RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17537
(773 letters)
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 262 bits (669), Expect = 1e-81
Identities = 252/380 (66%), Positives = 292/380 (76%), Gaps = 49/380 (12%)
Query: 345 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 404
KKHTGYVGLKNQGATCYMNSLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+EL
Sbjct: 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYEL 60
Query: 405 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGTVPKLFEGK 464
Q SDKPVGTKKLTKSFGWETLDSFMQHDVQE RVLLD +E KMKGTCVEGT+PKLF GK
Sbjct: 61 QHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGK 120
Query: 465 MISFIKCKKVNYTSSRAETFYDIQLNVKGKKDILESFKDYIEPEVLEGDNKYDAGVHGLQ 524
M+S+I+CK+V+Y S R E +YDIQL++KGKK+I ESF DY+ E L+GDNKYDAG HGLQ
Sbjct: 121 MVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQ 180
Query: 525 DAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPT-PAT 583
+AEKGV F LPPVLHL LMRF YDP TD ++K NDRFEF +++ LD+FL++ P PA
Sbjct: 181 EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPAN 240
Query: 584 YILHAVLVHSGDNHGGHYVVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLG 643
YILHAVLVHSGDNHGGHYVVY+NPKGD K
Sbjct: 241 YILHAVLVHSGDNHGGHYVVYLNPKGDGK------------------------------- 269
Query: 644 HAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYI 703
WCKFDDDVVS+C+K+EA+ HN+GG+D+D L+V+H TNAYMLVYI
Sbjct: 270 ---------------WCKFDDDVVSRCTKEEAIEHNYGGHDDD--LSVRHCTNAYMLVYI 312
Query: 704 RESELANVLEDVTERDIPQE 723
RES+L+ VL+ VT+ DIPQ+
Sbjct: 313 RESKLSEVLQAVTDHDIPQQ 332
Score = 123 bits (309), Expect = 2e-31
Identities = 87/107 (81%), Positives = 91/107 (85%)
Query: 163 KKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNKSVALALQRVFHEL 222
KKHTGYVGLKNQGATCYMNSLLQTL+FTNQLRKAVY MPTE DDS+KSV LALQRVF+EL
Sbjct: 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYEL 60
Query: 223 QFSDKPVGTKKLTKSFGWETLDSFMQHDVQEFLRVCNGETESSAWSC 269
Q SDKPVGTKKLTKSFGWETLDSFMQHDVQE RV E+
Sbjct: 61 QHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGT 107
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 148 bits (373), Expect = 7e-40
Identities = 79/403 (19%), Positives = 117/403 (29%), Gaps = 106/403 (26%)
Query: 344 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-------DSNKSVALA 396
GL+N G TCYMNS+LQ L L + + D VA
Sbjct: 9 GGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEE 68
Query: 397 LQRVFHELQFSDKPV---GTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGT-- 451
+ L K+T + + Q D QE L L+D L +
Sbjct: 69 FGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADN 128
Query: 452 ---------------------------CVEGTVPKLFEGKMISFIKCKKVNYTSSRAETF 484
E + LF+G+ S ++C + S E F
Sbjct: 129 RKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAF 188
Query: 485 YDIQ--LNVKGKKDILESFKDYIEPEVLEGDNKYDAG-VHGLQDAEKGVTFENLPPVLHL 541
+ L K + + + + + E L +N++ +D+ K + LPPVL +
Sbjct: 189 MYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLV 248
Query: 542 HLMRFQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHY 601
HL RF YD + ++L ++ Y L +V H G GGHY
Sbjct: 249 HLKRFSYDGRWKQK-LQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHY 307
Query: 602 VVYINPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCK 661
Y + W K
Sbjct: 308 TAYCKNAARQR----------------------------------------------WFK 321
Query: 662 FDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIR 704
FDD VS S S+ AY+L Y
Sbjct: 322 FDDHEVSDISVSSVK-----------------SSAAYILFYTS 347
Score = 72.4 bits (176), Expect = 4e-14
Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 162 SKKHTGYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-------DSNKSVALA 214
GL+N G TCYMNS+LQ L L + + D VA
Sbjct: 9 GGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEE 68
Query: 215 LQRVFHELQFSDKPV---GTKKLTKSFGWETLDSFMQHDVQEFLRVC 258
+ L K+T + + Q D QE L
Sbjct: 69 FGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFL 115
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 146 bits (368), Expect = 3e-39
Identities = 80/399 (20%), Positives = 131/399 (32%), Gaps = 108/399 (27%)
Query: 349 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-----DSNKSVALALQRVFHE 403
G GL+N G TC+MNS+LQ L T +LR + D +++ ++ ++
Sbjct: 2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 61
Query: 404 LQFSDK----PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLEIKMKGTCV------ 453
+ S K + Q D QEFLR LLD L ++ +
Sbjct: 62 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNP 121
Query: 454 -----------------------EGTVPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLN 490
+ + LF G++ S + C Y S+ + F+D+ L
Sbjct: 122 ENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLP 181
Query: 491 VKG----KKDILESFKDYIEPEVLEGDNKYDAG-VHGLQDAEKGVTFENLPPVLHLHLMR 545
+ + +++ + + + +VL+GD K G + K + + P +L LHL R
Sbjct: 182 IAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKR 241
Query: 546 FQYDPVTDCSVKFNDRFEFYDRIELDDFLKEKGPTPATYILHAVLVHSGDNHGGHYVVYI 605
F + K F R + A Y L+AV HSG GGHY Y
Sbjct: 242 FSESRIRTS--KLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYC 299
Query: 606 NPKGDNKSTALPPFDKDAEVLFFFKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDD 665
G + W F+D
Sbjct: 300 RSPGTGE----------------------------------------------WHTFNDS 313
Query: 666 VVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIR 704
V+ S + +++AY+L Y
Sbjct: 314 SVTPMSSSQV-----------------RTSDAYLLFYEL 335
Score = 72.8 bits (177), Expect = 2e-14
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 167 GYVGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESD-----DSNKSVALALQRVFHE 221
G GL+N G TC+MNS+LQ L T +LR + D +++ ++ ++
Sbjct: 2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 61
Query: 222 LQFSDK----PVGTKKLTKSFGWETLDSFMQHDVQEFLRVC 258
+ S K + Q D QEFLR
Sbjct: 62 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFL 102
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 140 bits (353), Expect = 1e-36
Identities = 72/406 (17%), Positives = 127/406 (31%), Gaps = 70/406 (17%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM---------PTESDDSNKSVALALQRVF 401
VG KN G TCY+N+ LQ LY N LR + + ++ +K + + ++R F
Sbjct: 7 VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 66
Query: 402 HELQFSD-KPVGTKKLTKSFG---------WETLDSFMQHDVQEFLRVLLDKLEIKMKGT 451
LQ K V L + + Q D +E L + I
Sbjct: 67 ENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDK 126
Query: 452 CVEGTVPKLFEGKMISFIKCKKVNY--TSSRAETFYDIQLNVKGKKDILESFKDYIEPEV 509
E F + + IK + T E+ +Q ++ G + + + E
Sbjct: 127 FSE-----DFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK 181
Query: 510 LEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKFNDRFEFYDRIE 569
+E + LP L + +RF + T+ K + F +++
Sbjct: 182 IEKRSDLT---GANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLD 238
Query: 570 LDDF-------------LKEKGPTPATYILHAVLVHSGDNHGGHYVVYINPKGDNKSTAL 616
+ D + + + + V + AL
Sbjct: 239 VADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVAL 298
Query: 617 PPFDKDAEVLFFFKLYEPRRKQISYLGHAY------LHMTESIGEYH------------P 658
+KD + + K + P ++ Y H + H
Sbjct: 299 NESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENK 358
Query: 659 WCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTVKHSTNAYMLVYIR 704
W KF+DD VS K++ + GG S +A +L+Y
Sbjct: 359 WYKFNDDKVSVVEKEKIESLAGGGE----------SDSALILMYKG 394
Score = 78.7 bits (192), Expect = 5e-16
Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKM---------PTESDDSNKSVALALQRVF 219
VG KN G TCY+N+ LQ LY N LR + + ++ +K + + ++R F
Sbjct: 7 VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 66
Query: 220 HELQFSD-KPVGTKKLTKSFG---------WETLDSFMQHDVQEFLRVCNGETESSAWSC 269
LQ K V L + + Q D +E
Sbjct: 67 ENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDK 126
Query: 270 Y 270
+
Sbjct: 127 F 127
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 132 bits (332), Expect = 4e-34
Identities = 66/436 (15%), Positives = 124/436 (28%), Gaps = 140/436 (32%)
Query: 351 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNK-----SVALALQRVFHELQ 405
GL N G TCYMN+ +Q + +L+ A+ + S + + AL+ +F +
Sbjct: 5 CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMD 64
Query: 406 FSDKPVGTKKLTKSFGW--------ETLDSFMQHDVQEFLRVLLDKLEIKMKGTCVEGT- 456
+ + L + ++Q D E ++ L+ K++ +
Sbjct: 65 KTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVK 124
Query: 457 ------------------VPKLFEGKMISFIKCKKVNYTSSRAETFYDIQLNVKGKKDIL 498
+ + F + + +KC + +QL+ +++
Sbjct: 125 ETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVK 184
Query: 499 ESFKDYIEPEVLEGDNKYDAGVHGLQDAEKGVTFENLPPVLHLHLMRFQYDPVTDCSVKF 558
F ++ + E K + K LP L + ++RF Y + K
Sbjct: 185 YLF-TGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKV 243
Query: 559 NDRFEFYDRIELDDFLKE------------------------------------------ 576
+F +++ +
Sbjct: 244 LKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEP 303
Query: 577 -------KGPTPATYILHAVLVHSGDN-HGGHYVVYINPKGDNKSTALPPFDKDAEVLFF 628
Y L AVL H G + GHYV ++ K D
Sbjct: 304 FSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDE----------------- 346
Query: 629 FKLYEPRRKQISYLGHAYLHMTESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSG 688
W KFDDD VS + ++ + + GG+
Sbjct: 347 ------------------------------WIKFDDDKVSIVTPEDILRLSGGGD----- 371
Query: 689 LTVKHSTNAYMLVYIR 704
AY+L+Y
Sbjct: 372 -----WHIAYVLLYGP 382
Score = 80.6 bits (197), Expect = 9e-17
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 13/103 (12%)
Query: 169 VGLKNQGATCYMNSLLQTLYFTNQLRKAVYKMPTESDDSNK-----SVALALQRVFHELQ 223
GL N G TCYMN+ +Q + +L+ A+ + S + + AL+ +F +
Sbjct: 5 CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMD 64
Query: 224 FSDKPVGTKKLTKSFGW--------ETLDSFMQHDVQEFLRVC 258
+ + L + ++Q D E
Sbjct: 65 KTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQM 107
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 59.4 bits (143), Expect = 4e-11
Identities = 17/84 (20%), Positives = 31/84 (36%)
Query: 249 HDVQEFLRVCNGETESSAWSCYASAELILVPQKPGVEPFSRRIQHLFFIKENDWGFSHFM 308
+ +++L + A + ++ K + F++ DWGF F+
Sbjct: 51 EESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFI 110
Query: 309 TFSDLLDPDKGFIKDDSIILEVCV 332
LLD G + DD + L V
Sbjct: 111 RRDFLLDEANGLLPDDKLTLFCEV 134
Score = 46.7 bits (110), Expect = 9e-07
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 102 KLLVRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 150
+ + F++ DWGF F+ LLD G + DD + L V
Sbjct: 86 ETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEV 134
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2
(TRAF2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 152
Score = 48.2 bits (114), Expect = 3e-07
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 254 FLRVCNGETESSA-WSCYASAELILVPQ---KPGVEPFSRRIQHLFFIKEND-----WGF 304
F V G ++ W L+L+ Q + ++ F + F + + G
Sbjct: 61 FFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC 120
Query: 305 SHFMTFSDLLDPDKGFIKDDSIILEVCV 332
F S + + +++DD+I ++ V
Sbjct: 121 PLFCPVSKM-EAKNSYVRDDAIFIKAIV 147
Score = 39.0 bits (90), Expect = 5e-04
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 96 KIMFMVKLLVRRRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 150
I + Q G F S + + +++DD+I ++ V
Sbjct: 94 VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 147
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 45.6 bits (107), Expect = 3e-06
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 15/92 (16%)
Query: 254 FLRVCNGETE-SSAWSCYASAELILVPQKPGVEPFSRRI------------QHLFFIKEN 300
F+ GE + W + L ++ Q + +
Sbjct: 64 FVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPK 123
Query: 301 DWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 332
+G+ FM L + FIKDD++++ V
Sbjct: 124 GFGYVTFMHLEALR--QRTFIKDDTLLVRCEV 153
Score = 37.9 bits (87), Expect = 0.001
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 110 QHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCV 150
+ +G+ FM L + FIKDD++++ V
Sbjct: 115 RPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEV 153
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3
(TRAF3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 45.2 bits (106), Expect = 4e-06
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 12/90 (13%)
Query: 254 FLRVCNGETE-SSAWSCYASAELILVPQKPGV---------EPFSRRIQHLFFIKENDWG 303
F + GE + W L+L+ Q +P S + G
Sbjct: 61 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 120
Query: 304 FSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 333
F+ + L + +IKDD+I ++V V
Sbjct: 121 CPVFVAQTVLE--NGTYIKDDTIFIKVIVD 148
Score = 38.7 bits (89), Expect = 6e-04
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 107 RRIQHLFFIKENDWGFSHFMTFSDLLDPDKGFIKDDSIILEVCVQ 151
+ G F+ + L + +IKDD+I ++V V
Sbjct: 106 SSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 148
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
[TaxId: 32046]}
Length = 743
Score = 36.3 bits (84), Expect = 0.016
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 590 LVHSGDNHGGHYVVYINPKG--DNKSTALPPFDKDAEVLFFFKLYEPRRK---QISYLGH 644
+VH H V I KG +S+ L P DK A + F F P R Q+S H
Sbjct: 525 MVHHIHAFTIHVTVLILLKGVLFARSSRLIP-DK-ANLGFRFPCDGPGRGGTCQVSGWDH 582
Query: 645 AYLHM-----TESIGEYHPWCKFDDDVVSKCSKDEAVAHNFGGNDEDSGLTV 691
+L + S+ +H K DV + D V+H GGN S +T+
Sbjct: 583 VFLGLFWMYNCISVVIFHFSWKMQSDVWGTVAPDGTVSHITGGNFAQSAITI 634
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,919,297
Number of extensions: 141281
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 26
Length of query: 773
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 681
Effective length of database: 1,144,436
Effective search space: 779360916
Effective search space used: 779360916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)