Query psy17538
Match_columns 164
No_of_seqs 116 out of 408
Neff 7.4
Searched_HMMs 29240
Date Sat Aug 17 01:06:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rau_A Tyrosine-protein phosph 100.0 4.9E-46 1.7E-50 313.5 15.3 150 3-164 10-162 (363)
2 3c3r_A Programmed cell death 6 100.0 5.5E-45 1.9E-49 308.7 18.3 164 1-164 22-187 (380)
3 2xs1_A Programmed cell death 6 100.0 1.1E-41 3.9E-46 307.2 19.5 164 1-164 7-172 (704)
4 1zb1_A BRO1 protein; AIP1, BRO 100.0 3E-41 1E-45 286.6 12.4 154 3-164 9-165 (392)
5 3r9m_A BRO1 domain-containing 100.0 1.4E-28 4.7E-33 207.9 15.2 144 4-164 7-162 (376)
6 1zu2_A Mitochondrial import re 52.3 29 0.001 25.0 5.4 38 118-155 79-118 (158)
7 3iu6_A Protein polybromo-1; PB 33.8 64 0.0022 23.1 4.6 40 3-46 33-77 (147)
8 1klx_A Cysteine rich protein B 31.7 48 0.0017 22.1 3.7 14 142-155 111-124 (138)
9 3cqv_A Nuclear receptor subfam 30.8 55 0.0019 23.7 4.1 33 17-52 152-184 (199)
10 3qwp_A SET and MYND domain-con 25.9 67 0.0023 26.5 4.2 35 117-160 369-403 (429)
11 3vi8_A Peroxisome proliferator 25.1 61 0.0021 25.1 3.6 32 17-51 209-240 (273)
12 3iu5_A Protein polybromo-1; PB 24.5 1.6E+02 0.0054 19.5 6.3 31 12-46 49-79 (116)
13 2yy0_A C-MYC-binding protein; 23.9 28 0.00096 20.5 1.0 31 23-53 5-35 (53)
14 3mqm_A Probable histone-lysine 23.6 1.7E+02 0.0059 19.6 6.1 30 13-46 54-83 (126)
15 1wy6_A Hypothetical protein ST 22.8 11 0.00037 27.6 -1.2 33 119-151 125-163 (172)
16 3u3w_A Transcriptional activat 22.3 93 0.0032 23.1 4.1 19 144-162 253-271 (293)
17 1fcy_A RAR-gamma-1, retinoic a 21.9 79 0.0027 23.5 3.6 32 17-51 176-207 (236)
18 3d7c_A General control of amin 21.4 1.1E+02 0.0037 20.2 3.8 31 12-46 45-75 (112)
19 3n00_A REV-ERBA-alpha; reverba 21.1 68 0.0023 24.3 3.0 33 17-52 197-229 (245)
20 3u9q_A Peroxisome proliferator 20.9 83 0.0028 24.2 3.6 33 17-52 206-238 (269)
21 3qww_A SET and MYND domain-con 20.9 94 0.0032 25.7 4.1 35 117-160 380-414 (433)
No 1
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.9e-46 Score=313.51 Aligned_cols=150 Identities=25% Similarity=0.474 Sum_probs=142.0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhcc
Q psy17538 3 EFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKI 82 (164)
Q Consensus 3 ~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rf 82 (164)
|||++|+|+|.++||.+||++||.++|+ ++|+.|++||++|++||++++ .+..++++++.|.+||.||+.|+.||
T Consensus 10 pmi~l~lK~t~~vd~~~~L~~~I~~~y~---e~~~~~~~~l~~l~~LR~~~~--~~~~~~~g~~~L~~Yy~qL~~l~~rf 84 (363)
T 3rau_A 10 PMIWLDLKEAGDFHFQPAVKKFVLKNYG---ENPEAYNEELKKLELLRQNAV--RVPRDFEGCSVLRKYLGQLHYLQSRV 84 (363)
T ss_dssp CCCCCCCCCEEEECCHHHHHHHHHHTTC---SCTTTTHHHHHHHHHHHHHHH--TCCSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccCCCCCcCCCCChHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999 889999999999999999987 45778999999999999999999999
Q ss_pred CCCC---CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHH
Q psy17538 83 FPAT---VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFN 159 (164)
Q Consensus 83 p~~~---~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~ 159 (164)
|++. .+|.|+|+|+|++ +++++.++.||++|||||||++|||+|+.++|.+++|+|.||++||+|||+|+
T Consensus 85 p~~~~~~~~i~F~W~ds~~~-------~~~~~~sl~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~ 157 (363)
T 3rau_A 85 PMGSGQEAAVPVTWTEIFSG-------KSVAHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFA 157 (363)
T ss_dssp CCSTTCTTCCCEEEECTTTC-------CEEEESCHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccceeEEeecccCC-------ccccccCHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 9753 6899999999983 57899999999999999999999999999999999999999999999999999
Q ss_pred HhhcC
Q psy17538 160 YLKST 164 (164)
Q Consensus 160 ~l~e~ 164 (164)
||+++
T Consensus 158 ~l~~~ 162 (363)
T 3rau_A 158 YLREH 162 (363)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
No 2
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=100.00 E-value=5.5e-45 Score=308.66 Aligned_cols=164 Identities=47% Similarity=0.752 Sum_probs=150.4
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHh
Q psy17538 1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLES 80 (164)
Q Consensus 1 m~~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~ 80 (164)
|++||++|+|+|.+|||.++|++||.++|+.+.++|+.|+++|++|++||++++...++.++++++.|.+||.||..|+.
T Consensus 22 m~~~l~~plK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~~~~~~~~~~~~~~~~L~~Y~~~L~~l~~ 101 (380)
T 3c3r_A 22 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEP 101 (380)
T ss_dssp -CCCCCCCCCCBCCCCCHHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHHHHTT
T ss_pred hccccCCCCCCCCcCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHHHHHHc
Confidence 77999999999999999999999999999844356889999999999999999754567788899999999999999999
Q ss_pred ccCCCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHH
Q psy17538 81 KIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIF 158 (164)
Q Consensus 81 rfp~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f 158 (164)
|||.++ .+|.|+|+|+|+++++++|+.++++.++.||++|||||+|++||++|+.++|.+++|+|.||++||+|||+|
T Consensus 102 rfp~~~~~~~i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AAG~f 181 (380)
T 3c3r_A 102 KFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAF 181 (380)
T ss_dssp TTTCSSCCCCCCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccceeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999865 789999999998777666668899999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q psy17538 159 NYLKST 164 (164)
Q Consensus 159 ~~l~e~ 164 (164)
+||+|+
T Consensus 182 ~~l~~~ 187 (380)
T 3c3r_A 182 LHIKET 187 (380)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
No 3
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=100.00 E-value=1.1e-41 Score=307.21 Aligned_cols=164 Identities=47% Similarity=0.752 Sum_probs=150.7
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHh
Q psy17538 1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLES 80 (164)
Q Consensus 1 m~~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~ 80 (164)
|++||++|+|+|.+|||..||++||.++|+.+.++|+.|.++|.+|+.||++++...+++++++++.|.+||.||..|+.
T Consensus 7 ms~~l~~plK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~~~~L~~Y~~~L~~l~~ 86 (704)
T 2xs1_A 7 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEP 86 (704)
T ss_dssp -CCCCCCCCCCBCCCCSHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhhcCCCCCCCcCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999954357899999999999999998754457788899999999999999999
Q ss_pred ccCCCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHH
Q psy17538 81 KIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIF 158 (164)
Q Consensus 81 rfp~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f 158 (164)
|||.++ .+|.|+|+|+|++++.++|+.++++.++.||++|||||+|++||++|+.++|.+++|+|.||++||+|||+|
T Consensus 87 rfp~~~~~~~i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~f 166 (704)
T 2xs1_A 87 KFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAF 166 (704)
T ss_dssp GSCTTTCSSCCCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 999865 789999999998877676668899999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q psy17538 159 NYLKST 164 (164)
Q Consensus 159 ~~l~e~ 164 (164)
+||+++
T Consensus 167 ~~l~~~ 172 (704)
T 2xs1_A 167 LHIKET 172 (704)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
No 4
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-41 Score=286.61 Aligned_cols=154 Identities=25% Similarity=0.313 Sum_probs=138.7
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHH-HHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhc
Q psy17538 3 EFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLN-LFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESK 81 (164)
Q Consensus 3 ~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~-~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~r 81 (164)
|||++|+|+|.+|||..||++||.++|+++ +.|+.|.++|. +|++||++++ .+.+++++++.|.+||.||..|+.|
T Consensus 9 ~~l~~plK~t~~vd~~~~L~~~I~~~y~~~-~~~~~y~~~l~~~l~~lR~~~~--~~~~~~~~~~~l~~Y~~~L~~l~~r 85 (392)
T 1zb1_A 9 YLFDLKLKDTEKLDWKKGLSSYLKKSYGSS-QWRTFYDEKATSELDHLRNNAN--GELAPSSLSEQNLKYYSFLEHLYFR 85 (392)
T ss_dssp CCCCCCCCCBCCCCHHHHHHHHHHHHSCTT-TGGGGCCHHHHHHHHHHHHHTT--SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCccCHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999932 12777899999 9999999987 4578899999999999999999999
Q ss_pred cCCCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHH
Q psy17538 82 IFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFN 159 (164)
Q Consensus 82 fp~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~ 159 (164)
||.++ .++.|+|+|+|.. +.+ ++.++++.++.||++|||||+|++|||+|+.++|. |+|.||++||+|||+|+
T Consensus 86 f~~~~~~~~i~F~W~d~l~~-~~~-~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~~~r~---~lk~A~~~fq~AAG~f~ 160 (392)
T 1zb1_A 86 LGSKGSRLKMDFTWYDAEYS-SAQ-KGLKYTQHTLAFEKSCTLFNIAVIFTQIARENINE---DYKNSIANLTKAFSCFE 160 (392)
T ss_dssp HGGGGGGGCCCEEEECCCCS-SSC-SSCEEEECCHHHHHHHHHHHHHHHHHHHHHHTTTS---SSHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccceeeeeccccc-ccC-CCCceeccchHHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHHHHH
Confidence 99754 7899999999962 222 24789999999999999999999999999999885 99999999999999999
Q ss_pred HhhcC
Q psy17538 160 YLKST 164 (164)
Q Consensus 160 ~l~e~ 164 (164)
||+|+
T Consensus 161 ~l~~~ 165 (392)
T 1zb1_A 161 YLSEN 165 (392)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
No 5
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=99.96 E-value=1.4e-28 Score=207.92 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=119.8
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhh--ccCCChh-hHHHHHHHHHHHHHhHh
Q psy17538 4 FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWK--VFEKHES-SLEVIYSYYDHLVSLES 80 (164)
Q Consensus 4 ~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~--~~~~~~~-~~~~l~~Yy~qL~~l~~ 80 (164)
|=+.|||.|.+|+|.. .... +++ ...+.++++..+|..++.. .+..+.+ .++.+.+||.+|..|..
T Consensus 7 ~~r~~lk~T~~v~F~~-------~~~~---~~~-~~~~~~~~l~~~R~~l~~~~~~~~~~~~~~~~~l~~Yl~~L~~l~~ 75 (376)
T 3r9m_A 7 FHRNPLKATAPVSFNY-------YGVV---TGP-SASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFIN 75 (376)
T ss_dssp CCCCCCCCBCCCCCCC-------GGGB---CSH-HHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHGGGTB
T ss_pred cccCCCCCCceeeeee-------eeec---CCc-hHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5578999999999963 2223 333 5688899999999988632 3344445 46999999999999999
Q ss_pred ccCCC--C----CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhC---CCCChhhHHHHHHHH
Q psy17538 81 KIFPA--T----VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQ---SLDTDEGLKLAAKML 151 (164)
Q Consensus 81 rfp~~--~----~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~---~~~~~~~~K~A~~~f 151 (164)
+|+.. + .+|.|+|+|+|++ +.++++.++.||++|||||||++|||+|+.+ +|.++||+|.||++|
T Consensus 76 ~~~~~~~~~~l~~~i~F~W~dsl~~------~~~~~~~sl~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~f 149 (376)
T 3r9m_A 76 SLDESTQESKLRYIQNFKWTDTLQG------QVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSL 149 (376)
T ss_dssp CSSCTTCBCTTTTSCCEEECCTTST------TCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred ccccCCccccccccceeEeeCCCCC------CCceecccHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence 98852 2 5799999999984 4688999999999999999999999999986 578899999999999
Q ss_pred HHHHHHHHHhhcC
Q psy17538 152 QSSAGIFNYLKST 164 (164)
Q Consensus 152 q~AAg~f~~l~e~ 164 (164)
|+|||+|+||+|+
T Consensus 150 q~AAG~f~~l~~~ 162 (376)
T 3r9m_A 150 KIAAGIFKHLKES 162 (376)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
No 6
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=52.28 E-value=29 Score=25.02 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC--ChhhHHHHHHHHHHHH
Q psy17538 118 RVCVLFNIAALQSAIAQAQSLD--TDEGLKLAAKMLQSSA 155 (164)
Q Consensus 118 ~a~vLfNiaa~~s~~a~~~~~~--~~~~~K~A~~~fq~AA 155 (164)
.+-++||+|.+|..+|.-..+. ..+...+|..+|++|.
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence 4567899999999887642110 0135677777777764
No 7
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=33.76 E-value=64 Score=23.14 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=29.5
Q ss_pred CCCCCCCCC-----CCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHH
Q psy17538 3 EFLAVPLKK-----PTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLF 46 (164)
Q Consensus 3 ~~l~iPlK~-----t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l 46 (164)
+|+.+|-|+ ..|++|.. +++=|.+.-. ...+.|.+|+..+
T Consensus 33 ~F~~LPsk~pdYY~k~Pi~l~~-Ikkri~~~~Y---~sld~f~~D~~lm 77 (147)
T 3iu6_A 33 SLAEIPAVDPNFPNKPPLTFDI-IRKNVENNRY---RRLDLFQEHMFEV 77 (147)
T ss_dssp GGTTCCSSCTTSTTSCCCCHHH-HHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHhHCCCCCccccCCCCcCHHH-HHHHHhcCCC---CCHHHHHHHHHHH
Confidence 477888876 67899865 7777777544 3578899998755
No 8
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=31.74 E-value=48 Score=22.14 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHH
Q psy17538 142 EGLKLAAKMLQSSA 155 (164)
Q Consensus 142 ~~~K~A~~~fq~AA 155 (164)
.+.++|..+|++|+
T Consensus 111 ~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 111 KNEKQAVKTFEKAC 124 (138)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 34555555555554
No 9
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=30.78 E-value=55 Score=23.73 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=27.1
Q ss_pred chHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHH
Q psy17538 17 IIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTA 52 (164)
Q Consensus 17 ~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~ 52 (164)
+...|.+|+..+|. +.|..|.+-|..+..||.-
T Consensus 152 ~~~aL~~y~~~~~~---~~~~Rf~~LL~~L~~Lr~l 184 (199)
T 3cqv_A 152 LIRALRTLIMKNHP---NEASIFTKLLLKLPDLRSL 184 (199)
T ss_dssp HHHHHHHHHHHHCT---TCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC---ChhhHHHHHHHHHHHHHHH
Confidence 45678899999988 6688999999988888864
No 10
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=25.93 E-value=67 Score=26.50 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHH
Q psy17538 117 ERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNY 160 (164)
Q Consensus 117 E~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~~ 160 (164)
+.|..++|+|.+|...|. ..+|..+|++|..++.-
T Consensus 369 ~~a~~l~nLa~~~~~~g~---------~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGM---------FPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHH
Confidence 678889999999876442 68899999999988864
No 11
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=25.07 E-value=61 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=27.1
Q ss_pred chHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHH
Q psy17538 17 IIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRT 51 (164)
Q Consensus 17 ~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~ 51 (164)
+...|..||..+|. +.|..|.+-+..|-.||.
T Consensus 209 ~~~aL~~yi~~~~p---~~~~rF~kLL~~Lp~LR~ 240 (273)
T 3vi8_A 209 IVHVLRLHLQSNHP---DDIFLFPKLLQKMADLRQ 240 (273)
T ss_dssp HHHHHHHHHHHHCT---TCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---ChhhHHHHHHHHHHHHHH
Confidence 45778999999998 667889999999988985
No 12
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=24.54 E-value=1.6e+02 Score=19.50 Aligned_cols=31 Identities=13% Similarity=0.458 Sum_probs=21.1
Q ss_pred CCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHH
Q psy17538 12 PTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLF 46 (164)
Q Consensus 12 t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l 46 (164)
..|+||.+ +++=|.+... .+++.|..|+..+
T Consensus 49 ~~PmdL~t-I~~kl~~~~Y---~s~~~f~~D~~li 79 (116)
T 3iu5_A 49 SQPIDLMK-IQQKLKMEEY---DDVNLLTADFQLL 79 (116)
T ss_dssp SSCCCHHH-HHHHHHTTCC---CSHHHHHHHHHHH
T ss_pred CCCCCHHH-HHHHHHcCCC---CCHHHHHHHHHHH
Confidence 45789977 5555555444 3678999998865
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.87 E-value=28 Score=20.54 Aligned_cols=31 Identities=0% Similarity=-0.015 Sum_probs=13.4
Q ss_pred HHHHhhCCCCcccHHHHHHHHHHHHHHHHHH
Q psy17538 23 NLIALQFPNDNEKLDILNEKLNLFSKLRTAA 53 (164)
Q Consensus 23 ~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~ 53 (164)
.||..+-|...+++.+++.--.+...||..+
T Consensus 5 efIk~~LG~~~p~~~d~eaLk~E~~eLk~k~ 35 (53)
T 2yy0_A 5 DFLKHHLGAATPENPEIELLRLELAEMKEKY 35 (53)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 4566665522144566776667777777665
No 14
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=23.58 E-value=1.7e+02 Score=19.61 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=20.4
Q ss_pred CCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHH
Q psy17538 13 TDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLF 46 (164)
Q Consensus 13 ~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l 46 (164)
.|+||.+ +++=|.+... .+++.|..|+..+
T Consensus 54 ~PmdL~t-I~~kl~~~~Y---~s~~~f~~D~~li 83 (126)
T 3mqm_A 54 DPLDLIT-IEKQILTGYY---KTVEAFDADMLKV 83 (126)
T ss_dssp SCCCHHH-HHHHHHHTCC---CSHHHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHcCCC---CCHHHHHHHHHHH
Confidence 5789877 4555555444 3678999999865
No 15
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=22.76 E-value=11 Score=27.61 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhC------CCCChhhHHHHHHHH
Q psy17538 119 VCVLFNIAALQSAIAQAQ------SLDTDEGLKLAAKML 151 (164)
Q Consensus 119 a~vLfNiaa~~s~~a~~~------~~~~~~~~K~A~~~f 151 (164)
+.+|+-||.+|-.+|... .++.+.|+|+||..-
T Consensus 125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kEAC~~i 163 (172)
T 1wy6_A 125 ASILVAIANALRRVGDERDATTLLIEACKKGEKEACNAV 163 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHHHHHHH
Confidence 889999999999888763 345667888888754
No 16
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=22.30 E-value=93 Score=23.13 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy17538 144 LKLAAKMLQSSAGIFNYLK 162 (164)
Q Consensus 144 ~K~A~~~fq~AAg~f~~l~ 162 (164)
.++|..+|++|--+++.+.
T Consensus 253 ~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 253 EAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4788999999988887654
No 17
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=21.88 E-value=79 Score=23.54 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=26.6
Q ss_pred chHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHH
Q psy17538 17 IIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRT 51 (164)
Q Consensus 17 ~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~ 51 (164)
+..+|.+|+..+|. +.|..|.+-+..|..||.
T Consensus 176 ~~~aL~~y~~~~~p---~~~~Rf~~LL~~L~~Lr~ 207 (236)
T 1fcy_A 176 LLEALRLYARRRRP---SQPYMFPRMLMKITDLRG 207 (236)
T ss_dssp HHHHHHHHHHHHCT---TCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC---CchhHHHHHHHHhHHHHH
Confidence 45778899999888 567889999999999986
No 18
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=21.41 E-value=1.1e+02 Score=20.22 Aligned_cols=31 Identities=6% Similarity=0.133 Sum_probs=21.2
Q ss_pred CCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHH
Q psy17538 12 PTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLF 46 (164)
Q Consensus 12 t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l 46 (164)
..|+||.+ +++=|.+.+. .++++|..|+..+
T Consensus 45 k~PmdL~t-I~~kl~~~~Y---~s~~~f~~Dv~li 75 (112)
T 3d7c_A 45 RFPIDLKT-MTERLRSRYY---VTRKLFVADLQRV 75 (112)
T ss_dssp SSCCCHHH-HHHHHHTTCC---CSHHHHHHHHHHH
T ss_pred cCCcCHHH-HHHHHcCCCC---cCHHHHHHHHHHH
Confidence 35789977 5555555444 4678999998865
No 19
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=21.09 E-value=68 Score=24.34 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=25.4
Q ss_pred chHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHH
Q psy17538 17 IIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTA 52 (164)
Q Consensus 17 ~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~ 52 (164)
+..+|.+|+..+|. +.|..|.+-|..|-.||.-
T Consensus 197 ~~~aL~~y~~~~~p---~~~~RF~~LLl~Lp~LR~l 229 (245)
T 3n00_A 197 LLRALRALVLKNRP---LETSRFTKLLLKLPDLRTL 229 (245)
T ss_dssp HHHHHHHHHHHHCT---TCTTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHhHHHHHH
Confidence 35678888888887 5677888888888888863
No 20
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=20.89 E-value=83 Score=24.23 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=27.5
Q ss_pred chHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHH
Q psy17538 17 IIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTA 52 (164)
Q Consensus 17 ~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~ 52 (164)
+..+|.+|+..+|. +.|..|.+-|..|-.||.-
T Consensus 206 ~~~aL~~y~~~~~p---~~~~Rf~kLL~~Lp~LR~i 238 (269)
T 3u9q_A 206 LLQALELQLKLNHP---ESSQLFAKLLQKMTDLRQI 238 (269)
T ss_dssp HHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---ChhhHHHHHHHHhHHHHHH
Confidence 45678999999998 5688999999999999963
No 21
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=20.86 E-value=94 Score=25.74 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHH
Q psy17538 117 ERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNY 160 (164)
Q Consensus 117 E~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~~ 160 (164)
+.|..++|+|.+|...|. ..+|..+|++|..++.-
T Consensus 380 ~~a~~l~nLa~~~~~qg~---------~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLEN---------KAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC---------HHHHHHHHHHHHHHHHH
Confidence 678899999999976552 58999999999988864
Done!