GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPSRMAAAL 352
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLR 194
+SK G GL+N G TC+MNS+LQ L T +LR
Sbjct: 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELR 35
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 146/365 (40%), Gaps = 86/365 (23%)
Query: 348 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQF- 406
+G+VGL+N G TC++N++LQ L T LR + + A L F ++
Sbjct: 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGA 60
Query: 407 -----SDKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKL--EIKMKG-----TC 452
S + V + F + + Q D QEFL++L+++L EI +G
Sbjct: 61 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPIL 120
Query: 453 VEGTVPK-------------------------------------LFEGKMISFIKCKKVN 475
G VP LF G++ S +KC+
Sbjct: 121 ANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACG 180
Query: 476 YTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDNK--YDAGVHGLQDAE 527
Y S+ E F D+ L + GK + + F + + E LE +N D + +
Sbjct: 181 YRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240
Query: 528 KGVTFENLPPVLHLHLMRFQYD--PVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYI 585
K +T + P +L LHL RF + SV + + R+ L DF +K +P Y
Sbjct: 241 K-LTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQ---RLSLGDFASDKAGSP-VYQ 295
Query: 586 LHAVLVHSGDNHGGHYV----------VY----INPKGDNKSTALPPFDKDAEVLFFFKL 631
L+A+ HSG H GHY VY ++P +N+ + + VLF+ +
Sbjct: 296 LYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVAS-----SEGYVLFYQLM 350
Query: 632 YEPRR 636
EP R
Sbjct: 351 QEPPR 355
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQF- 224
+G+VGL+N G TC++N++LQ L T LR + + A L F ++
Sbjct: 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGA 60
Query: 225 -----SDKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRV 257
S + V + F + + Q D QEFL++
Sbjct: 61 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKL 100
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 146/365 (40%), Gaps = 86/365 (23%)
Query: 348 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQF- 406
+G+VGL+N G TC++N++LQ L T LR + + A L F ++
Sbjct: 14 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGA 73
Query: 407 -----SDKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKL--EIKMKG-----TC 452
S + V + F + + Q D QEFL++L+++L EI +G
Sbjct: 74 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPIL 133
Query: 453 VEGTVPK-------------------------------------LFEGKMISFIKCKKVN 475
G VP LF G++ S +KC+
Sbjct: 134 ANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACG 193
Query: 476 YTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDNK--YDAGVHGLQDAE 527
Y S+ E F D+ L + GK + + F + + E LE +N D + +
Sbjct: 194 YRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 253
Query: 528 KGVTFENLPPVLHLHLMRFQYD--PVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYI 585
K +T + P +L LHL RF + SV + + R+ L DF +K +P Y
Sbjct: 254 K-LTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQ---RLSLGDFASDKAGSP-VYQ 308
Query: 586 LHAVLVHSGDNHGGHYV----------VY----INPKGDNKSTALPPFDKDAEVLFFFKL 631
L+A+ HSG H GHY VY ++P +N+ + + VLF+ +
Sbjct: 309 LYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVAS-----SEGYVLFYQLM 363
Query: 632 YEPRR 636
EP R
Sbjct: 364 QEPPR 368
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQF- 224
+G+VGL+N G TC++N++LQ L T LR + + A L F ++
Sbjct: 14 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGA 73
Query: 225 -----SDKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRV 257
S + V + F + + Q D QEFL++
Sbjct: 74 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKL 113
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 146/366 (39%), Gaps = 86/366 (23%)
Query: 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 404
+ +G+VGL+N G TC++N++LQ L T LR + + A L F ++
Sbjct: 17 RGSSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADV 76
Query: 405 QF------SDKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKL--EIKMKG---- 450
S + V + F + + Q D QEFL++L+++L EI +G
Sbjct: 77 IGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAP 136
Query: 451 -TCVEGTVPK-------------------------------------LFEGKMISFIKCK 472
G VP LF G++ S +KC+
Sbjct: 137 PILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQ 196
Query: 473 KVNYTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDNK--YDAGVHGLQ 524
Y S+ E F D+ L + GK + + F + + E LE +N D +
Sbjct: 197 ACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTR 256
Query: 525 DAEKGVTFENLPPVLHLHLMRFQYD--PVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPA 582
+K +T + P +L LHL RF + SV + + R+ L DF +K +P
Sbjct: 257 STKK-LTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQ---RLSLGDFASDKAGSP- 311
Query: 583 TYILHAVLVHSGDNHGGHYV----------VY----INPKGDNKSTALPPFDKDAEVLFF 628
Y L+A+ HSG H GHY VY ++P +N+ + + VLF+
Sbjct: 312 VYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVAS-----SEGYVLFY 366
Query: 629 FKLYEP 634
+ EP
Sbjct: 367 QLMQEP 372
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 222
+ +G+VGL+N G TC++N++LQ L T LR + + A L F ++
Sbjct: 17 RGSSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADV 76
Query: 223 QF------SDKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRV 257
S + V + F + + Q D QEFL++
Sbjct: 77 IGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKL 119
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 136/355 (38%), Gaps = 57/355 (16%)
Query: 334 ADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD---DSN 390
+ +P +SK G GL+N G TC+MNS+LQ L T +LR + D SN
Sbjct: 19 SSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSN 78
Query: 391 KSVALA--LQRVFHELQFSD-----KPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDK 443
AL ++ + S P K + + + + Q D QEFLR LLD
Sbjct: 79 AHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFV-GYNQQDAQEFLRFLLDG 137
Query: 444 LEIKMKGTCV-----------------------------EGTVPKLFEGKMISFIKCKKV 474
L ++ + + + LF G++ S + C
Sbjct: 138 LHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDC 197
Query: 475 NYTSSRAETFYDIQLNVKGKK----DILESFKDYIEPEVLEGDNKYDAGVHGLQDAE-KG 529
Y S+ + F+D+ L + + +++ + + + +VL+GD + K
Sbjct: 198 GYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDAAPTCCRCRGRKRCIKK 257
Query: 530 VTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAV 589
+ + P +L LHL RF + + F D ++L +F E A Y L+AV
Sbjct: 258 FSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRD-LDLREFASEN-TNHAVYNLYAV 315
Query: 590 LVHSGDNHGGHYVVYINPKGD------NKSTALPPFDKDAEV----LFFFKLYEP 634
HSG GGHY Y G N S+ P L F++L P
Sbjct: 316 SNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP 370
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 152 ADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLR 194
+ +P +SK G GL+N G TC+MNS+LQ L T +LR
Sbjct: 19 SSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELR 61
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 132/346 (38%), Gaps = 57/346 (16%)
Query: 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD---DSNKSVALA--L 397
+SK G GL+N G T +MNS+LQ L T +LR + D SN AL
Sbjct: 2 NSKSAQGLAGLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEF 61
Query: 398 QRVFHELQFSD-----KPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTC 452
++ + S P K + + + Q D QEFLR LLD L ++
Sbjct: 62 AKLIQTIWTSSPNDVVSPSEFKTQIQRYA-PRFVGYNQQDAQEFLRFLLDGLHNEVNRVT 120
Query: 453 V-----------------------------EGTVPKLFEGKMISFIKCKKVNYTSSRAET 483
+ + + LF G++ S + C Y S+ +
Sbjct: 121 LRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDP 180
Query: 484 FYDIQLNVKGKK----DILESFKDYIEPEVLEGDNKYDAGVHGLQDAE-KGVTFENLPPV 538
F+D+ L + + +++ + + + +VL+GD K + K + + P +
Sbjct: 181 FWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKI 240
Query: 539 LHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHG 598
L LHL RF + + F D ++L +F E A Y L+AV HSG G
Sbjct: 241 LVLHLKRFSESRIRTSKLTTFVNFPLRD-LDLREFASENT-NHAVYNLYAVSNHSGTTMG 298
Query: 599 GHYVVYINPKGD------NKSTALPPFDKDAEV----LFFFKLYEP 634
GHY Y G N S+ P L F++L P
Sbjct: 299 GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP 344
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLR 194
+SK G GL+N G T +MNS+LQ L T +LR
Sbjct: 2 NSKSAQGLAGLRNLGNTXFMNSILQCLSNTRELR 35
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 116/302 (38%), Gaps = 53/302 (17%)
Query: 351 VGLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQ-RVFHELQ 405
GL+N G TCYMNS+LQ L + + + Y+ DD N+S L + V E
Sbjct: 63 TGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQ-----DDINRSNLLGHKGEVAEEFG 117
Query: 406 FSDKPVGTK----------KLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGT---- 451
K + T K+T + + Q D QE L L+D L +
Sbjct: 118 IIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRK 177
Query: 452 -------------------------CVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYD 486
E + LF+G+ S ++C + S E F
Sbjct: 178 RYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMY 237
Query: 487 IQLNVKG--KKDILESFKDYIEPEVLEGDNK-YDAGVHGLQDAEKGVTFENLPPVLHLHL 543
+ L + K + + + + + E L +N+ Y + +D+ K + LPPVL +HL
Sbjct: 238 LSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHL 297
Query: 544 MRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVV 603
RF YD ++ + F + ++L ++ Y L +V H G GGHY
Sbjct: 298 KRFSYDGRWKQKLQTSVDFPL-ENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTA 356
Query: 604 YI 605
Y
Sbjct: 357 YC 358
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 169 VGLKNQGATCYMNSLLQTL 187
GL+N G TCYMNS+LQ L
Sbjct: 63 TGLRNLGNTCYMNSILQCL 81
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 111/298 (37%), Gaps = 45/298 (15%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQ-RVFHELQFSDK 409
GL+N G TCY NS+LQ L L + DD N+S L + V E K
Sbjct: 63 TGLRNLGNTCYXNSILQCLCNAPHLAD-YFNRNCYQDDINRSNLLGHKGEVAEEFGIIXK 121
Query: 410 PVGTK----------KLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGT-------- 451
+ T K+T + + Q D QE L L D L +
Sbjct: 122 ALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLXDGLHEDLNKADNRKRYKE 181
Query: 452 ---------------------CVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLN 490
E + LF+G+ S ++C + S E F + L
Sbjct: 182 ENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFXYLSLP 241
Query: 491 VKG--KKDILESFKDYIEPEVLEGDNK-YDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQ 547
+ K + + + + + E L +N+ Y + +D+ K + LPPVL +HL RF
Sbjct: 242 LASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFS 301
Query: 548 YDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYI 605
YD ++ + F + ++L ++ Y L +V H G GGHY Y
Sbjct: 302 YDGRWKQKLQTSVDFPL-ENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 358
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 169 VGLKNQGATCYMNSLLQTL 187
GL+N G TCY NS+LQ L
Sbjct: 63 TGLRNLGNTCYXNSILQCL 81
>pdb|2YLM|A Chain A, Mechanism Of Usp7 (Hausp) Activation By Its C-Terminal
Ubiquitin-Like Domain (Hubl) And Allosteric Regulation
By Gmp-Synthetase
Length = 530
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 605 INPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHP 658
++P+ LP FDKD +V+ F K+Y+P+ + ++Y GH Y ++ I + P
Sbjct: 111 VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLP 164
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 113/324 (34%), Gaps = 62/324 (19%)
Query: 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD---DSNKSVALALQRVFHEL- 404
G GL N G T +MNS LQ L T L K E++ D+ + + + EL
Sbjct: 7 GLCGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 66
Query: 405 ----QFSDKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKL-------------E 445
D V + G + Q D QE L LLD L E
Sbjct: 67 KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLE 126
Query: 446 IKMKGTCVEGTVPK----------------LFEGKMISFIKCKKVNYTSSRAETFYDIQL 489
+K + V K F G S + C + S + F + L
Sbjct: 127 LKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 186
Query: 490 NVKGKKD-ILE--------------SFKDYIE----PEVL-EGDNKYDAGVHGLQDAEKG 529
+ KKD ++E + +D IE E L E D Y Q A K
Sbjct: 187 PLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKK 246
Query: 530 VTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDR-IELDDFLKEKGPTPATYILHA 588
+LP +L +HL RF Y+ K + EF R + + +F+ P Y L A
Sbjct: 247 FDLWSLPKILVVHLKRFSYNRYW--RDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIA 304
Query: 589 VLVHSGDNHGGHYVVYINPKGDNK 612
V H G GHY Y K + K
Sbjct: 305 VSNHYGAMGVGHYTAYAKNKLNGK 328
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 169 VGLKNQGATCYMNSLLQTLYFTNQLR---------KAVYKMPTESDDSNKSVALALQRVF 219
VG KN G TCY+N+ LQ LY N LR + V + ++ +K + + +R F
Sbjct: 25 VGFKNXGNTCYLNATLQALYRVNDLRDXILNYNPSQGVSNSGAQDEEIHKQIVIEXKRCF 84
Query: 220 HELQ 223
LQ
Sbjct: 85 ENLQ 88
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLR---------KAVYKMPTESDDSNKSVALALQRVF 401
VG KN G TCY+N+ LQ LY N LR + V + ++ +K + + +R F
Sbjct: 25 VGFKNXGNTCYLNATLQALYRVNDLRDXILNYNPSQGVSNSGAQDEEIHKQIVIEXKRCF 84
Query: 402 HELQ 405
LQ
Sbjct: 85 ENLQ 88
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 34/160 (21%)
Query: 349 GYVGLKNQGATCYMNSLLQTLY--------FTNQLRKAVYKMPTESDDSNKSVALALQRV 400
GY G++N G +CY+NS++Q L+ + ++L K PT D + + + ++
Sbjct: 343 GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPT---DPTQDFSTQVAKL 399
Query: 401 FHELQFSD--KPVG------------------TKKLTKSF---GWETLDSFMQHDVQEFL 437
H L + KPV ++ K+ G + Q D QEF
Sbjct: 400 GHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFF 459
Query: 438 RVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYT 477
L++ +E + + V + + I + +KV YT
Sbjct: 460 LHLINMVERNCRSSENPNEVFRFLVEEKIKCLATEKVKYT 499
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 167 GYVGLKNQGATCYMNSLLQTLY--------FTNQLRKAVYKMPTESDDSNKSVALALQRV 218
GY G++N G +CY+NS++Q L+ + ++L K PT D + + + ++
Sbjct: 343 GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPT---DPTQDFSTQVAKL 399
Query: 219 FHEL 222
H L
Sbjct: 400 GHGL 403
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 495 KDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPV-------LHLHLMRFQ 547
K I + D EP ++ D + AGV L D GVT +++P + ++ HL
Sbjct: 230 KKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAV 289
Query: 548 YDPVTDCSVKFNDRFEFY--DRIELDDFLKE 576
D V+ + +R+ Y D L D ++E
Sbjct: 290 ADAVSGMLSELQERYRTYREDEALLQDVMRE 320
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 114 FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL--EVCVQADA 154
F++ DWGF F+ LLD G + DD + L EV V D+
Sbjct: 100 FVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDS 142
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 296 FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL--EVCVQADA 336
F++ DWGF F+ LLD G + DD + L EV V D+
Sbjct: 100 FVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDS 142
>pdb|1G1O|A Chain A, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53sE54DL55S
pdb|1G1O|B Chain B, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53sE54DL55S
pdb|1G1O|C Chain C, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53sE54DL55S
pdb|1G1O|D Chain D, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53sE54DL55S
pdb|2QEL|A Chain A, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53s/e54d/l55s- Heated Protein
pdb|2QEL|B Chain B, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53s/e54d/l55s- Heated Protein
pdb|2QEL|C Chain C, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53s/e54d/l55s- Heated Protein
pdb|2QEL|D Chain D, Crystal Structure Of The Highly Amyloidogenic
Transthyretin Mutant Ttr G53s/e54d/l55s- Heated Protein
Length = 127
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
S D+HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SSDSHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 114 FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL--EVCVQADA 154
F++ DWGF F+ LLD G + DD + L EV V D+
Sbjct: 105 FVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS 147
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 296 FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL--EVCVQADA 336
F++ DWGF F+ LLD G + DD + L EV V D+
Sbjct: 105 FVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS 147
>pdb|5TTR|A Chain A, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|B Chain B, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|C Chain C, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|D Chain D, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|E Chain E, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|F Chain F, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|G Chain G, Leu 55 Pro Transthyretin Crystal Structure
pdb|5TTR|H Chain H, Leu 55 Pro Transthyretin Crystal Structure
pdb|2B14|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Leu 55 Pro
pdb|2B14|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Leu 55 Pro
pdb|3DJZ|A Chain A, Crystal Structure Of Transthyretin Variant L55p At Neutral
Ph
pdb|3DJZ|B Chain B, Crystal Structure Of Transthyretin Variant L55p At Neutral
Ph
pdb|3DK0|A Chain A, Crystal Structure Of Transthyretin Variant L55p At Acidic
Ph
pdb|3DK0|B Chain B, Crystal Structure Of Transthyretin Variant L55p At Acidic
Ph
pdb|3SSG|A Chain A, Structure Of Transthyretin L55p In Complex With Zn
Length = 127
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGEPHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 114 FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL--EVCVQAD 153
F++ DWGF F+ LLD G + DD + L EV V D
Sbjct: 104 FVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 145
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 296 FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL--EVCVQAD 335
F++ DWGF F+ LLD G + DD + L EV V D
Sbjct: 104 FVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 145
>pdb|1DVX|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Diclofenac
pdb|1DVX|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Diclofenac
pdb|1DVY|A Chain A, Crystal Structure Of Transthyretin In Complex With N-(M-
Trifluoromethylphenyl) Phenoxazine-4,6-Dicarboxylic Acid
pdb|1DVY|B Chain B, Crystal Structure Of Transthyretin In Complex With N-(M-
Trifluoromethylphenyl) Phenoxazine-4,6-Dicarboxylic Acid
pdb|1DVZ|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
O- Trifluoromethylphenyl Anthranilic Acid
pdb|1DVZ|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
O- Trifluoromethylphenyl Anthranilic Acid
pdb|1DVQ|A Chain A, Crystal Structure Of Human Transthyretin
pdb|1DVQ|B Chain B, Crystal Structure Of Human Transthyretin
pdb|1DVS|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Resveratrol
pdb|1DVS|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Resveratrol
pdb|1DVT|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Flurbiprofen
pdb|1DVT|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Flurbiprofen
pdb|1DVU|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Dibenzofuran- 4,6-Dicarboxylic Acid
pdb|1DVU|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Dibenzofuran- 4,6-Dicarboxylic Acid
Length = 124
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|3FC8|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaome
pdb|3FC8|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaome
pdb|3FCB|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaoh
pdb|3FCB|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaoh
pdb|4ABQ|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-1
pdb|4ABQ|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-1
pdb|4ABU|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-2
pdb|4ABU|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-2
pdb|4ABV|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-3
pdb|4ABV|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-3
pdb|4ABW|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-6
pdb|4ABW|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-6
pdb|4AC2|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-7
pdb|4AC2|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-7
Length = 124
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|4DEU|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Naringenin
(Ttrwt:nar)
pdb|4DEU|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Naringenin
(Ttrwt:nar)
Length = 117
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 44 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 103
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 104 SPYSYSTTAV 113
>pdb|2JFX|A Chain A, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFX|B Chain B, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFZ|A Chain A, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2JFZ|B Chain B, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2JFY|A Chain A, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFY|B Chain B, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate
pdb|2W4I|A Chain A, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2W4I|B Chain B, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2W4I|E Chain E, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2W4I|F Chain F, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|4B1F|A Chain A, Design Of Inhibitors Of Helicobacter Pylori Glutamate
Racemase As Selective Antibacterial Agents:
Incorporation Of Imidazoles Onto A Core
Pyrazolopyrimidinedione Scaffold To Improve
Bioavailabilty
pdb|4B1F|B Chain B, Design Of Inhibitors Of Helicobacter Pylori Glutamate
Racemase As Selective Antibacterial Agents:
Incorporation Of Imidazoles Onto A Core
Pyrazolopyrimidinedione Scaffold To Improve
Bioavailabilty
Length = 255
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 217 RVFHELQF----SDKPVGTKKLT--KSFGWETLDSFMQHDVQEFLRVCN 259
R+F E+ + + P GTK T K FG E LD F H+++ + CN
Sbjct: 23 RLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACN 71
>pdb|2PAB|A Chain A, Structure Of Prealbumin, Secondary, Tertiary And
Quaternary Interactions Determined By Fourier Refinement
At 1.8 Angstroms
pdb|2PAB|B Chain B, Structure Of Prealbumin, Secondary, Tertiary And
Quaternary Interactions Determined By Fourier Refinement
At 1.8 Angstroms
pdb|1THC|A Chain A, Crystal Structure Determination At 2.3a Of Human
Transthyretin-3',5'-
Dibromo-2',4,4',6-Tetra-Hydroxyaurone Complex
pdb|1THC|B Chain B, Crystal Structure Determination At 2.3a Of Human
Transthyretin-3',5'-
Dibromo-2',4,4',6-Tetra-Hydroxyaurone Complex
pdb|1THA|A Chain A, Mechanism Of Molecular Recognition. Structural Aspects Of
3, 3'-Diiodo-L-Thyronine Binding To Human Serum
Transthyretin
pdb|1THA|B Chain B, Mechanism Of Molecular Recognition. Structural Aspects Of
3, 3'-Diiodo-L-Thyronine Binding To Human Serum
Transthyretin
pdb|1TLM|A Chain A, Structural Aspects Of Inotropic Bipyridine Binding:
Crystal Structure Determination To 1.9 Angstroms Of The
Human Serum Transthyretin-Milrinone Complex
pdb|1TLM|B Chain B, Structural Aspects Of Inotropic Bipyridine Binding:
Crystal Structure Determination To 1.9 Angstroms Of The
Human Serum Transthyretin-Milrinone Complex
pdb|1RLB|A Chain A, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|B Chain B, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|C Chain C, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|D Chain D, Retinol Binding Protein Complexed With Transthyretin
pdb|1QAB|A Chain A, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|B Chain B, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|C Chain C, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|D Chain D, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
Length = 127
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|2WQA|A Chain A, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|B Chain B, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|C Chain C, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|D Chain D, Complex Of Ttr And Rbp4 And Oleic Acid
Length = 129
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 54 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 113
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 114 SPYSYSTTAV 123
>pdb|3I9P|A Chain A, Crystal Structure Of Human Transthyretin - Wild Type
pdb|3I9P|B Chain B, Crystal Structure Of Human Transthyretin - Wild Type
pdb|3NEE|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With Gc-1
(Ttrwt:gc-1)
pdb|3NEE|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With Gc-1
(Ttrwt:gc-1)
pdb|3NEO|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With Gc-24
(Ttrwt:gc-24)
pdb|3NEO|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With Gc-24
(Ttrwt:gc-24)
pdb|4DER|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Apigenin
(Ttrwt:api)
pdb|4DER|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Apigenin
(Ttrwt:api)
pdb|4DES|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Chrysin
(Ttrwt:chr)
pdb|4DES|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Chrysin
(Ttrwt:chr)
pdb|4DET|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Kaempferol
(Ttrwt:kae)
pdb|4DET|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Kaempferol
(Ttrwt:kae)
Length = 116
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 43 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 102
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 103 SPYSYSTTAV 112
>pdb|1TSH|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1TSH|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|3DO4|A Chain A, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|B Chain B, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|C Chain C, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|D Chain D, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|E Chain E, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|F Chain F, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|G Chain G, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|H Chain H, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
Length = 127
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTAEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|1TTB|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTB|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1ETB|1 Chain 1, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
pdb|1ETB|2 Chain 2, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
Length = 127
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIATLL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|1TTR|A Chain A, Transthyretin-V122I CARDIOMYOPATHIC MUTANT
pdb|1TTR|B Chain B, Transthyretin-V122I CARDIOMYOPATHIC MUTANT
Length = 127
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|4ANK|A Chain A, Crystallographic Study Of Novel Transthyretin Ligands
Exhibiting Negative-Cooperativity Between Two T4 Binding
Sites.
pdb|4ANK|B Chain B, Crystallographic Study Of Novel Transthyretin Ligands
Exhibiting Negative-Cooperativity Between Two T4 Binding
Sites.
pdb|4DEW|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Luteolin
(Ttrwt:lut)
pdb|4DEW|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Luteolin
(Ttrwt:lut)
Length = 147
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 72 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 131
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 132 SPYSYSTTAV 141
>pdb|3NES|A Chain A, V30m Mutant Human Transthyretin (Ttr) Complexed With Gc-1
(V30m:gc-1)
pdb|3NES|B Chain B, V30m Mutant Human Transthyretin (Ttr) Complexed With Gc-1
(V30m:gc-1)
pdb|3NEX|A Chain A, V30m Mutant Human Transthyretin (Ttr) Complexed With Gc-24
(V30m:gc- 24)
pdb|3NEX|B Chain B, V30m Mutant Human Transthyretin (Ttr) Complexed With Gc-24
(V30m:gc- 24)
Length = 116
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 43 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 102
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 103 SPYSYSTTAV 112
>pdb|1ZCR|A Chain A, Crystal Structure Of Human Transthyretin With Bound Iodide
pdb|1ZCR|B Chain B, Crystal Structure Of Human Transthyretin With Bound Iodide
pdb|1ZD6|A Chain A, Crystal Structure Of Human Transthyretin With Bound
Chloride
pdb|1ZD6|B Chain B, Crystal Structure Of Human Transthyretin With Bound
Chloride
Length = 128
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 53 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 112
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 113 SPYSYSTTAV 122
>pdb|1ETA|1 Chain 1, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
pdb|1ETA|2 Chain 2, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
Length = 128
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 53 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 112
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 113 SPYSYSTTAV 122
>pdb|1TTA|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTA|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TYR|A Chain A, Transthyretin Complex With Retinoic Acid
pdb|1TYR|B Chain B, Transthyretin Complex With Retinoic Acid
pdb|2ROY|A Chain A, Transthyretin (Also Called Prealbumin) Complex With
3',5'-Dinitro-N- Acetyl-L-Thyronine
pdb|2ROY|B Chain B, Transthyretin (Also Called Prealbumin) Complex With
3',5'-Dinitro-N- Acetyl-L-Thyronine
pdb|2ROX|A Chain A, Transthyretin (Also Called Prealbumin) Complex With
Thyroxine (T4)
pdb|2ROX|B Chain B, Transthyretin (Also Called Prealbumin) Complex With
Thyroxine (T4)
pdb|1BM7|A Chain A, Human Transthyretin (Prealbumin) Complex With Flufenamic
Acid (2-[[3-(Trifluoromethyl)phenyl]amino] Benzoic Acid)
pdb|1BM7|B Chain B, Human Transthyretin (Prealbumin) Complex With Flufenamic
Acid (2-[[3-(Trifluoromethyl)phenyl]amino] Benzoic Acid)
pdb|1BMZ|A Chain A, Human Transthyretin (Prealbumin)
pdb|1BMZ|B Chain B, Human Transthyretin (Prealbumin)
pdb|1E3F|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E3F|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E4H|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E4H|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E5A|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E5A|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1F41|A Chain A, Crystal Structure Of Human Transthyretin At 1.5a
Resolution
pdb|1F41|B Chain B, Crystal Structure Of Human Transthyretin At 1.5a
Resolution
pdb|1ICT|A Chain A, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|B Chain B, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|C Chain C, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|D Chain D, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|E Chain E, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|F Chain F, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|G Chain G, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|H Chain H, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1TT6|A Chain A, The Orthorhombic Crystal Structure Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TT6|B Chain B, The Orthorhombic Crystal Structure Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|A Chain A, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|B Chain B, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|C Chain C, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|D Chain D, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1U21|A Chain A, Transthyretin With Tethered Inhibitor On One Monomer.
pdb|1U21|B Chain B, Transthyretin With Tethered Inhibitor On One Monomer.
pdb|1Z7J|A Chain A, Human Transthyretin (Also Called Prealbumin) Complex With
3, 3',5,5'- Tetraiodothyroacetic Acid (T4ac)
pdb|1Z7J|B Chain B, Human Transthyretin (Also Called Prealbumin) Complex With
3, 3',5,5'- Tetraiodothyroacetic Acid (T4ac)
pdb|1Y1D|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal
pdb|1Y1D|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal
pdb|2B77|A Chain A, Human Transthyretin (ttr) Complexed With Diflunisal
Analogues- Ttr.2',
4'-dichloro-4-hydroxy-1,1'-biphenyl-3-carboxylic Acid
pdb|2B77|B Chain B, Human Transthyretin (ttr) Complexed With Diflunisal
Analogues- Ttr.2',
4'-dichloro-4-hydroxy-1,1'-biphenyl-3-carboxylic Acid
pdb|2B9A|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr.3',5'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2B9A|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr.3',5'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F7I|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr. 2',6'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F7I|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr. 2',6'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F8I|A Chain A, Human Transthyretin (Ttr) Complexed With Benzoxazole
pdb|2F8I|B Chain B, Human Transthyretin (Ttr) Complexed With Benzoxazole
pdb|2FBR|A Chain A, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (4 Carbon Linker)
pdb|2FBR|B Chain B, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (4 Carbon Linker)
pdb|2FLM|A Chain A, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (6 Carbon Linker)
pdb|2FLM|B Chain B, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (6 Carbon Linker)
pdb|2G5U|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4,4'-Dihydroxy-3,3',5,5'-Tetrachlorobiphenyl
pdb|2G5U|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4,4'-Dihydroxy-3,3',5,5'-Tetrachlorobiphenyl
pdb|2G9K|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-2',3,3',4',5-Pentachlorobiphenyl
pdb|2G9K|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-2',3,3',4',5-Pentachlorobiphenyl
pdb|2GAB|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-3,3',5,4'-Tetrachlorobiphenyl
pdb|2GAB|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-3,3',5,4'-Tetrachlorobiphenyl
pdb|2B15|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
Human Transthyretin
pdb|2B15|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
Human Transthyretin
pdb|2G4G|A Chain A, Crystal Structure Of Human Transthyretin At Ph 4.6
pdb|2G4G|B Chain B, Crystal Structure Of Human Transthyretin At Ph 4.6
pdb|3B56|A Chain A, Crystal Structure Of Transthyretin In Complex With 3,5-
Diiodosalicylic Acid
pdb|3B56|B Chain B, Crystal Structure Of Transthyretin In Complex With 3,5-
Diiodosalicylic Acid
pdb|2QGB|A Chain A, Human Transthyretin (Ttr) In Apo-Form
pdb|2QGB|B Chain B, Human Transthyretin (Ttr) In Apo-Form
pdb|2QGC|A Chain A, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethyl-4- Hydroxyphenyl)benzoxazole
pdb|2QGC|B Chain B, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethyl-4- Hydroxyphenyl)benzoxazole
pdb|2QGD|A Chain A, Human Transthyretin (Ttr) Complexed With 2-(3,5-Dibromo-4-
Hydroxyphenyl)benzoxazole
pdb|2QGD|B Chain B, Human Transthyretin (Ttr) Complexed With 2-(3,5-Dibromo-4-
Hydroxyphenyl)benzoxazole
pdb|2QGE|A Chain A, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethylphenyl) Benzoxazole
pdb|2QGE|B Chain B, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethylphenyl) Benzoxazole
pdb|3D2T|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
pdb|3D2T|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
pdb|3CBR|A Chain A, Crystal Structure Of Human Transthyretin (Ttr) At Ph3.5
pdb|3CBR|B Chain B, Crystal Structure Of Human Transthyretin (Ttr) At Ph3.5
pdb|3D7P|A Chain A, Crystal Structure Of Human Transthyretin (Ttr) At Ph 4.0
pdb|3D7P|B Chain B, Crystal Structure Of Human Transthyretin (Ttr) At Ph 4.0
pdb|3CN0|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dimethyl-4-
Hydroxystilbene
pdb|3CN0|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dimethyl-4-
Hydroxystilbene
pdb|3CN1|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxystilbene
pdb|3CN1|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxystilbene
pdb|3CN2|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxybiphenyl
pdb|3CN2|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxybiphenyl
pdb|3CN3|A Chain A, Human Transthyretin (Ttr) In Complex With 1,3-Dibromo-2-
Hydroxy-5-Phenoxybenzene
pdb|3CN3|B Chain B, Human Transthyretin (Ttr) In Complex With 1,3-Dibromo-2-
Hydroxy-5-Phenoxybenzene
pdb|3CN4|A Chain A, Human Transthyretin (Ttr) In Complex With
N-(3,5-Dibromo-4- Hydroxyphenyl)benzamide
pdb|3CN4|B Chain B, Human Transthyretin (Ttr) In Complex With
N-(3,5-Dibromo-4- Hydroxyphenyl)benzamide
pdb|3BSZ|A Chain A, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|B Chain B, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|C Chain C, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|D Chain D, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3GLZ|A Chain A, Human Transthyretin (Ttr) Complexed With(E)-3-(2-
(Trifluoromethyl)benzylideneaminooxy)propanoic Acid
(Inhibitor 11)
pdb|3GLZ|B Chain B, Human Transthyretin (Ttr) Complexed With(E)-3-(2-
(Trifluoromethyl)benzylideneaminooxy)propanoic Acid
(Inhibitor 11)
pdb|3GS0|A Chain A, Human Transthyretin (Ttr) Complexed With
(S)-3-(9h-Fluoren- 9-Ylideneaminooxy)-2-Methylpropanoic
Acid (Inhibitor 16)
pdb|3GS0|B Chain B, Human Transthyretin (Ttr) Complexed With
(S)-3-(9h-Fluoren- 9-Ylideneaminooxy)-2-Methylpropanoic
Acid (Inhibitor 16)
pdb|3GS4|A Chain A, Human Transthyretin (Ttr) Complexed With 3-(9h-Fluoren-9-
Ylideneaminooxy)propanoic Acid (Inhibitor 15)
pdb|3GS4|B Chain B, Human Transthyretin (Ttr) Complexed With 3-(9h-Fluoren-9-
Ylideneaminooxy)propanoic Acid (Inhibitor 15)
pdb|3GS7|A Chain A, Human Transthyretin (Ttr) Complexed With (E)-3-(2-
Methoxybenzylideneaminooxy)propanoic Acid (Inhibitor 13)
pdb|3GS7|B Chain B, Human Transthyretin (Ttr) Complexed With (E)-3-(2-
Methoxybenzylideneaminooxy)propanoic Acid (Inhibitor 13)
pdb|3ESN|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,6-Dimethylbenzamide
pdb|3ESN|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,6-Dimethylbenzamide
pdb|3ESO|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,5-Dichlorobenzamide
pdb|3ESO|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,5-Dichlorobenzamide
pdb|3ESP|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide
pdb|3ESP|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide
pdb|3A4D|A Chain A, Crystal Structure Of Human Transthyretin (Wild-Type)
pdb|3A4D|B Chain B, Crystal Structure Of Human Transthyretin (Wild-Type)
pdb|3IMR|A Chain A, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dichlorostyryl)phenol
pdb|3IMR|B Chain B, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dichlorostyryl)phenol
pdb|3IMS|A Chain A, Transthyretin In Complex With 2,6-Dibromo-4-(2,6-
Dichlorophenethyl)phenol
pdb|3IMS|B Chain B, Transthyretin In Complex With 2,6-Dibromo-4-(2,6-
Dichlorophenethyl)phenol
pdb|3IMT|A Chain A, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromophenol
pdb|3IMT|B Chain B, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromophenol
pdb|3IMU|A Chain A, Transthyretin In Complex With (E)-4-(3-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMU|B Chain B, Transthyretin In Complex With (E)-4-(3-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMV|A Chain A, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMV|B Chain B, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMW|A Chain A, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dimethoxystyryl)aniline
pdb|3IMW|B Chain B, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dimethoxystyryl)aniline
pdb|3KGU|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With
Genistein (Ttrwt:gen) Ph 7.5
pdb|3KGU|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With
Genistein (Ttrwt:gen) Ph 7.5
pdb|3IPB|A Chain A, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (11 Carbon Linker).
pdb|3IPB|B Chain B, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (11 Carbon Linker).
pdb|3IPE|A Chain A, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (7 Carbon Linker).
pdb|3IPE|B Chain B, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (7 Carbon Linker).
pdb|3M1O|A Chain A, Human Transthyretin (Ttr) Complexed With
2-((3,5-Dichloro-4- Hydroxyphenyl)amino)benzoic Acid
pdb|3M1O|B Chain B, Human Transthyretin (Ttr) Complexed With
2-((3,5-Dichloro-4- Hydroxyphenyl)amino)benzoic Acid
pdb|3P3R|A Chain A, Transthyretin In Complex With
(3,4-Dihydroxy-5-Nitrophenyl)(2- Fluorophenyl)methanone
pdb|3P3R|B Chain B, Transthyretin In Complex With
(3,4-Dihydroxy-5-Nitrophenyl)(2- Fluorophenyl)methanone
pdb|3P3S|A Chain A, Human Transthyretin (Ttr) Complexed With
(Z)-5-(3,5-Dibromo-4-
Hydroxybenzylidene)-Imino-1-Methylimidazolidin-4-One
pdb|3P3S|B Chain B, Human Transthyretin (Ttr) Complexed With
(Z)-5-(3,5-Dibromo-4-
Hydroxybenzylidene)-Imino-1-Methylimidazolidin-4-One
pdb|3P3T|A Chain A, Human Transthyretin (Ttr) Complexed With
4-(3-(2-Flourophenoxy) Propyl)-3,5-Dimethyl-1h-Pyrazole
pdb|3P3T|B Chain B, Human Transthyretin (Ttr) Complexed With
4-(3-(2-Flourophenoxy) Propyl)-3,5-Dimethyl-1h-Pyrazole
pdb|3P3U|A Chain A, Human Transthyretin (Ttr) Complexed With
5-(2-Ethoxyphenyl)-3- (Pyridin-4-Yl)-1,2,4-Oxadiazole
pdb|3P3U|B Chain B, Human Transthyretin (Ttr) Complexed With
5-(2-Ethoxyphenyl)-3- (Pyridin-4-Yl)-1,2,4-Oxadiazole
pdb|3TCT|A Chain A, Structure Of Wild-Type Ttr In Complex With Tafamidis
pdb|3TCT|B Chain B, Structure Of Wild-Type Ttr In Complex With Tafamidis
pdb|4ACT|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-17
pdb|4ACT|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-17
pdb|4AC4|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-18
pdb|4AC4|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-18
pdb|3W3B|A Chain A, Crystal Structure Of Wild-type Human Transthyretin
pdb|3W3B|B Chain B, Crystal Structure Of Wild-type Human Transthyretin
pdb|4IIZ|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Lumiracoxib
pdb|4IIZ|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Lumiracoxib
pdb|4IK6|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Lumiracoxib
pdb|4IK6|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Lumiracoxib
pdb|4IK7|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Indomethacin
pdb|4IK7|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Indomethacin
pdb|4IKI|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Indomethacin
pdb|4IKI|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Indomethacin
pdb|4IKJ|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKJ|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKK|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKK|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKL|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKL|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4FI6|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichlorophenyl)-1,3,4-oxadiazol-2-yl)-
Benzenesulfonamide
pdb|4FI6|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichlorophenyl)-1,3,4-oxadiazol-2-yl)-
Benzenesulfonamide
pdb|4FI7|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,
4-oxadiazol-2-yl)- Benzenesulfonamide
pdb|4FI7|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,
4-oxadiazol-2-yl)- Benzenesulfonamide
pdb|4FI8|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
4-bromo-3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-
Oxadiazol-2-yl)-benzenesulfonamide
pdb|4FI8|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
4-bromo-3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-
Oxadiazol-2-yl)-benzenesulfonamide
Length = 127
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|1TTC|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTC|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|3DJT|A Chain A, Crystal Structure Of Transthyretin Variant V30m At Acidic
Ph
pdb|3DJT|B Chain B, Crystal Structure Of Transthyretin Variant V30m At Acidic
Ph
pdb|3KGS|A Chain A, V30m Mutant Human Transthyretin (Ttr) (Apov30m) Ph 7.5
pdb|3KGS|B Chain B, V30m Mutant Human Transthyretin (Ttr) (Apov30m) Ph 7.5
pdb|3KGT|A Chain A, V30m Mutant Human Transthyretin (Ttr) Complexed With
Geniste (V30m:gen) Ph 7.5
pdb|3KGT|B Chain B, V30m Mutant Human Transthyretin (Ttr) Complexed With
Geniste (V30m:gen) Ph 7.5
pdb|3NG5|A Chain A, Crystal Structure Of V30m Transthyretin Complexed With
(-)- Epigallocatechin Gallate (Egcg)
pdb|3NG5|B Chain B, Crystal Structure Of V30m Transthyretin Complexed With
(-)- Epigallocatechin Gallate (Egcg)
Length = 127
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|3I9I|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t - #2
pdb|3I9I|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t - #2
pdb|3TFB|A Chain A, Transthyretin Natural Mutant A25t
pdb|3TFB|B Chain B, Transthyretin Natural Mutant A25t
Length = 116
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 43 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 102
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 103 SPYSYSTTAV 112
>pdb|3I9A|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t - #1
pdb|3I9A|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t - #1
pdb|3OZK|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Thyroxine (T4)
pdb|3OZK|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Thyroxine (T4)
pdb|3OZL|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Flufenamic Acid.
pdb|3OZL|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Flufenamic Acid
Length = 127
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|1BZ8|A Chain A, Transthyretin (Del Val122)
pdb|1BZ8|B Chain B, Transthyretin (Del Val122)
Length = 126
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|2TRH|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|2TRH|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|3CFM|A Chain A, Crystal Structure Of The Apo Form Of Human Wild-Type
Transthyretin
pdb|3CFM|B Chain B, Crystal Structure Of The Apo Form Of Human Wild-Type
Transthyretin
pdb|3CFN|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
1-Anilino-8- Naphthalene Sulfonate
pdb|3CFN|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
1-Anilino-8- Naphthalene Sulfonate
pdb|3CFQ|A Chain A, Crystal Structure Of Human Wild-Type Transthyretin In
Complex With Diclofenac
pdb|3CFQ|B Chain B, Crystal Structure Of Human Wild-Type Transthyretin In
Complex With Diclofenac
pdb|3CFT|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
1- Amino-5-Naphthalene Sulfonate
pdb|3CFT|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
1- Amino-5-Naphthalene Sulfonate
Length = 118
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 43 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 102
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 103 SPYSYSTTAV 112
>pdb|1BZD|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1BZD|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|3BT0|A Chain A, Crystal Structure Of Transthyretin Variant V20s
pdb|3BT0|B Chain B, Crystal Structure Of Transthyretin Variant V20s
Length = 127
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 114 FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL--EVCVQAD 153
F++ DWGF F+ LLD G + DD + L EV V D
Sbjct: 104 FVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 296 FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL--EVCVQAD 335
F++ DWGF F+ LLD G + DD + L EV V D
Sbjct: 104 FVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145
>pdb|2GRG|A Chain A, Solution Nmr Structure Of Protein Ynr034w-A From
Saccharomyces Cerevisiae. Northeast Structural Genomics
Consortium Target Yt727; Ontario Center For Structural
Proteomics Target Yst6499
Length = 120
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 582 ATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPP 618
A YI HA GH++VY PK N+ +PP
Sbjct: 85 AQYIGHAF------KKAGHFIVYFTPKNKNREGVVPP 115
>pdb|3DJR|A Chain A, Crystal Structure Of Transthyretin Variant L58h At Neutral
Ph
pdb|3DJR|B Chain B, Crystal Structure Of Transthyretin Variant L58h At Neutral
Ph
pdb|3DJS|A Chain A, Crystal Structure Of Transthyretin Variant L58h At Acidic
Ph
pdb|3DJS|B Chain B, Crystal Structure Of Transthyretin Variant L58h At Acidic
Ph
Length = 127
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGHTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|2H4E|A Chain A, Crystal Structure Of Cys10 Sulfonated Transthyretin
pdb|2H4E|B Chain B, Crystal Structure Of Cys10 Sulfonated Transthyretin
pdb|3HJ0|A Chain A, Transthyretin In Complex With A Covalent Small Molecule
Kinetic Stabilizer
pdb|3HJ0|B Chain B, Transthyretin In Complex With A Covalent Small Molecule
Kinetic Stabilizer
Length = 127
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|1X7S|A Chain A, The X-Ray Crystallographic Structure Of The Amyloidogenic
Variant Ttr Tyr78phe
pdb|1X7S|B Chain B, The X-Ray Crystallographic Structure Of The Amyloidogenic
Variant Ttr Tyr78phe
pdb|2B16|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Tyr78phe
pdb|2B16|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Tyr78phe
Length = 127
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSFWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|3U2I|A Chain A, X-Ray Crystal Structure Of Human Transthyretin At Room
Temperature
pdb|3U2I|B Chain B, X-Ray Crystal Structure Of Human Transthyretin At Room
Temperature
pdb|3U2J|A Chain A, Neutron Crystal Structure Of Human Transthyretin
pdb|3U2J|B Chain B, Neutron Crystal Structure Of Human Transthyretin
Length = 117
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 42 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 101
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 102 SPYSYSTTAV 111
>pdb|1QWH|A Chain A, A Covalent Dimer Of Transthyretin That Affects The Amyloid
Pathway
pdb|1QWH|B Chain B, A Covalent Dimer Of Transthyretin That Affects The Amyloid
Pathway
Length = 117
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 42 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 101
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 102 SPYSYSTTAV 111
>pdb|1F86|A Chain A, Transthyretin Thr119met Protein Stabilisation
pdb|1F86|B Chain B, Transthyretin Thr119met Protein Stabilisation
Length = 115
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 43 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 102
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 103 SPYSYSTMAV 112
>pdb|1BZE|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1BZE|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1FHN|A Chain A, Transthyretin Stability As A Key Factor In Amyloidogenesis
pdb|1FHN|B Chain B, Transthyretin Stability As A Key Factor In Amyloidogenesis
Length = 127
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTMAV 121
>pdb|3A4E|A Chain A, Crystal Structure Of Human Transthyretin (E54g)
pdb|3A4E|B Chain B, Crystal Structure Of Human Transthyretin (E54g)
Length = 127
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 599 GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESI 653
G Y V I+ K K+ + PF + AEV+F PRR I+ L Y + T ++
Sbjct: 67 GIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAV 121
>pdb|3A4F|A Chain A, Crystal Structure Of Human Transthyretin (E54k)
pdb|3A4F|B Chain B, Crystal Structure Of Human Transthyretin (E54k)
Length = 127
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 599 GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESI 653
G Y V I+ K K+ + PF + AEV+F PRR I+ L Y + T ++
Sbjct: 67 GIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAV 121
>pdb|1FH2|A Chain A, Transthyretin Stability As A Key Factor In Amyloidogenesis
pdb|1FH2|B Chain B, Transthyretin Stability As A Key Factor In Amyloidogenesis
Length = 116
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 44 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 103
Query: 644 HAYLHMT 650
Y + T
Sbjct: 104 SPYSYST 110
>pdb|2TRY|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|2TRY|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKYYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|2G3Z|A Chain A, Crystal Structure Of Transthyretin Mutant I84a At Low Ph
pdb|2G3Z|B Chain B, Crystal Structure Of Transthyretin Mutant I84a At Low Ph
pdb|2G4E|A Chain A, Crystal Structure Of Transthyretin Mutant I84a At Neutral
Ph
pdb|2G4E|B Chain B, Crystal Structure Of Transthyretin Mutant I84a At Neutral
Ph
Length = 127
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGASPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 288 SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 337
+R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 102 NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 151
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 155
R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 103 RQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 151
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 288 SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 337
+R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 102 NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 151
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 155
R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 103 RQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 151
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 288 SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 337
+R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 103 NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 152
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 155
R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 104 RQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 152
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 288 SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 337
+R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 115 NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 164
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 155
R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 116 RQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 164
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 288 SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 337
+R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 102 NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 151
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 155
R++ L + + + GF T S L DP+KG D + C + +P
Sbjct: 103 RQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 151
>pdb|2G3X|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2G3X|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2NOY|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
pdb|2NOY|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
Length = 127
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGSSPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 488 QLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQ 547
Q+N G++D+ S ++ E+ + D V Q+ + E + P L Q
Sbjct: 937 QVNNLGQRDLPVSINFWVPVELNQEAVWMDVEVSHPQNPSLRCSSEKIAPPASDFLAHIQ 996
Query: 548 YDPVTDCSVKFNDRFE-----FYDRIELDDFLK 575
+PV DCS+ RF F + ELD LK
Sbjct: 997 KNPVLDCSIAGCLRFRCDVPSFSVQEELDFTLK 1029
>pdb|3CXF|A Chain A, Crystal Structure Of Transthyretin Variant Y114h
pdb|3CXF|B Chain B, Crystal Structure Of Transthyretin Variant Y114h
pdb|3DK2|A Chain A, Crystal Structure Of Transthyretin Variant Y114h At Acidic
Ph
pdb|3DK2|B Chain B, Crystal Structure Of Transthyretin Variant Y114h At Acidic
Ph
Length = 127
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PRR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALL 111
Query: 644 HAYLHMTESI 653
+ + T ++
Sbjct: 112 SPHSYSTTAV 121
>pdb|3KHZ|A Chain A, Crystal Structure Of R350a Mutant Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KHZ|B Chain B, Crystal Structure Of R350a Mutant Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
Length = 492
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 464 KMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGL 523
++I+F ++ N AE ++ N+ D+++ F+ ++E L+GD+ D+G+ L
Sbjct: 228 ELITFKSGERYNMVPDHAEARVLVKENMT---DVIQDFEYFLEQNHLQGDSTVDSGILVL 284
Query: 524 QDAEKGVTFENLPPVL----HLHLMRF----QYDPVTDCSVKFNDRFEF 564
K V + P + L+L++F D V F++R+ F
Sbjct: 285 TVEGKAV--HGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLF 331
>pdb|3KHX|A Chain A, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KHX|B Chain B, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KI9|A Chain A, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE MN2+ BOUND FORM
Length = 492
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 464 KMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGL 523
++I+F ++ N AE ++ N+ D+++ F+ ++E L+GD+ D+G+ L
Sbjct: 228 ELITFKSGERYNMVPDHAEARVLVKENMT---DVIQDFEYFLEQNHLQGDSTVDSGILVL 284
Query: 524 QDAEKGVTFENLPPVL----HLHLMRF----QYDPVTDCSVKFNDRFEF 564
K V + P + L+L++F D V F++R+ F
Sbjct: 285 TVEGKAV--HGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLF 331
>pdb|1X7T|A Chain A, Structure Of Ttr R104h: A Non-Amyloidogenic Variant With
Protective Clinical Effects
pdb|1X7T|B Chain B, Structure Of Ttr R104h: A Non-Amyloidogenic Variant With
Protective Clinical Effects
Length = 127
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 593 SGDNHG---------GHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
SG+ HG G Y V I+ K K+ + PF + AEV+F PR I+ L
Sbjct: 52 SGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRHYTIAALL 111
Query: 644 HAYLHMTESI 653
Y + T ++
Sbjct: 112 SPYSYSTTAV 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,240,074
Number of Sequences: 62578
Number of extensions: 1080424
Number of successful extensions: 2346
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2177
Number of HSP's gapped (non-prelim): 139
length of query: 773
length of database: 14,973,337
effective HSP length: 106
effective length of query: 667
effective length of database: 8,340,069
effective search space: 5562826023
effective search space used: 5562826023
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)