RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17537
(773 letters)
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 431 bits (1110), Expect = e-146
Identities = 174/379 (45%), Positives = 218/379 (57%), Gaps = 67/379 (17%)
Query: 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM-PTESDDSNKSVALALQRVFHELQFS 407
GYVGLKNQGATCYMNSLLQ LY T + R AVY + PTE DD NKSV LALQR+F LQ S
Sbjct: 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLS 60
Query: 408 DKPVGTKKL---TKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGK 464
+ PV T +L T+SFGW++L++F QHDVQEF RVL DKLE K+KGT EG + LF GK
Sbjct: 61 ESPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGK 120
Query: 465 MISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQ 524
++++I CK+ + S R E F D+Q+ VKGKK++ ES Y++ E LEGDNKY G +
Sbjct: 121 LVNYIICKECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKK 180
Query: 525 -DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKE------- 576
DAEKGV F+ LPPVL L L RF++D T +K NDRFEF ++++ + ++
Sbjct: 181 VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEG 240
Query: 577 ----KGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLY 632
K Y LH VLVHSGD HGGHY YI + D K
Sbjct: 241 DSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGK-------------------- 280
Query: 633 EPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDE----DSG 688
W KF+DDVV+ ++A FGG + DSG
Sbjct: 281 --------------------------WYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSG 314
Query: 689 LTV-KHSTNAYMLVYIRES 706
K +TNAYML Y R+S
Sbjct: 315 PRAFKRTTNAYMLFYERKS 333
Score = 150 bits (380), Expect = 6e-40
Identities = 64/95 (67%), Positives = 74/95 (77%), Gaps = 4/95 (4%)
Query: 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM-PTESDDSNKSVALALQRVFHELQFS 225
GYVGLKNQGATCYMNSLLQ LY T + R AVY + PTE DD NKSV LALQR+F LQ S
Sbjct: 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLS 60
Query: 226 DKPVGTKKL---TKSFGWETLDSFMQHDVQEFLRV 257
+ PV T +L T+SFGW++L++F QHDVQEF RV
Sbjct: 61 ESPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRV 95
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 422 bits (1087), Expect = e-133
Identities = 210/481 (43%), Positives = 284/481 (59%), Gaps = 67/481 (13%)
Query: 261 ETESSAWSCYAS-AELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKG 319
ET + C A A I P+ P +E + + H F ++ DWGF++F+ + L++P G
Sbjct: 94 ETGGKYYDCCAQFAFDISNPKYPTIE-YINKSHHRFSMESTDWGFTNFIDLNKLIEPSPG 152
Query: 320 ---FIKDDSIILEVCVQA-DAPHGVSW------DSKKHTGYVGLKNQGATCYMNSLLQTL 369
F+++ ++++ V V+ P GV W +SKK TGYVGL+NQGATCYMNSLLQ+L
Sbjct: 153 RPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGYVGLRNQGATCYMNSLLQSL 212
Query: 370 YFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFM 429
+F + RK VY +PT+ SVALALQR+F+ LQ ++PV T +LT+SFGW++ DSFM
Sbjct: 213 FFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFGWDSDDSFM 272
Query: 430 QHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQL 489
QHD+QEF RVL D LE M+GT VE + +F GKM S+IKC VNY S+R E F+DIQL
Sbjct: 273 QHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQL 332
Query: 490 NVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYD 549
NVKG K++ ESF+ YI+ E L+GDN+Y+A HGLQDA+KGV FE+LPPVLHL L RF+YD
Sbjct: 333 NVKGMKNLQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYD 392
Query: 550 PVTDCSVKFNDRFEFYDRIELDDFL----KEKGPTPATYILHAVLVHSGDNHGGHYVVYI 605
D VK NDR+EF I+L FL + + A Y+L+ VLVHSGD H GHY +
Sbjct: 393 FERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALL 452
Query: 606 NPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDD 665
P+ D W KFDD
Sbjct: 453 KPEKDG----------------------------------------------RWYKFDDT 466
Query: 666 VVSKCSKDEAVAHNFGGN---DED--SGLTVKHSTNAYMLVYIRESELANVLEDVTERDI 720
V++ ++ E + NFGG+ + +K +AYMLVY+R+S L ++L V DI
Sbjct: 467 RVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLDDLLNPVAAVDI 526
Query: 721 P 721
P
Sbjct: 527 P 527
Score = 184 bits (468), Expect = 3e-48
Identities = 91/258 (35%), Positives = 133/258 (51%), Gaps = 53/258 (20%)
Query: 53 EMNDADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVK---------- 102
+ D + E+ F++KV+ L SPP WKI+ +
Sbjct: 25 ILPQFDPDVEELLEMSFTWKVKRWSELAKKVESPPFSVGGHTWKIILFPQGNNQCNVSVY 84
Query: 103 ---------------------------------LLVRRRIQHLFFIKENDWGFSHFMTFS 129
+ + H F ++ DWGF++F+ +
Sbjct: 85 LEYEPQELEETGGKYYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLN 144
Query: 130 DLLDPDKG---FIKDDSIILEVCVQA-DAPHGVSW------DSKKHTGYVGLKNQGATCY 179
L++P G F+++ ++++ V V+ P GV W +SKK TGYVGL+NQGATCY
Sbjct: 145 KLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGYVGLRNQGATCY 204
Query: 180 MNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFG 239
MNSLLQ+L+F + RK VY +PT+ SVALALQR+F+ LQ ++PV T +LT+SFG
Sbjct: 205 MNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFG 264
Query: 240 WETLDSFMQHDVQEFLRV 257
W++ DSFMQHD+QEF RV
Sbjct: 265 WDSDDSFMQHDIQEFNRV 282
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 238 bits (609), Expect = 2e-72
Identities = 106/377 (28%), Positives = 152/377 (40%), Gaps = 86/377 (22%)
Query: 348 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES---DDSNKSVALALQRVFHEL 404
G GL N G TCYMNS+LQ L+ LR + + +E S + AL +FH L
Sbjct: 1 EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHAL 60
Query: 405 Q---FSDKPVGTKKLTKSFGWETLD--SFMQHDVQEFLRVLLDKLEIKMKGT-------- 451
Q + V K ++ G + +MQ D EFL LLD+L +
Sbjct: 61 QSPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHAA 120
Query: 452 CVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKK--DILESFKDYIEPEV 509
E + KLF+G++ S +KC K SS E F D+ L ++ L + E+
Sbjct: 121 ENESLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSVLKLLTGNFLKLEEL 180
Query: 510 LEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIE 569
+ + Y G Q+A K + LPPVL +HL RF D + K +DR EF ++
Sbjct: 181 EKEEKYYCPKCGGKQNAIKKLDISRLPPVLIIHLKRF-EDFNRETEKKISDRVEFPLELD 239
Query: 570 LDDFL---KEKGPTPATYILHAVLVHSGDN-HGGHYVVYINPKGDNKSTALPPFDKDAEV 625
L +L E P Y L AV+VHSG + GGHY+ YI + NK
Sbjct: 240 LSSYLEEELEGEEPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNK------------- 286
Query: 626 LFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDE 685
W KFDD+ VS +++E +
Sbjct: 287 ---------------------------------WVKFDDEKVSVVTEEEVL--------- 304
Query: 686 DSGLTVKHSTNAYMLVY 702
++AY+L Y
Sbjct: 305 --------RSSAYILFY 313
Score = 95.6 bits (238), Expect = 2e-21
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTES---DDSNKSVALALQRVFHEL 222
G GL N G TCYMNS+LQ L+ LR + + +E S + AL +FH L
Sbjct: 1 EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHAL 60
Query: 223 Q---FSDKPVGTKKLTKSFGWETLD--SFMQHDVQEFLR 256
Q + V K ++ G + +MQ D EFL
Sbjct: 61 QSPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLL 99
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 176 bits (449), Expect = 2e-50
Identities = 86/371 (23%), Positives = 127/371 (34%), Gaps = 135/371 (36%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 411
GL N G TCY+NS+ LQ +F
Sbjct: 1 GLNNLGNTCYLNSV-------------------------------LQALFS--------- 20
Query: 412 GTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEG--------TVPKLFEG 463
Q D EFL LLDKL ++K + + LF G
Sbjct: 21 -----------------EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGG 63
Query: 464 KMISFIKCKKVNYTSSRAETFYDIQLNV----KGKKDILESFKDYIEPEVLEGDNKYDAG 519
K+ S I C + + S E + L + + + + + + + E+LEGDN Y
Sbjct: 64 KLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCE 123
Query: 520 VHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGP 579
Q+A K + + LPPVL +HL RF ++ K N + F ++L +L E
Sbjct: 124 KKKKQEATKRLKIKKLPPVLIIHLKRFSFNE-DGTKEKLNTKVSFPLELDLSPYLSEGEK 182
Query: 580 ------TPATYILHAVLVHSGDN-HGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLY 632
Y L AV+VHSG + GHYV Y+ D K
Sbjct: 183 DSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGK-------------------- 222
Query: 633 EPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVK 692
W KF+DD V++ S++E +
Sbjct: 223 --------------------------WYKFNDDKVTEVSEEEVLEFGS------------ 244
Query: 693 HSTNAYMLVYI 703
S++AY+L Y
Sbjct: 245 LSSSAYILFYE 255
Score = 45.9 bits (109), Expect = 3e-05
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQ 192
GL N G TCY+NS+LQ L+ Q
Sbjct: 1 GLNNLGNTCYLNSVLQALFSEQQ 23
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 172 bits (439), Expect = 3e-48
Identities = 109/378 (28%), Positives = 160/378 (42%), Gaps = 82/378 (21%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALA-----------LQRV 400
GLKN GATCY+NS LQ + + RKAVY+ + D K++ LQ +
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60
Query: 401 FHELQFSDK----PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKM---KGTCV 453
F +LQF ++ P G K+ G LD+ Q D QEF ++ L LE K+ K +
Sbjct: 61 FAQLQFGNRSVVDPSG---FVKALG---LDTGQQQDAQEFSKLFLSLLEAKLSKSKNPDL 114
Query: 454 EGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGD 513
+ V LF G+ +C K SS FY+++L +KG K + E ++++ E L GD
Sbjct: 115 KNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGD 174
Query: 514 NKYDAG-VHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDD 572
N+Y + DA + + LPP L+ L+RF +D T K N F + +++ +
Sbjct: 175 NQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGE 234
Query: 573 FLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKL 631
+L E Y L VL+H G + + GHY+ +I KD
Sbjct: 235 YLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHI---------------KD--------- 270
Query: 632 YEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSK-------CSKDEAVAHNFGGND 684
E GE W KF+D+ V + E A
Sbjct: 271 -------------------EQTGE---WYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEI 308
Query: 685 EDSGLTVKHSTNAYMLVY 702
+ G S AYMLVY
Sbjct: 309 K-KGTHS--SRTAYMLVY 323
Score = 67.1 bits (164), Expect = 6e-12
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 21/101 (20%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALA-----------LQRV 218
GLKN GATCY+NS LQ + + RKAVY+ + D K++ LQ +
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60
Query: 219 FHELQFSDK----PVGTKKLTKSFGWETLDSFMQHDVQEFL 255
F +LQF ++ P G K+ G LD+ Q D QEF
Sbjct: 61 FAQLQFGNRSVVDPSG---FVKALG---LDTGQQQDAQEFS 95
>gnl|CDD|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific
protease (HAUSP, also known as USP7) family, N-terminal
MATH (TRAF-like) domain; composed of proteins similar to
human HAUSP, an enzyme that specifically catalyzes the
deubiquitylation of p53 and MDM2, hence playing an
important role in the p53-MDM2 pathway. It contains an
N-terminal TRAF-like domain and a C-terminal catalytic
protease (C19 family) domain. The tumor suppressor p53
protein is a transcription factor that responds to many
cellular stress signals and is regulated primarily
through ubiquitylation and subsequent degradation. MDM2
is a RING-finger E3 ubiquitin ligase that promotes p53
ubiquitinylation. p53 and MDM2 bind to the same site in
the N-terminal TRAF-like domain of HAUSP in a mutually
exclusive manner. HAUSP also interacts with the
Epstein-Barr nuclear antigen 1 (EBNA1) protein of the
Epstein-Barr virus (EBV), which efficiently immortalizes
infected cells predisposing the host to a variety of
cancers. EBNA1 plays several important roles in EBV
latent infection and cellular transformation. It binds
the same pocket as p53 in the HAUSP TRAF-like domain.
Through interactions with p53, MDM2 and EBNA1, HAUSP
plays a role in cell proliferation, apoptosis and
EBV-mediated immortalization.
Length = 137
Score = 140 bits (355), Expect = 5e-39
Identities = 57/110 (51%), Positives = 73/110 (66%), Gaps = 14/110 (12%)
Query: 230 GTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESSAWSCYASAELILVPQKPGVEPFSR 289
KS G+ F+Q CN E++S++WSC+A A L ++ K FSR
Sbjct: 42 DRNPHQKSVGF-----FLQ---------CNAESDSTSWSCHAQAVLRIINYKDDEPSFSR 87
Query: 290 RIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHG 339
RI HLFF KENDWGFS+FMT+S++ DP+KGFI+DD+I LEV VQADAPHG
Sbjct: 88 RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADAPHG 137
Score = 125 bits (315), Expect = 1e-33
Identities = 60/137 (43%), Positives = 74/137 (54%), Gaps = 44/137 (32%)
Query: 65 SEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFM------------------------ 100
SE FSF VE L ++ LSPP + RNLPWKIM M
Sbjct: 1 SEATFSFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES 60
Query: 101 ------------VKLL--------VRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIK 140
++++ RRI HLFF KENDWGFS+FMT+S++ DP+KGFI+
Sbjct: 61 DSTSWSCHAQAVLRIINYKDDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIE 120
Query: 141 DDSIILEVCVQADAPHG 157
DD+I LEV VQADAPHG
Sbjct: 121 DDTITLEVYVQADAPHG 137
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 135 bits (342), Expect = 3e-35
Identities = 77/280 (27%), Positives = 121/280 (43%), Gaps = 38/280 (13%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVAL-----ALQRVFHELQF 406
GL+N G TC++NS+LQ L T L A Y + + + AL+
Sbjct: 3 GLQNLGNTCFLNSVLQCLTHTPPL--ANY-LLSREHSKDCCNEGFCMMCALEAHVERALA 59
Query: 407 SDKPVGTKKLT----KSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVP---- 458
S P ++ K + Q D EFLR LLD ++ C++
Sbjct: 60 SSGPGSAPRIFSSNLKQI-SKHFRIGRQEDAHEFLRYLLDAMQK----ACLDRFKKLKAV 114
Query: 459 -----------KLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEP 507
++F G + S +KC + S+ + F D+ L++KG + ++ + + +P
Sbjct: 115 DPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKP 174
Query: 508 EVLEGDNKYD-AGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYD 566
E L+G+NKY A K +T P VL +HL RF K N + F +
Sbjct: 175 EQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFR----GGKINKQISFPE 230
Query: 567 RIELDDFLKEKGPTPATYILHAVLVHSG-DNHGGHYVVYI 605
++L ++ + P Y L+AVLVHSG H GHY Y+
Sbjct: 231 TLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYV 270
Score = 39.6 bits (93), Expect = 0.004
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVAL-----ALQRVFHELQF 224
GL+N G TC++NS+LQ L T L A Y + + + AL+
Sbjct: 3 GLQNLGNTCFLNSVLQCLTHTPPL--ANY-LLSREHSKDCCNEGFCMMCALEAHVERALA 59
Query: 225 SDKPVGTKKL----TKSFGWETLDSFMQHDVQEFLR 256
S P ++ K + Q D EFLR
Sbjct: 60 SSGPGSAPRIFSSNLKQI-SKHFRIGRQEDAHEFLR 94
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 122 bits (308), Expect = 6e-31
Identities = 75/282 (26%), Positives = 110/282 (39%), Gaps = 51/282 (18%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 411
GL N G TC+ N+++Q L T LR+ + + P E + QF
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSETPKE--------LFSQVCRKAP-QFKG--- 48
Query: 412 GTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKC 471
+ Q D E LR LLD L + +F G++ S I C
Sbjct: 49 ----------------YQQQDSHELLRYLLDGLRT---------FIDSIFGGELTSTIMC 83
Query: 472 KKVNYTSSRAETFYDIQLNV----KGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAE 527
+ S E F D+ L K + I K + E E+LEG+NK+ A+
Sbjct: 84 ESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKF--ACENCTKAK 141
Query: 528 KGVTFENLPPVLHLHLMRFQYDPVTDCSV-KFNDRFEFYDRIELDDFLKEKGPTPAT--- 583
K LPPVL +HL RFQ ++ K + F + ++L F K +
Sbjct: 142 KQYLISKLPPVLVIHLKRFQQPR--SANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSS 199
Query: 584 --YILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDA 623
Y L+ V+ HSG GHYV Y+ + + + K A
Sbjct: 200 VLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPA 241
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 28/87 (32%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 229
GL N G TC+ N+++Q L T LR+ + + P E + QF
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSETPKE--------LFSQVCRKAP-QFKG--- 48
Query: 230 GTKKLTKSFGWETLDSFMQHDVQEFLR 256
+ Q D E LR
Sbjct: 49 ----------------YQQQDSHELLR 59
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 122 bits (309), Expect = 1e-30
Identities = 101/377 (26%), Positives = 142/377 (37%), Gaps = 77/377 (20%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 411
GL N G TCYMNS+LQ L+ R+ V + ++SV LQ + L + +
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQRRA 60
Query: 412 G---TKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISF 468
L S Q D E+LR LLD+L T +E K+F GK+ +
Sbjct: 61 EAPPDYFLEASRPPWFTPGS-QQDCSEYLRYLLDRLH-----TLIE----KMFGGKLSTT 110
Query: 469 IKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDA-GVHGLQDAE 527
I+C N TS+R E F D+ L+ +D+L F + PE L GDN+Y LQDAE
Sbjct: 111 IRCLNCNSTSARTERFRDLDLSFPSVQDLLNYF---LSPEKLTGDNQYYCEKCASLQDAE 167
Query: 528 KGVTFENLPPVLHLHLMRFQYDPVT--------------DCSVKFNDRFEFYDRIELDDF 573
K + P L L L+RF YD T S+ + +
Sbjct: 168 KEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKK- 226
Query: 574 LKEKGP------TPATYILHAVLVHSG-DNHGGHYVVYI-NPKGDNKSTALPPFDKDAEV 625
+E G Y L+AV+VHSG + GHY Y + + + P KDAE
Sbjct: 227 EEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEE 286
Query: 626 LFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDE 685
K W F+D V+ S +
Sbjct: 287 NDESK---------------------------NWYLFNDSRVTFSSFESV---------- 309
Query: 686 DSGLTVKHSTNAYMLVY 702
+ + Y+L Y
Sbjct: 310 QNVTSRFPKDTPYILFY 326
Score = 43.2 bits (102), Expect = 3e-04
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 229
GL N G TCYMNS+LQ L+ R+ V + ++SV LQ + L + +
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQRRA 60
Query: 230 G---TKKLTKSFGWETLDSFMQHDVQEFLRV 257
L S Q D E+LR
Sbjct: 61 EAPPDYFLEASRPPWFTPGS-QQDCSEYLRY 90
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 114 bits (288), Expect = 4e-28
Identities = 98/380 (25%), Positives = 138/380 (36%), Gaps = 110/380 (28%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 411
GL+N G TCY NS+LQ LYF N L L+ +F + K
Sbjct: 1 GLENFGNTCYCNSVLQALYFENLLT-------------------CLKDLFESISEQKKRT 41
Query: 412 GT-------KKLTKSFGWETLDSFMQHDVQEFLRVLLDKL---------EIKMKGTCVEG 455
G +L + E D++M D EFL LL+++ K
Sbjct: 42 GVISPKKFITRLKREN--ELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNN 99
Query: 456 T--------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEP 507
V ++F+G + + +C SSR ETF D+ ++V+ I + +
Sbjct: 100 NNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTSITSCLRQFSAT 159
Query: 508 EVLEGDNKYDAGV-HGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEF-- 564
E L G NK+ LQ+AEK + + LP +L LHL RF+YD + +K R F
Sbjct: 160 ETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL 219
Query: 565 YDRIELDDFLKEKGPTPATYILHAVLVH--SGDNHGGHYVVYINPKGDNKSTALPPFDKD 622
R+ E Y L AV+VH G NH GHYV + KS
Sbjct: 220 ELRLFNTTDDAENPDR--LYELVAVVVHIGGGPNH-GHYVSIV------KSHGG------ 264
Query: 623 AEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGG 682
W FDD+ V K + AV FG
Sbjct: 265 ------------------------------------WLLFDDETVEKI-DENAVEEFFGD 287
Query: 683 NDEDSGLTVKHSTNAYMLVY 702
+ + AY+L Y
Sbjct: 288 S--------PNQATAYVLFY 299
Score = 42.7 bits (101), Expect = 4e-04
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 28/93 (30%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 229
GL+N G TCY NS+LQ LYF N L L+ +F + K
Sbjct: 1 GLENFGNTCYCNSVLQALYFENLLT-------------------CLKDLFESISEQKKRT 41
Query: 230 GT-------KKLTKSFGWETLDSFMQHDVQEFL 255
G +L + E D++M D EFL
Sbjct: 42 GVISPKKFITRLKREN--ELFDNYMHQDAHEFL 72
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 103 bits (259), Expect = 6e-25
Identities = 80/362 (22%), Positives = 116/362 (32%), Gaps = 142/362 (39%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 411
GL+N G TCYMNS LQ +
Sbjct: 1 GLRNLGNTCYMNS-------------------------------ILQCLSA--------- 20
Query: 412 GTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLE-IKMKGTCVEGTVPKLFEGKMISFIK 470
Q D QEFL LLD L I + LF+G++ S +
Sbjct: 21 -----------------DQQDAQEFLLFLLDGLHSI----------IVDLFQGQLKSRLT 53
Query: 471 CKKVNYTSSRAETFYDIQLNVKGKKD------ILESFKDYIEPEVLEGDNK-YDAGVHGL 523
C TS+ E F + L + + + + + + E L+GDN
Sbjct: 54 CLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKK 113
Query: 524 QDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEF-YDRIELDDFLKEKGPT-P 581
+ A K +T LP VL +HL RF + + + K F + ++L ++ + T P
Sbjct: 114 RKATKKLTISRLPKVLIIHLKRFSFSRGS--TRKLTTPVTFPLNDLDLTPYVDTRSFTGP 171
Query: 582 ATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISY 641
Y L+AV+ H G +GGHY Y N
Sbjct: 172 FKYDLYAVVNHYGSLNGGHYTAYCKNNETND----------------------------- 202
Query: 642 LGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLV 701
W KFDD V+K S+ V S++AY+L
Sbjct: 203 -----------------WYKFDDSRVTKVSESSVV-----------------SSSAYILF 228
Query: 702 YI 703
Y
Sbjct: 229 YE 230
Score = 38.8 bits (91), Expect = 0.006
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQ 192
GL+N G TCYMNS+LQ L +Q
Sbjct: 1 GLRNLGNTCYMNSILQCL-SADQ 22
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 104 bits (262), Expect = 2e-24
Identities = 75/305 (24%), Positives = 113/305 (37%), Gaps = 53/305 (17%)
Query: 352 GLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFS 407
GL N GATC+MN +LQ L N + S N ++ A+ +F E +S
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYS 61
Query: 408 DKPVGTKKLTKSFGW----ETLDSFMQHDVQEFLRVLLDKLEIKMKG-----------TC 452
+ + L + Q D EF + LLD+L G C
Sbjct: 62 GDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNC 121
Query: 453 VEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKK----------------- 495
+ + + F G + S + C++ S+ + F D+ L++ K
Sbjct: 122 I---IHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTL 178
Query: 496 -DILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDC 554
D L+ F PE L +G Q+A K ++ + LPPVL L RF++ +
Sbjct: 179 SDCLDRF---TRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHS-LNKT 234
Query: 555 SVKFNDRFEF--------YDRIELDDFLKEKGPTPA-TYILHAVLVHSGDNHGGHYVVYI 605
S K + +F Y + D P TY L AV+VH G GHY Y
Sbjct: 235 SRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYC 294
Query: 606 NPKGD 610
Sbjct: 295 RQGDG 299
Score = 48.9 bits (117), Expect = 5e-06
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 170 GLKNQGATCYMNSLLQTL----YFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFS 225
GL N GATC+MN +LQ L N + S N ++ A+ +F E +S
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYS 61
Query: 226 DKPVGTKKLTKSFGW----ETLDSFMQHDVQEFL 255
+ + L + Q D EF
Sbjct: 62 GDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFF 95
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 97.4 bits (243), Expect = 1e-22
Identities = 86/366 (23%), Positives = 119/366 (32%), Gaps = 142/366 (38%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 411
GL N G TC+MNS+LQ ALA
Sbjct: 1 GLVNLGNTCFMNSVLQ--------------------------ALA--------------- 19
Query: 412 GTKKLTKSFGWETLDSFM-QHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIK 470
L + L+ F+ Q D E +VLL+ LE +K F+G + S I
Sbjct: 20 SLPSLIEY-----LEEFLEQQDAHELFQVLLETLEQLLKF---------PFDGLLASRIV 65
Query: 471 CKKVNYTSS-RAETFYDIQLNVKGKK-----DILESFKDYIEPEVLEG---DNKYDAGVH 521
C + +S R E+F + L V + + D++ E+++ D V
Sbjct: 66 CLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYKCDRCQTVIVR 125
Query: 522 GLQDAEKGVTFENLPPVLHLHLMRFQYDPVTD-----CSVKFNDRFEFYDRIELDDFLKE 576
LP +L +HL R +D C V F +R L L
Sbjct: 126 -------------LPQILCIHLSRSVFDGRGTSTKNSCKVSFPER--------LPKVL-- 162
Query: 577 KGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRR 636
Y L AV+VH G + GHYV Y P F KD E F ++ E
Sbjct: 163 -------YRLRAVVVHYGSHSSGHYVCY---------RRKPLFSKDKEPGSFVRMREGPS 206
Query: 637 KQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTN 696
HPW + D V + S+ E V +
Sbjct: 207 STS-----------------HPWWRISDTTVKEVSESE----------------VLEQKS 233
Query: 697 AYMLVY 702
AYML Y
Sbjct: 234 AYMLFY 239
Score = 37.7 bits (88), Expect = 0.013
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 170 GLKNQGATCYMNSLLQTL 187
GL N G TC+MNS+LQ L
Sbjct: 1 GLVNLGNTCFMNSVLQAL 18
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 98.8 bits (246), Expect = 2e-22
Identities = 67/281 (23%), Positives = 115/281 (40%), Gaps = 35/281 (12%)
Query: 350 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT--ESDDSNKSVALALQRVFHELQFS 407
+VGL N G TCY+NS+LQ LYF + + + + S + +S L +++ +
Sbjct: 24 FVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELAN 83
Query: 408 DKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGKMIS 467
P + + ++QHD QE L+ +L ++ V K F+G+++
Sbjct: 84 QAPRRLLNALREVN-PMYEGYLQHDAQEVLQCILG---------NIQELVEKDFQGQLVL 133
Query: 468 FIKCKKVNYTSSRAETFYDIQLNVKGK-------------------KDILESFKDYIEPE 508
+C + + R E F DI + V+ K + + + E
Sbjct: 134 RTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVE 193
Query: 509 VLEGDNKYDAGV-HGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDR 567
+ G++KY H +AE+ + F+ LP V+ +HL F + +
Sbjct: 194 RIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLL 253
Query: 568 IELDDFLKEKG--PTPATYILHAVLVHSGDN-HGGHYVVYI 605
L L+E P Y L AV++HSG GHY Y+
Sbjct: 254 TPLKLSLEEWSTKPKNDVYRLFAVVMHSGATISSGHYTAYV 294
Score = 47.2 bits (112), Expect = 2e-05
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 168 YVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPT--ESDDSNKSVALALQRVFHELQFS 225
+VGL N G TCY+NS+LQ LYF + + + + S + +S L +++ +
Sbjct: 24 FVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELAN 83
Query: 226 DKPVGTKKLTKSFGWETLDSFMQHDVQEFL 255
P + + ++QHD QE L
Sbjct: 84 QAPRRLLNALREVN-PMYEGYLQHDAQEVL 112
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 94.0 bits (234), Expect = 5e-21
Identities = 62/284 (21%), Positives = 103/284 (36%), Gaps = 33/284 (11%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-DSNKSVALALQRVFHELQFS-D 408
GL+N G CY+N+LLQ ++F L A+ + + ++ L +F L S
Sbjct: 1 SGLENNGPNCYLNALLQLMFFIPPLFNAILRHSADCPKENCLLCELGF--LFDMLDKSTG 58
Query: 409 KPVGTKKLTKSFGW--ETLDSFMQHDVQEFLRVLLDKL---------EIKMKGTCVEGTV 457
+ L ++F E +Q D+QE R +L++L +I E
Sbjct: 59 QNCQATNLLRTFSGIPEAAALGLQQDIQEANRFILEQLSLPLLTLKPDIFHNRCTGESGD 118
Query: 458 P--KLFEGKMISFIKCKKVNYTSSRAETFYDIQL-----NVKGKKDILESFKDYIEPEVL 510
LF IS I+C S + E ++L + + + + E
Sbjct: 119 SLDSLFGTSFISSIRCDSCGNESVKEEPLLTLELPYPPIDKPQGRTFSNILERSLNREK- 177
Query: 511 EGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIEL 570
+ A ++LPP+L + L R+ P + N + I L
Sbjct: 178 -INRITCNSCRKYSLANSRKHVKSLPPILGICLKRYNVTP-NGNWSRLNTFVDIPLEIRL 235
Query: 571 DDFLKEKGPTPAT-------YILHAVLVHSGD-NHGGHYVVYIN 606
F+++ Y L V+ H GD H GH V +I
Sbjct: 236 PHFIQDDEMVNEGPLSGNFKYELQGVVCHIGDSTHSGHLVSFIR 279
Score = 47.4 bits (113), Expect = 2e-05
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-DSNKSVALALQRVFHELQFS-D 226
GL+N G CY+N+LLQ ++F L A+ + + ++ L +F L S
Sbjct: 1 SGLENNGPNCYLNALLQLMFFIPPLFNAILRHSADCPKENCLLCELGF--LFDMLDKSTG 58
Query: 227 KPVGTKKLTKSFGW--ETLDSFMQHDVQEFLRV 257
+ L ++F E +Q D+QE R
Sbjct: 59 QNCQATNLLRTFSGIPEAAALGLQQDIQEANRF 91
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 86.6 bits (215), Expect = 2e-18
Identities = 82/376 (21%), Positives = 138/376 (36%), Gaps = 97/376 (25%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKM---PTESDDSNKSVALALQRVFHELQFSD 408
GL N G TCY+NS LQ L +LR A+ ++ S+ ++ AL+ +F +
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ 60
Query: 409 KPVGTKKLTKSFG-----WETLDS---FMQHDVQEFLRVLLDKLEIKMKGTCVEG-TVPK 459
+PV + + + + + Q D +E LL L K+ G +G + +
Sbjct: 61 EPVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQ 120
Query: 460 LFEGKMISFIKCKKV-NYTSSRAETFYDIQLNVKGKKD-------ILESFKDYIE--PEV 509
LF ++ + +KC + + E+ Y +Q ++ + + + ++ IE
Sbjct: 121 LFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIEKHSPT 180
Query: 510 LEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIE 569
L D Y K LP L + +RF + K + +F E
Sbjct: 181 LGRDAIYT----------KTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKF--PFE 228
Query: 570 LD--DFLKEKGPTPATYILHAVLVHSGDN-HGGHYVVYINPKGDNKSTALPPFDKDAEVL 626
LD + G Y L AV+ H G + GHYV ++ K D K
Sbjct: 229 LDLYELCTPSG----YYELVAVITHQGRSADSGHYVAWVRRKNDGK-------------- 270
Query: 627 FFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDED 686
W KFDDD VS+ ++++ + + GG D
Sbjct: 271 --------------------------------WIKFDDDKVSEVTEEDILKLS-GGGDWH 297
Query: 687 SGLTVKHSTNAYMLVY 702
AY+L+Y
Sbjct: 298 I---------AYILLY 304
Score = 45.0 bits (107), Expect = 9e-05
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKM---PTESDDSNKSVALALQRVFHELQFSD 226
GL N G TCY+NS LQ L +LR A+ ++ S+ ++ AL+ +F +
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ 60
Query: 227 KPVGTKKLTKSFG-----WETLDS---FMQHDVQE 253
+PV + + + + + Q D +E
Sbjct: 61 EPVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEE 95
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 84.7 bits (210), Expect = 9e-18
Identities = 78/348 (22%), Positives = 117/348 (33%), Gaps = 106/348 (30%)
Query: 352 GLKNQGATCYMNSLLQTLY--------------------------FTNQLRKAV------ 379
GL+N G +CY+NS+LQ L+ QL K
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSG 60
Query: 380 -YKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLR 438
Y P N + + KP K L G + Q D EFL
Sbjct: 61 RYSKPASLKSENDPYQVGI-----------KPSMFKALI-GKGHPEFSTMRQQDALEFLL 108
Query: 439 VLLDKLEIKMKGTCVEGTVP-KLFEGKMISFIKC---KKVNYTSSRAETFYDIQLNV--- 491
L+DKL+ + G P LF+ + ++C KKV YTS E + L V
Sbjct: 109 HLIDKLDRESFKN--LGLNPNDLFKFMIEDRLECLSCKKVKYTS---ELSEILSLPVPKD 163
Query: 492 ------KGKK-----DILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLH 540
+G+ + + K Y PE +E + + A K F+ P L
Sbjct: 164 EATEKEEGELVYEPVPLEDCLKAYFAPETIED---FCSTCKEKTTATKTTGFKTFPDYLV 220
Query: 541 LHLMRFQ----YDPV-TDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGD 595
+++ RFQ + P D + + P Y L A + H G
Sbjct: 221 INMKRFQLLENWVPKKLDVPIDVPEE-----------------LGPGKYELIAFISHKGT 263
Query: 596 N-HGGHYVVYINPKGDNKST------------ALPPFDKDAEVLFFFK 630
+ H GHYV +I + D + PP K ++F++
Sbjct: 264 SVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Score = 35.8 bits (83), Expect = 0.081
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 170 GLKNQGATCYMNSLLQTLY 188
GL+N G +CY+NS+LQ L+
Sbjct: 1 GLRNLGNSCYLNSVLQVLF 19
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 79.3 bits (195), Expect = 2e-15
Identities = 69/309 (22%), Positives = 101/309 (32%), Gaps = 56/309 (18%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAV----YKMPTESDDSNKSVALALQRVFHEL-- 404
GL+N+G TCYMN LQ L L + Y +D + F L
Sbjct: 72 NGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYE 131
Query: 405 ------QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKL-------------- 444
S P + MQ D QEFL LD L
Sbjct: 132 TPGCHGPKSISPRNFIDILSGRNKLFSGD-MQQDSQEFLIFFLDLLHEDLNGNKSRSPIL 190
Query: 445 ---------------------EIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAET 483
E + + V K F G+ S ++C+ NYTS+
Sbjct: 191 ELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAM 250
Query: 484 FYDIQLNVKGKK--DILESFKDYIEPEVLEGDNKYDAGVHGLQD-AEKGVTFENLPPVLH 540
F + + + E + E E LEG + + G ++ + K + LP VL
Sbjct: 251 FSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLI 310
Query: 541 LHLMRF----QYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN 596
+H+ RF D + + + F G P Y L V+ H+G
Sbjct: 311 IHISRFHISVMGRKKIDTPQGWKNTAS-VEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTL 369
Query: 597 HGGHYVVYI 605
+GGHY +
Sbjct: 370 NGGHYFSEV 378
Score = 39.2 bits (91), Expect = 0.007
Identities = 26/99 (26%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAV----YKMPTESDDSNKSVALALQRVFHEL-- 222
GL+N+G TCYMN LQ L L + Y +D + F L
Sbjct: 72 NGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYE 131
Query: 223 ------QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFL 255
S P + MQ D QEFL
Sbjct: 132 TPGCHGPKSISPRNFIDILSGRNKLFSGD-MQQDSQEFL 169
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an
independent folding unit with an eight-stranded
beta-sandwich structure found in meprins, TRAFs and
other proteins. Meprins comprise a class of
extracellular metalloproteases which are anchored to the
membrane and are capable of cleaving growth factors,
extracellular matrix proteins, and biologically active
peptides. TRAF molecules serve as adapter proteins that
link cell surface receptors of the Tumor Necrosis Factor
and 1nterleukin-1/Toll-like families to downstream
kinase cascades, which results in the activation of
transcription factors and the regulation of cell
survival, proliferation and stress responses in the
immune and inflammatory systems. Other members include
the ubiquitin ligases, TRIM37 and SPOP, and the
ubiquitin-specific proteases, HAUSP and Ubp21p. A large
number of uncharacterized members mostly from
lineage-specific expansions in C. elegans and rice
contain MATH and BTB domains, similar to SPOP. The MATH
domain has been shown to bind peptide/protein substrates
in TRAFs and HAUSP. It is possible that the MATH domain
in other members of this superfamily also interacts with
various protein substrates. The TRAF domain may also be
involved in the trimerization of TRAFs. Based on
homology, it is postulated that the MATH domain in
meprins may be involved in its tetramer assembly and
that the MATH domain, in general, may take part in
diverse modular arrangements defined by adjacent
multimerization domains.
Length = 126
Score = 68.2 bits (167), Expect = 9e-14
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFI-KENDWGFSHFMTFSD 312
+L + GE++ WS A L LV Q G + S+ H+FF K + WGF F+++ D
Sbjct: 49 YLELDKGESDLEKWSVRAEFTLKLVNQNGG-KSLSKSFTHVFFSEKGSGWGFPKFISWDD 107
Query: 313 LLDPDKGFIKDDSIILEVCVQ 333
L D ++ DDS+ +EV V+
Sbjct: 108 LEDS--YYLVDDSLTIEVEVK 126
Score = 47.0 bits (112), Expect = 2e-06
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 45/127 (35%)
Query: 68 RFSFKVEN-IHNLKDTALSPPHYARNLPWKIMFM-------------------------- 100
+ ++K+ N ++ SPP W+I
Sbjct: 2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEK 61
Query: 101 ----------------VKLLVRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSI 144
K L + F K + WGF F+++ DL D ++ DDS+
Sbjct: 62 WSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSL 119
Query: 145 ILEVCVQ 151
+EV V+
Sbjct: 120 TIEVEVK 126
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 60.6 bits (147), Expect = 3e-10
Identities = 61/258 (23%), Positives = 93/258 (36%), Gaps = 77/258 (29%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPV 411
GLKN G TC+ ++++Q+L+ Q V +
Sbjct: 1 GLKNVGNTCWFSAVIQSLFSQQQ---DVSEF----------------------------- 28
Query: 412 GTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKM----KGTCVEGTVPKLFEGKMIS 467
W D+F +K + M GT + + EGK
Sbjct: 29 ----THLLLDWLE-DAF---QAAAEAISPGEKSKNPMVQLFYGTFL---TEGVLEGK--P 75
Query: 468 FIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAE 527
F C ETF L V G ++ + +E + EG+ + H ++ +
Sbjct: 76 FCNC----------ETFGQYPLQVNGYGNL----HECLEAAMFEGEVELLPSDHSVKSGQ 121
Query: 528 KGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILH 587
+ F LPPVL L RF+++ K +D+ EF I+ + Y LH
Sbjct: 122 ERW-FTELPPVLTFELSRFEFNQGRPE--KIHDKLEFPQIIQ-----QVP------YELH 167
Query: 588 AVLVHSGDNHGGHYVVYI 605
AVLVH G + GHY YI
Sbjct: 168 AVLVHEGQANAGHYWAYI 185
Score = 34.1 bits (78), Expect = 0.22
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQ 192
GLKN G TC+ ++++Q+L+ Q
Sbjct: 1 GLKNVGNTCWFSAVIQSLFSQQQ 23
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 60.5 bits (146), Expect = 2e-09
Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 26/254 (10%)
Query: 350 YVGLKNQGATCYMNSLLQTLY--------FTNQLRKAVYKMPTESDDSNKSVALALQRVF 401
YVGL N G +CY++S++Q+L F + M + + L ++
Sbjct: 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMK 362
Query: 402 HE--LQFSD--KPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTV 457
++ + P+ K L F Q D EFL LL+K+ + + +
Sbjct: 363 ETPDNEYVNGISPLDFKMLIGQ-DHPEFGKFAQQDAHEFLLFLLEKIRKGERSYLIPP-I 420
Query: 458 PKLFE---GKMISFIKCKKVNYTSSRAETFYDIQLNVKG---KKDILESFKDYIEPEVLE 511
LFE + +S C V+Y+ I + ++G +DI +S + + P+ +E
Sbjct: 421 TSLFEFEVERRLSCSGCMDVSYSYESMLM---ICIFLEGNDEPQDIRKSVEAFFLPDTIE 477
Query: 512 GDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELD 571
G + A + ++LP L L + R+ + D I+L
Sbjct: 478 WSC---ENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLG 534
Query: 572 DFLKEKGPTPATYI 585
F+ + P +
Sbjct: 535 SFMSKFDPQTENLL 548
Score = 36.2 bits (83), Expect = 0.074
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 558 FNDRFEFYDRIELDDFLKEKG-----PTPATYILHAVLVHSGDN-HGGHYVVYINPKGDN 611
ND + E+ + +++ T Y L AV+ H GD+ H GHYV +I G +
Sbjct: 657 INDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKD 716
Query: 612 K 612
K
Sbjct: 717 K 717
Score = 32.3 bits (73), Expect = 1.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 168 YVGLKNQGATCYMNSLLQTLY 188
YVGL N G +CY++S++Q+L
Sbjct: 303 YVGLINLGNSCYLSSVIQSLV 323
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 55.6 bits (134), Expect = 4e-08
Identities = 68/316 (21%), Positives = 107/316 (33%), Gaps = 76/316 (24%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVY-----------------------KMPTESD 387
GL N G TCY+NSLLQ + LR V +E
Sbjct: 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQ 61
Query: 388 DSNKSVALALQRVFHELQFSDKPVGT--KKLTKSFGWETLDSFMQHDVQEFLRVLLDKLE 445
SN+ V L+ +F++L S+ T K+L + Q DV E + +L +LE
Sbjct: 62 RSNQFVY-ELRSLFNDLIHSNTRSVTPSKEL-------AYLALRQQDVTECIDNVLFQLE 113
Query: 446 IKMKGTCVEGTVPK-------------LFEGKMI-SFIKCKKVNYTSSRAETFYDIQLNV 491
+ ++ P LF GK + N S R +T + L V
Sbjct: 114 VALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLV 173
Query: 492 ------------KGKKDILESFKDYIEPEVLE-----GDNKYDAGVHGLQDAEKGVTFEN 534
KD+ ++ Y + + L + ++ +E
Sbjct: 174 DVGKKGREIVVLLEPKDLYDALDRYFDYDSLTKLPQRSQVQAQLAQPLQRELISMDRYEL 233
Query: 535 LPPV-----LHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAV 589
+ L ++ + V + + + + D LK G Y LHAV
Sbjct: 234 PSSIDDIDELIREAIQSESSLVRQAQNELAELKH--EIEKQFDDLKSYG-----YRLHAV 286
Query: 590 LVHSGDNHGGHYVVYI 605
+H G+ GHY VYI
Sbjct: 287 FIHRGEASSGHYWVYI 302
Score = 39.4 bits (92), Expect = 0.005
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAV 197
GL N G TCY+NSLLQ + LR V
Sbjct: 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLV 30
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 56.4 bits (136), Expect = 5e-08
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDS---------NKSVA 394
K G GL+N G TCYMNS LQ L T +LR Y + E ++S + SVA
Sbjct: 259 INKEAGTCGLRNLGNTCYMNSALQCLMHTWELRD--YFLSDEYEESINEENPLGMHGSVA 316
Query: 395 LA----LQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKL 444
A +++++ + P G KK SF E + Q D QEF+ LLD L
Sbjct: 317 SAYADLIKQLYDGNLHAFTPSGFKKTIGSF-NEEFSGYDQQDSQEFIAFLLDGL 369
Score = 50.7 bits (121), Expect = 3e-06
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDS---------NKSVA 212
K G GL+N G TCYMNS LQ L T +LR Y + E ++S + SVA
Sbjct: 259 INKEAGTCGLRNLGNTCYMNSALQCLMHTWELRD--YFLSDEYEESINEENPLGMHGSVA 316
Query: 213 LA----LQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFL 255
A +++++ + P G KK SF E + Q D QEF+
Sbjct: 317 SAYADLIKQLYDGNLHAFTPSGFKKTIGSF-NEEFSGYDQQDSQEFI 362
Score = 49.1 bits (117), Expect = 9e-06
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 504 YIEPEVL-EGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRF 562
+ +PE L D+ Y G + A K + LP +L +HL RF K +D
Sbjct: 684 FSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSV--RSFRDKIDDLV 741
Query: 563 EF-YDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNK 612
E+ D ++L Y L+AV H G GGHY Y +N
Sbjct: 742 EYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNG 792
>gnl|CDD|216189 pfam00917, MATH, MATH domain. This motif has been called the
Meprin And TRAF-Homology (MATH) domain. This domain is
hugely expanded in the nematode C. elegans.
Length = 116
Score = 50.8 bits (122), Expect = 9e-08
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 254 FLRVCNGETESSA-WSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSD 312
+L GE + WS L LV ++R + F K +G+ F+++ D
Sbjct: 40 YLHCEKGEKDELLGWSIETEFTLKLVSDNGK--SLTKRNKSHVFTKPTGYGWGKFISWDD 97
Query: 313 LLDPDKGFIKDDSIILEVCV 332
L + ++ DD+II+E V
Sbjct: 98 LEND---YVVDDTIIIEAEV 114
Score = 40.7 bits (96), Expect = 3e-04
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 92 NLPWKI----MFMVKLL----VRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDS 143
L W I + + +R + F K +G+ F+++ DL + ++ DD+
Sbjct: 51 LLGWSIETEFTLKLVSDNGKSLTKRNKSHVFTKPTGYGWGKFISWDDLEND---YVVDDT 107
Query: 144 IILEVCV 150
II+E V
Sbjct: 108 IIIEAEV 114
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology.
Length = 95
Score = 39.6 bits (93), Expect = 4e-04
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFM 308
+L E +S WS A L LV Q + F K + WGFS F+
Sbjct: 44 YLHCEKEECDSRKWSIEAEFTLKLVSQN---GKSLSKKDKHVFEKPSGWGFSKFI 95
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 39.6 bits (93), Expect = 0.006
Identities = 64/315 (20%), Positives = 108/315 (34%), Gaps = 59/315 (18%)
Query: 343 DSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLR------KAVYKMPTESDDSNKSVALA 396
G+VGL N Y N ++Q L +R + + + K ++
Sbjct: 112 GKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSEL 171
Query: 397 LQRVF-----------HE-LQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKL 444
+++++ HE LQ +K K F Q D EFL LL+ L
Sbjct: 172 IRKIWNPRNFKGHVSPHELLQAV-----SKVSKKKFSITE-----QSDPVEFLSWLLNTL 221
Query: 445 EIKMKGT--CVEGTVPKLFEGKMI--------------SFIKCKKVNYTSSRAET-FYDI 487
+ G+ + F+GK+ S K K + + + F +
Sbjct: 222 HKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLL 281
Query: 488 QLNVKGKKDILESFKDYIEPEVLEGD--NKYDAGVHGLQDAEKGVTFE--NLPPVLHLHL 543
L++ + ++ I P+V KYD G + + + LP L H+
Sbjct: 282 TLDLPPPPLFKDGNEENIIPQVPLKQLLKKYD-GKTETELKDSLKRYLISRLPKYLIFHI 340
Query: 544 MRFQY-DPVTDCS---VKFNDR-FEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHG 598
RF + + + V F + + D + F K Y L A +VH G
Sbjct: 341 KRFSKNNFFKEKNPTIVNFPIKNLDLSDYV---HFDKPSLNLSTKYNLVANIVHEGTPQE 397
Query: 599 -GHYVVYINPKGDNK 612
G + V + K NK
Sbjct: 398 DGTWRVQLRHKSTNK 412
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 36.4 bits (84), Expect = 0.037
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 537 PVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDN 596
+ + F D CS + YD + L + + H G +
Sbjct: 125 IPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSP-----TCGKFKLSLCSAVCHRGTS 179
Query: 597 -HGGHYVVYINPKGDNKSTALPPFDKDAEVLFF 628
GHYV ++ G T +A+ +FF
Sbjct: 180 LETGHYVAFVR-YGSYSLTETDNEAYNAQWVFF 211
>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor
(TNFR)-Associated Factor (TRAF) family, TRAF domain,
C-terminal MATH subdomain; TRAF molecules serve as
adapter proteins that link cell surface TNFRs and
receptors of the interleukin-1/Toll-like family to
downstream kinase signaling cascades which results in
the activation of transcription factors and the
regulation of cell survival, proliferation and stress
responses in the immune and inflammatory systems. There
are at least six mammalian and three Drosophila proteins
containing TRAF domains. The mammalian TRAFs display
varying expression profiles, indicating independent and
cell type-specific regulation. They display distinct, as
well as overlapping functions and interactions with
receptors. Most TRAFs, except TRAF1, share N-terminal
homology and contain a RING domain, multiple zinc finger
domains, and a TRAF domain. TRAFs form homo- and
heterotrimers through its TRAF domain. The TRAF domain
can be divided into a more divergent N-terminal alpha
helical region (TRAF-N), and a highly conserved
C-terminal MATH subdomain (TRAF-C) with an
eight-stranded beta-sandwich structure. TRAF-N mediates
trimerization while TRAF-C interacts with receptors.
Length = 149
Score = 32.2 bits (74), Expect = 0.48
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 21/96 (21%)
Query: 254 FLRVCNGETESS-AWSCYASAELILVPQ---------------KPGVEPFSRRIQHLFFI 297
F+ V GE ++ W L L+ Q P F R I
Sbjct: 59 FVHVMKGEYDALLEWPFRGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNI 118
Query: 298 KENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 333
+G+ F+ L G++KDD++ ++V V
Sbjct: 119 G---FGYPEFVPLEKLESR--GYVKDDTLFIKVEVD 149
>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p)
family, MATH domain; composed of fungal proteins with
similarity to Ubp21p of fission yeast. Ubp21p is a
deubiquitinating enzyme that may be involved in the
regulation of the protein kinase Prp4p, which controls
the formation of active spliceosomes. Members of this
family are similar to human HAUSP
(Herpesvirus-associated ubiquitin-specific protease) in
that they contain an N-terminal MATH domain and a
C-terminal catalytic protease (C19 family) domain. HAUSP
is also an ubiquitin-specific protease that specifically
catalyzes the deubiquitylation of p53 and MDM2. The MATH
domain of HAUSP contains the binding site for p53 and
MDM2. Similarly, the MATH domain of members in this
family may be involved in substrate binding.
Length = 134
Score = 31.2 bits (71), Expect = 0.72
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 267 WSCYASAELILV-PQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDK----GFI 321
WS A L++ P P ++ S H F ++ DWGF+ F+ L F+
Sbjct: 64 WSVCAQFALVISNPGDPSIQ-LSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFL 122
Query: 322 KDDSIILEVCV 332
++ + + V V
Sbjct: 123 ENGELNITVYV 133
>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH
domain; composed of proteins with similarity to human
SPOP. SPOP was isolated as a novel antigen recognized by
serum from a scleroderma patient, whose overexpression
in COS cells results in a discrete speckled pattern in
the nuclei. It contains an N-terminal MATH domain and a
C-terminal BTB (also called POZ) domain. Together with
Cul3, SPOP constitutes an ubiquitin E3 ligase which is
able to ubiquitinate the PcG protein BMI1, the variant
histone macroH2A1 and the death domain-associated
protein Daxx. Therefore, SPOP may be involved in the
regulation of these proteins and may play a role in
transcriptional regulation, apoptosis and X-chromosome
inactivation. Cul3 binds to the BTB domain of SPOP
whereas Daxx and the macroH2A1 nonhistone region have
been shown to bind to the MATH domain. Both MATH and BTB
domains are necessary for the nuclear speckled
accumulation of SPOP. There are many proteins, mostly
uncharacterized, containing both MATH and BTB domains
from C. elegans and plants which are excluded from this
family.
Length = 139
Score = 31.4 bits (71), Expect = 0.79
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 114 FIKENDWGFSHFMTFSDLLDPDKGFIKDD--SIILEVCVQAD 153
F++ DWGF F+ LLD G + DD ++ EV V D
Sbjct: 98 FVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139
Score = 31.4 bits (71), Expect = 0.79
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 296 FIKENDWGFSHFMTFSDLLDPDKGFIKDD--SIILEVCVQAD 335
F++ DWGF F+ LLD G + DD ++ EV V D
Sbjct: 98 FVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139
>gnl|CDD|220809 pfam10561, UPF0565, Uncharacterized protein family UPF0565. This
family of proteins has no known function.
Length = 295
Score = 32.4 bits (74), Expect = 0.83
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 250 DVQEFLRVCNGETESSAWSCY---ASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSH 306
D Q F S + C+ A IL + P H++ I+ + + +
Sbjct: 40 DYQNFFENMQQNPNSCQYYCWSLENVAW-ILSSRFPN--------SHIWVIRASRFNLNK 90
Query: 307 FMTFSDLLDPDKG 319
F +S+ ++ +
Sbjct: 91 FSCYSNFVNSNNF 103
>gnl|CDD|165452 PHA03181, PHA03181, helicase-primase primase subunit; Provisional.
Length = 764
Score = 31.8 bits (72), Expect = 1.6
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 27/96 (28%)
Query: 142 DSIILEVCVQADAPHGVSWD---------SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQ 192
D I L++ ++ H +SW+ + + + +VG Q F
Sbjct: 558 DGINLQMRLEGVYTHAMSWNANCYWLWNRNTRESDFVGFPKQPE------------FATH 605
Query: 193 LRKAVYKMPTE------SDDSNKSVALALQRVFHEL 222
++A+ + E +D+S ++ +Q+VF EL
Sbjct: 606 AKEALSTLLEEICLCNDTDESLLTIQEKVQKVFEEL 641
Score = 31.8 bits (72), Expect = 1.6
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 27/96 (28%)
Query: 324 DSIILEVCVQADAPHGVSWD---------SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQ 374
D I L++ ++ H +SW+ + + + +VG Q F
Sbjct: 558 DGINLQMRLEGVYTHAMSWNANCYWLWNRNTRESDFVGFPKQPE------------FATH 605
Query: 375 LRKAVYKMPTE------SDDSNKSVALALQRVFHEL 404
++A+ + E +D+S ++ +Q+VF EL
Sbjct: 606 AKEALSTLLEEICLCNDTDESLLTIQEKVQKVFEEL 641
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 268
Score = 31.3 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKA 196
T Y GL+N Y NSLLQ LYF R
Sbjct: 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNF 43
Score = 31.3 bits (71), Expect = 1.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 348 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKA 378
T Y GL+N Y NSLLQ LYF R
Sbjct: 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNF 43
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 30.4 bits (69), Expect = 5.1
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 56 DADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMF 99
A + + RF+ E + LK + L Y +LPW ++
Sbjct: 77 AAAEAEIRELRARFN---EALALLKRSRLGGRRYLYDLPWYLVI 117
>gnl|CDD|239745 cd03776, MATH_TRAF6, Tumor Necrosis Factor Receptor
(TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily,
TRAF domain, C-terminal MATH subdomain; composed of
proteins with similarity to human TRAF6, including the
Drosophila protein DTRAF2. TRAF molecules serve as
adapter proteins that link TNFRs and downstream kinase
cascades resulting in the activation of transcription
factors and the regulation of cell survival,
proliferation and stress responses. TRAF6 is the most
divergent in its TRAF domain among the mammalian TRAFs.
In addition to mediating TNFR family signaling, it is
also an essential signaling molecule of the
interleukin-1/Toll-like receptor superfamily. Whereas
other TRAF molecules display similar and overlapping
TNFR-binding specificities, TRAF6 binds completely
different sites on receptors such as CD40 and RANK.
TRAF6 serves as a molecular bridge between innate and
adaptive immunity and plays a central role in
osteoimmunology. DTRAF2, as an activator of nuclear
factor-kappaB, plays a pivotal role in Drosophila
development and innate immunity. TRAF6 contains a RING
finger domain, five zinc finger domains, and a TRAF
domain. The TRAF domain can be divided into a more
divergent N-terminal alpha helical region (TRAF-N), and
a highly conserved C-terminal MATH subdomain (TRAF-C)
with an eight-stranded beta-sandwich structure. TRAF-N
mediates trimerization while TRAF-C interacts with
receptors.
Length = 147
Score = 28.8 bits (65), Expect = 5.1
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 281 KPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 333
KP + F R +G+ F DLL +GF+K+D++++++ V
Sbjct: 100 KPELLAFQRPTTD---RNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147
>gnl|CDD|225098 COG2187, COG2187, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 337
Score = 30.1 bits (68), Expect = 5.1
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 539 LHL-HLMRFQYDPVT-DCSVKFNDRFEFYDRIELDDF------LKEKG-PTPATYILHAV 589
LHL ++ + +P DC ++FND F F D L D L+ +G A L+
Sbjct: 216 LHLRNICLWDGEPALFDC-IEFNDPFRFIDV--LYDLAFLAMDLEFRGRKDLARRFLNTY 272
Query: 590 LVHSGDNHG 598
L +GD G
Sbjct: 273 LEETGDWDG 281
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 29.4 bits (66), Expect = 6.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 564 FYDRIELDDFLKEKGP-------TPATYILHAVLVHSGDN-HGGHYVVY 604
+ RI D+LK+ T A Y L AV+ H G++ + GHY+ Y
Sbjct: 157 YKLRIATSDYLKKNEEIMKKYCGTDAKYSLVAVICHLGESPYDGHYIAY 205
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 29.3 bits (66), Expect = 8.8
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 35 NFMFGNQEENATATNQDVEMNDADDEDRARSEVRF 69
M G E + + D E +D DDE R V
Sbjct: 453 FSMGGKLEMPGSESVSDEEDDDDDDEVLYRRTVSL 487
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,467,609
Number of extensions: 3891542
Number of successful extensions: 2951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2852
Number of HSP's successfully gapped: 99
Length of query: 773
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 669
Effective length of database: 6,324,786
Effective search space: 4231281834
Effective search space used: 4231281834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)