BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17537
(773 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93009|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7
PE=1 SV=2
Length = 1102
Score = 628 bits (1619), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/471 (64%), Positives = 361/471 (76%), Gaps = 49/471 (10%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
F CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+FM +S++
Sbjct: 117 FFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEV 176
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTN 373
DP+KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMNSLLQTL+FTN
Sbjct: 177 TDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTN 236
Query: 374 QLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDV 433
QLRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWETLDSFMQHDV
Sbjct: 237 QLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDV 296
Query: 434 QEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG 493
QE RVLLD +E KMKGTCVEGT+PKLF GKM+S+I+CK+V+Y S R E +YDIQL++KG
Sbjct: 297 QELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG 356
Query: 494 KKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTD 553
KK+I ESF DY+ E L+GDNKYDAG HGLQ+AEKGV F LPPVLHL LMRF YDP TD
Sbjct: 357 KKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTD 416
Query: 554 CSVKFNDRFEFYDRIELDDFLKEKGPT-PATYILHAVLVHSGDNHGGHYVVYINPKGDNK 612
++K NDRFEF +++ LD+FL++ P PA YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 417 QNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGK 476
Query: 613 STALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSK 672
WCKFDDDVVS+C+K
Sbjct: 477 ----------------------------------------------WCKFDDDVVSRCTK 490
Query: 673 DEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQE 723
+EA+ HN+GG+D+D L+V+H TNAYMLVYIRES+L+ VL+ VT+ DIPQ+
Sbjct: 491 EEAIEHNYGGHDDD--LSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQ 539
Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 168/256 (65%), Gaps = 43/256 (16%)
Query: 45 ATATNQDVEMNDADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL 104
A + + D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 47 ALSDGHNTAEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFY 106
Query: 105 -------------------------------------------VRRRIQHLFFIKENDWG 121
RRI HLFF KENDWG
Sbjct: 107 PDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWG 166
Query: 122 FSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMN 181
FS+FM +S++ DP+KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMN
Sbjct: 167 FSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMN 226
Query: 182 SLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWE 241
SLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWE
Sbjct: 227 SLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWE 286
Query: 242 TLDSFMQHDVQEFLRV 257
TLDSFMQHDVQE RV
Sbjct: 287 TLDSFMQHDVQELCRV 302
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 605 INPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHP 658
++P+ LP FDKD +V+ F K+Y+P+ + ++Y GH Y ++ I + P
Sbjct: 665 VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLP 718
>sp|Q4VSI4|UBP7_RAT Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus
GN=Usp7 PE=1 SV=1
Length = 1103
Score = 627 bits (1617), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/471 (64%), Positives = 361/471 (76%), Gaps = 49/471 (10%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
F CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+FM +S++
Sbjct: 118 FFLQCNAESDSTSWSCHAQAVLKIINYRDDDKSFSRRISHLFFHKENDWGFSNFMAWSEV 177
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTN 373
DP+KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMNSLLQTL+FTN
Sbjct: 178 TDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTN 237
Query: 374 QLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDV 433
QLRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWETLDSFMQHDV
Sbjct: 238 QLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDV 297
Query: 434 QEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG 493
QE RVLLD +E KMKGTCVEGT+PKLF GKM+S+I+CK+V+Y S R E +YDIQL++KG
Sbjct: 298 QELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG 357
Query: 494 KKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTD 553
KK+I ESF DY+ E L+GDNKYDAG HGLQ+AEKGV F LPPVLHL LMRF YDP TD
Sbjct: 358 KKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTD 417
Query: 554 CSVKFNDRFEFYDRIELDDFLKEKGPT-PATYILHAVLVHSGDNHGGHYVVYINPKGDNK 612
++K NDRFEF +++ LD+FL++ P PA YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 418 QNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGK 477
Query: 613 STALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSK 672
WCKFDDDVVS+C+K
Sbjct: 478 ----------------------------------------------WCKFDDDVVSRCTK 491
Query: 673 DEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQE 723
+EA+ HN+GG+D+D L+V+H TNAYMLVYIRES+L+ VL+ VT+ DIPQ+
Sbjct: 492 EEAIEHNYGGHDDD--LSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQ 540
Score = 295 bits (754), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/245 (60%), Positives = 165/245 (67%), Gaps = 43/245 (17%)
Query: 56 DADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL----------- 104
D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 59 DMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 118
Query: 105 --------------------------------VRRRIQHLFFIKENDWGFSHFMTFSDLL 132
RRI HLFF KENDWGFS+FM +S++
Sbjct: 119 FLQCNAESDSTSWSCHAQAVLKIINYRDDDKSFSRRISHLFFHKENDWGFSNFMAWSEVT 178
Query: 133 DPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQ 192
DP+KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMNSLLQTL+FTNQ
Sbjct: 179 DPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQ 238
Query: 193 LRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQ 252
LRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWETLDSFMQHDVQ
Sbjct: 239 LRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQ 298
Query: 253 EFLRV 257
E RV
Sbjct: 299 ELCRV 303
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 605 INPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHP 658
++P+ LP FDKD +V+ F K+Y+P+ + ++Y GH Y ++ I + P
Sbjct: 666 VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLP 719
>sp|Q6U7I1|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7
PE=2 SV=1
Length = 1101
Score = 627 bits (1617), Expect = e-178, Method: Compositional matrix adjust.
Identities = 305/471 (64%), Positives = 361/471 (76%), Gaps = 49/471 (10%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
F CN E++S++WSC+A A L ++ K + FSRRI HLFF KENDWGFS+FM +S++
Sbjct: 117 FFLQCNAESDSTSWSCHAQAVLKIINYKDDEKSFSRRISHLFFHKENDWGFSNFMAWSEV 176
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTN 373
DP+KGFI++D + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMNSLLQTL+FTN
Sbjct: 177 TDPEKGFIEEDKVTFEVYVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTN 236
Query: 374 QLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDV 433
QLRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWETLDSFMQHDV
Sbjct: 237 QLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDV 296
Query: 434 QEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG 493
QE RVLLD +E KMKGTCVEGT+PKLF GKM+S+I+CK V+Y S R E +YDIQL++KG
Sbjct: 297 QELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKHVDYRSERIEDYYDIQLSIKG 356
Query: 494 KKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTD 553
KK+I ESF DY+ E L+GDNKYDAG HGLQ+AEKGV F LPPVLHL LMRF YDP TD
Sbjct: 357 KKNIFESFIDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTD 416
Query: 554 CSVKFNDRFEFYDRIELDDFLKEKGPT-PATYILHAVLVHSGDNHGGHYVVYINPKGDNK 612
++K NDRFEF +++ LD+FL++ P PA YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 417 QNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGK 476
Query: 613 STALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSK 672
WCKFDDDVVS+C+K
Sbjct: 477 ----------------------------------------------WCKFDDDVVSRCTK 490
Query: 673 DEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQE 723
+EA+ HN+GG+D+D L+V+H TNAYMLVYIRES+L+ VL+ VT+ DIPQ+
Sbjct: 491 EEAIEHNYGGHDDD--LSVRHCTNAYMLVYIRESKLSEVLQPVTDHDIPQQ 539
Score = 296 bits (759), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 151/256 (58%), Positives = 171/256 (66%), Gaps = 43/256 (16%)
Query: 45 ATATNQDVEMNDADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL 104
A A + D +D+ RSE F F VE + L ++ LSPP + RNLPWKIM M +L
Sbjct: 47 AMADGHNNTEEDMEDDTSWRSEATFQFTVERFNRLSESVLSPPCFVRNLPWKIMVMPRLY 106
Query: 105 -------------------------------------------VRRRIQHLFFIKENDWG 121
RRI HLFF KENDWG
Sbjct: 107 PDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYKDDEKSFSRRISHLFFHKENDWG 166
Query: 122 FSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMN 181
FS+FM +S++ DP+KGFI++D + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMN
Sbjct: 167 FSNFMAWSEVTDPEKGFIEEDKVTFEVYVQADAPHGVAWDSKKHTGYVGLKNQGATCYMN 226
Query: 182 SLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWE 241
SLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWE
Sbjct: 227 SLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWE 286
Query: 242 TLDSFMQHDVQEFLRV 257
TLDSFMQHDVQE RV
Sbjct: 287 TLDSFMQHDVQELCRV 302
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 605 INPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHP 658
++P+ LP FDKD +V+ F K+Y+P+ + ++Y GH Y ++ I + P
Sbjct: 665 VDPEMAATGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLP 718
>sp|Q6A4J8|UBP7_MOUSE Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7
PE=1 SV=1
Length = 1103
Score = 625 bits (1612), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/471 (64%), Positives = 360/471 (76%), Gaps = 49/471 (10%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
F CN E++S++WSC+A A L ++ + + FSRRI HLFF +ENDWGFS+FM +S++
Sbjct: 118 FFLQCNAESDSTSWSCHAQAVLKIINYRDDDKSFSRRISHLFFHEENDWGFSNFMAWSEV 177
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTN 373
DP+KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMNSLLQTL+FTN
Sbjct: 178 TDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTN 237
Query: 374 QLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDV 433
QLRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWETLDSFMQHDV
Sbjct: 238 QLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDV 297
Query: 434 QEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG 493
QE RVLLD +E KMKGTCVEGT+PKLF GKM+S+I+CK V+Y S R E +YDIQL++KG
Sbjct: 298 QELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKDVDYRSDRREDYYDIQLSIKG 357
Query: 494 KKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTD 553
KK+I ESF DY+ E L+GDNKYDAG HGLQ+AEKGV F LPPVLHL LMRF YDP TD
Sbjct: 358 KKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTD 417
Query: 554 CSVKFNDRFEFYDRIELDDFLKEKGPT-PATYILHAVLVHSGDNHGGHYVVYINPKGDNK 612
++K NDRFEF +++ LD+FL++ P PA YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 418 QNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGK 477
Query: 613 STALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSK 672
WCKFDDDVVS+C+K
Sbjct: 478 ----------------------------------------------WCKFDDDVVSRCTK 491
Query: 673 DEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQE 723
+EA+ HN+GG+D+D L+V+H TNAYMLVYIRES+L+ VL+ VT+ DIPQ+
Sbjct: 492 EEAIEHNYGGHDDD--LSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQ 540
Score = 293 bits (750), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 148/245 (60%), Positives = 165/245 (67%), Gaps = 43/245 (17%)
Query: 56 DADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL----------- 104
D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 59 DMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGF 118
Query: 105 --------------------------------VRRRIQHLFFIKENDWGFSHFMTFSDLL 132
RRI HLFF +ENDWGFS+FM +S++
Sbjct: 119 FLQCNAESDSTSWSCHAQAVLKIINYRDDDKSFSRRISHLFFHEENDWGFSNFMAWSEVT 178
Query: 133 DPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQ 192
DP+KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMNSLLQTL+FTNQ
Sbjct: 179 DPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQ 238
Query: 193 LRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQ 252
LRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWETLDSFMQHDVQ
Sbjct: 239 LRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQ 298
Query: 253 EFLRV 257
E RV
Sbjct: 299 ELCRV 303
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 605 INPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHP 658
++P+ LP FDKD +V+ F K+Y+P+ + ++Y GH Y ++ I + P
Sbjct: 666 VDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLP 719
>sp|Q9VYQ8|UBP7_DROME Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosophila melanogaster
GN=Usp7 PE=1 SV=1
Length = 1129
Score = 609 bits (1571), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/468 (64%), Positives = 348/468 (74%), Gaps = 48/468 (10%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSR-RIQHLFFIKENDWGFSHFMTFSD 312
F CNGE +S WSC A AEL L KP +PF+R RI+HLF+ KEND+G+S+F+T+ +
Sbjct: 143 FFLQCNGENDSPTWSCNAIAELRLKCHKPDAQPFTRARIKHLFYSKENDYGYSNFITWQE 202
Query: 313 LLDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFT 372
L D +K ++ ++SI LEV V ADAPHGV WDSKKHTGYVGLKNQGATCYMNSLLQTLYFT
Sbjct: 203 LKDSEKSYVHNNSITLEVHVVADAPHGVLWDSKKHTGYVGLKNQGATCYMNSLLQTLYFT 262
Query: 373 NQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHD 432
N LR +VY++PTE+DDS+KSV L+LQRVFHELQF D+PVGTKKLTKSFGWETLDSFMQHD
Sbjct: 263 NSLRLSVYRIPTEADDSSKSVGLSLQRVFHELQFGDRPVGTKKLTKSFGWETLDSFMQHD 322
Query: 433 VQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVK 492
VQEFLRVLLDKLE KMKGT +EGT+P LFEGKM S+IKCK V+Y S+R ETFYDIQLN+K
Sbjct: 323 VQEFLRVLLDKLESKMKGTILEGTIPGLFEGKMSSYIKCKNVDYNSTRYETFYDIQLNIK 382
Query: 493 GKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVT 552
KK+I ESF+DY+ PE LEGDNKYDAGVHGLQ+A KGV F + PPVLHLHLMRFQYDPVT
Sbjct: 383 DKKNIYESFQDYVAPETLEGDNKYDAGVHGLQEASKGVIFTSFPPVLHLHLMRFQYDPVT 442
Query: 553 DCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNK 612
D S+K+NDRFEFY+ I LD +L E T A Y+LHAVLVHSGDNHGGHYVV+INPK D +
Sbjct: 443 DSSIKYNDRFEFYEHINLDRYLAESENTLADYVLHAVLVHSGDNHGGHYVVFINPKADGR 502
Query: 613 STALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSK 672
W KFDDDVVS C K
Sbjct: 503 ----------------------------------------------WFKFDDDVVSSCRK 516
Query: 673 DEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDI 720
EA+ N+GG D++ K S NAYMLVYIR+SEL VL D+TE +I
Sbjct: 517 QEAIEQNYGGMDDEISFHAKCS-NAYMLVYIRQSELDRVLGDITESEI 563
Score = 297 bits (761), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 179/399 (44%), Positives = 222/399 (55%), Gaps = 60/399 (15%)
Query: 10 GVEQRRSENGPYLADPRPSAYKKSHNFMFGNQEENATATNQDVEMNDADDEDRARSEVRF 69
V Q SENG P S + FG+ E + ++D ED+ RSE F
Sbjct: 56 AVTQLPSENGNM---PPQQLLADSSSTSFGDGEA--------MGIDDESKEDQFRSETTF 104
Query: 70 SFKVENIHNLKDTALSPPHYARNLPWKIMFM----------------------------- 100
SF VEN+ LK LSPP Y R LPW+IM +
Sbjct: 105 SFTVENVVQLKSQRLSPPVYVRMLPWRIMVIPNDRALGFFLQCNGENDSPTWSCNAIAEL 164
Query: 101 --------VKLLVRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQA 152
+ R RI+HLF+ KEND+G+S+F+T+ +L D +K ++ ++SI LEV V A
Sbjct: 165 RLKCHKPDAQPFTRARIKHLFYSKENDYGYSNFITWQELKDSEKSYVHNNSITLEVHVVA 224
Query: 153 DAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVA 212
DAPHGV WDSKKHTGYVGLKNQGATCYMNSLLQTLYFTN LR +VY++PTE+DDS+KSV
Sbjct: 225 DAPHGVLWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNSLRLSVYRIPTEADDSSKSVG 284
Query: 213 LALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESSAWSCYAS 272
L+LQRVFHELQF D+PVGTKKLTKSFGWETLDSFMQHDVQEFLRV + ES
Sbjct: 285 LSLQRVFHELQFGDRPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLESKMKGT--- 341
Query: 273 AELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 332
IL PG+ F ++ K D+ + + TF D+ + IKD I E
Sbjct: 342 ---ILEGTIPGL--FEGKMSSYIKCKNVDYNSTRYETFYDI----QLNIKDKKNIYESFQ 392
Query: 333 QADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYF 371
AP + D+K G GL+ S L+
Sbjct: 393 DYVAPETLEGDNKYDAGVHGLQEASKGVIFTSFPPVLHL 431
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 601 YVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
+V+++ + LPPF+ E L F K Y+PR K+++Y+G
Sbjct: 683 WVIWLQLAWTDVPGPLPPFNPKTESLLFLKYYDPRNKRLNYIG 725
>sp|Q60MK8|UBP7_CAEBR Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis briggsae
GN=usp-7 PE=3 SV=1
Length = 1129
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/481 (45%), Positives = 278/481 (57%), Gaps = 65/481 (13%)
Query: 254 FLRVCNGE---TESSAWSCYASAEL-ILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMT 309
F CN + + W CY A L +L P P ++I H F E DWGFS++
Sbjct: 90 FFLQCNNDDLLQKRGMWRCYGQATLEVLNANGP---PIQKKIHHSFHNTEVDWGFSNYDQ 146
Query: 310 FSDLLDPDKGFIKDDSIILEVCVQADAPHGVS--WDSKKHTGYVGLKNQGATCYMNSLLQ 367
+ L P G++ DD I L AD P G + WDSKKHTG +GL+NQGATCYMNS+LQ
Sbjct: 147 YDTLTSPKDGYVIDDVIRLRCRFTADVPTGANYMWDSKKHTGCIGLRNQGATCYMNSILQ 206
Query: 368 TLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDS 427
+ YFT R+AVY M ++ + ++ LA+QRVF+ELQ S + V T LT++FGW+ LD+
Sbjct: 207 SFYFTTGFRRAVYNMEVGTEPNESNIVLAMQRVFYELQMSSEAVETNSLTRAFGWDKLDA 266
Query: 428 FMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDI 487
F QHDVQEF RVLLD LE KMKGT E ++P LF G M S+IKC V+Y SSR E+FYD+
Sbjct: 267 FNQHDVQEFCRVLLDNLETKMKGTSEEKSIPNLFRGNMKSYIKCLDVDYESSRTESFYDV 326
Query: 488 QLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQ 547
QLNV G + +F Y PE L+ DNKYDAG HGLQ AEKGV F LPPVLH+ LMRFQ
Sbjct: 327 QLNVLGMDSLERAFDAYTTPETLDDDNKYDAGDHGLQRAEKGVKFVELPPVLHVQLMRFQ 386
Query: 548 YDPVTDCSV--KFNDRFEFYDRIELDDFLKEKGPT----PATYILHAVLVHSGDNHGGHY 601
Y C V K N+RF F +++ L + E GP Y LHAVLVHSG+ HGGHY
Sbjct: 387 Y-----CGVEQKINERFSFPEKMNLSNCC-ELGPMLNEEDCVYSLHAVLVHSGEFHGGHY 440
Query: 602 VVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCK 661
V YIN + +A+ P WCK
Sbjct: 441 VTYIN--VNLHESAVDP-----------------------------------TATAKWCK 463
Query: 662 FDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIP 721
FDDDVVS+ + D+A+ NFGG +++AYMLVY+R++ + VL + + IP
Sbjct: 464 FDDDVVSRTTTDDAIVSNFGGEK-------AMNSSAYMLVYVRDNAIDQVLAPIPDTQIP 516
Query: 722 Q 722
Q
Sbjct: 517 Q 517
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 106/155 (68%), Gaps = 2/155 (1%)
Query: 105 VRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVS--WDS 162
++++I H F E DWGFS++ + L P G++ DD I L AD P G + WDS
Sbjct: 124 IQKKIHHSFHNTEVDWGFSNYDQYDTLTSPKDGYVIDDVIRLRCRFTADVPTGANYMWDS 183
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 222
KKHTG +GL+NQGATCYMNS+LQ+ YFT R+AVY M ++ + ++ LA+QRVF+EL
Sbjct: 184 KKHTGCIGLRNQGATCYMNSILQSFYFTTGFRRAVYNMEVGTEPNESNIVLAMQRVFYEL 243
Query: 223 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
Q S + V T LT++FGW+ LD+F QHDVQEF RV
Sbjct: 244 QMSSEAVETNSLTRAFGWDKLDAFNQHDVQEFCRV 278
>sp|Q7JKC3|UBP7_CAEEL Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis elegans
GN=usp-7 PE=2 SV=1
Length = 1135
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/480 (44%), Positives = 282/480 (58%), Gaps = 64/480 (13%)
Query: 254 FLRVCNGE--TESSAWSCYASAEL-ILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTF 310
FL+ N E + W CY +A L +L P ++ ++I H F E DWGFS++ +
Sbjct: 94 FLQCNNDELLQKRGMWRCYGTAVLEVLNADGPSIQ---KKIHHSFHNTEVDWGFSNYDQY 150
Query: 311 SDLLDPDKGFIKDDSIILEVCVQADAPHGVS--WDSKKHTGYVGLKNQGATCYMNSLLQT 368
L +P G++ +D+I L AD P G + WDSK+HTG +GL+NQGATCYMNS+LQ+
Sbjct: 151 DTLCNPKDGYVVNDTIKLRCRFTADVPTGANYMWDSKRHTGCIGLRNQGATCYMNSILQS 210
Query: 369 LYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSF 428
YFT R+AVY M ++ + ++ LA+QRVF+ELQ + + V T LT++FGW+ LD+F
Sbjct: 211 FYFTTGFRRAVYNMDVGTEPNESNIVLAMQRVFYELQMASEAVETNSLTRAFGWDKLDAF 270
Query: 429 MQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQ 488
QHDVQEF RVLLD LE KMKGT E ++P LF G M S+IKC V+Y SSR E+FYD+Q
Sbjct: 271 NQHDVQEFCRVLLDNLETKMKGTSEEKSIPNLFRGNMKSYIKCLDVDYESSRTESFYDVQ 330
Query: 489 LNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQY 548
LNV G + +F+ Y E+L+ +NKYDAG HGLQ AEKGV F LPP+LH+ LMRFQY
Sbjct: 331 LNVLGMDSLERAFEAYTTSEILDDENKYDAGDHGLQRAEKGVKFVELPPILHVQLMRFQY 390
Query: 549 DPVTDCSV--KFNDRFEFYDRIELDDFLKEKGPT----PATYILHAVLVHSGDNHGGHYV 602
C V K N+RF F +++ L E GP Y LHAVLVHSG+ HGGHYV
Sbjct: 391 -----CGVEQKINERFSFPEKMNLASCC-ELGPMLTEEDCVYSLHAVLVHSGEFHGGHYV 444
Query: 603 VYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKF 662
YIN L + + T S WCKF
Sbjct: 445 TYINVN---------------------------------LHESAVDPTSSA----KWCKF 467
Query: 663 DDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQ 722
DDDVVS+ + D+A+ NFGG +++AYMLVY+R++ + L + + IPQ
Sbjct: 468 DDDVVSRTTTDDAIVSNFGGEK-------TMNSSAYMLVYVRDNAIDQFLAPIPDSQIPQ 520
Score = 170 bits (430), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 108/155 (69%), Gaps = 2/155 (1%)
Query: 105 VRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVS--WDS 162
++++I H F E DWGFS++ + L +P G++ +D+I L AD P G + WDS
Sbjct: 127 IQKKIHHSFHNTEVDWGFSNYDQYDTLCNPKDGYVVNDTIKLRCRFTADVPTGANYMWDS 186
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 222
K+HTG +GL+NQGATCYMNS+LQ+ YFT R+AVY M ++ + ++ LA+QRVF+EL
Sbjct: 187 KRHTGCIGLRNQGATCYMNSILQSFYFTTGFRRAVYNMDVGTEPNESNIVLAMQRVFYEL 246
Query: 223 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
Q + + V T LT++FGW+ LD+F QHDVQEF RV
Sbjct: 247 QMASEAVETNSLTRAFGWDKLDAFNQHDVQEFCRV 281
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/494 (43%), Positives = 288/494 (58%), Gaps = 70/494 (14%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
+L V + + WS YA L +V Q + QH F +E+DWGF+ FM S+L
Sbjct: 101 YLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSEL 160
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGV-SWDSKKHTGYVGLKNQGATCYMNSLLQTLYFT 372
DP +G++ +D++++E V S+DSKK TG+VGLKNQGATCYMNSLLQTLY
Sbjct: 161 YDPSRGYLVNDTVLVEAEVAVRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHI 220
Query: 373 NQLRKAVYKMPT-ESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQH 431
RKAVY MPT E+D S+ LALQ +F++LQ++D V TK+LTKSFGW+T DSFMQH
Sbjct: 221 PYFRKAVYHMPTTENDAPTASIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQH 280
Query: 432 DVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNV 491
DVQE RVL +KLE KMKGT VEGT+ +LFEG +++I+C V++ S+R E+FYD+QL+V
Sbjct: 281 DVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDV 340
Query: 492 KGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPV 551
KG KD+ SF Y+E E LEGDNKY A HGLQDA+KGV F + PPVL L L RF+YD +
Sbjct: 341 KGCKDVYASFDKYVEVERLEGDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFM 400
Query: 552 TDCSVKFNDRFEFYDRIELDDFLKEKGP--TPAT-------YILHAVLVHSGDNHGGHYV 602
D VK NDR+EF ++LD +E G +P Y LH+VLVHSG HGGHY
Sbjct: 401 RDTMVKINDRYEFPLELDLD---REDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYY 457
Query: 603 VYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKF 662
+I P ++ W KF
Sbjct: 458 AFIRPTLSDQ----------------------------------------------WYKF 471
Query: 663 DDDVVSKCSKDEAVAHNFGGNDE----------DSGLTVKHSTNAYMLVYIRESELANVL 712
DD+ V+K A+ +GG +E + +NAYMLVYIRES+ ++
Sbjct: 472 DDERVTKEDLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKII 531
Query: 713 EDVTERDIPQEDKI 726
+V E+DI + ++
Sbjct: 532 CNVDEKDIAEHLRV 545
Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 114/159 (71%), Gaps = 2/159 (1%)
Query: 101 VKLLVRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGV-S 159
+ VR+ QH F +E+DWGF+ FM S+L DP +G++ +D++++E V S
Sbjct: 130 TRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRKVLDYWS 189
Query: 160 WDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP-TESDDSNKSVALALQRV 218
+DSKK TG+VGLKNQGATCYMNSLLQTLY RKAVY MP TE+D S+ LALQ +
Sbjct: 190 YDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSL 249
Query: 219 FHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
F++LQ++D V TK+LTKSFGW+T DSFMQHDVQE RV
Sbjct: 250 FYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRV 288
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 215/493 (43%), Positives = 285/493 (57%), Gaps = 69/493 (13%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
+L V + WS Y+ L +V Q + QH F +E+DWGF+ FM S+L
Sbjct: 100 YLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSEL 159
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGV-SWDSKKHTGYVGLKNQGATCYMNSLLQTLYFT 372
+P +G++ +D++++E V S+DSKK TG+VGLKNQGATCYMNSLLQTLY
Sbjct: 160 YEPTRGYLVNDTVLIEAEVAVRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHI 219
Query: 373 NQLRKAVYKMPT-ESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQH 431
RKAVY MPT E+D S+ LALQ +F++LQ++D V TK+LTKSFGW+T DSFMQH
Sbjct: 220 PYFRKAVYHMPTTENDAPTASIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQH 279
Query: 432 DVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNV 491
DVQE RVL +KLE KMKGT VEGT+ KLFEG +++I+C V+Y S+R E+FYD+QL+V
Sbjct: 280 DVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDV 339
Query: 492 KGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPV 551
KG KD+ SF Y+E E LEGDNKY A H LQDA+KGV F + PPVL L L RF+YD +
Sbjct: 340 KGCKDVYASFDKYVEVERLEGDNKYHAEGHDLQDAKKGVLFIDFPPVLQLQLKRFEYDFM 399
Query: 552 TDCSVKFNDRFEFYDRIELDDFLKEKG---------PTPATYILHAVLVHSGDNHGGHYV 602
D VK NDR+EF +++LD +E G Y LH+VLVHSG HGGHY
Sbjct: 400 RDTMVKINDRYEFPLQLDLD---REDGRYLSPDADKSVRNLYTLHSVLVHSGGVHGGHYY 456
Query: 603 VYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKF 662
+I P ++ W KF
Sbjct: 457 AFIRPTLSDQ----------------------------------------------WYKF 470
Query: 663 DDDVVSKCSKDEAVAHNFGGNDE---------DSGLTVKHSTNAYMLVYIRESELANVLE 713
DD+ V+K A+ +GG +E + +NAYMLVYIRES+ ++
Sbjct: 471 DDERVTKEDVKRALEEQYGGEEELPQNNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIIC 530
Query: 714 DVTERDIPQEDKI 726
+V E+DI + ++
Sbjct: 531 NVDEKDIAEHLRV 543
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 113/155 (72%), Gaps = 2/155 (1%)
Query: 105 VRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGV-SWDSK 163
+R+ QH F +E+DWGF+ FM S+L +P +G++ +D++++E V S+DSK
Sbjct: 133 IRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRKVLDYWSYDSK 192
Query: 164 KHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP-TESDDSNKSVALALQRVFHEL 222
K TG+VGLKNQGATCYMNSLLQTLY RKAVY MP TE+D S+ LALQ +F++L
Sbjct: 193 KETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKL 252
Query: 223 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
Q++D V TK+LTKSFGW+T DSFMQHDVQE RV
Sbjct: 253 QYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRV 287
>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2
Length = 1129
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 219/484 (45%), Positives = 273/484 (56%), Gaps = 70/484 (14%)
Query: 257 VCNGETESSAWSCYASAELILVP-QKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLD 315
+ N ET +SC A L L Q P V + H F + DWGF+ F+ +
Sbjct: 129 IVNDET----YSCCAQFALSLSNVQDPTVMQINTS-HHRFRSEVKDWGFTRFVDLRKIAV 183
Query: 316 PDK----GFIKDDSIILEVCVQA-DAPHGVSW------DSKKHTGYVGLKNQGATCYMNS 364
P F+++D I + V V+ P GV W +SKK TGYVGLKNQGATCYMNS
Sbjct: 184 PTPEFPVPFLENDEICISVTVRVLQDPTGVLWHSFVNYNSKKETGYVGLKNQGATCYMNS 243
Query: 365 LLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWET 424
LLQ+L+FTN RK VYK+PT++DDS SVA ALQRVF+ L+ +PV T +LT+SFGW +
Sbjct: 244 LLQSLFFTNIFRKTVYKIPTDNDDSRDSVAYALQRVFYNLEKQREPVSTTELTRSFGWNS 303
Query: 425 LDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETF 484
DSFMQHD+QEF RVL D LE KMKGT VE + +F GKM S++KC VNY SSR E F
Sbjct: 304 FDSFMQHDIQEFNRVLQDNLEKKMKGTEVENALNDIFVGKMKSYVKCIDVNYESSRVEDF 363
Query: 485 YDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLM 544
+DIQLNVKG + +SF+D I+ E L GDNKY A HGLQDA KG+ FE+LP VL L L
Sbjct: 364 WDIQLNVKGMDTLEDSFRDAIQVETLTGDNKYYAEGHGLQDAHKGIIFESLPNVLQLQLK 423
Query: 545 RFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPAT--YILHAVLVHSGDNHGGHYV 602
RF YD + D VK NDR EF I+L+ +L E + Y+LH VLVH GD HGGHY
Sbjct: 424 RFDYDMLRDMMVKINDRHEFPLEIDLEPYLSETADKSESHVYVLHGVLVHGGDLHGGHYY 483
Query: 603 VYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKF 662
I P+ D+ W KF
Sbjct: 484 ALIKPEKDSN----------------------------------------------WFKF 497
Query: 663 DDDVVSKCSKDEAVAHNFGGNDED-----SGLTVKHSTNAYMLVYIRESELANVLEDVTE 717
DDD V++ + E + N+GG +G K NAYMLVY R+S L ++L VT
Sbjct: 498 DDDRVTRATIKEVLEDNYGGEPAGRAKGYNGNPFKRFMNAYMLVYFRKSRLDHILSPVTA 557
Query: 718 RDIP 721
D+P
Sbjct: 558 EDVP 561
Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 108/165 (65%), Gaps = 11/165 (6%)
Query: 110 QHLFFIKENDWGFSHFMTFSDLLDPDK----GFIKDDSIILEVCVQA-DAPHGVSW---- 160
H F + DWGF+ F+ + P F+++D I + V V+ P GV W
Sbjct: 160 HHRFRSEVKDWGFTRFVDLRKIAVPTPEFPVPFLENDEICISVTVRVLQDPTGVLWHSFV 219
Query: 161 --DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRV 218
+SKK TGYVGLKNQGATCYMNSLLQ+L+FTN RK VYK+PT++DDS SVA ALQRV
Sbjct: 220 NYNSKKETGYVGLKNQGATCYMNSLLQSLFFTNIFRKTVYKIPTDNDDSRDSVAYALQRV 279
Query: 219 FHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETE 263
F+ L+ +PV T +LT+SFGW + DSFMQHD+QEF RV E
Sbjct: 280 FYNLEKQREPVSTTELTRSFGWNSFDSFMQHDIQEFNRVLQDNLE 324
>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1
SV=1
Length = 1230
Score = 343 bits (880), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 200/514 (38%), Positives = 280/514 (54%), Gaps = 83/514 (16%)
Query: 246 FMQHDVQEFLRVCNGETESSAWSCYASAELILVPQKPG---VEPFSRRIQHLFFIKENDW 302
+++ +E L GE Y A+ + +PG + H F + DW
Sbjct: 86 YLEPHPEEKLDETTGEMVPVDPDWYCCAQFAIGISRPGNGDTINLINKSHHRFNALDTDW 145
Query: 303 GFSHFMTFSDLLDPDKG----FIKDDSIILEVCVQA-DAPHGVSW------DSKKHTGYV 351
GF++ + ++L P KG F+ + ++ + V+ P GV W DSKK TGYV
Sbjct: 146 GFANLIDLNNLKHPSKGRPLSFLNEGTLNITAYVRILKDPTGVLWHNFLNYDSKKVTGYV 205
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 411
G +NQGATCY+NSLLQ+ +FT RK VY++PTE + N SV LALQR F++LQ SD P+
Sbjct: 206 GFRNQGATCYLNSLLQSYFFTKYFRKLVYEIPTEHESPNNSVPLALQRAFYQLQVSDIPL 265
Query: 412 GTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKC 471
T +LT+SFGW+T +SF QHDVQE R+L+D+LE MKGT VEG + ++F GKM S+IKC
Sbjct: 266 DTLELTRSFGWDTAESFTQHDVQELNRILMDRLENNMKGTPVEGKLNEIFVGKMKSYIKC 325
Query: 472 KKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVT 531
V+Y S+R E F+D+QLNVK K++ ESF +YIE E++ G+N+Y A +GLQDA+KGV
Sbjct: 326 INVDYESARVEDFWDLQLNVKNFKNLQESFDNYIEMELMNGENQYAAQDYGLQDAQKGVI 385
Query: 532 FENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFL-----------KEKGPT 580
FE+ PPVLHL L RF+YD D VK ND++EF + I+L F+ + K
Sbjct: 386 FESFPPVLHLQLKRFEYDFNYDQMVKVNDKYEFPETIDLSPFVDKDVLKKTLDSENKDKN 445
Query: 581 PATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQIS 640
P Y LH VLVHSGD GHY I P +++
Sbjct: 446 PYVYNLHGVLVHSGDISTGHYYTLIKPGVEDQ---------------------------- 477
Query: 641 YLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGN------------DEDSG 688
W +FDD+ V + +K + NFG + E
Sbjct: 478 ------------------WYRFDDERVWRVTKKQVFQENFGCDRLPDEKVRTMTRGEYQN 519
Query: 689 LTVKHSTNAYMLVYIRESELANVLEDVTERDIPQ 722
++ T+AYMLVYIR+ + ++L V E D+P+
Sbjct: 520 YIIQRHTSAYMLVYIRQEQEEDLLRPVLESDVPK 553
Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 107/166 (64%), Gaps = 11/166 (6%)
Query: 111 HLFFIKENDWGFSHFMTFSDLLDPDKG----FIKDDSIILEVCVQA-DAPHGVSW----- 160
H F + DWGF++ + ++L P KG F+ + ++ + V+ P GV W
Sbjct: 136 HRFNALDTDWGFANLIDLNNLKHPSKGRPLSFLNEGTLNITAYVRILKDPTGVLWHNFLN 195
Query: 161 -DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVF 219
DSKK TGYVG +NQGATCY+NSLLQ+ +FT RK VY++PTE + N SV LALQR F
Sbjct: 196 YDSKKVTGYVGFRNQGATCYLNSLLQSYFFTKYFRKLVYEIPTEHESPNNSVPLALQRAF 255
Query: 220 HELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESS 265
++LQ SD P+ T +LT+SFGW+T +SF QHDVQE R+ E++
Sbjct: 256 YQLQVSDIPLDTLELTRSFGWDTAESFTQHDVQELNRILMDRLENN 301
>sp|Q09879|UBP5_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp5 PE=3 SV=3
Length = 1108
Score = 335 bits (859), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 196/476 (41%), Positives = 266/476 (55%), Gaps = 67/476 (14%)
Query: 269 CYASAELILVPQKPGVEPFSRRIQHLFFIKE-NDWGFSHFMTFSDLL---DPD-KGFIKD 323
C A +I P+KP + + H F E DWGF+ F LL PD ++D
Sbjct: 121 CCQFAFVISNPRKPSLSVANS--AHCRFSPEIVDWGFTQFAELKKLLCRQAPDVPPIVED 178
Query: 324 DSIILEVCVQA-DAPHGVSW------DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLR 376
+++L V+ P GV W DSK TGYVGLKNQGATCYMNSLLQ+LY + R
Sbjct: 179 GALLLTAYVRILKDPTGVLWHSFNDYDSKIATGYVGLKNQGATCYMNSLLQSLYIIHAFR 238
Query: 377 KAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEF 436
+ VY++PT+S S+A ALQR F+ LQF ++PV T +LTKSFGW++LDSFMQHDVQEF
Sbjct: 239 RIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNEPVSTTELTKSFGWDSLDSFMQHDVQEF 298
Query: 437 LRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKD 496
RVL D LE M+ T VE + LF GKM S+I C VN+ S+R+E ++DIQLNVKG K+
Sbjct: 299 NRVLQDNLERSMRDTKVENALTNLFVGKMKSYIACVNVNFESARSEDYWDIQLNVKGMKN 358
Query: 497 ILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSV 556
+ +SF+ YI+ E LEGDN Y A +G Q+A+KGV FE+ PP+LHL L RF+YD D +
Sbjct: 359 LEDSFRSYIQVETLEGDNCYFADTYGFQEAKKGVIFESFPPILHLQLKRFEYDFERDMMI 418
Query: 557 KFNDRFEFYDRIELDDFLKEKGPTP--ATYILHAVLVHSGDNHGGHYVVYINPKGDNKST 614
K NDR+EF + FL + Y+L+ VLVHSGD H GHY + + D
Sbjct: 419 KINDRYEFPLEFDAKAFLSPEADQSQNCEYVLYGVLVHSGDLHNGHYYALLKTEKDG--- 475
Query: 615 ALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDE 674
PW K+DD V++ + E
Sbjct: 476 -------------------------------------------PWYKYDDTRVTRATLRE 492
Query: 675 AVAHNFGGN-----DEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQEDK 725
+ N+GG+ S + +K +AYML+Y+R+ +L ++ V+ +IP+ K
Sbjct: 493 VLEENYGGDYIMHPPFRSPVKLKRFMSAYMLLYLRKDKLDELMNPVSADEIPEHLK 548
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 103/158 (65%), Gaps = 11/158 (6%)
Query: 119 DWGFSHFMTFSDLL---DPD-KGFIKDDSIILEVCVQA-DAPHGVSW------DSKKHTG 167
DWGF+ F LL PD ++D +++L V+ P GV W DSK TG
Sbjct: 152 DWGFTQFAELKKLLCRQAPDVPPIVEDGALLLTAYVRILKDPTGVLWHSFNDYDSKIATG 211
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
YVGLKNQGATCYMNSLLQ+LY + R+ VY++PT+S S+A ALQR F+ LQF ++
Sbjct: 212 YVGLKNQGATCYMNSLLQSLYIIHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNE 271
Query: 228 PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESS 265
PV T +LTKSFGW++LDSFMQHDVQEF RV E S
Sbjct: 272 PVSTTELTKSFGWDSLDSFMQHDVQEFNRVLQDNLERS 309
>sp|Q24574|UBPE_DROME Ubiquitin carboxyl-terminal hydrolase 64E OS=Drosophila
melanogaster GN=Ubp64E PE=1 SV=2
Length = 1556
Score = 179 bits (454), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 140/238 (58%), Gaps = 8/238 (3%)
Query: 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSD 408
GYVGL NQ TCY+NSLLQ L+ T + R A+Y+ ++D+ K++ LQ++F LQ S
Sbjct: 394 GYVGLVNQAMTCYLNSLLQALFMTPEFRNALYRWEFDNDNEAKNIPYQLQKLFLNLQTSP 453
Query: 409 KP-VGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMIS 467
K V T LT+SFGW++ +++ QHD+QE RV+ D LE K K T + L+EGKM
Sbjct: 454 KAAVETTDLTRSFGWDSTEAWQQHDIQELCRVMFDALEHKFKNTKQANLISNLYEGKMND 513
Query: 468 FIKCKKVNYTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDNKYDA-GV 520
++KC + N +R +TF DI L V+ I E+ + +++PE L+G+N+Y
Sbjct: 514 YVKCLECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEALRAFVQPETLDGNNQYLCEKC 573
Query: 521 HGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKG 578
DA KG+ F++ P +L LHL RF +D T +K NDR F + L+ F+ G
Sbjct: 574 KKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSG 631
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Query: 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSD 226
GYVGL NQ TCY+NSLLQ L+ T + R A+Y+ ++D+ K++ LQ++F LQ S
Sbjct: 394 GYVGLVNQAMTCYLNSLLQALFMTPEFRNALYRWEFDNDNEAKNIPYQLQKLFLNLQTSP 453
Query: 227 K-PVGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
K V T LT+SFGW++ +++ QHD+QE RV
Sbjct: 454 KAAVETTDLTRSFGWDSTEAWQQHDIQELCRV 485
Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 558 FNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYI 605
ND E D ++G P Y L A+++HSG GGHY YI
Sbjct: 678 LNDEDEGIDMSSSTSKSAKQGSGPYLYELFAIMIHSGSASGGHYYAYI 725
>sp|A1A5G2|UBP47_XENTR Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus tropicalis
GN=usp47 PE=2 SV=1
Length = 1354
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 193/381 (50%), Gaps = 31/381 (8%)
Query: 348 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES--DDSNKSVALALQRVFHELQ 405
TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F LQ
Sbjct: 171 TGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVSSIPYQLQRLFVLLQ 230
Query: 406 FSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGK 464
S K + T +T+SFGW++ +++ QHDVQE RV+ D LE K K T + +L++GK
Sbjct: 231 TSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQGK 290
Query: 465 MISFIKCKKVNYTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDNKYDA 518
+ ++KC + Y S R +TF DI L ++ + E+ + +I+PE L+G N+Y
Sbjct: 291 LKDYVKCLECGYESWRIDTFLDIPLVIRPFGSNTAFGSMEEALQAFIQPETLDGPNQYFC 350
Query: 519 GVHGLQ-DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLK-E 576
+ DA KG+ F + P +L L L RF +D + +K NDR F D +++ F+ E
Sbjct: 351 ERCKRKCDARKGLKFLHFPYLLTLQLKRFDFDYTSMHRIKLNDRMTFPDELDMSPFIDVE 410
Query: 577 KGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDN-----------KSTALPPFDKD-AE 624
+P T + +N G + ++ ++ + +K +E
Sbjct: 411 DEKSPQT---DSCTDSGAENEGSCHSDQMSNDFSTDDAVDEGICLETNSNIEKLNKSVSE 467
Query: 625 VLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGND 684
++L+ S G Y +S + W F+D VS+ ++ E + +GG+
Sbjct: 468 KNSLYELFSVMVHSGSAAGGHYYACIKSFADGQ-WYSFNDQHVSRITQ-EDIKKTYGGST 525
Query: 685 EDSGL---TVKHSTNAYMLVY 702
+ G STNAYML+Y
Sbjct: 526 GNRGYYSSAFASSTNAYMLMY 546
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SDDSNKSVALALQRVFHELQ 223
TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F LQ
Sbjct: 171 TGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVSSIPYQLQRLFVLLQ 230
Query: 224 FSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESSAWSCYASAELI 276
S K + T +T+SFGW++ +++ QHDVQE RV E W A+LI
Sbjct: 231 TSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQK-WKQTEQADLI 283
>sp|Q5U252|UBP47_XENLA Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus laevis GN=usp47
PE=2 SV=1
Length = 1350
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 191/381 (50%), Gaps = 31/381 (8%)
Query: 348 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES--DDSNKSVALALQRVFHELQ 405
TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F LQ
Sbjct: 170 TGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVSSIPYQLQRLFVLLQ 229
Query: 406 FSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGK 464
S K + T +T+SFGW++ +++ QHDVQE RV+ D LE K K T + +L++GK
Sbjct: 230 TSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQGK 289
Query: 465 MISFIKCKKVNYTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDNKYDA 518
+ ++KC + Y S R +TF DI L ++ + E+ +I+PE L+G N+Y
Sbjct: 290 LKDYVKCLECGYESWRIDTFLDIPLVIRPYGSNTAFGSMEEALHAFIQPETLDGPNQYFC 349
Query: 519 GVHGLQ-DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLK-E 576
+ DA KG+ F + P +L L L RF +D + +K NDR F D +++ F+ E
Sbjct: 350 ERCKRKCDARKGLKFLHFPYLLTLQLKRFDFDYTSMHRIKLNDRMTFPDELDMSPFIDME 409
Query: 577 KGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDN-----------KSTALPPFDKD-AE 624
+P T + +N G + ++ ++ + +K AE
Sbjct: 410 DEKSPQT---DSCTDSGAENEGSCHSDQMSNDFSTDDAVDEGICLETNSNIEKLNKSVAE 466
Query: 625 VLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGND 684
++L+ S G Y +S + W F+D VS+ ++ E + +GG
Sbjct: 467 KNSLYELFSVMVHSGSAAGGHYYACIKSFADGQ-WYSFNDQHVSRITQ-EDIKKTYGGAT 524
Query: 685 EDSGL---TVKHSTNAYMLVY 702
+ G STNAYML+Y
Sbjct: 525 GNRGYYSSAFASSTNAYMLMY 545
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SDDSNKSVALALQRVFHELQ 223
TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F LQ
Sbjct: 170 TGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVSSIPYQLQRLFVLLQ 229
Query: 224 FSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESSAWSCYASAELI 276
S K + T +T+SFGW++ +++ QHDVQE RV E W A+LI
Sbjct: 230 TSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQK-WKQTEQADLI 282
>sp|Q8BY87|UBP47_MOUSE Ubiquitin carboxyl-terminal hydrolase 47 OS=Mus musculus GN=Usp47
PE=1 SV=2
Length = 1376
Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 190/388 (48%), Gaps = 36/388 (9%)
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SDDSNKSVALALQRVF 401
+K TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F
Sbjct: 181 NKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEDSEEDPVTSIPYQLQRLF 240
Query: 402 HELQFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKL 460
LQ S K + T +T+SFGW++ +++ QHDVQE RV+ D LE K K T + +L
Sbjct: 241 VLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINEL 300
Query: 461 FEGKMISFIKCKKVNYTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDN 514
++GK+ +++C + Y R +T+ DI L ++ + E+ +I+PE+L+G N
Sbjct: 301 YQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEALHAFIQPEILDGPN 360
Query: 515 KYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDF 573
+Y DA KG+ F + P +L L L RF +D T +K NDR F + +++ F
Sbjct: 361 QYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMSFPEELDMSTF 420
Query: 574 LK-EKGPTPATYILHAVLVHSGDNHGGHYV----------------VYINPKGDNKSTAL 616
+ E +P T + +N G + + + ++ +
Sbjct: 421 IDIEDEKSPQT---ESCTDSGAENEGSCHSDQMSNDFSTDDAVDEGICLESSSGSEKISK 477
Query: 617 PPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDE-- 674
P +K++ ++L+ S G Y +S + W F+D VS+ ++++
Sbjct: 478 PGLEKNS---LMYELFSVMVHSGSAAGGHYYACIKSFSD-DQWYSFNDQHVSRITQEDIK 533
Query: 675 AVAHNFGGNDEDSGLTVKHSTNAYMLVY 702
G+ STNAYML+Y
Sbjct: 534 KTHGGSSGSRGYYSSAFASSTNAYMLIY 561
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 4/118 (3%)
Query: 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SDDSNKSVALALQRVF 219
+K TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F
Sbjct: 181 NKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEDSEEDPVTSIPYQLQRLF 240
Query: 220 HELQFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESSAWSCYASAELI 276
LQ S K + T +T+SFGW++ +++ QHDVQE RV E W A+LI
Sbjct: 241 VLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQK-WKQTEQADLI 297
>sp|Q96K76|UBP47_HUMAN Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens GN=USP47
PE=1 SV=3
Length = 1375
Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 188/385 (48%), Gaps = 30/385 (7%)
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES--DDSNKSVALALQRVF 401
+K TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F
Sbjct: 181 NKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVTSIPYQLQRLF 240
Query: 402 HELQFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKL 460
LQ S K + T +T+SFGW++ +++ QHDVQE RV+ D LE K K T + +L
Sbjct: 241 VLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINEL 300
Query: 461 FEGKMISFIKCKKVNYTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDN 514
++GK+ +++C + Y R +T+ DI L ++ + E+ +I+PE+L+G N
Sbjct: 301 YQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEALHAFIQPEILDGPN 360
Query: 515 KYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDF 573
+Y DA KG+ F + P +L L L RF +D T +K NDR F + +++ F
Sbjct: 361 QYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSTF 420
Query: 574 L---KEKGPTPATYILHAV----LVHS-------GDNHGGHYVVYINPKGDNKSTALPPF 619
+ EK P + HS ++ G + + + +
Sbjct: 421 IDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFSNDDGVDEGICLETNSGTEKISKSGL 480
Query: 620 DKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDE--AVA 677
+K++ ++L+ S G Y +S + W F+D VS+ ++++
Sbjct: 481 EKNS---LIYELFSVMVHSGSAAGGHYYACIKSFSD-EQWYSFNDQHVSRITQEDIKKTH 536
Query: 678 HNFGGNDEDSGLTVKHSTNAYMLVY 702
G+ STNAYML+Y
Sbjct: 537 GGSSGSRGYYSSAFASSTNAYMLIY 561
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 4/118 (3%)
Query: 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SDDSNKSVALALQRVF 219
+K TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F
Sbjct: 181 NKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVTSIPYQLQRLF 240
Query: 220 HELQFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESSAWSCYASAELI 276
LQ S K + T +T+SFGW++ +++ QHDVQE RV E W A+LI
Sbjct: 241 VLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQK-WKQTEQADLI 297
>sp|E1C1R4|UBP47_CHICK Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus GN=USP47
PE=3 SV=1
Length = 1375
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 189/382 (49%), Gaps = 30/382 (7%)
Query: 347 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES--DDSNKSVALALQRVFHEL 404
TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F L
Sbjct: 183 ETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVTSIPYQLQRLFVLL 242
Query: 405 QFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEG 463
Q S K + T +T+SFGW++ +++ QHDVQE RV+ D LE K K T + +L++G
Sbjct: 243 QTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQG 302
Query: 464 KMISFIKCKKVNYTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDNKYD 517
K+ +++C + Y R +T+ DI L ++ + E+ +I+PE+L+G N+Y
Sbjct: 303 KLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSNQAFASVEEALHAFIQPEILDGPNQYF 362
Query: 518 A-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLK- 575
DA KG+ F + P +L L L RF +D T +K NDR F + +++ F+
Sbjct: 363 CERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSIFIDV 422
Query: 576 EKGPTPATYILHAVLVHSGDNHGGHYV-----VYINPKGDNKSTAL---PPFDKDAEV-- 625
E +P T + +N G + + N G ++ L ++ A+V
Sbjct: 423 EDEKSPQT---ESCTDSGAENEGSCHSDQMSNDFSNDDGVDEGICLESNSAAERIAKVGS 479
Query: 626 ---LFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDE--AVAHNF 680
++L+ S G Y +S + W F+D VSK ++++
Sbjct: 480 EKNSLLYELFSVMVHSGSAAGGHYYACIKSFSD-DQWYSFNDQHVSKITQEDIKKTYGGS 538
Query: 681 GGNDEDSGLTVKHSTNAYMLVY 702
G+ STNAYML+Y
Sbjct: 539 SGSRGYYSSAFASSTNAYMLIY 560
Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 165 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SDDSNKSVALALQRVFHEL 222
TGYVGL NQ TCY+NSLLQTL+ T + R A+YK E +D S+ LQR+F L
Sbjct: 183 ETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPVTSIPYQLQRLFVLL 242
Query: 223 QFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESSAWSCYASAELI 276
Q S K + T +T+SFGW++ +++ QHDVQE RV E W A+LI
Sbjct: 243 QTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQK-WKQTEQADLI 296
>sp|Q9NVE5|UBP40_HUMAN Ubiquitin carboxyl-terminal hydrolase 40 OS=Homo sapiens GN=USP40
PE=2 SV=3
Length = 1235
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 144/278 (51%), Gaps = 19/278 (6%)
Query: 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES----------DDSNKSVA 394
++ T G++NQG TCY+NSLLQTL+FT + R+A++ + E D + +
Sbjct: 35 REFTNLSGIRNQGGTCYLNSLLQTLHFTPEFREALFSLGPEELGLFEDKDKPDAKVRIIP 94
Query: 395 LALQRVFHELQFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCV 453
L LQR+F +L D+ T LT SFGW + + QHDVQE R+L LE + GT
Sbjct: 95 LQLQRLFAQLLLLDQEAASTADLTDSFGWTSNEEMRQHDVQELNRILFSALETSLVGTSG 154
Query: 454 EGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQL---NVKGKKDILESFKDYIEPEVL 510
+ +L+ G +++ I CK+ S R E F D+ + NV G +D L + Y+E EV
Sbjct: 155 HDLIYRLYHGTIVNQIVCKECKNVSERQEDFLDLTVAVKNVSGLEDAL--WNMYVEEEVF 212
Query: 511 EGDNKYDAGV-HGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIE 569
+ DN Y G L A K LPP L + L+RF +D V K + F RI
Sbjct: 213 DCDNLYHCGTCDRLVKAAKSAKLRKLPPFLTVSLLRFNFDFVKCERYKETSCYTFPLRIN 272
Query: 570 LDDFLKEKGPTPATYI--LHAVLVHSGDNHGGHYVVYI 605
L F ++ YI L +V++H G +GGHY VYI
Sbjct: 273 LKPFCEQSELDDLEYIYDLFSVIIHKGGCYGGHYHVYI 310
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 11/114 (9%)
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES----------DDSNKSVA 212
++ T G++NQG TCY+NSLLQTL+FT + R+A++ + E D + +
Sbjct: 35 REFTNLSGIRNQGGTCYLNSLLQTLHFTPEFREALFSLGPEELGLFEDKDKPDAKVRIIP 94
Query: 213 LALQRVFHELQFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESS 265
L LQR+F +L D+ T LT SFGW + + QHDVQE R+ E+S
Sbjct: 95 LQLQRLFAQLLLLDQEAASTADLTDSFGWTSNEEMRQHDVQELNRILFSALETS 148
>sp|Q8BWR4|UBP40_MOUSE Ubiquitin carboxyl-terminal hydrolase 40 OS=Mus musculus GN=Usp40
PE=1 SV=2
Length = 1235
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 143/278 (51%), Gaps = 19/278 (6%)
Query: 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES----------DDSNKSVA 394
++ T G++NQG TCY++SLLQTL+FT + R+A++ + E D + +
Sbjct: 35 REFTNLSGIRNQGGTCYLSSLLQTLHFTPEFREALFSLGPEELGSLEDKDKPDAKVRIIP 94
Query: 395 LALQRVFHELQFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCV 453
L LQR+F +L D+ T LT SFGW + QHDVQE R+L LE + GT
Sbjct: 95 LQLQRLFAQLLLLDQEAASTIDLTDSFGWTNDEEMRQHDVQELNRILFSALETSLVGTSG 154
Query: 454 EGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQL---NVKGKKDILESFKDYIEPEVL 510
+ +L+ G +++ I CK+ S R E F D+ + NV G +D L + Y+E E+
Sbjct: 155 HDLIHRLYHGTIVNQIVCKECKNISERQEDFLDLTVAVKNVSGLEDELCNM--YVEEEIF 212
Query: 511 EGDNKYDAG-VHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIE 569
+ DN Y G L A K LPP L + L+RF +D V K + F RI
Sbjct: 213 DYDNLYHCGTCDRLVKAAKSAKLRKLPPFLTISLLRFNFDFVKCERYKDTSCYTFPLRIN 272
Query: 570 LDDFLKEKGPTPATYI--LHAVLVHSGDNHGGHYVVYI 605
L F ++ Y+ L +V++H G +GGHY VYI
Sbjct: 273 LKPFCEQSELDDMEYMYDLFSVIIHKGGCYGGHYHVYI 310
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 11/114 (9%)
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES----------DDSNKSVA 212
++ T G++NQG TCY++SLLQTL+FT + R+A++ + E D + +
Sbjct: 35 REFTNLSGIRNQGGTCYLSSLLQTLHFTPEFREALFSLGPEELGSLEDKDKPDAKVRIIP 94
Query: 213 LALQRVFHELQFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESS 265
L LQR+F +L D+ T LT SFGW + QHDVQE R+ E+S
Sbjct: 95 LQLQRLFAQLLLLDQEAASTIDLTDSFGWTNDEEMRQHDVQELNRILFSALETS 148
>sp|Q3V0C5|UBP48_MOUSE Ubiquitin carboxyl-terminal hydrolase 48 OS=Mus musculus GN=Usp48
PE=1 SV=2
Length = 1052
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 141/282 (50%), Gaps = 23/282 (8%)
Query: 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNK----------- 391
+ +K +VGL N GATCY+N+ LQ + +LR+A+Y P+ D K
Sbjct: 81 ERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYE 140
Query: 392 --SVALALQRVFHELQFSDKP-VGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLE--- 445
++ LQ +F LQ S++ + K+ G LD+ Q D QEF ++ + LE
Sbjct: 141 PQTICEHLQYLFALLQNSNRRYIDPSGFVKALG---LDTGQQQDAQEFSKLFMSLLEDTL 197
Query: 446 IKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYI 505
K K V V + F G+ C + S FY+++LN++G K + + +++
Sbjct: 198 SKQKNPDVRNVVQQQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFL 257
Query: 506 EPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEF 564
+ E LEGDN+Y Q+A + + +LP L+L LMRF +D T K N F
Sbjct: 258 KEERLEGDNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGF 317
Query: 565 YDRIELDDFLKEKGPTPATYILHAVLVHSG-DNHGGHYVVYI 605
+ ++++ +++ KG + Y L AVL+H G + GHY+ ++
Sbjct: 318 SESLDMEPYVEHKGGS-FVYELSAVLIHRGVSAYSGHYIAHV 358
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 17/111 (15%)
Query: 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNK----------- 209
+ +K +VGL N GATCY+N+ LQ + +LR+A+Y P+ D K
Sbjct: 81 ERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYE 140
Query: 210 --SVALALQRVFHELQFSDKP-VGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
++ LQ +F LQ S++ + K+ G LD+ Q D QEF ++
Sbjct: 141 PQTICEHLQYLFALLQNSNRRYIDPSGFVKALG---LDTGQQQDAQEFSKL 188
>sp|Q5ZM45|UBP48_CHICK Ubiquitin carboxyl-terminal hydrolase 48 OS=Gallus gallus GN=USP48
PE=2 SV=1
Length = 1033
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 140/280 (50%), Gaps = 21/280 (7%)
Query: 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVY-----------KMPTESDDSNK 391
+ +K +VGL N GATCY+N+ LQ + +LR+A+Y +P + D +
Sbjct: 81 ERRKKNAFVGLTNLGATCYVNTFLQMWFLNLELRQALYLCSSNEHAAGESIPKDKDYEPQ 140
Query: 392 SVALALQRVFHELQFSDKP-VGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLE---IK 447
++ LQ +F LQ S + + K+ G LD+ Q D QEF ++ + LE K
Sbjct: 141 TICEHLQYLFALLQNSKRRYIDPSGFVKALG---LDTGQQQDAQEFSKLFMSLLEDTLSK 197
Query: 448 MKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEP 507
K V V K F G+ C + S FY+++LN++G K + + ++++
Sbjct: 198 QKNPDVRNIVQKQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCITEFLKE 257
Query: 508 EVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYD 566
E LEGDN+Y Q+A + + +LP L+L LMRF +D T K N F +
Sbjct: 258 EKLEGDNRYFCETCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSE 317
Query: 567 RIELDDFLKEKGPTPATYILHAVLVHSG-DNHGGHYVVYI 605
++++ F+++K Y L AVL+H G + GHY+ ++
Sbjct: 318 LLDMEPFMEQKNGV-YVYELSAVLIHRGVSAYSGHYIAHV 356
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVY-----------KMPTESDDSNK 209
+ +K +VGL N GATCY+N+ LQ + +LR+A+Y +P + D +
Sbjct: 81 ERRKKNAFVGLTNLGATCYVNTFLQMWFLNLELRQALYLCSSNEHAAGESIPKDKDYEPQ 140
Query: 210 SVALALQRVFHELQFSDKP-VGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
++ LQ +F LQ S + + K+ G LD+ Q D QEF ++
Sbjct: 141 TICEHLQYLFALLQNSKRRYIDPSGFVKALG---LDTGQQQDAQEFSKL 186
>sp|Q86UV5|UBP48_HUMAN Ubiquitin carboxyl-terminal hydrolase 48 OS=Homo sapiens GN=USP48
PE=1 SV=1
Length = 1035
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 142/282 (50%), Gaps = 23/282 (8%)
Query: 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT-------------ESDDS 389
+ +K +VGL N GATCY+N+ LQ + +LR+A+Y P+ E D
Sbjct: 81 ERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMLGDGIQEEKDYE 140
Query: 390 NKSVALALQRVFHELQFSDKP-VGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLE--- 445
+++ LQ +F LQ S++ + K+ G LD+ Q D QEF ++ + LE
Sbjct: 141 PQTICEHLQYLFALLQNSNRRYIDPSGFVKALG---LDTGQQQDAQEFSKLFMSLLEDTL 197
Query: 446 IKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYI 505
K K V V + F G+ C + S FY+++LN++G K + + +++
Sbjct: 198 SKQKNPDVRNIVQQQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFL 257
Query: 506 EPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEF 564
+ E LEGDN+Y Q+A + + +LP L+L LMRF +D T K N F
Sbjct: 258 KEEKLEGDNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGF 317
Query: 565 YDRIELDDFLKEKGPTPATYILHAVLVHSG-DNHGGHYVVYI 605
+ ++++ +++ KG + Y L AVL+H G + GHY+ ++
Sbjct: 318 SEILDMEPYVEHKGGS-YVYELSAVLIHRGVSAYSGHYIAHV 358
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT-------------ESDDS 207
+ +K +VGL N GATCY+N+ LQ + +LR+A+Y P+ E D
Sbjct: 81 ERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMLGDGIQEEKDYE 140
Query: 208 NKSVALALQRVFHELQFSDKP-VGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
+++ LQ +F LQ S++ + K+ G LD+ Q D QEF ++
Sbjct: 141 PQTICEHLQYLFALLQNSNRRYIDPSGFVKALG---LDTGQQQDAQEFSKL 188
>sp|Q76LT8|UBP48_RAT Ubiquitin carboxyl-terminal hydrolase 48 OS=Rattus norvegicus
GN=Usp48 PE=1 SV=1
Length = 1036
Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 141/283 (49%), Gaps = 25/283 (8%)
Query: 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNK----------- 391
+ +K +VGL N GA+CY+N+ LQ + +LR+A+Y P+ D K
Sbjct: 81 ERRKKNSFVGLTNLGASCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIRGGKDYE 140
Query: 392 --SVALALQRVFHELQFSDKP-VGTKKLTKSFGWETLDSFMQHDVQE----FLRVLLDKL 444
++ LQ +F LQ S++ + K+ G LD+ Q D QE F+ +L D L
Sbjct: 141 PQTICEHLQYLFALLQNSNRRYIDPSGFVKALG---LDTGQQQDAQESSKLFMSLLEDTL 197
Query: 445 EIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDY 504
K K V V + F G+ C + S FY+++LN++G K + + ++
Sbjct: 198 S-KQKNPDVRNVVQQQFCGEYAYVTVCSQCGRESKLVSKFYELELNIQGHKQLTDCISEF 256
Query: 505 IEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFE 563
++ E LEGDN+Y Q+A + + +LP L+L LMRF +D T K N
Sbjct: 257 LKEERLEGDNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIG 316
Query: 564 FYDRIELDDFLKEKGPTPATYILHAVLVHSG-DNHGGHYVVYI 605
F + ++++ +++ KG + Y L AVL+H G + GHY+ ++
Sbjct: 317 FSESLDMEPYVEHKGGS-FVYELSAVLIHRGVSAYSGHYIAHV 358
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 17/107 (15%)
Query: 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNK----------- 209
+ +K +VGL N GA+CY+N+ LQ + +LR+A+Y P+ D K
Sbjct: 81 ERRKKNSFVGLTNLGASCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIRGGKDYE 140
Query: 210 --SVALALQRVFHELQFSDKP-VGTKKLTKSFGWETLDSFMQHDVQE 253
++ LQ +F LQ S++ + K+ G LD+ Q D QE
Sbjct: 141 PQTICEHLQYLFALLQNSNRRYIDPSGFVKALG---LDTGQQQDAQE 184
>sp|Q9SCJ9|UBP26_ARATH Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana
GN=UBP26 PE=1 SV=3
Length = 1067
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 127/263 (48%), Gaps = 12/263 (4%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKP 410
GL N GATCY NS+LQ LY R+ V+ + N V + R+F +L S K
Sbjct: 106 AGLTNLGATCYANSILQCLYMNTAFREGVFSVEVHVLKQNP-VLDQIARLFAQLHASQKS 164
Query: 411 -VGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKM--KGTCVEGTVPKLFEGKM-- 465
V + K+ LD+ +Q D EFL +LL LE + G + V LF G +
Sbjct: 165 FVDSDAFVKTL---ELDNGVQQDTHEFLTLLLSLLERCLLHSGVKAKTIVQDLFSGSVSH 221
Query: 466 -ISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAG-VHGL 523
+ KC + + SS+ E FY ++LNVKG K + S DY+ E L GDN+Y G +
Sbjct: 222 VTTCSKCGRDSEASSKMEDFYALELNVKGLKSLDASLNDYLSLEQLNGDNQYFCGSCNAR 281
Query: 524 QDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPAT 583
DA + + LPPV+ L R + P T K F F +++ L E T
Sbjct: 282 VDATRCIKLRTLPPVITFQLKRCIFLPKTTAKKKITSSFSFPQVLDMGSRLAESSQNKLT 341
Query: 584 YILHAVLVHSGDN-HGGHYVVYI 605
Y L AVL+H G + GHYV +I
Sbjct: 342 YDLSAVLIHKGSAVNSGHYVAHI 364
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKP 228
GL N GATCY NS+LQ LY R+ V+ + N V + R+F +L S K
Sbjct: 106 AGLTNLGATCYANSILQCLYMNTAFREGVFSVEVHVLKQN-PVLDQIARLFAQLHASQKS 164
Query: 229 -VGTKKLTKSFGWETLDSFMQHDVQEF 254
V + K+ LD+ +Q D EF
Sbjct: 165 FVDSDAFVKTL---ELDNGVQQDTHEF 188
>sp|A2XDG4|UBP26_ORYSI Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp.
indica GN=UBP26 PE=2 SV=1
Length = 1079
Score = 123 bits (308), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 16/265 (6%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVAL-ALQRVFHELQFSDK 409
GL N GATCY NS+LQ LY R ++ + E D L L R+F +L S
Sbjct: 106 AGLTNLGATCYANSILQCLYMNTSFRLGIFSL--EPDILKMHPVLDQLARLFAQLHSSKM 163
Query: 410 P-VGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGT---VPKLFEGKM 465
+ + K+ LD+ +Q D EFL + L LE + + V G V LF G +
Sbjct: 164 AFIDSAPFIKTL---ELDNGVQQDSHEFLTLFLSLLEGSLSHSKVPGARTIVQHLFRGSV 220
Query: 466 ISFIKCKKVNY---TSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDA-GVH 521
+C SS+ E FY+++LN+KG ++ +S DY+ E L+G+N+Y
Sbjct: 221 SHVTRCSSCGRDSEASSKMEDFYELELNIKGLNNLEQSLDDYLSTEALDGENQYFCESCQ 280
Query: 522 GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTP 581
DA + + +LPPV++ L R+ + P T K + F F ++++ L +
Sbjct: 281 KRVDATRCIKLRSLPPVVNFQLKRYVFLPKTTTKKKISSAFSFPGQLDMGKRLSNPS-SS 339
Query: 582 ATYILHAVLVHSGD-NHGGHYVVYI 605
TY L A+L+H G + GHYV ++
Sbjct: 340 YTYGLSAILIHKGSAANSGHYVAHV 364
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVAL-ALQRVFHELQFSDK 227
GL N GATCY NS+LQ LY R ++ + E D L L R+F +L S
Sbjct: 106 AGLTNLGATCYANSILQCLYMNTSFRLGIFSL--EPDILKMHPVLDQLARLFAQLHSSKM 163
Query: 228 P-VGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
+ + K+ LD+ +Q D EFL +
Sbjct: 164 AFIDSAPFIKTL---ELDNGVQQDSHEFLTL 191
>sp|A3AF13|UBP26_ORYSJ Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp.
japonica GN=UBP26 PE=2 SV=2
Length = 1079
Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 16/265 (6%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVAL-ALQRVFHELQFSDK 409
GL N GATCY NS+LQ LY R ++ + E D L L R+F +L S
Sbjct: 106 AGLTNLGATCYANSILQCLYMNTSFRLGIFSL--EPDILKMHPVLDQLARLFAQLHSSKM 163
Query: 410 P-VGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGT---VPKLFEGKM 465
+ + K+ LD+ +Q D EFL + L LE + + V G V LF G +
Sbjct: 164 AFIDSAPFIKTL---ELDNGVQQDSHEFLTLFLSLLEGSLSHSKVPGARTIVQHLFRGSV 220
Query: 466 ISFIKCKKVNY---TSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDA-GVH 521
+C SS+ E FY+++LN+KG ++ +S DY+ E L+G+N+Y
Sbjct: 221 SHVTRCSSCGRDSEASSKMEDFYELELNIKGLNNLEQSLDDYLSTEALDGENQYFCESCQ 280
Query: 522 GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTP 581
DA + + +LPPV++ L R+ + P T K + F F ++++ L +
Sbjct: 281 KRVDATRCIKLRSLPPVVNFQLKRYVFLPKTTTKKKISSAFSFPGQLDMGKRLSNPS-SS 339
Query: 582 ATYILHAVLVHSGD-NHGGHYVVYI 605
TY L A+L+H G + GHYV ++
Sbjct: 340 YTYGLSAILIHKGSAANSGHYVAHV 364
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVAL-ALQRVFHELQFSDK 227
GL N GATCY NS+LQ LY R ++ + E D L L R+F +L S
Sbjct: 106 AGLTNLGATCYANSILQCLYMNTSFRLGIFSL--EPDILKMHPVLDQLARLFAQLHSSKM 163
Query: 228 P-VGTKKLTKSFGWETLDSFMQHDVQEFLRV 257
+ + K+ LD+ +Q D EFL +
Sbjct: 164 AFIDSAPFIKTL---ELDNGVQQDSHEFLTL 191
>sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 OS=Mus musculus GN=Usp34
PE=1 SV=3
Length = 3582
Score = 120 bits (300), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 143/303 (47%), Gaps = 33/303 (10%)
Query: 332 VQADAPHGVSWDSKKH------TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE 385
+Q+ AP+ WD H +VGL N GATCY+ S +Q LY + R+AV+
Sbjct: 1908 MQSHAPY--KWDYWPHEDVRAECRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYS 1965
Query: 386 SDDSNKSVALALQRVFHELQFSD-KPVGTKKLTKSFGW--ETLDSFMQHDVQEFLRVLLD 442
D +K+ L LQ++F L S+ K + K++ + L++ Q D+ EF L+
Sbjct: 1966 EDMKHKTTLLELQKMFTYLMESECKAYNPRPFCKTYTMDKQPLNTGEQKDMTEFFTDLIT 2025
Query: 443 KLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFK 502
K+E +M ++ TV LF G + + + + S AE FY ++ V K+I ES
Sbjct: 2026 KVE-EMSPE-LKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVRCQVADMKNIYESLD 2083
Query: 503 DYIEPEVLEGDNKYDAGVHGLQ-DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDR 561
+ + LEGDN Y G + AEK F+ LP +L + MR+ ++ VT K N
Sbjct: 2084 EVTIKDTLEGDNMYTCSHCGKKVRAEKRACFKKLPRILSFNTMRYTFNMVTMMKEKVNTH 2143
Query: 562 FEFYDRIEL----DDFL---------------KEKGPTPATYILHAVLVHSGDNHGGHYV 602
F F R+++ +DFL + K Y L V VH+G GGHY
Sbjct: 2144 FSFPLRLDMTPYTEDFLMGKSDRKEGFKDVGDRSKDTESYEYDLIGVTVHTGTADGGHYY 2203
Query: 603 VYI 605
+I
Sbjct: 2204 SFI 2206
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 150 VQADAPHGVSWDSKKH------TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE 203
+Q+ AP+ WD H +VGL N GATCY+ S +Q LY + R+AV+
Sbjct: 1908 MQSHAPY--KWDYWPHEDVRAECRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYS 1965
Query: 204 SDDSNKSVALALQRVFHELQFSD-KPVGTKKLTKSFGW--ETLDSFMQHDVQEF 254
D +K+ L LQ++F L S+ K + K++ + L++ Q D+ EF
Sbjct: 1966 EDMKHKTTLLELQKMFTYLMESECKAYNPRPFCKTYTMDKQPLNTGEQKDMTEF 2019
>sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34
PE=1 SV=2
Length = 3546
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 142/303 (46%), Gaps = 33/303 (10%)
Query: 332 VQADAPHGVSWDSKKH------TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE 385
+Q+ AP+ WD H +VGL N GATCY+ S +Q LY + R+AV+
Sbjct: 1871 MQSHAPY--KWDYWPHEDVRAECRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYS 1928
Query: 386 SDDSNKSVALALQRVFHELQFSD-KPVGTKKLTKSFGW--ETLDSFMQHDVQEFLRVLLD 442
D +K+ L LQ++F L S+ K + K++ + L++ Q D+ EF L+
Sbjct: 1929 EDMKHKTTLLELQKMFTYLMESECKAYNPRPFCKTYTMDKQPLNTGEQKDMTEFFTDLIT 1988
Query: 443 KLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFK 502
K+E +M ++ TV LF G + + + + S AE FY ++ V K+I ES
Sbjct: 1989 KIE-EMSPE-LKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVRCQVADMKNIYESLD 2046
Query: 503 DYIEPEVLEGDNKYDAGVHGLQ-DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDR 561
+ + LEGDN Y G + AEK F+ LP +L + MR+ ++ VT K N
Sbjct: 2047 EVTIKDTLEGDNMYTCSHCGKKVRAEKRACFKKLPRILSFNTMRYTFNMVTMMKEKVNTH 2106
Query: 562 FEFYDRIEL----DDFL---------------KEKGPTPATYILHAVLVHSGDNHGGHYV 602
F F R+++ +DFL K Y L V VH+G GGHY
Sbjct: 2107 FSFPLRLDMTPYTEDFLMGKSERKEGFKEVSDHSKDSESYEYDLIGVTVHTGTADGGHYY 2166
Query: 603 VYI 605
+I
Sbjct: 2167 SFI 2169
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 150 VQADAPHGVSWDSKKH------TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE 203
+Q+ AP+ WD H +VGL N GATCY+ S +Q LY + R+AV+
Sbjct: 1871 MQSHAPY--KWDYWPHEDVRAECRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYS 1928
Query: 204 SDDSNKSVALALQRVFHELQFSD-KPVGTKKLTKSFGW--ETLDSFMQHDVQEF 254
D +K+ L LQ++F L S+ K + K++ + L++ Q D+ EF
Sbjct: 1929 EDMKHKTTLLELQKMFTYLMESECKAYNPRPFCKTYTMDKQPLNTGEQKDMTEF 1982
>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo sapiens
GN=USP9X PE=1 SV=3
Length = 2570
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 167/444 (37%), Gaps = 131/444 (29%)
Query: 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDD-----------SNKSVALAL 397
G+VGLKN GATCYMNS++Q LY +R + + D N+S
Sbjct: 1555 GFVGLKNAGATCYMNSVIQQLYMIPSIRNGILAIEGTGSDVDDDMSGDEKQDNESNVDPR 1614
Query: 398 QRVF-HELQFSDKPVGTKK-------------LTKSFG---------------------W 422
VF + QF DKP +K L FG W
Sbjct: 1615 DDVFGYPQQFEDKPALSKTEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLW 1674
Query: 423 -ETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRA 481
E ++ QHD EF L+D L+ +K + K+ G C+ +
Sbjct: 1675 GEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECE 1734
Query: 482 ETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLH 540
E+F + ++++ +++L+S + Y++ ++LEG N Y + D K + + LPPVL
Sbjct: 1735 ESFTTLNVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLA 1794
Query: 541 LHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDF-------LKEKGPTPAT---------- 583
+ L RF YD +C++KFND FEF ++++ + L+ P +
Sbjct: 1795 IQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDNVNPESQLIQQSEQSE 1854
Query: 584 --------YILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPR 635
Y L VLVHSG GGHY YI
Sbjct: 1855 SETAGSTKYRLVGVLVHSGQASGGHYYSYI------------------------------ 1884
Query: 636 RKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKD---EAVAHNFGGNDEDSGLTVK 692
+ GE + W KFDD V++C D E FGG E G
Sbjct: 1885 -----------IQRNGGDGERNRWYKFDDGDVTECKMDDDEEMKNQCFGG--EYMGEVFD 1931
Query: 693 HST------------NAYMLVYIR 704
H NAY+L Y R
Sbjct: 1932 HMMKRMSYRRQKRWWNAYILFYER 1955
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDD-----------SNKSVALAL 215
G+VGLKN GATCYMNS++Q LY +R + + D N+S
Sbjct: 1555 GFVGLKNAGATCYMNSVIQQLYMIPSIRNGILAIEGTGSDVDDDMSGDEKQDNESNVDPR 1614
Query: 216 QRVF-HELQFSDKPVGTK 232
VF + QF DKP +K
Sbjct: 1615 DDVFGYPQQFEDKPALSK 1632
>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Mus musculus
GN=Usp9x PE=1 SV=2
Length = 2559
Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 168/444 (37%), Gaps = 131/444 (29%)
Query: 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDD-----------SNKSVALAL 397
G+VGLKN GATCYMNS++Q LY +R + + D N+S
Sbjct: 1555 GFVGLKNAGATCYMNSVIQQLYMIPSIRNGILAIEGTGSDVDDDMSGDEKQDNESNVDPR 1614
Query: 398 QRVF-HELQFSDKP------------VGT-KKLTKSFG---------------------W 422
VF + QF DKP +G + L FG W
Sbjct: 1615 DDVFGYPQQFEDKPPLSKTEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLW 1674
Query: 423 -ETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRA 481
E ++ QHD EF L+D L+ +K + K+ G C+ +
Sbjct: 1675 GEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECE 1734
Query: 482 ETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLH 540
E+F + ++++ +++L+S + Y++ ++LEG N Y + D K + + LPPVL
Sbjct: 1735 ESFTTLNVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLA 1794
Query: 541 LHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDF-------LKEKGPTPAT---------- 583
+ L RF YD +C++KFND FEF ++++ + L+ P +
Sbjct: 1795 IQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDNVNPESQLIQQNEQSE 1854
Query: 584 --------YILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPR 635
Y L VLVHSG GGHY YI
Sbjct: 1855 SEKAGSTKYRLVGVLVHSGQASGGHYYSYI------------------------------ 1884
Query: 636 RKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKD---EAVAHNFGGNDEDSGLTVK 692
+ GE + W KFDD V++C D E FGG E G
Sbjct: 1885 -----------IQRNGGDGEKNRWYKFDDGDVTECKMDDDEEMKNQCFGG--EYMGEVFD 1931
Query: 693 HST------------NAYMLVYIR 704
H NAY+L Y R
Sbjct: 1932 HMMKRMSYRRQKRWWNAYILFYER 1955
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDD 206
G+VGLKN GATCYMNS++Q LY +R + + D
Sbjct: 1555 GFVGLKNAGATCYMNSVIQQLYMIPSIRNGILAIEGTGSD 1594
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo sapiens
GN=USP9Y PE=1 SV=2
Length = 2555
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 138/330 (41%), Gaps = 73/330 (22%)
Query: 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT------------ESDDSNKSVALA 396
G+VGLKN GATCYMNS++Q LY +R ++ + E DS +V
Sbjct: 1557 GFVGLKNAGATCYMNSVIQQLYMIPSIRNSILAIEGTGSDLHDDMFGDEKQDSESNVDPR 1616
Query: 397 LQRVFHELQFSDKPVGTKK-------------LTKSFG---------------------W 422
+ QF DKP +K L FG W
Sbjct: 1617 DDVFGYPHQFEDKPALSKTEDRKEYNIGVLRHLQVIFGHLAASQLQYYVPRGFWKQFRLW 1676
Query: 423 -ETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRA 481
E ++ QHD EF L+D L+ +K + K+ G C+ +
Sbjct: 1677 GEPVNLREQHDALEFFNSLVDSLDEALKALGHPAILSKVLGGSFADQKICQGCPHRYECE 1736
Query: 482 ETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLH 540
E+F + ++++ +++L+S + YI+ ++LEG N Y D K + + LP VL
Sbjct: 1737 ESFTTLNVDIRNHQNLLDSLEQYIKGDLLEGANAYHCEKCDKKVDTVKRLLIKKLPRVLA 1796
Query: 541 LHLMRFQYDPVTDCSVKFNDRFEFYDRIEL-------------------DDFLKEKGPT- 580
+ L RF YD +C++KFND FEF +++ ++ +++K +
Sbjct: 1797 IQLKRFDYDWERECAIKFNDYFEFPRELDMGPYTVAGVANLERDNVNSENELIEQKEQSD 1856
Query: 581 -----PATYILHAVLVHSGDNHGGHYVVYI 605
Y L VLVHSG GGHY YI
Sbjct: 1857 NETAGGTKYRLVGVLVHSGQASGGHYYSYI 1886
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT------------ESDDSNKSVALA 214
G+VGLKN GATCYMNS++Q LY +R ++ + E DS +V
Sbjct: 1557 GFVGLKNAGATCYMNSVIQQLYMIPSIRNSILAIEGTGSDLHDDMFGDEKQDSESNVDPR 1616
Query: 215 LQRVFHELQFSDKPVGTK 232
+ QF DKP +K
Sbjct: 1617 DDVFGYPHQFEDKPALSK 1634
>sp|B1AY13|UBP24_MOUSE Ubiquitin carboxyl-terminal hydrolase 24 OS=Mus musculus GN=Usp24
PE=1 SV=1
Length = 2617
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 146/329 (44%), Gaps = 50/329 (15%)
Query: 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFH 402
DS+ +G+VGL+N GATCYMN++ Q LY L +++ + ++D+ + SV +Q +F
Sbjct: 1678 DSRSSSGFVGLRNGGATCYMNAVFQQLYMQPGLPESLLSVDDDTDNPDDSVFYQVQSLFG 1737
Query: 403 ELQFSD----KPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVP 458
L S P K+ K + E L Q D EF L+D+++ +K E
Sbjct: 1738 HLMESKLQYYVPENFWKIFKMWNKE-LYVREQQDAYEFFTSLIDQMDEYLKKMGREQIFK 1796
Query: 459 KLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDA 518
F+G CK + R E F + L V + + S ++ EVLEG N Y
Sbjct: 1797 NTFQGIYSDQKICKDCPHRYEREEAFMALNLGVTSCQSLEISLDQFVRGEVLEGSNAY-- 1854
Query: 519 GVHGLQDAEKGVT-----FENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDF 573
+ + EK +T ++LP VL +HLMRF +D + S+K++++ F + ++ +
Sbjct: 1855 --YCEKCKEKRITVKRTCIKSLPSVLVIHLMRFGFDWESGRSIKYDEQIRFPWMLNMEPY 1912
Query: 574 L----------------------------KEKGPTPATYILHAVLVHSGDNHGGHYVVYI 605
++K Y L V+VHSG H GHY +I
Sbjct: 1913 TVAGMARQDSSSEVGENGRNMDQGGGGSPRKKVALTENYELVGVIVHSGQAHAGHYYSFI 1972
Query: 606 -NPKGDNKS-------TALPPFDKDAEVL 626
+ +G K T + FD + E L
Sbjct: 1973 KDRRGCGKGKWYKFNDTVIEEFDLNDETL 2001
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFH 220
DS+ +G+VGL+N GATCYMN++ Q LY L +++ + ++D+ + SV +Q +F
Sbjct: 1678 DSRSSSGFVGLRNGGATCYMNAVFQQLYMQPGLPESLLSVDDDTDNPDDSVFYQVQSLFG 1737
Query: 221 EL 222
L
Sbjct: 1738 HL 1739
>sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo sapiens GN=USP24
PE=1 SV=3
Length = 2620
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 146/329 (44%), Gaps = 50/329 (15%)
Query: 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFH 402
DS+ +G+VGL+N GATCYMN++ Q LY L +++ + ++D+ + SV +Q +F
Sbjct: 1681 DSRSSSGFVGLRNGGATCYMNAVFQQLYMQPGLPESLLSVDDDTDNPDDSVFYQVQSLFG 1740
Query: 403 ELQFSD----KPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVP 458
L S P K+ K + E L Q D EF L+D+++ +K +
Sbjct: 1741 HLMESKLQYYVPENFWKIFKMWNKE-LYVREQQDAYEFFTSLIDQMDEYLKKMGRDQIFK 1799
Query: 459 KLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDA 518
F+G CK + R E F + L V + + S ++ EVLEG N Y
Sbjct: 1800 NTFQGIYSDQKICKDCPHRYEREEAFMALNLGVTSCQSLEISLDQFVRGEVLEGSNAY-- 1857
Query: 519 GVHGLQDAEKGVT-----FENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDF 573
+ + EK +T ++LP VL +HLMRF +D + S+K++++ F + ++ +
Sbjct: 1858 --YCEKCKEKRITVKRTCIKSLPSVLVIHLMRFGFDWESGRSIKYDEQIRFPWMLNMEPY 1915
Query: 574 L----------------------------KEKGPTPATYILHAVLVHSGDNHGGHYVVYI 605
++K Y L V+VHSG H GHY +I
Sbjct: 1916 TVSGMARQDSSSEVGENGRSVDQGGGGSPRKKVALTENYELVGVIVHSGQAHAGHYYSFI 1975
Query: 606 -NPKGDNKS-------TALPPFDKDAEVL 626
+ +G K T + FD + E L
Sbjct: 1976 KDRRGCGKGKWYKFNDTVIEEFDLNDETL 2004
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFH 220
DS+ +G+VGL+N GATCYMN++ Q LY L +++ + ++D+ + SV +Q +F
Sbjct: 1681 DSRSSSGFVGLRNGGATCYMNAVFQQLYMQPGLPESLLSVDDDTDNPDDSVFYQVQSLFG 1740
Query: 221 EL 222
L
Sbjct: 1741 HL 1742
>sp|P55824|FAF_DROME Probable ubiquitin carboxyl-terminal hydrolase FAF OS=Drosophila
melanogaster GN=faf PE=1 SV=2
Length = 2778
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 116/490 (23%), Positives = 178/490 (36%), Gaps = 141/490 (28%)
Query: 307 FMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSWD------SKKHTGYVGLKNQGATC 360
+ L P+ + + ++I VC D WD ++ G+ GLKN GATC
Sbjct: 1621 LIALCQLCVPNMKLLTN-TLIDFVCTDTDPLR--EWDYLPPVGARPTKGFCGLKNAGATC 1677
Query: 361 YMNSLLQTLYFTNQLR-----------------------------KAVYKMPTESDDSNK 391
YMNS+LQ LY +R A++ P + S
Sbjct: 1678 YMNSVLQQLYMVPAVRVGILRAHGAATTDGEDFSGDSDLTGGGLGSALFSGPASALVSLP 1737
Query: 392 SVALALQRVFHELQFSDKPVGTKKLTKSFG---------------W-------ETLDSFM 429
S + ++ H+++ + V K + F W E ++
Sbjct: 1738 SSSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEPVNLRE 1797
Query: 430 QHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQL 489
Q D EF LL+ L+ +K + G C++ + S+ E F +
Sbjct: 1798 QQDAVEFFMSLLESLDEGLKALGQPQLMNATLGGSFSDQKICQECPHRYSKEEPFSVFSV 1857
Query: 490 NVKGKKDILESFKDYIEPEVLEGDNKY-----DAGVHGLQDAEKGVTFENLPPVLHLHLM 544
+++ + ES + Y++ E+LEG + Y D V + K V + LPPVL + L
Sbjct: 1858 DIRNHSSLTESLEQYVKGELLEGADAYHCDKCDKKVVTV----KRVCVKKLPPVLAIQLK 1913
Query: 545 RFQYDPVTDCSVKFNDRFEFYDRIELDDF-----------LKEKGPTPAT------YILH 587
RF+YD C++KFND FEF ++++ + + E G T Y L
Sbjct: 1914 RFEYDYERVCAIKFNDYFEFPRILDMEPYTVSGLAKLEGEVVEVGDNCQTNVETTKYELT 1973
Query: 588 AVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYL 647
++VHSG GGHY YI K P + +
Sbjct: 1974 GIVVHSGQASGGHYFSYILSKN--------PANGKCQ----------------------- 2002
Query: 648 HMTESIGEYHPWCKFDDDVVSKCS-------KDEAVAHNFGGNDEDSGLT------VKHS 694
W KFDD V++C K E + G D+ L K
Sbjct: 2003 -----------WYKFDDGEVTECKMHEDEEMKAECFGGEYMGETYDNNLKRMQYRRQKRW 2051
Query: 695 TNAYMLVYIR 704
NAYML Y R
Sbjct: 2052 WNAYMLFYTR 2061
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 125 FMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSWD------SKKHTGYVGLKNQGATC 178
+ L P+ + + ++I VC D WD ++ G+ GLKN GATC
Sbjct: 1621 LIALCQLCVPNMKLLTN-TLIDFVCTDTDPLR--EWDYLPPVGARPTKGFCGLKNAGATC 1677
Query: 179 YMNSLLQTLYFTNQLRKAVYK 199
YMNS+LQ LY +R + +
Sbjct: 1678 YMNSVLQQLYMVPAVRVGILR 1698
>sp|Q5RBQ4|UBP46_PONAB Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46
PE=2 SV=1
Length = 366
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 122/290 (42%), Gaps = 31/290 (10%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ V + +++ L +FH + K
Sbjct: 34 YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQ-KKKENLLTCLADLFHSIATQKK 92
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLLD---------KLEIKMKGTCVEG 455
VG KK E D++MQ D EFL LL+ K + K G G
Sbjct: 93 KVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNG 152
Query: 456 T--------------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESF 501
V ++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 153 NMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCL 212
Query: 502 KDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFND 560
+D+ E L + KY Q+A+K + + LP +L LHL RF+Y K +
Sbjct: 213 RDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSY 272
Query: 561 RFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYINPKG 609
R F + L + + Y L AV+VH G + GHY+ + G
Sbjct: 273 RVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHG 322
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ V + +++ L +FH + K
Sbjct: 34 YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQ-KKKENLLTCLADLFHSIATQKK 92
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 93 KVGVIPPKKFISRLRKENDLFDNYMQQDAHEFL 125
>sp|P62069|UBP46_MOUSE Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46
PE=1 SV=1
Length = 366
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 122/290 (42%), Gaps = 31/290 (10%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ V + +++ L +FH + K
Sbjct: 34 YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQ-KKKENLLTCLADLFHSIATQKK 92
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLLD---------KLEIKMKGTCVEG 455
VG KK E D++MQ D EFL LL+ K + K G G
Sbjct: 93 KVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNG 152
Query: 456 T--------------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESF 501
V ++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 153 NMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCL 212
Query: 502 KDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFND 560
+D+ E L + KY Q+A+K + + LP +L LHL RF+Y K +
Sbjct: 213 RDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSY 272
Query: 561 RFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYINPKG 609
R F + L + + Y L AV+VH G + GHY+ + G
Sbjct: 273 RVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHG 322
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ V + +++ L +FH + K
Sbjct: 34 YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQ-KKKENLLTCLADLFHSIATQKK 92
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 93 KVGVIPPKKFISRLRKENDLFDNYMQQDAHEFL 125
>sp|P62068|UBP46_HUMAN Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46
PE=1 SV=1
Length = 366
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 122/290 (42%), Gaps = 31/290 (10%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ V + +++ L +FH + K
Sbjct: 34 YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQ-KKKENLLTCLADLFHSIATQKK 92
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLLD---------KLEIKMKGTCVEG 455
VG KK E D++MQ D EFL LL+ K + K G G
Sbjct: 93 KVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNG 152
Query: 456 T--------------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESF 501
V ++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 153 NMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCL 212
Query: 502 KDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFND 560
+D+ E L + KY Q+A+K + + LP +L LHL RF+Y K +
Sbjct: 213 RDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSY 272
Query: 561 RFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYINPKG 609
R F + L + + Y L AV+VH G + GHY+ + G
Sbjct: 273 RVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHG 322
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ V + +++ L +FH + K
Sbjct: 34 YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQ-KKKENLLTCLADLFHSIATQKK 92
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 93 KVGVIPPKKFISRLRKENDLFDNYMQQDAHEFL 125
>sp|A5WWB0|UBP46_DANRE Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio rerio GN=usp46
PE=3 SV=2
Length = 370
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 124/294 (42%), Gaps = 35/294 (11%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ V + +++ L +FH + K
Sbjct: 34 YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKVQQ-KKKENLLTCLADLFHSIATQKK 92
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLLDKL---------------EIKMK 449
VG KK E D++MQ D EFL LL+ + +K
Sbjct: 93 KVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTVADILQEERKQEKQNGRLKNN 152
Query: 450 GTCVEGT------------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDI 497
GT + V ++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 153 GTAIATDTEPEQNKIDPTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSI 212
Query: 498 LESFKDYIEPEVLEGDNKYDAGV-HGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSV 556
+D+ E L + KY + Q+A+K + + LP +L LHL RF+Y
Sbjct: 213 THCLRDFSNTETLCSEYKYYCEMCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYT 272
Query: 557 KFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYINPKG 609
K + R F + L + + Y L AV+VH G + GHY+ + G
Sbjct: 273 KLSYRVVFPLELRLFNTSGDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHG 326
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ V + +++ L +FH + K
Sbjct: 34 YFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKVQQ-KKKENLLTCLADLFHSIATQKK 92
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 93 KVGVIPPKKFISRLRKENDLFDNYMQQDAHEFL 125
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana
GN=UBP15 PE=2 SV=2
Length = 924
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 43/338 (12%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALA--LQRVFHELQFSDK 409
GL N G +CY N++LQ+L T L + + S K L L++ L+ S
Sbjct: 439 GLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCSGKDWCLMCELEQHVMMLRESGG 498
Query: 410 PVGTKKL---TKSFGWETLDSFMQHDVQEFLRVLLDKL----------EIKMKGTCVEGT 456
P+ ++ +S + D Q D EFLR+L+ + E K+ E T
Sbjct: 499 PLSASRILSHMRSINCQIGDG-SQEDAHEFLRLLVASMQSICLERLGGETKVDPRLQETT 557
Query: 457 -VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILE-SFKDYIEPEVLEGDN 514
V +F G++ S +KC + ++ S R E D+ L + G + L+ + + PE L+G+N
Sbjct: 558 LVQHMFGGRLRSKVKCLRCDHESERYENIMDLTLEIYGWVESLQDALTQFTRPEDLDGEN 617
Query: 515 KYDAG-VHGLQDAEKGVTFENLPPVLHLHLMRFQ---YDPVTDCSVKFNDRFEFYDRIEL 570
Y G A K ++ P +L + L RFQ Y + C F + +++
Sbjct: 618 MYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQEGRYGKINKC-------ISFPEMLDM 670
Query: 571 DDFLKEKGPTPATYILHAVLVH---SGDNHGGHYVVYI-NPKG------DNKSTALP--- 617
F+ G P Y+L+AV+VH + GHY+ Y+ + +G D++ +P
Sbjct: 671 IPFMTRTGDVPPLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPVPMTQ 730
Query: 618 PFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGE 655
+ A +LF+ + Y PR ++ + G A +H ++ E
Sbjct: 731 VMSEGAYMLFYMRSY-PRPQRGEHNGKAPVHHSQPRNE 767
>sp|A5D9H7|UBP12_BOVIN Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12
PE=2 SV=1
Length = 369
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 121/285 (42%), Gaps = 30/285 (10%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ V ++ +S+ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKESLLTCLADLFHSIATQKK 96
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLL----DKLEIKMKGTCVEGTVP-- 458
VG KK E D++MQ D EFL LL D L+ + K G +P
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNG 156
Query: 459 ----------------KLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFK 502
++F+G + + +C SS+ E F D+ ++V+ I +
Sbjct: 157 NIDSENNSTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLR 216
Query: 503 DYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDR 561
+ E L + KY Q+A K + + LP +L LHL RF+Y K + R
Sbjct: 217 GFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYR 276
Query: 562 FEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYI 605
F + L + + Y L AV+VH G + GHY+ +
Sbjct: 277 VVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIV 321
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ V ++ +S+ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKESLLTCLADLFHSIATQKK 96
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFL 129
>sp|O75317|UBP12_HUMAN Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12
PE=1 SV=2
Length = 370
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 121/286 (42%), Gaps = 31/286 (10%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ V ++ +S+ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKESLLTCLADLFHSIATQKK 96
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLL----DKLEIKMKGTCVEGTVP-- 458
VG KK E D++MQ D EFL LL D L+ + K G +P
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNG 156
Query: 459 -----------------KLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESF 501
++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 157 NIDNENNNSTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCL 216
Query: 502 KDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFND 560
+ + E L + KY Q+A K + + LP +L LHL RF+Y K +
Sbjct: 217 RGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSY 276
Query: 561 RFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYI 605
R F + L + + Y L AV+VH G + GHY+ +
Sbjct: 277 RVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIV 322
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ V ++ +S+ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKESLLTCLADLFHSIATQKK 96
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFL 129
>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a
PE=2 SV=1
Length = 371
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 121/287 (42%), Gaps = 32/287 (11%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ + ++ +++ L +FH + +
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKILAYRSQP-RRKENLLTCLADLFHSIANQKR 96
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLLDKL---------EIKMKGTCVEG 455
VG KK E D++MQ D EFL LL+ + + K G G
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADLLQEERKQDKQNGKLANG 156
Query: 456 T---------------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILES 500
T V ++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 157 TLDSQNNNSTPPSTTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHC 216
Query: 501 FKDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFN 559
+ + E L + KY Q+A K + + LP +L LHL RF+Y K +
Sbjct: 217 LRGFSNTETLCSEYKYYCEECRSKQEAHKRMRVKKLPMILALHLKRFKYMEQLQRYTKLS 276
Query: 560 DRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYI 605
R F + L + + Y L AV+VH G + GHY+ +
Sbjct: 277 YRVVFPLELRLFNTSGDATNPERLYDLVAVVVHCGSGPNRGHYIAIV 323
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ + ++ +++ L +FH + +
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKILAYRSQP-RRKENLLTCLADLFHSIANQKR 96
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFL 129
>sp|P50102|UBP8_YEAST Ubiquitin carboxyl-terminal hydrolase 8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP8 PE=1 SV=1
Length = 471
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 154/368 (41%), Gaps = 55/368 (14%)
Query: 288 SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL----EVCVQADAPHGVSWD 343
S++I H+F I N+ F + + D + +D+I+ +VC + P
Sbjct: 78 SKQIGHIFGINSNNGLLFCFKCEDYIGNID---LINDAILAKYWDDVCTKTMVP-----S 129
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQR 399
++ G GL N G+TC+M+S+LQ L YF ++ + +K + AL +
Sbjct: 130 MERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDK 189
Query: 400 VFHEL-------QFSDKPVGTKKLTK-----SFGW---ETLDSFMQHDVQEFLRVLLDKL 444
+ HEL Q S T + T + W + L + Q D EF + +++++
Sbjct: 190 IVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQI 249
Query: 445 E-------------IKMKGTCVEGTVPKLFEGKMISFIKCKKV-NYTSSRAETFYDIQLN 490
+ E V +FEG + S I C N + + + F D+ L+
Sbjct: 250 HQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLD 309
Query: 491 VKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDP 550
+K KK + E + + E L+ N + + QDA K + LP VL L L RF++
Sbjct: 310 IKDKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEH-L 368
Query: 551 VTDCSVKFNDRFEFYDRIELDDFL--------KEKGPTP-ATYILHAVLVHSGDNHGGHY 601
+ + K +D EF + + ++ E G P Y L ++ H G + GHY
Sbjct: 369 LNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHY 428
Query: 602 VVYINPKG 609
+ + G
Sbjct: 429 IAFCKISG 436
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIIL----EVCVQADAPHGVSWDS 162
++I H+F I N+ F + + D + +D+I+ +VC + P
Sbjct: 79 KQIGHIFGINSNNGLLFCFKCEDYIGNID---LINDAILAKYWDDVCTKTMVP-----SM 130
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQRV 218
++ G GL N G+TC+M+S+LQ L YF ++ + +K + AL ++
Sbjct: 131 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKI 190
Query: 219 FHEL-------QFSDKPVGTKKLTK-----SFGW---ETLDSFMQHDVQEF 254
HEL Q S T + T + W + L + Q D EF
Sbjct: 191 VHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEF 241
>sp|Q52KZ6|UB12A_XENLA Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis
GN=usp12-a PE=2 SV=1
Length = 370
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 121/286 (42%), Gaps = 31/286 (10%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ V ++ +++ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKENLLTCLSDLFHSIATQKK 96
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLL----DKLEIKMKGTCVEGTVP-- 458
VG KK E D++MQ D EFL LL D L+ + K G +P
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRIPNG 156
Query: 459 -----------------KLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESF 501
++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 157 NIDNENNNSAPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCL 216
Query: 502 KDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFND 560
+ + E L + KY Q+A K + + LP +L LHL RF+Y K +
Sbjct: 217 RGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSY 276
Query: 561 RFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYI 605
R F + L + + Y L AV+VH G + GHY+ +
Sbjct: 277 RVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIV 322
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ V ++ +++ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKENLLTCLSDLFHSIATQKK 96
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFL 129
>sp|Q5M981|UB12B_XENLA Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis
GN=usp12-b PE=2 SV=2
Length = 370
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 121/286 (42%), Gaps = 31/286 (10%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ V ++ +++ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKENLLTCLSDLFHSIATQKK 96
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLL----DKLEIKMKGTCVEGTVP-- 458
VG KK E D++MQ D EFL LL D L+ + K G +P
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRIPNG 156
Query: 459 -----------------KLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESF 501
++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 157 NIDNENNNNTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCL 216
Query: 502 KDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFND 560
+ + E L + KY Q+A K + + LP +L LHL RF+Y K +
Sbjct: 217 RGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSY 276
Query: 561 RFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYI 605
R F + L + + Y L AV+VH G + GHY+ +
Sbjct: 277 RVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIV 322
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ V ++ +++ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKENLLTCLSDLFHSIATQKK 96
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFL 129
>sp|Q6QN14|U17L6_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 6 OS=Homo
sapiens GN=USP17L6 PE=1 SV=2
Length = 398
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 51/319 (15%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDS---NKSVALA-----LQRVFH 402
GL+N G TCY+N+ LQ L +T L A Y + E + +K L + R H
Sbjct: 80 AGLQNMGNTCYVNASLQCLTYTPPL--ANYMLSREHSQTCHRHKGCMLCTMQAHITRALH 137
Query: 403 ELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEG------- 455
+P ++ L F Q D EFL +D MK C+ G
Sbjct: 138 NPGHVIQP--SQALAAGF-----HRGKQEDAHEFLMFTVDA----MKKACLPGHKQVDHH 186
Query: 456 -----TVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVL 510
+ ++F G S IKC + S + + DI L+++ + + ++ + ++PE L
Sbjct: 187 SKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEEL 246
Query: 511 EGDNKYDAGVHGLQ--DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRI 568
G+N Y GV LQ A K +T VL L L RF VT + N ++ + +
Sbjct: 247 NGENAYHCGV-CLQRAPASKTLTLHTSAKVLILVLKRF--SDVTGNKIAKN--VQYPECL 301
Query: 569 ELDDFLKEKGPTPATYILHAVLVHSG-DNHGGHYVVYINPKGD----------NKSTALP 617
++ ++ ++ P Y+L+AVLVH+G H GHY Y+ + S+
Sbjct: 302 DMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITS 361
Query: 618 PFDKDAEVLFFFKLYEPRR 636
+ A VLF+ + E R
Sbjct: 362 VLSQQAYVLFYIQKSEWER 380
>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana
GN=UBP4 PE=1 SV=2
Length = 365
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 152/351 (43%), Gaps = 55/351 (15%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYK-MPTESDDSNKSVALALQRVFHELQFSD 408
Y G +N G TCY NS+LQ LYF R+ + + D+ +++ L +F ++
Sbjct: 22 YFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNKADAEENLLTCLADLFSQISSQK 81
Query: 409 KPVGT---KKLTKSFGW--ETLDSFMQHDVQEFLRVLLDKL-EI---------------- 446
K G K+ + E S+M D EFL LL++L EI
Sbjct: 82 KKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVEILEKETQATKADNETSS 141
Query: 447 -------KMKGTCVEGT--------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNV 491
+K G V K+F+G + + +C + ++R ETF D+ L++
Sbjct: 142 SPEKIANVLKAPLANGVHKEPIVTWVHKIFQGILTNETRCLRCETVTARDETFLDLSLDI 201
Query: 492 KGKKDILESFKDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDP 550
+ I K++ E L ++K+ LQ+A+K + + P +L +HL RF+Y
Sbjct: 202 EQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYME 261
Query: 551 VTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVH--SGDNHGGHYVVYINPK 608
K + R F ++L + + E Y L AV+VH SG NH GHYV +
Sbjct: 262 QLGRYKKLSYRVVFPLELKLSNTVDEY--VDIEYSLFAVVVHVGSGPNH-GHYVSLVKSH 318
Query: 609 G-----DNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIG 654
D++S + +++ V FF ++ S H Y+ + ES+G
Sbjct: 319 NHWLFFDDESVEII---EESAVQTFFG---SSQEYSSNTDHGYILLYESLG 363
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYK-MPTESDDSNKSVALALQRVFHELQFSD 226
Y G +N G TCY NS+LQ LYF R+ + + D+ +++ L +F ++
Sbjct: 22 YFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNKADAEENLLTCLADLFSQISSQK 81
Query: 227 KPVGT---KKLTKSFGW--ETLDSFMQHDVQEFL 255
K G K+ + E S+M D EFL
Sbjct: 82 KKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFL 115
>sp|C0HB46|UBP12_SALSA Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12
PE=2 SV=1
Length = 372
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 121/288 (42%), Gaps = 33/288 (11%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ + ++ +++ L +FH + +
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKILAYRSQP-RRKENLLTCLADLFHSIANQKR 96
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLLDKL---------EIKMKGTCVEG 455
VG KK E D++MQ D EFL LL+ + + K G G
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADLLQEERKQDKTNGRLANG 156
Query: 456 T----------------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILE 499
+ V ++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 157 SLDSQNHNSNAPPPSTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITH 216
Query: 500 SFKDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKF 558
+ + E L + KY Q+A K + + LP +L LHL RF+Y K
Sbjct: 217 CLRGFSNTETLCSEYKYYCEECRSKQEAHKRMRVKKLPMILALHLKRFKYMEQLQRYTKL 276
Query: 559 NDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYI 605
+ R F + L + + Y L AV+VH G + GHY+ +
Sbjct: 277 SYRVVFPLELRLFNTSGDATNPERLYDLVAVVVHCGSGPNRGHYIAIV 324
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ + ++ +++ L +FH + +
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKILAYRSQP-RRKENLLTCLADLFHSIANQKR 96
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFL 129
>sp|Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12
PE=2 SV=2
Length = 370
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 120/286 (41%), Gaps = 31/286 (10%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 409
Y GL N G TCY NS+LQ LYF R+ V ++ +++ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKENLLTCLADLFHSIATQKK 96
Query: 410 PVGT---KKLTKSFGWET--LDSFMQHDVQEFLRVLLDKL---------EIKMKGTCVEG 455
VG KK E D++MQ D EFL LL+ + + K G G
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLRNG 156
Query: 456 TVP--------------KLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESF 501
V ++F+G + + +C SS+ E F D+ ++V+ I
Sbjct: 157 DVDNEDNNSTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCL 216
Query: 502 KDYIEPEVLEGDNKYDA-GVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFND 560
+ + E L + KY Q+A K + + LP +L LHL RF+Y K +
Sbjct: 217 RGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPLILALHLKRFKYMDQLHRYTKLSY 276
Query: 561 RFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYI 605
R F + L + + Y L AV+VH G + GHY+ +
Sbjct: 277 RVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIV 322
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK 227
Y GL N G TCY NS+LQ LYF R+ V ++ +++ L +FH + K
Sbjct: 38 YFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQP-RKKENLLTCLADLFHSIATQKK 96
Query: 228 PVGT---KKLTKSFGWET--LDSFMQHDVQEFL 255
VG KK E D++MQ D EFL
Sbjct: 97 KVGVIPPKKFITRLRKENELFDNYMQQDAHEFL 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,908,122
Number of Sequences: 539616
Number of extensions: 13481596
Number of successful extensions: 29297
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 27934
Number of HSP's gapped (non-prelim): 1029
length of query: 773
length of database: 191,569,459
effective HSP length: 125
effective length of query: 648
effective length of database: 124,117,459
effective search space: 80428113432
effective search space used: 80428113432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)