BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17539
(443 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6A4J8|UBP7_MOUSE Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1
SV=1
Length = 1103
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 2 FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYK 61
F DL++RV+V FCDKTI ND GF + LS +M Y Q+ VAQ LNTD L+Q FK Q Y+
Sbjct: 788 FRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYR 847
Query: 62 DTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKV----QAYKD 117
D PGNPL HN+EGTL+D+L KP+ PKK++YQ+L + + + N+R FK +++
Sbjct: 848 DGPGNPLRHNYEGTLRDLLQ-FFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFRE 906
Query: 118 TPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKK 177
P G ++D+L K VEL +K
Sbjct: 907 EEITLYPDK-HGCVRDLLEECKK---------------AVELGDK--------------- 935
Query: 178 DAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQD 237
SG LRLLEI + KI ++ L AT++ +R+EEIP D
Sbjct: 936 --------------ASGRLRLLEIVSYKIIGVHQEDELLECL--SPATSRTFRIEEIPLD 979
Query: 238 EVSLDPD-ELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKV 296
+V +D + E+LI VAHF K++ FG PFLLRI E F +V +R+ L+IQEKEFEK
Sbjct: 980 QVDIDKENEMLITVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKF 1039
Query: 297 R 297
+
Sbjct: 1040 K 1040
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 81/120 (67%), Gaps = 6/120 (5%)
Query: 327 DELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINN 386
+E+LI VAHF K++ FG PFLLRI E F +V +R+ L+IQEKEFEK+KF ++
Sbjct: 987 NEMLITVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMM 1046
Query: 387 NRITYIEEDSDCPVSINQFR---SNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN 443
R YI ED + V++ F N+SH + WLGLDH NKAPKRSR YLEKAIKI+N
Sbjct: 1047 GRHQYINED-EYEVNLKDFEPQPGNMSHP--RPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1103
>sp|Q4VSI4|UBP7_RAT Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7
PE=1 SV=1
Length = 1103
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 165/301 (54%), Gaps = 53/301 (17%)
Query: 2 FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYK 61
F DL++RV+V FCDKTI ND GF + LS +M Y Q+ VAQ LNTD L+Q FK Q Y+
Sbjct: 788 FRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYR 847
Query: 62 DTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKV----QAYKD 117
D PGNPL HN+EGTL+D+L KP+ PKK++YQ+L + + + N+R FK +++
Sbjct: 848 DGPGNPLRHNYEGTLRDLLQ-FFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFRE 906
Query: 118 TPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKK 177
P G ++D+L K VEL DEA
Sbjct: 907 EEITLYPDK-HGCVRDLLEECKK---------------AVELG------------DEA-- 936
Query: 178 DAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQD 237
SG LRLLEI + KI ++ L AT++ +R+EEIP D
Sbjct: 937 ---------------SGRLRLLEIVSYKIIGVHQEDELLECL--SPATSRTFRIEEIPLD 979
Query: 238 EVSLDPD-ELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKV 296
+V++D + E+LI VAHF K++ FG PFLLRI E F +V +R+ L+IQEKEFEK
Sbjct: 980 QVNIDKENEMLITVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKF 1039
Query: 297 R 297
+
Sbjct: 1040 K 1040
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 81/120 (67%), Gaps = 6/120 (5%)
Query: 327 DELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINN 386
+E+LI VAHF K++ FG PFLLRI E F +V +R+ L+IQEKEFEK+KF ++
Sbjct: 987 NEMLITVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMM 1046
Query: 387 NRITYIEEDSDCPVSINQFR---SNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN 443
R YI ED + V++ F N+SH + WLGLDH NKAPKRSR YLEKAIKI+N
Sbjct: 1047 GRHQYINED-EYEVNLKDFEPQPGNMSHP--RPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1103
>sp|Q6U7I1|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2
SV=1
Length = 1101
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 2 FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYK 61
F DL++RV+V FCDKTI ND GF + LS +M Y Q+ VAQ LNTD L+Q FK Q Y+
Sbjct: 787 FRDLYSRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYR 846
Query: 62 DTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKV----QAYKD 117
D PGNPL HN+EGTL+D+L KP+ PKK++YQ+L + + + N+R FK +++
Sbjct: 847 DGPGNPLRHNYEGTLRDLLQ-FFKPRQPKKLYYQQLKMKITDFENRRSFKCTWLNSQFRE 905
Query: 118 TPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKK 177
P G ++D+L K VVEL K
Sbjct: 906 EEITVYPDK-HGCVRDLLEECKK---------------VVELSEK--------------- 934
Query: 178 DAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQD 237
GSG LRLLEI + KI ++ L AT++ +R+EEIP
Sbjct: 935 --------------GSGKLRLLEIVSYKIIGVHQEDELLECL--SPATSRTFRIEEIPLA 978
Query: 238 EVSLDPD-ELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKV 296
+V +D + E+LI VAHF K++ FG PFLLRI F +V +R+ L+IQEKEFEK
Sbjct: 979 QVDIDKENEMLITVAHFHKEVFGTFGIPFLLRIHQGGHFREVMKRIQTMLDIQEKEFEKF 1038
Query: 297 R 297
+
Sbjct: 1039 K 1039
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 78/120 (65%), Gaps = 7/120 (5%)
Query: 327 DELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINN 386
+E+LI VAHF K++ FG PFLLRI F +V +R+ L+IQEKEFEK+KF ++
Sbjct: 986 NEMLITVAHFHKEVFGTFGIPFLLRIHQGGHFREVMKRIQTMLDIQEKEFEKFKFAIVMM 1045
Query: 387 NRITYIEEDSDCPVSINQFR---SNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN 443
R TY+ ED + V++ F N+SH + WLGLDH NKAPK R YLEKA KI+N
Sbjct: 1046 GRHTYLNED-EYEVNLKDFEPQPGNMSHP--RPWLGLDHFNKAPK-DRYTYLEKAYKIHN 1101
>sp|Q93009|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1
SV=2
Length = 1102
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 2 FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYK 61
F DL++RV+V FCDKTI ND GF + LS +M Y Q+ VAQ LNTD L+Q FK Q Y+
Sbjct: 787 FRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYR 846
Query: 62 DTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKV----QAYKD 117
D PGNPL HN+EGTL+D+L KP+ PKK++YQ+L + + + N+R FK +++
Sbjct: 847 DGPGNPLRHNYEGTLRDLLQ-FFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFRE 905
Query: 118 TPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKK 177
P G ++D+L K VEL K
Sbjct: 906 EEITLYPDK-HGCVRDLLEECKK---------------AVELGEK--------------- 934
Query: 178 DAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQD 237
SG LRLLEI + KI ++ L AT++ +R+EEIP D
Sbjct: 935 --------------ASGKLRLLEIVSYKIIGVHQEDELLECL--SPATSRTFRIEEIPLD 978
Query: 238 EVSLDPD-ELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKV 296
+V +D + E+L+ VAHF K++ FG PFLLRI E F +V +R+ L+IQEKEFEK
Sbjct: 979 QVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKF 1038
Query: 297 R 297
+
Sbjct: 1039 K 1039
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 177/364 (48%), Gaps = 82/364 (22%)
Query: 88 MPKKMHYQKLSIPVVELINKRP-----FKVQAYKDTPGNPLPHNFEGTLKDILAPINKPK 142
+ +M+Y +++ V + +N P FK Q Y+D PGNPL HN+EGTL+D+L KP+
Sbjct: 813 LSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQ-FFKPR 871
Query: 143 MPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEIS 202
PKK++YQ+L + + + N+R F + +L+ ++ I L PD G + LLE
Sbjct: 872 QPKKLYYQQLKMKITDFENRRSF--KCIWLNSQFREEEI---TLYPDKHGC-VRDLLEEC 925
Query: 203 NQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFG 262
+ + G A+ K+ LE I
Sbjct: 926 KKAVE------------LGEKASGKLRLLE---------------------------IVS 946
Query: 263 YPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPS 322
Y + +++E + ++ I+E ++V + +
Sbjct: 947 YKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKE--------------------- 985
Query: 323 KSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFG 382
+E+L+ VAHF K++ FG PFLLRI E F +V +R+ L+IQEKEFEK+KF
Sbjct: 986 ----NEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFA 1041
Query: 383 VINNNRITYIEEDSDCPVSINQFR---SNISHQDYKVWLGLDHINKAPKRSRLNYLEKAI 439
++ R YI ED + V++ F N+SH + WLGLDH NKAPKRSR YLEKAI
Sbjct: 1042 IVMMGRHQYINED-EYEVNLKDFEPQPGNMSHP--RPWLGLDHFNKAPKRSRYTYLEKAI 1098
Query: 440 KIYN 443
KI+N
Sbjct: 1099 KIHN 1102
>sp|Q9VYQ8|UBP7_DROME Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosophila melanogaster
GN=Usp7 PE=1 SV=1
Length = 1129
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 157/308 (50%), Gaps = 57/308 (18%)
Query: 2 FLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK-VQAY 60
FLDL R+E+ F DK N+ FTLELS + Y+QL VA+ LNTD + +Q F + Y
Sbjct: 808 FLDLVYRIEIIFSDKCNPNEPDFTLELSNRYNYDQLANAVAERLNTDPQKLQFFMCINNY 867
Query: 61 KDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKV----QAYK 116
K+T GN +P+ F+GT+KD+++ K K++ YQ+LS+ + EL NK+ FK K
Sbjct: 868 KETAGNAVPYTFKGTIKDLVS-YTKQSSTKRIFYQRLSLSIHELDNKKQFKCVWVSSDLK 926
Query: 117 DTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAK 176
D L N T+K +L K + F + ++
Sbjct: 927 DEKELVLYPNKNDTVKGLLEEAAK---------------------------KISFAENSR 959
Query: 177 KDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMN-------ATTKIY 229
+ LRLL+ISN KI A + +D L N K +
Sbjct: 960 RK-----------------LRLLKISNHKIVAVCKDDIPLDTLLKSNESITTAQGAQKTF 1002
Query: 230 RLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQ 289
R+EE+P +++ L +E LIPVAHF K+++N FG PFL + + E + +K+R+ ++LN+Q
Sbjct: 1003 RIEEVPAEDMQLAENEFLIPVAHFSKELYNSFGIPFLTKARQGEPYGALKQRIQRRLNVQ 1062
Query: 290 EKEFEKVR 297
+KE+E +
Sbjct: 1063 DKEWENYK 1070
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 180/363 (49%), Gaps = 72/363 (19%)
Query: 87 KMPKKMHYQKLSIPVVELINKRPFKVQ------AYKDTPGNPLPHNFEGTLKDILAPINK 140
++ + +Y +L+ V E +N P K+Q YK+T GN +P+ F+GT+KD+++ K
Sbjct: 833 ELSNRYNYDQLANAVAERLNTDPQKLQFFMCINNYKETAGNAVPYTFKGTIKDLVS-YTK 891
Query: 141 PKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLE 200
K++ YQ+LS+ + EL NK+ FK D + EL+ N + LLE
Sbjct: 892 QSSTKRIFYQRLSLSIHELDNKKQFKCVW-----VSSDLKDEKELVLYPNKNDTVKGLLE 946
Query: 201 ISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNI 260
+ +KI+ F N+ K+ RL +I ++ VA + DI
Sbjct: 947 EAAKKIS------------FAENSRRKL-RLLKISNHKI----------VAVCKDDI--- 980
Query: 261 FGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAP 320
P +K NE + + K I+E E +++ +
Sbjct: 981 ---PLDTLLKSNESIT-TAQGAQKTFRIEEVPAEDMQLAE-------------------- 1016
Query: 321 PSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYK 380
+E LIPVAHF K+++N FG PFL + + E + +K+R+ ++LN+Q+KE+E YK
Sbjct: 1017 ------NEFLIPVAHFSKELYNSFGIPFLTKARQGEPYGALKQRIQRRLNVQDKEWENYK 1070
Query: 381 FGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIK 440
F VI+ + +++ PV + +RS S Q + GLDHINK+ KRS LN+ EKAIK
Sbjct: 1071 FCVISMGHNADVNDNT--PVDLEVYRSWTSGQ--LPFFGLDHINKSRKRSSLNFSEKAIK 1126
Query: 441 IYN 443
IYN
Sbjct: 1127 IYN 1129
>sp|Q7JKC3|UBP7_CAEEL Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis elegans
GN=usp-7 PE=2 SV=1
Length = 1135
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 73/119 (61%), Gaps = 12/119 (10%)
Query: 191 GGSGLLRLLEI-----SNQK---ITAELDHSVSMDQ--LFGMNATTKIY-RLEEIPQDEV 239
GGSG RLL+I SNQ+ I E +DQ ++ + ++ ++ RLEE+P DE+
Sbjct: 957 GGSGKFRLLQIGAPPLSNQRVYQIYGENTLISDLDQRTMYKLVSSQALHCRLEEVPIDEL 1016
Query: 240 SLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLN-IQEKEFEKVR 297
+ P E L PV HF ++ +FG F+++I++NE ++V++RL +KLN + + +F K +
Sbjct: 1017 DMSPGEFLCPVVHFDREPTKLFGLSFVIKIRNNELMTEVRDRLRRKLNDVSDADFAKYK 1075
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 76/123 (61%), Gaps = 10/123 (8%)
Query: 325 NPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLN-IQEKEFEKYKFGV 383
+P E L PV HF ++ +FG F+++I++NE ++V++RL +KLN + + +F KYKF +
Sbjct: 1019 SPGEFLCPVVHFDREPTKLFGLSFVIKIRNNELMTEVRDRLRRKLNDVSDADFAKYKFAL 1078
Query: 384 INNNRITY---IEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIK 440
++ +++ IE ++ V++ +N + +V++GLDH K+P + + E AI+
Sbjct: 1079 LSRDKLQLCRTIEFNNGEKVNLADM-ANQTTGVPQVYIGLDH--KSPIQ---HSSEAAIR 1132
Query: 441 IYN 443
I N
Sbjct: 1133 ILN 1135
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 131/307 (42%), Gaps = 72/307 (23%)
Query: 24 FTLELSLKMTYEQLVALVAQHLNTDK-KLIQMFKVQAYKDTPGNPLPHNFEGT--LKDIL 80
F LELS + TY+ +V VA+ L D +++ Y P P P + G L D+L
Sbjct: 817 FVLELSKQHTYDDVVEKVAEKLGLDDPSKLRLTSHNCYSQQP-KPQPIKYRGVDHLSDML 875
Query: 81 APINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINK 140
N+ ++Y+ L IP+ EL + KV + T + HN
Sbjct: 876 VHYNQ--TSDILYYEVLDIPLPELQGLKTLKVAFHHATKEEVVIHNI------------- 920
Query: 141 PKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLE 200
++PK+ V ++IN+ KV EL PD LRLLE
Sbjct: 921 -RLPKQS-------TVGDVINELKTKV----------------ELSHPD----AELRLLE 952
Query: 201 ISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKD---- 256
+ KI S +++ +N R EEIP++E ++ P++ LI V HF K+
Sbjct: 953 VFYHKIYKIFP---STERIENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETGQN 1009
Query: 257 --IHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSA 314
+ N FG PF L I + E ++K R+ KKL++ +++F K W A
Sbjct: 1010 QQVQN-FGEPFFLVIHEGETLEEIKNRIQKKLHVSDEDFAK---------------WKFA 1053
Query: 315 YMANAPP 321
+M+ P
Sbjct: 1054 FMSMGRP 1060
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 17/131 (12%)
Query: 325 NPDELLIPVAHFQKD------IHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEK 378
P++ LI V HF K+ + N FG PF L I + E ++K R+ KKL++ +++F K
Sbjct: 991 GPNDRLILVYHFAKETGQNQQVQN-FGEPFFLVIHEGETLEEIKNRIQKKLHVSDEDFAK 1049
Query: 379 YKFGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRS------RL 432
+KF ++ R Y++ D V N+F+ + ++ +LGL+H + PKR+ R
Sbjct: 1050 WKFAFMSMGRPEYLQ---DTDVVYNRFQRRDVYGAFEQYLGLEHADTTPKRAYAANQNRH 1106
Query: 433 NYLEKAIKIYN 443
Y EK +KIYN
Sbjct: 1107 AY-EKPVKIYN 1116
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 17/131 (12%)
Query: 325 NPDELLIPVAHFQKD------IHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEK 378
P++ LI V HF K+ + N FG PF L I + E ++K R+ KKL++ +++F K
Sbjct: 990 GPNDRLIHVYHFTKEAGQNQQVQN-FGEPFFLVIHEGETLEEIKTRIQKKLHVPDEDFAK 1048
Query: 379 YKFGVINNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRS------RL 432
+KF + R Y+ D V N+F+ + ++ +LGL+HI+ APKR+ R
Sbjct: 1049 WKFASFSMGRPDYL---LDTDVVYNRFQRRDVYGAWEQYLGLEHIDNAPKRAYAANQNRH 1105
Query: 433 NYLEKAIKIYN 443
Y EK +KIYN
Sbjct: 1106 AY-EKPVKIYN 1115
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 126/283 (44%), Gaps = 57/283 (20%)
Query: 24 FTLELSLKMTYEQLVALVAQHLNTDK-KLIQMFKVQAYKDTPGNPLPHNFEGT--LKDIL 80
FT+ELS TY+ +V VA+ L D +++ Y P P P + G L D+L
Sbjct: 816 FTMELSKLHTYDDVVERVAEKLGLDDPSKLRLTSHNCYSQQP-KPQPIKYRGVDHLSDML 874
Query: 81 APINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINK 140
N+ ++Y+ L IP+ EL + KV + T + HN
Sbjct: 875 VHYNQ--TSDILYYEVLDIPLPELQGLKTLKVAFHSATKDEVIIHNI------------- 919
Query: 141 PKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLE 200
++PK+ V ++IN+ KV + +DA LRLLE
Sbjct: 920 -RLPKQS-------TVGDVINELKTKVEL-----SHQDAE---------------LRLLE 951
Query: 201 ISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKD---- 256
+ KI S +++ +N R EEIP++E ++ P++ LI V HF K+
Sbjct: 952 VFFHKIYKIFP---STERIENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKEAGQN 1008
Query: 257 --IHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVR 297
+ N FG PF L I + E ++K R+ KKL++ +++F K +
Sbjct: 1009 QQVQN-FGEPFFLVIHEGETLEEIKTRIQKKLHVPDEDFAKWK 1050
>sp|Q60MK8|UBP7_CAEBR Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis briggsae
GN=usp-7 PE=3 SV=1
Length = 1129
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 12/119 (10%)
Query: 191 GGSGLLRLLEIS-----NQK---ITAELDHSVSMDQ--LFGMNATTKI-YRLEEIPQDEV 239
GGSG RLL+I NQ+ I E V +DQ ++ A + R+EEIP DE+
Sbjct: 953 GGSGKFRLLQIGTSPLNNQRVFQIYNENTAIVDLDQRPVYKQQAQHTLNCRIEEIPHDEL 1012
Query: 240 SLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKL-NIQEKEFEKVR 297
+ E PV H+ ++ +FG F+++I++ E + V++RL +KL ++ + EF K +
Sbjct: 1013 DVAQGEFFCPVVHYDREPTKLFGVSFVIKIRNGELMTDVRDRLRRKLPDVSDAEFAKYK 1071
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Query: 328 ELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKL-NIQEKEFEKYKFGVINN 386
E PV H+ ++ +FG F+++I++ E + V++RL +KL ++ + EF KYKF +++
Sbjct: 1018 EFFCPVVHYDREPTKLFGVSFVIKIRNGELMTDVRDRLRRKLPDVSDAEFAKYKFALLSR 1077
Query: 387 NRITY-IEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN 443
+++ IE ++ V++ +N + +V++GLDH K+P + + E AI+I N
Sbjct: 1078 DKLCRNIEFNAGEKVNLMDM-ANQTTGVPQVYIGLDH--KSPSQ---HSNEAAIRILN 1129
>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2
Length = 1129
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 125/310 (40%), Gaps = 64/310 (20%)
Query: 3 LDLFN----RVEVTF----CDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQM 54
LDL++ RV +TF D T N+ F L L+ Y + VA LN D +Q
Sbjct: 815 LDLYDFMAHRVVITFEPRYSDDT--NNGVFDLVLTTHTNYTDMARAVANKLNVDPNYLQF 872
Query: 55 FKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQA 114
TP + + + + TL++ + M Y+ L I + EL K+ +V
Sbjct: 873 TMAHLPSRTPRSVIRNPSKFTLQNAIPSTYSHNQNVVMFYEVLDITLSELERKQLIRVHF 932
Query: 115 YKDTPGNPLPHNF----EGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQ 170
+ + F EGT++DIL + + K+P
Sbjct: 933 LSNGISHETQMEFYVDKEGTVEDILRQVTQ-KVPLN------------------------ 967
Query: 171 FLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYR 230
+DA+ LRL E+ N +I L + D ++ +N + Y
Sbjct: 968 -----AEDAS--------------RLRLYEVYNHRI---LKSHLPTDGIYDLNEFSTAY- 1004
Query: 231 LEEIPQDE-VSLDPDELL-IPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNI 288
+E P++E + L D+ + I V HF KD+ + PF + E +K+RL K+L
Sbjct: 1005 VEVTPKEEQMQLKTDDAVSIVVQHFFKDLSRLHDIPFYFVLLRGETLKDLKKRLQKRLGY 1064
Query: 289 QEKEFEKVRV 298
+ +F KV++
Sbjct: 1065 NDTQFSKVKL 1074
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 309 NPWPSAYMANAPPSKS----NPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKER 364
N + +AY+ P + D + I V HF KD+ + PF + E +K+R
Sbjct: 998 NEFSTAYVEVTPKEEQMQLKTDDAVSIVVQHFFKDLSRLHDIPFYFVLLRGETLKDLKKR 1057
Query: 365 LAKKLNIQEKEFEKYKFGVINNNRIT---YIEEDSDCPVSINQFRSNISHQDYKVWLGLD 421
L K+L + +F K K V+ Y+ +D + + +S+I LGLD
Sbjct: 1058 LQKRLGYNDTQFSKVKLAVLQAQSFGKPYYLTDDDEVLYGELEPQSHI--------LGLD 1109
Query: 422 H 422
H
Sbjct: 1110 H 1110
>sp|Q09879|UBP5_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp5 PE=3 SV=3
Length = 1108
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 326 PDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVI- 384
P+E ++ V HF KDI I G PF IK E+F K RLA + E F KF V+
Sbjct: 1000 PEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRLAARTQYPESIFSVIKFCVVD 1059
Query: 385 -NNNRITYIEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKIYN 443
+NNR+ Y+ ++ + + L LD K K+ N L++AI++ N
Sbjct: 1060 FDNNRVVYLNDEDITYDVVEKLNGT---------LALDRAKKDSKKP--NILDRAIQMKN 1108
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 232 EEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEK 291
E +P D++ L P+E ++ V HF KDI I G PF IK E+F K RLA + E
Sbjct: 989 EVVPLDQLQLYPEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRLAARTQYPES 1048
Query: 292 EFEKVR 297
F ++
Sbjct: 1049 IFSVIK 1054
>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP15 PE=1 SV=1
Length = 1230
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 247 LIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRV 298
++ V + KD+ N G FL + +E F K K+RL K + +KEF K+++
Sbjct: 1119 IVVVQQYFKDLENRHGISFLFNLIPDETFPKTKDRLHAKFGLGQKEFSKIKL 1170
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 330 LIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGV 383
++ V + KD+ N G FL + +E F K K+RL K + +KEF K K +
Sbjct: 1119 IVVVQQYFKDLENRHGISFLFNLIPDETFPKTKDRLHAKFGLGQKEFSKIKLSI 1172
>sp|Q8BZG5|RRNAD_MOUSE Protein RRNAD1 OS=Mus musculus GN=Rrnad1 PE=2 SV=1
Length = 475
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 36 QLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILAP------INKPKMP 89
QL + + L + ++ + ++ + D+P LPH+++ L + P + P+
Sbjct: 16 QLAVDLTRVLAHYRSILDAYIIEFFTDSPWGTLPHSWQEALDGLNPPQLATLLLGMPRDG 75
Query: 90 KKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNF---EGTLKDILAPINKPKMPKK 146
++M Y+ + P+ L K A+ TPG P F + AP K PKK
Sbjct: 76 EEMRYRSV-WPLTLLALKSTACALAFTRTPGFHTPSEFLENPSQSSRLTAPFRKHVKPKK 134
Query: 147 MH 148
H
Sbjct: 135 QH 136
>sp|P30309|MPI1B_XENLA M-phase inducer phosphatase 1-B OS=Xenopus laevis GN=cdc25-1-b PE=2
SV=1
Length = 550
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 141 PKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQP--ELLGPDNGGSGLLRL 198
P MP+K+ L PV L ++ P +V+ + +++QP E P G+ L +
Sbjct: 286 PSMPEKLDRPMLKRPVRPLDSETPVRVKRR----RSTSSSLQPQEENFQPQRRGTSLKKT 341
Query: 199 LEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEI 234
L + + I+ LD QL G TK+Y L +
Sbjct: 342 LSLCDVDISTVLDEDCGHRQLIG--DFTKVYALPTV 375
>sp|O60079|UBP12_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp12 PE=1 SV=1
Length = 979
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 321 PSKSNPDELLIPVAHFQKDIHNI---------FGYPFLLRIKDNERFSKVKERLAKKLNI 371
P + D++L+PV H D N FG+PF+L++ DNE +++KL +
Sbjct: 586 PYEDGSDDILVPVYHISDDSTNSANSYMSSRDFGHPFVLQLSDNEVTD--ASFISEKLKL 643
Query: 372 QEKEFEKYK 380
+ ++F K
Sbjct: 644 KYQQFTTLK 652
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 228 IYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNI---------FGYPFLLRIKDNERFSKV 278
+Y LE +D D++L+PV H D N FG+PF+L++ DNE
Sbjct: 580 LYELERPYED----GSDDILVPVYHISDDSTNSANSYMSSRDFGHPFVLQLSDNEVTD-- 633
Query: 279 KERLAKKLNIQEKEFEKVR 297
+++KL ++ ++F ++
Sbjct: 634 ASFISEKLKLKYQQFTTLK 652
>sp|P30311|MPIP3_XENLA M-phase inducer phosphatase 3 OS=Xenopus laevis GN=cdc25-3 PE=1
SV=1
Length = 572
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 140 KPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPEL--LGPDNGGSGLLR 197
P MP+K+ L PV L ++ P +V+ + + +QPE P G+ L +
Sbjct: 304 SPSMPEKLDRPMLKRPVRPLNSETPVRVKRR----RSTSSPLQPEEENCQPQRRGTSLKK 359
Query: 198 LLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEI 234
L + + I++ LD QL G +K+Y L +
Sbjct: 360 TLSLCDVDISSVLDEDCGHRQLIG--DFSKVYALPTV 394
>sp|P30308|MPI1A_XENLA M-phase inducer phosphatase 1-A OS=Xenopus laevis GN=cdc25-1-a PE=2
SV=1
Length = 550
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 141 PKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPEL--LGPDNGGSGLLRL 198
P MP+K+ L PV L ++ P +V+ + + +QPE P G+ L +
Sbjct: 286 PSMPEKLDRPMLKRPVRPLDSETPVRVKRR----RSTSSPLQPEEENCQPQRRGTSLKKT 341
Query: 199 LEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEI 234
L + + I+ LD QL G +K+Y L +
Sbjct: 342 LSLCDVDISTVLDEDCGHRQLIG--DFSKVYALPTV 375
>sp|Q3IMY8|RL3_NATPD 50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl3p PE=3 SV=1
Length = 336
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 56 KVQAYKDTPGNPLPHNFEG---TLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKV 112
+ ++ D G P F G + ++A ++P P++ + + + VVE R V
Sbjct: 26 RFNSWPDDEGQPGLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAV 85
Query: 113 QAYKDTP 119
+AY+DTP
Sbjct: 86 RAYEDTP 92
>sp|P30310|MPIP2_XENLA M-phase inducer phosphatase 2 OS=Xenopus laevis GN=cdc25-2 PE=2
SV=1
Length = 599
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 140 KPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPEL--LGPDNGGSGLLR 197
P MP+K+ L PV L ++ P +V+ + + +QPE P G+ L +
Sbjct: 334 SPSMPEKLDRPMLKRPVRPLDSETPVRVKRR----RSTSSPLQPEEENCQPQRRGTSLKK 389
Query: 198 LLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEI 234
L + + I+ LD QL G +K+Y L +
Sbjct: 390 TLSLCDVDISTVLDEDCGHRQLIG--DFSKVYALPTV 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,315,215
Number of Sequences: 539616
Number of extensions: 8100382
Number of successful extensions: 20879
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 20787
Number of HSP's gapped (non-prelim): 76
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)