RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17537
(773 letters)
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 497 bits (1280), Expect = e-169
Identities = 302/467 (64%), Positives = 356/467 (76%), Gaps = 49/467 (10%)
Query: 258 CNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPD 317
CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+FM +S++ DP+
Sbjct: 83 CNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPE 142
Query: 318 KGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRK 377
KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATCYMNSLLQTL+FTNQLRK
Sbjct: 143 KGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRK 202
Query: 378 AVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFL 437
AVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSFGWETLDSFMQHDVQE
Sbjct: 203 AVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELC 262
Query: 438 RVLLDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDI 497
RVLLD +E KMKGTCVEGT+PKLF GKM+S+I+CK+V+Y S R E +YDIQL++KGKK+I
Sbjct: 263 RVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNI 322
Query: 498 LESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVK 557
ESF DY+ E L+GDNKYDAG HGLQ+AEKGV F LPPVLHL LMRF YDP TD ++K
Sbjct: 323 FESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIK 382
Query: 558 FNDRFEFYDRIELDDFLKEKGPTP-ATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTAL 616
NDRFEF +++ LD+FL++ P A YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 383 INDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGK---- 438
Query: 617 PPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAV 676
WCKFDDDVVS+C+K+EA+
Sbjct: 439 ------------------------------------------WCKFDDDVVSRCTKEEAI 456
Query: 677 AHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTERDIPQE 723
HN+GG D L+V+H TNAYMLVYIRES+L+ VL+ VT+ DIPQ+
Sbjct: 457 EHNYGG--HDDDLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQ 501
Score = 231 bits (590), Expect = 2e-67
Identities = 150/260 (57%), Positives = 168/260 (64%), Gaps = 43/260 (16%)
Query: 42 EENATATNQDVEMNDADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMV 101
A + + D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M
Sbjct: 6 GNVALSDGHNTAEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMP 65
Query: 102 K-------------------------------------------LLVRRRIQHLFFIKEN 118
+ RRI HLFF KEN
Sbjct: 66 RFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEN 125
Query: 119 DWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATC 178
DWGFS+FM +S++ DP+KGFI DD + EV VQADAPHGV+WDSKKHTGYVGLKNQGATC
Sbjct: 126 DWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATC 185
Query: 179 YMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKKLTKSF 238
YMNSLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+ELQ SDKPVGTKKLTKSF
Sbjct: 186 YMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSF 245
Query: 239 GWETLDSFMQHDVQEFLRVC 258
GWETLDSFMQHDVQE RV
Sbjct: 246 GWETLDSFMQHDVQELCRVL 265
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 413 bits (1063), Expect = e-139
Identities = 251/380 (66%), Positives = 289/380 (76%), Gaps = 49/380 (12%)
Query: 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 404
KKHTGYVGLKNQGATCYMNSLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+EL
Sbjct: 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYEL 60
Query: 405 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGK 464
Q SDKPVGTKKLTKSFGWETLDSFMQHDVQE RVLLD +E KMKGTCVEGT+PKLF GK
Sbjct: 61 QHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGK 120
Query: 465 MISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQ 524
M+S+I+CK+V+Y S R E +YDIQL++KGKK+I ESF DY+ E L+GDNKYDAG HGLQ
Sbjct: 121 MVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQ 180
Query: 525 DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGP-TPAT 583
+AEKGV F LPPVLHL LMRF YDP TD ++K NDRFEF +++ LD+FL++ P PA
Sbjct: 181 EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN 240
Query: 584 YILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 241 YILHAVLVHSGDNHGGHYVVYLNPKGDGK------------------------------- 269
Query: 644 HAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703
WCKFDDDVVS+C+K+EA+ HN+GG D L+V+H TNAYMLVYI
Sbjct: 270 ---------------WCKFDDDVVSRCTKEEAIEHNYGG--HDDDLSVRHCTNAYMLVYI 312
Query: 704 RESELANVLEDVTERDIPQE 723
RES+L+ VL+ VT+ DIPQ+
Sbjct: 313 RESKLSEVLQAVTDHDIPQQ 332
Score = 141 bits (358), Expect = 4e-37
Identities = 86/96 (89%), Positives = 89/96 (92%)
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 222
KKHTGYVGLKNQGATCYMNSLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+EL
Sbjct: 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYEL 60
Query: 223 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVC 258
Q SDKPVGTKKLTKSFGWETLDSFMQHDVQE RV
Sbjct: 61 QHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVL 96
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 319 bits (819), Expect = e-101
Identities = 94/492 (19%), Positives = 163/492 (33%), Gaps = 112/492 (22%)
Query: 257 VCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDP 316
C+ + + C + ++I H+F I N+ F + +
Sbjct: 53 TCHEINSGATFMCLQCGFCGCWNHSHFLSHS-KQIGHIFGINSNNGLLFCFKCEDYIGNI 111
Query: 317 DKGFIKDDSIILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLR 376
D + IL + ++ G GL N G+TC+M+S+LQ L
Sbjct: 112 DL----INDAILAKYWDDVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFI 167
Query: 377 KAV----YKMPTESDDSNKSVALALQRVFHEL-------QFSDKPVGTKKLT-----KSF 420
+ + + +K + AL ++ HEL Q S T + T +
Sbjct: 168 RHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTC 227
Query: 421 GW---ETLDSFMQHDVQEFLRVLLDKLE-------------IKMKGTCVEGTVPKLFEGK 464
W + L + Q D EF + +++++ + E V +FEG
Sbjct: 228 AWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGS 287
Query: 465 MISFIKCKKVNYTSSRA-ETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGL 523
+ S I C S + F D+ L++K KK + E + + E L+ N + +
Sbjct: 288 LESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFNYHCGECNST 347
Query: 524 QDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFL--------- 574
QDA K + LP VL L L RF++ + K +D EF + + ++
Sbjct: 348 QDAIKQLGIHKLPSVLVLQLKRFEHLL-NGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHS 406
Query: 575 KEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEP 634
+ Y L ++ H G + GHY+ + G
Sbjct: 407 ENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQ----------------------- 443
Query: 635 RRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHS 694
W KF+D +VS S++E +
Sbjct: 444 ------------------------WFKFNDSMVSSISQEEVL-----------------K 462
Query: 695 TNAYMLVYIRES 706
AY+L Y
Sbjct: 463 EQAYLLFYTIRQ 474
Score = 116 bits (292), Expect = 1e-27
Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 23/170 (13%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQADAPHGVSWDSKKHT 166
++I H+F I N+ F + + D + IL + ++
Sbjct: 84 KQIGHIFGINSNNGLLFCFKCEDYIGNIDL----INDAILAKYWDDVCTKTMVPSMERRD 139
Query: 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAV----YKMPTESDDSNKSVALALQRVFHEL 222
G GL N G+TC+M+S+LQ L + + + +K + AL ++ HEL
Sbjct: 140 GLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHEL 199
Query: 223 -------QFSDKPVGTKKLT-----KSFGW---ETLDSFMQHDVQEFLRV 257
Q S T + T + W + L + Q D EF +
Sbjct: 200 YGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQF 249
Score = 28.8 bits (64), Expect = 7.6
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 743 STNAYMLVYIRES 755
AY+L Y
Sbjct: 462 KEQAYLLFYTIRQ 474
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Length = 415
Score = 210 bits (536), Expect = 4e-61
Identities = 73/411 (17%), Positives = 130/411 (31%), Gaps = 72/411 (17%)
Query: 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM---------PTESDDSNKSVAL 395
+ VG KN G TCY+N+ LQ LY N LR + + ++ +K + +
Sbjct: 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVI 78
Query: 396 ALQRVFHELQFSD-KPVGTKKLTKSFGW---------ETLDSFMQHDVQEFLRVLLDKLE 445
++R F LQ K V L + + Q D +E L +
Sbjct: 79 EMKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMS 138
Query: 446 IKMKGTCVEGTVPKLFEGKMISFIKCKKVNY--TSSRAETFYDIQLNVKGKKDILESFKD 503
I E F + + IK + T E+ +Q ++ G + + +
Sbjct: 139 IVFGDKFSE-----DFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLL 193
Query: 504 YIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFE 563
E +E + LP L + +RF + T+ K +
Sbjct: 194 EGLNEKIEKRSDLT---GANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVV 250
Query: 564 FYDRIELDDFL-------------KEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGD 610
F ++++ D L + + + + V +
Sbjct: 251 FPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQY 310
Query: 611 NKSTALPPFDKDAEVLFFFKLYEPRRKQISYL-------------------GHAYLHMTE 651
AL +KD + + K + P ++ GH Y
Sbjct: 311 ETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGH-YQAFIR 369
Query: 652 SIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVY 702
+ + W KF+DD VS K++ + GG S +A +L+Y
Sbjct: 370 DELDENKWYKFNDDKVSVVEKEKIESLAGGGE----------SDSALILMY 410
Score = 105 bits (262), Expect = 3e-24
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM---------PTESDDSNKSVAL 213
+ VG KN G TCY+N+ LQ LY N LR + + ++ +K + +
Sbjct: 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVI 78
Query: 214 ALQRVFHELQFSD-KPVGTKKLTKSFGW---------ETLDSFMQHDVQEFLRV 257
++R F LQ K V L + + Q D +E
Sbjct: 79 EMKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQ 132
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 180 bits (458), Expect = 3e-50
Identities = 67/448 (14%), Positives = 126/448 (28%), Gaps = 146/448 (32%)
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNK-----SVALALQ 398
+ GL N G TCYMN+ +Q + +L+ A+ + S + + AL+
Sbjct: 8 ASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALR 67
Query: 399 RVFHELQFSDKPVGTKKLTKSFGW--------ETLDSFMQHDVQEFLRVLLDKLEIKMKG 450
+F + + + L + ++Q D E ++ L+ K++
Sbjct: 68 DLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEA 127
Query: 451 TCVEGT-------------------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNV 491
+ + + F + + +KC + +QL+
Sbjct: 128 IEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSC 187
Query: 492 ---KGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQY 548
+ K + K ++ E+ K + K LP L + ++RF Y
Sbjct: 188 FINQEVKYLFTGLKLRLQEEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFY 243
Query: 549 DPVTDCSVKFNDRFEFYDRIELDDFLKEK------------------------------- 577
+ K +F +++ + +
Sbjct: 244 KEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKS 303
Query: 578 ------------------GPTPATYILHAVLVHSGDN-HGGHYVVYINPKGDNKSTALPP 618
Y L AVL H G + GHYV ++ K D
Sbjct: 304 SPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDE------- 356
Query: 619 FDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAH 678
W KFDDD VS + ++ +
Sbjct: 357 ----------------------------------------WIKFDDDKVSIVTPEDILRL 376
Query: 679 NFGGNDEDSGLTVKHSTNAYMLVYIRES 706
+ GG+ AY+L+Y
Sbjct: 377 SGGGDWH----------IAYVLLYGPRR 394
Score = 88.5 bits (219), Expect = 7e-19
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNK-----SVALALQ 216
+ GL N G TCYMN+ +Q + +L+ A+ + S + + AL+
Sbjct: 8 ASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALR 67
Query: 217 RVFHELQFSDKPVGTKKLTKSFGW--------ETLDSFMQHDVQEFLR 256
+F + + + L + ++Q D E
Sbjct: 68 DLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWI 115
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 175 bits (445), Expect = 6e-49
Identities = 85/410 (20%), Positives = 135/410 (32%), Gaps = 116/410 (28%)
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAV-----YKMPTESDDSNKSVALALQ 398
SK G GL+N G TC+MNS+LQ L T +LR + +++ ++
Sbjct: 3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFA 62
Query: 399 RVFHELQFSDK--PVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKL---------- 444
++ + S V + + Q D QEFLR LLD L
Sbjct: 63 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLR 122
Query: 445 ----------------------EIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYTSSRAE 482
+ + + LF G++ S + C Y S+ +
Sbjct: 123 PKSNPENLDHLPDDEKGRQMWRKYLEREDSR---IGDLFVGQLKSSLTCTDCGYCSTVFD 179
Query: 483 TFYDIQLNVKGKKDILESFKD----YIEPEVLEGDNKYD-AGVHGLQDAEKGVTFENLPP 537
F+D+ L + + + D + + +VL+GD K G + K + + P
Sbjct: 180 PFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPK 239
Query: 538 VLHLHLMRFQYDPVTDCSVKFNDRFEF-YDRIELDDFLKEKGPTPATYILHAVLVHSGDN 596
+L LHL RF + + K F ++L +F E A Y L+AV HSG
Sbjct: 240 ILVLHLKRFSESRIR--TSKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGTT 296
Query: 597 HGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEY 656
GGHY Y G +
Sbjct: 297 MGGHYTAYCRSPGTGE-------------------------------------------- 312
Query: 657 HPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRES 706
W F+D V+ S + +++AY+L Y S
Sbjct: 313 --WHTFNDSSVTPMSSSQVR-----------------TSDAYLLFYELAS 343
Score = 71.0 bits (174), Expect = 3e-13
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAV-----YKMPTESDDSNKSVALALQ 216
SK G GL+N G TC+MNS+LQ L T +LR + +++ ++
Sbjct: 3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFA 62
Query: 217 RVFHELQFSDK--PVGTKKLTKSFG--WETLDSFMQHDVQEFLR 256
++ + S V + + Q D QEFLR
Sbjct: 63 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLR 106
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 160 bits (405), Expect = 2e-43
Identities = 85/420 (20%), Positives = 137/420 (32%), Gaps = 128/420 (30%)
Query: 348 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAV----YKMPTESDDSNKSVALALQRVFHE 403
+G+VGL+N G TC++N++LQ L T LR ++ + + A V
Sbjct: 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGA 60
Query: 404 LQFSDK--PVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKL-----EIKMKGTCVE 454
L D V + F + + Q D QEFL++L+++L + +
Sbjct: 61 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPIL 120
Query: 455 GTVP---------------------------------------KLFEGKMISFIKCKKVN 475
P LF G++ S +KC+
Sbjct: 121 ANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACG 180
Query: 476 YTSSRAETFYDIQLNVK------GKKDILESFKDYIEPEVLEGDNKYD-AGVHGLQDAEK 528
Y S+ E F D+ L + GK + + F + + E LE +N + K
Sbjct: 181 YRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240
Query: 529 GVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEF-YDRIELDDFLKEKGPTPATYILH 587
+T + P +L LHL RF + K + +F R+ L DF +K Y L+
Sbjct: 241 KLTVQRFPRILVLHLNRFSASRGS--IKKSSVGVDFPLQRLSLGDFASDK-AGSPVYQLY 297
Query: 588 AVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYL 647
A+ HSG H GHY +
Sbjct: 298 ALCNHSGSVHYGHYTALC--RCQTG----------------------------------- 320
Query: 648 HMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESE 707
W ++D VS S+++ S+ Y+L Y E
Sbjct: 321 -----------WHVYNDSRVSPVSENQVA-----------------SSEGYVLFYQLMQE 352
Score = 70.4 bits (172), Expect = 4e-13
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 166 TGYVGLKNQGATCYMNSLLQTLYFTNQLRKAV----YKMPTESDDSNKSVALALQRVFHE 221
+G+VGL+N G TC++N++LQ L T LR ++ + + A V
Sbjct: 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGA 60
Query: 222 LQFSDK--PVGTKKLTKSFG--WETLDSFMQHDVQEFLR 256
L D V + F + + Q D QEFL+
Sbjct: 61 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLK 99
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 160 bits (407), Expect = 3e-43
Identities = 81/404 (20%), Positives = 123/404 (30%), Gaps = 108/404 (26%)
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAV----YKM---PTESDDSNKSVALA 396
GL+N G TCYMNS+LQ L L Y+ + VA
Sbjct: 56 GGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEE 115
Query: 397 LQRVFHELQFSD-KPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKL------EIK 447
+ L + + K + G + + Q D QE L L+D L
Sbjct: 116 FGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADN 175
Query: 448 MKGTCVEGT-----------------------VPKLFEGKMISFIKCKKVNYTSSRAETF 484
K E + LF+G+ S ++C + S E F
Sbjct: 176 RKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAF 235
Query: 485 YDIQLNVKGKKD--ILESFKDYIEPEVLEGDNKY-DAGVHGLQDAEKGVTFENLPPVLHL 541
+ L + + + + + + E L +N++ + +D+ K + LPPVL +
Sbjct: 236 MYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLV 295
Query: 542 HLMRFQYDPVTDCSVKFNDRFEF-YDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGH 600
HL RF YD K +F + ++L ++ Y L +V H G GGH
Sbjct: 296 HLKRFSYDGRW--KQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGH 353
Query: 601 YVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWC 660
Y Y + W
Sbjct: 354 YTAYCKNAARQR----------------------------------------------WF 367
Query: 661 KFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIR 704
KFDD VS S S+ AY+L Y
Sbjct: 368 KFDDHEVSDISVSSVK-----------------SSAAYILFYTS 394
Score = 66.1 bits (161), Expect = 2e-11
Identities = 25/105 (23%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAV----YKM---PTESDDSNKSVALA 214
GL+N G TCYMNS+LQ L L Y+ + VA
Sbjct: 56 GGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEE 115
Query: 215 LQRVFHELQFSD-KPVGTKKLTKSFG--WETLDSFMQHDVQEFLR 256
+ L + + K + G + + Q D QE L
Sbjct: 116 FGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLL 160
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 141 bits (356), Expect = 8e-37
Identities = 83/419 (19%), Positives = 117/419 (27%), Gaps = 125/419 (29%)
Query: 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM-------PTESDDSNKSVALALQRVF 401
G GL N G TC+MNS LQ L T L K +A A +
Sbjct: 7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 66
Query: 402 HELQFSD-KPVGTKKLTKSFG--WETLDSFMQHDVQEFLRVLLDKL-------------- 444
++ V + G + Q D QE L LLD L
Sbjct: 67 KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLE 126
Query: 445 EIKMKGTCVEGTVPK---------------LFEGKMISFIKCKKVNYTSSRAETFYDIQL 489
G + F G S + C + S + F + L
Sbjct: 127 LKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 186
Query: 490 NVKGKK-------------------DILESFKDYIEPEVLEGDNKYD-AGVHGLQDAEKG 529
+ KK + + + + E L + + Q A K
Sbjct: 187 PLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKK 246
Query: 530 VTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEF-YDRIELDDFLKEKGPTPATYILHA 588
+LP +L +HL RF Y+ K + EF + + +F+ P Y L A
Sbjct: 247 FDLWSLPKILVVHLKRFSYNRYW--RDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIA 304
Query: 589 VLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLH 648
V H G GHY Y K + K
Sbjct: 305 VSNHYGAMGVGHYTAYAKNKLNGK------------------------------------ 328
Query: 649 MTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESE 707
W FDD VS S+D+ V + AY+L Y R +
Sbjct: 329 ----------WYYFDDSNVSLASEDQIV-----------------TKAAYVLFYQRRDD 360
Score = 54.6 bits (131), Expect = 6e-08
Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM-------PTESDDSNKSVALALQRVF 219
G GL N G TC+MNS LQ L T L K +A A +
Sbjct: 7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 66
Query: 220 HELQFSD-KPVGTKKLTKSFG--WETLDSFMQHDVQEFLR 256
++ V + G + Q D QE L
Sbjct: 67 KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLA 106
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase;
1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A
3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Length = 155
Score = 102 bits (256), Expect = 1e-25
Identities = 52/89 (58%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
FL CN E++S++WSC+A A L ++ + + FSRRI HLFF KENDWGFS+FM +S++
Sbjct: 68 FL-QCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEV 126
Query: 314 LDPDKGFIKDDSIILEVCVQADAPHGVSW 342
DP+KGFI DD + EV VQADAPHGV+W
Sbjct: 127 TDPEKGFIDDDKVTFEVFVQADAPHGVAW 155
Score = 100 bits (251), Expect = 6e-25
Identities = 61/149 (40%), Positives = 74/149 (49%), Gaps = 43/149 (28%)
Query: 55 NDADDEDRARSEVRFSFKVENIHNLKDTALSPPHYARNLPWKIMFMVK------------ 102
D +D+ RSE F F VE L ++ LSPP + RNLPWKIM M +
Sbjct: 7 EDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVG 66
Query: 103 -------------------------------LLVRRRIQHLFFIKENDWGFSHFMTFSDL 131
RRI HLFF KENDWGFS+FM +S++
Sbjct: 67 FFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEV 126
Query: 132 LDPDKGFIKDDSIILEVCVQADAPHGVSW 160
DP+KGFI DD + EV VQADAPHGV+W
Sbjct: 127 TDPEKGFIDDDKVTFEVFVQADAPHGVAW 155
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 99.2 bits (246), Expect = 2e-21
Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 61/313 (19%)
Query: 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKS-----VALALQRVFHE 403
GY G++N G +CY+NS++Q L+ ++ + + + + + ++ H
Sbjct: 343 GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHG 402
Query: 404 L---QFS------------------DKPVGTKKLTKSFGW--ETLDSFMQHDVQEFLRVL 440
L ++S + + G + Q D QEF L
Sbjct: 403 LLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHL 462
Query: 441 LDKLEIKMKGTCVEGTVPKLFEGKMISFIKCKKVNYT----------------------- 477
++ +E + + V + + I + +KV YT
Sbjct: 463 INMVERNCRSSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELL 522
Query: 478 ------SSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVT 531
E + V+ + + Y PE ++ + + A K
Sbjct: 523 EYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD--FWSTALQAKSVAVKTTR 580
Query: 532 FENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLV 591
F + P L + + +F + K + E + +++ + G P L +
Sbjct: 581 FASFPDYLVIQIKKFTFGLDWVPK-KLDVSIEMPEELDISQL-RGTGLQPGEEELPDIAP 638
Query: 592 HSGDNHGGHYVVY 604
+
Sbjct: 639 PLVTPDEPKAPML 651
Score = 61.5 bits (148), Expect = 8e-10
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 28/118 (23%)
Query: 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKS-----VALALQRVFHE 221
GY G++N G +CY+NS++Q L+ ++ + + + + + ++ H
Sbjct: 343 GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHG 402
Query: 222 L---QFS------------------DKPVGTKKLTKSFGW--ETLDSFMQHDVQEFLR 256
L ++S + + G + Q D QEF
Sbjct: 403 LLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFL 460
Score = 39.1 bits (90), Expect = 0.005
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 581 PATYILHAVLVHSGDN-HGGHYVVYINPKG------DNK-STALPPFDKDAEVLFF 628
P Y L A + H G + GHYV +I +G D K + P + F+
Sbjct: 794 PGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFY 849
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 1e-11
Identities = 100/625 (16%), Positives = 190/625 (30%), Gaps = 177/625 (28%)
Query: 206 DSNKSVALALQRVFHELQFSDKPVGTKKL---TKSFGWETLDSFMQHDVQ---EFL---- 255
D KS+ L+ + + H + D GT +L S E + F++ ++ +FL
Sbjct: 40 DMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 256 -RVCNGETESSAWSCYASAELILVPQK------PGVEPFSRRIQHLFFIKENDWGFSHFM 308
+ + L Q ++P+ + Q L ++ +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 309 TFSDLLDPDKGFIKDDSIILEVC----VQADAPHGVSWDSKKHTGYVGLKNQGATCYMNS 364
G K + L+VC VQ + W + LKN + +
Sbjct: 159 ---------LGSGKT-WVALDVCLSYKVQCKMDFKIFW--------LNLKNCNSPETVLE 200
Query: 365 LLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQ--FSDKP----------VG 412
+LQ L + + T D + ++ L + + EL+ KP V
Sbjct: 201 MLQKLLYQ------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 413 TKKLTKSF--------------------GWETLDSFMQHDVQEF-----LRVLLDKLEIK 447
K +F T + H +LL L+ +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 448 MKGTCVE--GTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYI 505
+ E T P+ +S I + + + + +N I+ES + +
Sbjct: 315 PQDLPREVLTTNPRR-----LSIIAESIRDGLA-TWD-NWK-HVNCDKLTTIIESSLNVL 366
Query: 506 EPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFY 565
EP +D L ++P +L L +D + + ++ Y
Sbjct: 367 EPAEYR--KMFDR----LSVFPPSA---HIPTIL---LSLIWFDVIKSDVMVVVNKLHKY 414
Query: 566 ---------DRIELDD-FLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKG-DNKST 614
I + +L+ K Y LH +V Y PK D+
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH----------YNIPKTFDSDDL 464
Query: 615 ALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKF-----DDDVVSK 669
P D+ +F+ S++GH H+ I F D + +
Sbjct: 465 IPPYLDQ-----YFY----------SHIGH---HLKN-IEHPERMTLFRMVFLDFRFLEQ 505
Query: 670 CSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESE-----LANVLEDVTER------ 718
+ ++ A N G+ ++ +K Y YI +++ L N + D +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKF----Y-KPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 719 -----DIPQEDKIPYLGCNDEDSGL 738
D+ + + ED +
Sbjct: 561 CSKYTDLLR------IALMAEDEAI 579
Score = 53.7 bits (128), Expect = 2e-07
Identities = 53/332 (15%), Positives = 86/332 (25%), Gaps = 112/332 (33%)
Query: 540 HLHLMRF-----QY---DPVTDCSVKFNDRFEFYD----------RIELDDFLKEKGPTP 581
H H M F QY D ++ F D F+ D + E+D + K
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 582 ATYILHAVLVHSGDNHGGHYV-----------------VYINPKGDNK--STALPPFDKD 622
T L L+ + +V P + D
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 623 AEVLFFFKLYEPRRKQISYLGHA----------YLH-MT---------ESIGEYHPWCKF 662
+V F K R + L A + + + Y CK
Sbjct: 123 NQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 663 DDDV----VSKCSKDEAV-------AHNFGGNDE---DSGLTVKHSTN---AYMLVYIRE 705
D + + C+ E V + N D +K + A + ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 706 SELAN---VLEDV-----------------TERDIPQEDKIP-----YLGCNDEDSGLTV 740
N VL +V T R D + ++ + LT
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 741 KHSTNAYMLVYIRESELANVLEDVTERDIPQE 772
+S L L D +D+P+E
Sbjct: 301 DEV----------KSLLLKYL-DCRPQDLPRE 321
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation
pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A
3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Length = 145
Score = 58.4 bits (141), Expect = 2e-10
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 254 FLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDL 313
+L + + A + ++ K + F++ DWGF F+ L
Sbjct: 66 YLLLVSCP----KSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFL 121
Query: 314 LDPDKGFIKDDSIILEVCV 332
LD G + DD + L V
Sbjct: 122 LDEANGLLPDDKLTLFCEV 140
Score = 47.6 bits (113), Expect = 1e-06
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 102 KLLVRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 150
+ + F++ DWGF F+ LLD G + DD + L V
Sbjct: 92 ETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEV 140
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich,
protein-peptide complex, apoptosis; 2.00A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A
1d01_A 1d0a_A
Length = 168
Score = 51.5 bits (123), Expect = 8e-08
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 254 FLRVCNGETESS-AWSCYASAELILVPQKPG---VEPFSRRIQHLFFIKEND-----WGF 304
F V G ++ W L+L+ Q ++ F + F + + G
Sbjct: 77 FFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC 136
Query: 305 SHFMTFSDLLDPDKGFIKDDSIILEVCV 332
F S + + +++DD+I ++ V
Sbjct: 137 PLFCPVSKM-EAKNSYVRDDAIFIKAIV 163
Score = 37.3 bits (86), Expect = 0.006
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 19/87 (21%)
Query: 82 TALSPPHYARNLPWKIMFMVKLLV-------------RRRIQHLFFIKEND-----WGFS 123
+ L W V L++ R + F + + G
Sbjct: 78 FVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCP 137
Query: 124 HFMTFSDLLDPDKGFIKDDSIILEVCV 150
F S + + +++DD+I ++ V
Sbjct: 138 LFCPVSKM-EAKNSYVRDDAIFIKAIV 163
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling,
TRAF, adapter protein, cell surviVal; 2.30A {Homo
sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Length = 192
Score = 50.4 bits (120), Expect = 3e-07
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 254 FLRVCNGETESS-AWSCYASAELILVPQKPG---VEPFSRRIQHLFFIKEND-----WGF 304
F V G ++ W L+L+ Q ++ F + F + + G
Sbjct: 101 FFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC 160
Query: 305 SHFMTFSDLLDPDKGFIKDDSIILEVCV 332
F S + + +++DD+I ++ V
Sbjct: 161 PLFCPVSKM-EAKNSYVRDDAIFIKAIV 187
Score = 36.5 bits (84), Expect = 0.016
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 119 DWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 150
G F S + + +++DD+I ++ V
Sbjct: 157 ASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 4e-07
Identities = 69/426 (16%), Positives = 132/426 (30%), Gaps = 141/426 (33%)
Query: 364 SLL--QTLYFT-NQLRK---AVYKMPTE---SDDSNKSVA-LALQRVFHELQFSDKPVGT 413
LL +F +QL++ + PTE +DD + A L + F L + V
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--F--LGYVSSLV-- 72
Query: 414 KKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIK-MKGTCVEGTVPKLFEGKMISFIKCK 472
+ + L + L + E ++G + KL + + +K K
Sbjct: 73 ------------EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 473 KV--NYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGL---QDAE 527
++ NY ++R F + + +A + + Q
Sbjct: 121 ELIKNYITARIMA--------------KRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--- 163
Query: 528 KGVT---FENL-------PPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDR-IELDDFLKE 576
G T FE L ++ L++F + +++ D + + + + + ++L+
Sbjct: 164 -GNTDDYFEELRDLYQTYHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 577 KGPTPATYILHAVLVHSGDNHG----GHYVVY-----INPKGDNKS-------------T 614
TP L ++ + S G HYVV P G+ +S T
Sbjct: 222 PSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVT 279
Query: 615 AL--------PPFDKDA----EVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKF 662
A+ F VLFF I + E +P
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFF----------IGVRCY----------EAYPNTSL 319
Query: 663 DDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDV--TERDI 720
++ +++ +N G + ML I V + V T +
Sbjct: 320 PPSILE-----DSLENNEG-------------VPSPMLS-ISNLTQEQVQDYVNKTNSHL 360
Query: 721 PQEDKI 726
P ++
Sbjct: 361 PAGKQV 366
Score = 48.1 bits (114), Expect = 1e-05
Identities = 68/442 (15%), Positives = 114/442 (25%), Gaps = 194/442 (43%)
Query: 125 FMTFSDLLDPDKGFIKDDSIILEVCVQADA------PHG---VSW----DSKKHTGYVGL 171
+ T+ L+ IK + L ++ G + W + Y L
Sbjct: 177 YQTYHVLVGD---LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--L 231
Query: 172 KNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKS---------VALALQRV---- 218
+ +C + ++Q ++ + + P E K A+A+
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 219 -FHELQFSDKPVGTKKLTKSF--GWETLDSF-----------------------M----- 247
F K +T F G +++ M
Sbjct: 291 SFFVS-------VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 248 --QHDVQEFLRVCNGETESSAWSCYASAELI-----LV----PQ--------------KP 282
Q VQ+++ N + L+ LV PQ
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQ---VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 283 GVE----PFSRR---IQHLF------FIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILE 329
G++ PFS R + F F H S LL P I D
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPF---------H----SHLLVPASDLINKD----- 442
Query: 330 VCVQADAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-- 387
+ VS+++K ++ VY SD
Sbjct: 443 -----LVKNNVSFNAK----------------------------DIQIPVYDTFDGSDLR 469
Query: 388 DSNKSVALAL-QRVFHELQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEF-------LRV 439
+ S++ + + PV WET F + +F L V
Sbjct: 470 VLSGSISERIVDCIIRL------PV---------KWETTTQFKATHILDFGPGGASGLGV 514
Query: 440 LLDKLEIKMKGTCVE----GTV 457
L + GT V GT+
Sbjct: 515 LTHRN---KDGTGVRVIVAGTL 533
Score = 47.0 bits (111), Expect = 3e-05
Identities = 77/452 (17%), Positives = 137/452 (30%), Gaps = 127/452 (28%)
Query: 36 FMFGNQ--EENATATNQDVEMNDADDEDRARSE--VRF-SFKVENIHNLKDTALSPPHYA 90
F +Q E+ + E ADDE +E +F + + K
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ---- 82
Query: 91 RNLPWKIMFMVKLLVRRRIQHLF---FIKENDWGFSHFMTFSDLLDPDKGFIKDDSII-- 145
++ L + F +++ ND H + L + D +K +I
Sbjct: 83 ---------VLNLCLTE-----FENCYLEGND---IHALAAKLLQENDTTLVKTKELIKN 125
Query: 146 -LEVCVQADAPHGVSWDS-------KKHTG-YV---GLKNQGAT-CYMNSLLQTLY---- 188
+ + A P +S + + G QG T Y L+ LY
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG---QGNTDDYFEE-LRDLYQTYH 181
Query: 189 -----FTNQLRKAVYKMPTESDDSNKSVALALQRVFHELQFSDKPVGTKK---LTK---S 237
+ + ++ + D+ K + + L++ + P T L S
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEK----VFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 238 FGWETLDSFMQHDVQEFLRVCN------GE-TESSAWSCYASAELI---LVPQKPGVEPF 287
+ ++ GE + S L+ + + E F
Sbjct: 238 CPLIGVIQLAH-----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 288 ----SRRIQHLFFIKENDWGF-SHFMTF----------SDLLDPDKGF------IKDDSI 326
+ I LFFI G + + D L+ ++G I + +
Sbjct: 293 FVSVRKAITVLFFI-----GVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 327 -ILEVCVQADAPHGVSWDSKKHTGYVGLKNQGATCY-MNSLLQTLY-FTNQLRKAVYKMP 383
++ V H + K + L N GA ++ Q+LY LRKA K P
Sbjct: 347 EQVQDYVNKTNSHL---PAGKQV-EISLVN-GAKNLVVSGPPQSLYGLNLTLRKA--KAP 399
Query: 384 TESDDSNKSVALALQR--VFHELQFSDKPVGT 413
+ D S +R F +F PV +
Sbjct: 400 SGLDQSR---IPFSERKLKFS-NRFL--PVAS 425
Score = 34.6 bits (79), Expect = 0.16
Identities = 34/231 (14%), Positives = 56/231 (24%), Gaps = 100/231 (43%)
Query: 530 VTFENLPPVLHLH------------LMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKE- 576
+ N P L +H ++ + D +K F+ E+++
Sbjct: 1664 IVINN-PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK-----EINEHSTSY 1717
Query: 577 --KGP------T----PA----TYILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFD 620
+ T PA L KS L P D
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDL---------------------KSKGLIPAD 1756
Query: 621 KDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWC---------KFDD--DVVSK 669
F GH S+GEY + +VV
Sbjct: 1757 A------TF------------AGH-------SLGEY---AALASLADVMSIESLVEVVFY 1788
Query: 670 --CSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIRESELANVLEDVTER 718
+ AV + G + + + + L V+E V +R
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGR---VAASFSQEALQYVVERVGKR 1836
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Length = 530
Score = 51.9 bits (124), Expect = 5e-07
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 601 YVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWC 660
++ ++P+ LP FDKD +V+ F K+Y+P+ + ++Y GH Y ++ I + P
Sbjct: 107 FLETVDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVM 166
Query: 661 K 661
Sbjct: 167 C 167
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling
protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A
1lb4_A
Length = 160
Score = 48.0 bits (114), Expect = 2e-06
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 254 FLRVCNGETESS-AWSCYASAELILVPQKPG------VEPFSRRIQHLFFIK------EN 300
F+ GE +S W + L ++ Q E + + L F +
Sbjct: 64 FVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPK 123
Query: 301 DWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 332
+G+ FM L FIKDD++++ V
Sbjct: 124 GFGYVTFMHLEALRQR--TFIKDDTLLVRCEV 153
Score = 36.8 bits (85), Expect = 0.008
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 119 DWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 150
+G+ FM L FIKDD++++ V
Sbjct: 124 GFGYVTFMHLEALRQR--TFIKDDTLLVRCEV 153
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF
receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB:
1kzz_A 1l0a_A 1zms_A 1rf3_A
Length = 192
Score = 48.1 bits (114), Expect = 2e-06
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 254 FLRVCNGETESS-AWSCYASAELILVPQKPG----VEPFSRRIQHLFFIKEND-----WG 303
F + GE ++ W L+L+ Q + F F K G
Sbjct: 98 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 157
Query: 304 FSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 333
F+ + L + +IKDD+I ++V V
Sbjct: 158 CPVFVAQTVLENG--TYIKDDTIFIKVIVD 185
Score = 36.5 bits (84), Expect = 0.015
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 120 WGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 151
G F+ + L + +IKDD+I ++V V
Sbjct: 156 SGCPVFVAQTVLENG--TYIKDDTIFIKVIVD 185
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3,
CD40-binding protein, apoptosis; 2.80A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Length = 228
Score = 48.2 bits (114), Expect = 3e-06
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 254 FLRVCNGETESS-AWSCYASAELILVPQKPG----VEPFSRRIQHLFFIKEND-----WG 303
F + GE ++ W L+L+ Q + F F K G
Sbjct: 134 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 193
Query: 304 FSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 333
F+ + L + +IKDD+I ++V V
Sbjct: 194 CPVFVAQTVLENG--TYIKDDTIFIKVIVD 221
Score = 36.2 bits (83), Expect = 0.026
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 120 WGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 151
G F+ + L + +IKDD+I ++V V
Sbjct: 192 SGCPVFVAQTVLENG--TYIKDDTIFIKVIVD 221
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 42.1 bits (98), Expect = 6e-04
Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 352 GLKNQGATCYMNSLLQTLYFTNQLRKAV-YKMPTESDDSNKSVALALQRVF-------HE 403
G++ +CY++S L L+ + + V + ++D S L R +
Sbjct: 11 GIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYG 70
Query: 404 LQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKL 444
+ K + +K+ + + + + D +EFL +L +
Sbjct: 71 YVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHI 111
Score = 37.1 bits (85), Expect = 0.018
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 170 GLKNQGATCYMNSLLQTLYFTNQLRKAV-YKMPTESDDSNKSVALALQRVF-------HE 221
G++ +CY++S L L+ + + V + ++D S L R +
Sbjct: 11 GIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYG 70
Query: 222 LQFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFL 255
+ K + +K+ + + + + D +EFL
Sbjct: 71 YVCATKIMKLRKILEKVEAASGFTSEEKDPEEFL 104
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 37.2 bits (86), Expect = 0.015
Identities = 16/63 (25%), Positives = 25/63 (39%)
Query: 271 ASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEV 330
A + ++ K + F++ DWGF F+ LLD G + DD + L
Sbjct: 75 AKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFC 134
Query: 331 CVQ 333
V
Sbjct: 135 EVS 137
Score = 33.3 bits (76), Expect = 0.25
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 113 FFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 151
F++ DWGF F+ LLD G + DD + L V
Sbjct: 99 RFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVS 137
>3erv_A Putative C39-like peptidase; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.10A {Bacillus
anthracis}
Length = 236
Score = 29.4 bits (65), Expect = 4.3
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
Query: 556 VKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTA 615
+ N F D E + G TY H V++ + V +P D+
Sbjct: 147 IITNATFAPLDEDEFTTWETNNGDVSITYNEHCVVLI---GYDQESVYIRDPLKDSLDVK 203
Query: 616 LPPFDKDAEVLFFFKLYEPRRKQ-ISYL 642
+P F + + Q ISY+
Sbjct: 204 VPREK-------FEQAWVQMGSQAISYV 224
>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
2hfy_A 3uyn_A 1z97_A 1flj_A*
Length = 260
Score = 29.4 bits (66), Expect = 4.4
Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 21/113 (18%)
Query: 540 HLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDD----FLKEKGPTPATYILHAVLVHSGD 595
L YD + ++ N R+ DD + GP P Y L +H G
Sbjct: 43 SLQPWSVSYDGGSAKTILNNGH---TCRVVFDDTYDRSMLRGGPLPGPYRLRQFHLHWGS 99
Query: 596 N---------HGGHY-----VVYINPKGDNKSTALPPFDKDAEVLFFFKLYEP 634
+ G Y +V+ NPK + AL D A + F K+
Sbjct: 100 SDDHGSEHTVDGVKYAAELHLVHWNPKYNTFKEALKQRDGIAVIGIFLKIGHE 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,857,040
Number of extensions: 721661
Number of successful extensions: 1371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1287
Number of HSP's successfully gapped: 69
Length of query: 773
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 672
Effective length of database: 3,881,772
Effective search space: 2608550784
Effective search space used: 2608550784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.8 bits)