RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17539
         (443 letters)



>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 293

 Score = 26.0 bits (57), Expect = 8.7
 Identities = 4/20 (20%), Positives = 12/20 (60%)

Query: 320 PPSKSNPDELLIPVAHFQKD 339
           PP+ +  ++ L+ +   Q++
Sbjct: 267 PPTDAPSEQALLSLVPVQRE 286



 Score = 26.0 bits (57), Expect = 8.9
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 18/82 (21%)

Query: 185 LLGPDNGGSGLLRLLE-----ISNQKITAELDHSVSMDQLFGMNATTKIYRLEEIPQDEV 239
           LLGP+       +L       +S +    +   + S  +L        ++ LE      +
Sbjct: 213 LLGPEAPHIDYTQLGRAAATLMSERVFRIDAYMAQSRGEL--------LHSLEGFLDCSL 264

Query: 240 SL-----DPDELLIPVAHFQKD 256
            L       ++ L+ +   Q++
Sbjct: 265 VLPPTDAPSEQALLSLVPVQRE 286


>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 155

 Score = 25.6 bits (56), Expect = 9.1
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 7/63 (11%)

Query: 240 SLDPDELLIPVAHFQKDIHNIFGYPFLLRIKDNER---FSKVKERLAKKLNIQEKEFEKV 296
           +     L   +A +       FG+ F++             +KER     N    E E  
Sbjct: 82  TTSASALQE-LAEWNVLYKKKFGFIFIICASGRTHAEMLHALKERYE---NRPIVELEIA 137

Query: 297 RVQ 299
            ++
Sbjct: 138 AME 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,702,875
Number of extensions: 85298
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 12
Length of query: 443
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,199,356
Effective search space: 425771380
Effective search space used: 425771380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)