Query psy17539
Match_columns 443
No_of_seqs 171 out of 316
Neff 6.2
Searched_HMMs 46136
Date Sat Aug 17 01:07:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14533 USP7_C2: Ubiquitin-sp 100.0 1.3E-50 2.9E-55 386.7 17.1 207 90-429 1-213 (213)
2 COG5077 Ubiquitin carboxyl-ter 100.0 4.7E-40 1E-44 347.0 19.1 300 1-441 780-1088(1089)
3 PF12436 USP7_ICP0_bdg: ICP0-b 99.8 1.4E-19 3.1E-24 176.9 6.2 80 1-80 169-249 (249)
4 KOG1863|consensus 99.8 4.4E-20 9.6E-25 211.8 -0.4 322 1-443 757-1093(1093)
5 PF14533 USP7_C2: Ubiquitin-sp 99.4 4E-13 8.6E-18 128.7 3.8 56 246-301 116-171 (213)
6 COG5077 Ubiquitin carboxyl-ter 98.6 1.1E-08 2.5E-13 110.4 1.4 147 90-322 810-973 (1089)
7 cd06406 PB1_P67 A PB1 domain i 89.6 0.91 2E-05 37.2 5.5 62 9-81 5-66 (80)
8 PF12436 USP7_ICP0_bdg: ICP0-b 88.2 0.078 1.7E-06 52.2 -1.9 107 25-135 88-249 (249)
9 cd01791 Ubl5 UBL5 ubiquitin-li 79.9 14 0.00031 29.3 8.1 59 9-79 2-60 (73)
10 cd01792 ISG15_repeat1 ISG15 ub 73.5 18 0.00038 29.0 7.1 61 9-79 3-63 (80)
11 KOG1863|consensus 73.1 0.85 1.8E-05 54.0 -1.0 74 227-300 954-1029(1093)
12 smart00666 PB1 PB1 domain. Pho 71.9 13 0.00028 29.5 6.0 56 22-81 11-66 (81)
13 PF14560 Ubiquitin_2: Ubiquiti 71.9 15 0.00033 29.8 6.5 48 9-57 2-49 (87)
14 PF11976 Rad60-SLD: Ubiquitin- 69.6 9.2 0.0002 29.6 4.5 37 343-381 8-44 (72)
15 smart00213 UBQ Ubiquitin homol 68.8 16 0.00034 27.0 5.5 34 23-56 11-44 (64)
16 cd06411 PB1_p51 The PB1 domain 66.6 15 0.00032 30.1 5.1 56 24-81 9-64 (78)
17 cd01812 BAG1_N Ubiquitin-like 65.1 15 0.00033 28.1 5.0 35 22-56 10-44 (71)
18 cd01769 UBL Ubiquitin-like dom 63.9 10 0.00022 28.5 3.7 31 345-375 7-37 (69)
19 cd01813 UBP_N UBP ubiquitin pr 61.6 10 0.00022 30.2 3.4 38 343-383 7-44 (74)
20 cd01806 Nedd8 Nebb8-like ubiq 61.5 26 0.00057 27.0 5.8 50 21-79 10-59 (76)
21 cd01799 Hoil1_N Ubiquitin-like 61.4 15 0.00032 29.4 4.3 36 340-375 7-42 (75)
22 cd01804 midnolin_N Ubiquitin-l 61.1 26 0.00057 27.9 5.8 43 10-55 3-45 (78)
23 cd01807 GDX_N ubiquitin-like d 60.4 12 0.00025 29.4 3.6 45 344-395 9-53 (74)
24 PF00240 ubiquitin: Ubiquitin 60.3 16 0.00036 27.8 4.3 49 22-79 6-54 (69)
25 cd01796 DDI1_N DNA damage indu 57.7 19 0.00041 28.2 4.3 37 20-56 8-44 (71)
26 PF11543 UN_NPL4: Nuclear pore 55.9 16 0.00035 29.7 3.7 63 8-78 4-66 (80)
27 PTZ00044 ubiquitin; Provisiona 55.8 21 0.00045 27.9 4.3 50 21-79 10-59 (76)
28 cd05992 PB1 The PB1 domain is 55.6 48 0.001 25.9 6.4 56 22-81 10-66 (81)
29 cd01813 UBP_N UBP ubiquitin pr 54.4 25 0.00053 28.0 4.5 52 22-79 10-61 (74)
30 cd01809 Scythe_N Ubiquitin-lik 53.9 40 0.00086 25.7 5.6 36 21-56 10-45 (72)
31 cd00196 UBQ Ubiquitin-like pro 53.8 19 0.00041 24.8 3.5 32 344-375 6-37 (69)
32 PF00240 ubiquitin: Ubiquitin 53.1 19 0.00041 27.4 3.6 44 345-395 5-48 (69)
33 cd01803 Ubiquitin Ubiquitin. U 51.8 26 0.00057 27.0 4.3 36 21-56 10-45 (76)
34 cd01803 Ubiquitin Ubiquitin. U 51.7 21 0.00045 27.6 3.6 30 345-374 10-39 (76)
35 cd01790 Herp_N Homocysteine-re 51.0 25 0.00054 28.7 4.0 42 265-311 16-58 (79)
36 COG5560 UBP12 Ubiquitin C-term 50.7 57 0.0012 36.6 7.8 87 259-348 464-563 (823)
37 cd01792 ISG15_repeat1 ISG15 ub 49.9 34 0.00073 27.3 4.7 46 345-395 12-57 (80)
38 PTZ00044 ubiquitin; Provisiona 49.1 24 0.00053 27.5 3.7 31 345-375 10-40 (76)
39 cd01798 parkin_N amino-termina 49.0 22 0.00048 27.4 3.4 44 345-395 8-51 (70)
40 cd01769 UBL Ubiquitin-like dom 48.9 34 0.00074 25.4 4.4 35 21-55 7-41 (69)
41 cd06407 PB1_NLP A PB1 domain i 47.4 52 0.0011 26.9 5.4 53 22-78 10-63 (82)
42 smart00213 UBQ Ubiquitin homol 45.1 31 0.00068 25.3 3.6 28 347-374 11-38 (64)
43 cd06396 PB1_NBR1 The PB1 domai 45.0 45 0.00097 27.4 4.6 36 349-397 13-50 (81)
44 cd01805 RAD23_N Ubiquitin-like 45.0 42 0.00091 26.1 4.5 50 21-79 10-61 (77)
45 cd01796 DDI1_N DNA damage indu 44.9 30 0.00066 27.0 3.6 44 345-395 9-52 (71)
46 cd01794 DC_UbP_C dendritic cel 44.6 33 0.00073 26.9 3.8 46 343-395 6-51 (70)
47 cd01799 Hoil1_N Ubiquitin-like 44.6 55 0.0012 26.1 5.1 35 20-54 11-45 (75)
48 cd01806 Nedd8 Nebb8-like ubiq 44.5 31 0.00067 26.6 3.6 31 345-375 10-40 (76)
49 cd01791 Ubl5 UBL5 ubiquitin-li 43.6 34 0.00073 27.2 3.7 44 345-395 11-54 (73)
50 cd01794 DC_UbP_C dendritic cel 43.6 42 0.0009 26.3 4.2 51 20-79 7-57 (70)
51 cd01809 Scythe_N Ubiquitin-lik 42.8 39 0.00084 25.7 3.9 30 345-374 10-39 (72)
52 cd06409 PB1_MUG70 The MUG70 pr 42.3 47 0.001 27.6 4.4 42 348-397 13-54 (86)
53 cd01807 GDX_N ubiquitin-like d 41.9 44 0.00096 26.1 4.1 50 21-79 10-59 (74)
54 PF11126 Phage_DsbA: Transcrip 40.5 11 0.00023 30.0 0.4 25 355-379 16-40 (69)
55 cd01798 parkin_N amino-termina 40.3 50 0.0011 25.4 4.2 50 21-79 8-57 (70)
56 cd01812 BAG1_N Ubiquitin-like 40.3 33 0.00071 26.2 3.1 31 345-375 9-39 (71)
57 cd01612 APG12_C Ubiquitin-like 40.1 2.1E+02 0.0045 23.6 8.0 67 8-81 1-68 (87)
58 cd05992 PB1 The PB1 domain is 39.7 83 0.0018 24.6 5.5 29 345-373 9-38 (81)
59 cd01763 Sumo Small ubiquitin-r 39.1 94 0.002 25.2 5.8 50 21-79 21-70 (87)
60 cd01800 SF3a120_C Ubiquitin-li 39.0 49 0.0011 26.1 4.0 36 21-56 7-42 (76)
61 cd01808 hPLIC_N Ubiquitin-like 38.3 92 0.002 24.0 5.4 47 24-79 12-58 (71)
62 cd01810 ISG15_repeat2 ISG15 ub 37.7 44 0.00096 26.1 3.5 45 344-395 7-51 (74)
63 cd06407 PB1_NLP A PB1 domain i 36.6 43 0.00094 27.3 3.4 43 349-402 13-55 (82)
64 cd01793 Fubi Fubi ubiquitin-li 35.9 42 0.00092 26.2 3.2 42 347-395 10-51 (74)
65 cd06406 PB1_P67 A PB1 domain i 35.7 50 0.0011 27.1 3.5 34 348-384 13-46 (80)
66 cd01804 midnolin_N Ubiquitin-l 35.6 48 0.001 26.4 3.5 30 345-374 11-40 (78)
67 cd08010 yceG_like proteins sim 34.6 65 0.0014 31.7 4.9 33 346-378 27-59 (245)
68 PF11543 UN_NPL4: Nuclear pore 34.3 48 0.0011 26.9 3.3 29 348-376 16-44 (80)
69 cd01789 Alp11_N Ubiquitin-like 34.3 66 0.0014 26.1 4.1 34 24-57 15-48 (84)
70 cd01800 SF3a120_C Ubiquitin-li 34.0 54 0.0012 25.8 3.5 31 345-375 7-37 (76)
71 cd01810 ISG15_repeat2 ISG15 ub 33.8 74 0.0016 24.8 4.3 51 20-79 7-57 (74)
72 cd06408 PB1_NoxR The PB1 domai 33.6 1.2E+02 0.0025 25.3 5.4 62 8-81 4-65 (86)
73 cd01793 Fubi Fubi ubiquitin-li 32.8 70 0.0015 25.0 3.9 49 22-79 9-57 (74)
74 cd01802 AN1_N ubiquitin-like d 32.6 61 0.0013 27.5 3.8 45 344-395 36-80 (103)
75 cd00196 UBQ Ubiquitin-like pro 31.4 88 0.0019 21.2 4.0 37 21-57 7-43 (69)
76 cd06396 PB1_NBR1 The PB1 domai 31.2 85 0.0018 25.8 4.2 52 24-81 14-65 (81)
77 PF02991 Atg8: Autophagy prote 30.2 2.5E+02 0.0054 24.0 7.1 67 7-81 15-84 (104)
78 smart00666 PB1 PB1 domain. Pho 30.0 71 0.0015 25.1 3.6 28 346-373 11-38 (81)
79 PHA02599 dsbA double-stranded 29.6 23 0.0005 29.5 0.7 25 355-379 38-62 (91)
80 PF11976 Rad60-SLD: Ubiquitin- 28.9 1.2E+02 0.0026 23.1 4.7 34 23-56 12-46 (72)
81 cd01763 Sumo Small ubiquitin-r 27.3 85 0.0018 25.5 3.7 37 344-383 20-56 (87)
82 TIGR03180 UraD_2 OHCU decarbox 27.2 70 0.0015 29.4 3.5 28 342-370 105-132 (158)
83 cd06398 PB1_Joka2 The PB1 doma 26.9 1.1E+02 0.0024 25.5 4.3 54 24-81 14-71 (91)
84 KOG0006|consensus 26.8 1.3E+02 0.0027 31.1 5.4 47 9-57 3-49 (446)
85 COG1163 DRG Predicted GTPase [ 26.3 3.4E+02 0.0073 28.4 8.4 64 270-386 272-338 (365)
86 cd01617 DCX Ubiquitin-like dom 26.1 2.6E+02 0.0057 22.4 6.3 47 11-57 3-52 (80)
87 COG5560 UBP12 Ubiquitin C-term 25.9 3.8E+02 0.0083 30.4 9.2 87 162-270 476-569 (823)
88 cd01768 RA RA (Ras-associating 25.8 1.3E+02 0.0027 24.0 4.4 34 267-301 17-50 (87)
89 PF00564 PB1: PB1 domain; Int 24.3 1.1E+02 0.0025 23.9 3.9 53 25-81 15-67 (84)
90 cd01612 APG12_C Ubiquitin-like 24.3 96 0.0021 25.6 3.4 26 266-291 19-44 (87)
91 PF00564 PB1: PB1 domain; Int 23.6 89 0.0019 24.6 3.1 24 349-372 15-38 (84)
92 cd01797 NIRF_N amino-terminal 23.5 92 0.002 24.9 3.1 25 348-372 14-39 (78)
93 cd06410 PB1_UP2 Uncharacterize 23.4 1.8E+02 0.0038 24.6 5.0 56 22-81 23-80 (97)
94 PF14560 Ubiquitin_2: Ubiquiti 23.2 1E+02 0.0023 24.8 3.5 29 264-292 15-43 (87)
95 smart00314 RA Ras association 22.9 1.5E+02 0.0033 23.7 4.4 34 267-301 20-53 (90)
96 PTZ00397 macrophage migration 22.3 93 0.002 26.5 3.2 25 33-57 77-101 (116)
97 PRK01964 4-oxalocrotonate taut 22.1 97 0.0021 23.4 2.9 26 33-58 20-45 (64)
98 cd01811 OASL_repeat1 2'-5' oli 21.7 1.3E+02 0.0028 24.5 3.5 48 344-395 9-57 (80)
99 PF02991 Atg8: Autophagy prote 21.7 96 0.0021 26.6 3.1 27 265-291 35-61 (104)
100 TIGR03180 UraD_2 OHCU decarbox 21.1 99 0.0022 28.4 3.2 38 251-289 97-134 (158)
101 cd01802 AN1_N ubiquitin-like d 20.8 3.1E+02 0.0067 23.2 6.0 50 21-79 37-86 (103)
102 cd01808 hPLIC_N Ubiquitin-like 20.8 1.3E+02 0.0029 23.1 3.5 42 347-395 11-52 (71)
103 PTZ00380 microtubule-associate 20.7 4.8E+02 0.01 23.1 7.2 66 7-81 26-91 (121)
104 cd01805 RAD23_N Ubiquitin-like 20.7 1.4E+02 0.003 23.1 3.7 27 345-371 10-36 (77)
No 1
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=100.00 E-value=1.3e-50 Score=386.74 Aligned_cols=207 Identities=43% Similarity=0.695 Sum_probs=137.8
Q ss_pred ceeeeeeccchhhhhhccCceEEEEecCCCCCCCCCCcccCeeeeeeccCCCCCCCcceeeeeccchhhhcccCCceeeH
Q psy17539 90 KKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRT 169 (443)
Q Consensus 90 ~~l~YE~L~~~V~E~e~~~~~kv~~~~~~P~~~ik~~~~~~l~~iL~p~~~~~~~~~l~Yq~l~~~i~ele~K~~~tV~~ 169 (443)
+.+|||+|++||+|+|+++++||+|+ +++++ +++.+++++| |++ || +
T Consensus 1 ~~l~YevL~i~l~ElE~kk~~kv~w~----~~~~~---~~~~~~~~vp------------------------k~~-tV-~ 47 (213)
T PF14533_consen 1 DTLYYEVLDIPLKELENKKQFKVTWL----NDGLK---EEQEYELLVP------------------------KTG-TV-S 47 (213)
T ss_dssp -EEEEEE-SS-HHHHHSB--EEEEEE-----TTS----EE-EEEE--B------------------------TT--BH-H
T ss_pred CceEEEecCCCHHHHhCceEEEEEEE----CCCCc---ceeEEEEEEC------------------------CCC-CH-H
Confidence 47999999999999999999999999 66666 4667889887 898 99 9
Q ss_pred HHHHHhhcccccCccccCCCCCCCCceEEEEEecceeeeecCccccccccccCCCcceeEEEeecCccccCCC-CCCeEE
Q psy17539 170 QFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLD-PDELLI 248 (443)
Q Consensus 170 dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~~l~~~~~i~~~~~~~~~~~~~~~E~ip~de~~~~-~~e~lv 248 (443)
|+++++++++++++ +++++||||++++||++++++.+.+++++ ++.. .+|+|+||+||+++. ++
T Consensus 48 Dll~~l~~k~~~~~-------~~~~~lrl~ev~~~ki~~~~~~d~~i~~l---~~~~-~~r~E~ip~ee~~~~~~~---- 112 (213)
T PF14533_consen 48 DLLEELQKKVGFSE-------EGTGKLRLWEVSNHKIYKILSEDEPISSL---NDYI-TLRIEEIPEEELNLDDES---- 112 (213)
T ss_dssp HHHHHHHTT----T-------T----EEEEEEETTEEEEEE-TTSBGGGS-----TT-EEEEEE--GGGSS--TT-----
T ss_pred HHHHHHHHHcCCCc-------CCcCcEEEEEeECCEEEeecCCCCchhhc---cCcc-eeeeecCChHHhhccccc----
Confidence 99999999999876 78899999999999999999999999988 4444 578999999988764 20
Q ss_pred eeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCcccccccCCCCCCCCCC
Q psy17539 249 PVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDE 328 (443)
Q Consensus 249 ~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~~E~ip~ee~~~~~ 328 (443)
+++
T Consensus 113 -----------------------------------------------------------------------------~~~ 115 (213)
T PF14533_consen 113 -----------------------------------------------------------------------------EGE 115 (213)
T ss_dssp ------------------------------------------------------------------------------TE
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 145
Q ss_pred ceEeEEEeecCCcccCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCc---ceecCCCCC--cccccc
Q psy17539 329 LLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNR---ITYIEEDSD--CPVSIN 403 (443)
Q Consensus 329 ~lI~vfHF~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~---~~yl~dd~d--~~~~l~ 403 (443)
++|+||||+|+++++|||||+|+|+|||+|++||+|||+||||++|||+|||||||++++ |+|++|| | ++++..
T Consensus 116 ~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~-~~~il~~~~ 194 (213)
T PF14533_consen 116 KLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDD-DDLILFDEI 194 (213)
T ss_dssp EEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT--T----GGG
T ss_pred eEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceecccc-chhhhhhhh
Confidence 788999999999999999999999999999999999999999999999999999998754 6999997 5 555541
Q ss_pred cccccccCCCCcceeeecCCCCCCCC
Q psy17539 404 QFRSNISHQDYKVWLGLDHINKAPKR 429 (443)
Q Consensus 404 ~~~~~~~~~~~~~~LGLDH~dk~~k~ 429 (443)
+. ..+.||||||+||+|||
T Consensus 195 -~~------~~~~~LgLdH~dk~~kr 213 (213)
T PF14533_consen 195 -FN------PDDPWLGLDHPDKSPKR 213 (213)
T ss_dssp -TS-------S--EEEEE--------
T ss_pred -cC------ccCCEEEEeCCCCCCCC
Confidence 12 11469999999999987
No 2
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-40 Score=346.99 Aligned_cols=300 Identities=21% Similarity=0.245 Sum_probs=249.6
Q ss_pred CccccccceEEEEEeCCCCC--CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHH
Q psy17539 1 MFLDLFNRVEVTFCDKTILN--DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKD 78 (443)
Q Consensus 1 y~~~L~nRv~V~F~~~~~~~--~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d 78 (443)
.||||++||.|.|+ +.... ...|++||+....|++||..||..++++|.+||+++++..+..++..+++.++.+|.+
T Consensus 780 lydfl~~rVlv~fr-rfsd~~~~~vfefll~~~~~Yddlcr~vs~~~hv~p~ylr~~~~~~l~~~~r~vv~s~s~fll~e 858 (1089)
T COG5077 780 LYDFLQGRVLVAFR-RFSDEYRENVFEFLLFIGDFYDDLCRNVSCKLHVTPFYLRGTKSTELEDRIRRVVGSKSIFLLKE 858 (1089)
T ss_pred HHHhhcCcEEEEEE-eeccccccceEEEeeecCccHHHHHHHhccccCCChhHheeeeccCcccccceeeCCchHhHHHH
Confidence 48999999999999 44322 2459999999999999999999999999999999999988888999999988999999
Q ss_pred hcCCCCCCCCCceeeeeeccchhhhhhccCceEEEEecCCCCCCCCCCcccCeeeeeeccCCCCCCCcceeeeeccchhh
Q psy17539 79 ILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVE 158 (443)
Q Consensus 79 ~l~~~~~~~~~~~l~YE~L~~~V~E~e~~~~~kv~~~~~~P~~~ik~~~~~~l~~iL~p~~~~~~~~~l~Yq~l~~~i~e 158 (443)
+|.++..-+++..++||+|++||+|+|.++++++.|+ ++++. +.++.++.+
T Consensus 859 al~ss~e~~q~p~~~yevldvpLseler~r~irl~fl----sngy~---h~~l~ef~v---------------------- 909 (1089)
T COG5077 859 ALSSSSEFRQAPVDFYEVLDVPLSELERKRLIRLCFL----SNGYQ---HVYLAEFYV---------------------- 909 (1089)
T ss_pred HhcchhhhccCCcceeeecCccHHHHhcccceEEEEe----ecCce---EEEEEEEee----------------------
Confidence 9997766667789999999999999999999999999 66665 244444443
Q ss_pred hcccCCceeeHHHHHHhhcccccCccccCCCCCCCCceEEEEEecceeeeecCccccccccccCCCcceeEEEeecCccc
Q psy17539 159 LINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDE 238 (443)
Q Consensus 159 le~K~~~tV~~dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~~l~~~~~i~~~~~~~~~~~~~~~E~ip~de 238 (443)
.|.+ ++ .|++..+..++++++ +...++|+|++.++++.+.+.....+.++ +..+.+| .|.+|.++
T Consensus 910 --~kdy-t~-~d~l~~v~~Kvg~td-------e~kk~vlv~e~~n~r~~r~hsl~tl~~d~---n~~stly-gev~pleq 974 (1089)
T COG5077 910 --EKDY-TA-VDHLHIVVTKVGCTD-------ELKKSVLVYEVVNLRPVRGHSLKTLIIDD---NVRSTLY-GEVFPLEQ 974 (1089)
T ss_pred --cccc-cH-HHHHHHHHhhcCCcH-------hhhhcEEEEEEeecceecccCccceEEec---cccceee-eEecchhh
Confidence 3888 99 999999999999887 67789999999999999998888877665 3333333 55544332
Q ss_pred cCCCCCCeEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCccccccc
Q psy17539 239 VSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMAN 318 (443)
Q Consensus 239 ~~~~~~e~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~~E~ 318 (443)
+...
T Consensus 975 ~ql~---------------------------------------------------------------------------- 978 (1089)
T COG5077 975 EQLT---------------------------------------------------------------------------- 978 (1089)
T ss_pred hccc----------------------------------------------------------------------------
Confidence 2222
Q ss_pred CCCCCCCCCCceEeEEEeecCCcccCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEc---C----ccee
Q psy17539 319 APPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINN---N----RITY 391 (443)
Q Consensus 319 ip~ee~~~~~~lI~vfHF~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~---~----~~~y 391 (443)
.++..|.|.||+||..+.|||||.|+|.++|+|.+||.||++|+|.++|+|+|+|+++... + +++|
T Consensus 979 -------t~e~~VvVqhffkdl~r~hgi~f~f~i~p~etf~dtk~rl~arfg~~~k~Fskikl~vg~s~~~g~~~~~~~~ 1051 (1089)
T COG5077 979 -------TNEMCVVVQHFFKDLIRTHGIPFMFVIVPFETFLDTKVRLVARFGYKYKLFSKIKLFVGKSYTDGELDWPMSY 1051 (1089)
T ss_pred -------cCCcEEEEeHHHHHHHHhcCCceEEEeccccccchhHHHHHHHhCCCceeeeeEEEEEeeccccccccccccc
Confidence 4567788899999999999999999999999999999999999999999999999999943 3 6799
Q ss_pred cCCCCCcccccccccccccCCCCcceeeecCCCCCCCCccCcCCccceEe
Q psy17539 392 IEEDSDCPVSINQFRSNISHQDYKVWLGLDHINKAPKRSRLNYLEKAIKI 441 (443)
Q Consensus 392 l~dd~d~~~~l~~~~~~~~~~~~~~~LGLDH~dk~~k~~~~~~~ekaI~I 441 (443)
++|| |+++++. . ..+..| ||||+|.++. +..++||.|
T Consensus 1052 fnDe-dilyd~i--e------~l~~il-lDhp~~~~~~---~~~Drai~m 1088 (1089)
T COG5077 1052 FNDE-DILYDLI--E------RLDYIL-LDHPDRLRSH---SSYDRAIIM 1088 (1089)
T ss_pred ccch-hhhhhhh--h------ccCcee-ecCcccccCc---cccccceec
Confidence 9999 8888872 2 124556 9999999555 468999976
No 3
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=99.78 E-value=1.4e-19 Score=176.92 Aligned_cols=80 Identities=49% Similarity=0.680 Sum_probs=60.0
Q ss_pred CccccccceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCC-CccCCCCCcHHHh
Q psy17539 1 MFLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGN-PLPHNFEGTLKDI 79 (443)
Q Consensus 1 y~~~L~nRv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~-~i~~~~~~~L~d~ 79 (443)
||+||+|||.|+|+++..+++++|+||||++|||+|||++||++||+||++||||+++++++.|+. +++++.++||+||
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~~~~~P~~~~~r~~~~~tL~di 248 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNPYSGKPKSQPIRYSDNGTLKDI 248 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---TTS-S---SB--TT--S-HHHH
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEeccCCCCCCCccccCCCCCcHHHh
Confidence 799999999999999999988899999999999999999999999999999999999999999996 6777999999999
Q ss_pred c
Q psy17539 80 L 80 (443)
Q Consensus 80 l 80 (443)
|
T Consensus 249 l 249 (249)
T PF12436_consen 249 L 249 (249)
T ss_dssp S
T ss_pred C
Confidence 7
No 4
>KOG1863|consensus
Probab=99.76 E-value=4.4e-20 Score=211.85 Aligned_cols=322 Identities=19% Similarity=0.160 Sum_probs=225.1
Q ss_pred CccccccceEEEEEeCCCCCCC-CeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccC---CCCCCCCccCCCCCcH
Q psy17539 1 MFLDLFNRVEVTFCDKTILNDQ-GFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAY---KDTPGNPLPHNFEGTL 76 (443)
Q Consensus 1 y~~~L~nRv~V~F~~~~~~~~~-~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~---~~~p~~~i~~~~~~~L 76 (443)
|++++.+|+.++|+....+.++ .|+++++..++|.+++..|+.++|++|..++.++.++- ...++..........+
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~v~~~l~~~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 836 (1093)
T KOG1863|consen 757 FLENVENRTLQRFRKVSSEIEENSFVLGRQQRVTECILAVLVQLALGKDPISIDSDRAEYDLEKIRFNGTVKLSQVLLDA 836 (1093)
T ss_pred HHHHHHHHHHHHHhcccccccccccccchhhhhhhhHHHHHHHHHhcCCchhccccccCCchhhccccCcceeecccccc
Confidence 5788999999999998776666 89999999999999999999999999999999988652 2223333333334455
Q ss_pred HHhcCCCCCCCCCceeeeeeccchhhhhhccCceEEEEecCCCCCCCCCCcccCeeeeeeccCCCCCCCcceeeeeccch
Q psy17539 77 KDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPV 156 (443)
Q Consensus 77 ~d~l~~~~~~~~~~~l~YE~L~~~V~E~e~~~~~kv~~~~~~P~~~ik~~~~~~l~~iL~p~~~~~~~~~l~Yq~l~~~i 156 (443)
.+++........+...+|.++..++.|+..+++++..|..+ ...+ .....+.+
T Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~----~~~~---~~~~~~~~-------------------- 889 (1093)
T KOG1863|consen 837 TQLVRDPRERFVSLLKVQFVLPKTIVELLDLKYFKDEWLVD----MENG---VEIMTLAV-------------------- 889 (1093)
T ss_pred ccccccccccccccceecccCCcceeccccccccchhhhcc----cccc---chhhheec--------------------
Confidence 55554333333344556669999999999999999999943 2221 11122222
Q ss_pred hhhcccCCceeeH-HHHHHhhcccccCccccCCCCCCCCceEEEEEecceeeeecCccccccccccCCCcceeEEEeecC
Q psy17539 157 VELINKRPFKVRT-QFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIP 235 (443)
Q Consensus 157 ~ele~K~~~tV~~-dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~~l~~~~~i~~~~~~~~~~~~~~~E~ip 235 (443)
+|.+ +| . |++.+..+++.+++ ..+..+|+|++.+.++++.......+..+. .....
T Consensus 890 ----~k~~-~i-~~d~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~---~~~~~------- 946 (1093)
T KOG1863|consen 890 ----TKLG-TI-LPDILREVYDRVPLDP-------FKSDAFRLFEVTSMKLYKETSYQKLLEELN---QSYQS------- 946 (1093)
T ss_pred ----cccc-hh-hHHHHHHHHhhcccCc-------ccccceeEEeecchHHHHhccchhHHHHHh---HHHhh-------
Confidence 4788 88 7 99999999998776 778899999999999887766555554331 00000
Q ss_pred ccccCCCCCCeEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCcccc
Q psy17539 236 QDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAY 315 (443)
Q Consensus 236 ~de~~~~~~e~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~ 315 (443)
| +.+ ..+ .+.+
T Consensus 947 -----------------------------~--------------~~~-----~~~---------------------~~~r 957 (1093)
T KOG1863|consen 947 -----------------------------F--------------ELL-----LRD---------------------LFLR 957 (1093)
T ss_pred -----------------------------H--------------Hhh-----hcc---------------------cccc
Confidence 0 000 000 1133
Q ss_pred cccCCCCCCC---CCCceEeEEEeecCCcccCCCceEEEecCCCchHHHHHHHHHHhC-CCcccccceeEEEEEcCcce-
Q psy17539 316 MANAPPSKSN---PDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLN-IQEKEFEKYKFGVINNNRIT- 390 (443)
Q Consensus 316 ~E~ip~ee~~---~~~~lI~vfHF~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlg-i~~kef~K~Kfalv~~~~~~- 390 (443)
.|++|.+++. ...+++.|.||.|+..+.||+||.+++.+||++.++|.|++.+++ ++++.|++||+|.+..+...
T Consensus 958 ~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~ 1037 (1093)
T KOG1863|consen 958 GESVPLLEILSSKGAPKLELVIHFSKELVQNIGNELNLLIVQGESLKENKDHLFDDLKEVSDELFSVFKHAGASVGHYWK 1037 (1093)
T ss_pred cccCcHHHHhhcccccceeehhhcchhhhhhcchhhHHHhccchhHHHHHHHHHHHHHHhhHHHhHHHhhhhhhhccchh
Confidence 4455555443 345899999999999889999999999999999999999999999 99999999999997655543
Q ss_pred ecCCCCCcccccccccc-cccCCCCcceeeecCCCCCCCCccCc----CCccceEecC
Q psy17539 391 YIEEDSDCPVSINQFRS-NISHQDYKVWLGLDHINKAPKRSRLN----YLEKAIKIYN 443 (443)
Q Consensus 391 yl~dd~d~~~~l~~~~~-~~~~~~~~~~LGLDH~dk~~k~~~~~----~~ekaI~I~n 443 (443)
|+.+. -.+...+-.. .+....+..++||||.+++|++.++. ..+++|+|+|
T Consensus 1038 ~~~~~--~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~n 1093 (1093)
T KOG1863|consen 1038 YIQDF--NLIYRKDNDEEIDVVSEPEVFLDLSGNNANPYFLSYLRQGQIIEEPVKIEN 1093 (1093)
T ss_pred hhhcc--ccccccccchhhhcccCcccccccCCCCCCchhhhhhhcccchhhhhhccC
Confidence 33331 1111100010 01123457899999999999997432 2589999987
No 5
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=99.35 E-value=4e-13 Score=128.73 Aligned_cols=56 Identities=48% Similarity=0.737 Sum_probs=47.8
Q ss_pred eEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEee
Q psy17539 246 LLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDK 301 (443)
Q Consensus 246 ~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~ 301 (443)
++|+|+||+|+++++|||||.|++.+||+|.+|++||++|+|+++++|+|+||+-+
T Consensus 116 ~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv 171 (213)
T PF14533_consen 116 KLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIV 171 (213)
T ss_dssp EEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEE
T ss_pred eEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999986
No 6
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.1e-08 Score=110.41 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=109.2
Q ss_pred ceeeeeeccchhhhhhccCceEEEEe-----cCCCCCCCCCCcccCeeeeeeccCCCCCCCcceeeeeccchhhhcccCC
Q psy17539 90 KKMHYQKLSIPVVELINKRPFKVQAY-----KDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRP 164 (443)
Q Consensus 90 ~~l~YE~L~~~V~E~e~~~~~kv~~~-----~~~P~~~ik~~~~~~l~~iL~p~~~~~~~~~l~Yq~l~~~i~ele~K~~ 164 (443)
....|+.|+..|+...+.+|..++.. +++|+..++....-++.+.|..++..++...+|||.|++|+.||+.|+.
T Consensus 810 ~~~~Yddlcr~vs~~~hv~p~ylr~~~~~~l~~~~r~vv~s~s~fll~eal~ss~e~~q~p~~~yevldvpLseler~r~ 889 (1089)
T COG5077 810 IGDFYDDLCRNVSCKLHVTPFYLRGTKSTELEDRIRRVVGSKSIFLLKEALSSSSEFRQAPVDFYEVLDVPLSELERKRL 889 (1089)
T ss_pred cCccHHHHHHHhccccCCChhHheeeeccCcccccceeeCCchHhHHHHHhcchhhhccCCcceeeecCccHHHHhcccc
Confidence 35679999999999999888665544 3445555554444567777777777888899999999999999999998
Q ss_pred ceeeHHHHHHhhcccccCccccCCCCCCCCceEEEEEecceeeeecCccccccccccCCCcceeEEEeecCccccCCCCC
Q psy17539 165 FKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPD 244 (443)
Q Consensus 165 ~tV~~dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~~l~~~~~i~~~~~~~~~~~~~~~E~ip~de~~~~~~ 244 (443)
+.+ .|+.+.. +.++.
T Consensus 890 irl-~flsngy--------------------------------------------------~h~~l-------------- 904 (1089)
T COG5077 890 IRL-CFLSNGY--------------------------------------------------QHVYL-------------- 904 (1089)
T ss_pred eEE-EEeecCc--------------------------------------------------eEEEE--------------
Confidence 555 3211111 11111
Q ss_pred CeEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCC------------CCc
Q psy17539 245 ELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESN------------PWP 312 (443)
Q Consensus 245 e~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k------------~~~ 312 (443)
+.|.+.++.+..|.+..++.|+|.+++...+++++|+ .+.+.++ +..
T Consensus 905 --------------------~ef~v~kdyt~~d~l~~v~~Kvg~tde~kk~vlv~e~-~n~r~~r~hsl~tl~~d~n~~s 963 (1089)
T COG5077 905 --------------------AEFYVEKDYTAVDHLHIVVTKVGCTDELKKSVLVYEV-VNLRPVRGHSLKTLIIDDNVRS 963 (1089)
T ss_pred --------------------EEEeecccccHHHHHHHHHhhcCCcHhhhhcEEEEEE-eecceecccCccceEEeccccc
Confidence 2355668899999999999999999999999999996 6666543 378
Q ss_pred ccccccCCCC
Q psy17539 313 SAYMANAPPS 322 (443)
Q Consensus 313 ~~~~E~ip~e 322 (443)
++|.|.+|.|
T Consensus 964 tlygev~ple 973 (1089)
T COG5077 964 TLYGEVFPLE 973 (1089)
T ss_pred eeeeEecchh
Confidence 8999999944
No 7
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.65 E-value=0.91 Score=37.18 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=45.4
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
|.|+|.- .+.+..+...+|.||..+|+++|++.++++++.=...- .+.-.+. .+..|.+.++
T Consensus 5 vKV~f~~-------tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~---s~~~v~l-~d~dle~aws 66 (80)
T cd06406 5 VKVHFKY-------TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA---SGEDVIL-SDTNMEDVWS 66 (80)
T ss_pred EEEEEEE-------EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC---CCCccCc-ChHHHHHHHH
Confidence 6777764 48899999999999999999999999999887644221 1222333 4567777765
No 8
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=88.18 E-value=0.078 Score=52.21 Aligned_cols=107 Identities=24% Similarity=0.379 Sum_probs=57.3
Q ss_pred EEEEcccCCHHHHHHHHHHHcCCCCc-cEEEEeeccCCCCCCC--CccCCCC----------------------------
Q psy17539 25 TLELSLKMTYEQLVALVAQHLNTDKK-LIQMFKVQAYKDTPGN--PLPHNFE---------------------------- 73 (443)
Q Consensus 25 ~l~Ls~~~tY~~la~~Va~~l~~dp~-~lrf~~~~~~~~~p~~--~i~~~~~---------------------------- 73 (443)
.+.+++..+-.+++..+.+++|.+++ .|.||---. |+. ++..+.+
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~----~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~ 163 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIK----PNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRY 163 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEE----TTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEec----cceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCC
Confidence 56778888888999999999999875 899886421 222 2222110
Q ss_pred CcHHHhcC-----------C--CC-----CCCCCceeeeeeccchhhhhhccCceEEEEe-----cCCCCC-CCCCCccc
Q psy17539 74 GTLKDILA-----------P--IN-----KPKMPKKMHYQKLSIPVVELINKRPFKVQAY-----KDTPGN-PLPHNFEG 129 (443)
Q Consensus 74 ~~L~d~l~-----------~--~~-----~~~~~~~l~YE~L~~~V~E~e~~~~~kv~~~-----~~~P~~-~ik~~~~~ 129 (443)
.+..+++. + .. .-.+++.|.|++|+..||+.++.+|.+++++ +++|+. +++++.+.
T Consensus 164 ~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~~~~~P~~~~~r~~~~~ 243 (249)
T PF12436_consen 164 PDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNPYSGKPKSQPIRYSDNG 243 (249)
T ss_dssp -SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---TTS-S---SB--TT--S
T ss_pred CCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEeccCCCCCCCccccCCCCC
Confidence 11111110 0 00 0135788999999999999999999888766 466774 45556667
Q ss_pred Ceeeee
Q psy17539 130 TLKDIL 135 (443)
Q Consensus 130 ~l~~iL 135 (443)
++.+||
T Consensus 244 tL~dil 249 (249)
T PF12436_consen 244 TLKDIL 249 (249)
T ss_dssp -HHHHS
T ss_pred cHHHhC
Confidence 766654
No 9
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=79.89 E-value=14 Score=29.31 Aligned_cols=59 Identities=20% Similarity=0.130 Sum_probs=45.2
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|+++... ...|.+.++...|=.+|=++|++.-|++|+.+||.-. |.. ..++.+|.++
T Consensus 2 ~~i~vkt~~---Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~-------Gk~--L~D~~tL~~y 60 (73)
T cd01791 2 IEVVCNDRL---GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW-------YTI--FKDHISLGDY 60 (73)
T ss_pred EEEEEECCC---CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC-------CcC--CCCCCCHHHc
Confidence 456666643 3559999999999999999999999999999999732 222 2345688886
No 10
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=73.51 E-value=18 Score=28.97 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=45.0
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|.++.. +...|.++++..+|=.+|=++|++..|++++..||+... . |..+ .++.+|+++
T Consensus 3 ~~i~Vk~~---~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~--~---G~~L--~D~~tL~~~ 63 (80)
T cd01792 3 WDLKVKML---GGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD--S---REVL--QDGVPLVSQ 63 (80)
T ss_pred eEEEEEeC---CCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc--C---CCCC--CCCCCHHHc
Confidence 34555553 245599999999999999999999999999999997542 2 2233 356678876
No 11
>KOG1863|consensus
Probab=73.14 E-value=0.85 Score=53.99 Aligned_cols=74 Identities=23% Similarity=0.295 Sum_probs=65.6
Q ss_pred eeEEEeecCccccCCC-CCCeEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhC-CCccccceeEEEe
Q psy17539 227 KIYRLEEIPQDEVSLD-PDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLN-IQEKEFEKVRVQD 300 (443)
Q Consensus 227 ~~~~~E~ip~de~~~~-~~e~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~-l~~~~~~kir~~e 300 (443)
..+|.+++|.+++... +.++++.|.||.|+..+.+|+||.+++.+++++.+++++++++++ +.++.|++++++-
T Consensus 954 ~~~r~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~~ 1029 (1093)
T KOG1863|consen 954 LFLRGESVPLLEILSSKGAPKLELVIHFSKELVQNIGNELNLLIVQGESLKENKDHLFDDLKEVSDELFSVFKHAG 1029 (1093)
T ss_pred cccccccCcHHHHhhcccccceeehhhcchhhhhhcchhhHHHhccchhHHHHHHHHHHHHHHhhHHHhHHHhhhh
Confidence 3556888888887766 456899999999999889999999999999999999999999999 9999999888775
No 12
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=71.92 E-value=13 Score=29.48 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=41.5
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
..+.+.++..+||++|..+|++.++.....+++.- .+..|..+..++..-|..++.
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y----~Dedgd~v~l~sd~Dl~~a~~ 66 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKY----QDEDGDLVSLTSDEDLEEAIE 66 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEE----ECCCCCEEEecCHHHHHHHHH
Confidence 45888899999999999999999998765555522 244566666666666666665
No 13
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=71.85 E-value=15 Score=29.83 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=37.3
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEee
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKV 57 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~ 57 (443)
|.|.+...... ....+..++..||-.||-.++....|++|...|+.-.
T Consensus 2 v~l~It~~~~~-~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 2 VKLFITSSNSK-QRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEEEEESSSS-SSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEEEEEeCCCC-CeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 34444443322 2458999999999999999999999999999999886
No 14
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=69.59 E-value=9.2 Score=29.60 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=31.6
Q ss_pred cCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeE
Q psy17539 343 IFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKF 381 (443)
Q Consensus 343 ~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kf 381 (443)
..|-++.|.|++..+|+.++++.+++.|++.. ++++|
T Consensus 8 ~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~--~~~~l 44 (72)
T PF11976_consen 8 QDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPE--ESIRL 44 (72)
T ss_dssp TTSEEEEEEEETTSCCHHHHHHHHHHHTTTT---TTEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCcc--ceEEE
Confidence 35678999999999999999999999999996 55555
No 15
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=68.81 E-value=16 Score=26.98 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=31.7
Q ss_pred CeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 23 GFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 23 ~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
.+.+.++..+|-.+|-+.|++..|++|..+|++-
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~ 44 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY 44 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 5889999999999999999999999999999874
No 16
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=66.64 E-value=15 Score=30.06 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=42.0
Q ss_pred eEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 24 FTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 24 F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
|.+..+...+|.+|...||++|+..|++++|.=..+ +..+.-++.+.+..+.+..+
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~--~~~~~~v~l~~e~~me~aW~ 64 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAP--GEDGHWVPISGEESLQRAWQ 64 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCC--CCCccEeecCcchHHHHHHH
Confidence 677888999999999999999999999988865433 22223345554667777765
No 17
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=65.11 E-value=15 Score=28.06 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
..+++.++..+|-.+|-++|++..|++|+..||+-
T Consensus 10 ~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 44 (71)
T cd01812 10 ESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF 44 (71)
T ss_pred EEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee
Confidence 34889999999999999999999999999999984
No 18
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=63.87 E-value=10 Score=28.46 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=28.0
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|-++.+.+.++++..++|++|++++|++...
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~ 37 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQ 37 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHH
Confidence 7888999999999999999999999987654
No 19
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=61.64 E-value=10 Score=30.17 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=30.5
Q ss_pred cCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEE
Q psy17539 343 IFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGV 383 (443)
Q Consensus 343 ~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfal 383 (443)
..|--|-+.+-+.++.+++|++|++++||+.. +-|+-.
T Consensus 7 ~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~---~QKLi~ 44 (74)
T cd01813 7 WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPE---RQKLLG 44 (74)
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHH---HEEEEe
Confidence 34566778899999999999999999998864 556543
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=61.52 E-value=26 Score=27.00 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=39.5
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...+.+.++...|=.+|-++|++..|++|...||+ .+ |..+ .++.+|.++
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~------g~~L--~d~~tl~~~ 59 (76)
T cd01806 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS------GKQM--NDDKTAADY 59 (76)
T ss_pred CCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-EC------CeEc--cCCCCHHHc
Confidence 45589999999999999999999999999999998 32 2222 245677765
No 21
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=61.38 E-value=15 Score=29.38 Aligned_cols=36 Identities=6% Similarity=0.101 Sum_probs=32.1
Q ss_pred CcccCCCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 340 IHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 340 ~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
---.||-.+.+.+.++.+.+++|++|+.+.|++...
T Consensus 7 ~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~ 42 (75)
T cd01799 7 DAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAV 42 (75)
T ss_pred ccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 345789999999999999999999999999998764
No 22
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=61.13 E-value=26 Score=27.93 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=36.0
Q ss_pred EEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEE
Q psy17539 10 EVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMF 55 (443)
Q Consensus 10 ~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~ 55 (443)
.|+++... ...|+++++...|=.+|=++||++.+++|+.+||.
T Consensus 3 ~I~Vk~~~---G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~ 45 (78)
T cd01804 3 NLNIHSTT---GTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL 45 (78)
T ss_pred EEEEEECC---CCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE
Confidence 45555542 34599999999999999999999999999999997
No 23
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=60.40 E-value=12 Score=29.40 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=35.3
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 344 FGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 344 hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
.|-.+.+.|.+.++.+++|++|+++.|++..+ ..|+-.+++ |+|+
T Consensus 9 ~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~-----q~L~~~G~~--L~d~ 53 (74)
T cd01807 9 QGRECSLQVSEKESVSTLKKLVSEHLNVPEEQ-----QRLLFKGKA--LADD 53 (74)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHH-----eEEEECCEE--CCCC
Confidence 46677889999999999999999999998876 234444544 7776
No 24
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=60.34 E-value=16 Score=27.78 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=40.6
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
..|++.++...|=.+|-+.|++..|++|+.+||.-. |..+ .++.+|.++
T Consensus 6 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~-------G~~L--~d~~tL~~~ 54 (69)
T PF00240_consen 6 KTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN-------GKEL--DDDKTLSDY 54 (69)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET-------TEEE--STTSBTGGG
T ss_pred cEEEEEECCCCCHHHhhhhcccccccccccceeeee-------eecc--cCcCcHHHc
Confidence 469999999999999999999999999999999853 2333 456777776
No 25
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=57.67 E-value=19 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=33.5
Q ss_pred CCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 20 NDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 20 ~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
....+.++++..+|-.+|=++|++.-|++++..|++-
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~ 44 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY 44 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE
Confidence 3456999999999999999999999999999999874
No 26
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=55.91 E-value=16 Score=29.71 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=34.7
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHH
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKD 78 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d 78 (443)
-+.|+|+-++ -.+-++++...|..+|-++|++.+++++.-..++.-++ +...+..+.+.+|++
T Consensus 4 ~milRvrS~d----G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~----~~~~l~s~~~~tl~~ 66 (80)
T PF11543_consen 4 SMILRVRSKD----GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRN----NKEELKSSDSKTLSS 66 (80)
T ss_dssp --EEEEE-SS----EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGG----GGGCSSS-TT-CCCC
T ss_pred cEEEEEECCC----CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCC----CCcccccCCcCCHHH
Confidence 4566666542 34888999999999999999999999988776665432 222444344445443
No 27
>PTZ00044 ubiquitin; Provisional
Probab=55.82 E-value=21 Score=27.87 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=39.9
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...+++.++..+|=.+|-++|+++.|++|+..||+ .+ |..+ .++.+|.++
T Consensus 10 G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~------g~~L--~d~~~l~~~ 59 (76)
T PTZ00044 10 GKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YS------GKQM--SDDLKLSDY 59 (76)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-EC------CEEc--cCCCcHHHc
Confidence 45699999999999999999999999999999999 32 2222 345667665
No 28
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=55.62 E-value=48 Score=25.94 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=40.6
Q ss_pred CCeEEEEc-ccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 22 QGFTLELS-LKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 22 ~~F~l~Ls-~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
..+.+.+. ..+||++|.++|++.++.....+++.- .+..|-.+..++..-|..++.
T Consensus 10 ~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y----~D~e~d~v~l~sd~Dl~~a~~ 66 (81)
T cd05992 10 EIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKY----PDEDGDLVTISSDEDLEEAIE 66 (81)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEe----eCCCCCEEEeCCHHHHHHHHH
Confidence 34677777 999999999999999998764444433 344556666666667777765
No 29
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=54.38 E-value=25 Score=27.95 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=40.6
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
..|++.++...|-.++-+++++..|++|++.++.-.. +.+.+ ..++.+|+++
T Consensus 10 ~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~-~~Gk~-----l~D~~~L~~~ 61 (74)
T cd01813 10 QEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLK-VKGKP-----AEDDVKISAL 61 (74)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeec-ccCCc-----CCCCcCHHHc
Confidence 4499999999999999999999999999999998621 12211 2356788877
No 30
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=53.88 E-value=40 Score=25.66 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=32.9
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
...+++.++...|=.+|-++|++..|++|...||+-
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (72)
T cd01809 10 SQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY 45 (72)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 456899999999999999999999999999999985
No 31
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=53.80 E-value=19 Score=24.83 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=27.1
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 344 FGYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 344 hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
.|-...+.+.++.++.++|+.|.++.|++..+
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~ 37 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQ 37 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHH
Confidence 57778888899999999999999999954443
No 32
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=53.14 E-value=19 Score=27.43 Aligned_cols=44 Identities=20% Similarity=0.524 Sum_probs=33.1
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|--|.+.+.+.++..++|++|++++|++..+ .++ +-.++ -|+|+
T Consensus 5 g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~---~~L--~~~G~--~L~d~ 48 (69)
T PF00240_consen 5 GKTFTLEVDPDDTVADLKQKIAEETGIPPEQ---QRL--IYNGK--ELDDD 48 (69)
T ss_dssp SEEEEEEEETTSBHHHHHHHHHHHHTSTGGG---EEE--EETTE--EESTT
T ss_pred CcEEEEEECCCCCHHHhhhhccccccccccc---cee--eeeee--cccCc
Confidence 4468899999999999999999999987754 343 33444 35655
No 33
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=51.82 E-value=26 Score=27.02 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=32.9
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
...+.+.++..+|=.+|-++|++..|++|...||+-
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred CCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 455899999999999999999999999999999983
No 34
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=51.72 E-value=21 Score=27.63 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=27.1
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|-.|.+.+.+.++.+++|++|++++|++..
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~ 39 (76)
T cd01803 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (76)
T ss_pred CCEEEEEECCcCcHHHHHHHHHHHhCCCHH
Confidence 667889999999999999999999999764
No 35
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=51.00 E-value=25 Score=28.68 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=29.3
Q ss_pred eEEEecCCchHHHHHHHHHHHhC-CCccccceeEEEeecCCCCcCCCC
Q psy17539 265 FLLRIKDNERFSKVKERLAKKLN-IQEKEFEKVRVQDKIHPGRESNPW 311 (443)
Q Consensus 265 f~f~l~~~e~~~d~~~rL~~k~~-l~~~~~~kir~~e~~~~~k~~k~~ 311 (443)
|.+-+.++.||.|+|+++++..+ ..+ .+..|+ +|.||+.++=
T Consensus 16 ~~ve~~~~~TV~~lK~~i~~~~~~~~~--~~~QrL---Iy~GKiLkD~ 58 (79)
T cd01790 16 QTVSCFLNWTVGELKTHLSRVYPSKPL--EQDQRL---IYSGKLLPDH 58 (79)
T ss_pred EEEecCCcChHHHHHHHHHHhcCCCCC--hhHeEE---EEcCeeccch
Confidence 34444789999999999999875 222 233454 5888988764
No 36
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=50.69 E-value=57 Score=36.56 Aligned_cols=87 Identities=16% Similarity=0.297 Sum_probs=66.7
Q ss_pred cccCCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCcc---cccccCCCCC------CCCCCc
Q psy17539 259 NIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPS---AYMANAPPSK------SNPDEL 329 (443)
Q Consensus 259 ~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~---~~~E~ip~ee------~~~~~~ 329 (443)
..-..|-.+-+....|+.+++..+.+..|..+ -.+|+..++ |.|+.++.... ...+.||+.. .++++-
T Consensus 464 ~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~g--c~ei~v~~i-y~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi 540 (823)
T COG5560 464 SGRRQPLKIELDASSTIRGLKKLVDAEYGKLG--CFEIKVMCI-YYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGI 540 (823)
T ss_pred CCCCCceEEEEeccchHHHHHHHHHHHhccCC--ccceeEEEE-EeccchhhcchhhHHHHhhcCccceEEEeecCCCCe
Confidence 33456788899999999999999999998877 458888884 88888876443 3557777653 347889
Q ss_pred eEeEEEeecCC----cccCCCce
Q psy17539 330 LIPVAHFQKDI----HNIFGYPF 348 (443)
Q Consensus 330 lI~vfHF~ke~----~~~hGiPF 348 (443)
+|+|.|-.-++ .+-+|.||
T Consensus 541 ~vpvvh~~~~~gYks~rlFg~pf 563 (823)
T COG5560 541 EVPVVHLRIEKGYKSKRLFGDPF 563 (823)
T ss_pred EEEEEeccccccccchhhhCCcc
Confidence 99999985443 47899997
No 37
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=49.88 E-value=34 Score=27.31 Aligned_cols=46 Identities=17% Similarity=0.478 Sum_probs=36.0
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.++.+.+++|+.|+++.|++. ++.|++++-.++ -|+|+
T Consensus 12 G~~~~~~v~~~~TV~~lK~~I~~~~~i~~---~~qrL~~~~~G~--~L~D~ 57 (80)
T cd01792 12 GNEFLVSLRDSMTVSELKQQIAQKIGVPA---FQQRLAHLDSRE--VLQDG 57 (80)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhCCCH---HHEEEEeccCCC--CCCCC
Confidence 67788888999999999999999999865 566776554444 36665
No 38
>PTZ00044 ubiquitin; Provisional
Probab=49.13 E-value=24 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=27.3
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|--+.+.+.+.++.+++|++|++++|++..+
T Consensus 10 G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~ 40 (76)
T PTZ00044 10 GKKQSFNFEPDNTVQQVKMALQEKEGIDVKQ 40 (76)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHH
Confidence 5667789999999999999999999998754
No 39
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=48.97 E-value=22 Score=27.44 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=34.0
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|--|.+-+.+..+.+++|++|+++.|++..+ .+ |+-.+++ |+|+
T Consensus 8 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~---q~--Li~~G~~--L~d~ 51 (70)
T cd01798 8 GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQ---LR--VIFAGKE--LRNT 51 (70)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCHHH---eE--EEECCeE--CCCC
Confidence 4557788999999999999999999998865 33 3444555 7776
No 40
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=48.91 E-value=34 Score=25.45 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEE
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMF 55 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~ 55 (443)
...+.+.++..+|-.+|-++|++..|+++..++|+
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~ 41 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLI 41 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE
Confidence 34588899999999999999999999999999983
No 41
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=47.45 E-value=52 Score=26.88 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=35.2
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCC-ccEEEEeeccCCCCCCCCccCCCCCcHHH
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDK-KLIQMFKVQAYKDTPGNPLPHNFEGTLKD 78 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp-~~lrf~~~~~~~~~p~~~i~~~~~~~L~d 78 (443)
...-+.|...++|.+|.++|+++++.+. ..+.+- |.+..|-++..+...-|.+
T Consensus 10 d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~Lk----Y~Ddegd~v~ltsd~DL~e 63 (82)
T cd06407 10 EKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLK----YLDDDEEWVLLTCDADLEE 63 (82)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEE----EECCCCCeEEeecHHHHHH
Confidence 3466778889999999999999999864 222221 3344565665555555555
No 42
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=45.11 E-value=31 Score=25.31 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=24.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 347 PFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 347 PF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
.+-+.+.+..+.+++|++|++++|++..
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~ 38 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVE 38 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHH
Confidence 4567889999999999999999999764
No 43
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=45.04 E-value=45 Score=27.44 Aligned_cols=36 Identities=17% Similarity=0.477 Sum_probs=27.4
Q ss_pred EEEecCCC--chHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCCCC
Q psy17539 349 LLRIKDNE--RFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSD 397 (443)
Q Consensus 349 ~f~v~~gE--~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd~d 397 (443)
.|.+.+.+ .|.++++.+++++++. .|. ..|++||.|
T Consensus 13 rf~~~~~~~~~~~~L~~ev~~rf~l~-------~f~------lKYlDde~e 50 (81)
T cd06396 13 SFLVSDSENTTWASVEAMVKVSFGLN-------DIQ------IKYVDEENE 50 (81)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhCCC-------cce------eEEEcCCCC
Confidence 45666744 8999999999999998 332 359999843
No 44
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=45.01 E-value=42 Score=26.11 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=40.2
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCC--CCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNT--DKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~--dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...|++.++..+|-.+|=+.|++..|+ +|+..|++-. |..+ .++.+|+++
T Consensus 10 g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~-------G~~L--~d~~~L~~~ 61 (77)
T cd01805 10 QQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS-------GKIL--KDDTTLEEY 61 (77)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC-------CEEc--cCCCCHHHc
Confidence 456999999999999999999999999 8999999842 3333 345677775
No 45
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=44.89 E-value=30 Score=26.99 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=33.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|--+.+-+.+.++.+++|++|+++.|++..+. -|+-.++ -|+|+
T Consensus 9 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q-----~Li~~Gk--~L~D~ 52 (71)
T cd01796 9 ETTFSLDVDPDLELENFKALCEAESGIPASQQ-----QLIYNGR--ELVDN 52 (71)
T ss_pred CCEEEEEECCcCCHHHHHHHHHHHhCCCHHHe-----EEEECCe--EccCC
Confidence 45577889999999999999999999988763 3333444 36665
No 46
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=44.61 E-value=33 Score=26.86 Aligned_cols=46 Identities=9% Similarity=0.181 Sum_probs=36.5
Q ss_pred cCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 343 IFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 343 ~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
..|-.|.+-+.+.++.+++|.+|+++.|++..+. | |+-.+++ |+|+
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q---~--Li~~G~~--L~D~ 51 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQ---R--WFFSGKL--LTDK 51 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHe---E--EEECCeE--CCCC
Confidence 4688899999999999999999999999987653 2 3434554 7776
No 47
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=44.59 E-value=55 Score=26.08 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=32.4
Q ss_pred CCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEE
Q psy17539 20 NDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQM 54 (443)
Q Consensus 20 ~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf 54 (443)
...+++++++..+|=.+|=++|.++.|++|+.-|+
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL 45 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW 45 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 35679999999999999999999999999999998
No 48
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=44.52 E-value=31 Score=26.61 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=27.3
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|-.+.+.+.+..+.+++|++|+++.|++-.+
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~ 40 (76)
T cd01806 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 40 (76)
T ss_pred CCEEEEEECCCCCHHHHHHHHhHhhCCChhh
Confidence 5567788999999999999999999998874
No 49
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=43.61 E-value=34 Score=27.19 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=33.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-+|.+.+.+..+.+++|++|+++.|++-. +.|+. -.++ -|+|+
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~---~qrLi--~~Gk--~L~D~ 54 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPE---KIVLK--KWYT--IFKDH 54 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChH---HEEEE--eCCc--CCCCC
Confidence 788999999999999999999999987654 34543 2243 47765
No 50
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=43.55 E-value=42 Score=26.32 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=41.0
Q ss_pred CCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 20 NDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 20 ~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+...|.++++..+|=.++=++|++.-|++|+..||+-. |.+ ..++.+|.++
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~----G~~-----L~D~~~l~~~ 57 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS----GKL-----LTDKTRLQET 57 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC----CeE-----CCCCCCHHHc
Confidence 45679999999999999999999999999999999732 222 3456777774
No 51
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=42.81 E-value=39 Score=25.72 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=25.1
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|=-+.+.+.+..+.+++|++|++++|++..
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (72)
T cd01809 10 SQTHTFTVEEEITVLDLKEKIAEEVGIPVE 39 (72)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 334567888999999999999999999654
No 52
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=42.30 E-value=47 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.489 Sum_probs=32.0
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCCCC
Q psy17539 348 FLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSD 397 (443)
Q Consensus 348 F~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd~d 397 (443)
=.|.+.+.+.+.+.++=|.+|+|+.+-. .-.|+ -.|++||.|
T Consensus 13 hRf~~~~s~~~~~L~~~I~~Rl~~d~~~--~~~~~------L~YlDDEgD 54 (86)
T cd06409 13 HRFRLRPSESLEELRTLISQRLGDDDFE--THLYA------LSYVDDEGD 54 (86)
T ss_pred EEEEecCCCCHHHHHHHHHHHhCCcccc--CCccc------EEEEcCCCC
Confidence 3678889999999999999999998753 22222 359999833
No 53
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=41.94 E-value=44 Score=26.07 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=40.3
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...+.+.++..+|=.+|=+.|++..|++|+..||+-. | ..+ .++.+|+++
T Consensus 10 G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~----G---~~L--~d~~~L~~~ 59 (74)
T cd01807 10 GRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK----G---KAL--ADDKRLSDY 59 (74)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC----C---EEC--CCCCCHHHC
Confidence 4568999999999999999999999999999999732 2 222 356778776
No 54
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=40.45 E-value=11 Score=29.98 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=23.1
Q ss_pred CCchHHHHHHHHHHhCCCcccccce
Q psy17539 355 NERFSKVKERLAKKLNIQEKEFEKY 379 (443)
Q Consensus 355 gE~f~~tK~Rl~~rlgi~~kef~K~ 379 (443)
+|..+|.|.|-+.-|||.+|.|.|.
T Consensus 16 ~e~IKdik~~AK~ElGv~gk~Fnkl 40 (69)
T PF11126_consen 16 NEMIKDIKDRAKDELGVDGKMFNKL 40 (69)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 7889999999999999999999984
No 55
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=40.26 E-value=50 Score=25.38 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=40.6
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...|.++++..+|-.++=+.|++..|++++..||+-. | .++ .++.+|.|+
T Consensus 8 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~----G---~~L--~d~~~l~~~ 57 (70)
T cd01798 8 GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA----G---KEL--RNTTTIQEC 57 (70)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC----C---eEC--CCCCcHHHc
Confidence 4569999999999999999999999999999999632 2 223 456788875
No 56
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=40.25 E-value=33 Score=26.18 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=27.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|-.+-+.+.+.++..++|+.|++++|++...
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~ 39 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRD 39 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHH
Confidence 5566788899999999999999999998865
No 57
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=40.09 E-value=2.1e+02 Score=23.62 Aligned_cols=67 Identities=7% Similarity=0.164 Sum_probs=44.5
Q ss_pred ceEEEEEeCCCCCC-CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 8 RVEVTFCDKTILND-QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 8 Rv~V~F~~~~~~~~-~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
+|.|.|+|....-. +.=...++.+++-.++...|-++|+++|..=-|.-+|+ +-.| +...++.++-.
T Consensus 1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn-~f~p------~~d~~~g~LY~ 68 (87)
T cd01612 1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINN-SFAP------SPDENVGNLYR 68 (87)
T ss_pred CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECC-ccCC------CchhHHHHHHH
Confidence 58899999754211 11233489999999999999999999988644444443 2233 23467777654
No 58
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=39.68 E-value=83 Score=24.57 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=25.5
Q ss_pred CCceEEEec-CCCchHHHHHHHHHHhCCCc
Q psy17539 345 GYPFLLRIK-DNERFSKVKERLAKKLNIQE 373 (443)
Q Consensus 345 GiPF~f~v~-~gE~f~~tK~Rl~~rlgi~~ 373 (443)
|--+.|.+. .+-.|.+.+.+|+++++++.
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~ 38 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDA 38 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCC
Confidence 456778888 99999999999999999986
No 59
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=39.13 E-value=94 Score=25.24 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=39.7
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.....++++...+-..|.++++++-|++++.+||+-- |.++. .+.|+.++
T Consensus 21 g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~-------G~~L~--~~~T~~~l 70 (87)
T cd01763 21 GNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD-------GQRIR--DNQTPDDL 70 (87)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC-------CeECC--CCCCHHHc
Confidence 4558889999999999999999999999999999863 23333 35566665
No 60
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=39.02 E-value=49 Score=26.10 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=32.9
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
...++++++..+|=.++=++|.+..|++|+..|++-
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~ 42 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQY 42 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 456999999999999999999999999999999874
No 61
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=38.29 E-value=92 Score=24.00 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=36.9
Q ss_pred eEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 24 FTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 24 F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+++++...+|=.+|=++||+..|++++.+|+.-. |..+ .++.+|.++
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~-------Gk~L--~d~~tL~~~ 58 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA-------GKIL--KDTDTLTQH 58 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC-------CeEc--CCCCcHHHc
Confidence 6889999999999999999999999999998531 2233 245677775
No 62
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=37.70 E-value=44 Score=26.09 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=33.8
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 344 FGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 344 hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
.|--|-+-+.+..+.+++|++|+++.|++-.++ ++ +-.+++ |+|+
T Consensus 7 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q---~L--~~~G~~--L~D~ 51 (74)
T cd01810 7 KGRSSIYEVQLTQTVATLKQQVSQRERVQADQF---WL--SFEGRP--MEDE 51 (74)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHe---EE--EECCEE--CCCC
Confidence 356677889999999999999999999977655 22 333443 6776
No 63
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=36.63 E-value=43 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.540 Sum_probs=30.7
Q ss_pred EEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCCCCccccc
Q psy17539 349 LLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDCPVSI 402 (443)
Q Consensus 349 ~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd~d~~~~l 402 (443)
.|++.++..|.+.+++|++|+++.+ +. .|+ ..|++|| ...+.+
T Consensus 13 r~~l~~~~~~~~L~~~i~~r~~~~~--~~--~f~------LkY~Dde-gd~v~l 55 (82)
T cd06407 13 RFRLPPSWGFTELKQEIAKRFKLDD--MS--AFD------LKYLDDD-EEWVLL 55 (82)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCC--CC--eeE------EEEECCC-CCeEEe
Confidence 4778889999999999999999863 11 111 3688887 444433
No 64
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=35.92 E-value=42 Score=26.22 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=32.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 347 PFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 347 PF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
.+.+.+.+.++.+++|.+|+++.|++..+. -|+-.+++ |+|+
T Consensus 10 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-----~Li~~Gk~--L~D~ 51 (74)
T cd01793 10 THTLEVTGQETVSDIKAHVAGLEGIDVEDQ-----VLLLAGVP--LEDD 51 (74)
T ss_pred EEEEEECCcCcHHHHHHHHHhhhCCCHHHE-----EEEECCeE--CCCC
Confidence 366788999999999999999999987662 33444554 6776
No 65
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=35.67 E-value=50 Score=27.11 Aligned_cols=34 Identities=6% Similarity=0.279 Sum_probs=27.0
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEE
Q psy17539 348 FLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVI 384 (443)
Q Consensus 348 F~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv 384 (443)
+-+++-+|=+|+++++.|.+||+++..+ +++..-
T Consensus 13 IaIrvp~~~~y~~L~~ki~~kLkl~~e~---i~LsYk 46 (80)
T cd06406 13 VAIQVARGLSYATLLQKISSKLELPAEH---ITLSYK 46 (80)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCchh---cEEEec
Confidence 5577889999999999999999998533 555444
No 66
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=35.55 E-value=48 Score=26.38 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=26.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|-+|-+-+.+..+.+++|++|+++.|++-.
T Consensus 11 G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~ 40 (78)
T cd01804 11 GTRFDLSVPPDETVEGLKKRISQRLKVPKE 40 (78)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHHhCCChH
Confidence 777889999999999999999999998653
No 67
>cd08010 yceG_like proteins similar to Escherichia coli yceG. The gene product of Escherichia coli yceG has been erroneously annotated as an aminodeoxychorismate lyase. Its overexpression has been reported to cause abnormal biofilm architecture, and it has been reported to be part of a putative five-gene operon. It might function as a periplasmic solute-binding protein. The family also includes Streptomyces caeruleus NovB, an uncharacterized member of the novobiocin biosynthetic gene cluster.
Probab=34.57 E-value=65 Score=31.70 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=29.5
Q ss_pred CceEEEecCCCchHHHHHHHHHHhCCCcccccc
Q psy17539 346 YPFLLRIKDNERFSKVKERLAKKLNIQEKEFEK 378 (443)
Q Consensus 346 iPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K 378 (443)
..+.+.|.+|.+..++-++|.+..+++.++|.+
T Consensus 27 ~~~~vti~eG~t~~~i~~~l~~~~~~~~~~f~~ 59 (245)
T cd08010 27 AQVKVTIPEGYTLKQIAKALSKAGGLSDAEFLA 59 (245)
T ss_pred eeEEEEEcCCccHHHHHHHHHhccCCCHHHHHH
Confidence 346788999999999999999999999999866
No 68
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=34.35 E-value=48 Score=26.88 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCcccc
Q psy17539 348 FLLRIKDNERFSKVKERLAKKLNIQEKEF 376 (443)
Q Consensus 348 F~f~v~~gE~f~~tK~Rl~~rlgi~~kef 376 (443)
+.+-+-++.+++++++.|++.++++...|
T Consensus 16 ~Rie~~~~~t~~~L~~kI~~~l~~~~~~~ 44 (80)
T PF11543_consen 16 KRIEVSPSSTLSDLKEKISEQLSIPDSSQ 44 (80)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHS---TTT-
T ss_pred EEEEcCCcccHHHHHHHHHHHcCCCCcce
Confidence 56778899999999999999999998743
No 69
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=34.30 E-value=66 Score=26.10 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=30.2
Q ss_pred eEEEEcccCCHHHHHHHHHHHcCCCCccEEEEee
Q psy17539 24 FTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKV 57 (443)
Q Consensus 24 F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~ 57 (443)
.+-.++..||..+|-+++....|++|...||.-.
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~ 48 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRLQLF 48 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEEEEE
Confidence 5566999999999999999999999999998543
No 70
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=33.96 E-value=54 Score=25.83 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|--+.+-+.++.+.+++|++|+..+|++...
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~ 37 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGK 37 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHH
Confidence 3345677889999999999999999998744
No 71
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=33.84 E-value=74 Score=24.80 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=40.6
Q ss_pred CCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 20 NDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 20 ~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
....++++++..+|=.+|=++|++..|++++..|++- . |.++ .++.+|.++
T Consensus 7 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~----~---G~~L--~D~~tL~~~ 57 (74)
T cd01810 7 KGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSF----E---GRPM--EDEHPLGEY 57 (74)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE----C---CEEC--CCCCCHHHc
Confidence 4567999999999999999999999999999999973 1 2333 356788774
No 72
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=33.57 E-value=1.2e+02 Score=25.33 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=39.6
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
||.|+| ++...-+.+....+|+||..+|.++++.. ..+++- |.+- |.++...+..-|.-.+.
T Consensus 4 kVKv~~------~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iK----ykDE-GD~iti~sq~DLd~Ai~ 65 (86)
T cd06408 4 RVKVHA------QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIK----MKDD-GDMITMGDQDDLDMAID 65 (86)
T ss_pred EEEEEe------cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEE----EEcC-CCCccccCHHHHHHHHH
Confidence 555654 23457888999999999999999999985 222221 1222 55555555555555444
No 73
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=32.79 E-value=70 Score=24.97 Aligned_cols=49 Identities=22% Similarity=0.138 Sum_probs=39.7
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.++++++...+|=.++-++|++.-|++++..|++-. + .+ ..++.+|+++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~----G---k~--L~D~~tL~~~ 57 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA----G---VP--LEDDATLGQC 57 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC----C---eE--CCCCCCHHHc
Confidence 469999999999999999999999999999999742 2 22 2456788774
No 74
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=32.57 E-value=61 Score=27.53 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 344 FGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 344 hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
.|-.+.+.+.+.++.+++|++|+++.|++-.+ .| |+-.+++ |+|+
T Consensus 36 ~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~---Qr--Li~~Gk~--L~D~ 80 (103)
T cd01802 36 TGTCFELRVSPFETVISVKAKIQRLEGIPVAQ---QH--LIWNNME--LEDE 80 (103)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHH---EE--EEECCEE--CCCC
Confidence 47788899999999999999999999987744 33 3334444 7776
No 75
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=31.40 E-value=88 Score=21.19 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=32.5
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEee
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKV 57 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~ 57 (443)
....++.++..+|..++-++++++.|.+|...+|+..
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~ 43 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVN 43 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEEC
Confidence 3457888889999999999999999999999999765
No 76
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=31.21 E-value=85 Score=25.81 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=35.7
Q ss_pred eEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 24 FTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 24 F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
|.+.-|...+|.+|.+.|+.+.+.+ .|... |-+.-+-++..++..-|.+-+.
T Consensus 14 f~~~~~~~~~~~~L~~ev~~rf~l~----~f~lK--YlDde~e~v~lssd~eLeE~~r 65 (81)
T cd06396 14 FLVSDSENTTWASVEAMVKVSFGLN----DIQIK--YVDEENEEVSVNSQGEYEEALK 65 (81)
T ss_pred EEecCCCCCCHHHHHHHHHHHhCCC----cceeE--EEcCCCCEEEEEchhhHHHHHH
Confidence 5555555889999999999999999 33332 2233455676666666766654
No 77
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=30.20 E-value=2.5e+02 Score=24.04 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=44.7
Q ss_pred cceEEEEEeCCCCCC---CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 7 NRVEVTFCDKTILND---QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 7 nRv~V~F~~~~~~~~---~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
+||.|..-....+.- +....-+...+|..|+...|-++|+++|..--|.-+++ ..| +.+.+++++-.
T Consensus 15 ~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~--~lp------~~s~tm~elY~ 84 (104)
T PF02991_consen 15 DKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNN--TLP------STSSTMGELYE 84 (104)
T ss_dssp TEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTT--BES------STTSBHHHHHH
T ss_pred CccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcC--ccc------chhhHHHHHHH
Confidence 677777655333221 22556689999999999999999999999877777764 223 24578888765
No 78
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=29.96 E-value=71 Score=25.13 Aligned_cols=28 Identities=14% Similarity=0.352 Sum_probs=24.8
Q ss_pred CceEEEecCCCchHHHHHHHHHHhCCCc
Q psy17539 346 YPFLLRIKDNERFSKVKERLAKKLNIQE 373 (443)
Q Consensus 346 iPF~f~v~~gE~f~~tK~Rl~~rlgi~~ 373 (443)
--+.|.+.++-+|++.+.+|++++++..
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~ 38 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDN 38 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 4567888889999999999999999876
No 79
>PHA02599 dsbA double-stranded DNA binding protein; Provisional
Probab=29.62 E-value=23 Score=29.46 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=23.7
Q ss_pred CCchHHHHHHHHHHhCCCcccccce
Q psy17539 355 NERFSKVKERLAKKLNIQEKEFEKY 379 (443)
Q Consensus 355 gE~f~~tK~Rl~~rlgi~~kef~K~ 379 (443)
||.++|.|.|-..-+||.+|.|.|.
T Consensus 38 ~e~iKdIk~rAK~E~GvdGK~Fnkl 62 (91)
T PHA02599 38 GEMIKDIKDRAKTELGVDGKMFNKL 62 (91)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 8999999999999999999999984
No 80
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=28.95 E-value=1.2e+02 Score=23.13 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=31.5
Q ss_pred CeEEEEcccCCHHHHHHHHHHHcCCCC-ccEEEEe
Q psy17539 23 GFTLELSLKMTYEQLVALVAQHLNTDK-KLIQMFK 56 (443)
Q Consensus 23 ~F~l~Ls~~~tY~~la~~Va~~l~~dp-~~lrf~~ 56 (443)
.+.+.+....+-..|.++.+++.|+++ ..+||+-
T Consensus 12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f 46 (72)
T PF11976_consen 12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF 46 (72)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE
Confidence 588899999999999999999999999 9999875
No 81
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=27.29 E-value=85 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEE
Q psy17539 344 FGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGV 383 (443)
Q Consensus 344 hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfal 383 (443)
.|-...|.|++.++++.+|+.++++.|++- +..+|-.
T Consensus 20 ~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~---~~~rf~f 56 (87)
T cd01763 20 DGNEVFFKIKRSTPLKKLMEAYCQRQGLSM---NSVRFLF 56 (87)
T ss_pred CCCEEEEEEcCCCHHHHHHHHHHHHhCCCc---cceEEEE
Confidence 477788999999999999999999999986 4566644
No 82
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=27.15 E-value=70 Score=29.41 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.4
Q ss_pred ccCCCceEEEecCCCchHHHHHHHHHHhC
Q psy17539 342 NIFGYPFLLRIKDNERFSKVKERLAKKLN 370 (443)
Q Consensus 342 ~~hGiPF~f~v~~gE~f~~tK~Rl~~rlg 370 (443)
..||.||++-++ |.+-.++-.-+++|++
T Consensus 105 ~kFGfpFii~v~-g~s~~~IL~~l~~Rl~ 132 (158)
T TIGR03180 105 EKFGRIFLIRAA-GRSAEEMLDALQARLP 132 (158)
T ss_pred HHCCCeEEEeeC-CCCHHHHHHHHHHHhC
Confidence 467999999998 8888888888888886
No 83
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=26.89 E-value=1.1e+02 Score=25.53 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=38.9
Q ss_pred eEEEEc---ccCCHHHHHHHHHHHcCCCC-ccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 24 FTLELS---LKMTYEQLVALVAQHLNTDK-KLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 24 F~l~Ls---~~~tY~~la~~Va~~l~~dp-~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
|.+.++ ..++|++|.++|++.+++++ ..+.+ . |++.-|..+...+..-|.+-+.
T Consensus 14 f~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l-~---Y~Dedgd~V~l~~D~DL~~a~~ 71 (91)
T cd06398 14 FTFPVAENQLDLNMDGLREKVEELFSLSPDADLSL-T---YTDEDGDVVTLVDDNDLTDAIQ 71 (91)
T ss_pred EEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEE-E---EECCCCCEEEEccHHHHHHHHH
Confidence 777665 68999999999999999986 45544 2 3454566666666666766665
No 84
>KOG0006|consensus
Probab=26.80 E-value=1.3e+02 Score=31.09 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=37.2
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEee
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKV 57 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~ 57 (443)
+.|.|..+. ...+|.+.+..+.+..||.+.||.++|+.|+-||..-.
T Consensus 3 ~lvqf~~~~--~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFa 49 (446)
T KOG0006|consen 3 VLVQFNKTG--SSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFA 49 (446)
T ss_pred EEEEeCCcc--ccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEe
Confidence 345554432 23569999999999999999999999999999997543
No 85
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=26.31 E-value=3.4e+02 Score=28.38 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=47.8
Q ss_pred cCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCcccccccCCCCCCCCCCceEeEEEeecCCcccCCCceE
Q psy17539 270 KDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDELLIPVAHFQKDIHNIFGYPFL 349 (443)
Q Consensus 270 ~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~~E~ip~ee~~~~~~lI~vfHF~ke~~~~hGiPF~ 349 (443)
.++-.+.++++++=+.+++ ||+|.- ..++.|=+
T Consensus 272 ~~~~nld~L~e~i~~~L~l-------iRVYtK----------------------------------------~~g~~pd~ 304 (365)
T COG1163 272 KKGINLDELKERIWDVLGL-------IRVYTK----------------------------------------PPGEEPDF 304 (365)
T ss_pred ccCCCHHHHHHHHHHhhCe-------EEEEec----------------------------------------CCCCCCCC
Confidence 3556778888888888877 777762 23344444
Q ss_pred ---EEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEc
Q psy17539 350 ---LRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINN 386 (443)
Q Consensus 350 ---f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~ 386 (443)
+.++.|.+..|+..||++-| -+++|.|+|-.
T Consensus 305 ~~PlIlr~GsTV~Dvc~~IH~~l------~~~FryA~VWG 338 (365)
T COG1163 305 DEPLILRRGSTVGDVCRKIHRDL------VENFRYARVWG 338 (365)
T ss_pred CCCeEEeCCCcHHHHHHHHHHHH------HHhcceEEEec
Confidence 67899999999999999865 36899999943
No 86
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=26.07 E-value=2.6e+02 Score=22.37 Aligned_cols=47 Identities=11% Similarity=0.253 Sum_probs=35.3
Q ss_pred EEEEeCCCCCCCCeEEEEccc-C-CHHHHHHHHHHHcCCCCccEE-EEee
Q psy17539 11 VTFCDKTILNDQGFTLELSLK-M-TYEQLVALVAQHLNTDKKLIQ-MFKV 57 (443)
Q Consensus 11 V~F~~~~~~~~~~F~l~Ls~~-~-tY~~la~~Va~~l~~dp~~lr-f~~~ 57 (443)
|.|..+..+-.++..+.+|.+ + |+++|-..|.+.++.+|--+| +|+.
T Consensus 3 I~~~rNGD~~~~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~ 52 (80)
T cd01617 3 VVVYRNGDPFFKGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTL 52 (80)
T ss_pred EEEEECCCCCCCCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcC
Confidence 555555555567788999997 3 899999999999999766554 4444
No 87
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=3.8e+02 Score=30.37 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=50.7
Q ss_pred cCCceeeHHHHHHhhcccccCccccCCCCCCCCceEEEEEecceeeeecCcccc-c-cccccCCCcceeEEEeecCcccc
Q psy17539 162 KRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVS-M-DQLFGMNATTKIYRLEEIPQDEV 239 (443)
Q Consensus 162 K~~~tV~~dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~~l~~~~~-i-~~~~~~~~~~~~~~~E~ip~de~ 239 (443)
+.+ |+ .++-.-+.++.+. .+-.+|..-+++.|+.++.+..... + ..| ...-.+|.-|
T Consensus 476 ~sS-t~-~~lk~lv~~~~gk---------~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I---~~~d~vylYe------- 534 (823)
T COG5560 476 ASS-TI-RGLKKLVDAEYGK---------LGCFEIKVMCIYYGGNYNMLEPADKVLLQDI---PQTDFVYLYE------- 534 (823)
T ss_pred ccc-hH-HHHHHHHHHHhcc---------CCccceeEEEEEeccchhhcchhhHHHHhhc---CccceEEEee-------
Confidence 455 66 5454444444432 1234778888999999988876654 2 222 1112233223
Q ss_pred CCCCCCeEEeeeeecccc----ccccCCce-EEEec
Q psy17539 240 SLDPDELLIPVAHFQKDI----HNIFGYPF-LLRIK 270 (443)
Q Consensus 240 ~~~~~e~lv~v~hf~ke~----~~~~gipf-~f~l~ 270 (443)
..+++.+|||.|..-++ .+.||.|| .+.|.
T Consensus 535 -~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~ 569 (823)
T COG5560 535 -TNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVL 569 (823)
T ss_pred -cCCCCeEEEEEeccccccccchhhhCCcceEEEee
Confidence 23568999999983332 57799995 44443
No 88
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=25.77 E-value=1.3e+02 Score=24.04 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=30.2
Q ss_pred EEecCCchHHHHHHHHHHHhCCCccccceeEEEee
Q psy17539 267 LRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDK 301 (443)
Q Consensus 267 f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~ 301 (443)
+.+.++.|..|+.+.+.+|+++.+ ......++|+
T Consensus 17 i~V~~~~t~~~Vi~~~l~k~~l~~-~~~~y~L~ev 50 (87)
T cd01768 17 LRVSKDTTAQDVIQQLLKKFGLDD-DPEDYALVEV 50 (87)
T ss_pred EEECCCCCHHHHHHHHHHHhCCcC-CcccEEEEEE
Confidence 667799999999999999999997 6678888886
No 89
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=24.34 E-value=1.1e+02 Score=23.95 Aligned_cols=53 Identities=9% Similarity=0.213 Sum_probs=38.5
Q ss_pred EEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 25 TLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 25 ~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
.+.++..++|++|.++|++.++..+..+++.=.. .-|-.+..++..-|..++.
T Consensus 15 ~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D----~dgD~V~i~sd~Dl~~a~~ 67 (84)
T PF00564_consen 15 IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD----EDGDLVTISSDEDLQEAIE 67 (84)
T ss_dssp EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE----TTSSEEEESSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC----CCCCEEEeCCHHHHHHHHH
Confidence 3789999999999999999999986666655432 2345555555556666654
No 90
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=24.29 E-value=96 Score=25.64 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.5
Q ss_pred EEEecCCchHHHHHHHHHHHhCCCcc
Q psy17539 266 LLRIKDNERFSKVKERLAKKLNIQEK 291 (443)
Q Consensus 266 ~f~l~~~e~~~d~~~rL~~k~~l~~~ 291 (443)
+|.++.+.+|+.+..-|++|++++++
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~ 44 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKAS 44 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcc
Confidence 57899999999999999999999764
No 91
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=23.64 E-value=89 Score=24.56 Aligned_cols=24 Identities=8% Similarity=0.470 Sum_probs=22.2
Q ss_pred EEEecCCCchHHHHHHHHHHhCCC
Q psy17539 349 LLRIKDNERFSKVKERLAKKLNIQ 372 (443)
Q Consensus 349 ~f~v~~gE~f~~tK~Rl~~rlgi~ 372 (443)
.+.+..+-+|.+.+.+|++++|..
T Consensus 15 ~~~~~~~~s~~~L~~~i~~~~~~~ 38 (84)
T PF00564_consen 15 IISLPSDVSFDDLRSKIREKFGLL 38 (84)
T ss_dssp EEEECSTSHHHHHHHHHHHHHTTS
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCC
Confidence 477888999999999999999998
No 92
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=23.50 E-value=92 Score=24.90 Aligned_cols=25 Identities=8% Similarity=0.320 Sum_probs=0.0
Q ss_pred eEE-EecCCCchHHHHHHHHHHhCCC
Q psy17539 348 FLL-RIKDNERFSKVKERLAKKLNIQ 372 (443)
Q Consensus 348 F~f-~v~~gE~f~~tK~Rl~~rlgi~ 372 (443)
|-+ .+.+..+.+++|++|+.+.|++
T Consensus 14 ~~l~~v~~~~TV~~lK~~i~~~~gi~ 39 (78)
T cd01797 14 RTVDSLSRLTKVEELREKIQELFNVE 39 (78)
T ss_pred EEeeccCCcCcHHHHHHHHHHHhCCC
No 93
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=23.44 E-value=1.8e+02 Score=24.62 Aligned_cols=56 Identities=9% Similarity=0.187 Sum_probs=38.3
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCc-cEEEEeeccCCCCCCC-CccCCCCCcHHHhcC
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKK-LIQMFKVQAYKDTPGN-PLPHNFEGTLKDILA 81 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~-~lrf~~~~~~~~~p~~-~i~~~~~~~L~d~l~ 81 (443)
.+=-+.+.+.+|+.+|..++++.++.+.. .|++.-. +.+.. -+...+...|..|+.
T Consensus 23 ~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp----~edld~Lisv~~DeDl~~M~~ 80 (97)
T cd06410 23 ETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLP----DEDLDALISVSNDEDLKNMME 80 (97)
T ss_pred ceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcC----CCCcceeEEecCcHHHHHHHH
Confidence 44678999999999999999999999865 3332211 12323 334455667777775
No 94
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=23.17 E-value=1e+02 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.3
Q ss_pred ceEEEecCCchHHHHHHHHHHHhCCCccc
Q psy17539 264 PFLLRIKDNERFSKVKERLAKKLNIQEKE 292 (443)
Q Consensus 264 pf~f~l~~~e~~~d~~~rL~~k~~l~~~~ 292 (443)
....+++++.|++++|++|...+|++.+.
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~ 43 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSD 43 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccc
Confidence 45677889999999999999999998753
No 95
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=22.86 E-value=1.5e+02 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=29.2
Q ss_pred EEecCCchHHHHHHHHHHHhCCCccccceeEEEee
Q psy17539 267 LRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDK 301 (443)
Q Consensus 267 f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~ 301 (443)
+.+.++.|..|+.+.+.+|+++.+. .....++|+
T Consensus 20 i~v~~~tTa~~Vi~~~l~k~~l~~~-~~~y~L~e~ 53 (90)
T smart00314 20 LRVSSRTTARDVIQQLLEKFHLTDD-PEEYVLVEV 53 (90)
T ss_pred EEECCCCCHHHHHHHHHHHhCCCCC-cccEEEEEE
Confidence 4567999999999999999999876 677888885
No 96
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=22.33 E-value=93 Score=26.54 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHcCCCCccEEEEee
Q psy17539 33 TYEQLVALVAQHLNTDKKLIQMFKV 57 (443)
Q Consensus 33 tY~~la~~Va~~l~~dp~~lrf~~~ 57 (443)
-|..|++.+++.||++|+++-..-.
T Consensus 77 l~~~i~~~l~~~lgi~~~rv~I~f~ 101 (116)
T PTZ00397 77 IAAAITKILASHLKVKSERVYIEFK 101 (116)
T ss_pred HHHHHHHHHHHHhCcCcccEEEEEE
Confidence 3678889999999999997665443
No 97
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=22.14 E-value=97 Score=23.38 Aligned_cols=26 Identities=8% Similarity=0.221 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHcCCCCccEEEEeec
Q psy17539 33 TYEQLVALVAQHLNTDKKLIQMFKVQ 58 (443)
Q Consensus 33 tY~~la~~Va~~l~~dp~~lrf~~~~ 58 (443)
=|..|++.+++.+|++|+.++.+...
T Consensus 20 l~~~it~~l~~~lg~p~~~v~V~i~e 45 (64)
T PRK01964 20 LIREVTEAISATLDVPKERVRVIVNE 45 (64)
T ss_pred HHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 36789999999999999998877653
No 98
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=21.74 E-value=1.3e+02 Score=24.54 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=35.2
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEc-CcceecCCC
Q psy17539 344 FGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINN-NRITYIEED 395 (443)
Q Consensus 344 hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~-~~~~yl~dd 395 (443)
-+.++.|.|.|-||...+|+.|++.-|+++.+ ++++=-. ++-+.|.+.
T Consensus 9 g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g~q----rLsfQepgg~rqlL~s~ 57 (80)
T cd01811 9 GYSDWILRVNPYSPIRKIKEKIRRSRNCSGLQ----RLSFQEPGGERQLLSSR 57 (80)
T ss_pred CCCceEEEeCCcchHHHHHHHHHHhhCcccce----EEEeecCCccccccccc
Confidence 35789999999999999999999999999832 4444322 333455554
No 99
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=21.73 E-value=96 Score=26.57 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=23.0
Q ss_pred eEEEecCCchHHHHHHHHHHHhCCCcc
Q psy17539 265 FLLRIKDNERFSKVKERLAKKLNIQEK 291 (443)
Q Consensus 265 f~f~l~~~e~~~d~~~rL~~k~~l~~~ 291 (443)
.+|++|++-||+++...+.++++++.+
T Consensus 35 ~KfLvp~~~tv~qf~~~ir~rl~l~~~ 61 (104)
T PF02991_consen 35 KKFLVPKDLTVGQFVYIIRKRLQLSPE 61 (104)
T ss_dssp SEEEEETTSBHHHHHHHHHHHTT--TT
T ss_pred cEEEEcCCCchhhHHHHhhhhhcCCCC
Confidence 469999999999999999999999874
No 100
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=21.13 E-value=99 Score=28.40 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=31.0
Q ss_pred eeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCC
Q psy17539 251 AHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQ 289 (443)
Q Consensus 251 ~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~ 289 (443)
....+.....||.||.+-+. |-+-.+++..|..|++=+
T Consensus 97 ~~lN~~Y~~kFGfpFii~v~-g~s~~~IL~~l~~Rl~n~ 134 (158)
T TIGR03180 97 LEGNAAYEEKFGRIFLIRAA-GRSAEEMLDALQARLPND 134 (158)
T ss_pred HHHHHHHHHHCCCeEEEeeC-CCCHHHHHHHHHHHhCCC
Confidence 34445667889999999997 888899999999999743
No 101
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=20.76 E-value=3.1e+02 Score=23.17 Aligned_cols=50 Identities=16% Similarity=-0.001 Sum_probs=39.9
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...+.+.++..+|=.+|=++|++.-|++++..||+-. | .. ..++.+|+++
T Consensus 37 G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~----G---k~--L~D~~tL~dy 86 (103)
T cd01802 37 GTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN----N---ME--LEDEYCLNDY 86 (103)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC----C---EE--CCCCCcHHHc
Confidence 4569999999999999999999999999999999732 2 22 2456677765
No 102
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=20.75 E-value=1.3e+02 Score=23.09 Aligned_cols=42 Identities=14% Similarity=0.316 Sum_probs=31.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 347 PFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 347 PF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
++.+-+.+..+.+++|+.|+++.|++..++ + ++-.++ -|+|+
T Consensus 11 ~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~---~--Li~~Gk--~L~d~ 52 (71)
T cd01808 11 KEEIEIAEDASVKDFKEAVSKKFKANQEQL---V--LIFAGK--ILKDT 52 (71)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCHHHE---E--EEECCe--EcCCC
Confidence 467888999999999999999999866444 2 343444 36765
No 103
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=20.68 E-value=4.8e+02 Score=23.11 Aligned_cols=66 Identities=26% Similarity=0.275 Sum_probs=44.8
Q ss_pred cceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 7 NRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 7 nRv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
+||.|.--....++++.=-|-+..+||=.|+...|-++|+++|..+ |.-+++ ..|. ...++.++-.
T Consensus 26 drIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~-flfVnn--~lp~------~s~~mg~lYe 91 (121)
T PTZ00380 26 GHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKV-TLAIEG--STPA------VTATVGDIAD 91 (121)
T ss_pred CccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHE-EEEECC--ccCC------ccchHHHHHH
Confidence 5777765444333333322358999999999999999999999995 666654 2332 3467777754
No 104
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=20.66 E-value=1.4e+02 Score=23.06 Aligned_cols=27 Identities=11% Similarity=0.359 Sum_probs=23.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNI 371 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi 371 (443)
|--|.+.+.+..+.+++|++|+++.|+
T Consensus 10 g~~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 10 QQTFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCC
Confidence 445678899999999999999999998
Done!