BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17541
(717 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 133/266 (50%), Gaps = 8/266 (3%)
Query: 448 FEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDT-QARLRLKEVIATYIHE 506
F + + A L + RP +VS+ NA+++ + D Q R + +IH
Sbjct: 47 FWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHN 106
Query: 507 QVDMAGNAICMFFHNKLANDDVILTYGCSSLVE-KILLTAHEKGTKFRVIIVDGSPWYEG 565
+ A I F ++ + DVI+T+ C S ++ TA E+G +VI+ + P ++G
Sbjct: 107 S-EKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQG 165
Query: 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA 625
K + L + + YV+ SA + M+ KV++GA ++ NGAV+++ GTA ++L A+
Sbjct: 166 KITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKE 225
Query: 626 FNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNW-KSLAHLTPLSLTYDI 684
V + A ET+KF LV E+ DP E+I + K W K++ P +D+
Sbjct: 226 HRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDE-LKTWPKNIEVWNP---AFDV 281
Query: 685 TPSHLVTAVITELAIVPCTSVPVVLR 710
TP V +ITE I+P + +LR
Sbjct: 282 TPPEYVDVIITERGIIPPYAAIDILR 307
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 136/267 (50%), Gaps = 10/267 (3%)
Query: 448 FEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIAT--YIH 505
F + + A L + RP +VS+ NA+++ H ++ +LR + A +IH
Sbjct: 46 FWKEMKQAAKILFETRPTAVSLPNALRYV-MHRGKIAYSSGADLEQLRFVIINAAKEFIH 104
Query: 506 EQVDMAGNAICMFFHNKLANDDVILTYGCSSLVE-KILLTAHEKGTKFRVIIVDGSPWYE 564
+ A I F ++ + DVI+T+ C S ++ TA E+G +VI+ + P ++
Sbjct: 105 NS-EKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQ 163
Query: 565 GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVAR 624
GK + L + + YV+ SA + M+ KV++GA ++ NGAV+++ GTA ++L A+
Sbjct: 164 GKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAK 223
Query: 625 AFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNW-KSLAHLTPLSLTYD 683
V + A ET+KF LV E+ DP E+I + K W K++ P +D
Sbjct: 224 EHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDE-LKTWPKNIEVWNP---AFD 279
Query: 684 ITPSHLVTAVITELAIVPCTSVPVVLR 710
+TP V +ITE I+P + +LR
Sbjct: 280 VTPPEYVDVIITERGIIPPYAAIDILR 306
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 133/266 (50%), Gaps = 8/266 (3%)
Query: 448 FEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDT-QARLRLKEVIATYIHE 506
F + + A L + RP +VS+ NA+++ + D Q R + +IH
Sbjct: 48 FWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHN 107
Query: 507 QVDMAGNAICMFFHNKLANDDVILTYGCSSLVE-KILLTAHEKGTKFRVIIVDGSPWYEG 565
+ A I F ++ + DVI+T+ C S ++ TA E+G +VI+ + P ++G
Sbjct: 108 S-EKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQG 166
Query: 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA 625
K + L + + YV+ SA + M+ KV++GA ++ NGAV+++ GTA ++L A+
Sbjct: 167 KITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKE 226
Query: 626 FNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNW-KSLAHLTPLSLTYDI 684
V + A ET+KF LV E+ DP E+I + K W K++ P +D+
Sbjct: 227 HRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDE-LKTWPKNIEVWNP---AFDV 282
Query: 685 TPSHLVTAVITELAIVPCTSVPVVLR 710
TP V +ITE I+P + +LR
Sbjct: 283 TPPEYVDVIITERGIIPPYAAIDILR 308
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 132/265 (49%), Gaps = 7/265 (2%)
Query: 448 FEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDT-QARLRLKEVIATYIHE 506
F + + A L + RP +VS+ NA+++ + D Q R + +IH
Sbjct: 64 FWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHN 123
Query: 507 QVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK 566
+ A I F ++ + DVI+T+ S ++ TA E+G +VI+ + P ++GK
Sbjct: 124 S-EKALERIGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGK 182
Query: 567 EMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAF 626
+ L + + YV+ SA + M+ KV++GA ++ NGAV+++ GTA ++L A+
Sbjct: 183 ITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEH 242
Query: 627 NVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNW-KSLAHLTPLSLTYDIT 685
V + A ET+KF LV E+ DP E+I + K W K++ P +D+T
Sbjct: 243 RVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDE-LKTWPKNIEVWNP---AFDVT 298
Query: 686 PSHLVTAVITELAIVPCTSVPVVLR 710
P V +ITE I+P + +LR
Sbjct: 299 PPEYVDVIITERGIIPPYAAIDILR 323
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 135/266 (50%), Gaps = 9/266 (3%)
Query: 448 FEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIAT--YIH 505
F + + A L + RP +VS+ NA+++ H ++ +LR + A +IH
Sbjct: 64 FWKEMKQAAKILFETRPTAVSLPNALRYV-MHRGKIAYSSGADLEQLRFVIINAAKEFIH 122
Query: 506 EQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG 565
+ A I F ++ + DVI+T+ S ++ TA E+G +VI+ + P ++G
Sbjct: 123 NS-EKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQG 181
Query: 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA 625
K + L + + YV+ SA + M+ KV++GA ++ NGAV+++ GTA ++L A+
Sbjct: 182 KITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKE 241
Query: 626 FNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNW-KSLAHLTPLSLTYDI 684
V + A ET+KF LV E+ DP E+I + K W K++ P +D+
Sbjct: 242 HRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDE-LKTWPKNIEVWNP---AFDV 297
Query: 685 TPSHLVTAVITELAIVPCTSVPVVLR 710
TP V +ITE I+P + +LR
Sbjct: 298 TPPEYVDVIITERGIIPPYAAIDILR 323
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 133/266 (50%), Gaps = 11/266 (4%)
Query: 448 FEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDT-QARLRLKEVIATYIHE 506
F + + A L + RP +VS+ NA+++ + D Q R + +IH
Sbjct: 54 FWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHN 113
Query: 507 QVDMAGNAICMFFHNKLANDDVILTYGCSSLVE-KILLTAHEKGTKFRVIIVDGSPWYEG 565
+ A I F ++ + DVI+T+ C S ++ TA E+G +VI+ + P ++G
Sbjct: 114 S-EKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQG 172
Query: 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA 625
K + L + + YV+ SA + M+ KV++GA ++ NGAV+++ GTA ++L A+
Sbjct: 173 KITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKE 232
Query: 626 FNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNW-KSLAHLTPLSLTYDI 684
V + A ET+KF LV E+ DP E+I + K W K++ P +D+
Sbjct: 233 HRVWTMIAAETYKFHPETM---LVEIEMRDPTEVIPEDE-LKTWPKNIEVWNP---AFDV 285
Query: 685 TPSHLVTAVITELAIVPCTSVPVVLR 710
TP V +ITE I+P + +LR
Sbjct: 286 TPPEYVDVIITERGIIPPYAAIDILR 311
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 522 KLAND-DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCS 580
+L +D DVI+T+ SS V +I+ TA E+ +F+VI+ + SP YEG + R L ++
Sbjct: 105 QLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIEFE 164
Query: 581 YVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFC 640
+ + + RE S I+GA + +G V+++AGT ++L +P A ET+KF
Sbjct: 165 VITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKFH 224
Query: 641 ERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIV 700
+++ ++ E +LI +N + +D+TP V +ITEL IV
Sbjct: 225 PTLKSGDVMLME----RDLIRGNVRIRN-----------VLFDVTPWKYVRGIITELGIV 269
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%)
Query: 507 QVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK 566
++ ++ N I H + + ILT+ S +V ++L A +F V + + P GK
Sbjct: 103 RISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGK 162
Query: 567 EMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAF 626
+ + L V + VL +AV YI + VI+GA ++ NG ++++ GT Q ++ A+A
Sbjct: 163 KXAKALCHLNVPVTVVLDAAVGYIXEKADLVIVGAEGVVENGGIINKIGTNQXAVCAKAQ 222
Query: 627 NVPVLAACETHKF 639
N P E+ KF
Sbjct: 223 NKPFYVVAESFKF 235
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 29/321 (9%)
Query: 391 LSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEE 450
L +T +V AI L V RG+ A + + D T + E+ R
Sbjct: 54 LELTTKEDVFDAIVTLKV-------RGAPAIGITAAFGLALAAKDIETDNVTEFRR---- 102
Query: 451 RLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRL-KEVIATYIHEQVD 509
RL YLN RP ++++ A++ SH + N I+ +A+ L E I + ++
Sbjct: 103 RLEDIKQYLNSSRPTAINLSWALERL-SH--SVENAISVNEAKTNLVHEAIQIQVEDEET 159
Query: 510 ---MAGNAICMFFHNK----LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPW 562
+ NA+ +F + N I T + + L A +K + + P
Sbjct: 160 CRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYL-AKQKDLGLHIYACETRPV 218
Query: 563 YEGKEM-LRRLVKHQVDCSYVLLSAVSYIMRE--VSKVIIGAHALLSNGAVMSRAGTAQV 619
+G + L++ +D + + S ++ M+E +S VI+GA + NG ++ GT +
Sbjct: 219 LQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGL 278
Query: 620 SLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLS 679
+++A AF++P A F +V+ A + E DP E+ ++ P
Sbjct: 279 AILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRTAPSNVPVFNP-- 336
Query: 680 LTYDITPSHLVTAVITELAIV 700
+DITP L++ +ITE I+
Sbjct: 337 -AFDITPHDLISGIITEKGIM 356
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 166/363 (45%), Gaps = 54/363 (14%)
Query: 373 GTTLVHKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQM 432
G L+ + KL L + + E+ AI +L V+ A + + A +AL +
Sbjct: 11 GLKLIDQTKLPEKL--EVIECRNVEELADAIKKLAVRGAPAL-EAAGAYGIALAA----- 62
Query: 433 VCDYTTPSEKEYSR--GFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDT 490
E+E++ +E L A +L RP +V++ ++ ++ L + +
Sbjct: 63 -------REREFADVDELKEHLKKAADFLASTRPTAVNLFVGIE--RALNAALKGESVEE 113
Query: 491 QARLRLKEVIATYIHEQVDMAGNAICMFFHNKLAND-DVILTY---GCSSLVE-----KI 541
L L+E A + E+ D+ N + +L D DV+LTY G + V+ +
Sbjct: 114 VKELALRE--AEKLAEE-DVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGV 170
Query: 542 LLTAHEKGTKFRVIIVDGSPWYEGKEML-RRLVKHQVDCSYVLLSAVSYIMRE--VSKVI 598
+ +A E+G + RVI + P +G + L++ +D + + S V +M++ V KVI
Sbjct: 171 VRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVI 230
Query: 599 IGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKF-CERVQTDALVFNELGDPN 657
+GA ++ + AV ++ GT VS+VA+ N+P A F ER D ++ E
Sbjct: 231 VGADRIVRD-AVFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWERTAKDVVI--EERPRE 287
Query: 658 ELISDKSAAKNWKSLAHLTPLSL-----TYDITPSHLVTAVITELAIV--PC-TSVPVVL 709
ELI + + PL++ +D TP VTA+ITE ++ P +VP VL
Sbjct: 288 ELI--------FCGKRQIAPLNVKVYNPAFDPTPLENVTALITEYGVIYPPYEVNVPKVL 339
Query: 710 RVK 712
+ +
Sbjct: 340 KFE 342
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 154/368 (41%), Gaps = 39/368 (10%)
Query: 365 VDGVKATPGTT-LVHKVKL-FNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARC 422
++ +K TPG+ L+ + KL ++ D L+V ++ AI V RG+ A
Sbjct: 18 LESIKYTPGSLRLLDQRKLPLETVFDDVLTV---EDIWSAIKEXRV-------RGAPAIA 67
Query: 423 VALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQ 482
V+ I E + R + L + ++ RP +V++ N ++ K+ + +
Sbjct: 68 VSAALGIAVATQRKAANGELKSGREVQTFLLTSCDFVXTSRPTAVNLFNCLRDLKAQVDK 127
Query: 483 L-PNDITD--TQARLRLKEVIAT---YIHEQVDMAGNAICMFFHNKLANDDV-ILT---- 531
L P QA + L E + T +E + G A + D V ILT
Sbjct: 128 LDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIXRHGAAHILAAAKAEGRDKVSILTICNT 187
Query: 532 -------YGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEM-LRRLVKHQVDCSYVL 583
YG + V + L G RV + PW +G + + V+ + C+ +
Sbjct: 188 GALATSRYGTALGVVRQLFY---DGKLERVYACETRPWNQGARLTVYECVQEDIPCTLIC 244
Query: 584 LSAVSYIM--REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCE 641
A S + R++ V++GA + NG ++ GT +++ A+ V + A T
Sbjct: 245 DGAASSLXLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDV 304
Query: 642 RVQTDALVFNELGDPNELISDKSAAKNWKSLA-HLTPLSLTYDITPSHLVT-AVITELAI 699
+ + V E +P E+ ++ + + HL+ + +DITPS L+T +ITE +
Sbjct: 305 KTASGNHVEIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPSELITGGIITEKGV 364
Query: 700 -VPCTSVP 706
P S P
Sbjct: 365 QAPAASAP 372
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 126/302 (41%), Gaps = 33/302 (10%)
Query: 414 VVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAV 473
+VRG+ A VA + DY T S ++ + +E L + RP +V++ A
Sbjct: 48 IVRGAPAIGVAAAFGYVLGLRDYKTGSLTDWXKQVKETLA-------RTRPTAVNLFWA- 99
Query: 474 KHFKSHLTQLPNDITDTQARLRLKEVIAT----YIHEQVDMAGNAICMFFHNKLANDDVI 529
L + + R L E++ +E +++ AI + + I
Sbjct: 100 ------LNRXEKVFFENADRENLFEILENEALKXAYEDIEV-NKAIGKNGAQLIKDGSTI 152
Query: 530 LTY---GCSSLVE-----KILLTAHEKGTKFRVIIVDGSPWYEGKEM-LRRLVKHQVDCS 580
LT+ G + V+ ++ A E G + RV + P+ +G + L K ++
Sbjct: 153 LTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELXKDGIEVY 212
Query: 581 YVLLSAVSYIMRE--VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHK 638
+ + ++ + + V++GA + NG ++ GT ++++A+ N+P A
Sbjct: 213 VITDNXAGWLXKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVST 272
Query: 639 FCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELA 698
+++ + E P E+ N + + L+ +D+T + L+TA+ITE
Sbjct: 273 IDPTIRSGEEIPIEERRPEEV---THCGGNRIAPEGVKVLNPAFDVTENTLITAIITEKG 329
Query: 699 IV 700
++
Sbjct: 330 VI 331
>pdb|1W2W|B Chain B, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|F Chain F, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|J Chain J, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|N Chain N, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
Length = 191
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 26/168 (15%)
Query: 554 VIIVDGSPWYEGKEMLR-RLVKHQVDCSYVLLSAVSYIMRE----VSKVIIGAHALLSNG 608
V ++ P+ +G + LV ++ + + S+++Y +R + +GA ++ NG
Sbjct: 7 VFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNG 66
Query: 609 AVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNE---------- 658
++ GT Q++++ + F + +T + E +P E
Sbjct: 67 DTANKIGTLQLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVIN 126
Query: 659 -----LISDKSAAKNWKSLAHLTPLSL-----TYDITPSHLVTAVITE 696
LI ++S + + PL + +DITP L+ +ITE
Sbjct: 127 PENGSLILNESGEPITGKVG-IAPLEINVWNPAFDITPHELIDGIITE 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,326,664
Number of Sequences: 62578
Number of extensions: 680930
Number of successful extensions: 1194
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 15
length of query: 717
length of database: 14,973,337
effective HSP length: 106
effective length of query: 611
effective length of database: 8,340,069
effective search space: 5095782159
effective search space used: 5095782159
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)