Query psy17539
Match_columns 443
No_of_seqs 171 out of 316
Neff 6.2
Searched_HMMs 29240
Date Sat Aug 17 01:07:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ylm_A Ubiquitin carboxyl-term 100.0 7.4E-66 2.5E-70 548.9 30.8 296 1-425 232-530 (530)
2 2ylm_A Ubiquitin carboxyl-term 99.5 7.9E-16 2.7E-20 163.9 1.6 208 25-325 150-427 (530)
3 3u30_A Ubiquitin, linear DI-ub 93.9 0.6 2.1E-05 41.5 11.8 100 263-375 31-136 (172)
4 3b08_A Polyubiquitin-C, ubiqui 93.7 0.66 2.3E-05 39.7 11.4 115 262-395 10-129 (152)
5 3rt3_B Ubiquitin-like protein 91.6 2.8 9.4E-05 36.4 12.6 114 262-395 12-134 (159)
6 2kvr_A Ubiquitin carboxyl-term 90.8 0.24 8.3E-06 42.8 4.7 35 25-59 59-93 (130)
7 1wjn_A Tubulin-folding protein 84.3 3.7 0.00013 32.8 7.8 70 8-79 9-79 (97)
8 4efo_A Serine/threonine-protei 82.6 1.6 5.5E-05 35.6 4.8 42 328-375 12-53 (94)
9 1oey_A P67-PHOX, neutrophil cy 82.3 1.3 4.4E-05 35.4 4.0 55 23-82 15-70 (83)
10 1v6e_A Cytoskeleton-associated 75.5 6 0.00021 31.5 6.2 48 8-57 7-54 (95)
11 1v5o_A 1700011N24RIK protein; 73.6 8 0.00027 31.2 6.6 50 7-56 6-56 (102)
12 2dzi_A Ubiquitin-like protein 73.1 7.9 0.00027 29.1 6.1 60 8-79 7-66 (81)
13 2bwf_A Ubiquitin-like protein 72.8 8.1 0.00028 28.7 6.0 50 21-79 13-62 (77)
14 4a3p_A Ubiquitin carboxyl-term 71.9 7.4 0.00025 36.0 6.7 56 23-81 141-197 (217)
15 3mtn_B UBA80, ubcep1, ubiquiti 70.1 9.1 0.00031 29.0 5.9 60 8-79 3-62 (85)
16 1t0y_A Tubulin folding cofacto 69.2 12 0.00042 31.2 7.0 48 8-57 6-53 (122)
17 4dbg_A Ranbp-type and C3HC4-ty 68.8 12 0.00039 31.0 6.5 47 8-55 24-70 (105)
18 3a9j_A Ubiquitin; protein comp 66.8 7.4 0.00025 28.7 4.6 49 22-79 11-59 (76)
19 1ndd_A NEDD8, protein (ubiquit 66.8 7.4 0.00025 28.7 4.6 50 21-79 10-59 (76)
20 1wh3_A 59 kDa 2'-5'-oligoadeny 66.5 15 0.0005 28.1 6.5 60 8-79 7-66 (87)
21 3n3k_B Ubiquitin; hydrolase, p 66.0 8.8 0.0003 29.1 5.0 46 8-56 3-48 (85)
22 2klc_A Ubiquilin-1; ubiquitin- 65.8 15 0.00052 29.5 6.6 58 9-79 26-83 (101)
23 3u30_A Ubiquitin, linear DI-ub 65.8 49 0.0017 28.7 10.6 98 162-292 39-136 (172)
24 3jyu_A Ubiquitin carboxyl-term 64.8 10 0.00035 35.4 6.1 37 23-59 153-190 (231)
25 2daf_A FLJ35834 protein; hypot 63.7 15 0.00053 31.0 6.4 51 20-79 25-75 (118)
26 1ip9_A BEM1 protein; ubiquitin 63.7 16 0.00055 29.1 6.1 55 21-81 21-75 (85)
27 2hj8_A Interferon-induced 17 k 63.3 19 0.00066 27.9 6.6 60 9-80 5-64 (88)
28 1wx8_A Riken cDNA 4931431F19; 63.0 13 0.00044 29.2 5.6 58 9-79 18-75 (96)
29 2kzr_A Ubiquitin thioesterase 63.0 7.6 0.00026 30.2 4.1 51 24-79 12-64 (86)
30 2l7r_A Ubiquitin-like protein 62.3 11 0.00038 29.7 5.1 60 7-80 18-77 (93)
31 2uyz_B Small ubiquitin-related 62.0 8 0.00027 29.1 4.0 44 345-395 13-56 (79)
32 1wju_A NEDD8 ultimate buster-1 61.7 12 0.00042 30.6 5.3 50 21-79 29-78 (100)
33 2kk8_A Uncharacterized protein 61.3 11 0.00038 29.3 4.8 61 9-80 11-71 (84)
34 3phx_B Ubiquitin-like protein 60.9 22 0.00077 26.5 6.4 61 7-79 3-63 (79)
35 2uyz_B Small ubiquitin-related 59.6 20 0.00068 26.8 5.9 59 9-79 4-62 (79)
36 4efo_A Serine/threonine-protei 59.2 13 0.00043 30.3 4.9 40 246-291 13-52 (94)
37 1wy8_A NP95-like ring finger p 59.0 29 0.001 26.5 7.0 61 8-79 7-68 (89)
38 3mtn_B UBA80, ubcep1, ubiquiti 58.9 11 0.00036 28.6 4.3 44 345-395 13-56 (85)
39 2kj6_A Tubulin folding cofacto 58.9 34 0.0012 27.5 7.5 54 22-79 27-82 (97)
40 3a9j_A Ubiquitin; protein comp 58.3 11 0.00036 27.8 4.1 44 345-395 10-53 (76)
41 1j8c_A Ubiquitin-like protein 58.1 24 0.00083 29.6 6.8 59 8-79 32-90 (125)
42 3phx_B Ubiquitin-like protein 57.7 11 0.00038 28.3 4.2 45 344-395 13-57 (79)
43 2kk8_A Uncharacterized protein 57.6 11 0.00037 29.3 4.2 29 345-373 20-48 (84)
44 1sif_A Ubiquitin; hydrophobic 57.5 11 0.00037 29.4 4.2 50 21-79 19-68 (88)
45 2kd0_A LRR repeats and ubiquit 57.0 13 0.00044 28.9 4.5 36 21-56 21-56 (85)
46 2kjr_A CG11242; UBL, ubiquitin 56.9 26 0.00089 28.0 6.4 66 8-79 15-82 (95)
47 4dwf_A HLA-B-associated transc 56.6 27 0.00091 26.9 6.4 59 9-79 6-64 (90)
48 3k9o_B Ubiquitin, UBB+1; E2-25 56.6 22 0.00076 27.7 5.9 50 21-79 11-60 (96)
49 3v6c_B Ubiquitin; structural g 56.4 23 0.0008 27.4 6.0 60 8-79 17-76 (91)
50 1we6_A Splicing factor, putati 56.2 25 0.00085 28.6 6.4 37 20-56 39-76 (111)
51 1yqb_A Ubiquilin 3; structural 55.7 24 0.00082 28.3 6.1 60 7-79 21-80 (100)
52 1uh6_A Ubiquitin-like 5; beta- 55.7 26 0.00088 28.6 6.2 59 9-79 29-87 (100)
53 2faz_A Ubiquitin-like containi 55.6 15 0.00053 27.3 4.7 45 9-56 3-49 (78)
54 2ojr_A Ubiquitin; lanthide-bin 55.5 27 0.00092 28.4 6.5 46 8-56 35-80 (111)
55 3v6c_B Ubiquitin; structural g 55.5 12 0.00043 29.1 4.2 44 345-395 27-70 (91)
56 1v86_A DNA segment, CHR 7, way 55.4 14 0.00049 29.3 4.6 34 22-55 27-60 (95)
57 3n3k_B Ubiquitin; hydrolase, p 55.4 11 0.00037 28.6 3.8 44 345-395 13-56 (85)
58 1wxv_A BAG-family molecular ch 55.0 27 0.00092 27.1 6.2 44 9-56 8-56 (92)
59 2kj6_A Tubulin folding cofacto 54.9 27 0.00094 28.1 6.3 29 263-291 27-55 (97)
60 1ndd_A NEDD8, protein (ubiquit 54.7 13 0.00045 27.2 4.1 44 345-395 10-53 (76)
61 1q1o_A Cell division control p 54.7 20 0.0007 29.3 5.4 40 8-47 7-48 (98)
62 1wx7_A Ubiquilin 3; ubiquitin- 54.6 29 0.001 27.8 6.5 58 9-79 18-75 (106)
63 3dbh_I NEDD8; cell cycle, acti 54.4 22 0.00076 27.0 5.5 50 21-79 22-71 (88)
64 3dbh_I NEDD8; cell cycle, acti 54.3 14 0.00047 28.3 4.2 31 345-375 22-52 (88)
65 4gdk_A Ubiquitin-like protein 54.1 67 0.0023 25.6 8.4 68 7-81 4-72 (91)
66 1wyw_B Ubiquitin-like protein 53.8 29 0.00099 27.5 6.2 50 21-79 31-80 (97)
67 1yx5_B Ubiquitin; proteasome, 53.5 17 0.00056 28.8 4.7 49 22-79 11-59 (98)
68 2dzi_A Ubiquitin-like protein 52.8 14 0.00049 27.6 4.1 44 345-395 17-60 (81)
69 4eew_A Large proline-rich prot 52.7 32 0.0011 26.2 6.2 60 8-79 17-76 (88)
70 2wyq_A HHR23A, UV excision rep 51.7 40 0.0014 25.4 6.6 60 8-79 5-67 (85)
71 2kan_A Uncharacterized protein 51.6 19 0.00066 28.5 4.8 59 8-79 15-74 (94)
72 3plu_A Ubiquitin-like modifier 51.1 70 0.0024 25.7 8.0 52 20-80 30-81 (93)
73 4fbj_B NEDD8; effector-HOST ta 50.2 17 0.00057 28.3 4.1 31 345-375 10-40 (88)
74 1wyw_B Ubiquitin-like protein 49.9 16 0.00054 29.1 4.0 44 345-395 31-74 (97)
75 2hj8_A Interferon-induced 17 k 49.8 15 0.00051 28.5 3.8 30 345-374 14-43 (88)
76 4hcn_B Polyubiquitin, ubiquiti 49.2 30 0.001 27.4 5.6 59 9-79 23-81 (98)
77 1wgg_A Ubiquitin carboxyl-term 49.0 25 0.00085 28.0 5.1 43 9-55 8-51 (96)
78 4eew_A Large proline-rich prot 48.5 18 0.00061 27.8 4.1 44 345-395 27-70 (88)
79 4dwf_A HLA-B-associated transc 48.3 18 0.00063 27.8 4.1 49 345-401 15-63 (90)
80 2bwf_A Ubiquitin-like protein 48.2 18 0.00061 26.7 3.9 44 345-395 13-56 (77)
81 3m63_B Ubiquitin domain-contai 48.0 11 0.00037 30.4 2.8 36 21-56 37-72 (101)
82 1v6e_A Cytoskeleton-associated 47.9 18 0.00062 28.6 4.1 29 263-291 19-47 (95)
83 3plu_A Ubiquitin-like modifier 47.9 25 0.00087 28.4 4.9 45 264-314 33-77 (93)
84 2dzm_A FAS-associated factor 1 47.7 52 0.0018 26.6 6.9 59 11-79 10-68 (100)
85 1wgd_A Homocysteine-responsive 47.5 50 0.0017 25.6 6.6 63 8-80 7-71 (93)
86 3a4r_A Nfatc2-interacting prot 47.0 46 0.0016 25.4 6.2 48 23-79 20-67 (79)
87 4hcn_B Polyubiquitin, ubiquiti 46.9 19 0.00066 28.5 4.1 44 345-395 32-75 (98)
88 3k9o_B Ubiquitin, UBB+1; E2-25 46.1 21 0.0007 27.9 4.1 44 345-395 11-54 (96)
89 1sif_A Ubiquitin; hydrophobic 45.8 21 0.00071 27.7 4.1 44 345-395 19-62 (88)
90 1v5t_A 8430435I17RIK protein; 45.8 12 0.00042 29.3 2.7 34 345-381 16-50 (90)
91 1wh3_A 59 kDa 2'-5'-oligoadeny 45.4 18 0.00063 27.6 3.7 44 345-395 17-60 (87)
92 4fbj_B NEDD8; effector-HOST ta 45.1 23 0.00077 27.5 4.2 36 21-56 10-45 (88)
93 2kdi_A Ubiquitin, vacuolar pro 45.0 24 0.00082 29.0 4.5 36 21-56 19-54 (114)
94 1we7_A SF3A1 protein; structur 45.0 49 0.0017 26.9 6.5 50 22-80 46-95 (115)
95 1uh6_A Ubiquitin-like 5; beta- 44.4 24 0.00082 28.8 4.3 44 345-395 38-81 (100)
96 4b6w_A Tubulin-specific chaper 44.1 33 0.0011 26.9 5.0 55 21-79 14-70 (86)
97 1x1m_A Ubiquitin-like protein 43.3 42 0.0014 27.0 5.7 63 9-80 13-87 (107)
98 2l7r_A Ubiquitin-like protein 43.3 24 0.00082 27.7 4.1 30 345-374 27-56 (93)
99 1v86_A DNA segment, CHR 7, way 43.2 19 0.00064 28.6 3.5 29 345-373 26-54 (95)
100 3rt3_B Ubiquitin-like protein 43.0 52 0.0018 28.0 6.6 52 21-79 12-63 (159)
101 1wm3_A Ubiquitin-like protein 42.7 29 0.001 25.9 4.4 35 345-382 11-45 (72)
102 1yx5_B Ubiquitin; proteasome, 42.7 24 0.00083 27.7 4.1 44 345-395 10-53 (98)
103 3vdz_A Ubiquitin-40S ribosomal 42.6 52 0.0018 26.7 6.2 46 8-56 35-80 (111)
104 1v5t_A 8430435I17RIK protein; 42.5 20 0.00067 28.1 3.5 52 22-79 17-69 (90)
105 3vdz_A Ubiquitin-40S ribosomal 42.4 25 0.00086 28.7 4.2 44 345-395 45-88 (111)
106 4dbg_A Ranbp-type and C3HC4-ty 42.4 35 0.0012 28.1 5.0 41 335-376 27-67 (105)
107 2kd0_A LRR repeats and ubiquit 42.0 21 0.00072 27.6 3.5 44 345-395 21-64 (85)
108 1ttn_A DC-UBP, dendritic cell- 42.0 37 0.0013 27.3 5.1 59 9-79 24-82 (106)
109 2faz_A Ubiquitin-like containi 41.7 32 0.0011 25.5 4.5 44 345-395 12-57 (78)
110 1wgg_A Ubiquitin carboxyl-term 41.1 20 0.00069 28.5 3.4 29 345-373 16-45 (96)
111 1wx8_A Riken cDNA 4931431F19; 40.4 25 0.00086 27.5 3.8 30 345-374 26-55 (96)
112 2kan_A Uncharacterized protein 40.0 26 0.00088 27.7 3.8 42 347-395 26-67 (94)
113 1wf9_A NPL4 family protein; be 40.0 40 0.0014 27.2 5.1 46 8-57 7-53 (107)
114 3b08_A Polyubiquitin-C, ubiqui 39.7 32 0.0011 28.8 4.6 49 22-79 11-59 (152)
115 2pjh_A Protein NPL4, nuclear p 39.5 15 0.00052 28.5 2.3 53 23-79 15-67 (80)
116 2klc_A Ubiquilin-1; ubiquitin- 39.3 31 0.0011 27.6 4.3 44 345-395 34-77 (101)
117 2io1_B Small ubiquitin-related 39.2 63 0.0022 25.6 6.0 35 22-56 18-52 (94)
118 2kjr_A CG11242; UBL, ubiquitin 39.1 24 0.00083 28.2 3.5 29 346-374 28-56 (95)
119 1uel_A HHR23B, UV excision rep 38.4 43 0.0015 26.2 4.9 36 21-56 10-48 (95)
120 2io0_B Small ubiquitin-related 37.7 38 0.0013 26.9 4.5 36 345-383 15-50 (91)
121 2io1_B Small ubiquitin-related 37.5 40 0.0014 26.8 4.6 36 345-383 17-52 (94)
122 1wy8_A NP95-like ring finger p 37.4 33 0.0011 26.2 4.0 30 345-374 17-48 (89)
123 1wm3_A Ubiquitin-like protein 36.6 48 0.0016 24.7 4.7 35 22-56 12-46 (72)
124 2d07_B Ubiquitin-like protein 36.2 82 0.0028 24.8 6.3 35 22-56 28-62 (93)
125 2io0_B Small ubiquitin-related 36.2 85 0.0029 24.8 6.3 35 22-56 16-50 (91)
126 1v5o_A 1700011N24RIK protein; 36.2 38 0.0013 27.0 4.3 30 345-374 21-50 (102)
127 2dzm_A FAS-associated factor 1 36.0 32 0.0011 27.9 3.8 30 345-374 18-47 (100)
128 2ojr_A Ubiquitin; lanthide-bin 35.8 33 0.0011 27.8 3.9 44 345-395 45-88 (111)
129 1t0y_A Tubulin folding cofacto 35.6 29 0.001 28.8 3.6 29 263-291 18-46 (122)
130 4b6w_A Tubulin-specific chaper 34.6 27 0.00091 27.4 3.0 28 265-292 17-44 (86)
131 4iiw_A LMO1499 protein; struct 34.4 37 0.0013 33.8 4.7 33 346-378 107-140 (349)
132 2kdi_A Ubiquitin, vacuolar pro 33.5 40 0.0014 27.6 4.1 30 345-374 19-48 (114)
133 3b1l_X E3 ubiquitin-protein li 39.7 8.9 0.0003 28.5 0.0 36 21-56 10-45 (76)
134 3m62_B UV excision repair prot 33.3 30 0.001 27.9 3.3 31 345-375 11-41 (106)
135 1we6_A Splicing factor, putati 33.3 40 0.0014 27.2 4.1 30 344-373 39-69 (111)
136 2k8h_A Small ubiquitin protein 33.1 1.2E+02 0.0042 24.8 7.0 49 22-79 37-85 (110)
137 3m63_B Ubiquitin domain-contai 32.2 24 0.00082 28.4 2.4 31 345-375 37-67 (101)
138 2fnj_B Transcription elongatio 31.7 63 0.0021 27.1 5.0 50 22-80 12-61 (118)
139 3m62_B UV excision repair prot 31.6 32 0.0011 27.8 3.1 36 21-56 11-46 (106)
140 1ttn_A DC-UBP, dendritic cell- 31.3 29 0.001 27.9 2.9 30 345-374 33-62 (106)
141 1wf9_A NPL4 family protein; be 30.7 42 0.0014 27.1 3.7 27 349-375 20-47 (107)
142 1j8c_A Ubiquitin-like protein 30.2 45 0.0015 27.9 3.9 44 345-395 41-84 (125)
143 2wyq_A HHR23A, UV excision rep 30.0 56 0.0019 24.5 4.2 44 345-395 15-61 (85)
144 1yqb_A Ubiquilin 3; structural 29.6 50 0.0017 26.3 4.0 41 348-395 34-74 (100)
145 2fnj_B Transcription elongatio 28.9 50 0.0017 27.7 4.0 42 347-395 13-54 (118)
146 3gs2_A E3 ubiquitin-protein li 28.8 1.1E+02 0.0038 25.3 5.8 87 7-95 2-108 (111)
147 2daf_A FLJ35834 protein; hypot 28.3 1.2E+02 0.004 25.6 6.1 65 265-341 29-93 (118)
148 1wz0_A Ubiquitin-like protein 28.0 1.1E+02 0.0039 24.7 5.9 35 22-56 35-69 (104)
149 1wx7_A Ubiquilin 3; ubiquitin- 27.9 50 0.0017 26.4 3.7 41 348-395 29-69 (106)
150 4a20_A Ubiquitin-like protein 27.7 1.2E+02 0.0042 24.1 6.0 61 7-79 18-81 (98)
151 2jxx_A Nfatc2-interacting prot 27.7 1.2E+02 0.0041 24.4 5.9 34 23-56 38-71 (97)
152 1wxv_A BAG-family molecular ch 27.4 60 0.002 25.0 4.0 43 346-395 17-64 (92)
153 1oey_A P67-PHOX, neutrophil cy 27.2 67 0.0023 25.3 4.2 27 348-374 16-42 (83)
154 1uel_A HHR23B, UV excision rep 27.0 58 0.002 25.4 3.9 44 345-395 10-56 (95)
155 3a4r_A Nfatc2-interacting prot 27.0 65 0.0022 24.5 4.0 36 345-383 17-53 (79)
156 3b1l_X E3 ubiquitin-protein li 32.6 14 0.00047 27.4 0.0 30 345-374 10-39 (76)
157 4ajy_B Transcription elongatio 26.1 53 0.0018 27.6 3.6 46 343-395 9-54 (118)
158 2kvr_A Ubiquitin carboxyl-term 26.1 51 0.0018 28.0 3.6 34 348-384 58-91 (130)
159 1q1o_A Cell division control p 25.8 65 0.0022 26.3 3.9 37 335-372 11-49 (98)
160 3l0w_B Monoubiquitinated proli 25.2 57 0.002 28.7 3.9 31 345-375 10-40 (169)
161 1wju_A NEDD8 ultimate buster-1 25.2 64 0.0022 26.2 3.8 44 345-395 29-72 (100)
162 1we7_A SF3A1 protein; structur 24.9 53 0.0018 26.7 3.4 46 343-395 43-88 (115)
163 1wgd_A Homocysteine-responsive 24.7 70 0.0024 24.7 3.9 43 346-395 20-64 (93)
164 1pqs_A Cell division control p 24.5 46 0.0016 25.9 2.7 26 23-48 3-28 (77)
165 2d07_B Ubiquitin-like protein 23.9 1.2E+02 0.0041 23.8 5.2 35 345-382 27-61 (93)
166 2eke_C Ubiquitin-like protein 23.7 1.4E+02 0.005 24.2 5.8 35 22-56 41-75 (106)
167 3w1s_C Ubiquitin-like protein 23.6 1.4E+02 0.0046 23.9 5.4 42 7-48 7-49 (91)
168 1v2y_A 3300001G02RIK protein; 23.2 44 0.0015 27.4 2.5 29 262-290 17-45 (105)
169 1wz3_A Autophagy 12B, ATG12B, 22.9 1.8E+02 0.0061 23.4 6.1 42 7-48 12-54 (96)
170 3abf_A 4-oxalocrotonate tautom 22.6 71 0.0024 22.5 3.3 24 34-57 21-44 (64)
171 4gdk_A Ubiquitin-like protein 22.6 68 0.0023 25.6 3.4 26 266-291 23-48 (91)
172 3q3f_A Ribonuclease/ubiquitin 22.2 79 0.0027 28.6 4.2 31 345-375 115-145 (189)
173 2lxa_A Ubiquitin-like protein 22.0 1.1E+02 0.0038 23.8 4.6 59 10-80 3-64 (87)
174 2k8h_A Small ubiquitin protein 21.9 92 0.0032 25.6 4.3 35 345-382 36-70 (110)
175 1wjn_A Tubulin-folding protein 21.3 68 0.0023 25.2 3.2 30 262-291 22-51 (97)
176 2daj_A KIAA0977 protein, COBL- 21.1 1.9E+02 0.0065 23.1 5.6 50 24-79 23-72 (91)
177 3q3f_A Ribonuclease/ubiquitin 21.0 1.3E+02 0.0045 27.1 5.5 60 8-79 105-164 (189)
178 2pjh_A Protein NPL4, nuclear p 20.6 66 0.0023 24.7 2.9 29 348-376 16-44 (80)
No 1
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.4e-66 Score=548.88 Aligned_cols=296 Identities=43% Similarity=0.736 Sum_probs=264.1
Q ss_pred CccccccceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539 1 MFLDLFNRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL 80 (443)
Q Consensus 1 y~~~L~nRv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l 80 (443)
||+||+||+.|+|+|...+++++|+||||++|||+|||++||++||+||++||||++++|++.|+++++++.+++|+|||
T Consensus 232 yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l 311 (530)
T 2ylm_A 232 YFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLL 311 (530)
T ss_dssp HHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHS
T ss_pred HHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHh
Confidence 79999999999999987788889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeeeeccchhhhhhccCceEEEEecCCCCCCCCCCcccCeeeeeeccCCCCCCCcceeeeeccchhhhc
Q psy17539 81 APINKPKMPKKMHYQKLSIPVVELINKRPFKVQAYKDTPGNPLPHNFEGTLKDILAPINKPKMPKKMHYQKLSIPVVELI 160 (443)
Q Consensus 81 ~~~~~~~~~~~l~YE~L~~~V~E~e~~~~~kv~~~~~~P~~~ik~~~~~~l~~iL~p~~~~~~~~~l~Yq~l~~~i~ele 160 (443)
.++++ +.++.+|||+|++||+|+|+++++||.|+ ++.++ .+.+.+++|
T Consensus 312 ~~~~~-~~~~~l~YevL~ipl~ElE~~r~~kv~w~----~~~~~----~~~~~l~vp----------------------- 359 (530)
T 2ylm_A 312 QFFKP-RQPKKLYYQQLKMKITDFENRRSFKCIWL----NSQFR----EEEITLYPD----------------------- 359 (530)
T ss_dssp TTSCS-SSCCEEEEEECSSCHHHHHSBCCEEEEEE----CTTSC----EEEEEECCB-----------------------
T ss_pred hcccC-CCCCeEEEEECCCCHHHHhhCceEEEEEE----CCCCc----eEEEEEEcC-----------------------
Confidence 85554 35689999999999999999999999999 55555 447888877
Q ss_pred ccCCceeeHHHHHHhhcccccCccccCCCCCCCCceEEEEEecceeeeecCccccccccccCCC-cceeEEEeecCcccc
Q psy17539 161 NKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNA-TTKIYRLEEIPQDEV 239 (443)
Q Consensus 161 ~K~~~tV~~dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~~l~~~~~i~~~~~~~~-~~~~~~~E~ip~de~ 239 (443)
|++ +| +|+++++++++++++ ++++++|||++++|||+++++.+.+++++ ++ ....+|+|+||++|+
T Consensus 360 -K~g-tV-~Dll~~l~k~~~~~~-------~~~~~lRl~ev~~~ki~ki~~~~~~i~~i---~d~~~~~~rieeip~ee~ 426 (530)
T 2ylm_A 360 -KHG-CV-RDLLEECKKAVELGE-------KASGKLRLLEIVSYKIIGVHQEDELLECL---SPATSRTFRIEEIPLDQV 426 (530)
T ss_dssp -TTC-BH-HHHHHHHHTTCCCCT-------TCCCCEEEEEEETTEEEEEECTTSBGGGS---CCCTTCEEEEEECCGGGS
T ss_pred -CCC-CH-HHHHHHHHHhcCCCc-------CCcccEEEEEEECCEEEEecCCCcccccc---cccccceEEEEECCHHHh
Confidence 999 99 999999999999876 78899999999999999999999999988 33 245677999999888
Q ss_pred CC-CCCCeEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCccccccc
Q psy17539 240 SL-DPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMAN 318 (443)
Q Consensus 240 ~~-~~~e~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~~E~ 318 (443)
++ .+
T Consensus 427 ~~~~~--------------------------------------------------------------------------- 431 (530)
T 2ylm_A 427 DIDKE--------------------------------------------------------------------------- 431 (530)
T ss_dssp SCCTT---------------------------------------------------------------------------
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 76 54
Q ss_pred CCCCCCCCCCceEeEEEeecCCcccCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCCCCc
Q psy17539 319 APPSKSNPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDC 398 (443)
Q Consensus 319 ip~ee~~~~~~lI~vfHF~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd~d~ 398 (443)
++++|+||||+|++++.||+||+|+|++||+|++||+||++||||++|||+|||||||+.+++.||+|| |+
T Consensus 432 --------~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~-d~ 502 (530)
T 2ylm_A 432 --------NEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINED-EY 502 (530)
T ss_dssp --------TEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTT-TC
T ss_pred --------CcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCc-cc
Confidence 346677888888889999999999999999999999999999999999999999999999999999998 88
Q ss_pred ccccccccccc-cCCCCcceeeecCCCC
Q psy17539 399 PVSINQFRSNI-SHQDYKVWLGLDHINK 425 (443)
Q Consensus 399 ~~~l~~~~~~~-~~~~~~~~LGLDH~dk 425 (443)
++++.+|.+.. ..+.+++||||||+||
T Consensus 503 ~~~l~~~~~~~~~~~~~~~~LgLdH~~k 530 (530)
T 2ylm_A 503 EVNLKDFEPQPGNMSHPRPWLGLDHFNK 530 (530)
T ss_dssp CCCGGGTSCSTTCSSSCCCEEEEECCC-
T ss_pred eehhhhhhccccccCCccceecccCCCC
Confidence 88998876421 1134688999999997
No 2
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=99.54 E-value=7.9e-16 Score=163.90 Aligned_cols=208 Identities=23% Similarity=0.406 Sum_probs=155.2
Q ss_pred EEEEcccCCHHHHHHHHHHHcCCCCc-cEEEEeeccCCCCCCC--CccCCCCCcHHHh----------------------
Q psy17539 25 TLELSLKMTYEQLVALVAQHLNTDKK-LIQMFKVQAYKDTPGN--PLPHNFEGTLKDI---------------------- 79 (443)
Q Consensus 25 ~l~Ls~~~tY~~la~~Va~~l~~dp~-~lrf~~~~~~~~~p~~--~i~~~~~~~L~d~---------------------- 79 (443)
.+.+++..+-++|...|-+.+|.+|+ .|+||--.. |+. ++.- .+.|+.+.
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~----~~~ie~l~~-~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~ 224 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVK----PNLTERIQD-YDVSLDKALDELMDGDIIVFQKDDPENDNS 224 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEE----TTEEEECCC-SSSBHHHHSTTCCTTEEEEEEECCGGGGGS
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecC----CCceeEccc-ccccHHHHHhcccCCCEEEEEecCCccccc
Confidence 46777777778888888888888765 788876432 221 1220 11222222
Q ss_pred --------cC---------------C---CCCCCCCceeeeeeccchhhhhhccCceEEEEe-----cCCCCCCCCCCcc
Q psy17539 80 --------LA---------------P---INKPKMPKKMHYQKLSIPVVELINKRPFKVQAY-----KDTPGNPLPHNFE 128 (443)
Q Consensus 80 --------l~---------------~---~~~~~~~~~l~YE~L~~~V~E~e~~~~~kv~~~-----~~~P~~~ik~~~~ 128 (443)
+. + ...-.+++.|.|++|+..||++++.+|.+++++ ++.|++.++++..
T Consensus 225 ~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~ 304 (530)
T 2ylm_A 225 ELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYE 304 (530)
T ss_dssp SSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCC
T ss_pred cCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCC
Confidence 10 0 001145788999999999999999999999876 4789999998888
Q ss_pred cCeeeeeeccCCCCCCCcceeeeeccchhhhcccCCceeeHHHHHHhhcccccCccccCCCCCCCCceEEEEEecceeee
Q psy17539 129 GTLKDILAPINKPKMPKKMHYQKLSIPVVELINKRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITA 208 (443)
Q Consensus 129 ~~l~~iL~p~~~~~~~~~l~Yq~l~~~i~ele~K~~~tV~~dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~ 208 (443)
.++.+||.+ ..+.+++.||||+|++|+.|+|+|+.++| . |++...+
T Consensus 305 ~~L~d~l~~-~~~~~~~~l~YevL~ipl~ElE~~r~~kv-~-w~~~~~~------------------------------- 350 (530)
T 2ylm_A 305 GTLRDLLQF-FKPRQPKKLYYQQLKMKITDFENRRSFKC-I-WLNSQFR------------------------------- 350 (530)
T ss_dssp SCHHHHSTT-SCSSSCCEEEEEECSSCHHHHHSBCCEEE-E-EECTTSC-------------------------------
T ss_pred CcHHHHhhc-ccCCCCCeEEEEECCCCHHHHhhCceEEE-E-EECCCCc-------------------------------
Confidence 999999954 34457799999999999999999999999 5 3211100
Q ss_pred ecCccccccccccCCCcceeEEEeecCccccCCCCCCeEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCC
Q psy17539 209 ELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNI 288 (443)
Q Consensus 209 ~l~~~~~i~~~~~~~~~~~~~~~E~ip~de~~~~~~e~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l 288 (443)
.+ .+.++++|++||+|+.+.|++++++
T Consensus 351 ----------------------~~-------------------------------~~~l~vpK~gtV~Dll~~l~k~~~~ 377 (530)
T 2ylm_A 351 ----------------------EE-------------------------------EITLYPDKHGCVRDLLEECKKAVEL 377 (530)
T ss_dssp ----------------------EE-------------------------------EEEECCBTTCBHHHHHHHHHTTCCC
T ss_pred ----------------------eE-------------------------------EEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 00 1457788999999999999999999
Q ss_pred CccccceeEEEeecCCCCcCC------------C--CcccccccCCCCCCC
Q psy17539 289 QEKEFEKVRVQDKIHPGRESN------------P--WPSAYMANAPPSKSN 325 (443)
Q Consensus 289 ~~~~~~kir~~e~~~~~k~~k------------~--~~~~~~E~ip~ee~~ 325 (443)
++++.+++|++|+ ++||+++ + ++++++|+||+||.+
T Consensus 378 ~~~~~~~lRl~ev-~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~ 427 (530)
T 2ylm_A 378 GEKASGKLRLLEI-VSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVD 427 (530)
T ss_dssp CTTCCCCEEEEEE-ETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSS
T ss_pred CcCCcccEEEEEE-ECCEEEEecCCCcccccccccccceEEEEECCHHHhc
Confidence 9999999999996 9999875 2 667899999988753
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=93.92 E-value=0.6 Score=41.47 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=65.4
Q ss_pred CceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCcccccccCCCCCC------CCCCceEeEEEe
Q psy17539 263 YPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKS------NPDELLIPVAHF 336 (443)
Q Consensus 263 ipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~~E~ip~ee~------~~~~~lI~vfHF 336 (443)
-.|.+.+.++.|+.++|+.++++.|++.+. .|+. +.|+..++-.++-.=.|.+... ..+...|.|
T Consensus 31 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~---QrL~---~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~V--- 101 (172)
T 3u30_A 31 KTITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRLI---FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFV--- 101 (172)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGG---EEEE---ETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEEE---
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChHH---EEEE---ECCccccccCCHhHcCCcccceeeeeeccccccccee---
Confidence 346788999999999999999999997643 3442 4556655433321112211100 011222222
Q ss_pred ecCCcccCCCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 337 QKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 337 ~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
+ ...|-.|.+.+.+.++..++|++|+.++|++...
T Consensus 102 -k---~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~ 136 (172)
T 3u30_A 102 -K---TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 136 (172)
T ss_dssp -E---ESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred -e---cccCcceeEEecCCCCHHHHHHHHHHHhCCCcee
Confidence 1 2346778889999999999999999999998654
No 4
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=93.74 E-value=0.66 Score=39.70 Aligned_cols=115 Identities=15% Similarity=0.271 Sum_probs=70.1
Q ss_pred CCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCcccccccCCCCCCCCCCceEeEEEeecC--
Q psy17539 262 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDELLIPVAHFQKD-- 339 (443)
Q Consensus 262 gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~~E~ip~ee~~~~~~lI~vfHF~ke-- 339 (443)
|-.|.+.+.++.|+.|+++.++++.|++.. ..++. +.|+..++-.++-.-.+. +++ .|++.--...
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~---~q~L~---~~g~~L~d~~tL~~~~i~-----~~~-~l~l~~~~~~~~ 77 (152)
T 3b08_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRLI---FAGKQLEDGRTLSDYNIQ-----KES-TLHLVLRLRGGM 77 (152)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGG---GEEEE---ETTEECCTTSBTGGGTCC-----TTC-EEEEEECCTTCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChH---HeEEE---ECCeECcCcccHHHhccC-----CCC-eeEEEeeccccc
Confidence 335677888999999999999999999764 34443 345554432222111121 111 1211110000
Q ss_pred ---CcccCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 340 ---IHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 340 ---~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
....+|-.|.+.+.+..+.+++|++|++++|++.. ..++ +-.+ .-|+|+
T Consensus 78 ~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---~qrL--~~~g--~~L~d~ 129 (152)
T 3b08_A 78 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFAG--KQLEDG 129 (152)
T ss_dssp EEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGG---GEEE--EETT--EECCTT
T ss_pred ceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChh---hEEE--EECC--EECCCC
Confidence 01235777889999999999999999999999844 3443 3233 346665
No 5
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=91.62 E-value=2.8 Score=36.41 Aligned_cols=114 Identities=12% Similarity=0.228 Sum_probs=69.9
Q ss_pred CCceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecC-CCCcCCCCcccccccCCCCCCCCCCceEeEEE-----
Q psy17539 262 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIH-PGRESNPWPSAYMANAPPSKSNPDELLIPVAH----- 335 (443)
Q Consensus 262 gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~-~~k~~k~~~~~~~E~ip~ee~~~~~~lI~vfH----- 335 (443)
|-.|.+.+.+..|+.++|+.++++.|++... -|+.- + .|+..++-.++-.=.|. ++..+..+.-
T Consensus 12 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~---QrL~~--~~~g~~L~d~~tL~~y~i~-----~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 12 GNEFQVSLSSSMSVSELKAQITQKIGVHAFQ---QRLAV--HPSGVALQDRVPLASQGLG-----PGSTVLLVVDKSDEP 81 (159)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHCCCGGG---EEEEE--ETTCCBCCTTSCGGGGTCC-----TTCEEEEEECCCCCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHH---EEEEE--cCCCCCCCCCCCHHHcCCC-----CCCEEEEEccCCCCc
Confidence 4456788889999999999999999997643 33321 3 45665543322111121 1111111110
Q ss_pred ---eecCCcccCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 336 ---FQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 336 ---F~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-|.. .|--|.+.+.+.++.+++|++|+++.|++..+ .++ +-.+ .-|+|+
T Consensus 82 m~i~vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---q~L--~~~G--~~L~d~ 134 (159)
T 3rt3_B 82 LSILVRNN---KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL---FWL--TFEG--KPLEDQ 134 (159)
T ss_dssp EEEEEECT---TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG---EEE--EETT--EECCTT
T ss_pred EEEEEECC---CCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHH---EEE--EECC--eecCCC
Confidence 11222 35667789999999999999999999998543 333 3334 346765
No 6
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=90.79 E-value=0.24 Score=42.83 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=31.9
Q ss_pred EEEEcccCCHHHHHHHHHHHcCCCCccEEEEeecc
Q psy17539 25 TLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQA 59 (443)
Q Consensus 25 ~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~ 59 (443)
++-+-++|+..++.+.||+.+|++++.+|||....
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~ 93 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQA 93 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeec
Confidence 56778999999999999999999999999998743
No 7
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.33 E-value=3.7 Score=32.82 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=48.2
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccC-CCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPH-NFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~-~~~~~L~d~ 79 (443)
.|.|+++.....+...++..++..||-.+|-.+|++..|++|...|++-... +.|...+.. ++..+|..+
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~--~~~~~~~~L~~d~~~L~~y 79 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESS--KMPGREIELENDLQPLQFY 79 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECT--TSCSCEEECCCSSSBSGGG
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcC--CCCceeeccCCCcccHhhc
Confidence 4566665432233456999999999999999999999999999999986632 123333322 344556544
No 8
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=82.61 E-value=1.6 Score=35.64 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=33.6
Q ss_pred CceEeEEEeecCCcccCCCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 328 ELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 328 ~~lI~vfHF~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
-++|+||+-..- ..-.+.|.+.|++...|+||++++||+...
T Consensus 12 rkvvHVf~~~~a------~~h~v~I~~~etv~~~ke~V~eqTgIp~~~ 53 (94)
T 4efo_A 12 RMVIHVFSLQQM------TAHKIYIHSYNTATIFHELVYKQTKIISSN 53 (94)
T ss_dssp EEEEEEEETTTT------EEEEEEEETTCBHHHHHHHHHHHHCCCGGG
T ss_pred ceeEEEEEcccc------eEEEEEeccchHHHHHHHHHHHHhCCCHHH
Confidence 467788776653 334588899999999999999999999853
No 9
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=82.27 E-value=1.3 Score=35.41 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=42.1
Q ss_pred CeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCC-CccCCCCCcHHHhcCC
Q psy17539 23 GFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGN-PLPHNFEGTLKDILAP 82 (443)
Q Consensus 23 ~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~-~i~~~~~~~L~d~l~~ 82 (443)
++.+.++...+|.+|..+|+++|++.+++++|.=... +.. -+ ...+..|.+.++.
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~----~s~~~v-i~~d~dl~~aw~~ 70 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR----DSNELV-PLSEDSMKDAWGQ 70 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT----TCSSCE-ECCTTTHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC----CCCCee-ccChHHHHHHHHh
Confidence 4889999999999999999999999999988854322 222 23 4455778877763
No 10
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.52 E-value=6 Score=31.48 Aligned_cols=48 Identities=8% Similarity=-0.044 Sum_probs=40.2
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEee
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKV 57 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~ 57 (443)
.|.|.++....+ ..+++.++..+|-.+|-++|+++.|++|+..||+-.
T Consensus 7 ~v~l~I~~~~~~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 7 GVMVFISSSLNS--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEEEETTSS--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred EEEEEEEECCCC--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 467777764332 469999999999999999999999999999999865
No 11
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=73.59 E-value=8 Score=31.16 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=39.9
Q ss_pred cceEEEEEeCCC-CCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 7 NRVEVTFCDKTI-LNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 7 nRv~V~F~~~~~-~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
.++.|+++-... .....|++.++..+|-.+|-++|++..|++|+..||+-
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 346666655422 22356999999999999999999999999999999974
No 12
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.08 E-value=7.9 Score=29.10 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=44.6
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.+.|.++.. +...|++.++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|+++
T Consensus 7 ~m~i~vk~~---~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~-------gk~L--~d~~tL~~~ 66 (81)
T 2dzi_A 7 GMQLTVKAL---QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK-------GKAL--ADGKRLSDY 66 (81)
T ss_dssp SEEEEEEET---TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET-------TEEC--CTTSBGGGG
T ss_pred cEEEEEEeC---CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC-------CeEC--CCCCcHHHc
Confidence 355555532 23568999999999999999999999999999998742 2222 345677776
No 13
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=72.77 E-value=8.1 Score=28.73 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=39.5
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...|++.++...|-.+|-++|++..|++|+..||.-. | ..+ .++.+|+++
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~----g---k~L--~d~~tL~~~ 62 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS----G---KIL--KDDQTVESY 62 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET----T---EEC--CTTSBTGGG
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC----C---eEc--CCCCCHHHc
Confidence 3459999999999999999999999999999999742 2 222 345677766
No 14
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=71.91 E-value=7.4 Score=36.04 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=42.4
Q ss_pred CeEEEEcccCCHHHHHHHHHHHcCCCCc-cEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 23 GFTLELSLKMTYEQLVALVAQHLNTDKK-LIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 23 ~F~l~Ls~~~tY~~la~~Va~~l~~dp~-~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
.++..+|+..|..+|-+.|.+.++++++ .+|+|..+..+. ...-.+.+.||.+.-.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~---~~~L~~~~~tl~~~~l 197 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNT---FEPLNKPDSTIQDAGL 197 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTE---EEECCCTTSBHHHHTC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCC---eeecCCCCCCHHHhCC
Confidence 4789999999999999999999999997 799999864111 1222234568877643
No 15
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=70.11 E-value=9.1 Score=28.98 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=44.3
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
++.|.++.. +...|++.++...|-.+|-++|++..+++|+..||+-. +..+ .++.+|+++
T Consensus 3 ~m~i~vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~-------g~~L--~d~~tL~~~ 62 (85)
T 3mtn_B 3 HMQIFVKTL---TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-------GKQL--EDGRTLSDY 62 (85)
T ss_dssp CEEEEEECT---TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET-------TEEC--CTTSBTGGG
T ss_pred eEEEEEEcC---CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC-------CEEC--CCCCCHHHc
Confidence 345555543 23569999999999999999999999999999999842 2222 345677765
No 16
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=69.24 E-value=12 Score=31.19 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=40.2
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEee
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKV 57 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~ 57 (443)
.|.|.++....+ ..+++.++..+|-.+|-++|+++.|++|...||+-.
T Consensus 6 ~v~l~V~~~~~~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 6 VYDLEITTNATD--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp EEEEEEEESSCC--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred EEEEEEEECCCC--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 466777664322 458999999999999999999999999999999875
No 17
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=68.81 E-value=12 Score=31.05 Aligned_cols=47 Identities=21% Similarity=0.126 Sum_probs=39.6
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEE
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMF 55 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~ 55 (443)
|+.|+|++.... ...+++.+...+|=.+|=++|++..|++|+.-|+.
T Consensus 24 ~l~v~v~d~~s~-~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli 70 (105)
T 4dbg_A 24 RLWVSVEDAQMH-TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV 70 (105)
T ss_dssp EEEEEEEESSSC-CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEEccCCC-CceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe
Confidence 567788876532 25699999999999999999999999999999954
No 18
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=66.82 E-value=7.4 Score=28.69 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=39.4
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
..|++.++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|+++
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~-------g~~L--~d~~tL~~~ 59 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-------GKQL--EDGRTLSDY 59 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-------TEEC--CTTCBTGGG
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC-------CeEC--CCCCcHHHc
Confidence 468999999999999999999999999999999752 2222 345677766
No 19
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=66.79 E-value=7.4 Score=28.69 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=39.8
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...+++.++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|+++
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~-------g~~L--~d~~tL~~~ 59 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS-------GKQM--NDEKTAADY 59 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-------TEEC--CTTSBGGGG
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC-------CEEC--CCCCcHHHc
Confidence 3458999999999999999999999999999998742 2222 345677776
No 20
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.51 E-value=15 Score=28.11 Aligned_cols=60 Identities=12% Similarity=-0.035 Sum_probs=45.2
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.+.|.++... ...|++.++...|-.+|-++|++..+++|+..||+-. + ..+ .++.+|+++
T Consensus 7 ~m~i~Vk~~~---g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~----G---k~L--~d~~tL~~~ 66 (87)
T 1wh3_A 7 GIQVFVKNPD---GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ----G---QVL--QDWLGLGIY 66 (87)
T ss_dssp SEEEEEEETT---TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET----T---EEC--CSSSBHHHH
T ss_pred CEEEEEEcCC---CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC----C---EEc--cCCCCHHHC
Confidence 3555555432 3468999999999999999999999999999999742 2 222 356788877
No 21
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=65.98 E-value=8.8 Score=29.13 Aligned_cols=46 Identities=11% Similarity=0.072 Sum_probs=37.2
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
++.|.++.. +...|++.++...|=.+|-++|+++.+++|+..||+-
T Consensus 3 ~m~i~vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 3 HMRIVVKTL---MGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp -CEEEEECG---GGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eEEEEEEeC---CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 345555542 2345999999999999999999999999999999986
No 22
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=65.84 E-value=15 Score=29.50 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=43.7
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|.++.. ...|++.++...|-.+|-++|++..|++|+..||.-. |..+ .++.+|.++
T Consensus 26 m~I~Vk~~----g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-------Gk~L--~D~~tL~~~ 83 (101)
T 2klc_A 26 MKVTVKTP----KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA-------GKIL--KDQDTLSQH 83 (101)
T ss_dssp EEEEEECS----SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET-------TEEE--CTTCCTGGG
T ss_pred EEEEEEeC----CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC-------CEEC--CCcCcHHHc
Confidence 55555543 2459999999999999999999999999999999642 2223 345677765
No 23
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=65.79 E-value=49 Score=28.75 Aligned_cols=98 Identities=14% Similarity=0.262 Sum_probs=61.5
Q ss_pred cCCceeeHHHHHHhhcccccCccccCCCCCCCCceEEEEEecceeeeecCccccccccccCCCcceeEEEeecCccccCC
Q psy17539 162 KRPFKVRTQFLDEAKKDAAIQPELLGPDNGGSGLLRLLEISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEVSL 241 (443)
Q Consensus 162 K~~~tV~~dll~~~~kk~~~~~~~l~~~~~~~~~lrl~ei~~~ki~~~l~~~~~i~~~~~~~~~~~~~~~E~ip~de~~~ 241 (443)
... || .++-..+..+..++. ...||+ .+|+ .+.++..+.+.. -.+...++.+...
T Consensus 39 ~~~-tV-~~lK~~I~~~~gip~----------~~QrL~--~~g~---~L~d~~tL~~~~-i~~~~~l~l~~~~------- 93 (172)
T 3u30_A 39 PSD-TI-ENVKAKIQDKEGIPP----------DQQRLI--FAGK---QLEDGRTLSDYN-IQKESTLHLVLRL------- 93 (172)
T ss_dssp TTC-BH-HHHHHHHHHHHCCCG----------GGEEEE--ETTE---ECCTTCBTGGGT-CCTTCEEEEEECC-------
T ss_pred CCC-cH-HHHHHHHHHHHCcCh----------HHEEEE--ECCc---cccccCCHhHcC-Ccccceeeeeecc-------
Confidence 355 88 889888888776543 345655 3554 356666776551 1222334323221
Q ss_pred CCCCeEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCccc
Q psy17539 242 DPDELLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKE 292 (443)
Q Consensus 242 ~~~e~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~~ 292 (443)
.+...|.|-. ..|-.|.+.+.+..|+.++++.++.+.|++.+.
T Consensus 94 -~gg~~i~Vk~-------~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~ 136 (172)
T 3u30_A 94 -RGGMQIFVKT-------LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 136 (172)
T ss_dssp -CCCEEEEEEE-------SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred -cccccceeec-------ccCcceeEEecCCCCHHHHHHHHHHHhCCCcee
Confidence 2344444421 235567889999999999999999999997643
No 24
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=64.77 E-value=10 Score=35.42 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=33.8
Q ss_pred CeEEEEcccCCHHHHHHHHHHHcCCCCc-cEEEEeecc
Q psy17539 23 GFTLELSLKMTYEQLVALVAQHLNTDKK-LIQMFKVQA 59 (443)
Q Consensus 23 ~F~l~Ls~~~tY~~la~~Va~~l~~dp~-~lrf~~~~~ 59 (443)
.++..+|+..|..+|-++|.+.++++++ .+|+|..+.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~ 190 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYM 190 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecC
Confidence 3778899999999999999999999997 799999864
No 25
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.71 E-value=15 Score=31.01 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=42.2
Q ss_pred CCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 20 NDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 20 ~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
....|++.++...|-.+|=+++|+.++++++.+||.-. |..+ +++.||.++
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~-------GKiL--KD~eTL~~~ 75 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS-------GKIL--KNNETLVQH 75 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET-------TEEE--CSSCCHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC-------CeEc--CCcchHHHc
Confidence 34569999999999999999999999999999997642 3444 357799887
No 26
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=63.67 E-value=16 Score=29.12 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=39.4
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
+.-|-+.|+...+|+||..+|+.||.++...+..+.-. ..|. ...+...|...|.
T Consensus 21 DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde----~~g~--~i~sD~dl~~aiq 75 (85)
T 1ip9_A 21 DDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFD----GSGE--EIKTDSQVSNIIQ 75 (85)
T ss_dssp TCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSS----SCCS--CCCSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEecCC----CCCC--cccCHHHHHHHHH
Confidence 35699999999999999999999999976666555421 1233 3334556666665
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=63.31 E-value=19 Score=27.86 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=45.2
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL 80 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l 80 (443)
+.|.++... ...|++.++...|-.+|-++|++..|++|+..||+-. + ..+ .++.+|+++=
T Consensus 5 m~I~Vk~~~---g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~----G---k~L--~D~~tL~~~~ 64 (88)
T 2hj8_A 5 LSILVRNNK---GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE----G---KPL--EDQLPLGEYG 64 (88)
T ss_dssp EEEEEEETT---SCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS----S---SCC--CTTSBHHHHH
T ss_pred EEEEEECCC---CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC----C---EEC--CCCCcHHHcC
Confidence 445555432 3568999999999999999999999999999999742 2 222 3567888873
No 28
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.05 E-value=13 Score=29.24 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=44.1
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|.++.. ...|++.++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|.++
T Consensus 18 m~i~Vk~~----g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-------Gk~L--~D~~tL~~~ 75 (96)
T 1wx8_A 18 IRVSVKTP----QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT-------GKIL--RDQDILSQR 75 (96)
T ss_dssp EEEEEECS----SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET-------TEEC--CTTSCHHHH
T ss_pred EEEEEEEC----CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC-------CEEC--CCcCCHHHC
Confidence 45555443 3468999999999999999999999999999998742 2222 356788876
No 29
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=63.04 E-value=7.6 Score=30.22 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=38.6
Q ss_pred eEEE-EcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCC-CCCcHHHh
Q psy17539 24 FTLE-LSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHN-FEGTLKDI 79 (443)
Q Consensus 24 F~l~-Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~-~~~~L~d~ 79 (443)
..+. |+...|-.+|.++|++..|++|+..||+... |+.++..+ +..+|+++
T Consensus 12 ~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~-----p~k~l~l~~~~~tL~~~ 64 (86)
T 2kzr_A 12 HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGY-----PPECLDLSDRDITLGDL 64 (86)
T ss_dssp EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESS-----CCCCCCCCCSSCBTTTS
T ss_pred EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCC-----CCcccccCCCCCCHHHc
Confidence 4566 8899999999999999999999999986532 44444432 45677776
No 30
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=62.34 E-value=11 Score=29.73 Aligned_cols=60 Identities=22% Similarity=0.145 Sum_probs=44.6
Q ss_pred cceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539 7 NRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL 80 (443)
Q Consensus 7 nRv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l 80 (443)
..+.|..+. ...+++.++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|+++=
T Consensus 18 ~~m~I~Vk~-----g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-------Gk~L--~D~~tL~~y~ 77 (93)
T 2l7r_A 18 GSMQLFVRA-----QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA-------GAPL--EDEATLGQCG 77 (93)
T ss_dssp --CEEEEES-----SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET-------TEEC--CTTSBHHHHT
T ss_pred CcEEEEEEC-----CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC-------CEEC--CCCCcHHHCC
Confidence 344555443 2568999999999999999999999999999999742 2222 4567888873
No 31
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=61.97 E-value=8 Score=29.14 Aligned_cols=44 Identities=14% Similarity=0.338 Sum_probs=33.8
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.+.|.|.+.++++++|++++++.|++-. +.+| +-.++ -|+|+
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~---~qrL--~~~G~--~L~d~ 56 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMN---SLRF--LFEGQ--RIADN 56 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGG---GEEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcc---cEEE--EECCE--EeCCC
Confidence 567889999999999999999999999864 4444 33443 36665
No 32
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.68 E-value=12 Score=30.61 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=40.3
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...|++.+....|=.+|-++|+++.|++|+..||.- + |..+ .+..||.++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~-~------GKiL--~D~~TL~~y 78 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI-N------KKQL--QLGKTLEEQ 78 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE-T------TEEC--CTTSBHHHH
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe-C------CeEC--CCCCcHHHc
Confidence 467999999999999999999999999999999962 1 2222 456778776
No 33
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=61.33 E-value=11 Score=29.27 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=45.5
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL 80 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l 80 (443)
+.|.++... ...|++.++...|-.+|-++|++..|++|+..||+-. | .. -..++.+|+++=
T Consensus 11 ~~i~vk~l~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~----G---k~-lL~D~~tL~~y~ 71 (84)
T 2kk8_A 11 MKFLVENLN---GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD----G---IV-ILREDLTVEQCQ 71 (84)
T ss_dssp EEEEEEETT---SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET----T---EE-CCCSSSBHHHHT
T ss_pred eEEEEEecC---CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC----C---EE-ecCCcCCHHHcC
Confidence 445444432 3569999999999999999999999999999999853 2 22 024567888873
No 34
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=60.88 E-value=22 Score=26.54 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=45.5
Q ss_pred cceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 7 NRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 7 nRv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.++.|.++.. +...|++.++...|=.+|-++|++..|++|+..||.-. | .. ..++.+|+++
T Consensus 3 ~~m~i~Vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~----G---~~--L~d~~tL~~~ 63 (79)
T 3phx_B 3 EPLSILVRNN---KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE----G---KP--LEDQLPLGEY 63 (79)
T ss_dssp CCEEEEEECT---TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET----T---EE--CCTTSBGGGG
T ss_pred CCEEEEEEeC---CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC----C---EE--CCCCCcHHHC
Confidence 3455555542 34569999999999999999999999999999998752 2 22 2456778776
No 35
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=59.57 E-value=20 Score=26.84 Aligned_cols=59 Identities=8% Similarity=0.189 Sum_probs=44.3
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|.++.. +...+.+.++...|-.+|-++|+++.|++|+..||.-. |.++ .++.||+++
T Consensus 4 m~i~vk~~---~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~-------G~~L--~d~~tl~~~ 62 (79)
T 2uyz_B 4 IKLKVIGQ---DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE-------GQRI--ADNHTPKEL 62 (79)
T ss_dssp EEEEEECT---TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET-------TEEC--CTTCCHHHH
T ss_pred EEEEEECC---CCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC-------CEEe--CCCCCHHHc
Confidence 44554432 23568999999999999999999999999999998652 2333 356788876
No 36
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=59.17 E-value=13 Score=30.25 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=32.8
Q ss_pred eEEeeeeeccccccccCCceEEEecCCchHHHHHHHHHHHhCCCcc
Q psy17539 246 LLIPVAHFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEK 291 (443)
Q Consensus 246 ~lv~v~hf~ke~~~~~gipf~f~l~~~e~~~d~~~rL~~k~~l~~~ 291 (443)
++|+|++..+ +..+.+.+.+.+|+..+++++++++|++..
T Consensus 13 kvvHVf~~~~------a~~h~v~I~~~etv~~~ke~V~eqTgIp~~ 52 (94)
T 4efo_A 13 MVIHVFSLQQ------MTAHKIYIHSYNTATIFHELVYKQTKIISS 52 (94)
T ss_dssp EEEEEEETTT------TEEEEEEEETTCBHHHHHHHHHHHHCCCGG
T ss_pred eeEEEEEccc------ceEEEEEeccchHHHHHHHHHHHHhCCCHH
Confidence 5667766554 455778999999999999999999999875
No 37
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.04 E-value=29 Score=26.52 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=45.7
Q ss_pred ceEEEEEeCCCCCCCCeEEE-EcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLE-LSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~-Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.+.|.++... ....|+++ ++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|.++
T Consensus 7 ~m~i~Vk~~~--g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~-------gk~L--~d~~tL~~~ 68 (89)
T 1wy8_A 7 GMWIQVRTID--GSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR-------GKQL--ENGYTLFDY 68 (89)
T ss_dssp CEEEEEEETT--CSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET-------TEEC--CSSSBHHHH
T ss_pred cEEEEEEECC--CCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC-------CeEC--CCCCCHHHC
Confidence 4566666542 11469995 999999999999999999999999999752 2222 356788887
No 38
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=58.94 E-value=11 Score=28.57 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++.... + |+-.++ -|+|+
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q---r--L~~~g~--~L~d~ 56 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---R--LIFAGK--QLEDG 56 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---E--EEETTE--ECCTT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHE---E--EEECCE--ECCCC
Confidence 56788899999999999999999999986543 3 333343 46665
No 39
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=58.89 E-value=34 Score=27.48 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=40.8
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCc-c-CCCCCcHHHh
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPL-P-HNFEGTLKDI 79 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i-~-~~~~~~L~d~ 79 (443)
..+++.++..+|-.+|-++|.++.|++|+.-||.-... .+..+ . ..+..+|.++
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~----~g~~~~~L~~D~~tL~~Y 82 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDD----SGSKVAVLSDDSRPLGFF 82 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECS----SSCBCCCSSGGGSCHHHH
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecC----CCcccceecCCcCCHHHC
Confidence 46999999999999999999999999999999876421 12211 1 2455677776
No 40
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=58.30 E-value=11 Score=27.79 Aligned_cols=44 Identities=18% Similarity=0.383 Sum_probs=33.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+.+++|++|++++|++.. ..++ +-.++ -|+|+
T Consensus 10 g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~---~q~L--~~~g~--~L~d~ 53 (76)
T 3a9j_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFAGK--QLEDG 53 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGG---GEEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHH---HeEE--EECCe--ECCCC
Confidence 567888999999999999999999999853 4444 22343 46665
No 41
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.06 E-value=24 Score=29.58 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=44.3
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.+.|.++.. ...|++.++...|-.+|-++|++..|++++..||+-. |..+ .++.+|.++
T Consensus 32 ~m~I~Vk~~----g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-------Gk~L--~D~~tL~dy 90 (125)
T 1j8c_A 32 IIKVTVKTP----KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA-------GKIL--KDQDTLIQH 90 (125)
T ss_dssp CEEEEEECS----SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET-------TEEE--STTSCGGGT
T ss_pred cEEEEEEeC----CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC-------CEEc--CCCCCHHHc
Confidence 355655553 3459999999999999999999999999999999742 2223 345677765
No 42
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=57.68 E-value=11 Score=28.32 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=33.9
Q ss_pred CCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 344 FGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 344 hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
.|-.|.+.+.+..+.+++|++|++++|++..+. + |+-.++ -|+|+
T Consensus 13 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---r--L~~~G~--~L~d~ 57 (79)
T 3phx_B 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF---W--LTFEGK--PLEDQ 57 (79)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGE---E--EEETTE--ECCTT
T ss_pred CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHE---E--EEECCE--ECCCC
Confidence 366788899999999999999999999986542 3 233443 46665
No 43
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=57.56 E-value=11 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=26.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQE 373 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ 373 (443)
|-.|.+.+.+.++..++|++|++++|++.
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 48 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPV 48 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcCh
Confidence 67788999999999999999999999974
No 44
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=57.49 E-value=11 Score=29.39 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=39.8
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...|++.++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|+++
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-------Gk~L--~D~~tL~~~ 68 (88)
T 1sif_A 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA-------GKQL--EDGRTLSDY 68 (88)
T ss_dssp SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET-------TEEC--CTTSBSGGG
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC-------CEEC--CCCCcHHHc
Confidence 3569999999999999999999999999999999752 2222 345677766
No 45
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=56.98 E-value=13 Score=28.90 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=32.9
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
...|++.++...|-.+|-++|++..|++|+..||.-
T Consensus 21 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 355899999999999999999999999999999973
No 46
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=56.86 E-value=26 Score=28.01 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=46.8
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCc-c-CCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPL-P-HNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i-~-~~~~~~L~d~ 79 (443)
.|.|.++... .....+++.++..+|-.+|-++|.+..|++|+.-||+-.. ++..+ . ..+..+|.++
T Consensus 15 ~v~l~It~s~-~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-----~g~~~~~L~~D~~tL~~Y 82 (95)
T 2kjr_A 15 FIKVNVSNSH-NDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-----GDTCVSTMDNNDAQLGYY 82 (95)
T ss_dssp EEEEEEEESS-CSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-----TTEEEEECCCTTSBHHHH
T ss_pred eEEEEEEECC-CCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-----CCcccceeCCCCCCHhHC
Confidence 4555555421 1123589999999999999999999999999999997653 12222 1 2566788876
No 47
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=56.62 E-value=27 Score=26.88 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=43.6
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|.++.. +...|++.++...|=.+|-++|++..|++|+..||.-. |..+ .++.+|.++
T Consensus 6 m~i~Vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~-------Gk~L--~d~~tL~~~ 64 (90)
T 4dwf_A 6 LEVLVKTL---DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ-------GRVL--QDDKKLQEY 64 (90)
T ss_dssp EEEEEEET---TCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET-------TEEC--CTTSBGGGG
T ss_pred EEEEEEcC---CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC-------CeEC--CCCCCHHHc
Confidence 44554443 24569999999999999999999999999999998752 1222 345677765
No 48
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=56.56 E-value=22 Score=27.67 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=39.9
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...|++.++..+|=.+|-++|++..|++|+..||+-. |..+ .++.+|.++
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~-------G~~L--~d~~tL~~~ 60 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-------GKQL--EDGRTLSDY 60 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-------TEEC--CTTSBTGGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC-------CEEC--CCCCcHHHc
Confidence 3569999999999999999999999999999999842 1222 355677765
No 49
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=56.39 E-value=23 Score=27.43 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=44.5
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.+.|.++.. +...|++.++...|=.+|-++|++..|++|+..||+-. | .. ..++.+|.++
T Consensus 17 ~m~i~Vk~~---~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~----G---k~--L~D~~tL~~~ 76 (91)
T 3v6c_B 17 SMQIFVNTL---TGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA----G---KQ--LEDGRTLSDY 76 (91)
T ss_dssp SEEEEEECT---TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET----T---EE--CCTTCBTGGG
T ss_pred eEEEEEEeC---CCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC----C---eE--CCCcCcHHHC
Confidence 345555443 23569999999999999999999999999999999752 2 22 2356677775
No 50
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=56.24 E-value=25 Score=28.57 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=33.4
Q ss_pred CCCCeEEEEcc-cCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 20 NDQGFTLELSL-KMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 20 ~~~~F~l~Ls~-~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
....|++.++. .+|-.+|-++|++..|++|+..||+-
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~ 76 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG 76 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 34569999997 99999999999999999999999875
No 51
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=55.71 E-value=24 Score=28.25 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=44.9
Q ss_pred cceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 7 NRVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 7 nRv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
..+.|.++... . .|++.++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|+++
T Consensus 21 ~~m~I~Vk~~~---g-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-------Gk~L--~D~~tL~~y 80 (100)
T 1yqb_A 21 HLIKVTVKTPK---D-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA-------GKIL--KDPDSLAQC 80 (100)
T ss_dssp TEEEEEEECSS---C-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET-------TEEC--CTTSBHHHH
T ss_pred CeEEEEEEcCC---C-cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC-------CEEC--CCcCcHHHC
Confidence 34566655532 1 28999999999999999999999999999999742 2222 356788877
No 52
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.69 E-value=26 Score=28.63 Aligned_cols=59 Identities=20% Similarity=0.136 Sum_probs=46.2
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|.++... ...+++.+....|=.+|=++|++.-|++|+.+||.-. |.++ .+..+|.|+
T Consensus 29 m~I~VKtl~---Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~-------Gk~L--~D~~TL~dy 87 (100)
T 1uh6_A 29 IEVVCNDRL---GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW-------YTIF--KDHVSLGDY 87 (100)
T ss_dssp EEEEEECSS---SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET-------TEEC--CSSCBHHHH
T ss_pred EEEEEECCC---CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC-------CEEC--CCCCCHHHc
Confidence 556665543 3569999999999999999999999999999999843 2333 457788886
No 53
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=55.62 E-value=15 Score=27.35 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=36.3
Q ss_pred eEEEEEeCCCCCCCC-eEEE-EcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 9 VEVTFCDKTILNDQG-FTLE-LSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 9 v~V~F~~~~~~~~~~-F~l~-Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
+.|.++... ... +++. ++...|-.+|-++|++..|++|+..||+-
T Consensus 3 m~i~Vk~~~---g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 3 MWIQVRTMD---GRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp EEEEEEETT---SSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEECC---CCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 445555432 344 4899 99999999999999999999999999975
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=55.55 E-value=27 Score=28.38 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=38.1
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
.+.|.++.. +...|.+.++...|-.+|-++|++..|++|+..||+-
T Consensus 35 ~m~I~Vk~~---~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 35 AMQIFVKTL---TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp CEEEEEECS---SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred eEEEEEEcC---CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 466665543 2356899999999999999999999999999999975
No 55
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=55.50 E-value=12 Score=29.07 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=33.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++-.. .|+ +-.++ -|+|+
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~---qrL--~~~Gk--~L~D~ 70 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRL--IFAGK--QLEDG 70 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGG---CEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhh---EEE--EECCe--ECCCc
Confidence 5678899999999999999999999998654 233 33444 36765
No 56
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.41 E-value=14 Score=29.27 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=32.2
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEE
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMF 55 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~ 55 (443)
..|++.++...|-.+|-++|++..|++|+..||+
T Consensus 27 ~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 27 TKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 4689999999999999999999999999999997
No 57
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=55.40 E-value=11 Score=28.58 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=33.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++.... + |+-.++ -|+|+
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~q---r--L~~~g~--~L~d~ 56 (85)
T 3n3k_B 13 GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQ---R--LIFAGK--QLEDG 56 (85)
T ss_dssp GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---E--EEETBE--ECCTT
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHE---E--EEECCe--ECCCC
Confidence 56688899999999999999999999987653 3 333343 46665
No 58
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.01 E-value=27 Score=27.14 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=35.7
Q ss_pred eEEEEEeCCCCCCCCeEEEEccc-----CCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLK-----MTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~-----~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
+.|.++.. ...|++.++.. +|-.+|-++|++..|++|+..||+-
T Consensus 8 ~~v~Vk~~----~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~ 56 (92)
T 1wxv_A 8 LTVTVTHS----NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF 56 (92)
T ss_dssp EEEEEECS----SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEEEEEC----CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 45555442 24588999985 9999999999999999999999974
No 59
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=54.94 E-value=27 Score=28.05 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=26.1
Q ss_pred CceEEEecCCchHHHHHHHHHHHhCCCcc
Q psy17539 263 YPFLLRIKDNERFSKVKERLAKKLNIQEK 291 (443)
Q Consensus 263 ipf~f~l~~~e~~~d~~~rL~~k~~l~~~ 291 (443)
..+.+.+.++.|+.++|+.|+.++|++..
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~ 55 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVN 55 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTT
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHH
Confidence 45778899999999999999999999874
No 60
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=54.73 E-value=13 Score=27.25 Aligned_cols=44 Identities=18% Similarity=0.452 Sum_probs=33.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.+.+.+.+..+.+++|++|++++|++.. ..++ +-.++ -|+|+
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~---~q~L--~~~g~--~L~d~ 53 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQ---QQRL--IYSGK--QMNDE 53 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGG---GEEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChH---HEEE--EECCE--ECCCC
Confidence 567788999999999999999999999853 4443 32343 46665
No 61
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=54.71 E-value=20 Score=29.28 Aligned_cols=40 Identities=10% Similarity=0.289 Sum_probs=30.0
Q ss_pred ceEEEEEeCCC--CCCCCeEEEEcccCCHHHHHHHHHHHcCC
Q psy17539 8 RVEVTFCDKTI--LNDQGFTLELSLKMTYEQLVALVAQHLNT 47 (443)
Q Consensus 8 Rv~V~F~~~~~--~~~~~F~l~Ls~~~tY~~la~~Va~~l~~ 47 (443)
||.|+|....+ +.+..|.+.++..++|++|..+|.++|+.
T Consensus 7 kVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~ 48 (98)
T 1q1o_A 7 LFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISN 48 (98)
T ss_dssp EEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcC
Confidence 56676643211 11345999999999999999999999985
No 62
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.59 E-value=29 Score=27.82 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=43.0
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|.++... . .|++.++...|-.+|-++|++..|++++..||+-. |..+ .++.+|.++
T Consensus 18 m~I~Vk~~~---g-~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-------Gk~L--~D~~tL~~~ 75 (106)
T 1wx7_A 18 IKVTVKTPK---D-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA-------GKIL--KDPDSLAQC 75 (106)
T ss_dssp EEEEEECSS---C-EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET-------TEEC--CTTSCHHHH
T ss_pred EEEEEEeCC---C-cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC-------CEEC--CCcCcHHHc
Confidence 455555432 2 28999999999999999999999999999999642 2222 356677776
No 63
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=54.44 E-value=22 Score=27.00 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=40.3
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...|++.++...|=.+|-++|++..|++|+..||+-. + .. ..++.+|.++
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~----G---~~--L~d~~tL~~~ 71 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS----G---KQ--MNDEKTAADY 71 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET----T---EE--CCTTSBGGGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC----C---eE--CCCCCcHHHc
Confidence 3569999999999999999999999999999998752 2 12 2356777776
No 64
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=54.30 E-value=14 Score=28.25 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=27.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|-.|.+.+.+..+..++|++|++++|++...
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 52 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 52 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHH
Confidence 6678899999999999999999999998544
No 65
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=54.09 E-value=67 Score=25.65 Aligned_cols=68 Identities=7% Similarity=0.050 Sum_probs=45.7
Q ss_pred cceEEEEEeCCC-CCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhcC
Q psy17539 7 NRVEVTFCDKTI-LNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDILA 81 (443)
Q Consensus 7 nRv~V~F~~~~~-~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l~ 81 (443)
.+|.|.|++... |.=+.=..-++..+|..++..-+-++|+++|+.=-|.-+|+ +-.| +...++.++-.
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn-~~~P------~~d~~~~~Ly~ 72 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQ-SFAP------SPDQEVGTLYE 72 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETT-TBCC------CTTCBHHHHHH
T ss_pred ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECC-ccCC------ChhhHHHHHHH
Confidence 479999999633 32223345689999999999999999999987544444443 1223 23566776654
No 66
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=53.84 E-value=29 Score=27.47 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=40.6
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...|.+.++...|-.+|-++|+++.|++|+..||+-. |..+ .+..||.++
T Consensus 31 g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~-------Gk~L--~d~~tl~dy 80 (97)
T 1wyw_B 31 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE-------GQRI--ADNHTPKEL 80 (97)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET-------TEEC--CTTCCHHHH
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC-------CeEc--CCCCCHHHC
Confidence 3569999999999999999999999999999998753 2222 356788876
No 67
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=53.48 E-value=17 Score=28.76 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=39.2
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
..|++.++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|+++
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~-------Gk~L--~D~~tL~~~ 59 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-------GKQL--EDGRTLSDY 59 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET-------TEEC--CTTSBTGGG
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC-------CEEC--CCCCCHHHc
Confidence 458999999999999999999999999999998742 2222 345677766
No 68
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.76 E-value=14 Score=27.59 Aligned_cols=44 Identities=18% Similarity=0.402 Sum_probs=33.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+.+++|++|++++|++.. ..|+ +-.++ -|+|+
T Consensus 17 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~---~qrL--~~~gk--~L~d~ 60 (81)
T 2dzi_A 17 GRECSLQVPEDELVSTLKQLVSEKLNVPVR---QQRL--LFKGK--ALADG 60 (81)
T ss_dssp SCEEEEEECSSCBHHHHHHHHHHHTCCCTT---TCEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHH---HEEE--EECCe--ECCCC
Confidence 567888999999999999999999999853 4444 22343 46665
No 69
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=52.71 E-value=32 Score=26.24 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=44.3
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.+.|.++.. +...|++.++...|=.+|-++|++..|++|+..||.-. | .. ..++.+|.++
T Consensus 17 ~m~i~Vk~~---~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~----G---k~--L~D~~tL~~~ 76 (88)
T 4eew_A 17 SLEVLVKTL---DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ----G---RV--LQDDKKLQEY 76 (88)
T ss_dssp EEEEEEEET---TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET----T---EE--CCTTSBGGGG
T ss_pred eEEEEEEcC---CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC----C---EE--CCCCCcHHHc
Confidence 345555543 24558999999999999999999999999999999752 2 22 2346677765
No 70
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=51.68 E-value=40 Score=25.36 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=44.2
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHH---cCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQH---LNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~---l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.+.|.++.. +...|++.++...|-.+|-++|++. .|++|+..||.-. |..+ .++.+|+++
T Consensus 5 ~m~i~vk~~---~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~-------Gk~L--~D~~tL~~~ 67 (85)
T 2wyq_A 5 AVTITLKTL---QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA-------GKIL--SDDVPIRDY 67 (85)
T ss_dssp CEEEEEEET---TSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET-------TEEC--CTTSBGGGG
T ss_pred eEEEEEEEC---CCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC-------CEEC--cCCCCHHHc
Confidence 455666553 2356999999999999999999998 6899999999742 2222 355677776
No 71
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=51.56 E-value=19 Score=28.50 Aligned_cols=59 Identities=24% Similarity=0.234 Sum_probs=44.1
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCC-CcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFE-GTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~-~~L~d~ 79 (443)
.+.|.++-. .. .|++.++..+|-.+|-++|++..|++|+..||+-. |..+ .++ .+|.++
T Consensus 15 ~~~I~Vk~~---~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-------Gk~L--~D~~~tL~~y 74 (94)
T 2kan_A 15 KIHVTVKFP---SK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS-------GIEL--ADDYRNLNEY 74 (94)
T ss_dssp CEEEEEECS---SC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET-------TEEE--CCTTSBHHHH
T ss_pred CEEEEEEcC---Cc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC-------CEEC--CCCcccHHHC
Confidence 345554442 22 69999999999999999999999999999999742 2222 345 688876
No 72
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=51.06 E-value=70 Score=25.73 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=41.7
Q ss_pred CCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539 20 NDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL 80 (443)
Q Consensus 20 ~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l 80 (443)
....+.+.+....|=.+|=++||++.|++|+..||.-. + .. ..+..||.|+=
T Consensus 30 ~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~----G---k~--LkD~~TL~dY~ 81 (93)
T 3plu_A 30 LGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG----G---SV--LKDHISLEDYE 81 (93)
T ss_dssp TSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET----T---EE--CCTTSBTGGGT
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC----C---EE--ccCcCCHHHcC
Confidence 45669999999999999999999999999999999652 1 11 34567888763
No 73
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=50.15 E-value=17 Score=28.29 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=27.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|-.|.+.+.+.++..++|++|++++|++-..
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 40 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 40 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhH
Confidence 5667889999999999999999999998654
No 74
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=49.86 E-value=16 Score=29.06 Aligned_cols=44 Identities=14% Similarity=0.338 Sum_probs=33.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.|.|.+..++.++|++|+++.|++.. ..+| +-.++ -|+|+
T Consensus 31 g~~~~l~v~~~~tv~~lK~~i~~~~gip~~---~qrL--if~Gk--~L~d~ 74 (97)
T 1wyw_B 31 SSEIHFKVKMTTHLKKLKESYCQRQGVPMN---SLRF--LFEGQ--RIADN 74 (97)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGG---GEEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChh---hEEE--EECCe--EcCCC
Confidence 567889999999999999999999999864 3443 33443 36665
No 75
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=49.84 E-value=15 Score=28.50 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=26.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|-.|.+.+.+..+..++|++|++++|++..
T Consensus 14 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 43 (88)
T 2hj8_A 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 43 (88)
T ss_dssp SCEEEEEEESSSBHHHHHHHHHHHTCSCTT
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChh
Confidence 567788999999999999999999999854
No 76
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=49.17 E-value=30 Score=27.36 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=43.8
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|.++.. +...|.+.++...|=.+|-++|++..|++|+..||.-. |..+ .++.+|+++
T Consensus 23 m~I~Vk~~---~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-------Gk~L--~D~~tL~~~ 81 (98)
T 4hcn_B 23 MQIFVKTL---TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA-------GKQL--EDGRTLSDY 81 (98)
T ss_dssp CEEEEEET---TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET-------TEEC--CTTCBSGGG
T ss_pred EEEEEEeC---CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC-------CEEC--CCCCcHHHC
Confidence 44555543 23559999999999999999999999999999998842 2222 356677765
No 77
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.01 E-value=25 Score=27.99 Aligned_cols=43 Identities=14% Similarity=0.019 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCCCCCe-EEEEcccCCHHHHHHHHHHHcCCCCccEEEE
Q psy17539 9 VEVTFCDKTILNDQGF-TLELSLKMTYEQLVALVAQHLNTDKKLIQMF 55 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F-~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~ 55 (443)
+.|+++.. ...| ++.++...|-.+|-++|++..|++|++.||.
T Consensus 8 m~i~Vk~~----g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi 51 (96)
T 1wgg_A 8 YSVTVKWG----KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM 51 (96)
T ss_dssp EEEEEEET----TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE
T ss_pred EEEEEEEC----CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 44555532 3558 6999999999999999999999999999998
No 78
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=48.48 E-value=18 Score=27.77 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++... .|+ +-.++ -|+|+
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---qrL--i~~Gk--~L~D~ 70 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEK---QRL--IYQGR--VLQDD 70 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGG---EEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHH---EEE--EECCE--ECCCC
Confidence 5667889999999999999999999998654 233 32343 46775
No 79
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=48.34 E-value=18 Score=27.84 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=35.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCCCCcccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEEDSDCPVS 401 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd~d~~~~ 401 (443)
|--|.+.|.+..+..++|++|++++|++-.. .|+ +-.++ -|+|+ ..+.+
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---qrL--i~~Gk--~L~d~-~tL~~ 63 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEK---QRL--IYQGR--VLQDD-KKLQE 63 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGG---EEE--EETTE--ECCTT-SBGGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHH---EEE--EECCe--ECCCC-CCHHH
Confidence 5668889999999999999999999997654 333 33343 46765 44333
No 80
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=48.16 E-value=18 Score=26.75 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=32.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++.. ..++ +-.++ -|+|+
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~---~qrL--~~~gk--~L~d~ 56 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVA---NQRL--IYSGK--ILKDD 56 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGG---GEEE--EETTE--ECCTT
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHH---HEEE--EECCe--EcCCC
Confidence 456788999999999999999999999853 3443 33343 46665
No 81
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=47.96 E-value=11 Score=30.43 Aligned_cols=36 Identities=6% Similarity=0.035 Sum_probs=32.8
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
...|++.++...|=.+|-++|++..|++|+..||+-
T Consensus 37 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 72 (101)
T 3m63_B 37 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 72 (101)
T ss_dssp SCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 456889999999999999999999999999999875
No 82
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.92 E-value=18 Score=28.58 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=26.1
Q ss_pred CceEEEecCCchHHHHHHHHHHHhCCCcc
Q psy17539 263 YPFLLRIKDNERFSKVKERLAKKLNIQEK 291 (443)
Q Consensus 263 ipf~f~l~~~e~~~d~~~rL~~k~~l~~~ 291 (443)
.++.+.+.++.|+.++|+.|+.+.|++..
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~ 47 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPAS 47 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTT
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHH
Confidence 46888999999999999999999999864
No 83
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=47.92 E-value=25 Score=28.38 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=34.6
Q ss_pred ceEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCccc
Q psy17539 264 PFLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSA 314 (443)
Q Consensus 264 pf~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~ 314 (443)
-+.+.+.++.|+.++|+.++++.|++.+ ++|+ ++.|++.++..++
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~---qQrL---if~Gk~LkD~~TL 77 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGTQPN---KIVL---QKGGSVLKDHISL 77 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTCCGG---GEEE---EETTEECCTTSBT
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCCCHH---HEEE---EeCCEEccCcCCH
Confidence 3556677999999999999999999874 3555 2567887776554
No 84
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.73 E-value=52 Score=26.59 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=43.8
Q ss_pred EEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 11 VTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 11 V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|+.+. ....+++.+....|-.+|-++|.++.|++|++-|+.... ++. ..+..+|+++
T Consensus 10 ~~~~vk~--~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~-----~gk---L~D~~tLs~~ 68 (100)
T 2dzm_A 10 LDFRVEY--RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWK-----TGD---VEDSTVLKSL 68 (100)
T ss_dssp EEEEEEC--SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCS-----SSC---CCTTSBHHHH
T ss_pred EEEEEEe--CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccC-----CCC---CCCcCCHHHc
Confidence 4555443 245689999999999999999999999999998884321 122 2466788887
No 85
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.48 E-value=50 Score=25.63 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=45.5
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHc--CCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHL--NTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL 80 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l--~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l 80 (443)
.+.|.++..... ...|++.+....|-.+|-++|++.. +++|+..||+-. |..+ .++.+|.+++
T Consensus 7 ~m~i~Vk~~~~~-~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~-------Gk~L--~D~~tL~~~~ 71 (93)
T 1wgd_A 7 GVTLLVKSPNQR-HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS-------GKLL--LDHQCLRDLL 71 (93)
T ss_dssp CCEEEEECSSSS-CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET-------TEEC--CSSSCHHHHS
T ss_pred EEEEEEEeCCCC-eEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC-------CEEC--cCcCCHHHHh
Confidence 356666654221 1257777779999999999999999 999999999842 2222 3567888885
No 86
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=46.96 E-value=46 Score=25.44 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=38.6
Q ss_pred CeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 23 GFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 23 ~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.+.+.+.+..+-..|.++.+++.|++|..+||.-- |.++ +.+.|+.++
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd-------G~~l--~~~~Tp~~l 67 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD-------GTKL--SGKELPADL 67 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET-------TEEC--CSCCCHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC-------CEEc--CCCCCHHHc
Confidence 58889999999999999999999999999998863 2333 335677665
No 87
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=46.88 E-value=19 Score=28.48 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=33.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.|.+..+..++|++|++++|++-... |+ +-.++ -|+|+
T Consensus 32 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---rL--i~~Gk--~L~D~ 75 (98)
T 4hcn_B 32 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---RL--IFAGK--QLEDG 75 (98)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC---EE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHE---EE--EECCE--ECCCC
Confidence 55688899999999999999999999987543 33 33443 36665
No 88
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=46.08 E-value=21 Score=27.86 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=33.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++-.. .|+ +-.++ -|+|+
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~---qrL--~~~G~--~L~d~ 54 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRL--IFAGK--QLEDG 54 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGG---EEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhH---EEE--EECCE--ECCCC
Confidence 5678899999999999999999999998644 333 33443 36665
No 89
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=45.81 E-value=21 Score=27.69 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+.+++|++|++++|++.. ..|+ +-.++ -|+|+
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~---~qrL--~~~Gk--~L~D~ 62 (88)
T 1sif_A 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPD---QQRL--IFAGK--QLEDG 62 (88)
T ss_dssp SCEEEEECCTTSBHHHHHHHHHHHHCCCGG---GCEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChh---hEEE--EECCE--ECCCC
Confidence 566888899999999999999999999853 3443 22343 46665
No 90
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=45.78 E-value=12 Score=29.27 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=27.7
Q ss_pred CCceEE-EecCCCchHHHHHHHHHHhCCCcccccceeE
Q psy17539 345 GYPFLL-RIKDNERFSKVKERLAKKLNIQEKEFEKYKF 381 (443)
Q Consensus 345 GiPF~f-~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kf 381 (443)
|-+|.+ .|-+.++..++|++|++++||+- ++-|+
T Consensus 16 g~~~~i~~v~~~~TV~~lK~~I~~~~gip~---~~QkL 50 (90)
T 1v5t_A 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGVLP---ERQKL 50 (90)
T ss_dssp TEEEEECSCCSSSBHHHHHHHHHHHTCCCT---TTCEE
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHCcCH---HHeEE
Confidence 456667 88999999999999999999974 44454
No 91
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.41 E-value=18 Score=27.55 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=32.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++-. ..++ +-.++ -|+|+
T Consensus 17 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~---~qrL--~~~Gk--~L~d~ 60 (87)
T 1wh3_A 17 GGSYAYAINPNSFILGLKQQIEDQQGLPKK---QQQL--EFQGQ--VLQDW 60 (87)
T ss_dssp TEEEEEEECSSSBHHHHHHHHHHHTCCCTT---TEEE--EETTE--ECCSS
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCCChH---HEEE--EECCE--EccCC
Confidence 567788999999999999999999999853 3343 33343 36665
No 92
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=45.13 E-value=23 Score=27.48 Aligned_cols=36 Identities=6% Similarity=0.100 Sum_probs=33.0
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
...|++.++...|=.+|-++|++..|++|+..||.-
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 456999999999999999999999999999999875
No 93
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=45.03 E-value=24 Score=29.01 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=33.2
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
...|++.++...|-.+|-++|++..|++|+..||+-
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 356999999999999999999999999999999974
No 94
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=44.99 E-value=49 Score=26.94 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=40.6
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL 80 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l 80 (443)
..|++.++..+|-.+|-++|++..|++|+..||+-. |..+ .++.+|+++=
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~-------Gk~L--~D~~tL~~y~ 95 (115)
T 1we7_A 46 QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE-------GIFI--KDSNSLAYYN 95 (115)
T ss_dssp EEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET-------TEEE--CTTSBHHHHT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC-------CEEC--CCCCCHHHCC
Confidence 359999999999999999999999999999999752 2223 4567888773
No 95
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.37 E-value=24 Score=28.82 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=33.8
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-++.+.+.+.++..++|++|+++.|++ .++.++ +..+++ |+|+
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip---~~qQrL--i~~Gk~--L~D~ 81 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTR---WNKIVL--KKWYTI--FKDH 81 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCC---GGGCEE--EETTEE--CCSS
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCC---HHHEEE--EECCEE--CCCC
Confidence 6778899999999999999999999998 344444 223444 6665
No 96
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=44.09 E-value=33 Score=26.86 Aligned_cols=55 Identities=16% Similarity=0.049 Sum_probs=40.8
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCC-Ccc-CCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGN-PLP-HNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~-~i~-~~~~~~L~d~ 79 (443)
...++..++..+|-.+|=++|..+.|++|+.-||.-... ++. ..+ ..+..+|+++
T Consensus 14 ~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~----~~~~~g~~l~d~~tL~~Y 70 (86)
T 4b6w_A 14 MRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDD----RGITIEKNMANDKQLGYY 70 (86)
T ss_dssp CCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECT----TSCEEESSCCTTSBGGGG
T ss_pred CeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecC----CCCceeeEcCCCCCHHHC
Confidence 345899999999999999999999999999999975432 121 111 2355677665
No 97
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.35 E-value=42 Score=27.03 Aligned_cols=63 Identities=17% Similarity=0.056 Sum_probs=44.5
Q ss_pred eEEEEEeCCCCCCCCeEEEEcc---------cCCHHHHHHHHHHHc--CCCCcc-EEEEeeccCCCCCCCCccCCCCCcH
Q psy17539 9 VEVTFCDKTILNDQGFTLELSL---------KMTYEQLVALVAQHL--NTDKKL-IQMFKVQAYKDTPGNPLPHNFEGTL 76 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~---------~~tY~~la~~Va~~l--~~dp~~-lrf~~~~~~~~~p~~~i~~~~~~~L 76 (443)
+.|.++-...+....|++.+.. ..|-.+|-++|++.. |++|+. .||.-. |..+ .++.+|
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~-------Gk~L--~D~~tL 83 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC-------GRKL--KDDQTL 83 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET-------TEEC--CTTCBH
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC-------CeEC--CCCCcH
Confidence 4555554433223568898665 599999999999999 999999 998632 2223 456788
Q ss_pred HHhc
Q psy17539 77 KDIL 80 (443)
Q Consensus 77 ~d~l 80 (443)
.++=
T Consensus 84 ~~y~ 87 (107)
T 1x1m_A 84 DFYG 87 (107)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 8773
No 98
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=43.31 E-value=24 Score=27.72 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|-.|.+.+.+..+..++|++|++++|++..
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 56 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPE 56 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGG
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChh
Confidence 567888999999999999999999999854
No 99
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.20 E-value=19 Score=28.56 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=25.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQE 373 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ 373 (443)
|-.|.+.+-+.++..++|++|++++||+-
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 34567899999999999999999999984
No 100
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=43.01 E-value=52 Score=28.04 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=41.5
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
...|+++++...|=.+|-++|++..|++|+..||....+ |..+ .+..+|+++
T Consensus 12 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~-----g~~L--~d~~tL~~y 63 (159)
T 3rt3_B 12 GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPS-----GVAL--QDRVPLASQ 63 (159)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETT-----CCBC--CTTSCGGGG
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCC-----CCCC--CCCCCHHHc
Confidence 456999999999999999999999999999999884311 2222 567788876
No 101
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=42.74 E-value=29 Score=25.92 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=30.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEE
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFG 382 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfa 382 (443)
|-+..|.|++..+|+.+++..+++.|++- +.++|-
T Consensus 11 g~~v~~~v~~~t~l~kl~~~y~~~~gi~~---~~~rf~ 45 (72)
T 1wm3_A 11 GSVVQFKIKRHTPLSKLMKAYCERQGLSM---RQIRFR 45 (72)
T ss_dssp SCEEEEEECTTSCTHHHHHHHHHHHTCCT---TTCEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCc---ceEEEE
Confidence 66889999999999999999999999976 455653
No 102
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=42.67 E-value=24 Score=27.74 Aligned_cols=44 Identities=18% Similarity=0.383 Sum_probs=32.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+.+++|++|++++|++.. ..++ +-.++ -|+|+
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~---~qrL--~~~Gk--~L~D~ 53 (98)
T 1yx5_B 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFAGK--QLEDG 53 (98)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHTCCCGG---GEEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChh---hEEE--EECCE--ECCCC
Confidence 556788999999999999999999999853 4444 22343 46665
No 103
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=42.55 E-value=52 Score=26.67 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=37.5
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
.+.|.++.. +...|.+.++...|=.+|-++|++..|++|...||+-
T Consensus 35 ~m~I~Vk~~---~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 35 AMQIFVKTL---TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp CEEEEEECS---SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred cEEEEEEeC---CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 345555432 2356999999999999999999999999999999984
No 104
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=42.49 E-value=20 Score=28.06 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=39.5
Q ss_pred CCeEE-EEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 22 QGFTL-ELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 22 ~~F~l-~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
..|++ .++...|-.+|-++|++..|++|++.||.... +.+ .+ ..+..+|.++
T Consensus 17 ~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k-~~G---k~--L~D~~~L~~~ 69 (90)
T 1v5t_A 17 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLK-VKG---KP--AENDVKLGAL 69 (90)
T ss_dssp EEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCE-ETT---EE--CCTTSBHHHH
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeec-cCC---cC--cCCCCCHHHc
Confidence 45889 99999999999999999999999999998310 122 11 2355677776
No 105
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=42.44 E-value=25 Score=28.66 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=33.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++... .|+ +-.++ -|+|+
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~---QrL--i~~Gk--~L~D~ 88 (111)
T 3vdz_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRL--IFAGK--QLEDG 88 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGG---EEE--EETTE--ECCTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCChHH---EEE--EECCE--ECCCC
Confidence 5678899999999999999999999998543 343 33343 46665
No 106
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=42.36 E-value=35 Score=28.11 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=33.8
Q ss_pred EeecCCcccCCCceEEEecCCCchHHHHHHHHHHhCCCcccc
Q psy17539 335 HFQKDIHNIFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEF 376 (443)
Q Consensus 335 HF~ke~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef 376 (443)
-|.+|.. .|+.++-+.+.|..+..++|++|+.+.|++-..=
T Consensus 27 v~v~d~~-s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~Q 67 (105)
T 4dbg_A 27 VSVEDAQ-MHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQ 67 (105)
T ss_dssp EEEEESS-SCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEEEccC-CCCceEEEEECCcChHHHHHHHHHHHhCCCHHHE
Confidence 3444443 3678999999999999999999999999998655
No 107
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=42.04 E-value=21 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=32.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++. +..|+ +-.++ -|+|+
T Consensus 21 g~~~~l~v~~~~TV~~LK~~I~~~~gip~---~~qrL--~~~Gk--~L~D~ 64 (85)
T 2kd0_A 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLP---RGQKL--IFKGK--VLVET 64 (85)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCCCT---TTCEE--EETTE--ECCTT
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCh---HHEEE--EECCe--ECCCc
Confidence 55677889999999999999999999985 33443 22333 46665
No 108
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.97 E-value=37 Score=27.30 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=43.5
Q ss_pred eEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 9 VEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 9 v~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.|.++... ...|.+.++...|-.+|-++|++..|++|...||+-. |..+ .+..+|.++
T Consensus 24 m~I~Vk~~~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-------Gk~L--~D~~tL~~y 82 (106)
T 1ttn_A 24 CQLRLRLST---GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS-------GRPL--TDKMKFEEL 82 (106)
T ss_dssp EEEEEEETT---TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET-------TEEC--CTTSHHHHC
T ss_pred EEEEEEcCC---CCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC-------CEEC--CCCCcHHHc
Confidence 445544432 3458999999999999999999999999999999752 2222 345677766
No 109
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=41.70 E-value=32 Score=25.49 Aligned_cols=44 Identities=5% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCce-EEE-ecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPF-LLR-IKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF-~f~-v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.+ .+. +.+..+..++|++|++++|++.. ..++ +-.++ -|+|+
T Consensus 12 g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~---~qrL--~~~g~--~L~d~ 57 (78)
T 2faz_A 12 GRQTHTVDSLSRLTKVEELRRKIQELFHVEPG---LQRL--FYRGK--QMEDG 57 (78)
T ss_dssp SSCEEEEEEECTTCBHHHHHHHHHHHHCCCGG---GEEE--EETTE--ECCTT
T ss_pred CCEEEEEeccCCCCCHHHHHHHHHHHHCcChh---hEEE--EECCE--ECCCC
Confidence 4453 677 89999999999999999999854 3333 33444 36665
No 110
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.14 E-value=20 Score=28.53 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=25.7
Q ss_pred CCce-EEEecCCCchHHHHHHHHHHhCCCc
Q psy17539 345 GYPF-LLRIKDNERFSKVKERLAKKLNIQE 373 (443)
Q Consensus 345 GiPF-~f~v~~gE~f~~tK~Rl~~rlgi~~ 373 (443)
|-+| -+.|-+.+++.++|++|++++||+-
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~ 45 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQP 45 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCT
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 5567 4889999999999999999999984
No 111
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.43 E-value=25 Score=27.50 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=26.8
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|-.|.+.+.+..+..++|++|++++|++-.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 55 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNAD 55 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTT
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 567788999999999999999999999854
No 112
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=40.05 E-value=26 Score=27.73 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=31.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 347 PFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 347 PF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
.|.+.+.+..+..++|++|++++|++- ++.|+ +-.++ -|+|+
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~---~~QrL--i~~Gk--~L~D~ 67 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPI---KRMQL--YYSGI--ELADD 67 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCT---TTEEE--EETTE--EECCT
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCH---HHEEE--EECCE--ECCCC
Confidence 577899999999999999999999974 34444 32344 36654
No 113
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=39.97 E-value=40 Score=27.23 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=36.3
Q ss_pred ceEEEEEeCCCCCCCCeEEEEc-ccCCHHHHHHHHHHHcCCCCccEEEEee
Q psy17539 8 RVEVTFCDKTILNDQGFTLELS-LKMTYEQLVALVAQHLNTDKKLIQMFKV 57 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls-~~~tY~~la~~Va~~l~~dp~~lrf~~~ 57 (443)
++.|.++-.. -.+.+++. ..+|-.+|-++|++.++++|+.-||+-.
T Consensus 7 ~M~irvrs~~----G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 7 GTMLRVRSRD----GLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp CEEEEEECSS----CEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred eEEEEEECCC----CCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 4566666432 23678898 9999999999999999999999888643
No 114
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=39.66 E-value=32 Score=28.83 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=40.0
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
..|++.++...|-.+|-++|++..|++|+..||+-. |..+ .++.+|+++
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~-------g~~L--~d~~tL~~~ 59 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-------GKQL--EDGRTLSDY 59 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-------TEEC--CTTSBTGGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC-------CeEC--cCcccHHHh
Confidence 468999999999999999999999999999998752 2222 356777776
No 115
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=39.52 E-value=15 Score=28.46 Aligned_cols=53 Identities=8% Similarity=0.063 Sum_probs=36.1
Q ss_pred CeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 23 GFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 23 ~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
.+.+.++...|..+|-++|++.++++++...++..++ |..++-...+.+|+++
T Consensus 15 ~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~----p~~~l~~~~~~~l~~l 67 (80)
T 2pjh_A 15 VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRN----KTGEITASSSKSLHLL 67 (80)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCC----GGGGSSSCCCCTTTTT
T ss_pred CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCC----CCCcccCCCCCCHHHc
Confidence 4888899999999999999999999866655544432 3223322344455554
No 116
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=39.33 E-value=31 Score=27.56 Aligned_cols=44 Identities=11% Similarity=0.270 Sum_probs=33.1
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|++++|++. +..|+ +-.++ -|+|+
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~---~~qrL--i~~Gk--~L~D~ 77 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHT---DQLVL--IFAGK--ILKDQ 77 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCG---GGEEE--EETTE--EECTT
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcCh---hhEEE--EECCE--ECCCc
Confidence 45688899999999999999999999984 34444 33343 36665
No 117
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=39.15 E-value=63 Score=25.63 Aligned_cols=35 Identities=6% Similarity=0.066 Sum_probs=31.6
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
..+.+.+.+..+-..|.++.+++.|++|..+||.-
T Consensus 18 ~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F 52 (94)
T 2io1_B 18 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 52 (94)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 45788888999999999999999999999999975
No 118
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=39.14 E-value=24 Score=28.20 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=25.9
Q ss_pred CceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 346 YPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 346 iPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
..+-+.+.+..+.+++|++|+.++||+..
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~ 56 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAG 56 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTT
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHH
Confidence 45678899999999999999999999964
No 119
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=38.37 E-value=43 Score=26.23 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=32.1
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHH---cCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQH---LNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~---l~~dp~~lrf~~ 56 (443)
...|++.++...|-.+|-++|++. -|++|+..||+-
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 356999999999999999999999 579999999974
No 120
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=37.69 E-value=38 Score=26.86 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=31.1
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEE
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGV 383 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfal 383 (443)
|-+..|.|++..+|+.+++..+++.|++. +.++|-.
T Consensus 15 g~~v~~~vk~~t~l~kl~~~y~~~~gi~~---~~~rf~F 50 (91)
T 2io0_B 15 GSVVQFKIKRHTPLSKLMKAYCERQGLSM---RQIRFRF 50 (91)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHTTCCS---TTEEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCc---ccEEEEE
Confidence 56889999999999999999999999976 5666644
No 121
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=37.47 E-value=40 Score=26.83 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEE
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGV 383 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfal 383 (443)
|-+..|.|++..+|+.+++..+++.|++. +.++|-.
T Consensus 17 g~~i~~~v~~~t~l~kl~~~y~~~~gi~~---~~~rf~F 52 (94)
T 2io1_B 17 GSVVQFKIKRHTPLSKLMKAYCERQGLSM---RQIRFRF 52 (94)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCG---GGEEEEE
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHhCCCc---ccEEEEE
Confidence 56788999999999999999999999986 4666633
No 122
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.41 E-value=33 Score=26.19 Aligned_cols=30 Identities=10% Similarity=0.323 Sum_probs=26.1
Q ss_pred C-CceEE-EecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 G-YPFLL-RIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 G-iPF~f-~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
| -.|.+ .+.+..+..++|++|++++|++..
T Consensus 17 g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~ 48 (89)
T 1wy8_A 17 GSKTCTIEDVSRKATIEELRERVWALFDVRPE 48 (89)
T ss_dssp CSCEEEEEEECTTCBHHHHHHHHHHHSCCCTT
T ss_pred CCceEEEEecCCCCCHHHHHHHHHHHHCcChh
Confidence 5 46788 599999999999999999999854
No 123
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=36.56 E-value=48 Score=24.71 Aligned_cols=35 Identities=6% Similarity=0.066 Sum_probs=32.0
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
..+.+.+.+..+-..|.++.+++.|++|..+||.-
T Consensus 12 ~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 46 (72)
T 1wm3_A 12 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 46 (72)
T ss_dssp CEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 45888899999999999999999999999999885
No 124
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=36.22 E-value=82 Score=24.81 Aligned_cols=35 Identities=6% Similarity=0.066 Sum_probs=31.8
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
..+.+.+.+..+-..|.++.+++.|++|..+||+-
T Consensus 28 ~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 62 (93)
T 2d07_B 28 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62 (93)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE
Confidence 35888899999999999999999999999999885
No 125
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=36.22 E-value=85 Score=24.77 Aligned_cols=35 Identities=6% Similarity=0.066 Sum_probs=31.7
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
..+.+.+.+..+-..|.++.+++.|++|..+||.-
T Consensus 16 ~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F 50 (91)
T 2io0_B 16 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 50 (91)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 45788889999999999999999999999999985
No 126
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.20 E-value=38 Score=27.02 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=26.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|-.|.+.|.+..+..++|++|++++|++-.
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~ 50 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAE 50 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChH
Confidence 457788999999999999999999999854
No 127
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.01 E-value=32 Score=27.88 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=25.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|=.+-+.|.+..+..++|++|+.++||+-.
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~ 47 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVS 47 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTT
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCChh
Confidence 344567889999999999999999999864
No 128
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=35.82 E-value=33 Score=27.84 Aligned_cols=44 Identities=18% Similarity=0.383 Sum_probs=33.3
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+.+++|++|++++|++-. ..|+ +-.++ -|+|+
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~---~qrL--i~~Gk--~L~D~ 88 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFAGK--QLEDG 88 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTT---TEEE--EETTE--ECCSS
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcc---cEEE--EECCE--ECCCC
Confidence 567888999999999999999999999853 4444 33343 46665
No 129
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=35.58 E-value=29 Score=28.82 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=26.0
Q ss_pred CceEEEecCCchHHHHHHHHHHHhCCCcc
Q psy17539 263 YPFLLRIKDNERFSKVKERLAKKLNIQEK 291 (443)
Q Consensus 263 ipf~f~l~~~e~~~d~~~rL~~k~~l~~~ 291 (443)
.++.+.+.++.|+.++++.|+.+.|++..
T Consensus 18 ~~~e~~v~~~~TV~~lK~ki~~~~Gip~~ 46 (122)
T 1t0y_A 18 FPMEKKYPAGMSLNDLKKKLELVVGTTVD 46 (122)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCTT
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 36788999999999999999999999864
No 130
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=34.62 E-value=27 Score=27.38 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=24.5
Q ss_pred eEEEecCCchHHHHHHHHHHHhCCCccc
Q psy17539 265 FLLRIKDNERFSKVKERLAKKLNIQEKE 292 (443)
Q Consensus 265 f~f~l~~~e~~~d~~~rL~~k~~l~~~~ 292 (443)
+..++.+..|+.++|+.|+.+.|++...
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~ 44 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEY 44 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGG
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHH
Confidence 4567789999999999999999998754
No 131
>4iiw_A LMO1499 protein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PGE; 2.60A {Listeria monocytogenes}
Probab=34.44 E-value=37 Score=33.76 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=29.2
Q ss_pred CceEEEecCCCchHHHHHHHHH-HhCCCcccccc
Q psy17539 346 YPFLLRIKDNERFSKVKERLAK-KLNIQEKEFEK 378 (443)
Q Consensus 346 iPF~f~v~~gE~f~~tK~Rl~~-rlgi~~kef~K 378 (443)
.++.+.|.+|.++.++.+||.+ ..+++..+|.+
T Consensus 107 ~~~~vtipEG~t~~~i~~~l~~~~~~~~~~~~~~ 140 (349)
T 4iiw_A 107 APAKLVIPEGYTLDQIADRIVAYQPKLKKADVLK 140 (349)
T ss_dssp BCCCEEECTTCCHHHHHHHHHHHSTTSCHHHHHH
T ss_pred eeEEEEECCCCcHHHHHHHHHhhccCCCHHHHHH
Confidence 3577889999999999999999 99999888864
No 132
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=33.52 E-value=40 Score=27.60 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|-.|.+.+.+..+..++|++|++++|++..
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 48 (114)
T 2kdi_A 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPD 48 (114)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHHCcChH
Confidence 567788899999999999999999999854
No 133
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=39.66 E-value=8.9 Score=28.53 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=32.0
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
...|++.++...|-.+|-++|++..|++|+..||+-
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 45 (76)
T 3b1l_X 10 SYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF 45 (76)
Confidence 345888999999999999999999999999999864
No 134
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.27 E-value=30 Score=27.91 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|--|.+.|.+..+..++|++|++++|++-..
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 41 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQ 41 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGG
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhh
Confidence 5568888999999999999999999997543
No 135
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=33.27 E-value=40 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.7
Q ss_pred CCCceEEEecC-CCchHHHHHHHHHHhCCCc
Q psy17539 344 FGYPFLLRIKD-NERFSKVKERLAKKLNIQE 373 (443)
Q Consensus 344 hGiPF~f~v~~-gE~f~~tK~Rl~~rlgi~~ 373 (443)
-|-.|.+.+.+ ..+..++|++|++++|++-
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~ 69 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPA 69 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCT
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCH
Confidence 36678889998 9999999999999999984
No 136
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=33.14 E-value=1.2e+02 Score=24.82 Aligned_cols=49 Identities=8% Similarity=0.238 Sum_probs=39.0
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
..+.+.+.+..+-..|.++.+++.|++|..+||.-- |.+|. .+.|+.++
T Consensus 37 ~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd-------G~~L~--~~~Tp~dl 85 (110)
T 2k8h_A 37 AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD-------GTPID--ETKTPEEL 85 (110)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS-------SCBCC--SSSHHHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC-------CEEcC--CCCCHHHc
Confidence 358888999999999999999999999999998753 33333 35677765
No 137
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=32.23 E-value=24 Score=28.35 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=26.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|-.|.+.+.+..+.+++|++|++++|++-..
T Consensus 37 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 67 (101)
T 3m63_B 37 QDKWEVNVAPESTVLQFKEAINKANGIPVAN 67 (101)
T ss_dssp SCCCCBCCCTTSBHHHHHHHHHHHHSCCSTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHCcChHH
Confidence 5566778899999999999999999998543
No 138
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=31.72 E-value=63 Score=27.13 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=41.0
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL 80 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l 80 (443)
.++.|.+....|-.+|=++|++..|++|+..||.- + | .. ..+..||+|+=
T Consensus 12 tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~-~---G---k~--LeD~~TLsdy~ 61 (118)
T 2fnj_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK-D---D---QL--LDDGKTLGECG 61 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE-T---T---EE--CCTTSBHHHHT
T ss_pred EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE-C---C---eE--CCCCCCHHHcC
Confidence 35899999999999999999999999999999983 2 2 22 35678999873
No 139
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=31.61 E-value=32 Score=27.76 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=33.0
Q ss_pred CCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 21 DQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 21 ~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
...|++.++...|=.+|-++|++..|++|+..||.-
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 46 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY 46 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 456999999999999999999999999999999874
No 140
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.28 E-value=29 Score=27.89 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=26.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|-.|.+.|.+..+..++|++|++++|++-.
T Consensus 33 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 62 (106)
T 1ttn_A 33 GKDLKLVVRSTDTVFHMKRRLHAAEGVEPG 62 (106)
T ss_dssp TEEEEEEECTTSHHHHHHHHHHHTTCCCST
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCcCcc
Confidence 566788999999999999999999999743
No 141
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=30.70 E-value=42 Score=27.12 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.7
Q ss_pred EEEec-CCCchHHHHHHHHHHhCCCccc
Q psy17539 349 LLRIK-DNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 349 ~f~v~-~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
.+.|- +..++.++|++|+.++|++-..
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~ 47 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHN 47 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCccc
Confidence 56778 8999999999999999998655
No 142
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.17 E-value=45 Score=27.91 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.|.+..+..++|++|++++|++- +..|+ +-.++ -|+|+
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~---~~QrL--i~~Gk--~L~D~ 84 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQT---DQLVL--IFAGK--ILKDQ 84 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCS---SSEEE--EETTE--EESTT
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCc---ceEEE--EECCE--EcCCC
Confidence 45688899999999999999999999984 34444 32333 36654
No 143
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=29.95 E-value=56 Score=24.49 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=32.3
Q ss_pred CCceEEEecCCCchHHHHHHHHHH---hCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKK---LNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~r---lgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|+++ .|++- +..++ +-.++ -|+|+
T Consensus 15 g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~---~~qrL--i~~Gk--~L~D~ 61 (85)
T 2wyq_A 15 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV---AGQKL--IYAGK--ILSDD 61 (85)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCG---GGEEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhccccCCCH---HHeEE--EECCE--ECcCC
Confidence 566788999999999999999998 67763 44554 33343 46665
No 144
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=29.59 E-value=50 Score=26.28 Aligned_cols=41 Identities=10% Similarity=0.287 Sum_probs=30.9
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 348 FLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 348 F~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|.+.+.+..+..++|++|++++|++- +..|+ +-.++ -|+|+
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~---~~QrL--i~~Gk--~L~D~ 74 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHP---DQLVL--IFAGK--ILKDP 74 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCG---GGEEE--EETTE--ECCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCh---hhEEE--EECCE--ECCCc
Confidence 67889999999999999999999984 44444 32343 46665
No 145
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=28.94 E-value=50 Score=27.72 Aligned_cols=42 Identities=10% Similarity=0.242 Sum_probs=31.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 347 PFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 347 PF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
-+.+-+.+.++..++|++|+.+.||+-.+. | |+-.++ -|+|+
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQ---r--Li~~Gk--~LeD~ 54 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQ---R--LYKDDQ--LLDDG 54 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGE---E--EEETTE--ECCTT
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHe---E--EEECCe--ECCCC
Confidence 466789999999999999999999986543 2 333454 36665
No 146
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=28.79 E-value=1.1e+02 Score=25.31 Aligned_cols=87 Identities=20% Similarity=0.129 Sum_probs=56.2
Q ss_pred cceEEEEEeCCCCC--C---CCeEEEEcccCCHHHHHHHHHHHcCCC---------------CccEEEEeeccCCCCCCC
Q psy17539 7 NRVEVTFCDKTILN--D---QGFTLELSLKMTYEQLVALVAQHLNTD---------------KKLIQMFKVQAYKDTPGN 66 (443)
Q Consensus 7 nRv~V~F~~~~~~~--~---~~F~l~Ls~~~tY~~la~~Va~~l~~d---------------p~~lrf~~~~~~~~~p~~ 66 (443)
+-|++.|+|..... + ..=-+--+...|=|-|++++|-+|.++ ...++|+..-+ .+||+
T Consensus 2 ~EiELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia--~~~gq 79 (111)
T 3gs2_A 2 SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIA--TASGQ 79 (111)
T ss_dssp CEEEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEE--CTTSC
T ss_pred CceEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEc--cCCCe
Confidence 46889999964321 1 113345677889999999999988554 12446554432 35677
Q ss_pred CccCCCCCcHHHhcCCCCCCCCCceeeee
Q psy17539 67 PLPHNFEGTLKDILAPINKPKMPKKMHYQ 95 (443)
Q Consensus 67 ~i~~~~~~~L~d~l~~~~~~~~~~~l~YE 95 (443)
-...+.+.+|.++=-.+-++.-+-.|||-
T Consensus 80 ~~~L~gs~tLe~VneKywkvnkplelYYa 108 (111)
T 3gs2_A 80 FTVLDGSFSLELVSEKYWKVNKPMELYYA 108 (111)
T ss_dssp EEECCTTSBHHHHHHHHTCSSSCEEEEEE
T ss_pred EEEccCcccHHHHhhhhccCCCCeeEEec
Confidence 67777888998876544444445568874
No 147
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.35 E-value=1.2e+02 Score=25.58 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=42.7
Q ss_pred eEEEecCCchHHHHHHHHHHHhCCCccccceeEEEeecCCCCcCCCCcccccccCCCCCCCCCCceEeEEEeecCCc
Q psy17539 265 FLLRIKDNERFSKVKERLAKKLNIQEKEFEKVRVQDKIHPGRESNPWPSAYMANAPPSKSNPDELLIPVAHFQKDIH 341 (443)
Q Consensus 265 f~f~l~~~e~~~d~~~rL~~k~~l~~~~~~kir~~e~~~~~k~~k~~~~~~~E~ip~ee~~~~~~lI~vfHF~ke~~ 341 (443)
|.+.+.++.++.|+|+.++.+++++.+. +|+ +|.||+.|+-.++-.=-| ++...|+.-=|+-+|.
T Consensus 29 ~tv~v~~d~TV~dLKe~ls~~~~iP~e~---qrL---Iy~GKiLKD~eTL~~~gI------k~g~TIhLvi~s~~p~ 93 (118)
T 2daf_A 29 IVIPFKVDTILKYLKDHFSHLLGIPHSV---LQI---RYSGKILKNNETLVQHGV------KPQEIVQVEIFSTNPD 93 (118)
T ss_dssp EEEEECSSSCSHHHHHHHHHHHTCCTTT---EEE---EETTEEECSSCCHHHHSC------CSSCEEEEEEEESCTT
T ss_pred EEEEeCCCCcHHHHHHHHHhhhCCChHH---EEE---EECCeEcCCcchHHHcCC------CCCCEEEEEEecCCCc
Confidence 3455679999999999999999988754 443 578898887544433222 2344555555554443
No 148
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.96 E-value=1.1e+02 Score=24.67 Aligned_cols=35 Identities=6% Similarity=0.066 Sum_probs=31.9
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
..+.+.+.+..+-..|.++.+++.|++|..+||+-
T Consensus 35 ~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F 69 (104)
T 1wz0_A 35 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69 (104)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES
T ss_pred CEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 35888899999999999999999999999999885
No 149
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.91 E-value=50 Score=26.39 Aligned_cols=41 Identities=10% Similarity=0.287 Sum_probs=30.9
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 348 FLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 348 F~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|.+.|.+..+..++|++|++++|++- +..|+ +-.++ -|+|+
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~---~~qrL--i~~Gk--~L~D~ 69 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHP---DQLVL--IFAGK--ILKDP 69 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCT---TTEEE--EETTE--ECCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCh---hhEEE--EECCE--ECCCc
Confidence 67889999999999999999999974 44554 32343 46665
No 150
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=27.74 E-value=1.2e+02 Score=24.12 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=43.0
Q ss_pred cceEEEEEeCCCCCCCCeEE--EEcccCCHHHHHHHH-HHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 7 NRVEVTFCDKTILNDQGFTL--ELSLKMTYEQLVALV-AQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 7 nRv~V~F~~~~~~~~~~F~l--~Ls~~~tY~~la~~V-a~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
..+.|+++-.. .+.|++ .++...|=.+|-++| ++.-|++|+..||.-. |..+ .+..+|+++
T Consensus 18 ~~m~I~VKtl~---g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~-------Gk~L--~D~~tL~dy 81 (98)
T 4a20_A 18 AAVHLTLKKIQ---APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK-------GKVL--HDNLFLSDL 81 (98)
T ss_dssp CCEEEEEEECS---SSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET-------TEEE--CTTCBGGGS
T ss_pred CCEEEEEEcCC---CCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC-------CEEC--cCcCCHHHc
Confidence 45667776643 235666 556999999999999 7777999999998742 2222 356677775
No 151
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=27.65 E-value=1.2e+02 Score=24.38 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=30.9
Q ss_pred CeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 23 GFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 23 ~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
.+.+.+.+..+..-|..+-|++.|+++..+||+-
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F 71 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF 71 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 4778888899999999999999999999999986
No 152
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.39 E-value=60 Score=25.04 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=30.2
Q ss_pred CceEEEecCC-----CchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 346 YPFLLRIKDN-----ERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 346 iPF~f~v~~g-----E~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
-.|-+.+-+. .+..++|++|++++|++- ++.|+ +-.++ -|.|+
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~---~~qrL--~~~Gk--~L~D~ 64 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQ---SFQKL--IFKGK--SLKEM 64 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCT---TTCEE--EETTE--EECCS
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCH---HHEEE--EECCe--ecCCC
Confidence 4556777775 999999999999999984 34443 22333 46664
No 153
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=27.24 E-value=67 Score=25.34 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=23.7
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 348 FLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 348 F~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
+-+++-+|=+|++++++|++||+++..
T Consensus 16 vairvp~~~~y~~L~~~l~~kL~l~~~ 42 (83)
T 1oey_A 16 VVMKTQPGLPYSQVRDMVSKKLELRLE 42 (83)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457788999999999999999999853
No 154
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.04 E-value=58 Score=25.43 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=31.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHH---hCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKK---LNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~r---lgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|-.|.+.+.+..+..++|++|+++ .|++- +..|+ +-.++ -|+|+
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~---~~qrL--i~~Gk--~L~D~ 56 (95)
T 1uel_A 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPV---AGQKL--IYAGK--ILNDD 56 (95)
T ss_dssp CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCT---TTEEE--EETTE--ECCTT
T ss_pred CCEEEEEECCCCHHHHHHHHHHhhcccCCCCh---hhEEE--EECCE--ECCCc
Confidence 566788999999999999999999 67763 34444 32343 36654
No 155
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=26.97 E-value=65 Score=24.53 Aligned_cols=36 Identities=6% Similarity=0.126 Sum_probs=30.1
Q ss_pred CC-ceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEE
Q psy17539 345 GY-PFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGV 383 (443)
Q Consensus 345 Gi-PF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfal 383 (443)
|- ++.|.|++..+|+.+++..+++.|++.. .++|-.
T Consensus 17 g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~---~~rf~f 53 (79)
T 3a4r_A 17 KHQMLEISLSPDSPLKVLMSHYEEAMGLSGH---KLSFFF 53 (79)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHTCTTC---CCEEEE
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCcc---cEEEEE
Confidence 53 8899999999999999999999999854 456533
No 156
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=32.57 E-value=14 Score=27.45 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=25.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 374 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~k 374 (443)
|-.|.+.+.+..+.+++|++|++++|++..
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~ 39 (76)
T 3b1l_X 10 SYGFPVEVDSDTSILQLKEVVAKQQGVPAD 39 (76)
Confidence 556778888999999999999999999843
No 157
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=26.14 E-value=53 Score=27.63 Aligned_cols=46 Identities=9% Similarity=0.183 Sum_probs=33.6
Q ss_pred cCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 343 IFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 343 ~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
.|..=+.+-+.+.++..++|++|+.+.|++-.+ -| |+-.++ -|+|+
T Consensus 9 r~ktTI~ldve~sdTV~~lK~kI~~~~giPp~q---Qr--LI~~Gk--~LeD~ 54 (118)
T 4ajy_B 9 RHKTTIFTDAKESSTVFELKRIVEGILKRPPDE---QR--LYKDDQ--LLDDG 54 (118)
T ss_dssp EBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGG---EE--EEETTE--ECCTT
T ss_pred cCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHH---eE--EEeCCe--ECCCc
Confidence 344556778999999999999999999998754 23 333443 46665
No 158
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=26.11 E-value=51 Score=28.00 Aligned_cols=34 Identities=6% Similarity=0.287 Sum_probs=28.3
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEE
Q psy17539 348 FLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVI 384 (443)
Q Consensus 348 F~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv 384 (443)
-.|+|....+|.+.++.+.+.+|++... ++|=.+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~---~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQ---IRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGG---CEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCccc---EEEEEe
Confidence 3579999999999999999999999655 555555
No 159
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=25.79 E-value=65 Score=26.28 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=29.0
Q ss_pred EeecCCcccCCCc--eEEEecCCCchHHHHHHHHHHhCCC
Q psy17539 335 HFQKDIHNIFGYP--FLLRIKDNERFSKVKERLAKKLNIQ 372 (443)
Q Consensus 335 HF~ke~~~~hGiP--F~f~v~~gE~f~~tK~Rl~~rlgi~ 372 (443)
||..+.++ .+++ |.++|-++=.|.+...||++|++++
T Consensus 11 ~y~~~~~~-~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 11 SYNNNSNN-TSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EECSSCSS-CCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EecCcccc-cccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 55544333 3467 8888889999999999999999986
No 160
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=25.21 E-value=57 Score=28.68 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=27.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|-.|.+.+.+..+..++|++|++++|++-.+
T Consensus 10 Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 40 (169)
T 3l0w_B 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40 (169)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCTTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHH
Confidence 5678889999999999999999999998644
No 161
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.16 E-value=64 Score=26.23 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=33.1
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
|--|.+.|.++.+.+++|++|+++.|++... .|+ |-.+|. |+|+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~q---QrL--I~~GKi--L~D~ 72 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENY---IKI--VINKKQ--LQLG 72 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTT---CEE--EETTEE--CCTT
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHH---eEE--EeCCeE--CCCC
Confidence 4567889999999999999999999998543 333 434553 6665
No 162
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=24.93 E-value=53 Score=26.74 Aligned_cols=46 Identities=13% Similarity=0.288 Sum_probs=34.0
Q ss_pred cCCCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEEEEEcCcceecCCC
Q psy17539 343 IFGYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 343 ~hGiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
-.|-.|.+.|.+..+..++|++|++++|++. +..|+-+ .++ -|+|+
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~---~~QrL~~--~Gk--~L~D~ 88 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPA---GKQKLQY--EGI--FIKDS 88 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCT---TTEEEEE--TTE--EECTT
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCCh---HHEEEEE--CCE--ECCCC
Confidence 3466788899999999999999999999984 3444422 343 46665
No 163
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.68 E-value=70 Score=24.75 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=30.9
Q ss_pred CceEEEecCCCchHHHHHHHHHHh--CCCcccccceeEEEEEcCcceecCCC
Q psy17539 346 YPFLLRIKDNERFSKVKERLAKKL--NIQEKEFEKYKFGVINNNRITYIEED 395 (443)
Q Consensus 346 iPF~f~v~~gE~f~~tK~Rl~~rl--gi~~kef~K~Kfalv~~~~~~yl~dd 395 (443)
.+|.+.+.+.++..++|++|++++ |++- ++.|+ +-.+ .-|+|+
T Consensus 20 ~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~---~~QrL--i~~G--k~L~D~ 64 (93)
T 1wgd_A 20 RDLELSGDRGWSVGHLKAHLSRVYPERPRP---EDQRL--IYSG--KLLLDH 64 (93)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHSTTCCCT---TTCEE--EETT--EECCSS
T ss_pred EEEEEecCCCCcHHHHHHHHHHHhcCCCCh---HHeEE--EECC--EECcCc
Confidence 366677779999999999999999 9874 34443 2233 357765
No 164
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=24.47 E-value=46 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=23.5
Q ss_pred CeEEEEcccCCHHHHHHHHHHHcCCC
Q psy17539 23 GFTLELSLKMTYEQLVALVAQHLNTD 48 (443)
Q Consensus 23 ~F~l~Ls~~~tY~~la~~Va~~l~~d 48 (443)
.+.+.++..++|++|..+|.++|+..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 47889999999999999999999963
No 165
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=23.86 E-value=1.2e+02 Score=23.84 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=29.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEE
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFG 382 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfa 382 (443)
|-++.|.|++..+|+.+++..+++.|++-. .++|-
T Consensus 27 g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~---~~rf~ 61 (93)
T 2d07_B 27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMR---QIRFR 61 (93)
T ss_dssp SCEEEEEEETTSCHHHHHHHHHHHHTCCGG---GEEEE
T ss_pred CCEEEEEEccCCHHHHHHHHHHHHhCCCcc---ceEEE
Confidence 567899999999999999999999999864 55553
No 166
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=23.67 E-value=1.4e+02 Score=24.24 Aligned_cols=35 Identities=6% Similarity=0.165 Sum_probs=31.0
Q ss_pred CCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEe
Q psy17539 22 QGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFK 56 (443)
Q Consensus 22 ~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~ 56 (443)
....+.+.+..+-..|.++.+++.|+++..+||+-
T Consensus 41 ~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F 75 (106)
T 2eke_C 41 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 75 (106)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 34677788888889999999999999999999986
No 167
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=23.62 E-value=1.4e+02 Score=23.87 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=30.8
Q ss_pred cceEEEEEeCCC-CCCCCeEEEEcccCCHHHHHHHHHHHcCCC
Q psy17539 7 NRVEVTFCDKTI-LNDQGFTLELSLKMTYEQLVALVAQHLNTD 48 (443)
Q Consensus 7 nRv~V~F~~~~~-~~~~~F~l~Ls~~~tY~~la~~Va~~l~~d 48 (443)
.+|.|+|++... |.=+.=...++..+|-.++..-+-++|+++
T Consensus 7 ~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l~ 49 (91)
T 3w1s_C 7 QKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKMD 49 (91)
T ss_dssp CEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTCS
T ss_pred CeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCCc
Confidence 479999999533 321223456899999999999999999995
No 168
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.15 E-value=44 Score=27.39 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCceEEEecCCchHHHHHHHHHHHhCCCc
Q psy17539 262 GYPFLLRIKDNERFSKVKERLAKKLNIQE 290 (443)
Q Consensus 262 gipf~f~l~~~e~~~d~~~rL~~k~~l~~ 290 (443)
|-.|.+.+.++.||.|+|+.++++.+++.
T Consensus 17 g~~~~v~V~~~~TV~dLK~~I~~~~~i~~ 45 (105)
T 1v2y_A 17 GEVMPVVVVQNATVLDLKKAIQRYVQLKQ 45 (105)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 44577888999999999999999998865
No 169
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=22.93 E-value=1.8e+02 Score=23.36 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=33.0
Q ss_pred cceEEEEEeCCC-CCCCCeEEEEcccCCHHHHHHHHHHHcCCC
Q psy17539 7 NRVEVTFCDKTI-LNDQGFTLELSLKMTYEQLVALVAQHLNTD 48 (443)
Q Consensus 7 nRv~V~F~~~~~-~~~~~F~l~Ls~~~tY~~la~~Va~~l~~d 48 (443)
.+|.|.|++... |.=+.=...++..+|-.++...+-++|+++
T Consensus 12 ~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~ 54 (96)
T 1wz3_A 12 QKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD 54 (96)
T ss_dssp CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS
T ss_pred CeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc
Confidence 589999999743 211223556899999999999999999998
No 170
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=22.64 E-value=71 Score=22.49 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCCCccEEEEee
Q psy17539 34 YEQLVALVAQHLNTDKKLIQMFKV 57 (443)
Q Consensus 34 Y~~la~~Va~~l~~dp~~lrf~~~ 57 (443)
+..|++.+++.||++|+++...-.
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~i~ 44 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVILY 44 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEEE
Confidence 568889999999999998887654
No 171
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=22.64 E-value=68 Score=25.61 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=23.7
Q ss_pred EEEecCCchHHHHHHHHHHHhCCCcc
Q psy17539 266 LLRIKDNERFSKVKERLAKKLNIQEK 291 (443)
Q Consensus 266 ~f~l~~~e~~~d~~~rL~~k~~l~~~ 291 (443)
+|.++.+.||+.+..-|.+|++++++
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~ 48 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVAS 48 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSS
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCC
Confidence 58889999999999999999999764
No 172
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=22.16 E-value=79 Score=28.56 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=27.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCccc
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKE 375 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~ke 375 (443)
|-.|.+.|.+.++..++|++|++++|++..+
T Consensus 115 Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~ 145 (189)
T 3q3f_A 115 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 145 (189)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCEEEEEeCCCCcHHHHHHHHHhccCCCHHH
Confidence 5668889999999999999999999998644
No 173
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=21.99 E-value=1.1e+02 Score=23.79 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=42.0
Q ss_pred EEEEEeCCCCCCCCeEEE--EcccCCHHHHHHHH-HHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHhc
Q psy17539 10 EVTFCDKTILNDQGFTLE--LSLKMTYEQLVALV-AQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDIL 80 (443)
Q Consensus 10 ~V~F~~~~~~~~~~F~l~--Ls~~~tY~~la~~V-a~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~l 80 (443)
.|.++... .+.|++. ++...|=.++=++| ++.-|++|+..||.-. |..+ .+..+|+++=
T Consensus 3 qI~VKtl~---g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~-------Gk~L--~D~~tL~~y~ 64 (87)
T 2lxa_A 3 HLTLKKIQ---APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK-------GKVL--HDNLFLSDLK 64 (87)
T ss_dssp EEEEEECS---SSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET-------TEEC--CTTCBHHHHC
T ss_pred EEEEEcCC---CCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC-------CEEC--cCcCCHHHcC
Confidence 45555432 3446665 55999999999999 8888999999999853 2222 4567888773
No 174
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=21.92 E-value=92 Score=25.60 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=29.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHHhCCCcccccceeEE
Q psy17539 345 GYPFLLRIKDNERFSKVKERLAKKLNIQEKEFEKYKFG 382 (443)
Q Consensus 345 GiPF~f~v~~gE~f~~tK~Rl~~rlgi~~kef~K~Kfa 382 (443)
|-+..|.|++..+|+.+++..+++.|++.. .++|-
T Consensus 36 g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~---~~rfi 70 (110)
T 2k8h_A 36 GAEMFFRIKSRTALKKLIDTYCKKQGISRN---SVRFL 70 (110)
T ss_dssp SCCEEEEECTTSSHHHHHHHHHHHHTCCSS---SCEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcc---cEEEE
Confidence 567899999999999999999999999754 45553
No 175
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.26 E-value=68 Score=25.16 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=26.3
Q ss_pred CCceEEEecCCchHHHHHHHHHHHhCCCcc
Q psy17539 262 GYPFLLRIKDNERFSKVKERLAKKLNIQEK 291 (443)
Q Consensus 262 gipf~f~l~~~e~~~d~~~rL~~k~~l~~~ 291 (443)
|..+...++++-|+.++|..|++.+|++..
T Consensus 22 ~~~~e~~l~~~~TV~~LK~~i~~~~gip~~ 51 (97)
T 1wjn_A 22 RQILEKQLPDSMTVQKVKGLLSRLLKVPVS 51 (97)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHTTTTCCTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCChh
Confidence 456778889999999999999999999874
No 176
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.13 E-value=1.9e+02 Score=23.09 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=40.1
Q ss_pred eEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 24 FTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 24 F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
+.+.+|-+++..++.-.|.++-+.||++.-|...+. +..++-. +-+|.|+
T Consensus 23 tVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~----~~e~LdL--skSLndl 72 (91)
T 2daj_A 23 TIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQ----SQEPLDL--TKSLNDL 72 (91)
T ss_dssp EEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSS----CCCBCCT--TSCHHHH
T ss_pred eEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCC----CCcccch--hcchhhh
Confidence 788999999999999999999999999998887643 3333333 5577776
No 177
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=21.03 E-value=1.3e+02 Score=27.06 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=44.5
Q ss_pred ceEEEEEeCCCCCCCCeEEEEcccCCHHHHHHHHHHHcCCCCccEEEEeeccCCCCCCCCccCCCCCcHHHh
Q psy17539 8 RVEVTFCDKTILNDQGFTLELSLKMTYEQLVALVAQHLNTDKKLIQMFKVQAYKDTPGNPLPHNFEGTLKDI 79 (443)
Q Consensus 8 Rv~V~F~~~~~~~~~~F~l~Ls~~~tY~~la~~Va~~l~~dp~~lrf~~~~~~~~~p~~~i~~~~~~~L~d~ 79 (443)
++.|.++.. +...|++.++...|=.+|-++|++..|++|+..||.-. |.. ..+..+|+++
T Consensus 105 eMqI~VKtl---~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~-------Gk~--L~D~~tL~dy 164 (189)
T 3q3f_A 105 GGQIFVKTL---TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-------GKQ--LEDGRTLSDY 164 (189)
T ss_dssp CEEEEEECT---TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET-------TEE--CCTTCBGGGG
T ss_pred ceeeeeecC---CCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC-------CEE--CCCCCCHHHC
Confidence 455555442 24569999999999999999999999999999998742 222 2346677776
No 178
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=20.61 E-value=66 Score=24.70 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=23.6
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCcccc
Q psy17539 348 FLLRIKDNERFSKVKERLAKKLNIQEKEF 376 (443)
Q Consensus 348 F~f~v~~gE~f~~tK~Rl~~rlgi~~kef 376 (443)
|.+.+-+..+|.++++.|+++++++...|
T Consensus 16 ~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~ 44 (80)
T 2pjh_A 16 KRITATKRETAATFLKKVAKEFGFQNNGF 44 (80)
T ss_dssp EECCCCSSCCHHHHHHHHHHHTCCCTTTC
T ss_pred EEEEcCCcChHHHHHHHHHHHcCCCCCcc
Confidence 44456678999999999999999986554
Done!