Query psy17537
Match_columns 773
No_of_seqs 578 out of 3213
Neff 8.4
Searched_HMMs 29240
Date Sat Aug 17 01:04:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1z_A Ubiquitin carboxyl-term 100.0 3.6E-85 1.2E-89 752.4 38.1 425 262-734 87-512 (522)
2 1nb8_A Ubiquitin carboxyl-term 100.0 6.5E-66 2.2E-70 563.9 28.8 341 345-733 1-342 (353)
3 2y6e_A Ubiquitin carboxyl-term 100.0 7E-58 2.4E-62 503.7 30.1 297 346-707 4-360 (367)
4 3nhe_A Ubiquitin carboxyl-term 100.0 3.6E-57 1.2E-61 494.4 27.1 300 343-708 2-345 (348)
5 2gfo_A Ubiquitin carboxyl-term 100.0 1.6E-56 5.4E-61 496.8 29.1 296 346-706 58-396 (396)
6 3i3t_A Ubiquitin carboxyl-term 100.0 2.5E-56 8.7E-61 489.0 25.6 292 348-707 1-352 (355)
7 2ayn_A Ubiquitin carboxyl-term 100.0 6.7E-56 2.3E-60 494.5 24.9 299 347-707 11-395 (404)
8 1vjv_A Ubiquitin carboxyl-term 100.0 6.4E-55 2.2E-59 488.0 25.4 295 346-706 20-414 (415)
9 3mhs_A Ubiquitin carboxyl-term 100.0 7.9E-53 2.7E-57 479.3 26.6 296 345-706 136-474 (476)
10 3ihp_A Ubiquitin carboxyl-term 100.0 1E-49 3.5E-54 476.4 26.6 224 345-575 339-623 (854)
11 2f1z_A Ubiquitin carboxyl-term 99.9 1.4E-26 4.9E-31 265.5 11.9 204 58-261 22-268 (522)
12 2vhf_A Ubiquitin carboxyl-term 99.9 2.8E-26 9.6E-31 240.9 9.4 175 349-575 8-200 (374)
13 2foj_A Ubiquitin carboxyl-term 99.8 1.1E-20 3.8E-25 180.8 8.4 105 56-160 8-155 (155)
14 1nb8_A Ubiquitin carboxyl-term 99.7 3.7E-17 1.3E-21 178.0 9.3 99 163-261 1-99 (353)
15 3ivv_A Speckle-type POZ protei 99.7 1.7E-17 5.9E-22 156.7 5.5 89 65-154 9-144 (145)
16 4gjh_A TNF receptor-associated 99.6 1.3E-16 4.3E-21 155.9 4.6 92 64-155 21-175 (178)
17 2y6e_A Ubiquitin carboxyl-term 99.6 2.2E-15 7.6E-20 164.9 8.1 99 163-261 3-111 (367)
18 3nhe_A Ubiquitin carboxyl-term 99.6 1.9E-15 6.5E-20 164.0 6.1 100 161-260 2-110 (348)
19 3i3t_A Ubiquitin carboxyl-term 99.5 3.4E-15 1.2E-19 162.5 6.7 96 166-261 1-104 (355)
20 4ghu_A TNF receptor-associated 99.5 1.6E-15 5.6E-20 150.0 3.4 89 65-155 38-189 (198)
21 1ca9_A TRAF2, protein (TNF rec 99.5 2.4E-15 8.2E-20 148.8 3.9 90 64-154 40-191 (192)
22 1lb6_A TNF receptor-associated 99.5 6.5E-15 2.2E-19 141.3 5.9 87 65-153 3-156 (160)
23 1vjv_A Ubiquitin carboxyl-term 99.5 6.1E-15 2.1E-19 164.2 6.4 100 162-261 18-136 (415)
24 2ayn_A Ubiquitin carboxyl-term 99.5 5.5E-15 1.9E-19 163.9 5.3 97 165-261 11-120 (404)
25 2gkw_A TNF receptor-associated 99.5 3.2E-15 1.1E-19 147.6 2.8 88 65-154 38-188 (192)
26 1d00_A Tumor necrosis factor r 99.5 6.4E-15 2.2E-19 142.6 4.3 88 65-153 17-166 (168)
27 2gfo_A Ubiquitin carboxyl-term 99.5 1.4E-14 4.7E-19 160.1 7.1 97 164-260 58-164 (396)
28 1flk_A TNF receptor associated 99.5 9.5E-15 3.3E-19 148.1 3.1 88 65-154 74-224 (228)
29 3hqi_A Speckle-type POZ protei 99.4 3.6E-14 1.2E-18 151.7 3.8 89 65-154 5-140 (312)
30 3ihp_A Ubiquitin carboxyl-term 99.4 1.4E-13 4.9E-18 164.6 7.4 101 162-262 338-466 (854)
31 3mhs_A Ubiquitin carboxyl-term 99.3 3.3E-13 1.1E-17 152.9 5.0 99 163-261 136-253 (476)
32 2vhf_A Ubiquitin carboxyl-term 99.1 2.6E-11 9E-16 127.7 4.3 92 168-261 9-110 (374)
33 2foj_A Ubiquitin carboxyl-term 98.4 6.4E-08 2.2E-12 91.8 2.5 88 255-342 68-155 (155)
34 4gwm_A Meprin A subunit beta; 97.1 0.00019 6.4E-09 81.5 3.7 90 62-153 401-566 (592)
35 3ivv_A Speckle-type POZ protei 96.7 0.00023 7.8E-09 66.2 -0.0 69 265-334 73-142 (145)
36 4gjh_A TNF receptor-associated 96.6 0.00065 2.2E-08 65.5 2.0 70 265-334 94-172 (178)
37 3mp2_A Non-structural protein 96.1 0.058 2E-06 52.3 12.4 94 342-476 5-98 (211)
38 1d00_A Tumor necrosis factor r 96.0 0.0027 9.3E-08 60.4 2.7 81 252-334 75-165 (168)
39 1ca9_A TRAF2, protein (TNF rec 95.9 0.002 6.8E-08 62.9 1.2 81 252-334 99-189 (192)
40 2gkw_A TNF receptor-associated 95.8 0.002 6.8E-08 62.9 0.8 81 252-334 96-186 (192)
41 4ghu_A TNF receptor-associated 95.6 0.0023 7.8E-08 62.7 0.3 82 251-334 95-186 (198)
42 1flk_A TNF receptor associated 95.4 0.0064 2.2E-07 61.0 2.6 81 252-334 132-222 (228)
43 2fe8_A PP1AB, ORF1AB, replicas 95.2 0.25 8.6E-06 51.0 14.0 105 341-478 93-197 (315)
44 3hqi_A Speckle-type POZ protei 94.2 0.0093 3.2E-07 62.8 0.3 68 265-333 69-137 (312)
45 1lb6_A TNF receptor-associated 93.7 0.031 1E-06 52.5 3.0 81 252-334 62-155 (160)
46 1qmy_A Protease, leader protea 66.4 2.2 7.6E-05 37.9 1.7 23 348-370 11-33 (167)
47 1qmy_A Protease, leader protea 28.6 20 0.00068 31.9 1.4 34 167-200 12-46 (167)
No 1
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-85 Score=752.39 Aligned_cols=425 Identities=70% Similarity=1.171 Sum_probs=386.8
Q ss_pred CCCCCccccccchhhcCCCCCCCCCccccccceeeeecCCCcccccccccccCCCCCCccccCceEEEEEeecCCCCccc
Q psy17537 262 TESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVS 341 (773)
Q Consensus 262 ~~~~~ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v~~~~p~~~~ 341 (773)
..+.+|++.|++.+.++|++.+..+..+...|+|.....+|||++|+.+.+|.++..|++.||++.+++.+..+.|+++.
T Consensus 87 ~~~~~w~v~a~f~l~l~n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~~ 166 (522)
T 2f1z_A 87 SDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 166 (522)
T ss_dssp CCCSSCBEEEEEEEEECCTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSSC
T ss_pred CCCCCceEEEEEEEEEEcCCCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccccc
Confidence 34568999999999999999887777888899998888899999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcC
Q psy17537 342 WDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG 421 (773)
Q Consensus 342 ~~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~ 421 (773)
|+++..+|++||.|+||||||||+||+|+++|+||++++..+........++.++|++||..|+.+..++.+..++++|+
T Consensus 167 ~~~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~ 246 (522)
T 2f1z_A 167 WDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG 246 (522)
T ss_dssp CCTTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC
T ss_pred CCccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcC
Confidence 99999999999999999999999999999999999999887655555566899999999999999989999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCCCHHHHH
Q psy17537 422 WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESF 501 (773)
Q Consensus 422 ~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L 501 (773)
|..+..+.|||||||+.+||+.|++++++....++|.++|+|++.+.++|..|++.+.+.++|++|+|+|++..+|.++|
T Consensus 247 ~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L 326 (522)
T 2f1z_A 247 WETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESF 326 (522)
T ss_dssp CCTTTSSTTSCHHHHHHHHHHHHHHHHTTSTTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCTTCCBHHHHH
T ss_pred CccCCCcccccHHHHHHHHHHHHHhhccCCccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCCcccchHHH
Confidence 98899999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccCC-CC
Q psy17537 502 KDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKG-PT 580 (773)
Q Consensus 502 ~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~~-~~ 580 (773)
+.|+.+|.++++|+|.|++|+++.|.|+..|.+||+||+|||+||.|+..++...|+++.|.||..|||.+|+...+ ..
T Consensus 327 ~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~ 406 (522)
T 2f1z_A 327 VDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKD 406 (522)
T ss_dssp HHHTCEEEECTTSCBCCGGGCSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTS
T ss_pred HHhhceeecCCcceeecCcCCccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999987788899999999999999999997643 34
Q ss_pred CcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEE
Q psy17537 581 PATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWC 660 (773)
Q Consensus 581 ~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 660 (773)
+..|+|+|||+|.|..++|||+||+|+..++. ||
T Consensus 407 ~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~----------------------------------------------W~ 440 (522)
T 2f1z_A 407 PANYILHAVLVHSGDNHGGHYVVYLNPKGDGK----------------------------------------------WC 440 (522)
T ss_dssp CCEEEEEEEEEEECSSSCSEEEEEECTTSSSC----------------------------------------------CE
T ss_pred CcEEEEEEEEEecccCCCceEEEEEecCCCCC----------------------------------------------EE
Confidence 67899999999999999999999999755666 99
Q ss_pred EEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEechhhhhccccCCCCCCcccccccccCCcc
Q psy17537 661 KFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQEDKIPYLGCNDE 734 (773)
Q Consensus 661 ~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (773)
+|||+.|+++++++|+..+|||.+... ....+.+||||||+|.+..++++.++...+||+++...+.+++.+
T Consensus 441 ~fnD~~V~~v~~~~v~~~~~Gg~~~~~--~~~~~~~aYiLfY~r~~~~~~~~~~~~~~~ip~~~~~~~~~e~~~ 512 (522)
T 2f1z_A 441 KFDDDVVSRCTKEEAIEHNYGGHDDDL--SVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRI 512 (522)
T ss_dssp EEETTEEEECCHHHHSTTSSCCC----------CEEEEEEEEEETTSHHHHTCCCCTTTSCSHHHHHHHHTTTC
T ss_pred EEECceeEECCHHHHHHhhcCCCcccc--ccCcCCceEEEEEEECCchHHhhcccCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999976422 122457899999999999999999999999999999888766654
No 2
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=6.5e-66 Score=563.91 Aligned_cols=341 Identities=73% Similarity=1.192 Sum_probs=302.5
Q ss_pred cccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcCCCC
Q psy17537 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWET 424 (773)
Q Consensus 345 ~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~~~~ 424 (773)
++.+|++||.|+||||||||+||+|+++|+||++++..+........++.++|++||..|+.+..++.+..++.+++|..
T Consensus 1 k~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~~ 80 (353)
T 1nb8_A 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWET 80 (353)
T ss_dssp CCCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTCCB
T ss_pred CCCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcCCCC
Confidence 35789999999999999999999999999999999887655445566899999999999999989999999999999988
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCCCCHHHHHHhc
Q psy17537 425 LDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDY 504 (773)
Q Consensus 425 ~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~ 504 (773)
+..+.|||||||+.+||+.|++++++....++|.++|+|++.+.++|..|++.+.+.++|++|+|+|++..+|.++|+.|
T Consensus 81 ~~~~~QqDA~EFl~~LLd~L~~~~~~~~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~ 160 (353)
T 1nb8_A 81 LDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDY 160 (353)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHHTTTSTTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTTCSBHHHHHHHH
T ss_pred CCcccchhHHHHHHHHHHHHHHHhcCCCccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECCCcchHHHHHHh
Confidence 99999999999999999999999988777889999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccccCC-CCCcc
Q psy17537 505 IEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKG-PTPAT 583 (773)
Q Consensus 505 ~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~~~~-~~~~~ 583 (773)
+.+|.++++++|.|++|+++.|.++..|.++|+||+|||+||.|+..++...|+++.|.||..|||.+|+...+ ..+..
T Consensus 161 ~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~ 240 (353)
T 1nb8_A 161 VAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN 240 (353)
T ss_dssp TCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCE
T ss_pred hCccccCCCccccCCcCccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhcccCCCCCce
Confidence 99999999999999999999999999999999999999999999987777899999999999999999998643 34678
Q ss_pred eEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEe
Q psy17537 584 YILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFD 663 (773)
Q Consensus 584 Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fn 663 (773)
|+|+|||+|.|.+++|||+||+|...++. ||+||
T Consensus 241 Y~L~avv~H~G~~~~GHY~a~v~~~~~~~----------------------------------------------W~~fn 274 (353)
T 1nb8_A 241 YILHAVLVHSGDNHGGHYVVYLNPKGDGK----------------------------------------------WCKFD 274 (353)
T ss_dssp EEEEEEEEEESSTTCCCEEEEECTTSSSC----------------------------------------------CEEEE
T ss_pred EEEEEEEEEeCCCCCcEEEEEEecCCCCC----------------------------------------------EEEEE
Confidence 99999999999999999999999755666 99999
Q ss_pred CccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEechhhhhccccCCCCCCcccccccccCCc
Q psy17537 664 DDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQEDKIPYLGCND 733 (773)
Q Consensus 664 D~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (773)
|+.|+++++++|+..+|||.+.+.. ...+.+||||||+|.+..++++.++...+||+++...+.+++.
T Consensus 275 D~~V~~v~~~~v~~~~~gg~~~~~~--~~~~~~aYiLfY~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 342 (353)
T 1nb8_A 275 DDVVSRCTKEEAIEHNYGGHDDDLS--VRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKR 342 (353)
T ss_dssp TTEEEECCHHHHTGGGSCCC---------CCEEEEEEEEEETTTHHHHTCCCCGGGSCHHHHHHHHHHHH
T ss_pred CcceEECCHHHHHHHhcCCCccccc--cCcCCeEEEEEEEECchhhhhhcccCccccCHHHHHHHHHHHH
Confidence 9999999999999999999764321 1245789999999999999999999999999999988876665
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=7e-58 Score=503.74 Aligned_cols=297 Identities=28% Similarity=0.389 Sum_probs=260.6
Q ss_pred ccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCC-------CCCchHHHHHHHHHHHHhhcCC-CCCChhhhh
Q psy17537 346 KHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES-------DDSNKSVALALQRVFHELQFSD-KPVGTKKLT 417 (773)
Q Consensus 346 ~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~l~~~L~~lf~~l~~~~-~~~~~~~l~ 417 (773)
..+|++||.|+||||||||+||+|+++|+||++++...... ......+..+|+.||..|+.+. .+++|..|.
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 45789999999999999999999999999999998753211 1123578999999999998765 468899998
Q ss_pred hhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC-----------------------------cCCccccccceeEE
Q psy17537 418 KSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTC-----------------------------VEGTVPKLFEGKMI 466 (773)
Q Consensus 418 ~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~-----------------------------~~~~i~~lF~g~~~ 466 (773)
..++ .+.|..+.|||||||+.+||+.||++++... ..++|.++|+|++.
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 8886 3678899999999999999999999986421 23578899999999
Q ss_pred EEEEeccCCceeeeEeeceeEEeecCCC-------------------CCHHHHHHhcCCceeecCCCcccCCCCC-ceee
Q psy17537 467 SFIKCKKVNYTSSRAETFYDIQLNVKGK-------------------KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDA 526 (773)
Q Consensus 467 ~~~~C~~C~~~s~~~e~f~~l~l~i~~~-------------------~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a 526 (773)
+.++|..|++.+.+.++|++|+|+|+.. .+|++||+.|+.+|.++++|+|.|++|+ ++.|
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a 243 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQA 243 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECC
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceE
Confidence 9999999999999999999999999753 4799999999999999999999999995 7789
Q ss_pred eeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecc-ccccccccccCCCCCcceEEeEEEEeeccCCCCcEEEEe
Q psy17537 527 EKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYD-RIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYI 605 (773)
Q Consensus 527 ~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~v 605 (773)
.|+..|.++|+||+|||+||.|+. ....|+++.|.||. .|||.+|+......+..|+|+|||+|.|..++|||+||+
T Consensus 244 ~K~~~i~~lP~vL~i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~ 321 (367)
T 2y6e_A 244 TKKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 321 (367)
T ss_dssp EEEEEEEECCSEEEEEEECEEECS--SCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEE
T ss_pred EEEEEEecCCcEEEEEEeCeeecC--ccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCCCeeeEEE
Confidence 999999999999999999999974 45689999999996 799999998776677899999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCC
Q psy17537 606 NPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDE 685 (773)
Q Consensus 606 r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~ 685 (773)
|...++. ||+|||+.|+++++++|+
T Consensus 322 ~~~~~~~----------------------------------------------W~~fnD~~V~~v~~~~v~--------- 346 (367)
T 2y6e_A 322 KNKLNGK----------------------------------------------WYYFDDSNVSLASEDQIV--------- 346 (367)
T ss_dssp ECTTTCC----------------------------------------------EEEEETTEEEECCGGGTS---------
T ss_pred EcCCCCe----------------------------------------------EEEECCCCceECCHHHcC---------
Confidence 9855666 999999999999999884
Q ss_pred CCCcccCCCCceEEEEEEEech
Q psy17537 686 DSGLTVKHSTNAYMLVYIRESE 707 (773)
Q Consensus 686 ~~~~~~~~~~~aYlLfY~r~~~ 707 (773)
..+||||||+|++.
T Consensus 347 --------~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 347 --------TKAAYVLFYQRRDD 360 (367)
T ss_dssp --------STTEEEEEEEECCC
T ss_pred --------CCCcEEEEEEEcCC
Confidence 46799999999874
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=3.6e-57 Score=494.37 Aligned_cols=300 Identities=27% Similarity=0.484 Sum_probs=259.8
Q ss_pred CCcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCC-----CCCCCchHHHHHHHHHHHHhhc--CCCCCChhh
Q psy17537 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT-----ESDDSNKSVALALQRVFHELQF--SDKPVGTKK 415 (773)
Q Consensus 343 ~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~-----~~~~~~~~l~~~L~~lf~~l~~--~~~~~~~~~ 415 (773)
+++..+|++||.|+||||||||+||+|+++|+||++++.... .......++.++|+.||..|+. ....++|..
T Consensus 2 ~sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp ----CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 456788999999999999999999999999999999986421 1223457899999999999984 345788888
Q ss_pred hhhhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC-----------------------------cCCcccccccee
Q psy17537 416 LTKSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTC-----------------------------VEGTVPKLFEGK 464 (773)
Q Consensus 416 l~~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~-----------------------------~~~~i~~lF~g~ 464 (773)
+...++ .+.|..+.||||+||+.+||+.|+++++... ..+.|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 888876 4678889999999999999999999986422 124688999999
Q ss_pred EEEEEEeccCCceeeeEeeceeEEeecCCCC----CHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCcee
Q psy17537 465 MISFIKCKKVNYTSSRAETFYDIQLNVKGKK----DILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVL 539 (773)
Q Consensus 465 ~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~----sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL 539 (773)
+.+.++|..|++.+.+.++|++|+|+|+... +|+++|+.|+.+|.++|+++|.|+.|+ ++.+.|+..|.++|++|
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL 241 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKIL 241 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEE
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceE
Confidence 9999999999999999999999999998743 899999999999999999999999995 77899999999999999
Q ss_pred EEEeeceEecCCCCcceecCceeeec-cccccccccccCCCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCC
Q psy17537 540 HLHLMRFQYDPVTDCSVKFNDRFEFY-DRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPP 618 (773)
Q Consensus 540 ~i~L~Rf~~d~~~~~~~K~~~~v~fP-~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~ 618 (773)
+|||+||.++. ....|+...|.|| +.|||.+|+... .....|+|+|||+|.|..++|||+||+|...++.
T Consensus 242 ~i~lkRf~~~~--~~~~K~~~~v~fp~~~ldl~~~~~~~-~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~------ 312 (348)
T 3nhe_A 242 VLHLKRFSESR--IRTSKLTTFVNFPLRDLDLREFASEN-TNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGE------ 312 (348)
T ss_dssp EEEECCBCCCS--SCCCBCCCCEECCSSCEECGGGBCTT-CCCCEEEEEEEEEEEECSSCEEEEEEEECTTTCC------
T ss_pred EEEEEcccccC--CceeecCcceeccCCcCCHhhhcCCC-CCCCcEEEEEEEEccCCCCCcccEEEEccCCCCc------
Confidence 99999998763 5778999999999 689999999765 4567899999999999989999999999865666
Q ss_pred CCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceE
Q psy17537 619 FDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAY 698 (773)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aY 698 (773)
||+|||+.|+++++++|. ..+||
T Consensus 313 ----------------------------------------W~~~nD~~V~~v~~~~v~-----------------~~~aY 335 (348)
T 3nhe_A 313 ----------------------------------------WHTFNDSSVTPMSSSQVR-----------------TSDAY 335 (348)
T ss_dssp ----------------------------------------EEEEETTEEEEECGGGTC-----------------CTTEE
T ss_pred ----------------------------------------EEEEeCCCceECCHHHcC-----------------CCCce
Confidence 999999999999999984 56799
Q ss_pred EEEEEEechh
Q psy17537 699 MLVYIRESEL 708 (773)
Q Consensus 699 lLfY~r~~~~ 708 (773)
||||+|.+..
T Consensus 336 ~LfY~r~~~~ 345 (348)
T 3nhe_A 336 LLFYELASPP 345 (348)
T ss_dssp EEEEEECC--
T ss_pred EEEEEecCCC
Confidence 9999998754
No 5
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.6e-56 Score=496.85 Aligned_cols=296 Identities=27% Similarity=0.433 Sum_probs=258.7
Q ss_pred ccccccccccCccccchhhHHHHHhccHHHHHHHHcCCC------C-CCCCchHHHHHHHHHHHHhhcCC-CCCChhhhh
Q psy17537 346 KHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT------E-SDDSNKSVALALQRVFHELQFSD-KPVGTKKLT 417 (773)
Q Consensus 346 ~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~------~-~~~~~~~l~~~L~~lf~~l~~~~-~~~~~~~l~ 417 (773)
..+|++||.|+||||||||+||+|+++|+||++++.... . .......+..+|+.|+..|+.+. ..++|..|.
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 467899999999999999999999999999999986421 1 11123478899999999998765 467888888
Q ss_pred hhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC-----------------------------cCCccccccceeEE
Q psy17537 418 KSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTC-----------------------------VEGTVPKLFEGKMI 466 (773)
Q Consensus 418 ~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~-----------------------------~~~~i~~lF~g~~~ 466 (773)
..++ .+.|..+.|||||||+.+||+.|+++++... ..++|.++|+|++.
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 8776 4678899999999999999999999986531 24578999999999
Q ss_pred EEEEeccCCceeeeEeeceeEEeecCCC--CCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEe
Q psy17537 467 SFIKCKKVNYTSSRAETFYDIQLNVKGK--KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHL 543 (773)
Q Consensus 467 ~~~~C~~C~~~s~~~e~f~~l~l~i~~~--~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L 543 (773)
+.++|..|++.+.+.|+|++|+|+|+.. .+|++||+.|+.+|.++|+|+|.|+.|+ ++.|.|+..|.++|+||+|||
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihL 297 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHL 297 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEE
T ss_pred EEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEe
Confidence 9999999999999999999999999864 5899999999999999999999999995 678999999999999999999
Q ss_pred eceEecCCCCcceecCceeeec-cccccccccccCCCCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCch
Q psy17537 544 MRFQYDPVTDCSVKFNDRFEFY-DRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKD 622 (773)
Q Consensus 544 ~Rf~~d~~~~~~~K~~~~v~fP-~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~~ 622 (773)
+||.|+. ....|++..|.|| +.|||.+|+..+......|+|+|||+|.|.+++|||+||+|...++.
T Consensus 298 kRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~---------- 365 (396)
T 2gfo_A 298 KRFSYDG--RWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQR---------- 365 (396)
T ss_dssp CCEEECS--SSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTE----------
T ss_pred cceeccC--ccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecCCCCCCceEEEEcCCCCCC----------
Confidence 9999985 3467999999999 57999999987655668899999999999999999999999854565
Q ss_pred hhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEE
Q psy17537 623 AEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVY 702 (773)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY 702 (773)
||+|||+.|++|++++|+ +..||||||
T Consensus 366 ------------------------------------W~~fnD~~V~~v~~~~v~-----------------~~~aYiLfY 392 (396)
T 2gfo_A 366 ------------------------------------WFKFDDHEVSDISVSSVK-----------------SSAAYILFY 392 (396)
T ss_dssp ------------------------------------EEEEETTEEEECCHHHHS-----------------CTTEEEEEE
T ss_pred ------------------------------------EEEEeCCCeEECCHHHcC-----------------CCCceEEEE
Confidence 999999999999999984 567999999
Q ss_pred EEec
Q psy17537 703 IRES 706 (773)
Q Consensus 703 ~r~~ 706 (773)
+|.+
T Consensus 393 ~r~~ 396 (396)
T 2gfo_A 393 TSLG 396 (396)
T ss_dssp ECC-
T ss_pred EEcC
Confidence 9864
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=2.5e-56 Score=488.97 Aligned_cols=292 Identities=28% Similarity=0.482 Sum_probs=251.1
Q ss_pred ccccccccCccccchhhHHHHHhccHHHHHHHHcCCC----CCCCCchHHHHHHHHHHHHhhcCC--CCCChhhhhhhcC
Q psy17537 348 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT----ESDDSNKSVALALQRVFHELQFSD--KPVGTKKLTKSFG 421 (773)
Q Consensus 348 ~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~----~~~~~~~~l~~~L~~lf~~l~~~~--~~~~~~~l~~~l~ 421 (773)
+|++||.|+||||||||+||+|+++|+||++++.... .......++..+|+.||..|+... .+++|..+...++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 5899999999999999999999999999999986432 111223479999999999998764 5789999988886
Q ss_pred --CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC--------------------------------------------cCC
Q psy17537 422 --WETLDSFMQHDVQEFLRVLLDKLEIKMKGTC--------------------------------------------VEG 455 (773)
Q Consensus 422 --~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~--------------------------------------------~~~ 455 (773)
.+.|..+.||||+||+.+||+.||++++... ..+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 5778999999999999999999999986432 124
Q ss_pred ccccccceeEEEEEEeccCCceeeeEeeceeEEeecCCC------CCHHHHHHhcCCceeecCCCcccCCCCC-ceeeee
Q psy17537 456 TVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGK------KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEK 528 (773)
Q Consensus 456 ~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~------~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k 528 (773)
+|.++|+|++.+.++|..|++.+.+.++|++|+|+++.. .+|+++|+.|+.+|.++++|+|.|+.|+ ++.+.|
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEE
T ss_pred cccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEE
Confidence 589999999999999999999999999999999999763 4999999999999999999999999995 788999
Q ss_pred eeEeccCCceeEEEeeceEecCCCCcceecCceeeec-cccccccccccCCCCCcceEEeEEEEeeccCCCCcEEEEecc
Q psy17537 529 GVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFY-DRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINP 607 (773)
Q Consensus 529 ~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP-~~Ldl~~~~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~ 607 (773)
+..|.++|+||+|||+||.++ .+...|+...|.|| +.|||.+|+... .....|+|+|||+|.|.+++|||+||+|.
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~--~~~~~K~~~~v~fp~~~l~l~~~~~~~-~~~~~Y~L~avv~H~G~~~~GHY~~~~~~ 317 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSAS--RGSIKKSSVGVDFPLQRLSLGDFASDK-AGSPVYQLYALCNHSGSVHYGHYTALCRC 317 (355)
T ss_dssp EEEEEECCSEEEEEECCEECC--SSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEcccCChheEEEhhheecC--CCCceECCcceeCCccccCchhhccCC-CCCcceEEEEEEEecCCCCCCeEEEEEEc
Confidence 999999999999999999986 46678999999999 569999998764 45678999999999999999999999998
Q ss_pred CCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCC
Q psy17537 608 KGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDS 687 (773)
Q Consensus 608 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~ 687 (773)
++. ||+|||+.|+++++++|+
T Consensus 318 --~~~----------------------------------------------W~~~nD~~V~~v~~~~v~----------- 338 (355)
T 3i3t_A 318 --QTG----------------------------------------------WHVYNDSRVSPVSENQVA----------- 338 (355)
T ss_dssp --TTE----------------------------------------------EEEEETTEEEEECHHHHH-----------
T ss_pred --CCe----------------------------------------------EEEEcCCCcEECCHHHcC-----------
Confidence 455 999999999999999996
Q ss_pred CcccCCCCceEEEEEEEech
Q psy17537 688 GLTVKHSTNAYMLVYIRESE 707 (773)
Q Consensus 688 ~~~~~~~~~aYlLfY~r~~~ 707 (773)
..+||||||+|.+.
T Consensus 339 ------~~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 339 ------SSEGYVLFYQLMQE 352 (355)
T ss_dssp ------TSCCSEEEEEEC--
T ss_pred ------CCCcEEEEEEeccC
Confidence 45799999999865
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=6.7e-56 Score=494.50 Aligned_cols=299 Identities=21% Similarity=0.347 Sum_probs=256.4
Q ss_pred cccccccccCccccchhhHHHHHhccHHHHHHHHcCCCC--C---CCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcC
Q psy17537 347 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--S---DDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG 421 (773)
Q Consensus 347 ~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~--~---~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~ 421 (773)
..+++||.|+||||||||+||+|+++|+||++++..... . .....+++++|+.||..|+.+..++.|..|+..++
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~ 90 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 90 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHH
Confidence 346799999999999999999999999999999986543 1 12356899999999999998778899999888775
Q ss_pred --CCCCC------CCCCCcHHHHHHHHHHHHHHHhcCCC-------------------cCCccccccceeEEEEEEeccC
Q psy17537 422 --WETLD------SFMQHDVQEFLRVLLDKLEIKMKGTC-------------------VEGTVPKLFEGKMISFIKCKKV 474 (773)
Q Consensus 422 --~~~~~------~~~QqDA~Efl~~Ll~~L~~~~~~~~-------------------~~~~i~~lF~g~~~~~~~C~~C 474 (773)
.+.|. ++.|||||||+.+||+.|+++++... ..++|.++|+|++.+.++|..|
T Consensus 91 ~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C 170 (404)
T 2ayn_A 91 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 170 (404)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCC
Confidence 23343 68999999999999999999986532 3468999999999999999999
Q ss_pred Ccee--eeEeeceeEEeecCCC-CCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecC
Q psy17537 475 NYTS--SRAETFYDIQLNVKGK-KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDP 550 (773)
Q Consensus 475 ~~~s--~~~e~f~~l~l~i~~~-~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~ 550 (773)
++.+ .+.++|++|+|+|+.. .+|+++|+.++. |.++ +.|+.|+ .+.+.|+..|.+||+||+|||+||.|+.
T Consensus 171 ~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~ 245 (404)
T 2ayn_A 171 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKE 245 (404)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCC
T ss_pred CCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEec
Confidence 9984 7999999999999875 589999999986 4444 7899995 5678999999999999999999999998
Q ss_pred CCCcceecCceeeeccccccccccccC-------------------------------------------------CCCC
Q psy17537 551 VTDCSVKFNDRFEFYDRIELDDFLKEK-------------------------------------------------GPTP 581 (773)
Q Consensus 551 ~~~~~~K~~~~v~fP~~Ldl~~~~~~~-------------------------------------------------~~~~ 581 (773)
.++...|+++.|.||..|||.+|+..+ ....
T Consensus 246 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 325 (404)
T 2ayn_A 246 KESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNC 325 (404)
T ss_dssp SSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCC
T ss_pred ccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCC
Confidence 777889999999999999999998641 1234
Q ss_pred cceEEeEEEEeecc-CCCCcEEEEeccCCCCCCCCCCCCCchhhHHHhhhccccccccccccccccccccccCCCCCcEE
Q psy17537 582 ATYILHAVLVHSGD-NHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWC 660 (773)
Q Consensus 582 ~~Y~L~aVv~H~G~-~~~GHY~a~vr~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 660 (773)
..|+|+|||+|.|. +++|||+||||. .++. ||
T Consensus 326 ~~Y~L~avv~H~G~s~~~GHY~a~v~~-~~~~----------------------------------------------W~ 358 (404)
T 2ayn_A 326 GYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDE----------------------------------------------WI 358 (404)
T ss_dssp SEEEEEEEEEEESSSTTSSEEEEEEEE-ETTE----------------------------------------------EE
T ss_pred ceEEEEEEEEecCCCCCCCCeEEEEEC-CCCe----------------------------------------------EE
Confidence 78999999999997 999999999998 3555 99
Q ss_pred EEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEech
Q psy17537 661 KFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESE 707 (773)
Q Consensus 661 ~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~~ 707 (773)
+|||+.|+++++++|+...+|| .+.+||||||+|++.
T Consensus 359 ~fnD~~V~~v~~~~v~~~~~g~----------~~~~aYiLfY~r~~~ 395 (404)
T 2ayn_A 359 KFDDDKVSIVTPEDILRLSGGG----------DWHIAYVLLYGPRRV 395 (404)
T ss_dssp EEBTTBCCCBCHHHHGGGGSSS----------SSCEEEEEEEECC--
T ss_pred EeecccceecCHHHHHhhhCCC----------CCceEEEEEEEecCC
Confidence 9999999999999998877665 468899999999864
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=6.4e-55 Score=488.02 Aligned_cols=295 Identities=24% Similarity=0.376 Sum_probs=247.7
Q ss_pred ccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCC---------chHHHHHHHHHHHHhhcCC-CCCChhh
Q psy17537 346 KHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDS---------NKSVALALQRVFHELQFSD-KPVGTKK 415 (773)
Q Consensus 346 ~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~---------~~~l~~~L~~lf~~l~~~~-~~~~~~~ 415 (773)
...+++||.|+||||||||+||+|+++|+||++++......... ..+++++|++||..|+.+. .+++|..
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~ 99 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVV 99 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHH
T ss_pred cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHH
Confidence 35578999999999999999999999999999998865332111 4589999999999999876 6889998
Q ss_pred hhhhcC--CCCCC-------CCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCcee--eeEeec
Q psy17537 416 LTKSFG--WETLD-------SFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTS--SRAETF 484 (773)
Q Consensus 416 l~~~l~--~~~~~-------~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s--~~~e~f 484 (773)
|+..++ .+.|. .+.||||+||+.+||+.|+++++. ++|.++|+ ++.+.++|..|++.+ .+.++|
T Consensus 100 ~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~----~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f 174 (415)
T 1vjv_A 100 LLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD----KFSEDFRI-QFKTTIKDTANDNDITVKENESD 174 (415)
T ss_dssp HHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH----HHHTTTCE-EEEEEEEETTEEEEEEEECCCEE
T ss_pred HHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc----chHHHHHH-hheEEEEECCCCCCccccccccc
Confidence 888775 23454 789999999999999999999864 57899999 999999999999986 589999
Q ss_pred eeEEeecCCC-CCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCcee
Q psy17537 485 YDIQLNVKGK-KDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRF 562 (773)
Q Consensus 485 ~~l~l~i~~~-~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v 562 (773)
++|+|+|+.. .+|.++|+.++.+ .++ +.|+.|+ .+.+.|+..|.+||+||+|||+||.|+..++...|+++.|
T Consensus 175 ~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V 249 (415)
T 1vjv_A 175 SKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKV 249 (415)
T ss_dssp SCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCC
T ss_pred eeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCcc
Confidence 9999999876 5899999999874 343 7899994 6789999999999999999999999998778889999999
Q ss_pred eeccccccccccccC-----------------------------------------------------------------
Q psy17537 563 EFYDRIELDDFLKEK----------------------------------------------------------------- 577 (773)
Q Consensus 563 ~fP~~Ldl~~~~~~~----------------------------------------------------------------- 577 (773)
.||..|||.+|+..+
T Consensus 250 ~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 329 (415)
T 1vjv_A 250 VFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYK 329 (415)
T ss_dssp BCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcc
Confidence 999999999997531
Q ss_pred ----------CCCCcceEEeEEEEeecc-CCCCcEEEEecc-CCCCCCCCCCCCCchhhHHHhhhccccccccccccccc
Q psy17537 578 ----------GPTPATYILHAVLVHSGD-NHGGHYVVYINP-KGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHA 645 (773)
Q Consensus 578 ----------~~~~~~Y~L~aVv~H~G~-~~~GHY~a~vr~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (773)
......|+|+|||+|.|. +++|||+||+|. ..++.
T Consensus 330 ~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~--------------------------------- 376 (415)
T 1vjv_A 330 KHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENK--------------------------------- 376 (415)
T ss_dssp TTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTC---------------------------------
T ss_pred cccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCc---------------------------------
Confidence 023478999999999996 999999999998 44555
Q ss_pred cccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEEEEEec
Q psy17537 646 YLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRES 706 (773)
Q Consensus 646 ~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLfY~r~~ 706 (773)
||+|||+.|+++++++|+...+|| .+.+||||||+|++
T Consensus 377 -------------W~~fnD~~V~~v~~~~v~~~~~g~----------~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 377 -------------WYKFNDDKVSVVEKEKIESLAGGG----------ESDSALILMYKGFG 414 (415)
T ss_dssp -------------EEEEETTEEEEECHHHHHGGGCCT----------TSCEEEEEEEEETT
T ss_pred -------------EEEeECCcCeEcCHHHHhhhcCCC----------CcceEEEEEEEecC
Confidence 999999999999999999887776 36789999999964
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=7.9e-53 Score=479.34 Aligned_cols=296 Identities=27% Similarity=0.456 Sum_probs=251.4
Q ss_pred cccccccccccCccccchhhHHHHHhccHHHHHHHHcCC----CCCCCCchHHHHHHHHHHHHhhcCCC----------C
Q psy17537 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMP----TESDDSNKSVALALQRVFHELQFSDK----------P 410 (773)
Q Consensus 345 ~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~----~~~~~~~~~l~~~L~~lf~~l~~~~~----------~ 410 (773)
...+|++||.|+||||||||+||+|+++|+||++++... .....+..++.++|+.+|..|+.... .
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~ 215 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTST 215 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CC
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccc
Confidence 356799999999999999999999999999999998542 22234456799999999999976421 2
Q ss_pred CChhhhhhhcC-----CCCCCCCCCCcHHHHHHHHHHHHHHHhcCC-------------CcCCccccccceeEEEEEEec
Q psy17537 411 VGTKKLTKSFG-----WETLDSFMQHDVQEFLRVLLDKLEIKMKGT-------------CVEGTVPKLFEGKMISFIKCK 472 (773)
Q Consensus 411 ~~~~~l~~~l~-----~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~-------------~~~~~i~~lF~g~~~~~~~C~ 472 (773)
+.+..+...+. .+.|.++.||||+|||.+||+.|++++... ...++|.++|+|++.+.++|.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~ 295 (476)
T 3mhs_A 216 NRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCP 295 (476)
T ss_dssp CSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECT
T ss_pred cCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEEC
Confidence 33333333221 366889999999999999999999987431 124578999999999999999
Q ss_pred cCCceee-eEeeceeEEeecCCCCCHHHHHHhcCCceeecCCCcccCCCCC-ceeeeeeeEeccCCceeEEEeeceEecC
Q psy17537 473 KVNYTSS-RAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHG-LQDAEKGVTFENLPPVLHLHLMRFQYDP 550 (773)
Q Consensus 473 ~C~~~s~-~~e~f~~l~l~i~~~~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~L~Rf~~d~ 550 (773)
.|+..+. +.++|++|+|+|++..+|+++|+.|+.+|.+++.+ |.|+.|+ ++.+.|+..|.++|+||+|||+||.|+.
T Consensus 296 ~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~ 374 (476)
T 3mhs_A 296 GCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL 374 (476)
T ss_dssp TTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECT
T ss_pred CCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccC
Confidence 9999864 58999999999999999999999999999999755 9999995 6789999999999999999999999975
Q ss_pred CCCcceecCceeeeccccccccccccCC---------CCCcceEEeEEEEeeccCCCCcEEEEeccCCCCCCCCCCCCCc
Q psy17537 551 VTDCSVKFNDRFEFYDRIELDDFLKEKG---------PTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDK 621 (773)
Q Consensus 551 ~~~~~~K~~~~v~fP~~Ldl~~~~~~~~---------~~~~~Y~L~aVv~H~G~~~~GHY~a~vr~~~~~~~~~~p~~~~ 621 (773)
.+...|+++.|.||..|||.+|+.... .....|+|+|||+|.|.+++|||+||+|. .+++
T Consensus 375 -~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~-~~~~--------- 443 (476)
T 3mhs_A 375 -NGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI-SGGQ--------- 443 (476)
T ss_dssp -TSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC-TTSC---------
T ss_pred -CCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC-CCCc---------
Confidence 356889999999999999999987643 24578999999999999999999999987 4556
Q ss_pred hhhHHHhhhccccccccccccccccccccccCCCCCcEEEEeCccceecCHHHHHHhhcCCCCCCCCcccCCCCceEEEE
Q psy17537 622 DAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLV 701 (773)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~~~~~~~~~~~aYlLf 701 (773)
||+|||+.|+++++++|+ ...|||||
T Consensus 444 -------------------------------------W~~fnD~~V~~v~~~~v~-----------------~~~aYiLf 469 (476)
T 3mhs_A 444 -------------------------------------WFKFNDSMVSSISQEEVL-----------------KEQAYLLF 469 (476)
T ss_dssp -------------------------------------EEEEETTEEEEECHHHHT-----------------TSCEEEEE
T ss_pred -------------------------------------EEEEeCCceEECCHHHhc-----------------cCCcEEEE
Confidence 999999999999999996 46799999
Q ss_pred EEEec
Q psy17537 702 YIRES 706 (773)
Q Consensus 702 Y~r~~ 706 (773)
|+|++
T Consensus 470 Y~r~~ 474 (476)
T 3mhs_A 470 YTIRQ 474 (476)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99975
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-49 Score=476.39 Aligned_cols=224 Identities=18% Similarity=0.301 Sum_probs=197.3
Q ss_pred cccccccccccCccccchhhHHHHHhccHHHHHHHHcCCC-----CCCCCchHHHHHHHHHHHHhhcC------------
Q psy17537 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT-----ESDDSNKSVALALQRVFHELQFS------------ 407 (773)
Q Consensus 345 ~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~-----~~~~~~~~l~~~L~~lf~~l~~~------------ 407 (773)
...+|++||.|+||||||||+||+|+++|+||++++.... .......++.++|++||..|+..
T Consensus 339 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~ 418 (854)
T 3ihp_A 339 LFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDG 418 (854)
T ss_dssp CCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-----------
T ss_pred ccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccc
Confidence 3467999999999999999999999999999999874211 23345668999999999999753
Q ss_pred ---------CCCCChhhhhhhcC--CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCc
Q psy17537 408 ---------DKPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNY 476 (773)
Q Consensus 408 ---------~~~~~~~~l~~~l~--~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~ 476 (773)
...+.|..|...++ .+.|..+.||||+|||.+||+.|+++++. .+.|.++|+|++.+.++|..|++
T Consensus 419 ~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~---~s~i~~lF~G~l~s~i~C~~C~~ 495 (854)
T 3ihp_A 419 ERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS---SENPNEVFRFLVEEKIKCLATEK 495 (854)
T ss_dssp ----------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT---SCCGGGGTCEEEEEEEEETTTTE
T ss_pred ccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc---cCCchhhcCceEEEEEEecCCCC
Confidence 23678888888886 36788999999999999999999998864 45799999999999999999999
Q ss_pred eeeeEeeceeEEeecCCC--------------------------------CCHHHHHHhcCCceeecCCCcccCCCCC-c
Q psy17537 477 TSSRAETFYDIQLNVKGK--------------------------------KDILESFKDYIEPEVLEGDNKYDAGVHG-L 523 (773)
Q Consensus 477 ~s~~~e~f~~l~l~i~~~--------------------------------~sl~~~L~~~~~~E~l~~~n~~~C~~c~-~ 523 (773)
.+.+.++|+.|+|+|+.. .+|++||+.|+.+|.+++ |.|+.|+ +
T Consensus 496 vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k 572 (854)
T 3ihp_A 496 VKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAK 572 (854)
T ss_dssp EEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEE
T ss_pred EeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCc
Confidence 999999999999999852 489999999999999996 9999995 6
Q ss_pred eeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeeccccccccccc
Q psy17537 524 QDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLK 575 (773)
Q Consensus 524 ~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl~~~~~ 575 (773)
+.+.|+..|.+||+||+|||+||.|+.. +...|++..|.||..|||.+|+.
T Consensus 573 ~~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~~ 623 (854)
T 3ihp_A 573 SVAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLRG 623 (854)
T ss_dssp EEEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGBC
T ss_pred ceeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhcc
Confidence 7899999999999999999999999764 67789999999999999999865
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.93 E-value=1.4e-26 Score=265.49 Aligned_cols=204 Identities=73% Similarity=1.159 Sum_probs=178.3
Q ss_pred CcccccccccEEEEEEcCccccccccCCCCeEecCccEEEEEEeCC-----c----------------------------
Q psy17537 58 DDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKL-----L---------------------------- 104 (773)
Q Consensus 58 ~~~~~~~~~~~~~w~I~~fs~l~~~~~S~~F~vgg~~W~i~~yP~g-----~---------------------------- 104 (773)
++++..++.++|+|+|+|||.+++.++|++|.||||+|||++||+| .
T Consensus 22 ~~~~~~~~~~~~~w~I~nfS~~~~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~f~l~ 101 (522)
T 2f1z_A 22 EDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLK 101 (522)
T ss_dssp ----CCCSEEEEEEEESSCTTCCSCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTCCCSSCBEEEEEEEE
T ss_pred cccccccCCcEEEEEECChhhcCCceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCCCCCCceEEEEEEEE
Confidence 3345678899999999999999998889999999999999999986 1
Q ss_pred ----------ccceeeeeeeccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCCCCcccccCCCCCcccceeeC
Q psy17537 105 ----------VRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQ 174 (773)
Q Consensus 105 ----------~~~~~~~~f~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~~~~~~~~~~~~~g~~GL~Nl 174 (773)
......++|+....+|||.+||++++|.++.+|||+||+++|+|+|.|..++++.|+++..+|++||.|+
T Consensus 102 l~n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~~~~~~~~~g~~GL~Nl 181 (522)
T 2f1z_A 102 IINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQ 181 (522)
T ss_dssp ECCTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSSCCCTTTTTSCCCBCCC
T ss_pred EEcCCCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccccCCccccCCccceecC
Confidence 0113356687778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCCCCcChHHHHHHcCCCCCCCCCCCChhhh
Q psy17537 175 GATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEF 254 (773)
Q Consensus 175 GnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~QqDa~E~ 254 (773)
||||||||+||||+++++||++++...........++..+|+++|..|+.+..++.|..++.+++|+.+.++.|||||||
T Consensus 182 GnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~~~~~~~QqDa~Ef 261 (522)
T 2f1z_A 182 GATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQEL 261 (522)
T ss_dssp --CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTCCCTTTSSTTSCHHHH
T ss_pred cccHHHHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcCCccCCCcccccHHHH
Confidence 99999999999999999999999987654444556789999999999999888999999999999999999999999999
Q ss_pred hhhhcCC
Q psy17537 255 LRVCNGE 261 (773)
Q Consensus 255 l~~~~~e 261 (773)
|..+++.
T Consensus 262 l~~LLd~ 268 (522)
T 2f1z_A 262 CRVLLDN 268 (522)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 12
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.93 E-value=2.8e-26 Score=240.90 Aligned_cols=175 Identities=17% Similarity=0.214 Sum_probs=114.2
Q ss_pred cccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCC--CchHHHHHH-HHHHHHhhcCCCCCChhhhhhhc-----
Q psy17537 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDD--SNKSVALAL-QRVFHELQFSDKPVGTKKLTKSF----- 420 (773)
Q Consensus 349 g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~--~~~~l~~~L-~~lf~~l~~~~~~~~~~~l~~~l----- 420 (773)
.++||.|+||||||||.||+|+.+|.+++.|+..+....+ ....+..+| ..||..|.. .++.|..++..|
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~p 85 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILE 85 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhH
Confidence 3699999999999999999999999999999987654433 224688888 899999987 555555444433
Q ss_pred --CCCCCCCCCCCcHHHHHHHHHHHHHHH-hc--CCC-----cCCccccccceeEEEEEEeccCCceeeeEeeceeEEee
Q psy17537 421 --GWETLDSFMQHDVQEFLRVLLDKLEIK-MK--GTC-----VEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLN 490 (773)
Q Consensus 421 --~~~~~~~~~QqDA~Efl~~Ll~~L~~~-~~--~~~-----~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~ 490 (773)
++..-.+++||||.||+..||..|... +. ... ..+.+.++|. ...+.
T Consensus 86 Qfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~----------------E~~e~------- 142 (374)
T 2vhf_A 86 KVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM----------------EKNEK------- 142 (374)
T ss_dssp HHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC----------------CCC---------
T ss_pred HHhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc----------------Ccccc-------
Confidence 333333689999999999999988543 21 000 0012223332 00000
Q ss_pred cCCCCCHHHHHHhcCCceeecCCCcccCCCCCceeeeeeeEeccCCceeEEEeeceEecCCCCcceecCceeeecccccc
Q psy17537 491 VKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIEL 570 (773)
Q Consensus 491 i~~~~sl~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~L~Rf~~d~~~~~~~K~~~~v~fP~~Ldl 570 (773)
....++...++..+ ....+.|.++|++|+||+.|| ++..||..+|.||.+||+
T Consensus 143 -~~~e~~~qL~e~nf--------------------l~~gikisrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDv 195 (374)
T 2vhf_A 143 -VGVPTIQQLLEWSF--------------------INSNLKFAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNI 195 (374)
T ss_dssp -CCCCBHHHHHHHHH--------------------HHHTEEESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECC
T ss_pred -cCCcHHHHhhhHHH--------------------HHcCCeeecCCcceEEeeecc------CccccccCCCCCcchhcc
Confidence 00233444332111 122334999999999999999 467899999999999999
Q ss_pred ccccc
Q psy17537 571 DDFLK 575 (773)
Q Consensus 571 ~~~~~ 575 (773)
..++.
T Consensus 196 tdl~t 200 (374)
T 2vhf_A 196 TDLLE 200 (374)
T ss_dssp GGGBS
T ss_pred HhhcC
Confidence 87764
No 13
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.82 E-value=1.1e-20 Score=180.77 Aligned_cols=105 Identities=58% Similarity=1.085 Sum_probs=88.1
Q ss_pred CCCcccccccccEEEEEEcCccccccccCCCCeEecCccEEEEEEeCCcc------------------------------
Q psy17537 56 DADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVKLLV------------------------------ 105 (773)
Q Consensus 56 ~~~~~~~~~~~~~~~w~I~~fs~l~~~~~S~~F~vgg~~W~i~~yP~g~~------------------------------ 105 (773)
+.+++++.++.++|+|+|+|||.+++.++|++|.+||++|+|.+||+|+.
T Consensus 8 ~~~~~~~~~~~~~~~w~I~nfS~~~~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~~~ 87 (155)
T 2foj_A 8 DMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAV 87 (155)
T ss_dssp -----CTTCSEEEEEEEESSGGGCCSCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTTCCCSSCEEEEEEE
T ss_pred ccccCCCcCCCcEEEEEECChhhcCCceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCEEEEEEE
Confidence 34455678889999999999999988888999999999999999998510
Q ss_pred -------------cceeeeeeeccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCCCCcccc
Q psy17537 106 -------------RRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSW 160 (773)
Q Consensus 106 -------------~~~~~~~f~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~~~~~~~ 160 (773)
.....+.|.....+|||.+||++++|.++.+|||+||+++|+|+|+|.+++|++|
T Consensus 88 l~l~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~w 155 (155)
T 2foj_A 88 LKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW 155 (155)
T ss_dssp EEECCSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSCC
T ss_pred EEEEcCCCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcccccC
Confidence 0123456777778999999999999999999999999999999999999999877
No 14
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.68 E-value=3.7e-17 Score=177.98 Aligned_cols=99 Identities=87% Similarity=1.229 Sum_probs=88.4
Q ss_pred CCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHhcCCCCcChHHHHHHcCCCC
Q psy17537 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWET 242 (773)
Q Consensus 163 ~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~~ 242 (773)
++.+|++||.|+||||||||+||||+++++||++++...........++..+|+.+|..|+.+..++.|..++.+++|+.
T Consensus 1 k~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~~ 80 (353)
T 1nb8_A 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWET 80 (353)
T ss_dssp CCCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTCCB
T ss_pred CCCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcCCCC
Confidence 46789999999999999999999999999999999887654444556789999999999999888999999999999999
Q ss_pred CCCCCCCChhhhhhhhcCC
Q psy17537 243 LDSFMQHDVQEFLRVCNGE 261 (773)
Q Consensus 243 ~~~~~QqDa~E~l~~~~~e 261 (773)
|.++.||||||||..+++.
T Consensus 81 ~~~~~QqDA~EFl~~LLd~ 99 (353)
T 1nb8_A 81 LDSFMQHDVQELCRVLLDN 99 (353)
T ss_dssp TTTTTTSCHHHHHHHHHHH
T ss_pred CCcccchhHHHHHHHHHHH
Confidence 9999999999999987653
No 15
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.68 E-value=1.7e-17 Score=156.66 Aligned_cols=89 Identities=21% Similarity=0.332 Sum_probs=75.0
Q ss_pred cccEEEEEEcCccccc----cccCCCCeEecCc---cEEEEEEeCCcc-----------------------------c--
Q psy17537 65 SEVRFSFKVENIHNLK----DTALSPPHYARNL---PWKIMFMVKLLV-----------------------------R-- 106 (773)
Q Consensus 65 ~~~~~~w~I~~fs~l~----~~~~S~~F~vgg~---~W~i~~yP~g~~-----------------------------~-- 106 (773)
..++|+|+|+|||.++ +.++||+|.+||| +|+|.+||+|+. .
T Consensus 9 ~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~w~v~a~f~l~llnq 88 (145)
T 3ivv_A 9 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNA 88 (145)
T ss_dssp CEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEECSSSEEEEEEEEEEECT
T ss_pred EEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCCCCCcEEEEEEEEEEec
Confidence 4689999999999987 4578999999997 999999999821 0
Q ss_pred ---------ceeeeeeeccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCC
Q psy17537 107 ---------RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADA 154 (773)
Q Consensus 107 ---------~~~~~~f~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~ 154 (773)
....++|. ...+|||.+||++++|.++++|||+||+++|+|+|.|+.
T Consensus 89 ~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 89 KGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp TSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred CCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence 01234565 467899999999999998899999999999999999863
No 16
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.62 E-value=1.3e-16 Score=155.87 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=74.7
Q ss_pred ccccEEEEEEcCcccccc--------ccCCCCeEec--CccEEEEEEeCCcc----------------------------
Q psy17537 64 RSEVRFSFKVENIHNLKD--------TALSPPHYAR--NLPWKIMFMVKLLV---------------------------- 105 (773)
Q Consensus 64 ~~~~~~~w~I~~fs~l~~--------~~~S~~F~vg--g~~W~i~~yP~g~~---------------------------- 105 (773)
...|+|+|+|+|||.+++ .++|++|.+| ||+|+|.+||+|+.
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a 100 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 100 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence 446999999999999875 5789999999 99999999999821
Q ss_pred ------cce---------------eeeeee----ccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCCC
Q psy17537 106 ------RRR---------------IQHLFF----IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 155 (773)
Q Consensus 106 ------~~~---------------~~~~f~----~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~~ 155 (773)
.++ ..+.|. ....+|||.+||++++|.++++|||+||+++|+|+|.+...
T Consensus 101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 000 012343 23568999999999999988899999999999999987543
No 17
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=164.93 Aligned_cols=99 Identities=26% Similarity=0.328 Sum_probs=82.7
Q ss_pred CCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCC-------CCCCccHHHHHHHHHHHHHhcCCC-CcChHHH
Q psy17537 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE-------SDDSNKSVALALQRVFHELQFSDK-PVGTKKL 234 (773)
Q Consensus 163 ~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~-------~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~~~ 234 (773)
+..+|++||.|+||||||||+||||+++++|+++++..... +......+..+++.||..|+.+.. .+.|..+
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 45689999999999999999999999999999999875421 112345899999999999997764 6899999
Q ss_pred HHHcC--CCCCCCCCCCChhhhhhhhcCC
Q psy17537 235 TKSFG--WETLDSFMQHDVQEFLRVCNGE 261 (773)
Q Consensus 235 ~~~l~--~~~~~~~~QqDa~E~l~~~~~e 261 (773)
+..++ .+.|.++.||||||||..+++.
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~ 111 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDG 111 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHH
Confidence 98887 4678999999999999987653
No 18
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.55 E-value=1.9e-15 Score=164.01 Aligned_cols=100 Identities=27% Similarity=0.426 Sum_probs=81.4
Q ss_pred cCCCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCC-----CCCCCccHHHHHHHHHHHHHhcC--CCCcChHH
Q psy17537 161 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT-----ESDDSNKSVALALQRVFHELQFS--DKPVGTKK 233 (773)
Q Consensus 161 ~~~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~-----~~~~~~~~l~~~l~~l~~~l~~~--~~~~~~~~ 233 (773)
+++..+|++||.|+||||||||+||+|+++++||++++.... ........+..+++.||..|+.. ...+.|..
T Consensus 2 ~sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp ----CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 467789999999999999999999999999999999987532 12234568999999999999843 34689999
Q ss_pred HHHHcC--CCCCCCCCCCChhhhhhhhcC
Q psy17537 234 LTKSFG--WETLDSFMQHDVQEFLRVCNG 260 (773)
Q Consensus 234 ~~~~l~--~~~~~~~~QqDa~E~l~~~~~ 260 (773)
++..+. .+.|.++.||||||||..+++
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd 110 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLD 110 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHH
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHH
Confidence 988886 567899999999999998764
No 19
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.54 E-value=3.4e-15 Score=162.50 Aligned_cols=96 Identities=28% Similarity=0.462 Sum_probs=78.3
Q ss_pred CcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCC----CCCCCccHHHHHHHHHHHHHhcCC--CCcChHHHHHHcC
Q psy17537 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT----ESDDSNKSVALALQRVFHELQFSD--KPVGTKKLTKSFG 239 (773)
Q Consensus 166 ~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~----~~~~~~~~l~~~l~~l~~~l~~~~--~~~~~~~~~~~l~ 239 (773)
+|++||.|+||||||||+||+|+++++||++++.... ........+..+++.||..|+... .++.|..+...+.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 5899999999999999999999999999999987542 122334579999999999999765 4799999988887
Q ss_pred --CCCCCCCCCCChhhhhhhhcCC
Q psy17537 240 --WETLDSFMQHDVQEFLRVCNGE 261 (773)
Q Consensus 240 --~~~~~~~~QqDa~E~l~~~~~e 261 (773)
++.|.++.||||||||..+++.
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~ 104 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMER 104 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHH
T ss_pred HhChhhCCCCccCHHHHHHHHHHH
Confidence 6789999999999999987653
No 20
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.54 E-value=1.6e-15 Score=149.98 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=71.4
Q ss_pred cccEEEEEEcCcccccc--------ccCCCCeEec--CccEEEEEEeCCcc-----------------------------
Q psy17537 65 SEVRFSFKVENIHNLKD--------TALSPPHYAR--NLPWKIMFMVKLLV----------------------------- 105 (773)
Q Consensus 65 ~~~~~~w~I~~fs~l~~--------~~~S~~F~vg--g~~W~i~~yP~g~~----------------------------- 105 (773)
..|+|+|+|+|||.+++ .++||+|.+| ||+|+|.+||||+.
T Consensus 38 ~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a~ 117 (198)
T 4ghu_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (198)
T ss_dssp SSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEEE
Confidence 46999999999998874 4779999999 99999999999921
Q ss_pred -----ccee------ee---------e----eeccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCCC
Q psy17537 106 -----RRRI------QH---------L----FFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAP 155 (773)
Q Consensus 106 -----~~~~------~~---------~----f~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~~ 155 (773)
.++. .. . |...+.+|||.+||++++|. ++|||+||+++|+|+|.|+..
T Consensus 118 ~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~ 189 (198)
T 4ghu_A 118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDL 189 (198)
T ss_dssp EEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTC
T ss_pred EEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccC
Confidence 0000 00 1 22345689999999999996 589999999999999999853
No 21
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.53 E-value=2.4e-15 Score=148.79 Aligned_cols=90 Identities=16% Similarity=0.250 Sum_probs=71.7
Q ss_pred ccccEEEEEEcCcccccc--------ccCCCCeEe--cCccEEEEEEeCCccc---------------------------
Q psy17537 64 RSEVRFSFKVENIHNLKD--------TALSPPHYA--RNLPWKIMFMVKLLVR--------------------------- 106 (773)
Q Consensus 64 ~~~~~~~w~I~~fs~l~~--------~~~S~~F~v--gg~~W~i~~yP~g~~~--------------------------- 106 (773)
...++|+|+|+|||.+++ .++||+|.+ |||+|+|.+||+|...
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 457999999999999873 377999999 9999999999998210
Q ss_pred -------c---e--eee---------eee----ccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCC
Q psy17537 107 -------R---R--IQH---------LFF----IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADA 154 (773)
Q Consensus 107 -------~---~--~~~---------~f~----~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~ 154 (773)
+ . ... .|. ....+|||.+||++++|.+ ++|||+||+++|+|+|.|..
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 0 0 001 132 2346899999999999986 68999999999999999853
No 22
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.52 E-value=6.5e-15 Score=141.32 Aligned_cols=87 Identities=20% Similarity=0.357 Sum_probs=68.1
Q ss_pred cccEEEEEEcCcccccc--------ccCCCCeEec--CccEEEEEEeCCccc----------------------------
Q psy17537 65 SEVRFSFKVENIHNLKD--------TALSPPHYAR--NLPWKIMFMVKLLVR---------------------------- 106 (773)
Q Consensus 65 ~~~~~~w~I~~fs~l~~--------~~~S~~F~vg--g~~W~i~~yP~g~~~---------------------------- 106 (773)
..++|+|+|+|||.+++ .++|++|.+| ||+|+|.+||+|...
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 36899999999999874 5789999999 999999999998210
Q ss_pred -------cee--------eee---------eec-----cCCCcccccccCcccccCCCCCccccCcEEEEEEeecC
Q psy17537 107 -------RRI--------QHL---------FFI-----KENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQAD 153 (773)
Q Consensus 107 -------~~~--------~~~---------f~~-----~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~ 153 (773)
++. .+. |.. ...+|||.+||++++|. ++|||+||+++|+|+|.|+
T Consensus 83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~ 156 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTR 156 (160)
T ss_dssp EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC-
T ss_pred eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEe
Confidence 000 011 211 12279999999999996 6899999999999999986
No 23
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.52 E-value=6.1e-15 Score=164.16 Aligned_cols=100 Identities=28% Similarity=0.429 Sum_probs=81.8
Q ss_pred CCCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCCC---------ccHHHHHHHHHHHHHhcCC-CCcCh
Q psy17537 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDS---------NKSVALALQRVFHELQFSD-KPVGT 231 (773)
Q Consensus 162 ~~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~~---------~~~l~~~l~~l~~~l~~~~-~~~~~ 231 (773)
.+...+++||.|+||||||||+||+|+++|+||++++......... ..++..+|+.||..|+.+. .++.|
T Consensus 18 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 18 QQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp -CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred cccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 3456788999999999999999999999999999999876432211 4589999999999999887 67999
Q ss_pred HHHHHHcC--CCCCC-------CCCCCChhhhhhhhcCC
Q psy17537 232 KKLTKSFG--WETLD-------SFMQHDVQEFLRVCNGE 261 (773)
Q Consensus 232 ~~~~~~l~--~~~~~-------~~~QqDa~E~l~~~~~e 261 (773)
..++..+. .+.|. ++.||||||||..+++.
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~ 136 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHS 136 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHH
Confidence 99988775 34555 79999999999887653
No 24
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.51 E-value=5.5e-15 Score=163.94 Aligned_cols=97 Identities=21% Similarity=0.321 Sum_probs=81.1
Q ss_pred CCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCC--CC---CCccHHHHHHHHHHHHHhcCCCCcChHHHHHHcC
Q psy17537 165 HTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTE--SD---DSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG 239 (773)
Q Consensus 165 ~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~--~~---~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~l~ 239 (773)
..+++||.|+||||||||+||||+++++||++++..... .. ....++..+|+.||..|+.+..++.|..++.++.
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~ 90 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 90 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHH
Confidence 567899999999999999999999999999999987644 11 2356899999999999998878899999988875
Q ss_pred --CCCCC------CCCCCChhhhhhhhcCC
Q psy17537 240 --WETLD------SFMQHDVQEFLRVCNGE 261 (773)
Q Consensus 240 --~~~~~------~~~QqDa~E~l~~~~~e 261 (773)
.+.|. ++.||||||||..+++.
T Consensus 91 ~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~ 120 (404)
T 2ayn_A 91 MAFPQFAEKGEQGQYLQQDANECWIQMMRV 120 (404)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHH
T ss_pred HhCchhhccccCCCccccCHHHHHHHHHHH
Confidence 33444 68999999999987653
No 25
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.51 E-value=3.2e-15 Score=147.63 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=70.3
Q ss_pred cccEEEEEEcCcccccc--------ccCCCCeEec--CccEEEEEEeCCcc-----------------------------
Q psy17537 65 SEVRFSFKVENIHNLKD--------TALSPPHYAR--NLPWKIMFMVKLLV----------------------------- 105 (773)
Q Consensus 65 ~~~~~~w~I~~fs~l~~--------~~~S~~F~vg--g~~W~i~~yP~g~~----------------------------- 105 (773)
..++|+|+|+|||.+++ .++|++|.+| ||+|+|.+||||+.
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 57999999999999873 3779999999 99999999999921
Q ss_pred -----cc---e---ee---------eeeec----cCCCcccccccCcccccCCCCCccccCcEEEEEEeecCC
Q psy17537 106 -----RR---R---IQ---------HLFFI----KENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADA 154 (773)
Q Consensus 106 -----~~---~---~~---------~~f~~----~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~ 154 (773)
.+ . .. +.|.. .+.+|||.+||++++|.+ +|||+||+++|+|+|.|..
T Consensus 118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 00 0 00 22432 246899999999999964 6999999999999998754
No 26
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.50 E-value=6.4e-15 Score=142.60 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=69.5
Q ss_pred cccEEEEEEcCcccccc--------ccCCCCeE--ecCccEEEEEEeCCccc----------------------------
Q psy17537 65 SEVRFSFKVENIHNLKD--------TALSPPHY--ARNLPWKIMFMVKLLVR---------------------------- 106 (773)
Q Consensus 65 ~~~~~~w~I~~fs~l~~--------~~~S~~F~--vgg~~W~i~~yP~g~~~---------------------------- 106 (773)
..++|+|+|+|||.+++ .++||+|. +|||+|+|.+||+|...
T Consensus 17 ~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~~ 96 (168)
T 1d00_A 17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK 96 (168)
T ss_dssp SSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEEE
Confidence 57999999999999873 27799996 89999999999998210
Q ss_pred ------c---e--ee---------eeee----ccCCCcccccccCcccccCCCCCccccCcEEEEEEeecC
Q psy17537 107 ------R---R--IQ---------HLFF----IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQAD 153 (773)
Q Consensus 107 ------~---~--~~---------~~f~----~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~ 153 (773)
+ . .. +.|. ....+|||.+||++++|.++ +|||+||+++|+|+|.|.
T Consensus 97 ~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 97 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp EEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred EEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 0 0 00 1243 23568999999999999764 499999999999999874
No 27
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.50 E-value=1.4e-14 Score=160.12 Aligned_cols=97 Identities=25% Similarity=0.333 Sum_probs=81.2
Q ss_pred CCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCC-------CCCCCccHHHHHHHHHHHHHhcCC-CCcChHHHH
Q psy17537 164 KHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT-------ESDDSNKSVALALQRVFHELQFSD-KPVGTKKLT 235 (773)
Q Consensus 164 ~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~-------~~~~~~~~l~~~l~~l~~~l~~~~-~~~~~~~~~ 235 (773)
..+|++||.|+||||||||+||||+++++|+++++.... +.......+..++..++..|+.+. ..+.|..++
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 468999999999999999999999999999999986531 111234578889999999999776 468999998
Q ss_pred HHcC--CCCCCCCCCCChhhhhhhhcC
Q psy17537 236 KSFG--WETLDSFMQHDVQEFLRVCNG 260 (773)
Q Consensus 236 ~~l~--~~~~~~~~QqDa~E~l~~~~~ 260 (773)
.+++ .+.|.++.||||||||..+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd 164 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMD 164 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHH
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHH
Confidence 8876 568899999999999998764
No 28
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.47 E-value=9.5e-15 Score=148.11 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=70.5
Q ss_pred cccEEEEEEcCcccccc--------ccCCCCeEec--CccEEEEEEeCCccc----------------------------
Q psy17537 65 SEVRFSFKVENIHNLKD--------TALSPPHYAR--NLPWKIMFMVKLLVR---------------------------- 106 (773)
Q Consensus 65 ~~~~~~w~I~~fs~l~~--------~~~S~~F~vg--g~~W~i~~yP~g~~~---------------------------- 106 (773)
..++|+|+|+|||.+++ .++|++|.+| ||+|+|.+||||...
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~ 153 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 153 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEEE
Confidence 57999999999998873 5779999999 999999999999210
Q ss_pred ------ce------ee---------eeee----ccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCC
Q psy17537 107 ------RR------IQ---------HLFF----IKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADA 154 (773)
Q Consensus 107 ------~~------~~---------~~f~----~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~ 154 (773)
++ .. +.|. ..+.+|||++||++++|.+ +|||+||+++|+|+|.|..
T Consensus 154 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 154 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp EEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTT
T ss_pred EEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccc
Confidence 00 00 1232 1245899999999999964 8999999999999999864
No 29
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.43 E-value=3.6e-14 Score=151.65 Aligned_cols=89 Identities=21% Similarity=0.343 Sum_probs=71.8
Q ss_pred cccEEEEEEcCccccc----cccCCCCeEecCc---cEEEEEEeCCccc-----------------------------c-
Q psy17537 65 SEVRFSFKVENIHNLK----DTALSPPHYARNL---PWKIMFMVKLLVR-----------------------------R- 107 (773)
Q Consensus 65 ~~~~~~w~I~~fs~l~----~~~~S~~F~vgg~---~W~i~~yP~g~~~-----------------------------~- 107 (773)
..++|+|+|+|||.++ +.++||+|.+||| +|+|.+||+|... +
T Consensus 5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~~~~v~a~~~~~l~~~ 84 (312)
T 3hqi_A 5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNA 84 (312)
T ss_dssp EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECCC-CEEEEEEEEEECT
T ss_pred EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCCCCcEEEEEEEEEEeC
Confidence 3589999999999986 4577999999996 9999999998210 0
Q ss_pred ----------eeeeeeeccCCCcccccccCcccccCCCCCccccCcEEEEEEeecCC
Q psy17537 108 ----------RIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADA 154 (773)
Q Consensus 108 ----------~~~~~f~~~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~i~~~v~v~~ 154 (773)
...+.|. ...+|||.+||++++|.++++|||+||+++|+|+|.|..
T Consensus 85 ~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~ 140 (312)
T 3hqi_A 85 KGEETKAMESQRAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQ 140 (312)
T ss_dssp TSCEEEEEECSSCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEE
T ss_pred CCCcccccccCCceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEe
Confidence 1234455 346899999999999998899999999999999999873
No 30
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.4e-13 Score=164.65 Aligned_cols=101 Identities=20% Similarity=0.364 Sum_probs=83.3
Q ss_pred CCCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCC-----CCCCCccHHHHHHHHHHHHHhcCC----------
Q psy17537 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT-----ESDDSNKSVALALQRVFHELQFSD---------- 226 (773)
Q Consensus 162 ~~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~-----~~~~~~~~l~~~l~~l~~~l~~~~---------- 226 (773)
+...+|++||.|+||||||||+||+|+++++||++++.... ........+..+|++||..|+...
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~ 417 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGD 417 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC----------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccc
Confidence 33578999999999999999999999999999999985321 233456689999999999998532
Q ss_pred -----------CCcChHHHHHHcC--CCCCCCCCCCChhhhhhhhcCCC
Q psy17537 227 -----------KPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVCNGET 262 (773)
Q Consensus 227 -----------~~~~~~~~~~~l~--~~~~~~~~QqDa~E~l~~~~~e~ 262 (773)
..+.|..++..++ .+.|.++.||||||||..+++..
T Consensus 418 ~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L 466 (854)
T 3ihp_A 418 GERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMV 466 (854)
T ss_dssp -----------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHH
T ss_pred cccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHH
Confidence 3689999999887 46889999999999999876533
No 31
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.35 E-value=3.3e-13 Score=152.90 Aligned_cols=99 Identities=23% Similarity=0.347 Sum_probs=76.0
Q ss_pred CCCCcccceeeCCCceehHHHHHHHhccHHHHHHHhcCCC----CCCCCccHHHHHHHHHHHHHhcCCC----------C
Q psy17537 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT----ESDDSNKSVALALQRVFHELQFSDK----------P 228 (773)
Q Consensus 163 ~~~~g~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~----~~~~~~~~l~~~l~~l~~~l~~~~~----------~ 228 (773)
...+|++||.|+||||||||+||+|+++|+||++++.... ....+..++..+|..++..|+.... .
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~ 215 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTST 215 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CC
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccc
Confidence 3568999999999999999999999999999999986531 2223455789999999999986432 2
Q ss_pred cChHHHHHHc-----CCCCCCCCCCCChhhhhhhhcCC
Q psy17537 229 VGTKKLTKSF-----GWETLDSFMQHDVQEFLRVCNGE 261 (773)
Q Consensus 229 ~~~~~~~~~l-----~~~~~~~~~QqDa~E~l~~~~~e 261 (773)
+.+..+...+ ..+.|.++.||||||||..+++.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~ 253 (476)
T 3mhs_A 216 NRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQ 253 (476)
T ss_dssp CSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHH
Confidence 4444443332 15678999999999999877653
No 32
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.11 E-value=2.6e-11 Score=127.65 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=69.9
Q ss_pred ccceeeCCCceehHHHHHHHhccHHHHHHHhcCCCCCCC--CccHHHHHH-HHHHHHHhcCCCCcChHHHHHHcC-----
Q psy17537 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDD--SNKSVALAL-QRVFHELQFSDKPVGTKKLTKSFG----- 239 (773)
Q Consensus 168 ~~GL~NlGnTCy~Ns~LQ~L~~~~~fr~~~~~~~~~~~~--~~~~l~~~l-~~l~~~l~~~~~~~~~~~~~~~l~----- 239 (773)
.+||.|+||||||||.||||+.++++++.++........ ....+..+| ..+|..|.. .++.|..++..|+
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~pQ 86 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILEK 86 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhHH
Confidence 479999999999999999999999999999988654433 223688888 889999986 7788887777665
Q ss_pred --CCCCCCCCCCChhhhhhhhcCC
Q psy17537 240 --WETLDSFMQHDVQEFLRVCNGE 261 (773)
Q Consensus 240 --~~~~~~~~QqDa~E~l~~~~~e 261 (773)
...-.+++||||.|++..+...
T Consensus 87 fae~~G~~~~QQDaEE~~t~Ll~~ 110 (374)
T 2vhf_A 87 VEAASGFTSEEKDPEEFLNILFHH 110 (374)
T ss_dssp HC--------CCCHHHHHHHHHTT
T ss_pred HhcccCCCccccCHHHHHHHHHHH
Confidence 2222268999999999877653
No 33
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=98.42 E-value=6.4e-08 Score=91.82 Aligned_cols=88 Identities=57% Similarity=1.080 Sum_probs=76.2
Q ss_pred hhhhcCCCCCCCccccccchhhcCCCCCCCCCccccccceeeeecCCCcccccccccccCCCCCCccccCceEEEEEeec
Q psy17537 255 LRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQA 334 (773)
Q Consensus 255 l~~~~~e~~~~~ws~~~~~~L~l~nq~~~~~~~~~~i~~~F~~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v~~ 334 (773)
++.+..+..+..|++.+++.+.+++|..+..+..+...++|.....+|||++|+.+.+|.++.++|+.||++.+++++..
T Consensus 68 yL~~~~~~~~~~w~v~a~~~l~l~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V 147 (155)
T 2foj_A 68 FLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQA 147 (155)
T ss_dssp EEEESTTCCCSSCEEEEEEEEEECCSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEE
T ss_pred EEEeCCCCCCCCCEEEEEEEEEEEcCCCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEE
Confidence 33455555567899999999999999877656677788999887789999999999999999999999999999999999
Q ss_pred CCCCcccc
Q psy17537 335 DAPHGVSW 342 (773)
Q Consensus 335 ~~p~~~~~ 342 (773)
..|+|+.|
T Consensus 148 ~~~tG~~w 155 (155)
T 2foj_A 148 DAPHGVAW 155 (155)
T ss_dssp CCCBSSCC
T ss_pred eCcccccC
Confidence 99998877
No 34
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=97.14 E-value=0.00019 Score=81.51 Aligned_cols=90 Identities=21% Similarity=0.383 Sum_probs=66.4
Q ss_pred ccccccEEEEEEcCccccc----cccCCCCeE-ecCccEEEEEEeCCcc-------------------------------
Q psy17537 62 RARSEVRFSFKVENIHNLK----DTALSPPHY-ARNLPWKIMFMVKLLV------------------------------- 105 (773)
Q Consensus 62 ~~~~~~~~~w~I~~fs~l~----~~~~S~~F~-vgg~~W~i~~yP~g~~------------------------------- 105 (773)
...+...+.|+|.||+++. ..++||+|. -.||+++|.+||+|..
T Consensus 401 t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~ll 480 (592)
T 4gwm_A 401 SETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAHVTNAGIYFHLISGANDDQLQWPCPWQQATMTLL 480 (592)
T ss_dssp ESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCSSSEEEEEEEEECCTTGGGSCSSCCSEEEEEEEC
T ss_pred eeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCCCceEEEEEEEecCCCCCCccCCCCCCEEEEEEe
Confidence 3344567999999999875 457899994 4799999999998800
Q ss_pred ------cc--eeeeeeec--------------------------------cCCCcccccccCcccccCCCCCccccCcEE
Q psy17537 106 ------RR--RIQHLFFI--------------------------------KENDWGFSHFMTFSDLLDPDKGFIKDDSII 145 (773)
Q Consensus 106 ------~~--~~~~~f~~--------------------------------~~~~wG~~~fi~~~~l~~~~~g~l~~d~~~ 145 (773)
.+ .....|.. ...+|||+.||+.+.|. +..||++|.++
T Consensus 481 DQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~fiK~d~~~ 558 (592)
T 4gwm_A 481 DQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRDFIKGDDVY 558 (592)
T ss_dssp CCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STTSSBTTBEE
T ss_pred CCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--hcCcccCCeEE
Confidence 00 01112211 23458999999999995 67899999999
Q ss_pred EEEEeecC
Q psy17537 146 LEVCVQAD 153 (773)
Q Consensus 146 i~~~v~v~ 153 (773)
|-++|.-+
T Consensus 559 i~~~~eD~ 566 (592)
T 4gwm_A 559 ILLTVEDI 566 (592)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99998665
No 35
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=96.74 E-value=0.00023 Score=66.22 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=56.5
Q ss_pred CCccccccchhhcCCCCCCCCCc-cccccceeeeecCCCcccccccccccCCCCCCccccCceEEEEEeec
Q psy17537 265 SAWSCYASAELILVPQKPGVEPF-SRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQA 334 (773)
Q Consensus 265 ~~ws~~~~~~L~l~nq~~~~~~~-~~~i~~~F~~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v~~ 334 (773)
..|.+.+++.+.++||..+.... .....+.|. ...+|||++|+.+.+|.++..+|+.||++.++.++..
T Consensus 73 ~~w~v~a~f~l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V 142 (145)
T 3ivv_A 73 PKSEVRAKFKFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142 (145)
T ss_dssp SSSEEEEEEEEEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred CCCcEEEEEEEEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEE
Confidence 47999999999999998764332 223567886 4678999999999999888899999999999988763
No 36
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=96.58 E-value=0.00065 Score=65.50 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=56.8
Q ss_pred CCccccccchhhcCCCCCCCCCcccc-----ccceeee----ecCCCcccccccccccCCCCCCccccCceEEEEEeec
Q psy17537 265 SAWSCYASAELILVPQKPGVEPFSRR-----IQHLFFI----KENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQA 334 (773)
Q Consensus 265 ~~ws~~~~~~L~l~nq~~~~~~~~~~-----i~~~F~~----~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v~~ 334 (773)
..|.+.+++.+.+++|..+..+..+. ..+.|.. ...+|||.+|+.+.+|.++..+|+.||++.++..+..
T Consensus 94 l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 94 LQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp SCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred cCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence 47999999999999998765554432 3456753 4568999999999999988899999999999988853
No 37
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.08 E-value=0.058 Score=52.26 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=55.9
Q ss_pred cCCcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhcC
Q psy17537 342 WDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG 421 (773)
Q Consensus 342 ~~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l~ 421 (773)
|+.....|.+=|+-.-|+||+||++=+|-++... ++.++..+..+ ++...-.++-+.
T Consensus 5 f~~~~~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~---------------------~~~aw~~f~~G-d~~~fV~~~Ya~- 61 (211)
T 3mp2_A 5 FKTTNLNGKIILKQGDNNCWINACCYQLQAFDFF---------------------NNEAWEKFKKG-DVMDFVNLCYAA- 61 (211)
T ss_dssp CCEEEETTEEEECCCTTCHHHHHHHHHHTTCTTC---------------------CCHHHHHHTTT-CCHHHHHHHHHH-
T ss_pred CcceeECCEEEEEccCCCcHHHHHHHHHHhcChh---------------------HHHHHHHHhCC-ChHHHHHHHHHH-
Confidence 5555556677777788999999997666333221 44444444333 222222222222
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCc
Q psy17537 422 WETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNY 476 (773)
Q Consensus 422 ~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~ 476 (773)
.....++--||+++|..|+..+ =...+.....|. |+.
T Consensus 62 -~~~~~G~~gDa~~~L~~Ll~~~----------------~~a~~v~~~~C~-Cg~ 98 (211)
T 3mp2_A 62 -TTLARGHSGDAEYLLELMLNDY----------------STAKIVLAAKCG-CGE 98 (211)
T ss_dssp -HTCCTTSCCCHHHHHHHHHTTC----------------CCEEEEEEEEET-TEE
T ss_pred -cCCCCCCCcCHHHHHHHHHHhh----------------ccceEEEEEEEc-CCC
Confidence 2355678889999999998321 123455677887 876
No 38
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=96.00 E-value=0.0027 Score=60.40 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=57.3
Q ss_pred hhhhhhhcCCCCC-CCccccccchhhcCCCCCCCCCccccc-----cceee----eecCCCcccccccccccCCCCCCcc
Q psy17537 252 QEFLRVCNGETES-SAWSCYASAELILVPQKPGVEPFSRRI-----QHLFF----IKENDWGFSHFMTFSDLLDPDKGFI 321 (773)
Q Consensus 252 ~E~l~~~~~e~~~-~~ws~~~~~~L~l~nq~~~~~~~~~~i-----~~~F~----~~~~d~G~s~f~~~~dL~d~~~g~l 321 (773)
.-||.....+..+ ..|.+.+++.+.+++|... .+..... .+.|. ....+|||.+|+.+.+|.++ .||+
T Consensus 75 SlyL~l~~~~~~~~~~w~~~~~~~l~ll~q~~~-~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl 152 (168)
T 1d00_A 75 SLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNR-EHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYV 152 (168)
T ss_dssp EEEEEEECCTTGGGSCSSCCCCEEEEECCTTSS-CCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSS
T ss_pred EEEEEEecCCCCccCCCceEEEEEEEEECCCCC-ccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCce
Confidence 3444443434433 6899999999999998865 3333322 12443 24568999999999999875 4999
Q ss_pred ccCceEEEEEeec
Q psy17537 322 KDDSIILEVCVQA 334 (773)
Q Consensus 322 ~ndsi~~e~~v~~ 334 (773)
.||++.++..+..
T Consensus 153 ~dD~l~I~~~V~v 165 (168)
T 1d00_A 153 RDDAIFIKAIVDL 165 (168)
T ss_dssp BTTEEEEEEEECC
T ss_pred eCCEEEEEEEEEe
Confidence 9999999988763
No 39
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=95.89 E-value=0.002 Score=62.90 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=57.2
Q ss_pred hhhhhhhcCCCCC-CCccccccchhhcCCCCCCCCCcccccc-----ceee----eecCCCcccccccccccCCCCCCcc
Q psy17537 252 QEFLRVCNGETES-SAWSCYASAELILVPQKPGVEPFSRRIQ-----HLFF----IKENDWGFSHFMTFSDLLDPDKGFI 321 (773)
Q Consensus 252 ~E~l~~~~~e~~~-~~ws~~~~~~L~l~nq~~~~~~~~~~i~-----~~F~----~~~~d~G~s~f~~~~dL~d~~~g~l 321 (773)
.-||.....+..+ ..|.+.+++.+.+++|..+ .+..+.+. +.|. ....+|||.+|+.+.+|.+ ..||+
T Consensus 99 SlyL~l~~~~~~~~~~W~~~a~~~l~lldq~~~-~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl 176 (192)
T 1ca9_A 99 SLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNR-EHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYV 176 (192)
T ss_dssp EEEEEEECCTTGGGSCSSCCCCEEEEECCTTSS-CCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSC
T ss_pred EEEEEEccCCCCCcCCCceEEEEEEEEECCCCC-ceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCE
Confidence 3444434444443 6899999999999998876 33332221 2243 2356899999999999986 57999
Q ss_pred ccCceEEEEEeec
Q psy17537 322 KDDSIILEVCVQA 334 (773)
Q Consensus 322 ~ndsi~~e~~v~~ 334 (773)
.||++.++..+..
T Consensus 177 ~dD~l~I~~~V~V 189 (192)
T 1ca9_A 177 RDDAIFIKAIVDL 189 (192)
T ss_dssp BTTEEEEEEEECC
T ss_pred eCCEEEEEEEEEe
Confidence 9999999988764
No 40
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=95.81 E-value=0.002 Score=62.86 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=58.7
Q ss_pred hhhhhhhcCCCC-CCCccccccchhhcCCCCCCCCCcccccc-----ceeee----ecCCCcccccccccccCCCCCCcc
Q psy17537 252 QEFLRVCNGETE-SSAWSCYASAELILVPQKPGVEPFSRRIQ-----HLFFI----KENDWGFSHFMTFSDLLDPDKGFI 321 (773)
Q Consensus 252 ~E~l~~~~~e~~-~~~ws~~~~~~L~l~nq~~~~~~~~~~i~-----~~F~~----~~~d~G~s~f~~~~dL~d~~~g~l 321 (773)
.-||.++..+.. ...|.+.+++.+.+++|.....++.+.+. ++|.. .+.+|||.+|+.+.+|.+ .||+
T Consensus 96 SlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl 173 (192)
T 2gkw_A 96 SLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYI 173 (192)
T ss_dssp EEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSC
T ss_pred EEEEEEecCCCCccCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCe
Confidence 344444444443 24799999999999999877555443332 56743 246899999999999876 4899
Q ss_pred ccCceEEEEEeec
Q psy17537 322 KDDSIILEVCVQA 334 (773)
Q Consensus 322 ~ndsi~~e~~v~~ 334 (773)
.||++.+...+..
T Consensus 174 ~dD~l~I~~~V~v 186 (192)
T 2gkw_A 174 KDDTIFIKVIVDT 186 (192)
T ss_dssp BTTEEEEEEEECC
T ss_pred eCCEEEEEEEEEc
Confidence 9999999988754
No 41
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=95.58 E-value=0.0023 Score=62.68 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=58.0
Q ss_pred hhhhhhhhcCCCC-CCCccccccchhhcCCCCCCCCCcccc---------ccceeeeecCCCcccccccccccCCCCCCc
Q psy17537 251 VQEFLRVCNGETE-SSAWSCYASAELILVPQKPGVEPFSRR---------IQHLFFIKENDWGFSHFMTFSDLLDPDKGF 320 (773)
Q Consensus 251 a~E~l~~~~~e~~-~~~ws~~~~~~L~l~nq~~~~~~~~~~---------i~~~F~~~~~d~G~s~f~~~~dL~d~~~g~ 320 (773)
..-||.++..+.. ...|.+.+++.+.+++|.....+..+. .+..|...+.+|||.+|+.+.+|.+ .||
T Consensus 95 lSlyL~l~~g~~D~~l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gy 172 (198)
T 4ghu_A 95 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTY 172 (198)
T ss_dssp EEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTS
T ss_pred EEEEEEecCCccCCCCCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCC
Confidence 3345544444432 247999999999999998654444322 1222444567899999999988874 789
Q ss_pred cccCceEEEEEeec
Q psy17537 321 IKDDSIILEVCVQA 334 (773)
Q Consensus 321 l~ndsi~~e~~v~~ 334 (773)
+.||++.+...+..
T Consensus 173 L~dD~l~I~~~V~v 186 (198)
T 4ghu_A 173 IKDDTIFIKVIVDT 186 (198)
T ss_dssp CBTTBEEEEEEECC
T ss_pred eeCCEEEEEEEEEe
Confidence 99999999988863
No 42
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=95.35 E-value=0.0064 Score=60.96 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=58.2
Q ss_pred hhhhhhhcCCCC-CCCccccccchhhcCCCCCCCCCcccc-----ccceee----eecCCCcccccccccccCCCCCCcc
Q psy17537 252 QEFLRVCNGETE-SSAWSCYASAELILVPQKPGVEPFSRR-----IQHLFF----IKENDWGFSHFMTFSDLLDPDKGFI 321 (773)
Q Consensus 252 ~E~l~~~~~e~~-~~~ws~~~~~~L~l~nq~~~~~~~~~~-----i~~~F~----~~~~d~G~s~f~~~~dL~d~~~g~l 321 (773)
.-||.++..+.. ...|.+.+++.+.+++|.....++.+. ..+.|. ....+|||.+|+.+.+|.+ .||+
T Consensus 132 SlyL~l~~~~~d~~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL 209 (228)
T 1flk_A 132 SLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYI 209 (228)
T ss_dssp EEEECCBCCTTTTSSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTC
T ss_pred EEEEEEecCCccccCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCc
Confidence 344444444443 347999999999999998765444332 123464 2345899999999999976 7899
Q ss_pred ccCceEEEEEeec
Q psy17537 322 KDDSIILEVCVQA 334 (773)
Q Consensus 322 ~ndsi~~e~~v~~ 334 (773)
.||++.+...+..
T Consensus 210 ~dD~l~I~~~V~v 222 (228)
T 1flk_A 210 KDDTIFIKVIVDT 222 (228)
T ss_dssp CSSEEEEEEECCC
T ss_pred cCCEEEEEEEEEc
Confidence 9999999988764
No 43
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=95.23 E-value=0.25 Score=50.97 Aligned_cols=105 Identities=21% Similarity=0.281 Sum_probs=58.8
Q ss_pred ccCCcccccccccccCccccchhhHHHHHhccHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhhc
Q psy17537 341 SWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSF 420 (773)
Q Consensus 341 ~~~~~~~~g~~GL~N~GntCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~l~~~L~~lf~~l~~~~~~~~~~~l~~~l 420 (773)
.|+.....|++=|+=.-|+||+||++=+|-++.. . --.-+|+.++..+..++. ...-.++-+.
T Consensus 93 ~w~~~~~~G~~vLkq~dNNCwVNaa~l~LQ~~~~----------~------F~~~~l~~aw~~f~~Gd~-~~FVa~~Ya~ 155 (315)
T 2fe8_A 93 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEV----------K------FNAPALQEAYYRARAGDA-ANFCALILAY 155 (315)
T ss_dssp TSCCCEETTEECCCCCTTTHHHHHHHHHHHTSCC----------C------BSSHHHHHHHHHHHHTCC-HHHHHHHHHH
T ss_pred CCceEEECCEEEEeecCCccHHHHHHHHHHhcCC----------c------cCCHHHHHHHHHHhCCCh-HHHHHHHHHh
Confidence 4555556667777777899999998766522211 0 001345556655544432 2222222222
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCccccccceeEEEEEEeccCCcee
Q psy17537 421 GWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTS 478 (773)
Q Consensus 421 ~~~~~~~~~QqDA~Efl~~Ll~~L~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s 478 (773)
. ....|+--||+++|..|+... .+. .......+.|..|+...
T Consensus 156 ~--~~~~G~~gDa~~~L~~Ll~~~-----------~v~---ta~~~~~~~C~~Cg~~~ 197 (315)
T 2fe8_A 156 S--NKTVGELGDVRETMTHLLQHA-----------NLE---SAKRVLNVVCKHCGQKT 197 (315)
T ss_dssp T--TCCTTSCCCHHHHHHHHHTTB-----------CCT---TCEEEEEEEETTTEEEE
T ss_pred c--CCCCCCCccHHHHHHHHHhcC-----------Cee---eEEEEEeeecCCCCCCe
Confidence 2 244678889999999994432 111 12223346899998543
No 44
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=94.17 E-value=0.0093 Score=62.78 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=53.8
Q ss_pred CCccccccchhhcCCCCCCCCCccc-cccceeeeecCCCcccccccccccCCCCCCccccCceEEEEEee
Q psy17537 265 SAWSCYASAELILVPQKPGVEPFSR-RIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 333 (773)
Q Consensus 265 ~~ws~~~~~~L~l~nq~~~~~~~~~-~i~~~F~~~~~d~G~s~f~~~~dL~d~~~g~l~ndsi~~e~~v~ 333 (773)
..|.+.+++.+.+++|..+...... ...+.|.. ..+|||++|+.+.+|.++..||+.||++.++.++.
T Consensus 69 ~~~~v~a~~~~~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~ 137 (312)
T 3hqi_A 69 PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVS 137 (312)
T ss_dssp CC-CEEEEEEEEEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEE
T ss_pred CCCcEEEEEEEEEEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEE
Confidence 4789999999999998865433222 34567763 45899999999999998889999999999888776
No 45
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=93.75 E-value=0.031 Score=52.53 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=52.6
Q ss_pred hhhhhhhcCCCC-CCCccccccchhhcCCCCCCCC--Cccccc-----cceeee-----ecCCCcccccccccccCCCCC
Q psy17537 252 QEFLRVCNGETE-SSAWSCYASAELILVPQKPGVE--PFSRRI-----QHLFFI-----KENDWGFSHFMTFSDLLDPDK 318 (773)
Q Consensus 252 ~E~l~~~~~e~~-~~~ws~~~~~~L~l~nq~~~~~--~~~~~i-----~~~F~~-----~~~d~G~s~f~~~~dL~d~~~ 318 (773)
.-||.++..+.. ...|.+.+++.+.+++|..... +..+.+ ...|.. +..+|||.+|+.+.+|. ..
T Consensus 62 SlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~ 139 (160)
T 1lb6_A 62 SLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QR 139 (160)
T ss_dssp EEEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TS
T ss_pred EEEEEEeecCCCccCCCceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hC
Confidence 344544444443 3469999999999999875421 111111 011221 12279999999999987 36
Q ss_pred CccccCceEEEEEeec
Q psy17537 319 GFIKDDSIILEVCVQA 334 (773)
Q Consensus 319 g~l~ndsi~~e~~v~~ 334 (773)
||+.||++.++..+..
T Consensus 140 ~yl~dD~l~I~~~V~v 155 (160)
T 1lb6_A 140 TFIKDDTLLVRCEVST 155 (160)
T ss_dssp CCCBTTBEEEEEEEEC
T ss_pred CCccCCEEEEEEEEEE
Confidence 8999999999887763
No 46
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=66.43 E-value=2.2 Score=37.89 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.0
Q ss_pred ccccccccCccccchhhHHHHHh
Q psy17537 348 TGYVGLKNQGATCYMNSLLQTLY 370 (773)
Q Consensus 348 ~g~~GL~N~GntCY~NSvLQ~L~ 370 (773)
..+.|+.|--++|++|++||+..
T Consensus 11 k~fys~pN~hdncWLNtilQLfr 33 (167)
T 1qmy_A 11 KTFYSRPNNHDNAWLNAILQLFR 33 (167)
T ss_dssp EECCCCCCSSSCHHHHHHHHHHH
T ss_pred cccccCCCCCcchHHHHHHHHHH
Confidence 34689999999999999999874
No 47
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=28.63 E-value=20 Score=31.90 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=25.3
Q ss_pred cccceeeCCCceehHHHHHHHhc-cHHHHHHHhcC
Q psy17537 167 GYVGLKNQGATCYMNSLLQTLYF-TNQLRKAVYKM 200 (773)
Q Consensus 167 g~~GL~NlGnTCy~Ns~LQ~L~~-~~~fr~~~~~~ 200 (773)
.+.|+.|-.++|.+|++||..-. -.+|.++.+.-
T Consensus 12 ~fys~pN~hdncWLNtilQLfryvdepfFd~~y~s 46 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYSS 46 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHTC
T ss_pred ccccCCCCCcchHHHHHHHHHHHcCccchhhccCC
Confidence 46789999999999999998743 33455666643
Done!