Query psy17537
Match_columns 773
No_of_seqs 578 out of 3213
Neff 8.4
Searched_HMMs 46136
Date Sat Aug 17 01:04:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5077 Ubiquitin carboxyl-ter 100.0 1E-83 2.2E-88 695.2 17.0 422 266-733 99-539 (1089)
2 KOG1865|consensus 100.0 2.6E-58 5.6E-63 493.2 20.1 296 341-705 100-410 (545)
3 cd02668 Peptidase_C19L A subfa 100.0 9.2E-57 2E-61 486.6 30.5 303 352-703 1-324 (324)
4 cd02659 peptidase_C19C A subfa 100.0 2.9E-56 6.2E-61 486.0 32.7 312 349-706 1-333 (334)
5 cd02664 Peptidase_C19H A subfa 100.0 6.9E-56 1.5E-60 479.5 27.9 304 352-703 1-327 (327)
6 cd02663 Peptidase_C19G A subfa 100.0 1.1E-55 2.4E-60 473.0 27.7 276 352-703 1-300 (300)
7 KOG1863|consensus 100.0 6.3E-57 1.4E-61 546.2 20.0 417 267-730 84-510 (1093)
8 cd02671 Peptidase_C19O A subfa 100.0 1.4E-53 3E-58 459.0 28.2 284 344-703 18-332 (332)
9 cd02657 Peptidase_C19A A subfa 100.0 4E-53 8.6E-58 455.3 27.6 287 352-703 1-305 (305)
10 cd02660 Peptidase_C19D A subfa 100.0 5.2E-53 1.1E-57 459.2 27.6 287 351-703 1-328 (328)
11 cd02667 Peptidase_C19K A subfa 100.0 1.4E-52 3E-57 444.1 23.0 270 352-703 1-279 (279)
12 cd02661 Peptidase_C19E A subfa 100.0 2.8E-51 6.1E-56 440.8 25.4 286 350-703 1-304 (304)
13 KOG1866|consensus 100.0 6.3E-53 1.4E-57 456.6 4.5 325 343-711 88-440 (944)
14 cd02658 Peptidase_C19B A subfa 100.0 5E-50 1.1E-54 432.3 26.1 272 352-703 1-311 (311)
15 cd02669 Peptidase_C19M A subfa 100.0 1.2E-49 2.6E-54 445.4 27.3 290 346-703 115-440 (440)
16 cd02662 Peptidase_C19F A subfa 100.0 1.2E-47 2.6E-52 396.8 22.9 234 352-703 1-240 (240)
17 COG5560 UBP12 Ubiquitin C-term 100.0 1.5E-48 3.2E-53 416.9 12.7 295 347-706 262-823 (823)
18 COG5533 UBP5 Ubiquitin C-termi 100.0 3.5E-46 7.5E-51 368.5 18.0 291 349-705 70-414 (415)
19 cd02665 Peptidase_C19I A subfa 100.0 5.5E-46 1.2E-50 374.4 19.0 220 352-703 1-228 (228)
20 cd02666 Peptidase_C19J A subfa 100.0 5.2E-46 1.1E-50 399.2 19.4 266 350-703 1-343 (343)
21 KOG4598|consensus 100.0 3.3E-47 7.2E-52 407.4 5.9 306 347-727 84-462 (1203)
22 cd02674 Peptidase_C19R A subfa 100.0 5E-44 1.1E-48 368.7 19.7 221 352-703 1-230 (230)
23 KOG1868|consensus 100.0 1.5E-42 3.3E-47 389.9 14.4 301 345-710 296-651 (653)
24 PF00443 UCH: Ubiquitin carbox 100.0 3.8E-41 8.2E-46 354.0 22.6 242 350-702 1-269 (269)
25 cd02673 Peptidase_C19Q A subfa 100.0 1.2E-40 2.6E-45 342.6 19.4 230 353-703 2-245 (245)
26 KOG0944|consensus 100.0 1.4E-40 2.9E-45 359.4 17.2 222 346-575 303-548 (763)
27 KOG1864|consensus 100.0 7.9E-39 1.7E-43 359.7 20.8 283 348-677 230-558 (587)
28 cd02257 Peptidase_C19 Peptidas 100.0 3.1E-38 6.7E-43 327.8 21.6 236 352-703 1-255 (255)
29 KOG1867|consensus 100.0 1E-38 2.2E-43 353.8 15.4 295 347-707 158-486 (492)
30 cd02672 Peptidase_C19P A subfa 100.0 6E-37 1.3E-41 319.4 19.7 219 339-608 4-238 (268)
31 KOG1873|consensus 100.0 7.2E-38 1.6E-42 341.3 7.5 316 345-705 200-877 (877)
32 COG5207 UBP14 Isopeptidase T [ 100.0 9.6E-35 2.1E-39 303.5 16.6 220 350-576 303-539 (749)
33 PF13423 UCH_1: Ubiquitin carb 100.0 7.5E-33 1.6E-37 295.7 21.0 251 351-608 1-280 (295)
34 KOG1870|consensus 100.0 1.3E-33 2.9E-38 335.2 15.1 296 344-706 240-842 (842)
35 cd02670 Peptidase_C19N A subfa 100.0 1.8E-31 3.9E-36 271.4 14.3 214 352-703 1-241 (241)
36 KOG1872|consensus 100.0 1.8E-29 3.9E-34 266.1 4.3 293 349-704 104-468 (473)
37 COG5077 Ubiquitin carboxyl-ter 100.0 6.6E-29 1.4E-33 270.5 6.6 205 58-262 30-287 (1089)
38 KOG1871|consensus 99.9 1.1E-27 2.5E-32 245.8 12.8 295 348-706 26-420 (420)
39 KOG1275|consensus 99.9 4.7E-22 1E-26 221.6 13.9 310 337-702 486-860 (1118)
40 KOG2026|consensus 99.9 2.3E-21 5.1E-26 198.5 14.3 272 345-676 129-429 (442)
41 KOG1863|consensus 99.8 1.1E-20 2.3E-25 230.7 11.5 240 66-313 26-310 (1093)
42 cd03772 MATH_HAUSP Herpesvirus 99.7 1.7E-17 3.6E-22 156.3 8.7 91 66-156 2-136 (137)
43 cd03775 MATH_Ubp21p Ubiquitin- 99.7 5.7E-17 1.2E-21 152.0 7.3 84 68-151 2-134 (134)
44 cd03774 MATH_SPOP Speckle-type 99.5 4.3E-15 9.4E-20 140.3 5.8 87 66-153 4-137 (139)
45 cd03773 MATH_TRIM37 Tripartite 99.5 7.6E-15 1.7E-19 137.4 5.8 85 65-152 3-131 (132)
46 cd02666 Peptidase_C19J A subfa 99.5 1.2E-14 2.6E-19 156.8 7.2 87 168-260 1-110 (343)
47 cd02669 Peptidase_C19M A subfa 99.5 2.8E-14 6.2E-19 160.3 8.6 100 163-262 114-221 (440)
48 cd02658 Peptidase_C19B A subfa 99.5 3.6E-14 7.7E-19 153.2 7.2 94 170-263 1-115 (311)
49 COG5560 UBP12 Ubiquitin C-term 99.5 2.1E-14 4.5E-19 155.8 4.8 101 164-264 261-371 (823)
50 cd02657 Peptidase_C19A A subfa 99.5 4.6E-14 1E-18 151.9 7.5 93 170-262 1-104 (305)
51 cd02664 Peptidase_C19H A subfa 99.5 6.5E-14 1.4E-18 151.9 8.0 92 170-261 1-94 (327)
52 cd02671 Peptidase_C19O A subfa 99.5 1E-13 2.2E-18 149.8 8.0 96 161-261 17-118 (332)
53 cd02668 Peptidase_C19L A subfa 99.4 1.8E-13 4E-18 148.3 8.1 88 170-260 1-100 (324)
54 cd00270 MATH_TRAF_C Tumor Necr 99.4 1.4E-13 3E-18 131.7 5.7 83 67-151 1-149 (149)
55 cd02659 peptidase_C19C A subfa 99.4 1.6E-13 3.6E-18 149.6 6.7 94 167-260 1-98 (334)
56 cd03776 MATH_TRAF6 Tumor Necro 99.4 1.5E-13 3.2E-18 131.0 3.4 83 67-151 1-147 (147)
57 cd02660 Peptidase_C19D A subfa 99.4 4.5E-13 9.8E-18 145.7 7.4 94 169-262 1-102 (328)
58 cd03780 MATH_TRAF5 Tumor Necro 99.3 1E-12 2.3E-17 124.1 4.5 84 67-150 1-147 (148)
59 cd02663 Peptidase_C19G A subfa 99.3 1.6E-12 3.5E-17 139.4 5.8 73 170-261 1-78 (300)
60 cd03777 MATH_TRAF3 Tumor Necro 99.3 2.6E-12 5.6E-17 125.9 6.0 85 66-152 38-185 (186)
61 cd03781 MATH_TRAF4 Tumor Necro 99.3 2.6E-12 5.7E-17 123.2 5.7 83 67-151 1-154 (154)
62 cd02661 Peptidase_C19E A subfa 99.3 3.8E-12 8.3E-17 136.8 6.1 92 169-260 2-98 (304)
63 KOG0944|consensus 99.2 1E-11 2.2E-16 136.4 7.2 98 163-260 302-416 (763)
64 PF00443 UCH: Ubiquitin carbox 99.2 7.6E-12 1.6E-16 131.2 5.6 92 168-259 1-104 (269)
65 cd03779 MATH_TRAF1 Tumor Necro 99.2 7E-12 1.5E-16 117.9 4.5 85 67-151 1-147 (147)
66 cd03771 MATH_Meprin Meprin fam 99.2 1E-11 2.2E-16 119.0 5.5 83 67-151 2-167 (167)
67 KOG1865|consensus 99.2 8.8E-12 1.9E-16 135.7 5.2 95 166-260 106-205 (545)
68 COG5533 UBP5 Ubiquitin C-termi 99.2 1.8E-11 4E-16 122.7 7.0 99 165-263 68-177 (415)
69 cd02667 Peptidase_C19K A subfa 99.2 7.9E-12 1.7E-16 132.6 3.6 63 170-262 1-65 (279)
70 KOG1873|consensus 99.2 1.8E-11 4E-16 135.7 6.4 108 165-272 202-330 (877)
71 cd03778 MATH_TRAF2 Tumor Necro 99.1 4.8E-11 1E-15 113.4 5.5 84 66-150 18-163 (164)
72 cd00121 MATH MATH (meprin and 99.1 1.2E-10 2.5E-15 107.4 6.5 83 67-151 1-126 (126)
73 cd02662 Peptidase_C19F A subfa 98.9 2.8E-10 6.1E-15 117.9 2.6 30 170-199 1-30 (240)
74 PF00917 MATH: MATH domain; I 98.9 5.1E-10 1.1E-14 102.4 1.2 77 73-152 1-119 (119)
75 COG5207 UBP14 Isopeptidase T [ 98.9 2.4E-09 5.3E-14 114.0 5.8 97 167-263 302-409 (749)
76 KOG1868|consensus 98.8 4.2E-09 9E-14 120.3 5.2 102 162-263 295-406 (653)
77 PF15499 Peptidase_C98: Ubiqui 98.5 7E-07 1.5E-11 88.7 10.5 214 353-612 5-244 (275)
78 smart00061 MATH meprin and TRA 98.4 2.1E-07 4.7E-12 81.1 4.4 35 69-103 2-38 (95)
79 KOG1866|consensus 98.3 3E-07 6.6E-12 102.5 3.5 99 161-259 88-193 (944)
80 KOG1867|consensus 98.3 8.6E-07 1.9E-11 99.7 6.5 101 164-264 157-264 (492)
81 cd03783 MATH_Meprin_Alpha Mepr 98.2 8.3E-07 1.8E-11 84.2 4.0 82 67-150 2-166 (167)
82 KOG1870|consensus 98.2 8.5E-07 1.8E-11 106.9 4.5 104 162-265 240-353 (842)
83 cd03782 MATH_Meprin_Beta Mepri 98.1 3E-06 6.5E-11 80.0 4.2 82 67-150 2-166 (167)
84 cd03772 MATH_HAUSP Herpesvirus 98.0 3.2E-06 7E-11 79.5 3.7 82 257-338 55-136 (137)
85 cd02674 Peptidase_C19R A subfa 97.9 2.8E-06 6E-11 87.4 1.1 20 170-189 1-20 (230)
86 KOG1872|consensus 97.9 2.6E-06 5.6E-11 91.7 0.3 91 168-259 105-208 (473)
87 PF13423 UCH_1: Ubiquitin carb 97.8 2.4E-05 5.2E-10 83.7 6.0 90 169-260 1-94 (295)
88 cd02672 Peptidase_C19P A subfa 97.8 2.1E-05 4.5E-10 82.6 4.7 58 161-219 8-65 (268)
89 cd03775 MATH_Ubp21p Ubiquitin- 97.7 9.7E-06 2.1E-10 75.9 1.0 104 228-333 23-134 (134)
90 KOG4598|consensus 97.7 6.3E-06 1.4E-10 91.3 -0.5 72 163-258 82-153 (1203)
91 cd02257 Peptidase_C19 Peptidas 97.4 3.5E-05 7.6E-10 79.3 0.2 20 170-189 1-20 (255)
92 cd02673 Peptidase_C19Q A subfa 97.4 6.7E-05 1.4E-09 77.7 2.1 46 171-262 2-47 (245)
93 KOG1871|consensus 97.2 0.00029 6.2E-09 74.3 4.3 36 166-201 26-61 (420)
94 KOG2026|consensus 97.1 0.00056 1.2E-08 71.9 5.1 97 162-259 128-230 (442)
95 cd02665 Peptidase_C19I A subfa 97.0 0.00022 4.8E-09 72.6 0.5 20 170-189 1-20 (228)
96 KOG1987|consensus 96.6 0.0033 7.2E-08 67.3 6.5 90 68-157 5-130 (297)
97 KOG1864|consensus 96.0 0.0065 1.4E-07 70.0 4.9 98 353-450 34-154 (587)
98 PF00917 MATH: MATH domain; I 95.4 0.0041 8.8E-08 56.4 -0.0 64 265-333 54-118 (119)
99 cd00121 MATH MATH (meprin and 95.3 0.011 2.4E-07 53.7 2.5 66 264-332 59-125 (126)
100 cd03774 MATH_SPOP Speckle-type 95.1 0.0065 1.4E-07 57.1 0.3 96 233-333 39-135 (139)
101 cd03773 MATH_TRIM37 Tripartite 94.7 0.017 3.6E-07 53.8 2.0 65 266-333 64-130 (132)
102 cd00270 MATH_TRAF_C Tumor Necr 92.6 0.098 2.1E-06 49.7 3.2 66 265-332 71-148 (149)
103 cd03778 MATH_TRAF2 Tumor Necro 92.1 0.11 2.4E-06 49.9 2.8 80 251-332 74-163 (164)
104 KOG3556|consensus 90.9 0.12 2.6E-06 56.7 1.8 93 349-444 367-470 (724)
105 KOG1887|consensus 90.7 0.059 1.3E-06 62.7 -0.7 203 430-705 549-790 (806)
106 PF05408 Peptidase_C28: Foot-a 87.6 0.24 5.1E-06 47.5 1.0 23 348-370 31-53 (193)
107 cd03776 MATH_TRAF6 Tumor Necro 86.9 0.38 8.3E-06 45.6 2.0 66 265-332 71-146 (147)
108 KOG1275|consensus 83.9 1.5 3.3E-05 51.7 5.3 74 163-239 494-568 (1118)
109 cd03780 MATH_TRAF5 Tumor Necro 82.3 0.99 2.2E-05 42.8 2.6 67 266-332 72-147 (148)
110 cd03779 MATH_TRAF1 Tumor Necro 82.3 1.1 2.3E-05 42.6 2.7 66 266-332 72-146 (147)
111 cd03781 MATH_TRAF4 Tumor Necro 82.0 1.2 2.7E-05 42.5 3.2 80 251-332 56-153 (154)
112 cd02670 Peptidase_C19N A subfa 80.4 1.1 2.3E-05 46.3 2.2 20 170-189 1-21 (241)
113 smart00061 MATH meprin and TRA 79.1 0.71 1.5E-05 39.4 0.4 43 263-308 53-95 (95)
114 cd03777 MATH_TRAF3 Tumor Necro 71.4 3.1 6.8E-05 41.1 2.7 66 266-333 110-184 (186)
115 PF08715 Viral_protease: Papai 70.1 5.8 0.00013 42.5 4.5 106 341-479 93-199 (320)
116 PF05408 Peptidase_C28: Foot-a 69.8 2.2 4.9E-05 41.0 1.2 36 164-199 29-65 (193)
117 cd03771 MATH_Meprin Meprin fam 53.2 11 0.00023 36.6 2.6 32 299-332 135-166 (167)
118 KOG1987|consensus 42.4 2.5 5.5E-05 45.0 -4.0 72 32-104 107-198 (297)
119 COG3478 Predicted nucleic-acid 34.9 31 0.00068 27.3 2.1 34 514-547 3-39 (68)
120 PF14353 CpXC: CpXC protein 28.8 41 0.00088 30.9 2.3 46 469-524 2-47 (128)
121 PF11164 DUF2948: Protein of u 23.2 3.3E+02 0.0073 25.4 7.0 73 533-605 31-106 (138)
122 TIGR00310 ZPR1_znf ZPR1 zinc f 22.5 1.7E+02 0.0036 29.1 5.3 55 469-541 1-56 (192)
123 PF03367 zf-ZPR1: ZPR1 zinc-fi 21.4 2.3E+02 0.0049 27.3 5.9 57 469-543 2-60 (161)
No 1
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-83 Score=695.19 Aligned_cols=422 Identities=49% Similarity=0.842 Sum_probs=396.4
Q ss_pred CccccccchhhcCCCCCCCCCccccccceeeeecCCCcccccccccccCCCCCC---ccccCceEEEEEee-cCCCCccc
Q psy17537 266 AWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKG---FIKDDSIILEVCVQ-ADAPHGVS 341 (773)
Q Consensus 266 ~ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~~~~~d~G~s~f~~~~dL~d~~~g---~l~ndsi~~e~~v~-~~~p~~~~ 341 (773)
.|.||++|.+.+.+++.|.......++|+|+....||||++|..+..+..|.+| +++++++.+.+.++ ..+|+|+.
T Consensus 99 ~~~ccaqFaf~Is~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVL 178 (1089)
T COG5077 99 YYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVL 178 (1089)
T ss_pred chhhhhheeeecCCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccce
Confidence 699999999999999999888899999999999999999999999999886655 68889888888887 46799999
Q ss_pred c------CCcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhh
Q psy17537 342 W------DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKK 415 (773)
Q Consensus 342 ~------~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~ 415 (773)
| +++..||+|||+|+|+||||||+||+|+.+..||+.++.++++......+++.+||++|..|+.+..|+++.+
T Consensus 179 WHsF~nYnSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grdSValaLQr~Fynlq~~~~PvdTte 258 (1089)
T COG5077 179 WHSFLNYNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGEEPVDTTE 258 (1089)
T ss_pred eecccccccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhccCCCcchHH
Confidence 8 6899999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCC
Q psy17537 416 LTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKK 495 (773)
Q Consensus 416 l~~~l~~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~ 495 (773)
|+++|+|.......|||+|||.+.|.|.|++.++++..++.+..+|-|++++.+.|.+..++|.+.|.|++|.|++++.+
T Consensus 259 ltrsfgWds~dsf~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~~k 338 (1089)
T COG5077 259 LTRSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMK 338 (1089)
T ss_pred hhhhcCcccchHHHHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccc
Q psy17537 496 DILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLK 575 (773)
Q Consensus 496 sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~ 575 (773)
+|++++++|++.|+++|+|+|.|+..|.|+|.|..-|.+|||||.+|||||.||..+..+.|++++.+||++|||.+|++
T Consensus 339 nLqeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld 418 (1089)
T COG5077 339 NLQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLD 418 (1089)
T ss_pred hHHHHHHHhhhheeccCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC----CCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccc
Q psy17537 576 EKG----PTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTE 651 (773)
Q Consensus 576 ~~~----~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (773)
.+. ...+.|.|+||++|.|+++.|||+|++|+..+|+
T Consensus 419 ~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~--------------------------------------- 459 (1089)
T COG5077 419 RDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGR--------------------------------------- 459 (1089)
T ss_pred chhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCCC---------------------------------------
Confidence 753 4458999999999999999999999999877887
Q ss_pred cCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCC-----CcccCCCCceEEEEEEEechhhhhccccCCCCCCccccc
Q psy17537 652 SIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDS-----GLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQEDKI 726 (773)
Q Consensus 652 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~-----~~~~~~~~~aYlLfY~r~~~~~~~~~~~~~~~~~~~~~~ 726 (773)
||+|||++|++++..||++++|||...-- ..+.++..+||||+|-|++..++++.++.+.+||+++++
T Consensus 460 -------WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~ddLlnPV~a~diP~hv~e 532 (1089)
T COG5077 460 -------WYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLDDLLNPVAAVDIPPHVEE 532 (1089)
T ss_pred -------ceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHHhhhCchhhhhCCHHHHH
Confidence 99999999999999999999999975421 123456788999999999999999999999999999998
Q ss_pred ccccCCc
Q psy17537 727 PYLGCND 733 (773)
Q Consensus 727 ~~~~~~~ 733 (773)
.+.++..
T Consensus 533 ~l~eei~ 539 (1089)
T COG5077 533 VLSEEID 539 (1089)
T ss_pred hhCHHHH
Confidence 8877665
No 2
>KOG1865|consensus
Probab=100.00 E-value=2.6e-58 Score=493.15 Aligned_cols=296 Identities=28% Similarity=0.478 Sum_probs=263.8
Q ss_pred ccCCcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCC--CCCCchHHHHHHHHHHHHhhcCC-CCCChhhhh
Q psy17537 341 SWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SDDSNKSVALALQRVFHELQFSD-KPVGTKKLT 417 (773)
Q Consensus 341 ~~~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~--~~~~~~~l~~~L~~lf~~l~~~~-~~~~~~~l~ 417 (773)
.|+.....| +||.|+|||||+||+||||.++|+|.++|+...+. .....-|++|+|+.......... .++.|..++
T Consensus 100 ~~~~~~~~~-~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~ 178 (545)
T KOG1865|consen 100 SSDRPAAVG-AGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGHPISPSQIL 178 (545)
T ss_pred cccccccCC-cceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCCccChHHHH
Confidence 444444444 99999999999999999999999999999874432 22345689999998876665554 499999999
Q ss_pred hhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcC--------CCcCCccccccceeEEEEEEeccCCceeeeEeeceeE
Q psy17537 418 KSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKG--------TCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDI 487 (773)
Q Consensus 418 ~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~--------~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l 487 (773)
..|. ...|..+.|+||||||++++|.|+...-+ ....+.|+++|+|.+.+.++|..|.+++.++|+.++|
T Consensus 179 s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dl 258 (545)
T KOG1865|consen 179 SNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDL 258 (545)
T ss_pred HhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCCcccccccccce
Confidence 8876 36788999999999999999999998732 2234689999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHhcCCceeecCCCcccCCCC-CceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecc
Q psy17537 488 QLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVH-GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYD 566 (773)
Q Consensus 488 ~l~i~~~~sl~~~L~~~~~~E~l~~~n~~~C~~c-~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~ 566 (773)
+|+|....+|.++|++|+++|.|+|+|+|.|++| ++.+|.|+++|.++|+||+||||||+. ++..||+..|.||+
T Consensus 259 tvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~K~I~fPE 334 (545)
T KOG1865|consen 259 TLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKISKPVSFPE 334 (545)
T ss_pred EEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----CcccccccccCCcc
Confidence 9999988999999999999999999999999999 589999999999999999999999994 67899999999999
Q ss_pred ccccccccccCCCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccc
Q psy17537 567 RIELDDFLKEKGPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHA 645 (773)
Q Consensus 567 ~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (773)
.|||.+||..+...+..|.|+|||+|.|. ..+|||+||||. .+|.
T Consensus 335 ~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks-~~g~--------------------------------- 380 (545)
T KOG1865|consen 335 TLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKS-QNGQ--------------------------------- 380 (545)
T ss_pred cccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEc-CCCc---------------------------------
Confidence 99999999988788999999999999999 999999999999 5667
Q ss_pred cccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEe
Q psy17537 646 YLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRE 705 (773)
Q Consensus 646 ~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~ 705 (773)
||++||+.|+.++.+.|+ +..||||||.|.
T Consensus 381 -------------Wy~~DDS~V~~~~~~~VL-----------------sq~AYmLfY~R~ 410 (545)
T KOG1865|consen 381 -------------WYKMDDSEVTQSSIESVL-----------------SQQAYILFYARK 410 (545)
T ss_pred -------------eEEccCceeeecccccee-----------------cccceEEEEEee
Confidence 999999999999999997 567999999997
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.2e-57 Score=486.56 Aligned_cols=303 Identities=33% Similarity=0.570 Sum_probs=263.3
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCCCCC-----------CCchHHHHHHHHHHHHhhcCC-CCCChhhhhhh
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-----------DSNKSVALALQRVFHELQFSD-KPVGTKKLTKS 419 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~-----------~~~~~l~~~L~~lf~~l~~~~-~~~~~~~l~~~ 419 (773)
||.|+||||||||+||+|+++|+||++++....... ....+++++|+.||.+|+.+. .+++|..|+.+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999987654321 123579999999999999775 46899999999
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHHHHhcC---CCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCCC
Q psy17537 420 FGWETLDSFMQHDVQEFLRVLLDKLEIKMKG---TCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKD 496 (773)
Q Consensus 420 l~~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~---~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~s 496 (773)
++ +..++||||+||+..||+.|++++.. ....++|.++|.|++...++|..|+..+.+.++|+.|+|++++..+
T Consensus 81 l~---~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~s 157 (324)
T cd02668 81 LG---LDTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKT 157 (324)
T ss_pred hC---CCCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEecccCC
Confidence 86 56789999999999999999999874 3345689999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccc
Q psy17537 497 ILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLK 575 (773)
Q Consensus 497 l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~ 575 (773)
|+++|+.|+.+|.++|+++|.|+.|+ ++.+.++..|.++|++|+|||+||.|+..++...|+++.|.||+.|||.+|+.
T Consensus 158 l~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~ 237 (324)
T cd02668 158 LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLA 237 (324)
T ss_pred HHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcc
Confidence 99999999999999999999999995 67899999999999999999999999988888999999999999999999987
Q ss_pred cCCCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCC
Q psy17537 576 EKGPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIG 654 (773)
Q Consensus 576 ~~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (773)
.....+..|+|+|||+|.|. +++|||+||+|...+++
T Consensus 238 ~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~------------------------------------------ 275 (324)
T cd02668 238 ESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGE------------------------------------------ 275 (324)
T ss_pred cccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCc------------------------------------------
Confidence 76566789999999999998 89999999999855566
Q ss_pred CCCcEEEEeCccceecCHHHHHHhhcCCCCC----CCCcccCCCCceEEEEEE
Q psy17537 655 EYHPWCKFDDDVVSKCSKDEAVAHNFGGNDE----DSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 655 ~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~----~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|++++.+.+.....++... ...-+...+.+||||||+
T Consensus 276 ----W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 276 ----WYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ----EEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 999999999999999886533222100 001122368899999995
No 4
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-56 Score=486.00 Aligned_cols=312 Identities=54% Similarity=0.896 Sum_probs=273.6
Q ss_pred cccccccCccccchhhHHHHHhccHHHHHHHHcCC-CCCCCCchHHHHHHHHHHHHhhcCCCCCChhh---hhhhcCCCC
Q psy17537 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP-TESDDSNKSVALALQRVFHELQFSDKPVGTKK---LTKSFGWET 424 (773)
Q Consensus 349 g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~-~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~---l~~~l~~~~ 424 (773)
|++||.|+||||||||+||+|+++|+||++++.+. ........++.++|+.||.+|+.+........ ....+.+..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWDS 80 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCCC
Confidence 68999999999999999999999999999999863 22334456799999999999987754332222 245666777
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCCCHHHHHHhc
Q psy17537 425 LDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDY 504 (773)
Q Consensus 425 ~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~ 504 (773)
+..+.||||+||+..||+.|+.+++.....+.|.++|.|.+...++|..|+..+.+.++|+.|+|++++..+++++|+.|
T Consensus 81 ~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~ 160 (334)
T cd02659 81 LNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGKKNLEESLDAY 160 (334)
T ss_pred CCcccchhHHHHHHHHHHHHHHHhccCcccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCCCCCHHHHHHHh
Confidence 88999999999999999999999987777788999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCCcccCCCCCc-eeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccC------
Q psy17537 505 IEPEVLEGDNKYDAGVHGL-QDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEK------ 577 (773)
Q Consensus 505 ~~~E~l~~~n~~~C~~c~~-~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~------ 577 (773)
+.+|.+++.+.|.|+.|+. +.+.++..|.++|++|+|||+||.|+..++...|++..|.||..|||++++...
T Consensus 161 ~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~ 240 (334)
T cd02659 161 VQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEG 240 (334)
T ss_pred cCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccccccc
Confidence 9999999999999999964 489999999999999999999999998888889999999999999999988653
Q ss_pred -----CCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhcccccccccccccccccccccc
Q psy17537 578 -----GPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTES 652 (773)
Q Consensus 578 -----~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (773)
...+..|+|+|||+|.|+.++|||+||+|...++.
T Consensus 241 ~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~---------------------------------------- 280 (334)
T cd02659 241 DSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGK---------------------------------------- 280 (334)
T ss_pred cccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCc----------------------------------------
Confidence 23467899999999999999999999999855666
Q ss_pred CCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCc-----ccCCCCceEEEEEEEec
Q psy17537 653 IGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGL-----TVKHSTNAYMLVYIRES 706 (773)
Q Consensus 653 ~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~-----~~~~~~~aYlLfY~r~~ 706 (773)
|++|||+.|+++++++|++.++||.+....+ ....+.+||||||+|++
T Consensus 281 ------W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 281 ------WYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred ------eEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 9999999999999999999999998653321 22357889999999975
No 5
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.9e-56 Score=479.49 Aligned_cols=304 Identities=31% Similarity=0.453 Sum_probs=250.7
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCC-CCCChhh-hhhhcCCCCCCCCC
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSD-KPVGTKK-LTKSFGWETLDSFM 429 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~-~~~~~~~-l~~~l~~~~~~~~~ 429 (773)
||.|+||||||||+||+|+++|+||+.+++...........+..+|+.+|..|..+. .++.+.. ++.+...+.+..+.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~~~~f~~~~ 80 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASRPPWFTPGS 80 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhcccccCCCC
Confidence 899999999999999999999999999998765433344578899999999988664 3555555 66666556788899
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCCCHHHHHHhcCCcee
Q psy17537 430 QHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEV 509 (773)
Q Consensus 430 QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~E~ 509 (773)
|||||||+..||+.|+ +.|.++|+|++.+.++|..|+..+.+.+.|..|+|+|+ +|+++|+.|+.+|.
T Consensus 81 QqDa~EFl~~lLd~l~---------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~---sl~~~l~~~~~~E~ 148 (327)
T cd02664 81 QQDCSEYLRYLLDRLH---------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP---SVQDLLNYFLSPEK 148 (327)
T ss_pred cCCHHHHHHHHHHHHH---------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC---CHHHHHHHhcCeeE
Confidence 9999999999999998 36889999999999999999999999999999999998 89999999999999
Q ss_pred ecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccC-----------
Q psy17537 510 LEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEK----------- 577 (773)
Q Consensus 510 l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~----------- 577 (773)
++|+++|.|++|+ ++.+.++..|.++|+||+|||+||.|+..++...|+++.|.||..|||..++...
T Consensus 149 l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~ 228 (327)
T cd02664 149 LTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEE 228 (327)
T ss_pred ccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccccccccccccccccc
Confidence 9999999999995 6789999999999999999999999999888889999999999999999886311
Q ss_pred --------CCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhcccccccccccccccccc
Q psy17537 578 --------GPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLH 648 (773)
Q Consensus 578 --------~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (773)
...+..|+|+|||+|.|. +++|||+||+|....+..+. ++-+.+.
T Consensus 229 ~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~--------------------------~~~~~~~ 282 (327)
T cd02664 229 ESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTG--------------------------QECPEPK 282 (327)
T ss_pred cccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCcccccc--------------------------ccccccc
Confidence 124578999999999998 89999999999843111000 0000111
Q ss_pred ccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 649 MTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 649 ~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
.........+||+|||+.|++++.++|....-++ .+.+||||||+
T Consensus 283 ~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~----------~~~~aYlLfY~ 327 (327)
T cd02664 283 DAEENDESKNWYLFNDSRVTFSSFESVQNVTSRF----------PKDTPYILFYE 327 (327)
T ss_pred cccccCCCCCEEEEeCCceEECCHHHHHHhhCCC----------CCCCEEEEEeC
Confidence 1112223346999999999999999997532111 36789999994
No 6
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-55 Score=472.96 Aligned_cols=276 Identities=32% Similarity=0.542 Sum_probs=247.7
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCC---CCChhhhhhhcC--CCCCC
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK---PVGTKKLTKSFG--WETLD 426 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~---~~~~~~l~~~l~--~~~~~ 426 (773)
||.|+||||||||+||+|++ .+++++|+.||..|+.+.. .++|..|+.+++ .+.|.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~ 61 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFD 61 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCC
Confidence 89999999999999999987 4788999999999987643 578999999987 46789
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCC-----------------CcCCccccccceeEEEEEEeccCCceeeeEeeceeEEe
Q psy17537 427 SFMQHDVQEFLRVLLDKLEIKMKGT-----------------CVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQL 489 (773)
Q Consensus 427 ~~~QqDA~Efl~~Ll~~L~~~~~~~-----------------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l 489 (773)
.+.||||+|||..||+.|+++++.. ...+.|.++|+|++.+.++|..|++.+.+.|+|++|+|
T Consensus 62 ~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl 141 (300)
T cd02663 62 NYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSI 141 (300)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEecc
Confidence 9999999999999999999988632 23467899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecccc
Q psy17537 490 NVKGKKDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRI 568 (773)
Q Consensus 490 ~i~~~~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~L 568 (773)
+|++..+|+++|+.|+.+|.++++++|.|+.|+ ++.|.|+..|.++|++|+|||+||.|+...+...|++..|.||..|
T Consensus 142 ~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L 221 (300)
T cd02663 142 DVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLEL 221 (300)
T ss_pred CCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEE
Confidence 999999999999999999999999999999994 7889999999999999999999999998766789999999999999
Q ss_pred ccccccccCCCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccc
Q psy17537 569 ELDDFLKEKGPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYL 647 (773)
Q Consensus 569 dl~~~~~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (773)
+|..+..........|+|+|||+|.|. +++|||+||+|. ++.
T Consensus 222 ~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~----------------------------------- 264 (300)
T cd02663 222 RLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGG----------------------------------- 264 (300)
T ss_pred eccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCc-----------------------------------
Confidence 998876544455689999999999998 899999999998 666
Q ss_pred cccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 648 HMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 648 ~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|+++++++|.+ .+|+.. ...+||||||+
T Consensus 265 -----------W~~fdD~~V~~~~~~~v~~-~~~~~~--------~~~~aYiLfY~ 300 (300)
T cd02663 265 -----------WLLFDDETVEKIDENAVEE-FFGDSP--------NQATAYVLFYQ 300 (300)
T ss_pred -----------EEEEcCCceEEcCHHHHHH-hcCCCC--------CCCceEEEEeC
Confidence 9999999999999998854 456543 47889999995
No 7
>KOG1863|consensus
Probab=100.00 E-value=6.3e-57 Score=546.24 Aligned_cols=417 Identities=50% Similarity=0.800 Sum_probs=382.4
Q ss_pred ccccccchhhcCCCCCCCCCccccccceeeeecCCCcccccccccccCCCCCCccccCceEEEEEeecCCCCcc--ccCC
Q psy17537 267 WSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGV--SWDS 344 (773)
Q Consensus 267 ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v~~~~p~~~--~~~~ 344 (773)
|+|++++.+.++|...+.....+.++|.|.....|||++.|+.+.++..+..|++.++++.++.++....+++. .|++
T Consensus 84 ~s~~~~~~~~v~~~~~~~~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~d~ 163 (1093)
T KOG1863|consen 84 WSCGAQAVLRVKNTIDNLPDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMNPYDS 163 (1093)
T ss_pred eEecchhhhccccCCCCchhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccchhhh
Confidence 99999999999996677777888999999999999999999999999999999999999999999998888888 9999
Q ss_pred cccccc-cccccCccccchhhHHHHHhccHHHHHHHHcCC--CCCCCCchHHHHHHHHHHHHhhcCCC-CCChhhhhhhc
Q psy17537 345 KKHTGY-VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP--TESDDSNKSVALALQRVFHELQFSDK-PVGTKKLTKSF 420 (773)
Q Consensus 345 ~~~~g~-~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~--~~~~~~~~~l~~~L~~lf~~l~~~~~-~~~~~~l~~~l 420 (773)
++.+|+ +||.|+||||||||+||+||+++.||+.+++++ ....++...+..+||+||+.|+.+.. ++.+.++++++
T Consensus 164 k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~ 243 (1093)
T KOG1863|consen 164 KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSL 243 (1093)
T ss_pred hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhh
Confidence 999998 999999999999999999999999999999998 66777788899999999999999987 99999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCCCHHHH
Q psy17537 421 GWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILES 500 (773)
Q Consensus 421 ~~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~ 500 (773)
+|......+|||++||++.|++.|+..+..+...+.|.++|.|.+.+.+.|..|...+.+.+.|+++.+++.+..++.++
T Consensus 244 ~~~~~~~~~QqDvqEf~~~l~d~LE~~~~~~~~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~s 323 (1093)
T KOG1863|consen 244 GWDSNDSFEQQDVQEFLTKLLDWLEDSMIDAKVENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDS 323 (1093)
T ss_pred hcccccHHhhhhHHHHHHHHHHHHHhhccchhhhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccchhhHHHH
Confidence 99887788999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecccccccccccc--C-
Q psy17537 501 FKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKE--K- 577 (773)
Q Consensus 501 L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~--~- 577 (773)
|..|+..|+++|+|+|.+.+.+.+.|.+...+.+||+||.|||+||.|+..++...|+++.++||..|+|.+|+.. .
T Consensus 324 f~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~ 403 (1093)
T KOG1863|consen 324 LHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAE 403 (1093)
T ss_pred HHHhhhHHHhcCCccccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchh
Confidence 9999999999999995555558999999999999999999999999999999999999999999999999999773 1
Q ss_pred C-CCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCC
Q psy17537 578 G-PTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEY 656 (773)
Q Consensus 578 ~-~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (773)
. .....|+|+||++|.|..++|||++|++....++
T Consensus 404 ~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~-------------------------------------------- 439 (1093)
T KOG1863|consen 404 ESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDGK-------------------------------------------- 439 (1093)
T ss_pred hhhccceeccchhhcccccccCccceeeecchhhcc--------------------------------------------
Confidence 1 2225999999999988899999999999766777
Q ss_pred CcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEechhhhhccccCCCCCCccccccccc
Q psy17537 657 HPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQEDKIPYLG 730 (773)
Q Consensus 657 ~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (773)
|++|||..|+.++..+|+..+||+.+..... ......||||+|.|.+..+..+.+++..++|.++......
T Consensus 440 --w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~-~~~~~~~~~lv~~~~s~~~~~~~~v~e~~i~~~l~~~~~~ 510 (1093)
T KOG1863|consen 440 --WVKFDDLVVTVVSEKEALEQNYGTEEIELSS-TADFKNAYMLVYIRDSCESKILKDISESSIPYHLSETLQK 510 (1093)
T ss_pred --ceeccCceeeeccHHHHHHhhCCCcchhhhc-ccccCCcceEEEEecCcHHhhhcccchhhccHHHHHHhhh
Confidence 9999999999999999999999998764322 1123349999999999999999999999999777766553
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-53 Score=459.01 Aligned_cols=284 Identities=26% Similarity=0.455 Sum_probs=238.8
Q ss_pred CcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhh---cC-CCCCChhhhhhh
Q psy17537 344 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQ---FS-DKPVGTKKLTKS 419 (773)
Q Consensus 344 ~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~---~~-~~~~~~~~l~~~ 419 (773)
.+...+++||.|+||||||||+||+|+++|+||+.++++.... .....+|.+|..++ .. .....|..|+..
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-----~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~ 92 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-----SSVEQLQSSFLLNPEKYNDELANQAPRRLLNA 92 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-----CcHHHHHHHHHHHHHHHhhcccccCHHHHHHH
Confidence 3456889999999999999999999999999999998764211 11233444443322 22 234457888888
Q ss_pred cC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCC---
Q psy17537 420 FG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGK--- 494 (773)
Q Consensus 420 l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~--- 494 (773)
++ .+.|..+.||||+||+..||+.|+. .|.++|+|++.+.++|..|++.+.+.|+|++|+|+|+..
T Consensus 93 l~~~~~~f~~~~QQDA~EFl~~LLd~L~~---------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~ 163 (332)
T cd02671 93 LREVNPMYEGYLQHDAQEVLQCILGNIQE---------LVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELS 163 (332)
T ss_pred HHHhccccCCccccCHHHHHHHHHHHHHH---------HHHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCccc
Confidence 76 3678889999999999999999984 577899999999999999999999999999999999854
Q ss_pred ----------------CCHHHHHHhcCCceeecCCCcccCCCC-CceeeeeeeEeccCCceeEEEeeceEecCCC----C
Q psy17537 495 ----------------KDILESFKDYIEPEVLEGDNKYDAGVH-GLQDAEKGVTFENLPPVLHLHLMRFQYDPVT----D 553 (773)
Q Consensus 495 ----------------~sl~~~L~~~~~~E~l~~~n~~~C~~c-~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~----~ 553 (773)
.+|++||+.|+++|.++|+++|.|+.| +++.|.++..|.++|+||+|||+||.++... +
T Consensus 164 ~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~ 243 (332)
T cd02671 164 KSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYG 243 (332)
T ss_pred ccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccC
Confidence 489999999999999999999999999 4789999999999999999999999987432 4
Q ss_pred cceecCceeeeccccccccccccCCCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhcc
Q psy17537 554 CSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLY 632 (773)
Q Consensus 554 ~~~K~~~~v~fP~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~ 632 (773)
...|+++.|.||..|+|.++... .....|+|+|||+|.|. .++|||+||+|
T Consensus 244 ~~~Ki~~~v~fp~~L~~~~~~~~--~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-------------------------- 295 (332)
T cd02671 244 GLSKVNTPLLTPLKLSLEEWSTK--PKNDVYRLFAVVMHSGATISSGHYTAYVR-------------------------- 295 (332)
T ss_pred CceecCccccCccccccccccCC--CCCCeEEEEEEEEEcCCCCCCCeEEEEEE--------------------------
Confidence 57899999999999999877654 34688999999999997 89999999994
Q ss_pred ccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 633 EPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|++++++++.+...|... ...+||||||.
T Consensus 296 --------------------------W~~fdD~~V~~~~~~~~~~~~~~~~~--------~~~~aYiLfY~ 332 (332)
T cd02671 296 --------------------------WLLFDDSEVKVTEEKDFLEALSPNTS--------STSTPYLLFYK 332 (332)
T ss_pred --------------------------EEEEcCcceEEccHHHHHhhcCCCCC--------CCCceEEEEEC
Confidence 99999999999999999765544322 46789999994
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-53 Score=455.25 Aligned_cols=287 Identities=26% Similarity=0.434 Sum_probs=248.0
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCCC---CCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcC--CCCC-
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE---SDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG--WETL- 425 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~--~~~~- 425 (773)
||.|+||||||||+||+|+++|+||+.+++.... ......++.++|++||..|+.+..++.|..++..++ .+.+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 8999999999999999999999999999886543 223456899999999999998888899999888775 2333
Q ss_pred -----CCCCCCcHHHHHHHHHHHHHHHhcC-CCcCCccccccceeEEEEEEeccCC-ceeeeEeeceeEEeecCCC---C
Q psy17537 426 -----DSFMQHDVQEFLRVLLDKLEIKMKG-TCVEGTVPKLFEGKMISFIKCKKVN-YTSSRAETFYDIQLNVKGK---K 495 (773)
Q Consensus 426 -----~~~~QqDA~Efl~~Ll~~L~~~~~~-~~~~~~i~~lF~g~~~~~~~C~~C~-~~s~~~e~f~~l~l~i~~~---~ 495 (773)
..++||||+||+..||+.|+++++. ....+.|.++|+|++.+.++|..|+ ..+.+.++|+.|+|+|+.. .
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~ 160 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVN 160 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCcccc
Confidence 4569999999999999999999874 2345689999999999999999999 7999999999999999876 5
Q ss_pred CHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecccccccccc
Q psy17537 496 DILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFL 574 (773)
Q Consensus 496 sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~ 574 (773)
+|+++|+.++.++.. ..|+.|+ ...+.++..|.++|++|+|||+||.|+...+...|+++.|.||..|||.+|+
T Consensus 161 ~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~ 235 (305)
T cd02657 161 YLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELC 235 (305)
T ss_pred cHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEeccccc
Confidence 899999999976653 3577774 5677899999999999999999999998778889999999999999999998
Q ss_pred ccCCCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccC
Q psy17537 575 KEKGPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESI 653 (773)
Q Consensus 575 ~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (773)
.. +..|+|+|||+|.|. +++|||+||+|...++.
T Consensus 236 ~~----~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~----------------------------------------- 270 (305)
T cd02657 236 TP----SGYYELVAVITHQGRSADSGHYVAWVRRKNDGK----------------------------------------- 270 (305)
T ss_pred CC----CCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCe-----------------------------------------
Confidence 73 478999999999997 89999999999954466
Q ss_pred CCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 654 GEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 654 ~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|+++++++|+....|+ ...+||||||+
T Consensus 271 -----W~~fdD~~V~~~~~~~v~~~~~~~----------~~~~aYiL~Y~ 305 (305)
T cd02657 271 -----WIKFDDDKVSEVTEEDILKLSGGG----------DWHIAYILLYK 305 (305)
T ss_pred -----EEEEECCceEEeCHHHHHhhcCCC----------CCceEEEEEEC
Confidence 999999999999999987544333 24689999995
No 10
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.2e-53 Score=459.20 Aligned_cols=287 Identities=30% Similarity=0.517 Sum_probs=250.8
Q ss_pred cccccCccccchhhHHHHHhccHHHHHHHHcCCCC----CCCCchHHHHHHHHHHHHhhcCC--CCCChhhhhhhcC--C
Q psy17537 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE----SDDSNKSVALALQRVFHELQFSD--KPVGTKKLTKSFG--W 422 (773)
Q Consensus 351 ~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~----~~~~~~~l~~~L~~lf~~l~~~~--~~~~~~~l~~~l~--~ 422 (773)
+||.|+||||||||+||+|+++|+||++++..... ......++.++|++||..|+.+. .++.|..++.++. .
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 69999999999999999999999999999886433 23345689999999999995442 4678888887764 3
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhcCCC--------cCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCC
Q psy17537 423 ETLDSFMQHDVQEFLRVLLDKLEIKMKGTC--------VEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGK 494 (773)
Q Consensus 423 ~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~--------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~ 494 (773)
+.+..+.||||+||+..||+.|++++.... ..++|.++|+|.+.+.++|..|++.+.+.++|+.|+|+++..
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~ 160 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNK 160 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeecccc
Confidence 467888999999999999999999886532 235799999999999999999999999999999999999865
Q ss_pred ---------------CCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceec
Q psy17537 495 ---------------KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKF 558 (773)
Q Consensus 495 ---------------~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~ 558 (773)
.+|+++|+.|+.+|.+++.+ |.|+.|+ ++.+.++..|.++|++|+|||+||.|+.. +...|+
T Consensus 161 ~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~-~~~~K~ 238 (328)
T cd02660 161 STPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLN-KTSRKI 238 (328)
T ss_pred ccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCC-CCCcCC
Confidence 79999999999999999887 9999996 56899999999999999999999999865 567899
Q ss_pred Cceeeecccccccccccc---------CCCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhh
Q psy17537 559 NDRFEFYDRIELDDFLKE---------KGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFF 629 (773)
Q Consensus 559 ~~~v~fP~~Ldl~~~~~~---------~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~ 629 (773)
+..|.||.+|||.+|+.. .......|+|+|||+|.|..++|||+||+|.. ++.
T Consensus 239 ~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~-~~~----------------- 300 (328)
T cd02660 239 DTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQ----------------- 300 (328)
T ss_pred CcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC-CCc-----------------
Confidence 999999999999999874 22456889999999999998899999999983 355
Q ss_pred hccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 630 KLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|+++++++|+ ...||||||+
T Consensus 301 -----------------------------W~~~nD~~V~~~~~~~v~-----------------~~~ayil~Y~ 328 (328)
T cd02660 301 -----------------------------WFKFDDAMITRVSEEEVL-----------------KSQAYLLFYH 328 (328)
T ss_pred -----------------------------EEEEECCeeEECCHHHhc-----------------CCCcEEEEeC
Confidence 999999999999999985 3569999995
No 11
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-52 Score=444.12 Aligned_cols=270 Identities=30% Similarity=0.469 Sum_probs=218.8
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcCCCCCCCCCCC
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQH 431 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~~~~~~~~~Qq 431 (773)
||.|+||||||||+||+|+++|+||++++. .+.. ++..+... .+.+..+.||
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------~P~~-------~~~~l~~~--------------~~~f~~~~Qq 52 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------TPKE-------LFSQVCRK--------------APQFKGYQQQ 52 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------CHHH-------HHHHHHHh--------------hHhhcCCchh
Confidence 899999999999999999999999999986 1112 22222110 2346678999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCC----CCCHHHHHHhcCCc
Q psy17537 432 DVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG----KKDILESFKDYIEP 507 (773)
Q Consensus 432 DA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~----~~sl~~~L~~~~~~ 507 (773)
||+||+..||+.|+ +.|.++|.|++.+.++|..|++.+.+.|+|+.|+|+++. ..+|++||+.|+.+
T Consensus 53 DA~Efl~~lld~l~---------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~ 123 (279)
T cd02667 53 DSHELLRYLLDGLR---------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEV 123 (279)
T ss_pred hHHHHHHHHHHHHH---------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCe
Confidence 99999999999998 368899999999999999999999999999999998753 46899999999999
Q ss_pred eeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccC-----CCCCc
Q psy17537 508 EVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEK-----GPTPA 582 (773)
Q Consensus 508 E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~-----~~~~~ 582 (773)
|.++|+++|.|+.|++ |.++..|.++|++|+|||+||.++... ...|++..|.||..|||.+|+..+ .....
T Consensus 124 E~l~~~~~~~C~~C~~--a~k~~~i~~~P~~Lii~LkRF~~~~~~-~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~ 200 (279)
T cd02667 124 EILEGNNKFACENCTK--AKKQYLISKLPPVLVIHLKRFQQPRSA-NLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSV 200 (279)
T ss_pred eEecCCCcccCCccCc--eeeEeEhhhCCCeEEEEEeccccCccc-CceecCceEeCCCccchhhccCccccccccCCCc
Confidence 9999999999999976 889999999999999999999998643 578999999999999999998762 24567
Q ss_pred ceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEE
Q psy17537 583 TYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKF 662 (773)
Q Consensus 583 ~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~f 662 (773)
.|+|+|||+|.|..++|||+||+|...... +. ++. ... +.+ ..+.....+.||+|
T Consensus 201 ~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~---~~--~~~-------------~~~----~~~---~~~~~~~~~~W~~~ 255 (279)
T cd02667 201 LYRLYGVVEHSGTMRSGHYVAYVKVRPPQQ---RL--SDL-------------TKS----KPA---ADEAGPGSGQWYYI 255 (279)
T ss_pred eEEEEEEEEEeCCCCCCEeEEEEEcCcccc---cc--ccc-------------ccc----ccc---cccCCCCCCcEEEE
Confidence 899999999999999999999999832111 00 000 000 000 00111223469999
Q ss_pred eCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 663 DDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 663 nD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+.|++++.++|+ ..+||||||+
T Consensus 256 dD~~V~~v~~~~v~-----------------~~~aYiLfYe 279 (279)
T cd02667 256 SDSDVREVSLEEVL-----------------KSEAYLLFYE 279 (279)
T ss_pred ECCccEECCHHHhc-----------------cCCcEEEEeC
Confidence 99999999999985 4569999995
No 12
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-51 Score=440.85 Aligned_cols=286 Identities=30% Similarity=0.489 Sum_probs=250.6
Q ss_pred ccccccCccccchhhHHHHHhccHHHHHHHHcCCCC--CCCCchHHHHHHHHHHHHhhcCC-CCCChhhhhhhcC--CCC
Q psy17537 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SDDSNKSVALALQRVFHELQFSD-KPVGTKKLTKSFG--WET 424 (773)
Q Consensus 350 ~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~--~~~~~~~l~~~L~~lf~~l~~~~-~~~~~~~l~~~l~--~~~ 424 (773)
++||.|+||||||||+||+|+++|+||+++++.... ......++.++|+.++..+..+. ..+.|..+..++. ++.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 589999999999999999999999999999864432 22334589999999998887654 4566777666664 456
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCCC-----------cCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCC
Q psy17537 425 LDSFMQHDVQEFLRVLLDKLEIKMKGTC-----------VEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG 493 (773)
Q Consensus 425 ~~~~~QqDA~Efl~~Ll~~L~~~~~~~~-----------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~ 493 (773)
+..+.||||+||+.+||+.|+.++.... ..+.+.++|+|++.+.++|..|+..+.+.+.|+.|+|+++.
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 8889999999999999999998764321 24578999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecccccccc
Q psy17537 494 KKDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDD 572 (773)
Q Consensus 494 ~~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~ 572 (773)
..+|+++|+.++.+|.++++++|.|+.|+ +..+.++..|.++|++|+|||+||.++ ...|+++.|.||..|||.+
T Consensus 161 ~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~f~~~L~l~~ 236 (304)
T cd02661 161 ADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDLSP 236 (304)
T ss_pred CCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----CccccCCeEecCCeechhh
Confidence 89999999999999999999999999995 567889999999999999999999987 4679999999999999999
Q ss_pred ccccCCCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccc
Q psy17537 573 FLKEKGPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTE 651 (773)
Q Consensus 573 ~~~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (773)
++..+......|+|+|||+|.|. .++|||+||+|. .+++
T Consensus 237 ~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~~--------------------------------------- 276 (304)
T cd02661 237 YMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGK--------------------------------------- 276 (304)
T ss_pred ccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC-CCCC---------------------------------------
Confidence 99876667789999999999999 599999999998 4556
Q ss_pred cCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 652 SIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 652 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|+++++++|+ ...||||||.
T Consensus 277 -------W~~~nD~~V~~v~~~~v~-----------------~~~aYil~Y~ 304 (304)
T cd02661 277 -------WYNMDDSKVSPVSIETVL-----------------SQKAYILFYI 304 (304)
T ss_pred -------EEEEeCCeeEECCHHHhc-----------------CCCcEEEEeC
Confidence 999999999999999986 3579999994
No 13
>KOG1866|consensus
Probab=100.00 E-value=6.3e-53 Score=456.59 Aligned_cols=325 Identities=31% Similarity=0.519 Sum_probs=285.0
Q ss_pred CCcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCch----HHHHHHHHHHHHhhcCC-CCCChhhhh
Q psy17537 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNK----SVALALQRVFHELQFSD-KPVGTKKLT 417 (773)
Q Consensus 343 ~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~----~l~~~L~~lf~~l~~~~-~~~~~~~l~ 417 (773)
+++...++|||+|-|+|||||+++|-|+++|.+|..+..+....+.+.- .+++.||.+|..|..+. +.+-|..|.
T Consensus 88 gsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~W 167 (944)
T KOG1866|consen 88 GSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFW 167 (944)
T ss_pred CCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHH
Confidence 4566778999999999999999999999999999987665443222222 38999999999998775 577888899
Q ss_pred hhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCC
Q psy17537 418 KSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKK 495 (773)
Q Consensus 418 ~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~ 495 (773)
+.|+ .......+||||-||+..|+|.+.+.++.-.....+.+.|+|.+...-+|..|-+...+.|+|..|+|.|. ..
T Consensus 168 k~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~-~~ 246 (944)
T KOG1866|consen 168 KQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR-HQ 246 (944)
T ss_pred HHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHhcCccchhhhhccCCcccCccccceeeeeecc-cc
Confidence 8887 36677889999999999999999999999888889999999999999999999999999999999999999 79
Q ss_pred CHHHHHHhcCCceeecCCCcccCCCC-CceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecccccccccc
Q psy17537 496 DILESFKDYIEPEVLEGDNKYDAGVH-GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFL 574 (773)
Q Consensus 496 sl~~~L~~~~~~E~l~~~n~~~C~~c-~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~ 574 (773)
+|+++|++|++.|+++|.|.|+|++| .++...+++.|++||++|.||||||.||.......|-++.+.||.+|||.+|+
T Consensus 247 nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYt 326 (944)
T KOG1866|consen 247 NLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYT 326 (944)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCcee
Confidence 99999999999999999999999999 47778899999999999999999999999999999999999999999999998
Q ss_pred ccC-----------------CCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccc
Q psy17537 575 KEK-----------------GPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRK 637 (773)
Q Consensus 575 ~~~-----------------~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 637 (773)
..+ ...+.+|+|+|||+|+|++++|||++||+....+.
T Consensus 327 vsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~------------------------- 381 (944)
T KOG1866|consen 327 VSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGED------------------------- 381 (944)
T ss_pred ehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhhccCC-------------------------
Confidence 643 14567899999999999999999999998742221
Q ss_pred cccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCC--cc-cCCCCceEEEEEEEechhhhh
Q psy17537 638 QISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSG--LT-VKHSTNAYMLVYIRESELANV 711 (773)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~--~~-~~~~~~aYlLfY~r~~~~~~~ 711 (773)
..+||+|||..|++++..++..+||||...+.. .+ -+++++||||||+|.+..+..
T Consensus 382 ------------------~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~ 440 (944)
T KOG1866|consen 382 ------------------GNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTD 440 (944)
T ss_pred ------------------CCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCcc
Confidence 135999999999999999999999999987542 22 238999999999999875543
No 14
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-50 Score=432.27 Aligned_cols=272 Identities=23% Similarity=0.361 Sum_probs=232.0
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCC----CCCCCchHHHHHHHHHHHHhhcC---------------CCCCC
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT----ESDDSNKSVALALQRVFHELQFS---------------DKPVG 412 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~----~~~~~~~~l~~~L~~lf~~l~~~---------------~~~~~ 412 (773)
||.|+||||||||+||+|+++|+||++++.... ....+..++.++|++||..|... ..++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 899999999999999999999999999976321 22234567999999999988653 23578
Q ss_pred hhhhhhhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEee
Q psy17537 413 TKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLN 490 (773)
Q Consensus 413 ~~~l~~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~ 490 (773)
|..|...++ .+.|..+.||||+||+++||+.|++++... ....+.++|.|.+.+.++|..|+..+.+.+.|..|+|+
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~-~~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~ 159 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN-LGLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLP 159 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc-ccCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeee
Confidence 888888876 467889999999999999999999998642 23467899999999999999999999999999999999
Q ss_pred cCCC--------------CCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcc
Q psy17537 491 VKGK--------------KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCS 555 (773)
Q Consensus 491 i~~~--------------~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~ 555 (773)
++.. .+|+++|+.|+.+|.++ +.|+.|+ ++.+.++..|.+||++|+|||+||.++. ....
T Consensus 160 l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~-~~~~ 234 (311)
T cd02658 160 VPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLE-NWVP 234 (311)
T ss_pred cccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecC-CCce
Confidence 8753 38999999999999987 5688785 6789999999999999999999999974 4457
Q ss_pred eecCceeeeccccccccccccCCCCCcceEEeEEEEeecc-CCCCcEEEEeccCC--CCCCCCCCCCCchhhHHHhhhcc
Q psy17537 556 VKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGD-NHGGHYVVYINPKG--DNKSTALPPFDKDAEVLFFFKLY 632 (773)
Q Consensus 556 ~K~~~~v~fP~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~--~~~~~~~p~~~~~~~~~~~~~~~ 632 (773)
.|+...|.||..| .+..|+|+|||+|.|. .++|||+||+|... ++.
T Consensus 235 ~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~-------------------- 283 (311)
T cd02658 235 KKLDVPIDVPEEL-----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGK-------------------- 283 (311)
T ss_pred EeeccccccCCcC-----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCC--------------------
Confidence 8999999999877 2367999999999998 89999999999842 244
Q ss_pred ccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 633 EPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|++++..+|+ ..+||||||+
T Consensus 284 --------------------------W~~fnD~~V~~~~~~~~~-----------------~~~~YilfY~ 311 (311)
T cd02658 284 --------------------------WVLFNDEKVVASQDPPEM-----------------KKLGYIYFYQ 311 (311)
T ss_pred --------------------------EEEecCceeEECCccccc-----------------CCcceEEEEC
Confidence 999999999999988873 5679999995
No 15
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-49 Score=445.43 Aligned_cols=290 Identities=21% Similarity=0.291 Sum_probs=236.4
Q ss_pred ccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCC--CCCchHHHHHHHHHHHHhhcCC---CCCChhhhhhhc
Q psy17537 346 KHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES--DDSNKSVALALQRVFHELQFSD---KPVGTKKLTKSF 420 (773)
Q Consensus 346 ~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~--~~~~~~l~~~L~~lf~~l~~~~---~~~~~~~l~~~l 420 (773)
..+|++||.|+||||||||+||+|+++|+||++++...... .....++.++|..+++.++... .+++|..++.++
T Consensus 115 ~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l 194 (440)
T cd02669 115 YLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAV 194 (440)
T ss_pred ccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHH
Confidence 35799999999999999999999999999999998754322 1234578999999999998653 578999998887
Q ss_pred C---CCCCCCCCCCcHHHHHHHHHHHHHHHhcC--CCcCCccccccceeEEEEEEeccCC---------------ceeee
Q psy17537 421 G---WETLDSFMQHDVQEFLRVLLDKLEIKMKG--TCVEGTVPKLFEGKMISFIKCKKVN---------------YTSSR 480 (773)
Q Consensus 421 ~---~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~--~~~~~~i~~lF~g~~~~~~~C~~C~---------------~~s~~ 480 (773)
. .+.|..+.||||+||+.+||+.||+++++ ....++|.++|+|++.+.++|..|. ..+.+
T Consensus 195 ~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~ 274 (440)
T cd02669 195 SKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTS 274 (440)
T ss_pred HhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeecccccccccccccccccccceee
Confidence 5 24678899999999999999999999985 3456799999999999999987554 25677
Q ss_pred EeeceeEEeecCCCCCHH-----HHHHhcCCceeecCCCcccCCCC-CceeeeeeeEeccCCceeEEEeeceEecCCCCc
Q psy17537 481 AETFYDIQLNVKGKKDIL-----ESFKDYIEPEVLEGDNKYDAGVH-GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDC 554 (773)
Q Consensus 481 ~e~f~~l~l~i~~~~sl~-----~~L~~~~~~E~l~~~n~~~C~~c-~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~ 554 (773)
.++|++|+|+|+....+. .++..+...|.++ +|.|+.| ..+.+.|+..|.+||++|+||||||.++. ..
T Consensus 275 ~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~--~~ 349 (440)
T cd02669 275 VSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNN--FF 349 (440)
T ss_pred eccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCCcEEEEEEecccCCC--Cc
Confidence 899999999998752211 1111122222232 3666667 45678999999999999999999999874 56
Q ss_pred ceecCceeeeccc-cccccccccC---CCCCcceEEeEEEEeeccC-CCCcEEEEeccCCCCCCCCCCCCCchhhHHHhh
Q psy17537 555 SVKFNDRFEFYDR-IELDDFLKEK---GPTPATYILHAVLVHSGDN-HGGHYVVYINPKGDNKSTALPPFDKDAEVLFFF 629 (773)
Q Consensus 555 ~~K~~~~v~fP~~-Ldl~~~~~~~---~~~~~~Y~L~aVv~H~G~~-~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~ 629 (773)
..|+.+.|.||.. |||.+|+..+ ...+..|+|+|||+|.|.. ++|||+||+|+..+|.
T Consensus 350 ~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~----------------- 412 (440)
T cd02669 350 KEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNK----------------- 412 (440)
T ss_pred cccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCe-----------------
Confidence 7899999999986 8999998642 2456889999999999996 9999999999866677
Q ss_pred hccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 630 KLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|+++++++|+ ...||||||+
T Consensus 413 -----------------------------W~~fdD~~V~~v~~~~v~-----------------~~eaYll~Y~ 440 (440)
T cd02669 413 -----------------------------WFEIQDLNVKEVLPQLIF-----------------LSESYIQIWE 440 (440)
T ss_pred -----------------------------EEEEECCeeeEcCHHHhc-----------------cCCceEEEeC
Confidence 999999999999999985 5679999995
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-47 Score=396.78 Aligned_cols=234 Identities=31% Similarity=0.491 Sum_probs=195.5
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcCCCCCCCCCCC
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQH 431 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~~~~~~~~~Qq 431 (773)
||.|+||||||||+||+|+++|+||+++.+.. .||
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~---------------------------------------------~Qq 35 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL---------------------------------------------EQQ 35 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH---------------------------------------------hhc
Confidence 89999999999999999999999999887522 799
Q ss_pred cHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceee-eEeeceeEEeecCCC-----CCHHHHHHhcC
Q psy17537 432 DVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSS-RAETFYDIQLNVKGK-----KDILESFKDYI 505 (773)
Q Consensus 432 DA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~-~~e~f~~l~l~i~~~-----~sl~~~L~~~~ 505 (773)
||+||+..||+.|+. .+.++|.|++.+.++|..|++.+. +.|+|+.|+|+++.. .+|+++|+.|+
T Consensus 36 Da~EFl~~ll~~l~~---------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~ 106 (240)
T cd02662 36 DAHELFQVLLETLEQ---------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFL 106 (240)
T ss_pred CHHHHHHHHHHHHHH---------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhc
Confidence 999999999999983 577899999999999999999866 599999999999875 58999999999
Q ss_pred CceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccCCCCCcceE
Q psy17537 506 EPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYI 585 (773)
Q Consensus 506 ~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~~~~~~~Y~ 585 (773)
.+|.+++ +.|++| +..|.++|++|+|||+||.|+.. +...|++..|.||+.| ....|+
T Consensus 107 ~~E~l~~---~~C~~C-------~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~~v~fp~~l-----------~~~~Y~ 164 (240)
T cd02662 107 STEIIDD---YKCDRC-------QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSCKVSFPERL-----------PKVLYR 164 (240)
T ss_pred CcccccC---cCCCCC-------eEEeecCCcEEEEEEEEEEEcCC-CceeeeccEEECCCcc-----------CCceEE
Confidence 9999986 789988 67899999999999999999976 7889999999999988 347899
Q ss_pred EeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCc
Q psy17537 586 LHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDD 665 (773)
Q Consensus 586 L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~ 665 (773)
|+|||+|.|..++|||+||+|....+. +++.. ..-+..+ .+.....+||+|||+
T Consensus 165 L~avi~H~G~~~~GHY~~~~k~~~~~~-------~~~~~-----------------~~~~~~~--~~~~~~~~W~~fnD~ 218 (240)
T cd02662 165 LRAVVVHYGSHSSGHYVCYRRKPLFSK-------DKEPG-----------------SFVRMRE--GPSSTSHPWWRISDT 218 (240)
T ss_pred EEEEEEEeccCCCceEEEEEeCCCccc-------ccccc-----------------ccccccc--ccCccCCCEEEEech
Confidence 999999999999999999999842211 00000 0000000 111223459999999
Q ss_pred cceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 666 VVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 666 ~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
.|++++.++|+ ...+||||||+
T Consensus 219 ~V~~v~~~~v~----------------~~~~aY~LfYe 240 (240)
T cd02662 219 TVKEVSESEVL----------------EQKSAYMLFYE 240 (240)
T ss_pred heEEeCHHHHh----------------hCCCEEEEEeC
Confidence 99999999995 14679999995
No 17
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-48 Score=416.88 Aligned_cols=295 Identities=28% Similarity=0.433 Sum_probs=253.1
Q ss_pred cccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCC-------CCCchHHHHHHHHHHHHhhcCC-CCCChhhhhh
Q psy17537 347 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES-------DDSNKSVALALQRVFHELQFSD-KPVGTKKLTK 418 (773)
Q Consensus 347 ~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~l~~~L~~lf~~l~~~~-~~~~~~~l~~ 418 (773)
..|.+||.|+||||||||+||||.|++.+|++++.-..+. -.-...++.+...|..++.... .++.|..+..
T Consensus 262 e~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~ 341 (823)
T COG5560 262 EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKK 341 (823)
T ss_pred hccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHH
Confidence 3588999999999999999999999999999997633211 1123456777777877776554 3567777777
Q ss_pred hcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCC--------------------------------CcCCcccccccee
Q psy17537 419 SFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGT--------------------------------CVEGTVPKLFEGK 464 (773)
Q Consensus 419 ~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~--------------------------------~~~~~i~~lF~g~ 464 (773)
.+| +..|.++.|||.+||+.+|||.||+.++.. ...++|.++|.|.
T Consensus 342 tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgm 421 (823)
T COG5560 342 TIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGM 421 (823)
T ss_pred HHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 666 477999999999999999999999998731 1237999999999
Q ss_pred EEEEEEeccCCceeeeEeeceeEEeecCCCC-------------------------------------------------
Q psy17537 465 MISFIKCKKVNYTSSRAETFYDIQLNVKGKK------------------------------------------------- 495 (773)
Q Consensus 465 ~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~------------------------------------------------- 495 (773)
+++++.|+.|+.++.++++|++|+||+|-..
T Consensus 422 yKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v 501 (823)
T COG5560 422 YKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKV 501 (823)
T ss_pred hhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeE
Confidence 9999999999999999999999999985210
Q ss_pred --------------------------------------------------------------------------------
Q psy17537 496 -------------------------------------------------------------------------------- 495 (773)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (773)
T Consensus 502 ~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE 581 (823)
T COG5560 502 MCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKE 581 (823)
T ss_pred EEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy17537 496 -------------------------------------------------------------------------------- 495 (773)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (773)
T Consensus 582 ~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~ 661 (823)
T COG5560 582 FEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDP 661 (823)
T ss_pred HHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCc
Confidence
Q ss_pred --------------CHHHHHHhcCCceeecCCCcccCCCC-CceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCc
Q psy17537 496 --------------DILESFKDYIEPEVLEGDNKYDAGVH-GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFND 560 (773)
Q Consensus 496 --------------sl~~~L~~~~~~E~l~~~n~~~C~~c-~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~ 560 (773)
+|++||..|.++|.|.-...|+|+.| .+..|+|++.|+++|.+|+||||||+++ ...+.|+.+
T Consensus 662 lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~--rsfrdKidd 739 (823)
T COG5560 662 LWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSV--RSFRDKIDD 739 (823)
T ss_pred cchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhc--ccchhhhhh
Confidence 69999999999999999999999999 5889999999999999999999999965 456789999
Q ss_pred eeeec-cccccccccccCCCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccc
Q psy17537 561 RFEFY-DRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQI 639 (773)
Q Consensus 561 ~v~fP-~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 639 (773)
-|+|| ..|||+.+...-.+....|+|+||=.|+|...+|||+||+|+..++.
T Consensus 740 lVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n~~--------------------------- 792 (823)
T COG5560 740 LVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNG--------------------------- 792 (823)
T ss_pred hhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecccCCc---------------------------
Confidence 99999 78999988766545558899999999999999999999999988877
Q ss_pred cccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEec
Q psy17537 640 SYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRES 706 (773)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~ 706 (773)
||+|||++|++|.+++.+ ...||+|||+|++
T Consensus 793 -------------------wy~fdDsritevdped~v-----------------tssaYvLFyrrk~ 823 (823)
T COG5560 793 -------------------WYLFDDSRITEVDPEDSV-----------------TSSAYVLFYRRKS 823 (823)
T ss_pred -------------------eEEecCccccccCccccc-----------------cceeEEEEEEecC
Confidence 999999999999998875 5679999999963
No 18
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-46 Score=368.45 Aligned_cols=291 Identities=25% Similarity=0.405 Sum_probs=222.1
Q ss_pred cccccccCccccchhhHHHHHhccHHHHHHHHc------CCCCC--CCCchHHHHHHHHHHHHhh-cCCCCCChhhhhhh
Q psy17537 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYK------MPTES--DDSNKSVALALQRVFHELQ-FSDKPVGTKKLTKS 419 (773)
Q Consensus 349 g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~------~~~~~--~~~~~~l~~~L~~lf~~l~-~~~~~~~~~~l~~~ 419 (773)
.++||.|.|||||||++||||+.+..+...++. ++.+. ..+.......+.-|...+. .+.+.++|.+|+..
T Consensus 70 ~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~i 149 (415)
T COG5533 70 PPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFIDI 149 (415)
T ss_pred CCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHHH
Confidence 459999999999999999999999999874432 22221 1112233333444443332 34457888888887
Q ss_pred cC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCc-----------------------------------CCccccccc
Q psy17537 420 FG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCV-----------------------------------EGTVPKLFE 462 (773)
Q Consensus 420 l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~-----------------------------------~~~i~~lF~ 462 (773)
++ .+.|....|||+|||+.++||.||+++++... .++|.++|.
T Consensus 150 ~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f~ 229 (415)
T COG5533 150 LSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFF 229 (415)
T ss_pred HccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHHh
Confidence 76 46788889999999999999999999875321 257889999
Q ss_pred eeEEEEEEeccCCceeeeEeeceeEEeecCCCC--CHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCcee
Q psy17537 463 GKMISFIKCKKVNYTSSRAETFYDIQLNVKGKK--DILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVL 539 (773)
Q Consensus 463 g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~--sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL 539 (773)
|+..++++|..|+++|++...|..|.+|++... .|++|+++|.++|.++|+..|.|++|+ ++.+.|++.|.++|++|
T Consensus 230 gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~L 309 (415)
T COG5533 230 GQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVL 309 (415)
T ss_pred hhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceE
Confidence 999999999999999999999999999998643 599999999999999999999999995 67889999999999999
Q ss_pred EEEeeceEecCCCCcceecCcee----eeccccccccccc-cCCCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCC
Q psy17537 540 HLHLMRFQYDPVTDCSVKFNDRF----EFYDRIELDDFLK-EKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKST 614 (773)
Q Consensus 540 ~i~L~Rf~~d~~~~~~~K~~~~v----~fP~~Ldl~~~~~-~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~ 614 (773)
+||++||...- +...|+.... .+|.+..+.+... ..+-.|..|+|+|||||.|++.+|||+++|+. .+.
T Consensus 310 II~i~RF~i~V--~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~--~~~-- 383 (415)
T COG5533 310 IIHISRFHISV--MGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKR--SGT-- 383 (415)
T ss_pred EEEeeeeeEEe--ecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecceecCceeEEeeee--cCc--
Confidence 99999998431 2233333221 1222222221111 12345689999999999999999999999998 455
Q ss_pred CCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCC
Q psy17537 615 ALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHS 694 (773)
Q Consensus 615 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~ 694 (773)
|+.|||+.|++++-..- ...
T Consensus 384 --------------------------------------------W~~~dDs~vr~~~~~t~----------------~~~ 403 (415)
T COG5533 384 --------------------------------------------WNVYDDSQVRKGSRTTS----------------GSH 403 (415)
T ss_pred --------------------------------------------eEEechhheeeccceec----------------ccC
Confidence 99999999999864221 135
Q ss_pred CceEEEEEEEe
Q psy17537 695 TNAYMLVYIRE 705 (773)
Q Consensus 695 ~~aYlLfY~r~ 705 (773)
.++|+|||+|.
T Consensus 404 pSsYilFY~r~ 414 (415)
T COG5533 404 PSSYILFYTRS 414 (415)
T ss_pred CcceEEEEEec
Confidence 57999999985
No 19
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.5e-46 Score=374.42 Aligned_cols=220 Identities=33% Similarity=0.529 Sum_probs=194.0
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcCCCCCCCCCCC
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQH 431 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~~~~~~~~~Qq 431 (773)
||.|.|||||+|++.|+|+. .||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------~QQ 23 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS---------------------------------------------------------QQQ 23 (228)
T ss_pred CccccCcchhHHHHHHHHHH---------------------------------------------------------HHH
Confidence 89999999999999999976 699
Q ss_pred cHHHHHHHHHHHHHHHhcCC--------CcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCCCHHHHHHh
Q psy17537 432 DVQEFLRVLLDKLEIKMKGT--------CVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKD 503 (773)
Q Consensus 432 DA~Efl~~Ll~~L~~~~~~~--------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L~~ 503 (773)
||+||++.||+.|++.++.. ...+.|.++|.|++.+.+.| |+..+.+.|+|++|+|+|.+..+|++||+.
T Consensus 24 Da~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~~L~e~L~~ 101 (228)
T cd02665 24 DVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYGNLHECLEA 101 (228)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCCCHHHHHHH
Confidence 99999999999999999743 23568999999999976666 778899999999999999999999999999
Q ss_pred cCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccCCCCCcc
Q psy17537 504 YIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPAT 583 (773)
Q Consensus 504 ~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~~~~~~~ 583 (773)
++.+|.+++++++. ...+.++..|.+||++|+|||+||.|+. +...|+++.|+||..| ....
T Consensus 102 ~~~ee~l~~~~~~~-----~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~v~FP~~l-----------~~~~ 163 (228)
T cd02665 102 AMFEGEVELLPSDH-----SVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQII-----------QQVP 163 (228)
T ss_pred hhhhcccccccccc-----hhhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEEEEeeCcc-----------CCce
Confidence 99999998754332 2345667789999999999999999986 5678999999999887 2357
Q ss_pred eEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEe
Q psy17537 584 YILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFD 663 (773)
Q Consensus 584 Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fn 663 (773)
|+|+|||+|.|.+++|||+||+|...++. ||+||
T Consensus 164 Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~----------------------------------------------W~~fd 197 (228)
T cd02665 164 YELHAVLVHEGQANAGHYWAYIYKQSRQE----------------------------------------------WEKYN 197 (228)
T ss_pred eEEEEEEEecCCCCCCEEEEEEEcCCCCE----------------------------------------------EEEEE
Confidence 99999999999999999999999855666 99999
Q ss_pred CccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 664 DDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 664 D~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
|+.|+++++++|+..+|||.+ +.+||||||+
T Consensus 198 D~~V~~~~~~~v~~~~fGg~~---------~~~AYiLfYv 228 (228)
T cd02665 198 DISVTESSWEEVERDSFGGGR---------NPSAYCLMYI 228 (228)
T ss_pred CCeeEEcCHHHHhhhccCCCC---------CCceEEEEEC
Confidence 999999999999999999964 5789999995
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.2e-46 Score=399.19 Aligned_cols=266 Identities=26% Similarity=0.460 Sum_probs=224.1
Q ss_pred ccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCC--------------C--------CchHHHHHHHHHHHHhhcC
Q psy17537 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD--------------D--------SNKSVALALQRVFHELQFS 407 (773)
Q Consensus 350 ~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~--------------~--------~~~~l~~~L~~lf~~l~~~ 407 (773)
|+||.|+||||||||+||+|+++|+||+++++.+.... . ...+++.+|++||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999998752211 0 1236899999999999988
Q ss_pred C-CCCChhhhhhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCc-------------CCccccccceeEEEEEEecc
Q psy17537 408 D-KPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCV-------------EGTVPKLFEGKMISFIKCKK 473 (773)
Q Consensus 408 ~-~~~~~~~l~~~l~~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~-------------~~~i~~lF~g~~~~~~~C~~ 473 (773)
. +.+.|..++..+.+ .||||+||+..||++|+.+++.... .++|.++|.|++.+.++|..
T Consensus 81 ~~~~v~P~~~l~~l~~------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~~ 154 (343)
T cd02666 81 NTRSVTPSKELAYLAL------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPES 154 (343)
T ss_pred CCCccCcHHHHHhccc------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEecc
Confidence 7 67889998887653 8999999999999999999976543 45799999999999999999
Q ss_pred CC---ceeeeEeeceeEEeecCC----------CCCHHHHHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeE
Q psy17537 474 VN---YTSSRAETFYDIQLNVKG----------KKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLH 540 (773)
Q Consensus 474 C~---~~s~~~e~f~~l~l~i~~----------~~sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~ 540 (773)
|+ ..+.+.|+|++|+|+|+. ..+|.+||+.|+..|. |.++|+||.
T Consensus 155 ~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~----------------------~~~~P~vl~ 212 (343)
T cd02666 155 MGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS----------------------LTKLPQRSQ 212 (343)
T ss_pred cCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh----------------------hccCCHHHH
Confidence 97 788999999999999984 6899999999998666 789999999
Q ss_pred EEeeceEecCCCCcceecCceeeeccccccccccccC----------------------------CCCCcceEEeEEEEe
Q psy17537 541 LHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEK----------------------------GPTPATYILHAVLVH 592 (773)
Q Consensus 541 i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~----------------------------~~~~~~Y~L~aVv~H 592 (773)
|||+ ++.......+.+++.++|..++...++... +.....|+|+|||+|
T Consensus 213 ~qlq---~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H 289 (343)
T cd02666 213 VQAQ---LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIH 289 (343)
T ss_pred HHHh---hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEe
Confidence 9999 444445566777777777766655554321 135788999999999
Q ss_pred eccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCH
Q psy17537 593 SGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSK 672 (773)
Q Consensus 593 ~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~ 672 (773)
.|..++|||++|+|+..++. |++|||..|++++.
T Consensus 290 ~G~~~~GHY~~~~~~~~~~~----------------------------------------------W~~~dD~~V~~v~~ 323 (343)
T cd02666 290 RGEASSGHYWVYIKDFEENV----------------------------------------------WRKYNDETVTVVPA 323 (343)
T ss_pred ecCCCCCeEEEEEEECCCCe----------------------------------------------EEEEECCeeEEecH
Confidence 99999999999999865555 99999999999999
Q ss_pred HHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 673 DEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 673 ~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
++++...+|+ ..+||||+|+
T Consensus 324 ~ev~~~~~~~-----------~~~pY~l~Yv 343 (343)
T cd02666 324 SEVFLFTLGN-----------TATPYFLVYV 343 (343)
T ss_pred HHHhhcccCC-----------CCCCEEEEeC
Confidence 9999887775 5679999995
No 21
>KOG4598|consensus
Probab=100.00 E-value=3.3e-47 Score=407.44 Aligned_cols=306 Identities=33% Similarity=0.571 Sum_probs=272.7
Q ss_pred cccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcCCCCCC
Q psy17537 347 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLD 426 (773)
Q Consensus 347 ~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~~~~~~ 426 (773)
..+++||.|+..|||+|+.+|+|+..|.+++.++. +...++.+.++.++|+|..-.
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yt------------------------s~~~~~et~dlt~sfgw~s~e 139 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYT------------------------SENDSLETKDLTQSFGWTSNE 139 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhC------------------------CCcccccchhhHhhcCCCcch
Confidence 45789999999999999999999999999998872 123356778899999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCC------CCCHHHH
Q psy17537 427 SFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG------KKDILES 500 (773)
Q Consensus 427 ~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~------~~sl~~~ 500 (773)
.++|||+||+.+.++|.|+-..+++.....|.+++.|++...+.|+.|+.++.+.+.|++|+|++.. ..+++++
T Consensus 140 a~~qhdiqelcr~mfdalehk~k~t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieea 219 (1203)
T KOG4598|consen 140 AYDQHDVQELCRLMFDALEHKWKGTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEA 219 (1203)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcCchHHHHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999964 3689999
Q ss_pred HHhcCCceeecCCCcccCCCC-CceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccC--
Q psy17537 501 FKDYIEPEVLEGDNKYDAGVH-GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEK-- 577 (773)
Q Consensus 501 L~~~~~~E~l~~~n~~~C~~c-~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~-- 577 (773)
|..|.++|.++|.|+|-|++| ++++|.|...|+.+|-+|.||||||.||..++.+.|+++++.||..|||..|+...
T Consensus 220 l~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~ 299 (1203)
T KOG4598|consen 220 LTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKR 299 (1203)
T ss_pred HHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccC
Confidence 999999999999999999999 58899999999999999999999999999999999999999999999999997642
Q ss_pred ----------------------------------------------------------------CCCCcceEEeEEEEee
Q psy17537 578 ----------------------------------------------------------------GPTPATYILHAVLVHS 593 (773)
Q Consensus 578 ----------------------------------------------------------------~~~~~~Y~L~aVv~H~ 593 (773)
..++..|+|+||.+|.
T Consensus 300 s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihs 379 (1203)
T KOG4598|consen 300 STTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHS 379 (1203)
T ss_pred CcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheec
Confidence 1456789999999999
Q ss_pred ccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHH
Q psy17537 594 GDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKD 673 (773)
Q Consensus 594 G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~ 673 (773)
|.+.+|||+||||+..++. ||.|||.+|+-++.+
T Consensus 380 g~a~gghy~ayik~~d~~~----------------------------------------------w~~fnd~~v~~~t~~ 413 (1203)
T KOG4598|consen 380 GNAAGGHYFAYIKNLDQDR----------------------------------------------WYVFNDTRVDFATPL 413 (1203)
T ss_pred CCCCCceeeeeecccCcCc----------------------------------------------eEEecCccccccCHH
Confidence 9999999999999977766 999999999999998
Q ss_pred HHHHhhcCCCCCCCCcccCCCCceEEEEEEEechhhhhccccCCCCCCcccccc
Q psy17537 674 EAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQEDKIP 727 (773)
Q Consensus 674 ~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~~~~~~~~~~~~~~~~~~~~~~ 727 (773)
++ +..|||....-. .++.+||||+|+|.+...+.+. +...++|++++..
T Consensus 414 ~i-~~sfgg~~~~~~---~s~tnaymlmyr~id~krn~~~-~~~~~~p~hik~~ 462 (1203)
T KOG4598|consen 414 EI-EKSFGGHPSGWN---QSNTNAYMLMYRRIDPKRNARF-ILSNQLPQHIKDS 462 (1203)
T ss_pred HH-HHhhCCCCCCcc---ccCcchhhhhhhhcCcccccce-eecccchHHHHHH
Confidence 86 678999765221 3678999999999886554332 3456888888753
No 22
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-44 Score=368.67 Aligned_cols=221 Identities=35% Similarity=0.589 Sum_probs=200.6
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcCCCCCCCCCCC
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQH 431 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~~~~~~~~~Qq 431 (773)
||.|.||+||+||+||+|.+ .||
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~---------------------------------------------------------~Qq 23 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA---------------------------------------------------------DQQ 23 (230)
T ss_pred CccccCcchhhhHHHHHHHH---------------------------------------------------------hhh
Confidence 89999999999999999988 799
Q ss_pred cHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCC------CHHHHHHhcC
Q psy17537 432 DVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKK------DILESFKDYI 505 (773)
Q Consensus 432 DA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~------sl~~~L~~~~ 505 (773)
||+||+.+||+.|+ +.+.++|+|++...++|..|+..+.+.+.|..|+|+++... +|+++|+.++
T Consensus 24 Da~Ef~~~ll~~l~---------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~ 94 (230)
T cd02674 24 DAQEFLLFLLDGLH---------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFT 94 (230)
T ss_pred hHHHHHHHHHHHHh---------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHhc
Confidence 99999999999998 36889999999999999999999999999999999998654 9999999999
Q ss_pred CceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeec-ccccccccccc-CCCCCc
Q psy17537 506 EPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFY-DRIELDDFLKE-KGPTPA 582 (773)
Q Consensus 506 ~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP-~~Ldl~~~~~~-~~~~~~ 582 (773)
.+|.+++.+++.|++|+ .+.+.++..+.++|++|+|||+||.++. +...|+...|.|| +.|||.+|+.. ......
T Consensus 95 ~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~ 172 (230)
T cd02674 95 KEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPF 172 (230)
T ss_pred CccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC--CCcccCCceEeccccccccccccCcccCCCCc
Confidence 99999999999999994 6788999999999999999999999986 5678999999999 46899988532 234567
Q ss_pred ceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEE
Q psy17537 583 TYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKF 662 (773)
Q Consensus 583 ~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~f 662 (773)
.|+|+|||+|.|..++|||+||+|...++. |++|
T Consensus 173 ~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~----------------------------------------------W~~f 206 (230)
T cd02674 173 KYDLYAVVNHYGSLNGGHYTAYCKNNETND----------------------------------------------WYKF 206 (230)
T ss_pred eEEEEEEEEeeCCCCCcEEEEEEECCCCCc----------------------------------------------eEEE
Confidence 899999999999999999999999955466 9999
Q ss_pred eCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 663 DDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 663 nD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+.|++++.+++ ...+||||||+
T Consensus 207 nD~~V~~i~~~~~-----------------~~~~~YlL~Y~ 230 (230)
T cd02674 207 DDSRVTKVSESSV-----------------VSSSAYILFYE 230 (230)
T ss_pred cCCeEEEcCHHHc-----------------cCCCceEEEeC
Confidence 9999999999987 25789999995
No 23
>KOG1868|consensus
Probab=100.00 E-value=1.5e-42 Score=389.88 Aligned_cols=301 Identities=30% Similarity=0.501 Sum_probs=248.2
Q ss_pred cccccccccccCccccchhhHHHHHhccHHHHHHHHcC------CCCCCCCchHHHHHHHHHHHHhhcC--CCCCChhhh
Q psy17537 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM------PTESDDSNKSVALALQRVFHELQFS--DKPVGTKKL 416 (773)
Q Consensus 345 ~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~------~~~~~~~~~~l~~~L~~lf~~l~~~--~~~~~~~~l 416 (773)
....+.+||.|+|||||||++||||+.++.||..++.. ..........+..++..++..++.. ..++.|..+
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f 375 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRF 375 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHH
Confidence 34567899999999999999999999999999665543 2122333446677777777666655 346788888
Q ss_pred hhhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCc-----------------------------------CCcccc
Q psy17537 417 TKSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCV-----------------------------------EGTVPK 459 (773)
Q Consensus 417 ~~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~-----------------------------------~~~i~~ 459 (773)
+..++ ...+.++.|||+|||+.++++.||++++.... ++.|.+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 88887 46677789999999999999999999865211 124789
Q ss_pred ccceeEEEEEEeccCCceeeeEeeceeEEeecCCC------CCHHHHHHhcCCceeecCCCcccCCCCCceeee---eee
Q psy17537 460 LFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGK------KDILESFKDYIEPEVLEGDNKYDAGVHGLQDAE---KGV 530 (773)
Q Consensus 460 lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~------~sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~---k~~ 530 (773)
+|.|++++.++|..|++.+.++++|++++|+|+.. .+|.+|++.|+..|.+++++.|.|+.|++.... |+.
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~ 535 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKL 535 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCccccccccee
Confidence 99999999999999999999999999999999743 459999999999999999999999999755444 899
Q ss_pred EeccCCceeEEEeeceEecCCCCcceecCceeeecc-ccccccccccCCCCCcceEEeEEEEeeccCCCCcEEEEeccCC
Q psy17537 531 TFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYD-RIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKG 609 (773)
Q Consensus 531 ~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~ 609 (773)
.|.+||++|++||+||.++. +...|....|.||. ..++.++.......+..|+|+|||+|.|+..+|||+||++...
T Consensus 536 ~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~ 613 (653)
T KOG1868|consen 536 TILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNE 613 (653)
T ss_pred eeecCCHHHHHHHHHhccCc--ccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCcccCCceEEEEeecC
Confidence 99999999999999999875 45678888899995 4566656666666677899999999999999999999999855
Q ss_pred CCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCc
Q psy17537 610 DNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGL 689 (773)
Q Consensus 610 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~ 689 (773)
.+. |+.|||+.|+.++..++
T Consensus 614 ~~~----------------------------------------------W~~fdDs~Vs~~~~~~~-------------- 633 (653)
T KOG1868|consen 614 KQR----------------------------------------------WFTFDDSEVSPISETDV-------------- 633 (653)
T ss_pred CCc----------------------------------------------eEEecCeeeeccccccc--------------
Confidence 555 99999999998877665
Q ss_pred ccCCCCceEEEEEEEechhhh
Q psy17537 690 TVKHSTNAYMLVYIRESELAN 710 (773)
Q Consensus 690 ~~~~~~~aYlLfY~r~~~~~~ 710 (773)
....||||||+|....++
T Consensus 634 ---~~s~aYIlFY~~~~~~~~ 651 (653)
T KOG1868|consen 634 ---GSSSAYILFYERLGIFEE 651 (653)
T ss_pred ---cCCCceEEEeecCCcccc
Confidence 257799999999876543
No 24
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=3.8e-41 Score=354.00 Aligned_cols=242 Identities=33% Similarity=0.591 Sum_probs=201.5
Q ss_pred ccccccCccccchhhHHHHHhccHHHHHHHHcC-------CCCCCCCchHHHHHHHHHHHHhhcC---CCCCChhhhhhh
Q psy17537 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM-------PTESDDSNKSVALALQRVFHELQFS---DKPVGTKKLTKS 419 (773)
Q Consensus 350 ~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~-------~~~~~~~~~~l~~~L~~lf~~l~~~---~~~~~~~~l~~~ 419 (773)
++||.|.||||||||+||+|+++|+|++++++. .........++.++|+.||..|+.. ...+.+..+...
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999975 1222333457999999999999987 346777888777
Q ss_pred cC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC-----------cCCccccccceeEEEEEEeccCCceeeeEeecee
Q psy17537 420 FG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTC-----------VEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYD 486 (773)
Q Consensus 420 l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~-----------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~ 486 (773)
++ ...+..+.||||+||+..||+.|++++.... ..+.+.++|.+++...+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 75 2447789999999999999999999987632 3568899999999999999999877
Q ss_pred EEeecCCCCCHHHHHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeec-
Q psy17537 487 IQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFY- 565 (773)
Q Consensus 487 l~l~i~~~~sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP- 565 (773)
...+.++|++|+|+|+||.|+..++...|+...|.||
T Consensus 152 ------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~ 189 (269)
T PF00443_consen 152 ------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPL 189 (269)
T ss_dssp ------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--S
T ss_pred ------------------------------------------ccccccccceeeeccccceeccccccccccccccccCc
Confidence 5578899999999999999998888899999999999
Q ss_pred cccccccccccCCC---CCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhcccccccccccc
Q psy17537 566 DRIELDDFLKEKGP---TPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYL 642 (773)
Q Consensus 566 ~~Ldl~~~~~~~~~---~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (773)
+.|||++++..+.. ....|+|+|||+|.|..++|||+||+|...++.
T Consensus 190 ~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~------------------------------ 239 (269)
T PF00443_consen 190 EELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGK------------------------------ 239 (269)
T ss_dssp SEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTE------------------------------
T ss_pred hhhhhhhhhccccccccccceeeehhhhccccccccceEEEeeccccCCe------------------------------
Confidence 79999999887542 358999999999999889999999999955555
Q ss_pred ccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEE
Q psy17537 643 GHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVY 702 (773)
Q Consensus 643 ~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY 702 (773)
|++|||+.|+++++++|+..+ ..+||||||
T Consensus 240 ----------------W~~~dD~~v~~~~~~~v~~~~--------------~~~~yll~Y 269 (269)
T PF00443_consen 240 ----------------WYKFDDSRVTEVSWEEVIKSS--------------NSTAYLLFY 269 (269)
T ss_dssp ----------------EEEEETTEEEEESHHHHCCGG--------------STCEEEEEE
T ss_pred ----------------EEEeeCCceEECCHHHHhhcc--------------CCceEEEeC
Confidence 999999999999999996422 478999999
No 25
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-40 Score=342.60 Aligned_cols=230 Identities=21% Similarity=0.308 Sum_probs=185.3
Q ss_pred cccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcCCCCCCCCCCCc
Q psy17537 353 LKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHD 432 (773)
Q Consensus 353 L~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~~~~~~~~~QqD 432 (773)
|.|.||.||+||.+|+|..+-.. .+.|..+.|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~----------------------------------------------~~~F~~~~QQD 35 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSIGKI----------------------------------------------NTEFDNDDQQD 35 (245)
T ss_pred ceecCCeeeehhHHHHHHHHhhh----------------------------------------------hhhcCCCchhh
Confidence 78999999999999998433221 13477889999
Q ss_pred HHHHHHHHHHHHHHHhcCCC----------cCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCC--CCHHHH
Q psy17537 433 VQEFLRVLLDKLEIKMKGTC----------VEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGK--KDILES 500 (773)
Q Consensus 433 A~Efl~~Ll~~L~~~~~~~~----------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~--~sl~~~ 500 (773)
|||||++||+.|++++.... ......++|.|++.+.++|..|++++.+.++|++|+|+++.. ..++++
T Consensus 36 AhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~l 115 (245)
T cd02673 36 AHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELL 115 (245)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcchHHHH
Confidence 99999999999998774321 011234789999999999999999999999999999999874 567888
Q ss_pred HHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccCCCC
Q psy17537 501 FKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPT 580 (773)
Q Consensus 501 L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~~~~ 580 (773)
++.+...+.++ +.|+.|+.+.+.++..|.++|+||+|||+||.+........|. ..++|.+++. .
T Consensus 116 ~~~~~~~~~~e----~~C~~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~~-------~~~~~~~~~~----~ 180 (245)
T cd02673 116 ISNFKTWSPIE----KDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKK-------NEEIMKKYCG----T 180 (245)
T ss_pred HHHhhcccccC----ccCCCCCCccceeechhhhCChhhEEeeEeeeecccccccccc-------cccccccccC----C
Confidence 88888776665 8999998778999999999999999999999876432222222 2345666654 3
Q ss_pred CcceEEeEEEEeecc-CCCCcEEEEeccCC-CCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCc
Q psy17537 581 PATYILHAVLVHSGD-NHGGHYVVYINPKG-DNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHP 658 (773)
Q Consensus 581 ~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (773)
...|+|+|||+|.|. .++|||+||+|... .+.
T Consensus 181 ~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~---------------------------------------------- 214 (245)
T cd02673 181 DAKYSLVAVICHLGESPYDGHYIAYTKELYNGSS---------------------------------------------- 214 (245)
T ss_pred CceEEEEEEEEECCCCCCCceEEEEEEcCCCCCe----------------------------------------------
Confidence 467999999999998 89999999999854 455
Q ss_pred EEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 659 WCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 659 W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|+++++++|+.. ...+||||||+
T Consensus 215 Wy~fnD~~V~~v~~~~v~~~--------------~~~~aYiLFY~ 245 (245)
T cd02673 215 WLYCSDDEIRPVSKNDVSTN--------------ARSSGYLIFYD 245 (245)
T ss_pred EEEeeCceeeEcCHHHHhhc--------------cCCceEEEEEC
Confidence 99999999999999999731 24689999995
No 26
>KOG0944|consensus
Probab=100.00 E-value=1.4e-40 Score=359.40 Aligned_cols=222 Identities=23% Similarity=0.368 Sum_probs=189.1
Q ss_pred ccccccccccCccccchhhHHHHHhccHHHHHHHHcC----CCCCCCCchHHHHHHHHHHHHhhcCC--C---------C
Q psy17537 346 KHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM----PTESDDSNKSVALALQRVFHELQFSD--K---------P 410 (773)
Q Consensus 346 ~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~----~~~~~~~~~~l~~~L~~lf~~l~~~~--~---------~ 410 (773)
..+|++||.|+||+||||||+|+|+.+|.|....... +....++..++-++|.+|.+.|..+. + -
T Consensus 303 ~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qng 382 (763)
T KOG0944|consen 303 FGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNG 382 (763)
T ss_pred cCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCC
Confidence 4578999999999999999999999999999877654 23345667799999999999997643 1 2
Q ss_pred CChhhhhhhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEE
Q psy17537 411 VGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQ 488 (773)
Q Consensus 411 ~~~~~l~~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~ 488 (773)
+.|..|....+ .+.|...+||||+||+.+||+.|++...... ..+.++|...+..++.|..|...+.+.+.-+.|+
T Consensus 383 IsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~--~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~ 460 (763)
T KOG0944|consen 383 ISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL--PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQ 460 (763)
T ss_pred cCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC--CCHHHHHHhhhhhhhhhhccccccccchhheeeE
Confidence 45666665554 5789999999999999999999987654332 5688999999999999999999999999999999
Q ss_pred eecCC------CCCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCce
Q psy17537 489 LNVKG------KKDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDR 561 (773)
Q Consensus 489 l~i~~------~~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~ 561 (773)
|+|+. ..++..||+.|+.+.+.+ |+|..|+ +..|+++..|+++|++|+||+.||.| .....+|+...
T Consensus 461 lpv~~~~~v~~~v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~--~dw~pkKld~~ 534 (763)
T KOG0944|consen 461 LPVPMTNEVREKVPISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL--QDWVPKKLDVS 534 (763)
T ss_pred eeccccccccccCCHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEEEe--cCceeeeeccc
Confidence 99874 458999999999995445 8899884 88899999999999999999999999 46789999999
Q ss_pred eeeccccccccccc
Q psy17537 562 FEFYDRIELDDFLK 575 (773)
Q Consensus 562 v~fP~~Ldl~~~~~ 575 (773)
+++|+.||++.|..
T Consensus 535 iempe~ldls~~rs 548 (763)
T KOG0944|consen 535 IEMPEELDLSSYRS 548 (763)
T ss_pred eecchhhchhhhhh
Confidence 99999999988865
No 27
>KOG1864|consensus
Probab=100.00 E-value=7.9e-39 Score=359.66 Aligned_cols=283 Identities=31% Similarity=0.480 Sum_probs=233.0
Q ss_pred ccccccccCccccchh--hHHHHHhccHHHHHHHHcCCCCCCC---CchHHHHHHHHHHHHhhcCCC---CCChhhhhhh
Q psy17537 348 TGYVGLKNQGATCYMN--SLLQTLYFTNQLRKAVYKMPTESDD---SNKSVALALQRVFHELQFSDK---PVGTKKLTKS 419 (773)
Q Consensus 348 ~g~~GL~N~GntCY~N--SvLQ~L~~~p~fr~~l~~~~~~~~~---~~~~l~~~L~~lf~~l~~~~~---~~~~~~l~~~ 419 (773)
...-|..|.+++|+.| ++.|.++.+..+++..+........ ....+...+..++........ -+.+..++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~ 309 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISD 309 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhh
Confidence 4567889999999999 9999999999998766543322111 233444555555554433322 3455555554
Q ss_pred cC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC--------------------------------cCCccccccceeE
Q psy17537 420 FG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTC--------------------------------VEGTVPKLFEGKM 465 (773)
Q Consensus 420 l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~--------------------------------~~~~i~~lF~g~~ 465 (773)
+. ...|..+.||||+||+.++++.+++.+.... ....+..+|.|++
T Consensus 310 ~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l 389 (587)
T KOG1864|consen 310 LIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGIL 389 (587)
T ss_pred hhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCee
Confidence 43 4678999999999999999999987653211 1246889999999
Q ss_pred EEEEEeccCCceeeeEeeceeEEeecC--CCCCHHHHHHhcCCceeecCCCcccCCCC-CceeeeeeeEeccCCceeEEE
Q psy17537 466 ISFIKCKKVNYTSSRAETFYDIQLNVK--GKKDILESFKDYIEPEVLEGDNKYDAGVH-GLQDAEKGVTFENLPPVLHLH 542 (773)
Q Consensus 466 ~~~~~C~~C~~~s~~~e~f~~l~l~i~--~~~sl~~~L~~~~~~E~l~~~n~~~C~~c-~~~~a~k~~~i~~lP~vL~i~ 542 (773)
....+|..|+..+.+.+.|.+++++++ +..++..+|+.|..+|.+.|+++|.|++| +.++|++++.++++|.+|+||
T Consensus 390 ~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~ 469 (587)
T KOG1864|consen 390 TNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLH 469 (587)
T ss_pred eeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeee
Confidence 999999999999999999999999998 68999999999999999999999999998 799999999999999999999
Q ss_pred eeceEecCCCCcceecCceeeeccccccccccccCCCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCc
Q psy17537 543 LMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDK 621 (773)
Q Consensus 543 L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~ 621 (773)
||||.|+.......|+...+.+|.++.+.....+.......|+|+|||+|.|. .+.|||+||+|.. +-.
T Consensus 470 Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~-~~n--------- 539 (587)
T KOG1864|consen 470 LKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSL-DFN--------- 539 (587)
T ss_pred hhccccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeC-CCC---------
Confidence 99999998777789999999999999998877765444589999999999999 9999999999983 222
Q ss_pred hhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHH
Q psy17537 622 DAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVA 677 (773)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~ 677 (773)
|++|||+.|+.++.++|..
T Consensus 540 -------------------------------------Wl~fdD~~V~~~s~~~v~~ 558 (587)
T KOG1864|consen 540 -------------------------------------WLLFDDDNVEPISEEPVSE 558 (587)
T ss_pred -------------------------------------ceecccccccccCcchhhh
Confidence 9999999999999999864
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-38 Score=327.83 Aligned_cols=236 Identities=36% Similarity=0.622 Sum_probs=200.9
Q ss_pred ccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcCCCCCCCCCCC
Q psy17537 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQH 431 (773)
Q Consensus 352 GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~~~~~~~~~Qq 431 (773)
||.|.||+||+||+||+|++ .||
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~---------------------------------------------------------~q~ 23 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS---------------------------------------------------------EQQ 23 (255)
T ss_pred CccccCcchHHhHHHHHHHH---------------------------------------------------------HHH
Confidence 89999999999999999988 799
Q ss_pred cHHHHHHHHHHHHHHHhcC--------CCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCC----CCCHHH
Q psy17537 432 DVQEFLRVLLDKLEIKMKG--------TCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG----KKDILE 499 (773)
Q Consensus 432 DA~Efl~~Ll~~L~~~~~~--------~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~----~~sl~~ 499 (773)
||+||+..+|+.|+.++.. ....+.+.++|.|.+...+.|..|+..+.....+..+.++++. ..+|++
T Consensus 24 Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~~ 103 (255)
T cd02257 24 DAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLED 103 (255)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCCCCcHHH
Confidence 9999999999999999875 3345789999999999999999998877776666667776664 479999
Q ss_pred HHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecccccccccccc---
Q psy17537 500 SFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKE--- 576 (773)
Q Consensus 500 ~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~--- 576 (773)
+|+.++..+.+.+.++..|..+..+.+.++..+.++|++|+|+|+||.++.. ....|+...|.||..|++..++..
T Consensus 104 ~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~~k~~~~v~~~~~l~~~~~~~~~~~ 182 (255)
T cd02257 104 CLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSFPLELDLSPYLSEGEK 182 (255)
T ss_pred HHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc-cccccCCCeEeCCCcccCccccccccc
Confidence 9999999999987544444333478889999999999999999999998753 567899999999999999888642
Q ss_pred ---CCCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhcccccccccccccccccccccc
Q psy17537 577 ---KGPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTES 652 (773)
Q Consensus 577 ---~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (773)
.......|+|+|||+|.|. .++|||+||+|....+.
T Consensus 183 ~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~---------------------------------------- 222 (255)
T cd02257 183 DSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGK---------------------------------------- 222 (255)
T ss_pred cccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCc----------------------------------------
Confidence 2355688999999999999 59999999999954466
Q ss_pred CCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 653 IGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 653 ~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
||+|||+.|++++.+++.... ..+.+||||||+
T Consensus 223 ------W~~~nD~~V~~v~~~~~~~~~------------~~~~~~yll~Y~ 255 (255)
T cd02257 223 ------WYKFNDDKVTEVSEEEVLEFG------------SLSSSAYILFYE 255 (255)
T ss_pred ------eEEEeccccEEcCHHHhhhcc------------CCCCceEEEEEC
Confidence 999999999999999986421 147889999995
No 29
>KOG1867|consensus
Probab=100.00 E-value=1e-38 Score=353.77 Aligned_cols=295 Identities=29% Similarity=0.485 Sum_probs=252.1
Q ss_pred cccccccccCccccchhhHHHHHhccHHHHHHHHcCCC--CCCCC-chHHHHHHHHHHHHhhcCC--CCCChhhhhhhcC
Q psy17537 347 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT--ESDDS-NKSVALALQRVFHELQFSD--KPVGTKKLTKSFG 421 (773)
Q Consensus 347 ~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~--~~~~~-~~~l~~~L~~lf~~l~~~~--~~~~~~~l~~~l~ 421 (773)
..++.||.|+|+||+||++||.|.+.+..+...+...+ +.... ..++.+++.++|..++... .++.+..++...-
T Consensus 158 ~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~ 237 (492)
T KOG1867|consen 158 ALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVW 237 (492)
T ss_pred eecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHH
Confidence 45779999999999999999999988888876654332 23333 6799999999999998776 4677776665442
Q ss_pred --CCCCCCCCCCcHHHHHHHHHHHHHHHhc--------CC---CcCCccccccceeEEEEEEeccCCceeeeEeeceeEE
Q psy17537 422 --WETLDSFMQHDVQEFLRVLLDKLEIKMK--------GT---CVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQ 488 (773)
Q Consensus 422 --~~~~~~~~QqDA~Efl~~Ll~~L~~~~~--------~~---~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~ 488 (773)
.+.+.++.||||+||+..+++.++.+.+ .. ...+++...|.|.+.+.++|..|+..+...++|++|+
T Consensus 238 k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~dis 317 (492)
T KOG1867|consen 238 KHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDIS 317 (492)
T ss_pred HhCcccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCcccee
Confidence 3567779999999999999999998871 11 2257899999999999999999999999999999999
Q ss_pred eecCCC----------CCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCccee
Q psy17537 489 LNVKGK----------KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVK 557 (773)
Q Consensus 489 l~i~~~----------~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K 557 (773)
|+|+.. .++.+++..+...+......++.|..|+ ++.++++..+.++|.+|.+|++||.+....... |
T Consensus 318 L~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~-k 396 (492)
T KOG1867|consen 318 LDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGARE-K 396 (492)
T ss_pred eecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccccccccc-c
Confidence 999754 5699999999999988888999999995 789999999999999999999999998755444 9
Q ss_pred cCceeeeccccccccccccC-----CCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhcc
Q psy17537 558 FNDRFEFYDRIELDDFLKEK-----GPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLY 632 (773)
Q Consensus 558 ~~~~v~fP~~Ldl~~~~~~~-----~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~ 632 (773)
+++.|.||..|+|.+|+..+ +..+..|+|.|||+|+|..++|||+||+|. .+.
T Consensus 397 i~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~--~~~-------------------- 454 (492)
T KOG1867|consen 397 IDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ--SGG-------------------- 454 (492)
T ss_pred cCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEEe--CCC--------------------
Confidence 99999999999999998752 134689999999999999999999999998 555
Q ss_pred ccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEech
Q psy17537 633 EPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESE 707 (773)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~~ 707 (773)
|++|||+.|+.++.++|+ ...||+|||.+...
T Consensus 455 --------------------------~~~~dDs~v~~~s~~eVl-----------------~~~aylLFY~~~~~ 486 (492)
T KOG1867|consen 455 --------------------------WFKCDDSTVTKVSEEEVL-----------------SSQAYLLFYTQEQV 486 (492)
T ss_pred --------------------------cEEEcCeEEEEeeHHHhh-----------------hchhhheehhHHhh
Confidence 999999999999999997 56799999987543
No 30
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6e-37 Score=319.43 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=180.0
Q ss_pred ccccCCcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhh
Q psy17537 339 GVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTK 418 (773)
Q Consensus 339 ~~~~~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~ 418 (773)
..+++..+.++++||.|.|.|||+||+||+|+++|+||+.+. +.........+++++|+.||..
T Consensus 4 ~fdf~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~-~~~~~~~~~~~l~~el~~lfs~--------------- 67 (268)
T cd02672 4 DFDFEFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTA-IILVACPKESCLLCELGYLFST--------------- 67 (268)
T ss_pred cccccccccccccccccCCccchHHHHHHHHHhcHHHHHHHH-hhcccCCcCccHHHHHHHHHHH---------------
Confidence 356778889999999999999999999999999999999743 3333445567999999999911
Q ss_pred hcCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCC-----
Q psy17537 419 SFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG----- 493 (773)
Q Consensus 419 ~l~~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~----- 493 (773)
=.+-|.++|++++..+...+. ..|++.+.+.++++.|+|+++.
T Consensus 68 -------------~iq~F~~fll~~i~~~~~~~~-------------------~~C~~~s~~~~~~~~LsLpip~~~~~~ 115 (268)
T cd02672 68 -------------LIQNFTRFLLETISQDQLGTP-------------------FSCGTSRNSVSLLYTLSLPLGSTKTSK 115 (268)
T ss_pred -------------HHHHHHHHHHHHHHHHhcccC-------------------CCCCceeeccccceeeeeecCcccccc
Confidence 135588899999875543211 6799999999999999999985
Q ss_pred CCCHHHHHHhcCCceeecCCCcccCCCC-CceeeeeeeEeccCCc----eeEEEeeceEecCCC-----CcceecCceee
Q psy17537 494 KKDILESFKDYIEPEVLEGDNKYDAGVH-GLQDAEKGVTFENLPP----VLHLHLMRFQYDPVT-----DCSVKFNDRFE 563 (773)
Q Consensus 494 ~~sl~~~L~~~~~~E~l~~~n~~~C~~c-~~~~a~k~~~i~~lP~----vL~i~L~Rf~~d~~~-----~~~~K~~~~v~ 563 (773)
..+|.+||+.++..|.. ++++|+.| .++.+.++..|+++|+ ||+|||+||.++... ....|+...|.
T Consensus 116 ~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~ 192 (268)
T cd02672 116 ESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVS 192 (268)
T ss_pred CCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeec
Confidence 35999999999998854 46899999 4789999999999999 999999999965422 23467888999
Q ss_pred eccccccccccccCCCCCcceEEeEEEEeecc-CCCCcEEEEeccC
Q psy17537 564 FYDRIELDDFLKEKGPTPATYILHAVLVHSGD-NHGGHYVVYINPK 608 (773)
Q Consensus 564 fP~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~ 608 (773)
||..+++..+...+......|+|+|||+|.|. .++|||+||+|..
T Consensus 193 f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~ 238 (268)
T cd02672 193 PKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKV 238 (268)
T ss_pred ccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEcc
Confidence 99888777666555456688999999999998 5999999999983
No 31
>KOG1873|consensus
Probab=100.00 E-value=7.2e-38 Score=341.26 Aligned_cols=316 Identities=28% Similarity=0.408 Sum_probs=239.4
Q ss_pred cccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCC-------------------CCCchHHHHHHHHHHHHhh
Q psy17537 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES-------------------DDSNKSVALALQRVFHELQ 405 (773)
Q Consensus 345 ~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~-------------------~~~~~~l~~~L~~lf~~l~ 405 (773)
+.....+||.|+|||||+|||+|.|..+|.||+.+....... ..+...+..+|..|..+..
T Consensus 200 ~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e 279 (877)
T KOG1873|consen 200 RRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSE 279 (877)
T ss_pred cccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhh
Confidence 344556999999999999999999999999999997654331 1123456677777666667
Q ss_pred cCCCCCChhhhhhhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcC---------------------------------
Q psy17537 406 FSDKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKG--------------------------------- 450 (773)
Q Consensus 406 ~~~~~~~~~~l~~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~--------------------------------- 450 (773)
.....++|+.|...|. .+.|.++.||||||+|+.|||.|..+-..
T Consensus 280 ~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f 359 (877)
T KOG1873|consen 280 TTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPF 359 (877)
T ss_pred ccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhccccc
Confidence 7778999999999886 57899999999999999999999654210
Q ss_pred CCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCC-----------------------------------
Q psy17537 451 TCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKK----------------------------------- 495 (773)
Q Consensus 451 ~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~----------------------------------- 495 (773)
....-.+...|.|..++.+.|..|. .+...+.|.+.+++|-...
T Consensus 360 ~~~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~ 438 (877)
T KOG1873|consen 360 KDLSLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSS 438 (877)
T ss_pred ccCCcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCcccc
Confidence 0011244577888888888888887 5566677777777661000
Q ss_pred --------------------------------------------------------------------------------
Q psy17537 496 -------------------------------------------------------------------------------- 495 (773)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (773)
T Consensus 439 e~~~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde 518 (877)
T KOG1873|consen 439 ELLDSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDE 518 (877)
T ss_pred cccccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy17537 496 -------------------------------------------------------------------------------- 495 (773)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (773)
T Consensus 519 ~n~~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~ 598 (877)
T KOG1873|consen 519 ANMDEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSG 598 (877)
T ss_pred ccccccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeecc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy17537 496 -------------------------------------------------------------------------------- 495 (773)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (773)
T Consensus 599 n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~ 678 (877)
T KOG1873|consen 599 NDKTVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPC 678 (877)
T ss_pred ccccccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCc
Confidence
Q ss_pred CHHHHHHhcCCceeecCCCcccCCCCCce----------------------------eeeeeeEeccCCceeEEEeeceE
Q psy17537 496 DILESFKDYIEPEVLEGDNKYDAGVHGLQ----------------------------DAEKGVTFENLPPVLHLHLMRFQ 547 (773)
Q Consensus 496 sl~~~L~~~~~~E~l~~~n~~~C~~c~~~----------------------------~a~k~~~i~~lP~vL~i~L~Rf~ 547 (773)
+++.||.+|+..|++.|+|+|.|++|.++ .|.+++.|..+||||+|||+||.
T Consensus 679 Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~ 758 (877)
T KOG1873|consen 679 SVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFF 758 (877)
T ss_pred cHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhh
Confidence 68899999999999999999999998541 13667888999999999999999
Q ss_pred ecCCCCcceecCceeeeccccccccccccCC-----CCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCch
Q psy17537 548 YDPVTDCSVKFNDRFEFYDRIELDDFLKEKG-----PTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKD 622 (773)
Q Consensus 548 ~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~~-----~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~ 622 (773)
.+. .++..|++..+.|++.+||..|+.... .....|+|.|||.|.|+...|||++|+|...... ...| .
T Consensus 759 q~~-~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~-~~~~-~--- 832 (877)
T KOG1873|consen 759 QDI-RGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLD-LSAP-S--- 832 (877)
T ss_pred hhh-hchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhh-ccCc-c---
Confidence 764 455889999999999999999876431 2446899999999999999999999999732211 0001 0
Q ss_pred hhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEE
Q psy17537 623 AEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVY 702 (773)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY 702 (773)
..+. ...+...+..+||...|..|++|++++|+ ...||||||
T Consensus 833 -------------~~~~--------~~sd~~~~~~~Wy~iSDs~VrevS~d~vL-----------------kseAYlLFY 874 (877)
T KOG1873|consen 833 -------------NSKD--------FESDAGIPSGRWYYISDSIVREVSLDEVL-----------------KSEAYLLFY 874 (877)
T ss_pred -------------cccc--------chhccCCCCcceEEecchheecccHHHHh-----------------hhhhhhhhe
Confidence 0000 00111134567999999999999999997 466999999
Q ss_pred EEe
Q psy17537 703 IRE 705 (773)
Q Consensus 703 ~r~ 705 (773)
+|.
T Consensus 875 ERI 877 (877)
T KOG1873|consen 875 ERI 877 (877)
T ss_pred ecC
Confidence 983
No 32
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-35 Score=303.53 Aligned_cols=220 Identities=22% Similarity=0.365 Sum_probs=178.7
Q ss_pred ccccccCccccchhhHHHHHhccHHHHHHHHcC----CCCCCCCchHHHHHHHHHHHHhhcCCC-----CCChhhhhhhc
Q psy17537 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM----PTESDDSNKSVALALQRVFHELQFSDK-----PVGTKKLTKSF 420 (773)
Q Consensus 350 ~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~----~~~~~~~~~~l~~~L~~lf~~l~~~~~-----~~~~~~l~~~l 420 (773)
++||.|+||+||+||++|.|+....+...+... +..-..+..++.|+|.+|...|..... -+.|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 799999999999999999999887766544332 222334567899999999998876542 24555555555
Q ss_pred C--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCC---C
Q psy17537 421 G--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGK---K 495 (773)
Q Consensus 421 ~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~---~ 495 (773)
+ .+.|....||||+|||.+||+.|.+.... .....|.++|...+..++.|..|+..+...++...+.+++.+. .
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S-~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~ 461 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS-YLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQ 461 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccch-hcCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchh
Confidence 4 57788999999999999999999876543 2345788999999999999999999999999999999988654 5
Q ss_pred CHHHHHHhcCCceeecCCCcccCCCC-CceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeec--ccccccc
Q psy17537 496 DILESFKDYIEPEVLEGDNKYDAGVH-GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFY--DRIELDD 572 (773)
Q Consensus 496 sl~~~L~~~~~~E~l~~~n~~~C~~c-~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP--~~Ldl~~ 572 (773)
++.++++.|+.+..++ |.|++| ++..|.++..|++||++|++|..||.+. .....|+..++.+. ..++++.
T Consensus 462 di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lq--ny~v~kls~pi~~~~D~m~~~~s 535 (749)
T COG5207 462 DIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQ--NYKVEKLSDPIEMRSDDMIKLGS 535 (749)
T ss_pred hHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeecc--ceeehhccCceEEccccccchhh
Confidence 7999999999999999 999999 5889999999999999999999999975 34566777776665 3577777
Q ss_pred cccc
Q psy17537 573 FLKE 576 (773)
Q Consensus 573 ~~~~ 576 (773)
|++.
T Consensus 536 ~msk 539 (749)
T COG5207 536 FMSK 539 (749)
T ss_pred Hhhc
Confidence 7654
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=7.5e-33 Score=295.68 Aligned_cols=251 Identities=22% Similarity=0.299 Sum_probs=219.3
Q ss_pred cccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhh-cCC-CCCChhhhhhhcCCC--CCC
Q psy17537 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQ-FSD-KPVGTKKLTKSFGWE--TLD 426 (773)
Q Consensus 351 ~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~-~~~-~~~~~~~l~~~l~~~--~~~ 426 (773)
+||+|.+++||+||+||+|+++|++|+.++.+. ......+++|+|+.||++|. .+. ..+.+.+++++|++. ...
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a~~ 78 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEAAA 78 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHHHh
Confidence 599999999999999999999999999999887 34556799999999999999 653 477889999999853 456
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCCc-------------CCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCC
Q psy17537 427 SFMQHDVQEFLRVLLDKLEIKMKGTCV-------------EGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKG 493 (773)
Q Consensus 427 ~~~QqDA~Efl~~Ll~~L~~~~~~~~~-------------~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~ 493 (773)
.+.|+|+++|+++|+++|+.++..... ...|.++|+......++|..|+..+.+.+....+.+..+.
T Consensus 79 l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp~ 158 (295)
T PF13423_consen 79 LGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYPP 158 (295)
T ss_pred cchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCCC
Confidence 778999999999999999998865443 4678999999999999999999999999998888888876
Q ss_pred ---CCCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccc
Q psy17537 494 ---KKDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIE 569 (773)
Q Consensus 494 ---~~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ld 569 (773)
..++.+.|+.++..|.... .+|+.|+ .+.+..+..+.++|+||.|.++|...+ . ....|....+++|..++
T Consensus 159 ~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~-~-~w~~~~~~~~~ip~~i~ 233 (295)
T PF13423_consen 159 SNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE-E-FWPKKNWLKIWIPPSIN 233 (295)
T ss_pred CCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc-c-ccccccCCceecceeee
Confidence 4689999999999888885 8999995 678888899999999999999999987 3 33788889999999999
Q ss_pred cccccccC-------CCCCcceEEeEEEEeecc-CCCCcEEEEeccC
Q psy17537 570 LDDFLKEK-------GPTPATYILHAVLVHSGD-NHGGHYVVYINPK 608 (773)
Q Consensus 570 l~~~~~~~-------~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~ 608 (773)
+..++..+ .....+|+|.|+|+|.|. .++|||||+||..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~ 280 (295)
T PF13423_consen 234 LPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVG 280 (295)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcC
Confidence 99887654 245678999999999999 8999999999984
No 34
>KOG1870|consensus
Probab=100.00 E-value=1.3e-33 Score=335.16 Aligned_cols=296 Identities=31% Similarity=0.479 Sum_probs=250.9
Q ss_pred CcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCC-------CCCCchHHHHHHHHHHHHhhcCCC-CCChhh
Q psy17537 344 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE-------SDDSNKSVALALQRVFHELQFSDK-PVGTKK 415 (773)
Q Consensus 344 ~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~-------~~~~~~~l~~~L~~lf~~l~~~~~-~~~~~~ 415 (773)
.....|.+||.|+|||||||+.+|+|.+.+.++++++..... .......+......+...++.... .+.+..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 345678999999999999999999999999999988653221 122234566777788888877665 455555
Q ss_pred hhhhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCc-----------------------------CCcccccccee
Q psy17537 416 LTKSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCV-----------------------------EGTVPKLFEGK 464 (773)
Q Consensus 416 l~~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~-----------------------------~~~i~~lF~g~ 464 (773)
+...++ .+.+.++.|||.+||+.+|+|.||+.+..... .+.|.++|.|.
T Consensus 320 ~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~ 399 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGT 399 (842)
T ss_pred hhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecce
Confidence 544443 24689999999999999999999998854221 25799999999
Q ss_pred EEEEEEeccCCceeeeEeeceeEEeecCCCC-------------------------------------------------
Q psy17537 465 MISFIKCKKVNYTSSRAETFYDIQLNVKGKK------------------------------------------------- 495 (773)
Q Consensus 465 ~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~------------------------------------------------- 495 (773)
.++.+.|..|+..+.+.++|..|+++++...
T Consensus 400 ~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 479 (842)
T KOG1870|consen 400 YKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELK 479 (842)
T ss_pred ecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcc
Confidence 9999999999999999999999999986321
Q ss_pred --------------------------------------------------------------------------------
Q psy17537 496 -------------------------------------------------------------------------------- 495 (773)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (773)
T Consensus 480 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 559 (842)
T KOG1870|consen 480 PVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLS 559 (842)
T ss_pred cceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy17537 496 -------------------------------------------------------------------------------- 495 (773)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (773)
T Consensus 560 ~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (842)
T KOG1870|consen 560 GAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQ 639 (842)
T ss_pred CCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccc
Confidence
Q ss_pred ---------------------------------------------------------CHHHHHHhcCCceeecCCCcccC
Q psy17537 496 ---------------------------------------------------------DILESFKDYIEPEVLEGDNKYDA 518 (773)
Q Consensus 496 ---------------------------------------------------------sl~~~L~~~~~~E~l~~~n~~~C 518 (773)
+|++||+.|+.+|.|..++.|.|
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C 719 (842)
T KOG1870|consen 640 SLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYC 719 (842)
T ss_pred cccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccC
Confidence 68999999999999999999999
Q ss_pred CCC-CceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeec-cccccccccccCCCCCcceEEeEEEEeeccC
Q psy17537 519 GVH-GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFY-DRIELDDFLKEKGPTPATYILHAVLVHSGDN 596 (773)
Q Consensus 519 ~~c-~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP-~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~ 596 (773)
+.| .++.|.|+..+++||++|+||||||.|.. ....|+.+.|+|| ..||+++|+...+. ..|+|+||++|+|.+
T Consensus 720 ~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r--~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l 795 (842)
T KOG1870|consen 720 PQCKELRQATKKLDLWRLPEILIIHLKRFQYSR--ESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQL 795 (842)
T ss_pred hHHHHHHHHhhhhhhhhCCceEEEEeecceeec--hhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCc
Confidence 999 58899999999999999999999999986 4458999999999 67999999988643 899999999999999
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHH
Q psy17537 597 HGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAV 676 (773)
Q Consensus 597 ~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~ 676 (773)
.+|||+||+|...+++ ||.|||..|++++++++.
T Consensus 796 ~~GHYta~~k~~~~~~----------------------------------------------w~~fdDs~v~~~~~~~i~ 829 (842)
T KOG1870|consen 796 SGGHYTAYAKNVGDGK----------------------------------------------WYLFDDSSVSEVDEDEID 829 (842)
T ss_pred CCcchhhhhhcCCCCc----------------------------------------------eEEeccccCCCCChhhcc
Confidence 9999999999976777 999999999999998884
Q ss_pred HhhcCCCCCCCCcccCCCCceEEEEEEEec
Q psy17537 677 AHNFGGNDEDSGLTVKHSTNAYMLVYIRES 706 (773)
Q Consensus 677 ~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~ 706 (773)
+..||+|||+|++
T Consensus 830 -----------------t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 830 -----------------TEAAYVLFYRRLD 842 (842)
T ss_pred -----------------cccceEEEEEecC
Confidence 6779999999964
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.8e-31 Score=271.37 Aligned_cols=214 Identities=21% Similarity=0.342 Sum_probs=156.8
Q ss_pred ccccCcc-ccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcCCCCCCCCCC
Q psy17537 352 GLKNQGA-TCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQ 430 (773)
Q Consensus 352 GL~N~Gn-tCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~~~~~~~~~Q 430 (773)
|+.|.+| +|||-|+|-+||. +|
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~---------------------------------------------------------~q 23 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA---------------------------------------------------------EQ 23 (241)
T ss_pred CCccccCceeehHHHHHHHHH---------------------------------------------------------Hh
Confidence 7889999 9999999999866 79
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecC---CCCCHHHHHHhcCCc
Q psy17537 431 HDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVK---GKKDILESFKDYIEP 507 (773)
Q Consensus 431 qDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~---~~~sl~~~L~~~~~~ 507 (773)
||+.||+.+|+++++.-+- ...-++|.|-....-.. +.-.|.++.|+++.. +..+|++||+.|++.
T Consensus 24 ~D~~e~~~~l~~~~~~~~~-----~~~~~~~~~g~~~~~~~------~~~~e~~l~l~ip~~~~~~~~tLedcLe~~~~~ 92 (241)
T cd02670 24 QDPEEFFNFITDKLLMPLL-----EPKVDIIHGGKKDQDDD------KLVNERLLQIPVPDDDDGGGITLEQCLEQYFNN 92 (241)
T ss_pred cCHHHHHHHHHHHHhhhhh-----hHHHHHHhcCccccccc------cccccceEEeecccCCCCCcCCHHHHHHHHhch
Confidence 9999999999999975332 23445665532211111 223456666666654 346999999999987
Q ss_pred eeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccC----------
Q psy17537 508 EVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEK---------- 577 (773)
Q Consensus 508 E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~---------- 577 (773)
|. |.++|++|+||||||.++. +...|+++.|.||..|||.+|+...
T Consensus 93 e~----------------------i~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~ 148 (241)
T cd02670 93 SV----------------------FAKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLE 148 (241)
T ss_pred hh----------------------hhhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCchhhcccccccccccccc
Confidence 75 7899999999999999986 6678999999999999999998653
Q ss_pred ------------CCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhcccccccccccccc
Q psy17537 578 ------------GPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGH 644 (773)
Q Consensus 578 ------------~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (773)
......|+|+|||+|.|. +++|||+||+|....+. |
T Consensus 149 ~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~----~--------------------------- 197 (241)
T cd02670 149 CRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSL----T--------------------------- 197 (241)
T ss_pred cccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccc----c---------------------------
Confidence 123468999999999998 89999999999853322 0
Q ss_pred ccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEE
Q psy17537 645 AYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703 (773)
Q Consensus 645 ~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~ 703 (773)
....+.....|++|||..|+.+.....-. + ......+||||||+
T Consensus 198 ----~~~~~~~~~~W~~FDD~~v~~~~~~~~~~---~--------~~~~~~~aYmLFYq 241 (241)
T cd02670 198 ----ETDNEAYNAQWVFFDDMADRDGVSNGFNI---P--------AARLLEDPYMLFYQ 241 (241)
T ss_pred ----ccccCCCCCeEEEecCccccccccccccc---c--------hhcccCCceEEEeC
Confidence 00111222359999999988765432100 0 00247889999995
No 36
>KOG1872|consensus
Probab=99.95 E-value=1.8e-29 Score=266.07 Aligned_cols=293 Identities=22% Similarity=0.343 Sum_probs=222.5
Q ss_pred cccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCC-----CCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcC--
Q psy17537 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-----DSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG-- 421 (773)
Q Consensus 349 g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~-----~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~-- 421 (773)
-++||.|+|||||||+.+|+|...|+++..+........ .....+..+++.+|+.|+.+ .++.|..++..+.
T Consensus 104 lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~~ 182 (473)
T KOG1872|consen 104 LPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSSQ 182 (473)
T ss_pred CCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHHH
Confidence 357999999999999999999999999887765432111 11357888999999999988 8888877776654
Q ss_pred ------CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC----cCCccccccceeEEEEEEeccCCceeee--EeeceeEEe
Q psy17537 422 ------WETLDSFMQHDVQEFLRVLLDKLEIKMKGTC----VEGTVPKLFEGKMISFIKCKKVNYTSSR--AETFYDIQL 489 (773)
Q Consensus 422 ------~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~----~~~~i~~lF~g~~~~~~~C~~C~~~s~~--~e~f~~l~l 489 (773)
+-....+.||||.|++..++..++..+.... ....+..+|+..+..+..|..-+..... .|.|..|++
T Consensus 183 ~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c 262 (473)
T KOG1872|consen 183 YPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKC 262 (473)
T ss_pred hHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCcccccccccccccccce
Confidence 2234458999999999999999988765422 2345788899999999999887665433 788888888
Q ss_pred ecCCC-CCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccc
Q psy17537 490 NVKGK-KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDR 567 (773)
Q Consensus 490 ~i~~~-~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~ 567 (773)
.+... ..+...|+.-+++++-.. -+.-+ -....|...|.+||.+|.|+..||.|....+...|+...|.||..
T Consensus 263 ~i~~~~~~~k~Gl~~~~~e~~~K~-----s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ 337 (473)
T KOG1872|consen 263 IINKTVHDMRFGLKSGLSEEIQKI-----SSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKD 337 (473)
T ss_pred EEeeeechhhhhhhhhhhhhhhcc-----CcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhh
Confidence 88654 334444444433222110 00001 112357788999999999999999999999999999999999999
Q ss_pred cccccccccC-------------------------------------------------CCC-CcceEEeEEEEeecc-C
Q psy17537 568 IELDDFLKEK-------------------------------------------------GPT-PATYILHAVLVHSGD-N 596 (773)
Q Consensus 568 Ldl~~~~~~~-------------------------------------------------~~~-~~~Y~L~aVv~H~G~-~ 596 (773)
||.-..|.++ ... ...|+|.|||.|.|. .
T Consensus 338 ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss 417 (473)
T KOG1872|consen 338 LDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSS 417 (473)
T ss_pred hhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeecccccc
Confidence 9988887753 011 467999999999999 8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHH
Q psy17537 597 HGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAV 676 (773)
Q Consensus 597 ~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~ 676 (773)
.+|||++++|.. .+. |++|||+.|+.|..+.++
T Consensus 418 ~sghy~aw~r~s-~~~----------------------------------------------w~~fdd~~vs~v~~e~i~ 450 (473)
T KOG1872|consen 418 KSGHYVAWNRVS-EDK----------------------------------------------WGHFDDDMVSFVLGETIL 450 (473)
T ss_pred CCCcceEEEecc-CCc----------------------------------------------eeecccccccccccccee
Confidence 999999999993 335 999999999999988876
Q ss_pred HhhcCCCCCCCCcccCCCCceEEEEEEE
Q psy17537 677 AHNFGGNDEDSGLTVKHSTNAYMLVYIR 704 (773)
Q Consensus 677 ~~~~g~~~~~~~~~~~~~~~aYlLfY~r 704 (773)
... ||. .+.+||+|+|.-
T Consensus 451 ~ls-ggg---------d~~~ayvllyk~ 468 (473)
T KOG1872|consen 451 SLS-GGG---------DWHSAYVLLYKA 468 (473)
T ss_pred eec-CCC---------ccchhhheeecc
Confidence 544 443 478999999964
No 37
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.6e-29 Score=270.51 Aligned_cols=205 Identities=44% Similarity=0.816 Sum_probs=190.0
Q ss_pred CcccccccccEEEEEEcCccccccccCCCCeEecCccEEEEEEeCCcc--------------------------------
Q psy17537 58 DDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLLV-------------------------------- 105 (773)
Q Consensus 58 ~~~~~~~~~~~~~w~I~~fs~l~~~~~S~~F~vgg~~W~i~~yP~g~~-------------------------------- 105 (773)
+++.+.....+|+|+|++||.+.+++.||+|.|||+.|+|.+||.|+.
T Consensus 30 ~pd~Ee~~~~sftW~vk~wsel~~k~~Sp~F~vg~~twki~lfPqG~nq~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~ 109 (1089)
T COG5077 30 DPDVEELLEMSFTWKVKRWSELAKKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGGKYYDCCAQFAFD 109 (1089)
T ss_pred CccHHHHhhcccceecCChhhhhhhccCCcccccCeeEEEEEecccCCccccEEEEEeccchhhhhcCcchhhhhheeee
Confidence 445666677899999999999999999999999999999999999921
Q ss_pred -----------cceeeeeeeccCCCcccccccCcccccCCCCC---ccccCcEEEEEEeecC-CCCcccc------cCCC
Q psy17537 106 -----------RRRIQHLFFIKENDWGFSHFMTFSDLLDPDKG---FIKDDSIILEVCVQAD-APHGVSW------DSKK 164 (773)
Q Consensus 106 -----------~~~~~~~f~~~~~~wG~~~fi~~~~l~~~~~g---~l~~d~~~i~~~v~v~-~~~~~~~------~~~~ 164 (773)
.+.++|+|+...++|||.+|+.|..|..|+.| |+.++++.|.|+|+|. .|+|++| ++++
T Consensus 110 Is~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSKk 189 (1089)
T COG5077 110 ISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKK 189 (1089)
T ss_pred cCCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeeccccccccc
Confidence 23578999999999999999999999988877 6889999999999998 7999998 8999
Q ss_pred CCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCCCCcChHHHHHHcCCCCCC
Q psy17537 165 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLD 244 (773)
Q Consensus 165 ~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 244 (773)
++|++||+|+|+||||||+||+||++..||+.++.+++..+....+++.+||++|+.|+.+..|+++.+++++++|..+.
T Consensus 190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grdSValaLQr~Fynlq~~~~PvdTteltrsfgWds~d 269 (1089)
T COG5077 190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFGWDSDD 269 (1089)
T ss_pred ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhccCCCcchHHhhhhcCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhhhhhcCCC
Q psy17537 245 SFMQHDVQEFLRVCNGET 262 (773)
Q Consensus 245 ~~~QqDa~E~l~~~~~e~ 262 (773)
.++|||.|||-+++.+..
T Consensus 270 sf~QHDiqEfnrVl~DnL 287 (1089)
T COG5077 270 SFMQHDIQEFNRVLQDNL 287 (1089)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 999999999999876533
No 38
>KOG1871|consensus
Probab=99.95 E-value=1.1e-27 Score=245.82 Aligned_cols=295 Identities=23% Similarity=0.367 Sum_probs=222.5
Q ss_pred ccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCC---CCCchHHHHHHHHHHHHhhcCC-----------C----
Q psy17537 348 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES---DDSNKSVALALQRVFHELQFSD-----------K---- 409 (773)
Q Consensus 348 ~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~---~~~~~~l~~~L~~lf~~l~~~~-----------~---- 409 (773)
..++|+.|-||-|||||+||+|+.|++|.+.+..++... .....+++.++..+......-. .
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 457999999999999999999999999998886655221 1223455666655554443100 0
Q ss_pred --------------CCChhhhhhhc----CCCCCCCCCCCcHHHHHHHHHHHHHHHhcCC--------------------
Q psy17537 410 --------------PVGTKKLTKSF----GWETLDSFMQHDVQEFLRVLLDKLEIKMKGT-------------------- 451 (773)
Q Consensus 410 --------------~~~~~~l~~~l----~~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~-------------------- 451 (773)
++-+..+...+ ..+....|.|.||.||+..+||.||+++-+.
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~ 185 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNG 185 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccc
Confidence 11111111111 1244567899999999999999999987320
Q ss_pred -----------------------------------CcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeec--CCC
Q psy17537 452 -----------------------------------CVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNV--KGK 494 (773)
Q Consensus 452 -----------------------------------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--~~~ 494 (773)
...+.|.++|+|+.++.+.-.. .+++...++|..|+|+| ...
T Consensus 186 n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i 264 (420)
T KOG1871|consen 186 NLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKI 264 (420)
T ss_pred ccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeecccc
Confidence 0114789999999998877654 45668899999999999 566
Q ss_pred CCHHHHHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecccccccccc
Q psy17537 495 KDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFL 574 (773)
Q Consensus 495 ~sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~ 574 (773)
.++++++..+...|.+.+ |.-...+...+.+++.+.+||++|++||+||.|.. ++...|+.+.+++|-.+.+..-+
T Consensus 265 ~sv~~ales~~~re~lp~---~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~~~~~l~i~~~~ 340 (420)
T KOG1871|consen 265 HSVQDALESLVARESLPG---YSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIEYPWTLKISKNC 340 (420)
T ss_pred CCHHHHhhccChhhcccc---eecCCCCeechhhhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhhccceeeechhh
Confidence 899999999999999886 44333456678899999999999999999999976 67788999999999877765433
Q ss_pred ccC------CCCCcceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccc
Q psy17537 575 KEK------GPTPATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYL 647 (773)
Q Consensus 575 ~~~------~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (773)
-.. ......|.|.|||.|.|. ++.|||...+-+...+.
T Consensus 341 ~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~g----------------------------------- 385 (420)
T KOG1871|consen 341 FSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSG----------------------------------- 385 (420)
T ss_pred hccccchhhhccccccceEEEEEecccccccCceEEeeeecccCc-----------------------------------
Confidence 211 134567999999999999 99999999998854444
Q ss_pred cccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEec
Q psy17537 648 HMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRES 706 (773)
Q Consensus 648 ~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~ 706 (773)
|+++||..|..+..++|+.- ....+||+|.|.|.+
T Consensus 386 -----------w~rIDD~~i~~v~q~dv~~~-------------t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 386 -----------WQRIDDALILFVAQEDVEKV-------------TGSRTPYLLYYIEAD 420 (420)
T ss_pred -----------eeEeccceeeeccHhhhccc-------------cCccchheeEeeecC
Confidence 99999999999999999741 136789999998853
No 39
>KOG1275|consensus
Probab=99.87 E-value=4.7e-22 Score=221.60 Aligned_cols=310 Identities=16% Similarity=0.208 Sum_probs=217.2
Q ss_pred CCccccCCcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcC-CCCCChhh
Q psy17537 337 PHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFS-DKPVGTKK 415 (773)
Q Consensus 337 p~~~~~~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~-~~~~~~~~ 415 (773)
.+..++.....+.|.||...+.+-|.||+||+|+++|++|..++.+.+. ...|++|+|..||.+|..+ .++....+
T Consensus 486 ~edFDF~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C~---~e~CL~CELGFLF~Ml~~S~G~~Cqa~N 562 (1118)
T KOG1275|consen 486 TEDFDFQDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHICT---KEFCLLCELGFLFTMLDSSTGDPCQANN 562 (1118)
T ss_pred cccCCCcccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCccc---hhHHHHHHHHHHHHHHhhhcCCccchhH
Confidence 3455667778899999999999999999999999999999999998654 4459999999999999876 45888888
Q ss_pred hhhhcCCC--CCCCC----------------CCCcHHHHHHHHHHHHH-----------HHhcC----CCcCCccccccc
Q psy17537 416 LTKSFGWE--TLDSF----------------MQHDVQEFLRVLLDKLE-----------IKMKG----TCVEGTVPKLFE 462 (773)
Q Consensus 416 l~~~l~~~--~~~~~----------------~QqDA~Efl~~Ll~~L~-----------~~~~~----~~~~~~i~~lF~ 462 (773)
|+++|+.. ....+ .-|||..|......... +...+ ......+.+.|.
T Consensus 563 Flraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~ 642 (1118)
T KOG1275|consen 563 FLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFC 642 (1118)
T ss_pred HHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhh
Confidence 88888521 00000 11233322211111110 00111 122347889999
Q ss_pred eeEEEEEEeccCCceeeeEeeceeEEeecCCC---------CCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEe
Q psy17537 463 GKMISFIKCKKVNYTSSRAETFYDIQLNVKGK---------KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTF 532 (773)
Q Consensus 463 g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~---------~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i 532 (773)
..+.....|..|+..+.+......+.+..+.. -++.+.|++...-+. ....+|+.|+ .+....+..+
T Consensus 643 ~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~k---n~~~~C~~C~k~ep~~q~~~v 719 (1118)
T KOG1275|consen 643 QEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFK---NKQAWCETCTKPEPTSQKKNV 719 (1118)
T ss_pred hHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhccc---ccccccccccCCCCccccccc
Confidence 99999999999999887776766777776542 234455554443221 1227899995 6677888999
Q ss_pred ccCCceeEEEeeceEecCCCC--cceecCceeeeccccccccccccC------------------CCCCcceEEeEEEEe
Q psy17537 533 ENLPPVLHLHLMRFQYDPVTD--CSVKFNDRFEFYDRIELDDFLKEK------------------GPTPATYILHAVLVH 592 (773)
Q Consensus 533 ~~lP~vL~i~L~Rf~~d~~~~--~~~K~~~~v~fP~~Ldl~~~~~~~------------------~~~~~~Y~L~aVv~H 592 (773)
+.||.+|.|...-+....... +..|....|++|+.+.|..--... +..-..|+|.|+|+|
T Consensus 720 r~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~ 799 (1118)
T KOG1275|consen 720 RSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHA 799 (1118)
T ss_pred ccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEE
Confidence 999999999876665432222 223566789999887775432211 122378999999999
Q ss_pred ecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecC
Q psy17537 593 SGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCS 671 (773)
Q Consensus 593 ~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~ 671 (773)
.|+ .+.+|.|++||. .+..++.+| ...+||.|||..|++++
T Consensus 800 I~d~~~e~~lVs~Ikv-~~~~~~~~~-------------------------------------~dsqWylFNDfLV~~it 841 (1118)
T KOG1275|consen 800 IGDNENEVNLVSPIKV-LRPYHVIKP-------------------------------------DDSQWYLFNDFLVSEIT 841 (1118)
T ss_pred eccCCCccceEEEEEc-cCcccccCc-------------------------------------CcceeEEEcceeeeeCC
Confidence 999 699999999998 333322221 11359999999999999
Q ss_pred HHHHHHhhcCCCCCCCCcccCCCCceEEEEE
Q psy17537 672 KDEAVAHNFGGNDEDSGLTVKHSTNAYMLVY 702 (773)
Q Consensus 672 ~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY 702 (773)
++|++... -.|+.|.||+|
T Consensus 842 e~EAl~~~------------~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 842 EEEALHFD------------GPWKVPAILYY 860 (1118)
T ss_pred hHHheEec------------cCccCcEEEEE
Confidence 99997533 16999999999
No 40
>KOG2026|consensus
Probab=99.86 E-value=2.3e-21 Score=198.47 Aligned_cols=272 Identities=20% Similarity=0.258 Sum_probs=210.6
Q ss_pred cccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCC---CCCChhhhhhhc-
Q psy17537 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSD---KPVGTKKLTKSF- 420 (773)
Q Consensus 345 ~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~---~~~~~~~l~~~l- 420 (773)
...+|++||.|+.++-|.|++||+|.+.+++|++++.... ..+....+...|..+.+.||... ..++|.+++.+.
T Consensus 129 tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n-~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~ 207 (442)
T KOG2026|consen 129 TYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN-YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVM 207 (442)
T ss_pred cceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc-ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHH
Confidence 3457899999999999999999999999999999886421 23445678888999999999875 378888887765
Q ss_pred --CCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcC-CccccccceeEEEEEEecc----CCceeeeEeeceeEEeecCC
Q psy17537 421 --GWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVE-GTVPKLFEGKMISFIKCKK----VNYTSSRAETFYDIQLNVKG 493 (773)
Q Consensus 421 --~~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~-~~i~~lF~g~~~~~~~C~~----C~~~s~~~e~f~~l~l~i~~ 493 (773)
....+..++|-|+.||+.+||+.||..++++... ++|++-|+|.++....-.. -.......-+|+.|.|++|.
T Consensus 208 ~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~ 287 (442)
T KOG2026|consen 208 KLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPP 287 (442)
T ss_pred HHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCC
Confidence 3578999999999999999999999999987754 7999999999876554333 12234556799999999976
Q ss_pred CC--------------CHHHHHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecC
Q psy17537 494 KK--------------DILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFN 559 (773)
Q Consensus 494 ~~--------------sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~ 559 (773)
.. .|-+.|..|...-.-+ + -+...+ ++..+.++|++|++|++||.-+ ..-..|..
T Consensus 288 ~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~----~~~~~~-~rf~l~k~P~ylifh~~rF~kN--n~f~ekNp 356 (442)
T KOG2026|consen 288 PPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----V----VTPKLA-MRFRLTKLPRYLIFHMKRFKKN--NFFKEKNP 356 (442)
T ss_pred CCcccchhhhcccccchHHHHHHHhcCceeee----e----cchhhh-hheeeecCCceEEEEeeecccc--CcccccCC
Confidence 43 4667777665422211 0 012233 8889999999999999999843 45677899
Q ss_pred ceeeec-ccccccccccc---CCCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccc
Q psy17537 560 DRFEFY-DRIELDDFLKE---KGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPR 635 (773)
Q Consensus 560 ~~v~fP-~~Ldl~~~~~~---~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 635 (773)
+-++|| ..+++.++... ....-..|.|.|=++|. ..-|||...+++.+.++
T Consensus 357 Tl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~k----------------------- 411 (442)
T KOG2026|consen 357 TLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEK----------------------- 411 (442)
T ss_pred ceeeccCCccchhhhhhhcccccCccccccchhhhhcC--cccCceEEEEEeCCCcc-----------------------
Confidence 999999 66666554432 22333779999999998 57899999999977776
Q ss_pred cccccccccccccccccCCCCCcEEEEeCccceecCHHHHH
Q psy17537 636 RKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAV 676 (773)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~ 676 (773)
||..+|-+|++...+-+.
T Consensus 412 -----------------------W~eiqdl~v~e~~~qmi~ 429 (442)
T KOG2026|consen 412 -----------------------WYEIQDLHVTERLPQMIF 429 (442)
T ss_pred -----------------------eEEecccchhhhhhHHHH
Confidence 999999999998776653
No 41
>KOG1863|consensus
Probab=99.83 E-value=1.1e-20 Score=230.74 Aligned_cols=240 Identities=39% Similarity=0.599 Sum_probs=197.0
Q ss_pred ccEEEEEEcCccccccccCCCCeEecCccEEEEEEeCCcc---------------------------------------c
Q psy17537 66 EVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLLV---------------------------------------R 106 (773)
Q Consensus 66 ~~~~~w~I~~fs~l~~~~~S~~F~vgg~~W~i~~yP~g~~---------------------------------------~ 106 (773)
...++|.+.+...+..+..||.|-.|+..|+|++.|+|+. .
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 105 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLLYRALSSNFGAGATKWKILIAPKVNSLQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDNLPDPE 105 (1093)
T ss_pred cccccccCcCcchhhhHhcCccccccccceeeeeccccCcccceeEEeeeccCCCCcceEecchhhhccccCCCCchhhh
Confidence 4566688888887777888999999999999999997711 1
Q ss_pred ceeeeeeeccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCCCCcc--cccCCCCCcc-cceeeCCCceehHHH
Q psy17537 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGV--SWDSKKHTGY-VGLKNQGATCYMNSL 183 (773)
Q Consensus 107 ~~~~~~f~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~~~~~--~~~~~~~~g~-~GL~NlGnTCy~Ns~ 183 (773)
+..+|.|.....+|||.+|+.++++.++..||+++|++.+++.|.+..+++. .|++++.+|+ +||.|+||||||||+
T Consensus 106 ~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTCY~Nsl 185 (1093)
T KOG1863|consen 106 KAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATCYVNSL 185 (1093)
T ss_pred hhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccchhhhhhcCCCCccccCCCceeeehHH
Confidence 2467889999999999999999999999999999999999999999999988 9999999999 999999999999999
Q ss_pred HHHHhccHHHHHHHhcCC--CCCCCCccHHHHHHHHHHHHHhcCCC-CcChHHHHHHcCCCCCCCCCCCChhhhhhhhcC
Q psy17537 184 LQTLYFTNQLRKAVYKMP--TESDDSNKSVALALQRVFHELQFSDK-PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNG 260 (773)
Q Consensus 184 LQ~L~~~~~fr~~~~~~~--~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~QqDa~E~l~~~~~ 260 (773)
||+||+++.||+.++.++ .....+..+++.+||.||..|+.+.+ ++.+..++.+++|.....++|||+|||++++.+
T Consensus 186 lQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~~~~~~QqDvqEf~~~l~d 265 (1093)
T KOG1863|consen 186 LQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDSNDSFEQQDVQEFLTKLLD 265 (1093)
T ss_pred HHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhcccccHHhhhhHHHHHHHHHH
Confidence 999999999999999999 56667778899999999999999997 899999999999999889999999999998765
Q ss_pred CCCCCCccccccchhhcCCCCCCCCCccccccceeeeecCCCccccccccccc
Q psy17537 261 ETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313 (773)
Q Consensus 261 e~~~~~ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~~~~~d~G~s~f~~~~dL 313 (773)
-......... ....++ ........+.+.+...+++-++-..+.++
T Consensus 266 ~LE~~~~~~~---~~~~l~-----~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ 310 (1093)
T KOG1863|consen 266 WLEDSMIDAK---VENTLQ-----DLFTGKMKSVIKCIDVDFESSRSESFLDL 310 (1093)
T ss_pred HHHhhccchh---hhhhhh-----hhhcCCcceEEEEEeeeeeccccccccCc
Confidence 4433221111 111222 22233355566666666655444444444
No 42
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.71 E-value=1.7e-17 Score=156.33 Aligned_cols=91 Identities=64% Similarity=1.113 Sum_probs=78.8
Q ss_pred ccEEEEEEcCccccccccCCCCeEecCccEEEEEEeCCcc----------------------------------------
Q psy17537 66 EVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLLV---------------------------------------- 105 (773)
Q Consensus 66 ~~~~~w~I~~fs~l~~~~~S~~F~vgg~~W~i~~yP~g~~---------------------------------------- 105 (773)
.++|+|+|+|||++.+.++|++|.+|||+|+|.+||+|+.
T Consensus 2 ~~~~~~~I~~~S~l~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~~ 81 (137)
T cd03772 2 EATFSFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKDD 81 (137)
T ss_pred CcEEEEEECCcccCCCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCCC
Confidence 5899999999999988899999999999999999999811
Q ss_pred ----cceeeeeeeccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCCCC
Q psy17537 106 ----RRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPH 156 (773)
Q Consensus 106 ----~~~~~~~f~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~~~ 156 (773)
.....+.|......|||.+||++++|.++++|||+||+++|+|+|++..++
T Consensus 82 ~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~~~ 136 (137)
T cd03772 82 EPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADAPH 136 (137)
T ss_pred cccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeCCC
Confidence 001234676677899999999999999889999999999999999987654
No 43
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.68 E-value=5.7e-17 Score=151.96 Aligned_cols=84 Identities=21% Similarity=0.526 Sum_probs=71.9
Q ss_pred EEEEEEcCccccccccCCCCeEecCccEEEEEEeCCccc--------------------------c--------------
Q psy17537 68 RFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLLVR--------------------------R-------------- 107 (773)
Q Consensus 68 ~~~w~I~~fs~l~~~~~S~~F~vgg~~W~i~~yP~g~~~--------------------------~-------------- 107 (773)
+|+|+|+|||.+.+.+.|++|.||||+|+|.+||+|+.. .
T Consensus 2 ~f~w~I~~fS~~~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~ 81 (134)
T cd03775 2 SFTWRIKNWSELEKKVHSPKFKCGGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPS 81 (134)
T ss_pred cEEEEECCcccCCcceeCCCEEECCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCc
Confidence 699999999999889999999999999999999998210 0
Q ss_pred -----eeeeeeeccCCCcccccccCcccccCC----CCCccccCcEEEEEEee
Q psy17537 108 -----RIQHLFFIKENDWGFSHFMTFSDLLDP----DKGFIKDDSIILEVCVQ 151 (773)
Q Consensus 108 -----~~~~~f~~~~~~wG~~~fi~~~~l~~~----~~g~l~~d~~~i~~~v~ 151 (773)
...++|+....+|||.+||++++|.++ .+|||+||+++|+++|.
T Consensus 82 ~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 82 IQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred cceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 123567766789999999999999854 68999999999999884
No 44
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.55 E-value=4.3e-15 Score=140.31 Aligned_cols=87 Identities=22% Similarity=0.336 Sum_probs=70.9
Q ss_pred ccEEEEEEcCccccc----cccCCCCeEecCc---cEEEEEEeCCcc-----------------------------cc--
Q psy17537 66 EVRFSFKVENIHNLK----DTALSPPHYARNL---PWKIMFMVKLLV-----------------------------RR-- 107 (773)
Q Consensus 66 ~~~~~w~I~~fs~l~----~~~~S~~F~vgg~---~W~i~~yP~g~~-----------------------------~~-- 107 (773)
.-+|+|+|+|||.++ +.+.|++|.|||| +|+|.+||+|.. .+
T Consensus 4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~~~~v~a~f~~~l~n~~ 83 (139)
T cd03774 4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAK 83 (139)
T ss_pred EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCCCCcEEEEEEEEEEecC
Confidence 468999999999874 4577999999995 999999999921 00
Q ss_pred ---------eeeeeeeccCCCcccccccCcccccCCCCCccccCcEEEEEEeecC
Q psy17537 108 ---------RIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQAD 153 (773)
Q Consensus 108 ---------~~~~~f~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~ 153 (773)
...+.|. ...+|||.+||++++|.++.+|||.||+++|+|+|.|+
T Consensus 84 ~~~~~~~~~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~ 137 (139)
T cd03774 84 GEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVV 137 (139)
T ss_pred CCeeeeecccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEE
Confidence 0123343 34689999999999999888999999999999999985
No 45
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.53 E-value=7.6e-15 Score=137.43 Aligned_cols=85 Identities=22% Similarity=0.457 Sum_probs=67.8
Q ss_pred cccEEEEEEcCccccc---cccCCCCeEecCccEEEEEEeCCccc-----------------------------c-----
Q psy17537 65 SEVRFSFKVENIHNLK---DTALSPPHYARNLPWKIMFMVKLLVR-----------------------------R----- 107 (773)
Q Consensus 65 ~~~~~~w~I~~fs~l~---~~~~S~~F~vgg~~W~i~~yP~g~~~-----------------------------~----- 107 (773)
+.++++|+|+|||.++ +.++|++|.||||+|+|.+||+|+.. +
T Consensus 3 ~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~~~ 82 (132)
T cd03773 3 PYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGLGEASKYEYRVEMVHQANPT 82 (132)
T ss_pred CCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCCCCceeEEEEEEEEcCCCCc
Confidence 4578999999999985 35789999999999999999999210 0
Q ss_pred -----eeeeeeeccCCCcccccccCcccccCCCCCcccc--CcEEEEEEeec
Q psy17537 108 -----RIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKD--DSIILEVCVQA 152 (773)
Q Consensus 108 -----~~~~~f~~~~~~wG~~~fi~~~~l~~~~~g~l~~--d~~~i~~~v~v 152 (773)
...+.|.. ..+|||.+||++++|. ++|||+| |+++|+|.|+-
T Consensus 83 ~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~p 131 (132)
T cd03773 83 KNIKREFASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVRP 131 (132)
T ss_pred cceEEeccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEeC
Confidence 01223432 4679999999999995 4799999 99999999873
No 46
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.52 E-value=1.2e-14 Score=156.82 Aligned_cols=87 Identities=29% Similarity=0.419 Sum_probs=71.9
Q ss_pred ccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCC--------------C--------CccHHHHHHHHHHHHHhcC
Q psy17537 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD--------------D--------SNKSVALALQRVFHELQFS 225 (773)
Q Consensus 168 ~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~--------------~--------~~~~l~~~l~~l~~~l~~~ 225 (773)
.+||.|+||||||||+||+|+++++||++++.+..... . ....++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 37999999999999999999999999999998762210 0 1126899999999999988
Q ss_pred C-CCcChHHHHHHcCCCCCCCCCCCChhhhhhhhcC
Q psy17537 226 D-KPVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNG 260 (773)
Q Consensus 226 ~-~~~~~~~~~~~l~~~~~~~~~QqDa~E~l~~~~~ 260 (773)
. .++.|..++..+.+ .||||+||+..++.
T Consensus 81 ~~~~v~P~~~l~~l~~------~QQDa~Ef~~~lld 110 (343)
T cd02666 81 NTRSVTPSKELAYLAL------RQQDVTECIDNVLF 110 (343)
T ss_pred CCCccCcHHHHHhccc------cccchHHHHHHHHH
Confidence 7 56889998887653 89999999987654
No 47
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.50 E-value=2.8e-14 Score=160.31 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=83.1
Q ss_pred CCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCC--CCCccHHHHHHHHHHHHHhcCC---CCcChHHHHHH
Q psy17537 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES--DDSNKSVALALQRVFHELQFSD---KPVGTKKLTKS 237 (773)
Q Consensus 163 ~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~---~~~~~~~~~~~ 237 (773)
...+|++||.|+||||||||+||+|+++|+||++++...... ......+..++..++..+++.. ..++|.+++.+
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~ 193 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQA 193 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHH
Confidence 346799999999999999999999999999999999765432 1234578999999999999764 47999999888
Q ss_pred cC---CCCCCCCCCCChhhhhhhhcCCC
Q psy17537 238 FG---WETLDSFMQHDVQEFLRVCNGET 262 (773)
Q Consensus 238 l~---~~~~~~~~QqDa~E~l~~~~~e~ 262 (773)
+. .+.|.++.||||||||..+++..
T Consensus 194 l~~~~~~~f~~~~QqDA~EFl~~LLd~L 221 (440)
T cd02669 194 VSKVSKKKFSITEQSDPVEFLSWLLNTL 221 (440)
T ss_pred HHhhcccccCCcccCCHHHHHHHHHHHH
Confidence 86 34688999999999998876533
No 48
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.48 E-value=3.6e-14 Score=153.17 Aligned_cols=94 Identities=21% Similarity=0.339 Sum_probs=76.6
Q ss_pred ceeeCCCceehHHHHHHHhccHHHHHHHhcCCC----CCCCCccHHHHHHHHHHHHHhcCC---------------CCcC
Q psy17537 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT----ESDDSNKSVALALQRVFHELQFSD---------------KPVG 230 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~----~~~~~~~~l~~~l~~l~~~l~~~~---------------~~~~ 230 (773)
||.|+||||||||+||||+++++||++++.... ....+..++.++|++++..|+... .++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 899999999999999999999999999976431 222345579999999999987642 3578
Q ss_pred hHHHHHHcC--CCCCCCCCCCChhhhhhhhcCCCC
Q psy17537 231 TKKLTKSFG--WETLDSFMQHDVQEFLRVCNGETE 263 (773)
Q Consensus 231 ~~~~~~~l~--~~~~~~~~QqDa~E~l~~~~~e~~ 263 (773)
|..++..+. ++.|..+.|||||||++.+.+...
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~ 115 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLD 115 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHH
Confidence 999988886 568899999999999998765443
No 49
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.1e-14 Score=155.81 Aligned_cols=101 Identities=31% Similarity=0.385 Sum_probs=84.6
Q ss_pred CCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCC-------CCCCCccHHHHHHHHHHHHHhcCCC-CcChHHHH
Q psy17537 164 KHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT-------ESDDSNKSVALALQRVFHELQFSDK-PVGTKKLT 235 (773)
Q Consensus 164 ~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~-------~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~~~~ 235 (773)
++.|.+||.|+||||||||.||||.|++.+|+||+.-.. ++-+-.+.++.++..|+..+..... ++.|..+.
T Consensus 261 ke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK 340 (823)
T COG5560 261 KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFK 340 (823)
T ss_pred hhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHH
Confidence 446999999999999999999999999999999986542 2334456899999999999987664 78999998
Q ss_pred HHcC--CCCCCCCCCCChhhhhhhhcCCCCC
Q psy17537 236 KSFG--WETLDSFMQHDVQEFLRVCNGETES 264 (773)
Q Consensus 236 ~~l~--~~~~~~~~QqDa~E~l~~~~~e~~~ 264 (773)
..++ ...|.|+.|||.|||+..+++..+.
T Consensus 341 ~tIG~fn~~fsGy~QQDSqEFiaflLDgLHE 371 (823)
T COG5560 341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHE 371 (823)
T ss_pred HHHhhhHHHhcCccchhHHHHHHHHHHHHHH
Confidence 8888 6799999999999999887665443
No 50
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.48 E-value=4.6e-14 Score=151.88 Aligned_cols=93 Identities=26% Similarity=0.419 Sum_probs=78.5
Q ss_pred ceeeCCCceehHHHHHHHhccHHHHHHHhcCCCC---CCCCccHHHHHHHHHHHHHhcCCCCcChHHHHHHcC--CCCC-
Q psy17537 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE---SDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG--WETL- 243 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~---~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~l~--~~~~- 243 (773)
||.|+||||||||+||+|+++|+||+++++.... .......+..+|++||..|+.+..++.|..++..+. .+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 8999999999999999999999999999987653 223456899999999999999888899999988875 3444
Q ss_pred -----CCCCCCChhhhhhhhcCCC
Q psy17537 244 -----DSFMQHDVQEFLRVCNGET 262 (773)
Q Consensus 244 -----~~~~QqDa~E~l~~~~~e~ 262 (773)
..++|||||||+..+.+..
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L 104 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVL 104 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHH
Confidence 4569999999999876533
No 51
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.47 E-value=6.5e-14 Score=151.88 Aligned_cols=92 Identities=27% Similarity=0.373 Sum_probs=76.4
Q ss_pred ceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCC-CCcChHH-HHHHcCCCCCCCCC
Q psy17537 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSD-KPVGTKK-LTKSFGWETLDSFM 247 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~~~~-~~~~l~~~~~~~~~ 247 (773)
||.|+||||||||+||+|+++++||+++++...........+..+|+.+|..|..+. .++.|.. ++.+...+.|..+.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~~~~f~~~~ 80 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASRPPWFTPGS 80 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhcccccCCCC
Confidence 899999999999999999999999999999875433445578889999999887654 4566665 77777667888999
Q ss_pred CCChhhhhhhhcCC
Q psy17537 248 QHDVQEFLRVCNGE 261 (773)
Q Consensus 248 QqDa~E~l~~~~~e 261 (773)
|||||||+..+.+.
T Consensus 81 QqDa~EFl~~lLd~ 94 (327)
T cd02664 81 QQDCSEYLRYLLDR 94 (327)
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999987653
No 52
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.45 E-value=1e-13 Score=149.78 Aligned_cols=96 Identities=29% Similarity=0.483 Sum_probs=71.5
Q ss_pred cCCCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHH---HHHhcCC-CCcChHHHHH
Q psy17537 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVF---HELQFSD-KPVGTKKLTK 236 (773)
Q Consensus 161 ~~~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~---~~l~~~~-~~~~~~~~~~ 236 (773)
..+...|++||.|+||||||||+||+|+++|.||+.++.+.... .....++.++ ..++... ....|..++.
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-----~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~ 91 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-----SSVEQLQSSFLLNPEKYNDELANQAPRRLLN 91 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-----CcHHHHHHHHHHHHHHHhhcccccCHHHHHH
Confidence 44567899999999999999999999999999999998765211 1122334333 3333333 3456889988
Q ss_pred HcC--CCCCCCCCCCChhhhhhhhcCC
Q psy17537 237 SFG--WETLDSFMQHDVQEFLRVCNGE 261 (773)
Q Consensus 237 ~l~--~~~~~~~~QqDa~E~l~~~~~e 261 (773)
+++ .+.|..+.||||||||..+++.
T Consensus 92 ~l~~~~~~f~~~~QQDA~EFl~~LLd~ 118 (332)
T cd02671 92 ALREVNPMYEGYLQHDAQEVLQCILGN 118 (332)
T ss_pred HHHHhccccCCccccCHHHHHHHHHHH
Confidence 887 4678999999999999987653
No 53
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.43 E-value=1.8e-13 Score=148.34 Aligned_cols=88 Identities=40% Similarity=0.653 Sum_probs=74.6
Q ss_pred ceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCC-----------CCccHHHHHHHHHHHHHhcCCC-CcChHHHHHH
Q psy17537 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-----------DSNKSVALALQRVFHELQFSDK-PVGTKKLTKS 237 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~-----------~~~~~l~~~l~~l~~~l~~~~~-~~~~~~~~~~ 237 (773)
||.|+||||||||+||+|+++++||++++....... .....+..+|+.||..|+.+.. .+.|..++.+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999998764321 1235799999999999997765 5899999999
Q ss_pred cCCCCCCCCCCCChhhhhhhhcC
Q psy17537 238 FGWETLDSFMQHDVQEFLRVCNG 260 (773)
Q Consensus 238 l~~~~~~~~~QqDa~E~l~~~~~ 260 (773)
+. +...+||||+||+..+.+
T Consensus 81 l~---~~~~~QqDa~EFl~~lLd 100 (324)
T cd02668 81 LG---LDTGQQQDAQEFSKLFLS 100 (324)
T ss_pred hC---CCCccccCHHHHHHHHHH
Confidence 85 567799999999987665
No 54
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.42 E-value=1.4e-13 Score=131.73 Aligned_cols=83 Identities=18% Similarity=0.371 Sum_probs=65.2
Q ss_pred cEEEEEEcCcccccc--------ccCCCCeEec--CccEEEEEEeCCccc------------------------------
Q psy17537 67 VRFSFKVENIHNLKD--------TALSPPHYAR--NLPWKIMFMVKLLVR------------------------------ 106 (773)
Q Consensus 67 ~~~~w~I~~fs~l~~--------~~~S~~F~vg--g~~W~i~~yP~g~~~------------------------------ 106 (773)
|+|+|+|.|||.+++ .++|++|.|| ||+|+|.+||+|...
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 689999999999853 4679999999 999999999999310
Q ss_pred ----ce-----ee---e---------eee-----ccCCCcccccccCcccccCCCCCccccCcEEEEEEee
Q psy17537 107 ----RR-----IQ---H---------LFF-----IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 151 (773)
Q Consensus 107 ----~~-----~~---~---------~f~-----~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~ 151 (773)
++ .. + .|. ....+|||.+||++++|. +.|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEEC
Confidence 00 00 1 121 135689999999999995 45999999999999983
No 55
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.42 E-value=1.6e-13 Score=149.58 Aligned_cols=94 Identities=68% Similarity=1.089 Sum_probs=75.6
Q ss_pred cccceeeCCCceehHHHHHHHhccHHHHHHHhcCC-CCCCCCccHHHHHHHHHHHHHhcCCCCcChHHH---HHHcCCCC
Q psy17537 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP-TESDDSNKSVALALQRVFHELQFSDKPVGTKKL---TKSFGWET 242 (773)
Q Consensus 167 g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~-~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~---~~~l~~~~ 242 (773)
|++||.|+||||||||+||+|+++++|+++++... ........++..+|+.+|..|..+......... ...+.+..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWDS 80 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCCC
Confidence 79999999999999999999999999999999873 222334567999999999999877643222222 45666778
Q ss_pred CCCCCCCChhhhhhhhcC
Q psy17537 243 LDSFMQHDVQEFLRVCNG 260 (773)
Q Consensus 243 ~~~~~QqDa~E~l~~~~~ 260 (773)
+..+.||||+||+..+.+
T Consensus 81 ~~~~~QqDa~Efl~~ll~ 98 (334)
T cd02659 81 LNTFEQHDVQEFFRVLFD 98 (334)
T ss_pred CCcccchhHHHHHHHHHH
Confidence 889999999999987654
No 56
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.39 E-value=1.5e-13 Score=131.04 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=63.6
Q ss_pred cEEEEEEcCcccccc--------ccCCCCeEe--cCccEEEEEEeCCcc-------------------------------
Q psy17537 67 VRFSFKVENIHNLKD--------TALSPPHYA--RNLPWKIMFMVKLLV------------------------------- 105 (773)
Q Consensus 67 ~~~~w~I~~fs~l~~--------~~~S~~F~v--gg~~W~i~~yP~g~~------------------------------- 105 (773)
|+|.|+|.|||.+++ .+.|++|.+ |||+|+|.+||+|..
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 689999999997652 266999985 799999999999921
Q ss_pred ---ccee---------------eeeeec-----cCCCcccccccCcccccCCCCCccccCcEEEEEEee
Q psy17537 106 ---RRRI---------------QHLFFI-----KENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 151 (773)
Q Consensus 106 ---~~~~---------------~~~f~~-----~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~ 151 (773)
.++. .+.|.. ....|||.+||++++|. .+|||+||+++|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence 0000 011321 23579999999999994 57999999999999984
No 57
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.38 E-value=4.5e-13 Score=145.74 Aligned_cols=94 Identities=30% Similarity=0.437 Sum_probs=76.6
Q ss_pred cceeeCCCceehHHHHHHHhccHHHHHHHhcCCCC----CCCCccHHHHHHHHHHHHHhcCC--CCcChHHHHHHcC--C
Q psy17537 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE----SDDSNKSVALALQRVFHELQFSD--KPVGTKKLTKSFG--W 240 (773)
Q Consensus 169 ~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~----~~~~~~~l~~~l~~l~~~l~~~~--~~~~~~~~~~~l~--~ 240 (773)
.||.|+||||||||+||+|+++|.||++++..... ......++.++|+.+|..|+.+. .++.|..++.++. .
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 49999999999999999999999999999887533 23345689999999999995443 3678888888874 3
Q ss_pred CCCCCCCCCChhhhhhhhcCCC
Q psy17537 241 ETLDSFMQHDVQEFLRVCNGET 262 (773)
Q Consensus 241 ~~~~~~~QqDa~E~l~~~~~e~ 262 (773)
+.|.++.|||||||+..+.+..
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l 102 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQL 102 (328)
T ss_pred hhhcccccccHHHHHHHHHHHH
Confidence 4678899999999999776533
No 58
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.32 E-value=1e-12 Score=124.11 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=66.5
Q ss_pred cEEEEEEcCccccc------c--ccCCCCe--EecCccEEEEEEeCCcc-------------------------------
Q psy17537 67 VRFSFKVENIHNLK------D--TALSPPH--YARNLPWKIMFMVKLLV------------------------------- 105 (773)
Q Consensus 67 ~~~~w~I~~fs~l~------~--~~~S~~F--~vgg~~W~i~~yP~g~~------------------------------- 105 (773)
|+|.|+|.|||+++ + .+.|++| .+|||+|+|.+||||..
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 67999999999886 2 4779999 99999999999999911
Q ss_pred ---cce---------e------eeeeecc----CCCcccccccCcccccCCCCCccccCcEEEEEEe
Q psy17537 106 ---RRR---------I------QHLFFIK----ENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 150 (773)
Q Consensus 106 ---~~~---------~------~~~f~~~----~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v 150 (773)
.++ . .+.|... +..||+.+||++++|...+.+||.||++.|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 000 0 1335433 4579999999999996545699999999999987
No 59
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.31 E-value=1.6e-12 Score=139.44 Aligned_cols=73 Identities=37% Similarity=0.651 Sum_probs=64.1
Q ss_pred ceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCCC---CcChHHHHHHcC--CCCCC
Q psy17537 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK---PVGTKKLTKSFG--WETLD 244 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~---~~~~~~~~~~l~--~~~~~ 244 (773)
||.|+||||||||+||+|++ ..+..+|+.+|..|+.+.. .++|..++.++. .+.|.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~ 61 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFD 61 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCC
Confidence 89999999999999999998 4788899999999987653 489999999997 45799
Q ss_pred CCCCCChhhhhhhhcCC
Q psy17537 245 SFMQHDVQEFLRVCNGE 261 (773)
Q Consensus 245 ~~~QqDa~E~l~~~~~e 261 (773)
++.||||||||..+++.
T Consensus 62 ~~~QqDA~EFl~~lLd~ 78 (300)
T cd02663 62 NYMHQDAHEFLNFLLNE 78 (300)
T ss_pred CCccccHHHHHHHHHHH
Confidence 99999999999977653
No 60
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.30 E-value=2.6e-12 Score=125.85 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=67.9
Q ss_pred ccEEEEEEcCccccc------c--ccCCCCeEec--CccEEEEEEeCCcc------------------------------
Q psy17537 66 EVRFSFKVENIHNLK------D--TALSPPHYAR--NLPWKIMFMVKLLV------------------------------ 105 (773)
Q Consensus 66 ~~~~~w~I~~fs~l~------~--~~~S~~F~vg--g~~W~i~~yP~g~~------------------------------ 105 (773)
.|+|.|+|.|||.++ + .++|++|++| ||+|+|.+||||..
T Consensus 38 ~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~~ 117 (186)
T cd03777 38 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV 117 (186)
T ss_pred ceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEEE
Confidence 699999999999875 2 4779999999 99999999999921
Q ss_pred ----ccee---------------eeeee-cc---CCCcccccccCcccccCCCCCccccCcEEEEEEeec
Q psy17537 106 ----RRRI---------------QHLFF-IK---ENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQA 152 (773)
Q Consensus 106 ----~~~~---------------~~~f~-~~---~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v 152 (773)
.++. ...|. .. +..||+++||++++| ++++||+||++.|+|.|..
T Consensus 118 tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~L--e~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 118 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVL--ENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHh--ccCCcEeCCEEEEEEEEec
Confidence 0011 12354 22 457999999999999 4689999999999998863
No 61
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.29 E-value=2.6e-12 Score=123.18 Aligned_cols=83 Identities=20% Similarity=0.395 Sum_probs=63.9
Q ss_pred cEEEEEEcCcccccc--------ccCCCCeEec--CccEEEEEEeCCcc-------------------------------
Q psy17537 67 VRFSFKVENIHNLKD--------TALSPPHYAR--NLPWKIMFMVKLLV------------------------------- 105 (773)
Q Consensus 67 ~~~~w~I~~fs~l~~--------~~~S~~F~vg--g~~W~i~~yP~g~~------------------------------- 105 (773)
|+|.|+|.|||.+++ .+.|++|.+| ||+|+|.+||||..
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 679999999998762 3669999999 99999999999811
Q ss_pred ---cceee----------eeeec-----------------cCCCcccccccCcccccCCCCCccccCcEEEEEEee
Q psy17537 106 ---RRRIQ----------HLFFI-----------------KENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 151 (773)
Q Consensus 106 ---~~~~~----------~~f~~-----------------~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~ 151 (773)
.++.. ..|.. .+..|||..||++++| +++|||+||+++|+|+|.
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~L--e~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDL--KKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHH--hhCCcccCCEEEEEEEeC
Confidence 00000 11211 2346999999999999 468999999999999873
No 62
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.27 E-value=3.8e-12 Score=136.78 Aligned_cols=92 Identities=24% Similarity=0.286 Sum_probs=74.8
Q ss_pred cceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCC--CCCccHHHHHHHHHHHHHhcCC-CCcChHHHHHHcC--CCCC
Q psy17537 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES--DDSNKSVALALQRVFHELQFSD-KPVGTKKLTKSFG--WETL 243 (773)
Q Consensus 169 ~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~-~~~~~~~~~~~l~--~~~~ 243 (773)
+||.|+||||||||+||+|+++|+|+++++...... .....++.++|+.++..+..+. ....|..+..++. ++.|
T Consensus 2 ~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~f 81 (304)
T cd02661 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKHF 81 (304)
T ss_pred CCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHhh
Confidence 799999999999999999999999999998755322 2334578999999998887544 4677777776665 5678
Q ss_pred CCCCCCChhhhhhhhcC
Q psy17537 244 DSFMQHDVQEFLRVCNG 260 (773)
Q Consensus 244 ~~~~QqDa~E~l~~~~~ 260 (773)
..+.||||+||+..+.+
T Consensus 82 ~~~~qqDa~Efl~~ll~ 98 (304)
T cd02661 82 RIGRQEDAHEFLRYLLD 98 (304)
T ss_pred cCcchhhHHHHHHHHHH
Confidence 89999999999987654
No 63
>KOG0944|consensus
Probab=99.24 E-value=1e-11 Score=136.43 Aligned_cols=98 Identities=22% Similarity=0.375 Sum_probs=81.5
Q ss_pred CCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCC----CCCCCCccHHHHHHHHHHHHHhcCCC-----------
Q psy17537 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP----TESDDSNKSVALALQRVFHELQFSDK----------- 227 (773)
Q Consensus 163 ~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~----~~~~~~~~~l~~~l~~l~~~l~~~~~----------- 227 (773)
--++|++||.|+||+|||||++|+|+.++.|........ .....+-+.|-+++.+|...|.++..
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qn 381 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQN 381 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccC
Confidence 457899999999999999999999999999988776652 22345567899999999999976652
Q ss_pred CcChHHHHHHcC--CCCCCCCCCCChhhhhhhhcC
Q psy17537 228 PVGTKKLTKSFG--WETLDSFMQHDVQEFLRVCNG 260 (773)
Q Consensus 228 ~~~~~~~~~~l~--~~~~~~~~QqDa~E~l~~~~~ 260 (773)
.++|..|...++ .+.|....||||+|||+++..
T Consensus 382 gIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ 416 (763)
T KOG0944|consen 382 GISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLE 416 (763)
T ss_pred CcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHH
Confidence 367888888777 568999999999999998754
No 64
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.23 E-value=7.6e-12 Score=131.16 Aligned_cols=92 Identities=28% Similarity=0.436 Sum_probs=75.2
Q ss_pred ccceeeCCCceehHHHHHHHhccHHHHHHHhcCC-------CCCCCCccHHHHHHHHHHHHHhcC---CCCcChHHHHHH
Q psy17537 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP-------TESDDSNKSVALALQRVFHELQFS---DKPVGTKKLTKS 237 (773)
Q Consensus 168 ~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~-------~~~~~~~~~l~~~l~~l~~~l~~~---~~~~~~~~~~~~ 237 (773)
++||.|.||||||||+||+|+++++|++++.... .........+..+++.+|..|+.. ...+.|..+...
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 4799999999999999999999999999999861 223344557999999999999987 346888888887
Q ss_pred cC--CCCCCCCCCCChhhhhhhhc
Q psy17537 238 FG--WETLDSFMQHDVQEFLRVCN 259 (773)
Q Consensus 238 l~--~~~~~~~~QqDa~E~l~~~~ 259 (773)
+. ...|..+.||||+||+..+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll 104 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLL 104 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHH
T ss_pred ccccccccccccccchhhhhcccc
Confidence 76 34578999999999997654
No 65
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.22 E-value=7e-12 Score=117.87 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=64.9
Q ss_pred cEEEEEEcCccccc--------cccCCCCeEec--CccEEEEEEeCCcc-------------------------------
Q psy17537 67 VRFSFKVENIHNLK--------DTALSPPHYAR--NLPWKIMFMVKLLV------------------------------- 105 (773)
Q Consensus 67 ~~~~w~I~~fs~l~--------~~~~S~~F~vg--g~~W~i~~yP~g~~------------------------------- 105 (773)
|+|.|+|+||++.. ..++||+|..+ ||+|+|.+||||..
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 68999999999543 13679999876 99999999999911
Q ss_pred ---cce-----------e---eeeee----ccCCCcccccccCcccccCCCCCccccCcEEEEEEee
Q psy17537 106 ---RRR-----------I---QHLFF----IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 151 (773)
Q Consensus 106 ---~~~-----------~---~~~f~----~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~ 151 (773)
.++ . .+.|. ..+..||+.+||++++|.....+||+||++.|+|+|.
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 000 0 13364 3445799999999999953334999999999999873
No 66
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.22 E-value=1e-11 Score=118.99 Aligned_cols=83 Identities=17% Similarity=0.289 Sum_probs=63.3
Q ss_pred cEEEEEEcCccccc-c-----ccCCCCe-EecCccEEEEEEeCCcc-------------------------c--------
Q psy17537 67 VRFSFKVENIHNLK-D-----TALSPPH-YARNLPWKIMFMVKLLV-------------------------R-------- 106 (773)
Q Consensus 67 ~~~~w~I~~fs~l~-~-----~~~S~~F-~vgg~~W~i~~yP~g~~-------------------------~-------- 106 (773)
.+|+|+|.|||.++ + .++|++| ++|||+|+|.+||||.. .
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~L 81 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMTL 81 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEEE
Confidence 57999999999985 2 4779998 99999999999999821 0
Q ss_pred -ce--------eeee-----------------ee----------c-------cCCCcccccccCcccccCCCCCccccCc
Q psy17537 107 -RR--------IQHL-----------------FF----------I-------KENDWGFSHFMTFSDLLDPDKGFIKDDS 143 (773)
Q Consensus 107 -~~--------~~~~-----------------f~----------~-------~~~~wG~~~fi~~~~l~~~~~g~l~~d~ 143 (773)
++ ..++ |. . ...+|||+.||++++|. +.+||+||+
T Consensus 82 lDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk~dt 159 (167)
T cd03771 82 LDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLKGDD 159 (167)
T ss_pred ECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCcCCE
Confidence 01 0000 11 1 22379999999999996 467999999
Q ss_pred EEEEEEee
Q psy17537 144 IILEVCVQ 151 (773)
Q Consensus 144 ~~i~~~v~ 151 (773)
+.|.+++.
T Consensus 160 l~i~~~~~ 167 (167)
T cd03771 160 LIILLDFE 167 (167)
T ss_pred EEEEEEeC
Confidence 99999873
No 67
>KOG1865|consensus
Probab=99.21 E-value=8.8e-12 Score=135.65 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=78.7
Q ss_pred CcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCC--CCccHHHHHHHHHHHHHh-cCCCCcChHHHHHHcC--C
Q psy17537 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD--DSNKSVALALQRVFHELQ-FSDKPVGTKKLTKSFG--W 240 (773)
Q Consensus 166 ~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~--~~~~~l~~~l~~l~~~l~-~~~~~~~~~~~~~~l~--~ 240 (773)
.--+||.|+|||||+||+||||.+++++..+++...+... ...-++.++++..+.... ....++.|..++..|. .
T Consensus 106 ~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~~I~ 185 (545)
T KOG1865|consen 106 AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGHPISPSQILSNLRNIS 185 (545)
T ss_pred cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCCccChHHHHHhhhhhc
Confidence 3448999999999999999999999999999997764322 355688999998776654 4445999999998887 5
Q ss_pred CCCCCCCCCChhhhhhhhcC
Q psy17537 241 ETLDSFMQHDVQEFLRVCNG 260 (773)
Q Consensus 241 ~~~~~~~QqDa~E~l~~~~~ 260 (773)
..|..+.|.||||||+.+.+
T Consensus 186 ~~f~~grQEDAHEFLr~~vd 205 (545)
T KOG1865|consen 186 AHFGRGRQEDAHEFLRFTVD 205 (545)
T ss_pred ccccCCchhhHHHHHHHHHH
Confidence 68899999999999997654
No 68
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.8e-11 Score=122.75 Aligned_cols=99 Identities=22% Similarity=0.298 Sum_probs=72.1
Q ss_pred CCcccceeeCCCceehHHHHHHHhccHHHHHHHh------cCCCCC-CCCcc-HHHHHHHHHHHHHh-cCCCCcChHHHH
Q psy17537 165 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVY------KMPTES-DDSNK-SVALALQRVFHELQ-FSDKPVGTKKLT 235 (773)
Q Consensus 165 ~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~------~~~~~~-~~~~~-~l~~~l~~l~~~l~-~~~~~~~~~~~~ 235 (773)
-...+||.|+|||||||++||||+.+..+...++ .++++. -+.+. .....+..+...|. .+.++++|..++
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 3456899999999999999999999999987332 333322 23333 44444444444443 445689999998
Q ss_pred HHcC--CCCCCCCCCCChhhhhhhhcCCCC
Q psy17537 236 KSFG--WETLDSFMQHDVQEFLRVCNGETE 263 (773)
Q Consensus 236 ~~l~--~~~~~~~~QqDa~E~l~~~~~e~~ 263 (773)
..+. .+.|.+.+|||+|||+.+..+...
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~fflD~LH 177 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLIFFLDLLH 177 (415)
T ss_pred HHHccccccccccchhhHHHHHHHHHHHHH
Confidence 8877 679999999999999988765433
No 69
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.19 E-value=7.9e-12 Score=132.57 Aligned_cols=63 Identities=30% Similarity=0.452 Sum_probs=50.1
Q ss_pred ceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCCCCcChHHHHHHcC--CCCCCCCC
Q psy17537 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG--WETLDSFM 247 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~ 247 (773)
||.|+||||||||+||+|+++++||++++. .|..++..+. .+.|..+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~------------------------------~P~~~~~~l~~~~~~f~~~~ 50 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE------------------------------TPKELFSQVCRKAPQFKGYQ 50 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH------------------------------CHHHHHHHHHHhhHhhcCCc
Confidence 899999999999999999999999999986 2222222222 34578899
Q ss_pred CCChhhhhhhhcCCC
Q psy17537 248 QHDVQEFLRVCNGET 262 (773)
Q Consensus 248 QqDa~E~l~~~~~e~ 262 (773)
||||+||+..+.+..
T Consensus 51 QqDA~Efl~~lld~l 65 (279)
T cd02667 51 QQDSHELLRYLLDGL 65 (279)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999999876543
No 70
>KOG1873|consensus
Probab=99.19 E-value=1.8e-11 Score=135.74 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=83.2
Q ss_pred CCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCC-------------------CCCccHHHHHHHHHHHHHhcC
Q psy17537 165 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES-------------------DDSNKSVALALQRVFHELQFS 225 (773)
Q Consensus 165 ~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~-------------------~~~~~~l~~~l~~l~~~l~~~ 225 (773)
..-..||.|||||||+||++|+|..++.+|+.+....... -.+...++.+|..+.......
T Consensus 202 ~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~ 281 (877)
T KOG1873|consen 202 GYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETT 281 (877)
T ss_pred cccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhcc
Confidence 3345699999999999999999999999999998776321 123456677777755545555
Q ss_pred CCCcChHHHHHHcC--CCCCCCCCCCChhhhhhhhcCCCCCCCcccccc
Q psy17537 226 DKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVCNGETESSAWSCYAS 272 (773)
Q Consensus 226 ~~~~~~~~~~~~l~--~~~~~~~~QqDa~E~l~~~~~e~~~~~ws~~~~ 272 (773)
...+.|+.++-.+. .+.|.+++|||+||+|+.+++....+..+...+
T Consensus 282 ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk 330 (877)
T KOG1873|consen 282 KSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKK 330 (877)
T ss_pred CCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHH
Confidence 56799999988887 679999999999999998877666655544443
No 71
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.13 E-value=4.8e-11 Score=113.41 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=64.6
Q ss_pred ccEEEEEEcCcccccc--------ccCCCCeEe--cCccEEEEEEeCCcc------------------------------
Q psy17537 66 EVRFSFKVENIHNLKD--------TALSPPHYA--RNLPWKIMFMVKLLV------------------------------ 105 (773)
Q Consensus 66 ~~~~~w~I~~fs~l~~--------~~~S~~F~v--gg~~W~i~~yP~g~~------------------------------ 105 (773)
.|+|+|+|.|||++.+ .++||+|.- +||+|+|.+||||..
T Consensus 18 ~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~~i 97 (164)
T cd03778 18 DGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV 97 (164)
T ss_pred CCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceeeEE
Confidence 6999999999998762 367999955 589999999999911
Q ss_pred ----cce-----eee---------ee----eccCCCcccccccCcccccCCCCCccccCcEEEEEEe
Q psy17537 106 ----RRR-----IQH---------LF----FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 150 (773)
Q Consensus 106 ----~~~-----~~~---------~f----~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v 150 (773)
.++ ... .| +..+..||++.|+++++|... .|||+||++.|+|.|
T Consensus 98 tl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 98 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 001 001 13 334567999999999999753 699999999999987
No 72
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.10 E-value=1.2e-10 Score=107.36 Aligned_cols=83 Identities=29% Similarity=0.568 Sum_probs=65.8
Q ss_pred cEEEEEEcCccc-cccccCCCCeEecCccEEEEEEeCCccc--------------------------------c------
Q psy17537 67 VRFSFKVENIHN-LKDTALSPPHYARNLPWKIMFMVKLLVR--------------------------------R------ 107 (773)
Q Consensus 67 ~~~~w~I~~fs~-l~~~~~S~~F~vgg~~W~i~~yP~g~~~--------------------------------~------ 107 (773)
++|+|+|.+|+. ..+.++|+.|.+||+.|+|.+||+|... +
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 479999999998 5577889999999999999999998410 0
Q ss_pred ---eeeeeee-ccCCCcccccccCcccccCCCCCccccCcEEEEEEee
Q psy17537 108 ---RIQHLFF-IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 151 (773)
Q Consensus 108 ---~~~~~f~-~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~ 151 (773)
...+.|. ....+|||.+||++++|.+. +++.||+++|+|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~ 126 (126)
T cd00121 81 LSKSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK 126 (126)
T ss_pred ceEeccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence 0112232 45689999999999999753 449999999999984
No 73
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.95 E-value=2.8e-10 Score=117.87 Aligned_cols=30 Identities=43% Similarity=0.598 Sum_probs=28.9
Q ss_pred ceeeCCCceehHHHHHHHhccHHHHHHHhc
Q psy17537 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYK 199 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~ 199 (773)
||.|+||||||||+||+|+++|+||+++..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~ 30 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEE 30 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHH
Confidence 899999999999999999999999999875
No 74
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=98.87 E-value=5.1e-10 Score=102.40 Aligned_cols=77 Identities=34% Similarity=0.574 Sum_probs=60.8
Q ss_pred EcCccccc--cccC-CCCeEecCccEEEEEEeCCc--ccc------------------------------------ee-e
Q psy17537 73 VENIHNLK--DTAL-SPPHYARNLPWKIMFMVKLL--VRR------------------------------------RI-Q 110 (773)
Q Consensus 73 I~~fs~l~--~~~~-S~~F~vgg~~W~i~~yP~g~--~~~------------------------------------~~-~ 110 (773)
|+|||+++ +..+ |+.|.+||++|+|.+||+|+ ... .. .
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 80 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGNGKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRIKS 80 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTESTTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEEEC
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCCcCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeeeee
Confidence 78999998 3344 58999999999999999985 200 11 1
Q ss_pred eeeeccCCCcccccccCcccccCCCCCccccCcEEEEEEeec
Q psy17537 111 HLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQA 152 (773)
Q Consensus 111 ~~f~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v 152 (773)
+.|. ...+|||.+||++++|.++. ||.||+++|+|+|+|
T Consensus 81 ~~F~-~~~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 81 HSFN-NPSSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEC-TTSEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred eEEe-eecccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence 3343 34789999999999997654 999999999999985
No 75
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.4e-09 Score=114.00 Aligned_cols=97 Identities=20% Similarity=0.322 Sum_probs=78.4
Q ss_pred cccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCC----CCCCccHHHHHHHHHHHHHhcCCC-----CcChHHHHHH
Q psy17537 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE----SDDSNKSVALALQRVFHELQFSDK-----PVGTKKLTKS 237 (773)
Q Consensus 167 g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~----~~~~~~~l~~~l~~l~~~l~~~~~-----~~~~~~~~~~ 237 (773)
.++||.|+||+||++|++|+|+....+..-+....+. ...+..++-+++.+|+..|..... .+.|..|...
T Consensus 302 ~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~ 381 (749)
T COG5207 302 PYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKML 381 (749)
T ss_pred CccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHH
Confidence 3899999999999999999999998887666544321 224456899999999999876652 4889999888
Q ss_pred cC--CCCCCCCCCCChhhhhhhhcCCCC
Q psy17537 238 FG--WETLDSFMQHDVQEFLRVCNGETE 263 (773)
Q Consensus 238 l~--~~~~~~~~QqDa~E~l~~~~~e~~ 263 (773)
++ .+.|..++||||+|||+.+++...
T Consensus 382 igq~h~eFg~~~QQDA~EFLlfLL~kir 409 (749)
T COG5207 382 IGQDHPEFGKFAQQDAHEFLLFLLEKIR 409 (749)
T ss_pred HcCCchhhhhhhhhhHHHHHHHHHHHHh
Confidence 87 568999999999999998876443
No 76
>KOG1868|consensus
Probab=98.79 E-value=4.2e-09 Score=120.33 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=80.6
Q ss_pred CCCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCC------CCCCCCccHHHHHHHHHHHHHhcCC--CCcChHH
Q psy17537 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP------TESDDSNKSVALALQRVFHELQFSD--KPVGTKK 233 (773)
Q Consensus 162 ~~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~------~~~~~~~~~l~~~l~~l~~~l~~~~--~~~~~~~ 233 (773)
.....|.+||.|+|||||||++||||+.++.||..++... .........+..+...++..++... .++.|..
T Consensus 295 ~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 295 STDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred cccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHH
Confidence 4467889999999999999999999999999997776553 1223344567778888888877664 4688999
Q ss_pred HHHHcC--CCCCCCCCCCChhhhhhhhcCCCC
Q psy17537 234 LTKSFG--WETLDSFMQHDVQEFLRVCNGETE 263 (773)
Q Consensus 234 ~~~~l~--~~~~~~~~QqDa~E~l~~~~~e~~ 263 (773)
++..+. .+.|.+..|||+|||+..+.+...
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lh 406 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLH 406 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhh
Confidence 999888 667888899999999987665433
No 77
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.50 E-value=7e-07 Score=88.75 Aligned_cols=214 Identities=17% Similarity=0.251 Sum_probs=121.3
Q ss_pred cccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcC--CCCCCCCCC
Q psy17537 353 LKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG--WETLDSFMQ 430 (773)
Q Consensus 353 L~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~--~~~~~~~~Q 430 (773)
-+|.-|.||+-++|-+|.|+..+++.+-..... ..++...|..-+.+.... ..........+ ........=
T Consensus 5 W~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~~~----e~s~~~~L~~~Y~qa~~l---l~~~q~~~~~~~~~~~~~~~~l 77 (275)
T PF15499_consen 5 WKNSNALCWLDCILSALVHLESLKNAVTELCSK----EESVFWRLFTKYNQANKL---LHTCQLDGVKDDDCKKVPSEIL 77 (275)
T ss_pred ecCccccHHHHHHHHHHHHHHHHHHHHhhhccc----cccHHHHHHHHHHHHHHH---HHhhhhcCCCCcccccCchHHH
Confidence 468889999999999999999999988653222 224444444333332210 00000000000 000000011
Q ss_pred CcHHHHHHHHHHHHHHHhcCC-------------------CcCCccccccceeEEEEEEeccCCceeee-----Eeecee
Q psy17537 431 HDVQEFLRVLLDKLEIKMKGT-------------------CVEGTVPKLFEGKMISFIKCKKVNYTSSR-----AETFYD 486 (773)
Q Consensus 431 qDA~Efl~~Ll~~L~~~~~~~-------------------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~-----~e~f~~ 486 (773)
.+|...|..+-+.|-..++.. ..+..+.++|.-...=...|..||+.... .-+|..
T Consensus 78 ~~ae~~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtn 157 (275)
T PF15499_consen 78 AKAETCLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTN 157 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHhheeeEEEEEccccCChhhhhheeeecccCC
Confidence 133444444444443333221 11346789999999999999999985422 112211
Q ss_pred EEeecCCCCCHHHHHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecc
Q psy17537 487 IQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYD 566 (773)
Q Consensus 487 l~l~i~~~~sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~ 566 (773)
+ +++-. .+.....--|..|+.+...+++.+.++|+|+++|+. .|-..+......|-
T Consensus 158 v---~pdwh-------------PLnA~h~~pCn~C~~ksQ~rkMvlekv~~vfmLHFV-------eGLP~ndl~~ysF~- 213 (275)
T PF15499_consen 158 V---IPDWH-------------PLNAVHFGPCNSCNSKSQRRKMVLEKVPPVFMLHFV-------EGLPHNDLQHYSFH- 213 (275)
T ss_pred C---CCCCC-------------cccccccCCCcccCChHHhHhhhhhcCchhhhhhhh-------ccCCccCCCcccee-
Confidence 1 22211 122223356899988888899999999999999963 12111111111221
Q ss_pred ccccccccccCCCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCC
Q psy17537 567 RIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNK 612 (773)
Q Consensus 567 ~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~ 612 (773)
-....|++.+||-+.-. --|+++|+++ .+|.
T Consensus 214 ------------feg~~Y~Vt~VIQY~~~--~~HFvtWi~~-~dGs 244 (275)
T PF15499_consen 214 ------------FEGCLYQVTSVIQYQAN--LNHFVTWIRD-SDGS 244 (275)
T ss_pred ------------ecCeeEEEEEEEEEecc--CceeEEEEEc-CCCC
Confidence 12367999999988754 4599999999 6888
No 78
>smart00061 MATH meprin and TRAF homology.
Probab=98.42 E-value=2.1e-07 Score=81.11 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=31.9
Q ss_pred EEEEEcCccccc--cccCCCCeEecCccEEEEEEeCC
Q psy17537 69 FSFKVENIHNLK--DTALSPPHYARNLPWKIMFMVKL 103 (773)
Q Consensus 69 ~~w~I~~fs~l~--~~~~S~~F~vgg~~W~i~~yP~g 103 (773)
++|+|+||+.+. +.+.|++|.+||+.|+|.+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~~ 38 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN 38 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEcC
Confidence 689999999885 56789999999999999999986
No 79
>KOG1866|consensus
Probab=98.32 E-value=3e-07 Score=102.55 Aligned_cols=99 Identities=35% Similarity=0.507 Sum_probs=80.4
Q ss_pred cCCCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCC----CCccHHHHHHHHHHHHHhcCC-CCcChHHHH
Q psy17537 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD----DSNKSVALALQRVFHELQFSD-KPVGTKKLT 235 (773)
Q Consensus 161 ~~~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~----~~~~~l~~~l~~l~~~l~~~~-~~~~~~~~~ 235 (773)
.++.+.|++||+|-|+|||||+++|-|+++|.+|..+..+....+ .-...+.+.+|.+|..|..+. +.+.|..+-
T Consensus 88 gsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~W 167 (944)
T KOG1866|consen 88 GSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFW 167 (944)
T ss_pred CCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHH
Confidence 578899999999999999999999999999999998876654322 122348999999999988666 578888887
Q ss_pred HHcC--CCCCCCCCCCChhhhhhhhc
Q psy17537 236 KSFG--WETLDSFMQHDVQEFLRVCN 259 (773)
Q Consensus 236 ~~l~--~~~~~~~~QqDa~E~l~~~~ 259 (773)
+.++ +......+||||-||+..+.
T Consensus 168 k~Fr~~~~pln~reqhDA~eFf~sLl 193 (944)
T KOG1866|consen 168 KQFRLWGEPLNLREQHDALEFFNSLL 193 (944)
T ss_pred HHhhccCCccchHhhhhHHHHHHHHH
Confidence 7766 34666779999999998643
No 80
>KOG1867|consensus
Probab=98.30 E-value=8.6e-07 Score=99.68 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=80.7
Q ss_pred CCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCC--CCCC-ccHHHHHHHHHHHHHhcCC-C-CcChHHHHHHc
Q psy17537 164 KHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SDDS-NKSVALALQRVFHELQFSD-K-PVGTKKLTKSF 238 (773)
Q Consensus 164 ~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~--~~~~-~~~l~~~l~~l~~~l~~~~-~-~~~~~~~~~~l 238 (773)
-..|+.||.|+|+||+||++||+|.+.+..+...+...+. +... ..++...+.++|..++++. . +++|..++..+
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~ 236 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLV 236 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHH
Confidence 4678899999999999999999999888888777665543 2233 6699999999999999887 4 57777776665
Q ss_pred C--CCCCCCCCCCChhhhhhhhcCCCCC
Q psy17537 239 G--WETLDSFMQHDVQEFLRVCNGETES 264 (773)
Q Consensus 239 ~--~~~~~~~~QqDa~E~l~~~~~e~~~ 264 (773)
. -+.+.++.|||+|||+..+.+....
T Consensus 237 ~k~~~~~~g~~Qqda~eF~~~~~~~~~~ 264 (492)
T KOG1867|consen 237 WKHSPNLAGYEQQDAHEFLIALLDRLHR 264 (492)
T ss_pred HHhCcccccccccchHHHHHHhcccccc
Confidence 4 4578889999999999877654443
No 81
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=98.24 E-value=8.3e-07 Score=84.24 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=61.8
Q ss_pred cEEEEEEcCcccccc------ccCCCCeEec-CccEEEEEEeCCcc----------------------------------
Q psy17537 67 VRFSFKVENIHNLKD------TALSPPHYAR-NLPWKIMFMVKLLV---------------------------------- 105 (773)
Q Consensus 67 ~~~~w~I~~fs~l~~------~~~S~~F~vg-g~~W~i~~yP~g~~---------------------------------- 105 (773)
..|.|+|.|||++.+ .++||+|..+ ||+-.|.+||+|..
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 358999999997652 3779999875 99999999998821
Q ss_pred --ccee--------------------eee------eec--------------cCCCcccccccCcccccCCCCCccccCc
Q psy17537 106 --RRRI--------------------QHL------FFI--------------KENDWGFSHFMTFSDLLDPDKGFIKDDS 143 (773)
Q Consensus 106 --~~~~--------------------~~~------f~~--------------~~~~wG~~~fi~~~~l~~~~~g~l~~d~ 143 (773)
.++. ... |.. ...+|||+.||+.+.|. +.+||+||+
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdDt 159 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKNDD 159 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCCe
Confidence 0010 000 221 24489999999999995 689999999
Q ss_pred EEEEEEe
Q psy17537 144 IILEVCV 150 (773)
Q Consensus 144 ~~i~~~v 150 (773)
+.|.+++
T Consensus 160 lfI~~~~ 166 (167)
T cd03783 160 LIIFVDF 166 (167)
T ss_pred EEEEEec
Confidence 9998876
No 82
>KOG1870|consensus
Probab=98.22 E-value=8.5e-07 Score=106.89 Aligned_cols=104 Identities=27% Similarity=0.308 Sum_probs=81.9
Q ss_pred CCCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCC-------CCCCCccHHHHHHHHHHHHHhcCCC-CcChHH
Q psy17537 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT-------ESDDSNKSVALALQRVFHELQFSDK-PVGTKK 233 (773)
Q Consensus 162 ~~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~-------~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~~ 233 (773)
.....|.+||.|+|||||||+.+|||.+.+.++++++.... +..+....+......+...++...+ .+.+..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 44678999999999999999999999999999999975432 2234456778888899999998887 466666
Q ss_pred HHHHcC--CCCCCCCCCCChhhhhhhhcCCCCCC
Q psy17537 234 LTKSFG--WETLDSFMQHDVQEFLRVCNGETESS 265 (773)
Q Consensus 234 ~~~~l~--~~~~~~~~QqDa~E~l~~~~~e~~~~ 265 (773)
+...++ .+.+.++.|||.+||+-++++.....
T Consensus 320 ~~~~~~~~a~~~~g~~q~d~~E~lafllDglhed 353 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQDSQELLAFLLDGLHED 353 (842)
T ss_pred hhhhhhhccccccCcccccchhhhhHHhhhhhHH
Confidence 655554 44699999999999998876655443
No 83
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=98.08 E-value=3e-06 Score=80.01 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=61.4
Q ss_pred cEEEEEEcCcccccc------ccCCCCe-EecCccEEEEEEeCCcc-------------------------c--------
Q psy17537 67 VRFSFKVENIHNLKD------TALSPPH-YARNLPWKIMFMVKLLV-------------------------R-------- 106 (773)
Q Consensus 67 ~~~~w~I~~fs~l~~------~~~S~~F-~vgg~~W~i~~yP~g~~-------------------------~-------- 106 (773)
..|.|+|.||+++.+ .++||+| +..||+-++.+||||.. .
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~L 81 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMML 81 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEE
Confidence 469999999997652 3779998 44799999999999910 0
Q ss_pred -ce---------------------ee--eee--ecc-----------------CCCcccccccCcccccCCCCCccccCc
Q psy17537 107 -RR---------------------IQ--HLF--FIK-----------------ENDWGFSHFMTFSDLLDPDKGFIKDDS 143 (773)
Q Consensus 107 -~~---------------------~~--~~f--~~~-----------------~~~wG~~~fi~~~~l~~~~~g~l~~d~ 143 (773)
++ .. ..| ... +.+||++.||+.++|. +..||+||.
T Consensus 82 lDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yikdD~ 159 (167)
T cd03782 82 LDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIKGDD 159 (167)
T ss_pred EcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCcccCCe
Confidence 00 00 023 111 5789999999999995 589999999
Q ss_pred EEEEEEe
Q psy17537 144 IILEVCV 150 (773)
Q Consensus 144 ~~i~~~v 150 (773)
+.|-+++
T Consensus 160 ifi~~~~ 166 (167)
T cd03782 160 VIFLLTM 166 (167)
T ss_pred EEEEEec
Confidence 9887765
No 84
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=98.04 E-value=3.2e-06 Score=79.52 Aligned_cols=82 Identities=62% Similarity=1.082 Sum_probs=69.0
Q ss_pred hhcCCCCCCCccccccchhhcCCCCCCCCCccccccceeeeecCCCcccccccccccCCCCCCccccCceEEEEEeecCC
Q psy17537 257 VCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADA 336 (773)
Q Consensus 257 ~~~~e~~~~~ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v~~~~ 336 (773)
.|........|++.|++.+++++|..+.....+...+.|.....+|||.+|+.+.+|.++..||+.+|++.++.++..+.
T Consensus 55 ~~~~~~~~~~w~i~a~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 55 QCNAESDSTSWSCHAQAVLRIINYKDDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred eeCCcCCCCCCeEEEEEEEEEEcCCCCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 44554455589999999999999986666666677788977778999999999999998889999999999999998776
Q ss_pred CC
Q psy17537 337 PH 338 (773)
Q Consensus 337 p~ 338 (773)
|+
T Consensus 135 ~~ 136 (137)
T cd03772 135 PH 136 (137)
T ss_pred CC
Confidence 53
No 85
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.93 E-value=2.8e-06 Score=87.38 Aligned_cols=20 Identities=65% Similarity=1.044 Sum_probs=19.5
Q ss_pred ceeeCCCceehHHHHHHHhc
Q psy17537 170 GLKNQGATCYMNSLLQTLYF 189 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~ 189 (773)
||.|.||||||||+||+|.+
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH
Confidence 89999999999999999998
No 86
>KOG1872|consensus
Probab=97.90 E-value=2.6e-06 Score=91.70 Aligned_cols=91 Identities=24% Similarity=0.346 Sum_probs=72.5
Q ss_pred ccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCC-----CCccHHHHHHHHHHHHHhcCCCCcChHHHHHHcC--C
Q psy17537 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-----DSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG--W 240 (773)
Q Consensus 168 ~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~-----~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~l~--~ 240 (773)
.+|+.|+|||||||+.+|||...++++..+........ .....++.+++.+|..|..+ .++.|..|+..+. .
T Consensus 105 p~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~~~ 183 (473)
T KOG1872|consen 105 PVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSSQY 183 (473)
T ss_pred CccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHHHh
Confidence 35999999999999999999999999988876653222 12357889999999999998 8888888887776 2
Q ss_pred C------CCCCCCCCChhhhhhhhc
Q psy17537 241 E------TLDSFMQHDVQEFLRVCN 259 (773)
Q Consensus 241 ~------~~~~~~QqDa~E~l~~~~ 259 (773)
+ ....+.|||+.|....+.
T Consensus 184 Pqfa~~~~~g~~~qqda~ec~~~~m 208 (473)
T KOG1872|consen 184 PQFAEWVEYGIYMQQDAAECWMEEP 208 (473)
T ss_pred HHHHHHhhhhhHHHHHHhHhHHHhh
Confidence 2 334578999999987654
No 87
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=97.82 E-value=2.4e-05 Score=83.73 Aligned_cols=90 Identities=24% Similarity=0.321 Sum_probs=75.3
Q ss_pred cceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHh-cCCC-CcChHHHHHHcCCC--CCC
Q psy17537 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQ-FSDK-PVGTKKLTKSFGWE--TLD 244 (773)
Q Consensus 169 ~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~-~~~~~~~~~~l~~~--~~~ 244 (773)
+||.|.+++||+||+||+|++++++|..++... ......++.+.|.-||.-|. .+.. ...+..+++++.+. ...
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a~~ 78 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEAAA 78 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHHHh
Confidence 599999999999999999999999999998877 45667899999999999998 5443 46788899999865 344
Q ss_pred CCCCCChhhhhhhhcC
Q psy17537 245 SFMQHDVQEFLRVCNG 260 (773)
Q Consensus 245 ~~~QqDa~E~l~~~~~ 260 (773)
...|+|.+++.+++..
T Consensus 79 l~~~~~iq~~~~Fll~ 94 (295)
T PF13423_consen 79 LGLQQDIQSLNRFLLE 94 (295)
T ss_pred cchhHHHHHHHHHHHH
Confidence 5569999999987654
No 88
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.79 E-value=2.1e-05 Score=82.58 Aligned_cols=58 Identities=29% Similarity=0.407 Sum_probs=48.1
Q ss_pred cCCCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHH
Q psy17537 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVF 219 (773)
Q Consensus 161 ~~~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~ 219 (773)
..-..++++||.|+|.|||+||+||+|+++|.||..+... ........++.++|..||
T Consensus 8 ~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~-~~~~~~~~~l~~el~~lf 65 (268)
T cd02672 8 EFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAII-LVACPKESCLLCELGYLF 65 (268)
T ss_pred cccccccccccccCCccchHHHHHHHHHhcHHHHHHHHhh-cccCCcCccHHHHHHHHH
Confidence 3445678999999999999999999999999999984433 233455679999999999
No 89
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=97.73 E-value=9.7e-06 Score=75.93 Aligned_cols=104 Identities=19% Similarity=0.305 Sum_probs=75.5
Q ss_pred CcChHHHHHHcCCCCCCCCCCCChhhhhhhhcCCC----CCCCccccccchhhcCCCCCCCCCccccccceeeeecCCCc
Q psy17537 228 PVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGET----ESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWG 303 (773)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~QqDa~E~l~~~~~e~----~~~~ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~~~~~d~G 303 (773)
.++..+|...+++++... .....-||.+...+. .+.+|.+.|++.+.++||..+..+..+...|+|.....+||
T Consensus 23 ~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~~~~~~~~~~~F~~~~~~wG 100 (134)
T cd03775 23 KCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPSIQLSNVAHHRFNAEDKDWG 100 (134)
T ss_pred EECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCccceEccceeEeCCCCCCCC
Confidence 355566666666554332 222344443333322 25789999999999999987766666777899988778999
Q ss_pred ccccccccccCCC----CCCccccCceEEEEEee
Q psy17537 304 FSHFMTFSDLLDP----DKGFIKDDSIILEVCVQ 333 (773)
Q Consensus 304 ~s~f~~~~dL~d~----~~g~l~ndsi~~e~~v~ 333 (773)
|..|+...+|.++ ..|++.||++.+++.++
T Consensus 101 ~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 101 FTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred hhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9999999999865 57999999999887753
No 90
>KOG4598|consensus
Probab=97.72 E-value=6.3e-06 Score=91.30 Aligned_cols=72 Identities=31% Similarity=0.487 Sum_probs=62.6
Q ss_pred CCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCCCCcChHHHHHHcCCCC
Q psy17537 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWET 242 (773)
Q Consensus 163 ~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~~ 242 (773)
..+.||+||.|..-|||+|+.+|+|+.++.|+..++.-+ ..++.+.+++++++|..
T Consensus 82 ~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~------------------------~~~~et~dlt~sfgw~s 137 (1203)
T KOG4598|consen 82 ENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE------------------------NDSLETKDLTQSFGWTS 137 (1203)
T ss_pred cCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC------------------------cccccchhhHhhcCCCc
Confidence 357899999999999999999999999999999888322 23467789999999999
Q ss_pred CCCCCCCChhhhhhhh
Q psy17537 243 LDSFMQHDVQEFLRVC 258 (773)
Q Consensus 243 ~~~~~QqDa~E~l~~~ 258 (773)
...++|||.||+-++.
T Consensus 138 ~ea~~qhdiqelcr~m 153 (1203)
T KOG4598|consen 138 NEAYDQHDVQELCRLM 153 (1203)
T ss_pred chhhhhhhHHHHHHHH
Confidence 9999999999998753
No 91
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.42 E-value=3.5e-05 Score=79.35 Aligned_cols=20 Identities=60% Similarity=1.097 Sum_probs=19.5
Q ss_pred ceeeCCCceehHHHHHHHhc
Q psy17537 170 GLKNQGATCYMNSLLQTLYF 189 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~ 189 (773)
||.|.|||||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH
Confidence 89999999999999999999
No 92
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.41 E-value=6.7e-05 Score=77.71 Aligned_cols=46 Identities=33% Similarity=0.448 Sum_probs=37.2
Q ss_pred eeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCCCCcChHHHHHHcCCCCCCCCCCCC
Q psy17537 171 LKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHD 250 (773)
Q Consensus 171 L~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~QqD 250 (773)
|.|.||+||+||.+|+|..+... .+.|.++.|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~----------------------------------------------~~~F~~~~QQD 35 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSIGKI----------------------------------------------NTEFDNDDQQD 35 (245)
T ss_pred ceecCCeeeehhHHHHHHHHhhh----------------------------------------------hhhcCCCchhh
Confidence 78999999999999999764211 34688899999
Q ss_pred hhhhhhhhcCCC
Q psy17537 251 VQEFLRVCNGET 262 (773)
Q Consensus 251 a~E~l~~~~~e~ 262 (773)
|||||+.+++..
T Consensus 36 AhEFL~~LLd~l 47 (245)
T cd02673 36 AHEFLLTLLEAI 47 (245)
T ss_pred HHHHHHHHHHHH
Confidence 999999877543
No 93
>KOG1871|consensus
Probab=97.22 E-value=0.00029 Score=74.35 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=31.5
Q ss_pred CcccceeeCCCceehHHHHHHHhccHHHHHHHhcCC
Q psy17537 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP 201 (773)
Q Consensus 166 ~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~ 201 (773)
--..|+.|-||-|||||+||+|..|++|-..+..++
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~ 61 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIK 61 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhh
Confidence 344799999999999999999999999998876655
No 94
>KOG2026|consensus
Probab=97.12 E-value=0.00056 Score=71.89 Aligned_cols=97 Identities=24% Similarity=0.207 Sum_probs=80.2
Q ss_pred CCCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCCC---CcChHHHHHHc
Q psy17537 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDK---PVGTKKLTKSF 238 (773)
Q Consensus 162 ~~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~---~~~~~~~~~~l 238 (773)
.---.|++||.|+.++-|.|++||.|.+..++|.+++.... .-+....+...+..+.+.+|+... -++|.+++.++
T Consensus 128 ~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n-~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV 206 (442)
T KOG2026|consen 128 STYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN-YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAV 206 (442)
T ss_pred CcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc-ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHH
Confidence 33568999999999999999999999999999999987532 223445678888889999998874 49999998876
Q ss_pred C---CCCCCCCCCCChhhhhhhhc
Q psy17537 239 G---WETLDSFMQHDVQEFLRVCN 259 (773)
Q Consensus 239 ~---~~~~~~~~QqDa~E~l~~~~ 259 (773)
- .+.|...+|.|..||+.-+.
T Consensus 207 ~~~s~k~f~i~~q~DpveFlswll 230 (442)
T KOG2026|consen 207 MKLSKKRFRIGQQSDPVEFLSWLL 230 (442)
T ss_pred HHHhhhheecCCCCCHHHHHHHHH
Confidence 6 66888999999999997544
No 95
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.96 E-value=0.00022 Score=72.58 Aligned_cols=20 Identities=45% Similarity=0.986 Sum_probs=18.9
Q ss_pred ceeeCCCceehHHHHHHHhc
Q psy17537 170 GLKNQGATCYMNSLLQTLYF 189 (773)
Q Consensus 170 GL~NlGnTCy~Ns~LQ~L~~ 189 (773)
||.|.||||.+|++.|.|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH
Confidence 89999999999999999986
No 96
>KOG1987|consensus
Probab=96.63 E-value=0.0033 Score=67.31 Aligned_cols=90 Identities=17% Similarity=0.314 Sum_probs=70.2
Q ss_pred EEEEEEcCccccccccCCCCeEecCccEEEEEEeCCc-c----------------------cc-----------eeeeee
Q psy17537 68 RFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLL-V----------------------RR-----------RIQHLF 113 (773)
Q Consensus 68 ~~~w~I~~fs~l~~~~~S~~F~vgg~~W~i~~yP~g~-~----------------------~~-----------~~~~~f 113 (773)
.++|.|.+|+.....++|..|.+||+.|++.+||+|+ . .+ +...+|
T Consensus 5 ~~~~~~~~~~~~~l~~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~~~~~~~~~~ 84 (297)
T KOG1987|consen 5 KFTWVISNFSSVGLVIYSNGFVKGGCKWRLSAYPKGNYLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLSTVEEGFSWF 84 (297)
T ss_pred ccceeeccCcchhhhccccceeecCceEEEEEecCCCEEEEEEEeccCCCcceeEEEEEEEccCCCcceeeeeeeeEEec
Confidence 3559999999988888999999999999999999984 1 00 112222
Q ss_pred ec--cCCCcccccccCcccccCCCCCccccCcEEEEEEeecCCCCc
Q psy17537 114 FI--KENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHG 157 (773)
Q Consensus 114 ~~--~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~~~~ 157 (773)
.. ....||+.+++++..+.+...||+.+..+.+-+.+.|.++.+
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~ 130 (297)
T KOG1987|consen 85 RFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG 130 (297)
T ss_pred cccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence 22 267899999999999999999999997777777766655444
No 97
>KOG1864|consensus
Probab=96.05 E-value=0.0065 Score=70.03 Aligned_cols=98 Identities=23% Similarity=0.307 Sum_probs=57.8
Q ss_pred cccCccccchhhHHHHHhccHHHHHHHHcCCCCC----------CCCchHHHHHHHHH------HHHhhcCCCC--CChh
Q psy17537 353 LKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES----------DDSNKSVALALQRV------FHELQFSDKP--VGTK 414 (773)
Q Consensus 353 L~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~----------~~~~~~l~~~L~~l------f~~l~~~~~~--~~~~ 414 (773)
|+|.||+||.||+||+|+.+|+|+..+...+... ........+..+.+ +......... .+..
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999998775532111 01111111111111 1111011111 1112
Q ss_pred hhhhhcC-----CCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q psy17537 415 KLTKSFG-----WETLDSFMQHDVQEFLRVLLDKLEIKMKG 450 (773)
Q Consensus 415 ~l~~~l~-----~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~ 450 (773)
.+...+. ...+....|+||++++.-++-.+...+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 2222211 34577889999999999999998877654
No 98
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=95.41 E-value=0.0041 Score=56.38 Aligned_cols=64 Identities=39% Similarity=0.665 Sum_probs=51.7
Q ss_pred CCccccccchhhcCCCCCCCCCcccccc-ceeeeecCCCcccccccccccCCCCCCccccCceEEEEEee
Q psy17537 265 SAWSCYASAELILVPQKPGVEPFSRRIQ-HLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 333 (773)
Q Consensus 265 ~~ws~~~~~~L~l~nq~~~~~~~~~~i~-~~F~~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v~ 333 (773)
..|++.+++.+.++++..+. ..+... +.|... .+|||.+|+.+.+|.++. |+.+|++.+++++.
T Consensus 54 ~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~ 118 (119)
T PF00917_consen 54 LEWSIEAEFRFRLLNQNGKS--ISKRIKSHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVK 118 (119)
T ss_dssp SSSSEEEEEEEEEE-TTSCE--EEEEEECEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEE
T ss_pred cceeeeEEEEEEEecCCCCc--ceeeeeeeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEE
Confidence 59999999999999988765 334444 677544 789999999999998876 99999999998764
No 99
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=95.30 E-value=0.011 Score=53.71 Aligned_cols=66 Identities=38% Similarity=0.639 Sum_probs=53.0
Q ss_pred CCCccccccchhhcCCCCCCCCCccccccceee-eecCCCcccccccccccCCCCCCccccCceEEEEEe
Q psy17537 264 SSAWSCYASAELILVPQKPGVEPFSRRIQHLFF-IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 332 (773)
Q Consensus 264 ~~~ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~-~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v 332 (773)
...|++.+.+.+.++++.+ .+...+...+.|. ....+|||..|+.+.+|.++.. +.+|++.++.++
T Consensus 59 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~--~~~d~l~i~~~v 125 (126)
T cd00121 59 LEKWSVRAEFTLKLVNQNG-GKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYY--LVDDSLTIEVEV 125 (126)
T ss_pred CCCCcEEEEEEEEEECCCC-CccceEeccCCcCCCCCCCCChHHeeEHHHhccCCc--EECCEEEEEEEE
Confidence 4679999999999999983 4556666666664 5678999999999999987533 889999888765
No 100
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=95.08 E-value=0.0065 Score=57.14 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=62.8
Q ss_pred HHHHHcCCCCCCCCCCCChhhhhhhhcCCCCCCCccccccchhhcCCCCCCCCCccc-cccceeeeecCCCccccccccc
Q psy17537 233 KLTKSFGWETLDSFMQHDVQEFLRVCNGETESSAWSCYASAELILVPQKPGVEPFSR-RIQHLFFIKENDWGFSHFMTFS 311 (773)
Q Consensus 233 ~~~~~l~~~~~~~~~QqDa~E~l~~~~~e~~~~~ws~~~~~~L~l~nq~~~~~~~~~-~i~~~F~~~~~d~G~s~f~~~~ 311 (773)
.|...+++++........+.-||.+.. ...+.+.|++.+.++|+......... ...+.|.. ..+|||.+|+...
T Consensus 39 ~W~l~~yP~G~~~~~~~~iSlyL~l~~----~~~~~v~a~f~~~l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~ 113 (139)
T cd03774 39 KWCLRVNPKGLDEESKDYLSLYLLLVS----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRD 113 (139)
T ss_pred eEEEEEeCCCCCCCCCCeEEEEEEEcc----CCCCcEEEEEEEEEEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHH
Confidence 455566655443222222333433221 12457889999999999865332222 23466754 5789999999999
Q ss_pred ccCCCCCCccccCceEEEEEee
Q psy17537 312 DLLDPDKGFIKDDSIILEVCVQ 333 (773)
Q Consensus 312 dL~d~~~g~l~ndsi~~e~~v~ 333 (773)
+|.++..|++.||++.++..+.
T Consensus 114 ~L~~~~~g~l~dD~l~I~c~I~ 135 (139)
T cd03774 114 FLLDEANGLLPDDKLTLFCEVS 135 (139)
T ss_pred HhhhhhcccccCCEEEEEEEEE
Confidence 9998888999999998887765
No 101
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=94.75 E-value=0.017 Score=53.77 Aligned_cols=65 Identities=20% Similarity=0.413 Sum_probs=51.0
Q ss_pred CccccccchhhcCCCCCCCCCccccccceeeeecCCCcccccccccccCCCCCCcccc--CceEEEEEee
Q psy17537 266 AWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKD--DSIILEVCVQ 333 (773)
Q Consensus 266 ~ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~~~~~d~G~s~f~~~~dL~d~~~g~l~n--dsi~~e~~v~ 333 (773)
.|...+++.+.++||..+..+......+.|.. ..+|||.+|+...+|.+ .|||.+ |++.++..++
T Consensus 64 ~~~~~~~~~l~llnq~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 64 GEASKYEYRVEMVHQANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCceeEEEEEEEEcCCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 35666788899999865556666677788865 46799999999988864 699998 9998887765
No 102
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=92.60 E-value=0.098 Score=49.70 Aligned_cols=66 Identities=21% Similarity=0.458 Sum_probs=47.7
Q ss_pred CCccccccchhhcCCCCCC--CCCccccc-----cceee-----eecCCCcccccccccccCCCCCCccccCceEEEEEe
Q psy17537 265 SAWSCYASAELILVPQKPG--VEPFSRRI-----QHLFF-----IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 332 (773)
Q Consensus 265 ~~ws~~~~~~L~l~nq~~~--~~~~~~~i-----~~~F~-----~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v 332 (773)
..|.+.+++.+.+++|..+ ..+....+ .+.|. ....+|||.+|+...+|.++ ||+.||++.++..+
T Consensus 71 ~~w~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~--gfl~dD~l~I~~~v 148 (149)
T cd00270 71 LEWPFRGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESR--GYVKDDTLFIKVEV 148 (149)
T ss_pred ccCCccceEEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccC--CCEeCCEEEEEEEE
Confidence 4699999999999998863 22222111 22343 14568999999999998654 89999999888654
No 103
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=92.11 E-value=0.11 Score=49.87 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=59.7
Q ss_pred hhhhhhhhcCCCCC-CCccccccchhhcCCCCCCCCCcccccc--------cee-eeecCCCcccccccccccCCCCCCc
Q psy17537 251 VQEFLRVCNGETES-SAWSCYASAELILVPQKPGVEPFSRRIQ--------HLF-FIKENDWGFSHFMTFSDLLDPDKGF 320 (773)
Q Consensus 251 a~E~l~~~~~e~~~-~~ws~~~~~~L~l~nq~~~~~~~~~~i~--------~~F-~~~~~d~G~s~f~~~~dL~d~~~g~ 320 (773)
...|+.+..++..+ -.|-+..++.+.+++|.. ..++...+. ++. ...+..||+..|+++.+|..+ .+|
T Consensus 74 LSly~~l~~Ge~D~~L~WPf~~~itl~llDQ~~-r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Y 151 (164)
T cd03778 74 LSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNN-REHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSY 151 (164)
T ss_pred EEEEEEEecCCcCcccCCceeeEEEEEEECCCC-CCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCc
Confidence 45677667777776 789999999999999974 345544432 223 334557999999999888764 599
Q ss_pred cccCceEEEEEe
Q psy17537 321 IKDDSIILEVCV 332 (773)
Q Consensus 321 l~ndsi~~e~~v 332 (773)
+.||++.+++.+
T Consensus 152 v~dDtlfIk~~V 163 (164)
T cd03778 152 VRDDAIFIKAIV 163 (164)
T ss_pred ccCCeEEEEEEE
Confidence 999999888754
No 104
>KOG3556|consensus
Probab=90.93 E-value=0.12 Score=56.68 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=47.3
Q ss_pred cccccccCccccchhhHHHHHhccHHHHHHHHc-CCCCCCCCchHHHHHHHHHHHHh-----hcC-----CCCCChhhhh
Q psy17537 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYK-MPTESDDSNKSVALALQRVFHEL-----QFS-----DKPVGTKKLT 417 (773)
Q Consensus 349 g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~-~~~~~~~~~~~l~~~L~~lf~~l-----~~~-----~~~~~~~~l~ 417 (773)
.+.|+.-.-|.||+||.|-+++.-......++- -+...+ ..-.-++|.+++.- +.. ........++
T Consensus 367 k~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~d---~~nYse~q~~LRseiVnplr~n~fVr~~~~mklR~~l 443 (724)
T KOG3556|consen 367 KIKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPSD---SMNYSEMQHSLRSEIVNPLRRNQFVRQNPAMKLRVEL 443 (724)
T ss_pred ccccccCCcchhhccccccccccccccccccccCCCCccc---ccccHHHHHHHHHhhhchhhhcceeecCHHHHHHHHH
Confidence 356777788999999999888765554443332 121111 12223344333211 100 0011112223
Q ss_pred hhcCCCCCCCCCCCcHHHHHHHHHHHH
Q psy17537 418 KSFGWETLDSFMQHDVQEFLRVLLDKL 444 (773)
Q Consensus 418 ~~l~~~~~~~~~QqDA~Efl~~Ll~~L 444 (773)
..+....-...+..|+.|||.-++..+
T Consensus 444 dql~~~sG~tceekdpEEFLn~l~t~i 470 (724)
T KOG3556|consen 444 DQLNFRSGDTCEEKDPEEFLNGLKTLI 470 (724)
T ss_pred HhhhccccCcccccCHHHHHHHHHHHh
Confidence 333323333445678999888887776
No 105
>KOG1887|consensus
Probab=90.74 E-value=0.059 Score=62.66 Aligned_cols=203 Identities=18% Similarity=0.259 Sum_probs=120.6
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCC--------------------cCCccccccceeEEEEEEeccCCceeeeEe-eceeEE
Q psy17537 430 QHDVQEFLRVLLDKLEIKMKGTC--------------------VEGTVPKLFEGKMISFIKCKKVNYTSSRAE-TFYDIQ 488 (773)
Q Consensus 430 QqDA~Efl~~Ll~~L~~~~~~~~--------------------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e-~f~~l~ 488 (773)
..++.++|..++..|++...... -.+++.++|+-.......|..|...+...+ .-+.+.
T Consensus 549 ~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~ 628 (806)
T KOG1887|consen 549 EGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIV 628 (806)
T ss_pred hhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhh
Confidence 34677888888888877665321 124677899888888899999987654332 111222
Q ss_pred eecCC---------CCCHHHHHHhcCCceeecCCCcccCC----CCCceeeeeeeEeccCCceeEEEeeceEecCCCCcc
Q psy17537 489 LNVKG---------KKDILESFKDYIEPEVLEGDNKYDAG----VHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCS 555 (773)
Q Consensus 489 l~i~~---------~~sl~~~L~~~~~~E~l~~~n~~~C~----~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~ 555 (773)
+.... ..++++.|+. +..+ .+-.|+ .|++.. .-...|.++|+|.+|.|. |. +...
T Consensus 629 ~~a~slr~~k~a~~n~~f~~ilk~-i~m~-----~~m~cD~~~gGCgk~n-~v~h~is~~P~vftIvle---wE--k~ET 696 (806)
T KOG1887|consen 629 IAADSLRQLKCAFQNITFEDILKN-IRMN-----DKMLCDKETGGCGKAN-LVHHILSPCPPVFTIVLE---WE--KSET 696 (806)
T ss_pred ccchhhhhHHHHhhhhhHHHHHHH-hhhh-----hhhcccccCCCCcchh-hhhhhcCCCCCeeEeeee---hh--cccc
Confidence 22222 2344444443 2211 123343 265432 233467789999999653 21 1111
Q ss_pred eecC--ceeeeccccccccccccCCCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccc
Q psy17537 556 VKFN--DRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYE 633 (773)
Q Consensus 556 ~K~~--~~v~fP~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~ 633 (773)
.|.. +...+..++|++.....+......|+|+++|.-... .++|.|+... ++.
T Consensus 697 e~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~--~~~~~C~Aye--~Nr--------------------- 751 (806)
T KOG1887|consen 697 EKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE--GEEYICFAYE--PNR--------------------- 751 (806)
T ss_pred hHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc--cceEEEeecc--CCc---------------------
Confidence 2111 122344567776655433355678999999986543 6799999987 444
Q ss_pred cccccccccccccccccccCCCCCcEE--EEeCccceec-CHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEe
Q psy17537 634 PRRKQISYLGHAYLHMTESIGEYHPWC--KFDDDVVSKC-SKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRE 705 (773)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~W~--~fnD~~V~~v-~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~ 705 (773)
|. +.+|..+..+ +|.+|+..+ |. ..-.+=+|||++.
T Consensus 752 -------------------------wvs~r~~~~~~e~iG~w~dvvr~c-~e----------~~vrpeil~ye~~ 790 (806)
T KOG1887|consen 752 -------------------------WVSLRHEDSQGEVVGDWKDVVRFC-GE----------RKVRPEILFYEAQ 790 (806)
T ss_pred -------------------------chhhHHHHHHhhhccchHHHHHHH-hc----------ccccHHHHHHHHH
Confidence 55 9999888777 577777654 11 1233667888664
No 106
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=87.64 E-value=0.24 Score=47.48 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=15.8
Q ss_pred ccccccccCccccchhhHHHHHh
Q psy17537 348 TGYVGLKNQGATCYMNSLLQTLY 370 (773)
Q Consensus 348 ~g~~GL~N~GntCY~NSvLQ~L~ 370 (773)
..+.|+.|.+|+||+||++|.+.
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~ 53 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFR 53 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHH
Confidence 34569999999999999999873
No 107
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=86.91 E-value=0.38 Score=45.61 Aligned_cols=66 Identities=23% Similarity=0.478 Sum_probs=47.3
Q ss_pred CCccccccchhhcCCCCCCCCCccc-----cccceeee-----ecCCCcccccccccccCCCCCCccccCceEEEEEe
Q psy17537 265 SAWSCYASAELILVPQKPGVEPFSR-----RIQHLFFI-----KENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 332 (773)
Q Consensus 265 ~~ws~~~~~~L~l~nq~~~~~~~~~-----~i~~~F~~-----~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v 332 (773)
-.|.+.+++.+.+++|..+..++.. ...+.|.. ...+||+.+|+...+|.. .+++.||++.++..+
T Consensus 71 l~wpv~a~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V 146 (147)
T cd03776 71 LDWPFQGTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEV 146 (147)
T ss_pred cCCcccceeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEE
Confidence 4699999999999999754333221 11234542 335799999999888854 379999999888654
No 108
>KOG1275|consensus
Probab=83.91 E-value=1.5 Score=51.75 Aligned_cols=74 Identities=24% Similarity=0.397 Sum_probs=61.3
Q ss_pred CCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCC-CCcChHHHHHHcC
Q psy17537 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSD-KPVGTKKLTKSFG 239 (773)
Q Consensus 163 ~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~~~~~~~~l~ 239 (773)
-..+-|+||.--+-.-|.|++||.|++++++|..++.. .+....++.+.|.-||..|..+. ++-....|++++.
T Consensus 494 ~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H---~C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~ 568 (1118)
T KOG1275|consen 494 YNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH---ICTKEFCLLCELGFLFTMLDSSTGDPCQANNFLRAFR 568 (1118)
T ss_pred cccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC---ccchhHHHHHHHHHHHHHHhhhcCCccchhHHHHHHh
Confidence 35677889888888899999999999999999999987 34556799999999999987655 4566777777775
No 109
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=82.34 E-value=0.99 Score=42.83 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=48.5
Q ss_pred CccccccchhhcCCCCCCCCCcccc-----ccceeeee----cCCCcccccccccccCCCCCCccccCceEEEEEe
Q psy17537 266 AWSCYASAELILVPQKPGVEPFSRR-----IQHLFFIK----ENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 332 (773)
Q Consensus 266 ~ws~~~~~~L~l~nq~~~~~~~~~~-----i~~~F~~~----~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v 332 (773)
.|-+.+++.+.+++|.....++... ..+.|... +..||+.+|+..++|..+..+++.||++.+.+.+
T Consensus 72 ~wp~~~~~tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 72 QWPFRQRVTLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred CcceEEEEEEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 5889999999999986433321111 12456444 4579999999998886666899999999888754
No 110
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=82.26 E-value=1.1 Score=42.56 Aligned_cols=66 Identities=23% Similarity=0.372 Sum_probs=47.6
Q ss_pred CccccccchhhcCCCCCCCCCccc--cc---cceee----eecCCCcccccccccccCCCCCCccccCceEEEEEe
Q psy17537 266 AWSCYASAELILVPQKPGVEPFSR--RI---QHLFF----IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 332 (773)
Q Consensus 266 ~ws~~~~~~L~l~nq~~~~~~~~~--~i---~~~F~----~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v 332 (773)
.|-+.+++.+.+++|... ..... .. .+.|. ..+..||+.+|+..++|..+..+++.||++.+...+
T Consensus 72 ~wpv~~~~tfsLlDq~~~-~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 72 PWPFRHKVTFMLLDQNNR-EHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred CcceEEEEEEEEECCCCC-CCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 688999999999998532 22111 11 24575 344579999999998886555799999999887654
No 111
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=81.99 E-value=1.2 Score=42.49 Aligned_cols=80 Identities=25% Similarity=0.449 Sum_probs=49.8
Q ss_pred hhhhhhhhcCCCCC-CCccccccchhhcCCCCCCCCCccccc---------cceee--------eecCCCcccccccccc
Q psy17537 251 VQEFLRVCNGETES-SAWSCYASAELILVPQKPGVEPFSRRI---------QHLFF--------IKENDWGFSHFMTFSD 312 (773)
Q Consensus 251 a~E~l~~~~~e~~~-~~ws~~~~~~L~l~nq~~~~~~~~~~i---------~~~F~--------~~~~d~G~s~f~~~~d 312 (773)
+.-||.+...+..+ -.|.+.+++.+.+++|..........+ ...|. ..+..||+..|+..++
T Consensus 56 vs~~l~l~~ge~d~~l~wp~~a~~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~ 135 (154)
T cd03781 56 LSVYIRVLPGEYDNLLEWPFSHRITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHED 135 (154)
T ss_pred EEEEEEEecCCcccccCCceeeEEEEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHH
Confidence 34444433323332 378899999999999864311111111 12232 1334699999999988
Q ss_pred cCCCCCCccccCceEEEEEe
Q psy17537 313 LLDPDKGFIKDDSIILEVCV 332 (773)
Q Consensus 313 L~d~~~g~l~ndsi~~e~~v 332 (773)
|.. .+++.||++.++..+
T Consensus 136 Le~--~~yl~dD~l~Irc~v 153 (154)
T cd03781 136 LKK--RNYIKDDAIFLRASV 153 (154)
T ss_pred Hhh--CCcccCCEEEEEEEe
Confidence 854 579999999888654
No 112
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=80.39 E-value=1.1 Score=46.30 Aligned_cols=20 Identities=30% Similarity=0.801 Sum_probs=17.3
Q ss_pred ceeeCCC-ceehHHHHHHHhc
Q psy17537 170 GLKNQGA-TCYMNSLLQTLYF 189 (773)
Q Consensus 170 GL~NlGn-TCy~Ns~LQ~L~~ 189 (773)
|..|.+| ||||-|+|-++|.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~ 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH
Confidence 7789999 9999999877665
No 113
>smart00061 MATH meprin and TRAF homology.
Probab=79.11 E-value=0.71 Score=39.44 Aligned_cols=43 Identities=37% Similarity=0.609 Sum_probs=33.0
Q ss_pred CCCCccccccchhhcCCCCCCCCCccccccceeeeecCCCcccccc
Q psy17537 263 ESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFM 308 (773)
Q Consensus 263 ~~~~ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~~~~~d~G~s~f~ 308 (773)
.+..|++.+++.+.++++..+.. .+...+.|.. ..+||+.+|+
T Consensus 53 ~~~~w~v~a~~~~~l~~~~~~~~--~~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 53 DSRKWSIEAEFTLKLVSQNGKSL--SKKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCCCeEEEEEEEEEEEeCCCCEE--eeeeeEEEcC-CCccceeeEC
Confidence 34489999999999999985422 4556788876 6789998774
No 114
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=71.44 E-value=3.1 Score=41.07 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=46.3
Q ss_pred CccccccchhhcCCCCCCCCCccccc-----cceee-ee---cCCCcccccccccccCCCCCCccccCceEEEEEee
Q psy17537 266 AWSCYASAELILVPQKPGVEPFSRRI-----QHLFF-IK---ENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 333 (773)
Q Consensus 266 ~ws~~~~~~L~l~nq~~~~~~~~~~i-----~~~F~-~~---~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v~ 333 (773)
.|-+.+++.+.+++|.....++...+ ...|. +. +..||+++|+...+|.. .+|++||++.+.+.+.
T Consensus 110 ~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 110 PWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 184 (186)
T ss_pred CCceeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence 58889999999999864212221111 23465 33 45799999999888744 6899999999887765
No 115
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=70.06 E-value=5.8 Score=42.48 Aligned_cols=106 Identities=15% Similarity=0.239 Sum_probs=53.4
Q ss_pred ccCCcccccccccccCccccchhhHHHHHhccHH-HHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhh
Q psy17537 341 SWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQ-LRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKS 419 (773)
Q Consensus 341 ~~~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~-fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~ 419 (773)
.|.-....|++=|+-.-|+||+||++=+|-++.. |+ .-.++.+|..+..+ .+...-.++-+
T Consensus 93 kw~~~~~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~-----------------~~~l~~aw~~f~~G-~~~~fVa~~Ya 154 (320)
T PF08715_consen 93 KWPVVVVNGFRVLKQSDNNCWVNAACLQLQALKIKFK-----------------SPGLDEAWNEFKAG-DPAPFVAWCYA 154 (320)
T ss_dssp TS-EEEETTEEEE---TTTHHHHHHHHHHTTST--BS-----------------SHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred cceEEEECCEEEEEecCCCcHHHHHHHHHHhcCCccC-----------------CHHHHHHHHHHhCC-ChHHHHHHHHH
Confidence 4555555677778888899999999766633321 11 12344455444333 22222223323
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceee
Q psy17537 420 FGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSS 479 (773)
Q Consensus 420 l~~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~ 479 (773)
. .....|+--||+++|..|+..++.. ....+.....|-.||....
T Consensus 155 ~--~~~~~G~~gDa~~~L~~ll~~~~~~-------------~~~~~~~~~~~c~CG~k~~ 199 (320)
T PF08715_consen 155 S--TNAKKGDPGDAEYVLSKLLKDADLD-------------YSVTMTKLEVCCGCGVKQE 199 (320)
T ss_dssp H--TT--TTS---HHHHHHHHHTTB-TT-------------T-EEEEEEEEECTTEEEEE
T ss_pred H--cCCCCCCCcCHHHHHHHHHHhcccc-------------ceEEEEEeeeeccCCccee
Confidence 2 2355678889999999998866421 2233344467888976543
No 116
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=69.84 E-value=2.2 Score=41.02 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=21.2
Q ss_pred CCCcccceeeCCCceehHHHHHHHh-ccHHHHHHHhc
Q psy17537 164 KHTGYVGLKNQGATCYMNSLLQTLY-FTNQLRKAVYK 199 (773)
Q Consensus 164 ~~~g~~GL~NlGnTCy~Ns~LQ~L~-~~~~fr~~~~~ 199 (773)
..-.++|+.|.+|+|.+|+++|.+- .-.+|.+.+|.
T Consensus 29 ~~~eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y~ 65 (193)
T PF05408_consen 29 GKMEFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYYD 65 (193)
T ss_dssp ---EEE----SSSTHHHHHHHHHHHHHT-GTTHHHHT
T ss_pred cceEEecCCCCCCChHHHHHHHHHHHcCcccchhhcC
Confidence 4456779999999999999999873 33445555654
No 117
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=53.16 E-value=11 Score=36.56 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=26.2
Q ss_pred cCCCcccccccccccCCCCCCccccCceEEEEEe
Q psy17537 299 ENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 332 (773)
Q Consensus 299 ~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v 332 (773)
..+|||..|++..+|.. .+|+++|++.+.+.+
T Consensus 135 ~~g~G~~~Fis~~~L~~--r~ylk~dtl~i~~~~ 166 (167)
T cd03771 135 GPGYGWSTFISHSRLRR--RDFLKGDDLIILLDF 166 (167)
T ss_pred cCccccccceeHHHhcc--CCCCcCCEEEEEEEe
Confidence 34799999999988876 559999998887654
No 118
>KOG1987|consensus
Probab=42.36 E-value=2.5 Score=45.03 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=48.6
Q ss_pred ccCccccCCccccccccCCCCCCCC---CCcc--------cccccc----cEEEEEEcCcccccc-----ccCCCCeEec
Q psy17537 32 KSHNFMFGNQEENATATNQDVEMND---ADDE--------DRARSE----VRFSFKVENIHNLKD-----TALSPPHYAR 91 (773)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~----~~~~w~I~~fs~l~~-----~~~S~~F~vg 91 (773)
+.-||++.+.....++.. ..+++- .... +..... ..|+|.+.+++..+. ..++..|.+|
T Consensus 107 ~~~g~~~~~~~~~~a~~~-V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 107 CSNGFLVAHKLVLVARSE-VFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred ccCcEEEcCceEEEeeec-ceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccc
Confidence 334776665544444433 333332 1111 334445 899999999998873 4558999999
Q ss_pred CccEEEEEEeCCc
Q psy17537 92 NLPWKIMFMVKLL 104 (773)
Q Consensus 92 g~~W~i~~yP~g~ 104 (773)
+..||+.++|+|.
T Consensus 186 ~~~lk~~~~~~l~ 198 (297)
T KOG1987|consen 186 NRHLKLACMPVLL 198 (297)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999983
No 119
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=34.93 E-value=31 Score=27.27 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=23.7
Q ss_pred CcccCCCCCceeeee-eeEe--ccCCceeEEEeeceE
Q psy17537 514 NKYDAGVHGLQDAEK-GVTF--ENLPPVLHLHLMRFQ 547 (773)
Q Consensus 514 n~~~C~~c~~~~a~k-~~~i--~~lP~vL~i~L~Rf~ 547 (773)
+.+.|++|+.+.... .+.. ..+.+++-||.++|-
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 346799997665433 2222 368899999999987
No 120
>PF14353 CpXC: CpXC protein
Probab=28.77 E-value=41 Score=30.88 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=25.4
Q ss_pred EEeccCCceeeeEeeceeEEeecCCCCCHHHHHHhcCCceeecCCCcccCCCCCce
Q psy17537 469 IKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQ 524 (773)
Q Consensus 469 ~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~E~l~~~n~~~C~~c~~~ 524 (773)
++|+.|++.... +.+ -.++......+.+.|- ..+. +.+.|+.||..
T Consensus 2 itCP~C~~~~~~-~v~--~~I~~~~~p~l~e~il---~g~l----~~~~CP~Cg~~ 47 (128)
T PF14353_consen 2 ITCPHCGHEFEF-EVW--TSINADEDPELKEKIL---DGSL----FSFTCPSCGHK 47 (128)
T ss_pred cCCCCCCCeeEE-EEE--eEEcCcCCHHHHHHHH---cCCc----CEEECCCCCCc
Confidence 689999876432 222 2333333344555442 2222 34899999753
No 121
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=23.19 E-value=3.3e+02 Score=25.42 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=47.1
Q ss_pred ccCCceeEEEeeceEecCC---CCcceecCceeeeccccccccccccCCCCCcceEEeEEEEeeccCCCCcEEEEe
Q psy17537 533 ENLPPVLHLHLMRFQYDPV---TDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYI 605 (773)
Q Consensus 533 ~~lP~vL~i~L~Rf~~d~~---~~~~~K~~~~v~fP~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~v 605 (773)
..--..+.+-++||.|... .....+...-+.|...+.+..---+........+|-||-.+-|..-+||-.-..
T Consensus 31 ~~~~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~~V~~Vks~gi~~~~~d~vLsLLai~fe~~e~p~G~v~L~f 106 (138)
T PF11164_consen 31 LPKERRFALLLNRFRWEDAERRGRPPERVRSALRFDRVLAVKSRGIDRKDPDAVLSLLAITFEPGEAPAGHVLLTF 106 (138)
T ss_pred cccCCEEEEEeeeeEeccCccCCCCCcEEEEEEEEccEeeeeecCCCCCCCCceEEEEEEEEEeCCCCCcEEEEEE
Confidence 3344568899999999865 223345555566665555443222222456789999999999887778755433
No 122
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=22.48 E-value=1.7e+02 Score=29.11 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=29.1
Q ss_pred EEeccCCceeeeEeeceeEEee-cCCCCCHHHHHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEE
Q psy17537 469 IKCKKVNYTSSRAETFYDIQLN-VKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHL 541 (773)
Q Consensus 469 ~~C~~C~~~s~~~e~f~~l~l~-i~~~~sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i 541 (773)
+.|+.|+...... .+... || ||..=++. .+.|+.||++...-+..=..-|.-+.+
T Consensus 1 ~~Cp~C~~~~~~~----~~~~~~IP-----------~F~evii~---sf~C~~CGyr~~ev~~~g~~~p~r~~l 56 (192)
T TIGR00310 1 IDCPSCGGECETV----MKTVNDIP-----------YFGEVLET---STICEHCGYRSNDVKTLGAKEPKRYIL 56 (192)
T ss_pred CcCCCCCCCCEEE----EEEEcCCC-----------CcceEEEE---EEECCCCCCccceeEECCCCCCEEEEE
Confidence 3699998653221 22233 44 34444444 389999987655444333334543333
No 123
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=21.38 E-value=2.3e+02 Score=27.31 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=30.9
Q ss_pred EEeccCCceeeeEeeceeEEeecCCCCCHHHHHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCc--eeEEEe
Q psy17537 469 IKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPP--VLHLHL 543 (773)
Q Consensus 469 ~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~--vL~i~L 543 (773)
..|+.|+...... .+...|| ||..-++. .+.|+.||++...-+..=..-|. .+.+++
T Consensus 2 s~Cp~C~~~~~~~----~~~~~IP-----------~F~evii~---sf~C~~CGyk~~ev~~~~~~~~~G~r~tl~V 60 (161)
T PF03367_consen 2 SLCPNCGENGTTR----ILLTDIP-----------YFKEVIIM---SFECEHCGYKNNEVKSGGQIQPKGVRITLKV 60 (161)
T ss_dssp EE-TTTSSCCEEE----EEEEEET-----------TTEEEEEE---EEE-TTT--EEEEEEEECSS-SSEEEEEEEE
T ss_pred CcCCCCCCCcEEE----EEEEcCC-----------CCceEEEE---EeECCCCCCEeeeEEECccCCCCceEEEEEE
Confidence 5799999765432 2444555 34434444 38999999876655555455566 566654
Done!