Query psy17541
Match_columns 717
No_of_seqs 267 out of 1339
Neff 4.4
Searched_HMMs 46136
Date Sat Aug 17 01:11:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1467|consensus 100.0 2E-106 4E-111 870.2 33.8 526 170-715 7-554 (556)
2 PRK08535 translation initiatio 100.0 2.4E-70 5.1E-75 577.2 31.5 302 398-712 2-303 (310)
3 TIGR00511 ribulose_e2b2 ribose 100.0 1.2E-68 2.7E-73 562.2 31.8 297 403-712 2-298 (301)
4 COG1184 GCD2 Translation initi 100.0 1.6E-68 3.4E-73 558.0 29.8 299 398-712 1-299 (301)
5 PF01008 IF-2B: Initiation fac 100.0 8.3E-67 1.8E-71 538.1 25.2 281 414-702 1-282 (282)
6 TIGR00524 eIF-2B_rel eIF-2B al 100.0 1E-65 2.3E-70 540.7 31.3 289 403-702 4-303 (303)
7 PRK05720 mtnA methylthioribose 100.0 1E-63 2.2E-68 533.1 31.4 295 402-708 32-337 (344)
8 TIGR00512 salvage_mtnA S-methy 100.0 2.7E-63 5.9E-68 527.1 30.7 288 402-702 29-331 (331)
9 PRK08335 translation initiatio 100.0 2.8E-61 6.2E-66 500.7 30.8 271 400-704 3-273 (275)
10 PRK05772 translation initiatio 100.0 1.2E-60 2.6E-65 511.4 31.1 293 403-704 46-353 (363)
11 PRK06036 translation initiatio 100.0 3.1E-60 6.7E-65 505.2 30.1 291 402-705 32-333 (339)
12 PRK08334 translation initiatio 100.0 6E-59 1.3E-63 496.7 32.3 294 402-706 43-347 (356)
13 PRK06371 translation initiatio 100.0 6.2E-58 1.3E-62 485.3 28.1 274 403-707 42-326 (329)
14 COG0182 Predicted translation 100.0 1.7E-55 3.7E-60 459.5 27.2 294 401-704 32-336 (346)
15 KOG1466|consensus 100.0 7.4E-55 1.6E-59 442.9 22.6 280 418-709 26-308 (313)
16 KOG1465|consensus 100.0 4.6E-54 1E-58 444.2 28.8 307 397-712 5-345 (353)
17 PRK06372 translation initiatio 100.0 5.7E-52 1.2E-56 426.6 23.2 249 409-707 5-253 (253)
18 KOG1468|consensus 100.0 2.8E-46 6.1E-51 382.6 21.2 292 407-705 37-345 (354)
19 PRK10434 srlR DNA-bindng trans 97.7 0.0003 6.6E-09 73.4 11.5 123 511-642 77-214 (256)
20 PRK00702 ribose-5-phosphate is 97.6 0.00066 1.4E-08 70.1 12.5 120 511-643 6-128 (220)
21 TIGR00021 rpiA ribose 5-phosph 97.5 0.001 2.2E-08 68.7 12.6 118 513-643 3-124 (218)
22 cd01398 RPI_A RPI_A: Ribose 5- 97.4 0.0011 2.5E-08 67.7 11.5 118 512-643 2-124 (213)
23 PRK13509 transcriptional repre 97.3 0.0014 2.9E-08 68.4 10.6 121 511-642 79-213 (251)
24 PF00455 DeoRC: DeoR C termina 97.3 0.0019 4.1E-08 63.1 10.8 123 511-642 5-142 (161)
25 PRK09802 DNA-binding transcrip 97.3 0.0056 1.2E-07 64.6 14.3 123 511-642 92-229 (269)
26 PRK10906 DNA-binding transcrip 97.1 0.0052 1.1E-07 64.3 12.3 123 511-642 77-214 (252)
27 PRK10411 DNA-binding transcrip 97.0 0.012 2.7E-07 61.1 13.8 121 511-641 79-214 (240)
28 COG1349 GlpR Transcriptional r 96.8 0.011 2.3E-07 62.0 11.1 122 511-642 77-214 (253)
29 PRK10681 DNA-binding transcrip 96.3 0.067 1.5E-06 55.9 13.1 122 511-641 78-214 (252)
30 PLN02384 ribose-5-phosphate is 95.0 0.38 8.2E-06 51.5 13.1 119 512-643 36-159 (264)
31 PRK13978 ribose-5-phosphate is 94.0 0.67 1.5E-05 48.6 12.0 119 512-643 8-130 (228)
32 KOG0259|consensus 92.0 1.1 2.4E-05 50.3 10.6 116 510-632 107-237 (447)
33 COG0120 RpiA Ribose 5-phosphat 88.6 5.7 0.00012 41.9 11.8 118 512-643 7-128 (227)
34 PF02254 TrkA_N: TrkA-N domain 88.3 2 4.3E-05 38.6 7.4 95 529-639 1-101 (116)
35 COG2057 AtoA Acyl CoA:acetate/ 87.8 1.1 2.3E-05 47.1 5.9 158 511-705 7-186 (225)
36 TIGR00474 selA seryl-tRNA(sec) 87.8 22 0.00049 40.8 17.0 112 519-634 131-252 (454)
37 COG0426 FpaA Uncharacterized f 86.5 10 0.00022 43.0 12.9 144 495-641 183-343 (388)
38 PF01073 3Beta_HSD: 3-beta hyd 82.0 3.3 7.1E-05 43.9 6.6 105 532-639 3-119 (280)
39 cd00293 USP_Like Usp: Universa 81.9 18 0.00039 31.3 10.2 92 538-633 16-130 (130)
40 TIGR01437 selA_rel uncharacter 81.8 18 0.00038 39.7 12.3 136 488-632 25-184 (363)
41 PRK04311 selenocysteine syntha 80.9 53 0.0011 37.9 16.1 112 519-634 136-257 (464)
42 cd01989 STK_N The N-terminal d 78.8 21 0.00045 33.0 10.1 60 572-634 74-144 (146)
43 cd00532 MGS-like MGS-like doma 78.3 23 0.00049 32.6 10.0 78 549-639 23-111 (112)
44 TIGR03235 DNA_S_dndA cysteine 78.3 32 0.00069 36.8 12.6 103 525-632 59-173 (353)
45 PRK01438 murD UDP-N-acetylmura 77.9 11 0.00023 42.7 9.3 72 525-601 15-86 (480)
46 PLN02651 cysteine desulfurase 76.7 43 0.00093 36.2 13.1 114 511-632 48-173 (364)
47 cd01424 MGS_CPS_II Methylglyox 76.5 23 0.0005 32.2 9.5 94 526-635 1-103 (110)
48 PRK14106 murD UDP-N-acetylmura 76.4 18 0.00039 40.3 10.5 94 525-632 4-97 (450)
49 PRK11557 putative DNA-binding 75.7 44 0.00095 35.0 12.5 54 563-616 189-244 (278)
50 TIGR01140 L_thr_O3P_dcar L-thr 75.3 21 0.00046 38.1 10.3 101 523-632 62-163 (330)
51 PRK10886 DnaA initiator-associ 75.3 85 0.0018 32.2 14.1 39 591-636 107-145 (196)
52 TIGR00273 iron-sulfur cluster- 74.9 38 0.00082 38.8 12.6 50 593-643 181-231 (432)
53 TIGR03402 FeS_nifS cysteine de 74.8 49 0.0011 35.8 13.0 102 525-632 59-171 (379)
54 PRK00025 lpxB lipid-A-disaccha 74.6 35 0.00077 36.6 11.8 94 527-637 187-290 (380)
55 KOG3075|consensus 74.3 21 0.00045 38.5 9.6 120 511-641 27-150 (261)
56 PRK08134 O-acetylhomoserine am 74.2 40 0.00086 38.3 12.6 99 527-632 81-184 (433)
57 TIGR01470 cysG_Nterm siroheme 73.0 27 0.00058 35.8 9.9 95 525-636 8-103 (205)
58 PRK01710 murD UDP-N-acetylmura 72.3 28 0.00061 39.4 10.8 93 526-632 14-106 (458)
59 TIGR02326 transamin_PhnW 2-ami 72.1 58 0.0012 35.0 12.7 99 528-633 57-165 (363)
60 PRK07582 cystathionine gamma-l 72.0 41 0.00088 37.0 11.7 99 525-632 65-167 (366)
61 PRK09496 trkA potassium transp 71.7 37 0.00081 37.7 11.4 61 521-583 200-261 (453)
62 PF02142 MGS: MGS-like domain 71.7 9.7 0.00021 34.0 5.6 77 540-631 4-94 (95)
63 cd06451 AGAT_like Alanine-glyo 71.3 61 0.0013 34.5 12.5 100 526-633 50-160 (356)
64 PRK12475 thiamine/molybdopteri 71.1 32 0.0007 38.0 10.6 110 514-634 13-148 (338)
65 PF03853 YjeF_N: YjeF-related 71.0 58 0.0013 32.2 11.4 122 508-632 5-136 (169)
66 PRK05839 hypothetical protein; 71.0 42 0.00091 36.6 11.5 105 523-632 81-193 (374)
67 cd01423 MGS_CPS_I_III Methylgl 70.9 20 0.00043 33.0 7.6 87 528-632 3-106 (116)
68 PTZ00433 tyrosine aminotransfe 70.7 39 0.00085 37.4 11.3 103 523-632 102-215 (412)
69 PRK08248 O-acetylhomoserine am 70.6 35 0.00075 38.7 11.0 98 527-633 81-185 (431)
70 PRK15116 sulfur acceptor prote 70.5 57 0.0012 35.2 12.0 118 513-641 18-161 (268)
71 PRK09331 Sep-tRNA:Cys-tRNA syn 70.5 29 0.00064 38.1 10.2 93 526-632 79-193 (387)
72 PRK05973 replicative DNA helic 70.3 44 0.00096 35.3 11.0 114 523-640 61-196 (237)
73 PRK07810 O-succinylhomoserine 70.2 61 0.0013 36.4 12.7 98 527-632 87-190 (403)
74 cd01988 Na_H_Antiporter_C The 70.1 66 0.0014 28.6 10.7 61 570-633 63-131 (132)
75 cd06454 KBL_like KBL_like; thi 69.9 54 0.0012 34.5 11.7 103 521-632 57-167 (349)
76 TIGR02006 IscS cysteine desulf 69.7 77 0.0017 34.9 13.2 117 509-632 50-177 (402)
77 PRK08133 O-succinylhomoserine 69.7 66 0.0014 35.8 12.8 98 527-632 78-181 (390)
78 TIGR01979 sufS cysteine desulf 69.5 75 0.0016 34.6 13.0 104 526-633 81-195 (403)
79 TIGR03392 FeS_syn_CsdA cystein 69.5 67 0.0015 35.0 12.6 117 507-632 61-192 (398)
80 COG1737 RpiR Transcriptional r 68.8 1.2E+02 0.0026 32.4 14.1 114 490-603 94-231 (281)
81 PF00535 Glycos_transf_2: Glyc 68.6 24 0.00052 31.7 7.6 81 528-608 3-94 (169)
82 PRK10892 D-arabinose 5-phospha 67.9 1.2E+02 0.0025 32.7 13.9 63 568-637 65-131 (326)
83 TIGR02428 pcaJ_scoB_fam 3-oxoa 67.1 23 0.00051 36.5 8.0 93 512-611 3-112 (207)
84 PRK07568 aspartate aminotransf 66.7 59 0.0013 35.3 11.5 103 523-632 86-200 (397)
85 PRK11337 DNA-binding transcrip 66.7 1E+02 0.0022 32.6 12.9 46 556-601 194-239 (292)
86 PRK13520 L-tyrosine decarboxyl 66.6 88 0.0019 33.4 12.6 101 525-632 76-186 (371)
87 PRK15118 universal stress glob 66.2 48 0.001 30.7 9.3 36 593-634 103-138 (144)
88 PF02844 GARS_N: Phosphoribosy 66.0 23 0.0005 33.0 6.9 86 528-631 2-90 (100)
89 PRK07865 N-succinyldiaminopime 65.9 34 0.00074 36.9 9.4 95 523-632 84-186 (364)
90 PRK06702 O-acetylhomoserine am 65.4 81 0.0018 36.1 12.6 99 527-632 78-182 (432)
91 KOG1467|consensus 65.0 12 0.00026 43.5 5.8 29 190-218 117-145 (556)
92 PRK05613 O-acetylhomoserine am 64.8 71 0.0015 36.5 12.0 99 527-632 86-190 (437)
93 CHL00144 odpB pyruvate dehydro 64.6 23 0.00051 38.8 7.9 90 523-641 198-299 (327)
94 PLN02656 tyrosine transaminase 64.4 88 0.0019 34.7 12.4 97 523-632 94-207 (409)
95 COG3109 ProQ Activator of osmo 64.3 10 0.00022 38.8 4.5 27 296-322 101-127 (208)
96 PRK08056 threonine-phosphate d 64.2 68 0.0015 34.7 11.3 94 523-632 70-180 (356)
97 cd00287 ribokinase_pfkB_like r 64.0 21 0.00046 34.2 6.7 69 549-634 23-91 (196)
98 PF10087 DUF2325: Uncharacteri 64.0 36 0.00079 30.5 7.7 72 554-633 2-81 (97)
99 PF01488 Shikimate_DH: Shikima 63.7 35 0.00077 32.3 8.0 72 525-600 11-82 (135)
100 TIGR01326 OAH_OAS_sulfhy OAH/O 63.6 64 0.0014 36.2 11.3 97 527-632 74-177 (418)
101 PRK10874 cysteine sulfinate de 63.6 1.4E+02 0.003 32.7 13.6 118 508-632 65-195 (401)
102 cd00614 CGS_like CGS_like: Cys 63.5 60 0.0013 35.6 10.8 97 527-632 57-160 (369)
103 PF00266 Aminotran_5: Aminotra 63.5 91 0.002 33.7 12.1 113 510-632 47-174 (371)
104 TIGR01329 cysta_beta_ly_E cyst 63.5 95 0.0021 34.4 12.4 99 527-633 64-167 (378)
105 PRK14012 cysteine desulfurase; 63.3 1.5E+02 0.0032 32.7 13.8 101 527-632 68-179 (404)
106 PRK02947 hypothetical protein; 63.2 2E+02 0.0044 30.2 14.8 34 566-599 123-167 (246)
107 PRK05958 8-amino-7-oxononanoat 63.2 1.7E+02 0.0037 31.3 14.0 101 522-632 96-203 (385)
108 PF05368 NmrA: NmrA-like famil 62.9 37 0.00081 34.0 8.5 99 529-636 1-103 (233)
109 cd01987 USP_OKCHK USP domain i 62.9 99 0.0022 27.6 10.4 93 538-633 16-123 (124)
110 PRK05764 aspartate aminotransf 62.7 75 0.0016 34.5 11.3 103 523-632 89-202 (393)
111 COG4635 HemG Flavodoxin [Energ 62.4 11 0.00024 38.2 4.4 142 555-709 5-157 (175)
112 PRK13479 2-aminoethylphosphona 62.1 1.1E+02 0.0024 32.9 12.3 100 527-633 57-167 (368)
113 PRK11302 DNA-binding transcrip 61.8 1.7E+02 0.0036 30.6 13.3 60 569-635 147-210 (284)
114 PLN02409 serine--glyoxylate am 61.7 60 0.0013 35.9 10.6 98 527-632 61-174 (401)
115 PLN00145 tyrosine/nicotianamin 61.7 67 0.0015 36.1 11.0 103 523-632 115-228 (430)
116 TIGR01977 am_tr_V_EF2568 cyste 61.2 1.9E+02 0.0041 31.0 14.0 98 527-632 64-172 (376)
117 TIGR03539 DapC_actino succinyl 61.2 49 0.0011 35.8 9.5 94 523-632 78-180 (357)
118 PRK05234 mgsA methylglyoxal sy 60.9 42 0.00092 32.8 8.1 89 538-637 19-116 (142)
119 PRK08574 cystathionine gamma-s 60.6 1E+02 0.0022 34.3 12.1 97 527-632 70-172 (385)
120 PRK14101 bifunctional glucokin 60.5 1.2E+02 0.0026 36.2 13.3 62 568-636 486-551 (638)
121 PRK03369 murD UDP-N-acetylmura 60.5 49 0.0011 38.0 9.8 91 523-632 9-99 (488)
122 cd06453 SufS_like Cysteine des 60.3 1.5E+02 0.0032 31.9 12.9 101 527-633 63-175 (373)
123 TIGR03537 DapC succinyldiamino 59.9 86 0.0019 33.7 11.1 99 523-632 57-174 (350)
124 cd05005 SIS_PHI Hexulose-6-pho 59.6 1.1E+02 0.0025 29.9 11.0 35 566-600 92-126 (179)
125 PRK12454 carbamate kinase-like 59.3 92 0.002 34.5 11.2 50 584-633 175-232 (313)
126 PRK15482 transcriptional regul 59.2 1.3E+02 0.0027 31.9 12.0 38 564-601 197-234 (285)
127 TIGR01325 O_suc_HS_sulf O-succ 59.1 1.4E+02 0.0029 33.1 12.6 97 527-632 71-174 (380)
128 TIGR01976 am_tr_V_VC1184 cyste 58.8 2.7E+02 0.0058 30.2 15.5 76 552-632 105-191 (397)
129 PLN02683 pyruvate dehydrogenas 58.6 40 0.00086 37.6 8.4 86 521-635 223-320 (356)
130 PRK09295 bifunctional cysteine 58.5 1.4E+02 0.003 32.9 12.5 117 509-632 70-199 (406)
131 cd06436 GlcNAc-1-P_transferase 58.5 29 0.00064 33.8 6.7 43 528-570 2-44 (191)
132 PRK06836 aspartate aminotransf 58.4 1E+02 0.0022 33.8 11.6 103 523-632 94-212 (394)
133 PRK05968 hypothetical protein; 58.0 1.5E+02 0.0032 33.1 12.7 98 527-632 80-182 (389)
134 PLN03209 translocon at the inn 58.0 35 0.00077 40.6 8.3 112 523-637 77-209 (576)
135 cd00609 AAT_like Aspartate ami 57.9 58 0.0012 33.7 9.1 102 525-633 59-171 (350)
136 TIGR03538 DapC_gpp succinyldia 57.6 99 0.0021 33.8 11.2 100 527-631 92-202 (393)
137 PRK09932 glycerate kinase II; 57.4 12 0.00027 42.1 4.3 53 586-640 277-329 (381)
138 cd00611 PSAT_like Phosphoserin 57.1 1.5E+02 0.0031 32.4 12.3 110 508-632 46-168 (355)
139 TIGR03576 pyridox_MJ0158 pyrid 56.9 3E+02 0.0065 30.2 15.3 133 489-632 35-173 (346)
140 PRK05678 succinyl-CoA syntheta 56.9 71 0.0015 34.8 9.8 103 527-631 67-173 (291)
141 PRK06234 methionine gamma-lyas 56.9 1E+02 0.0022 34.4 11.3 98 527-632 81-186 (400)
142 cd01494 AAT_I Aspartate aminot 56.8 1.6E+02 0.0034 26.9 11.3 100 524-632 16-127 (170)
143 PLN00143 tyrosine/nicotianamin 56.3 2E+02 0.0043 32.0 13.4 108 511-632 79-208 (409)
144 PLN02187 rooty/superroot1 56.3 1.3E+02 0.0027 34.4 12.1 103 523-632 129-242 (462)
145 TIGR03127 RuMP_HxlB 6-phospho 56.3 1.4E+02 0.003 29.2 10.9 36 566-601 89-124 (179)
146 PLN02206 UDP-glucuronate decar 56.1 49 0.0011 37.6 8.8 109 525-637 118-235 (442)
147 PRK07812 O-acetylhomoserine am 56.1 1.1E+02 0.0024 35.0 11.6 99 528-634 87-192 (436)
148 PLN02828 formyltetrahydrofolat 56.0 82 0.0018 34.1 10.0 72 528-600 74-154 (268)
149 cd03466 Nitrogenase_NifN_2 Nit 55.8 3.2E+02 0.0069 31.0 15.1 96 525-634 299-397 (429)
150 CHL00194 ycf39 Ycf39; Provisio 55.6 82 0.0018 33.4 9.9 102 528-636 2-110 (317)
151 PRK09028 cystathionine beta-ly 55.5 1.2E+02 0.0026 34.2 11.7 94 527-632 78-181 (394)
152 cd01483 E1_enzyme_family Super 55.5 60 0.0013 30.5 8.0 99 528-636 1-123 (143)
153 PRK07309 aromatic amino acid a 55.1 1.3E+02 0.0028 33.1 11.6 100 526-632 92-204 (391)
154 cd00757 ThiF_MoeB_HesA_family 55.1 56 0.0012 33.7 8.3 109 515-634 11-143 (228)
155 cd06450 DOPA_deC_like DOPA dec 54.9 2.3E+02 0.0051 29.8 13.2 100 526-632 58-183 (345)
156 cd01491 Ube1_repeat1 Ubiquitin 54.2 79 0.0017 34.4 9.6 109 515-634 9-137 (286)
157 cd04235 AAK_CK AAK_CK: Carbama 53.9 1.8E+02 0.0039 32.2 12.3 50 585-634 172-229 (308)
158 PRK08861 cystathionine gamma-s 53.5 1.2E+02 0.0025 34.2 11.0 98 527-632 70-173 (388)
159 PRK06108 aspartate aminotransf 53.3 1.4E+02 0.0029 32.2 11.3 96 523-632 82-196 (382)
160 PRK06348 aspartate aminotransf 53.2 1.2E+02 0.0025 33.2 10.9 103 523-632 87-200 (384)
161 TIGR01019 sucCoAalpha succinyl 53.1 73 0.0016 34.7 9.1 103 527-631 65-171 (286)
162 PLN02778 3,5-epimerase/4-reduc 53.1 59 0.0013 34.5 8.4 26 611-636 86-111 (298)
163 PRK05690 molybdopterin biosynt 52.8 2.2E+02 0.0048 29.9 12.4 110 514-633 21-153 (245)
164 PRK07765 para-aminobenzoate sy 52.7 60 0.0013 33.4 8.1 82 553-640 2-89 (214)
165 PRK13938 phosphoheptose isomer 52.4 2.6E+02 0.0057 28.7 12.5 34 566-599 130-163 (196)
166 TIGR02356 adenyl_thiF thiazole 52.3 1.1E+02 0.0024 31.0 9.9 109 515-634 11-143 (202)
167 PRK02472 murD UDP-N-acetylmura 52.1 89 0.0019 34.9 9.9 92 525-631 4-96 (447)
168 PRK06225 aspartate aminotransf 52.1 1.2E+02 0.0026 33.0 10.7 103 523-632 81-195 (380)
169 smart00851 MGS MGS-like domain 52.0 1.1E+02 0.0025 26.7 8.7 70 550-631 12-89 (90)
170 PLN02855 Bifunctional selenocy 51.9 1.7E+02 0.0037 32.4 12.0 113 510-632 80-208 (424)
171 PRK07683 aminotransferase A; V 51.8 1.3E+02 0.0028 33.0 10.9 100 527-632 91-199 (387)
172 PLN02260 probable rhamnose bio 51.8 60 0.0013 38.5 8.9 88 551-639 380-485 (668)
173 PF01408 GFO_IDH_MocA: Oxidore 51.6 1.8E+02 0.0039 26.0 10.4 87 528-632 2-91 (120)
174 PF05159 Capsule_synth: Capsul 51.5 74 0.0016 33.2 8.7 85 536-637 140-228 (269)
175 PF00148 Oxidored_nitro: Nitro 51.5 3.7E+02 0.0081 29.6 15.6 109 509-635 256-367 (398)
176 PRK13527 glutamine amidotransf 51.3 35 0.00075 34.4 6.0 84 551-639 2-89 (200)
177 PRK02705 murD UDP-N-acetylmura 51.0 88 0.0019 35.1 9.7 91 529-631 3-96 (459)
178 PRK15005 universal stress prot 50.7 43 0.00093 30.8 6.1 36 593-633 107-143 (144)
179 PRK08175 aminotransferase; Val 50.5 43 0.00093 36.7 7.0 103 523-632 88-202 (395)
180 TIGR03590 PseG pseudaminic aci 49.9 1.6E+02 0.0035 31.2 11.0 91 527-635 172-268 (279)
181 PRK09136 5'-methylthioadenosin 49.8 55 0.0012 34.7 7.4 76 529-636 126-205 (245)
182 PTZ00187 succinyl-CoA syntheta 49.8 63 0.0014 35.8 8.1 102 526-631 89-197 (317)
183 PRK05443 polyphosphate kinase; 49.7 45 0.00096 40.6 7.5 52 533-584 377-430 (691)
184 cd01972 Nitrogenase_VnfE_like 49.7 3.4E+02 0.0073 30.7 14.0 117 501-633 270-399 (426)
185 PF13241 NAD_binding_7: Putati 49.6 38 0.00083 30.6 5.4 87 525-634 6-92 (103)
186 PTZ00182 3-methyl-2-oxobutanat 49.5 1.1E+02 0.0024 34.2 10.0 90 523-641 230-331 (355)
187 TIGR00045 glycerate kinase. Th 49.4 18 0.00039 40.8 3.9 53 586-640 276-328 (375)
188 PRK11892 pyruvate dehydrogenas 49.3 72 0.0016 37.0 8.8 69 567-640 357-437 (464)
189 PRK06084 O-acetylhomoserine am 49.2 1.3E+02 0.0028 34.1 10.7 97 527-632 75-178 (425)
190 PRK09147 succinyldiaminopimela 49.1 1.6E+02 0.0034 32.3 11.1 94 527-632 92-204 (396)
191 TIGR00853 pts-lac PTS system, 48.7 82 0.0018 28.6 7.4 58 569-635 24-83 (95)
192 PRK05957 aspartate aminotransf 48.7 1.8E+02 0.0038 32.0 11.4 93 526-632 90-198 (389)
193 PRK07503 methionine gamma-lyas 48.7 2.1E+02 0.0045 32.1 12.1 97 528-632 83-185 (403)
194 TIGR03499 FlhF flagellar biosy 48.6 3.7E+02 0.008 28.8 14.6 76 524-599 192-278 (282)
195 PRK08361 aspartate aminotransf 48.6 1.6E+02 0.0036 32.1 11.1 103 523-632 91-204 (391)
196 PRK07324 transaminase; Validat 48.6 1.1E+02 0.0023 33.6 9.6 103 523-632 78-191 (373)
197 TIGR01328 met_gam_lyase methio 48.4 2.1E+02 0.0045 31.9 12.0 97 528-632 77-179 (391)
198 PRK08249 cystathionine gamma-s 48.2 1.8E+02 0.0038 32.7 11.5 98 527-632 81-184 (398)
199 PRK08912 hypothetical protein; 48.2 2.1E+02 0.0046 31.2 11.9 92 527-632 89-197 (387)
200 PRK03803 murD UDP-N-acetylmura 48.1 91 0.002 35.0 9.3 91 524-631 4-96 (448)
201 COG0424 Maf Nucleotide-binding 48.0 52 0.0011 34.1 6.7 72 539-621 15-91 (193)
202 PRK05597 molybdopterin biosynt 48.0 1.3E+02 0.0028 33.5 10.2 109 515-634 18-150 (355)
203 PF08032 SpoU_sub_bind: RNA 2' 47.9 53 0.0012 27.4 5.7 53 540-592 6-59 (76)
204 cd05013 SIS_RpiR RpiR-like pro 47.9 2E+02 0.0043 25.8 9.9 64 567-637 30-97 (139)
205 PRK05939 hypothetical protein; 47.8 2E+02 0.0043 32.3 11.8 94 527-632 64-166 (397)
206 PF01113 DapB_N: Dihydrodipico 47.8 34 0.00074 32.0 5.0 96 528-637 2-101 (124)
207 PRK07681 aspartate aminotransf 47.7 1.4E+02 0.0031 32.7 10.5 102 523-632 90-204 (399)
208 TIGR01264 tyr_amTase_E tyrosin 47.6 1.4E+02 0.003 32.8 10.4 103 523-632 93-206 (401)
209 PRK07550 hypothetical protein; 47.2 1.8E+02 0.0038 31.8 11.1 102 523-632 88-201 (386)
210 cd08769 DAP_dppA_2 Peptidase M 46.6 34 0.00074 37.0 5.4 39 602-642 124-162 (270)
211 COG1929 Glycerate kinase [Carb 46.6 23 0.00049 39.9 4.1 53 586-640 277-329 (378)
212 PRK07050 cystathionine beta-ly 46.5 2.9E+02 0.0063 30.9 12.8 99 527-632 82-185 (394)
213 COG1104 NifS Cysteine sulfinat 46.4 83 0.0018 35.9 8.5 114 509-632 47-176 (386)
214 cd01974 Nitrogenase_MoFe_beta 46.4 4.9E+02 0.011 29.6 15.3 100 525-635 302-403 (435)
215 PLN02242 methionine gamma-lyas 46.3 1.8E+02 0.0039 33.0 11.2 99 527-632 93-198 (418)
216 PRK05967 cystathionine beta-ly 46.2 2E+02 0.0044 32.6 11.5 98 527-632 81-184 (395)
217 PRK14852 hypothetical protein; 46.2 2E+02 0.0043 36.7 12.3 139 486-635 296-457 (989)
218 PRK07811 cystathionine gamma-s 46.2 1.4E+02 0.003 33.3 10.2 91 535-633 86-182 (388)
219 PRK10342 glycerate kinase I; P 46.1 25 0.00054 39.8 4.4 53 586-640 277-329 (381)
220 TIGR01133 murG undecaprenyldip 46.0 1.9E+02 0.0041 30.4 10.8 91 527-634 180-277 (348)
221 cd08770 DAP_dppA_3 Peptidase M 45.4 35 0.00075 36.9 5.1 38 603-642 125-162 (263)
222 COG1091 RfbD dTDP-4-dehydrorha 45.2 68 0.0015 35.0 7.4 96 529-643 3-108 (281)
223 PRK07877 hypothetical protein; 44.9 1.8E+02 0.004 35.7 11.6 122 503-636 85-230 (722)
224 PRK08114 cystathionine beta-ly 44.9 1.2E+02 0.0027 34.3 9.6 101 522-632 73-184 (395)
225 PRK12771 putative glutamate sy 44.9 1.7E+02 0.0036 34.3 11.0 78 523-602 134-231 (564)
226 PRK07671 cystathionine beta-ly 44.5 2.4E+02 0.0052 31.3 11.7 90 531-632 70-169 (377)
227 COG0451 WcaG Nucleoside-diphos 44.4 53 0.0012 33.8 6.2 101 529-636 3-116 (314)
228 PRK08960 hypothetical protein; 44.4 1.6E+02 0.0034 32.2 10.2 96 523-632 90-203 (387)
229 TIGR02371 ala_DH_arch alanine 44.4 1.2E+02 0.0026 33.2 9.2 99 515-617 115-224 (325)
230 TIGR03458 YgfH_subfam succinat 44.2 1.5E+02 0.0033 34.6 10.4 123 517-642 6-162 (485)
231 PRK08045 cystathionine gamma-s 44.2 2.6E+02 0.0057 31.2 12.0 98 527-632 69-172 (386)
232 cd01973 Nitrogenase_VFe_beta_l 44.2 5.6E+02 0.012 29.6 15.4 116 512-637 292-410 (454)
233 TIGR03492 conserved hypothetic 43.9 2.2E+02 0.0048 31.9 11.4 91 526-634 205-322 (396)
234 PF00582 Usp: Universal stress 43.8 2.2E+02 0.0047 24.7 10.6 38 593-633 102-139 (140)
235 COG0074 SucD Succinyl-CoA synt 43.8 67 0.0014 35.3 7.0 101 527-631 67-173 (293)
236 KOG0781|consensus 43.7 76 0.0016 37.4 7.7 68 533-602 390-475 (587)
237 COG0552 FtsY Signal recognitio 43.4 5.1E+02 0.011 29.3 13.7 99 536-645 208-329 (340)
238 PRK08328 hypothetical protein; 43.3 2.3E+02 0.005 29.5 10.7 109 515-634 17-150 (231)
239 PRK10116 universal stress prot 43.1 2.2E+02 0.0047 26.1 9.5 36 593-633 102-137 (142)
240 PRK15456 universal stress prot 43.1 79 0.0017 29.3 6.7 37 593-633 105-141 (142)
241 PRK08644 thiamine biosynthesis 43.1 2.3E+02 0.0051 29.1 10.6 111 514-635 17-151 (212)
242 PRK08363 alanine aminotransfer 43.0 1.4E+02 0.0031 32.6 9.7 103 523-632 91-204 (398)
243 PRK05942 aspartate aminotransf 42.9 2E+02 0.0043 31.6 10.7 99 527-632 99-208 (394)
244 PRK07504 O-succinylhomoserine 42.7 2.9E+02 0.0062 30.9 12.0 96 529-632 84-185 (398)
245 PRK05749 3-deoxy-D-manno-octul 42.5 1.6E+02 0.0034 32.5 9.9 97 525-634 49-154 (425)
246 PRK07366 succinyldiaminopimela 42.3 2E+02 0.0044 31.3 10.7 98 527-631 94-202 (388)
247 PRK00726 murG undecaprenyldiph 42.1 2.4E+02 0.0053 30.0 11.0 93 527-636 184-281 (357)
248 PRK13143 hisH imidazole glycer 42.1 1E+02 0.0023 31.1 7.8 83 553-641 2-85 (200)
249 PF08484 Methyltransf_14: C-me 41.8 59 0.0013 32.3 5.8 66 500-567 43-108 (160)
250 PF01380 SIS: SIS domain SIS d 41.7 2.1E+02 0.0046 25.7 9.1 45 559-603 63-107 (131)
251 COG0707 MurG UDP-N-acetylgluco 41.6 2E+02 0.0044 32.1 10.6 97 525-638 182-283 (357)
252 PRK12414 putative aminotransfe 41.5 1.6E+02 0.0034 32.3 9.7 92 527-632 92-200 (384)
253 PRK09288 purT phosphoribosylgl 41.4 38 0.00082 37.0 4.9 76 523-604 8-86 (395)
254 PRK07878 molybdopterin biosynt 41.3 2.1E+02 0.0045 32.3 10.7 109 514-633 31-163 (392)
255 PRK08636 aspartate aminotransf 41.2 2.5E+02 0.0054 31.0 11.2 99 527-632 97-213 (403)
256 TIGR03403 nifS_epsilon cystein 41.0 4.4E+02 0.0096 28.6 12.9 102 525-632 60-175 (382)
257 PRK13937 phosphoheptose isomer 41.0 3.9E+02 0.0083 26.8 12.3 34 566-599 123-156 (188)
258 cd06433 GT_2_WfgS_like WfgS an 40.8 1.6E+02 0.0034 27.6 8.3 47 528-574 3-50 (202)
259 COG0771 MurD UDP-N-acetylmuram 40.7 92 0.002 36.1 7.9 91 526-631 7-97 (448)
260 TIGR01265 tyr_nico_aTase tyros 40.5 2.3E+02 0.0049 31.3 10.7 94 525-632 96-207 (403)
261 PRK07179 hypothetical protein; 40.4 3.2E+02 0.0069 30.1 11.9 107 521-638 110-221 (407)
262 PRK06207 aspartate aminotransf 40.4 3.1E+02 0.0068 30.4 11.9 100 526-632 103-216 (405)
263 cd02525 Succinoglycan_BP_ExoA 40.4 3.7E+02 0.0079 26.4 11.2 56 528-583 5-63 (249)
264 PRK13566 anthranilate synthase 40.4 1.2E+02 0.0025 37.3 9.0 83 548-637 523-608 (720)
265 PRK06767 methionine gamma-lyas 40.4 2.5E+02 0.0055 31.1 11.1 98 527-632 78-181 (386)
266 PRK07049 methionine gamma-lyas 40.3 2.2E+02 0.0048 32.3 10.8 55 526-584 99-155 (427)
267 PF08659 KR: KR domain; Inter 40.2 2.3E+02 0.0049 27.9 9.7 108 528-637 3-137 (181)
268 cd00615 Orn_deC_like Ornithine 40.1 3.3E+02 0.0071 28.8 11.5 96 527-633 76-189 (294)
269 TIGR01324 cysta_beta_ly_B cyst 40.1 3.3E+02 0.0072 30.4 12.0 94 527-632 67-170 (377)
270 PRK09212 pyruvate dehydrogenas 40.0 2E+02 0.0043 31.7 10.1 88 523-639 198-297 (327)
271 PRK10481 hypothetical protein; 39.9 1.7E+02 0.0036 31.0 9.0 87 540-632 120-211 (224)
272 PRK02006 murD UDP-N-acetylmura 39.8 1.6E+02 0.0035 33.7 9.7 95 526-631 7-101 (498)
273 TIGR02080 O_succ_thio_ly O-suc 39.8 3.3E+02 0.0072 30.3 11.9 98 527-632 68-171 (382)
274 PF05185 PRMT5: PRMT5 arginine 39.7 80 0.0017 36.4 7.3 71 526-598 187-263 (448)
275 PLN02214 cinnamoyl-CoA reducta 39.6 1.7E+02 0.0037 31.6 9.5 107 525-633 9-124 (342)
276 cd01980 Chlide_reductase_Y Chl 39.6 4E+02 0.0086 30.2 12.6 113 501-635 259-376 (416)
277 cd01492 Aos1_SUMO Ubiquitin ac 39.4 2.5E+02 0.0053 28.6 10.0 109 515-634 11-142 (197)
278 PRK06176 cystathionine gamma-s 39.3 3.5E+02 0.0076 30.1 12.0 96 528-632 68-169 (380)
279 PF04016 DUF364: Domain of unk 39.3 70 0.0015 31.3 5.8 99 523-645 8-106 (147)
280 TIGR03609 S_layer_CsaB polysac 39.3 85 0.0018 33.1 6.9 81 550-637 27-109 (298)
281 PRK00942 acetylglutamate kinas 39.3 1.7E+02 0.0038 31.1 9.3 106 527-633 57-201 (283)
282 TIGR01142 purT phosphoribosylg 39.2 75 0.0016 34.6 6.7 72 528-605 1-74 (380)
283 PRK14478 nitrogenase molybdenu 39.2 4.7E+02 0.01 30.3 13.3 115 498-633 298-417 (475)
284 COG0520 csdA Selenocysteine ly 39.2 4.9E+02 0.011 29.6 13.3 109 508-632 68-197 (405)
285 PRK12767 carbamoyl phosphate s 39.1 39 0.00084 35.8 4.4 40 528-568 3-42 (326)
286 PLN00175 aminotransferase fami 39.0 3.3E+02 0.0071 30.4 11.8 99 527-632 117-225 (413)
287 cd01493 APPBP1_RUB Ubiquitin a 39.0 2.8E+02 0.006 32.0 11.3 109 515-634 10-144 (425)
288 PF03709 OKR_DC_1_N: Orn/Lys/A 38.9 49 0.0011 30.8 4.5 67 566-637 7-77 (115)
289 PRK13936 phosphoheptose isomer 38.6 4.3E+02 0.0094 26.7 12.0 40 590-636 108-147 (197)
290 PRK06290 aspartate aminotransf 38.6 2.2E+02 0.0048 31.8 10.4 107 523-637 103-221 (410)
291 cd03807 GT1_WbnK_like This fam 38.6 2.6E+02 0.0057 28.1 10.1 94 528-633 195-298 (365)
292 PRK05562 precorrin-2 dehydroge 38.5 1.6E+02 0.0035 31.0 8.7 95 525-635 24-118 (223)
293 PLN02509 cystathionine beta-ly 38.5 2.9E+02 0.0062 32.1 11.4 92 528-632 151-252 (464)
294 TIGR00858 bioF 8-amino-7-oxono 38.4 3.8E+02 0.0083 28.2 11.7 93 527-632 78-181 (360)
295 PRK08247 cystathionine gamma-s 38.3 4E+02 0.0087 29.3 12.2 100 528-637 70-175 (366)
296 PLN02331 phosphoribosylglycina 38.2 1.6E+02 0.0034 30.6 8.5 73 528-604 3-90 (207)
297 cd00755 YgdL_like Family of ac 38.2 1.6E+02 0.0034 31.1 8.6 110 517-637 3-137 (231)
298 PF04392 ABC_sub_bind: ABC tra 38.2 32 0.0007 36.3 3.6 41 590-637 181-221 (294)
299 PTZ00075 Adenosylhomocysteinas 38.1 6.8E+02 0.015 29.5 14.3 84 523-618 251-344 (476)
300 TIGR01825 gly_Cac_T_rel pyrido 38.0 2.9E+02 0.0062 29.8 10.8 95 528-632 97-198 (385)
301 PRK00048 dihydrodipicolinate r 38.0 1.2E+02 0.0026 32.0 7.7 87 528-633 3-90 (257)
302 PRK06141 ornithine cyclodeamin 37.8 2.5E+02 0.0054 30.5 10.4 97 518-617 115-221 (314)
303 PRK05414 urocanate hydratase; 37.8 1.4E+02 0.0031 35.3 8.7 88 444-535 215-326 (556)
304 TIGR00639 PurN phosphoribosylg 37.6 1.7E+02 0.0037 29.8 8.5 69 528-599 4-85 (190)
305 TIGR01469 cobA_cysG_Cterm urop 37.5 1.4E+02 0.0029 30.5 7.9 55 538-593 66-123 (236)
306 cd03822 GT1_ecORF704_like This 37.3 2.7E+02 0.0059 28.4 10.1 101 525-633 184-299 (366)
307 cd06452 SepCysS Sep-tRNA:Cys-t 37.2 4.2E+02 0.0091 28.6 11.9 97 526-632 60-174 (361)
308 cd00613 GDC-P Glycine cleavage 37.0 5.2E+02 0.011 28.0 12.7 99 527-632 83-194 (398)
309 PRK12320 hypothetical protein; 37.0 88 0.0019 38.2 7.3 99 528-636 2-103 (699)
310 PRK05994 O-acetylhomoserine am 36.9 4.4E+02 0.0094 29.9 12.4 96 528-632 81-183 (427)
311 TIGR01584 citF citrate lyase, 36.9 1.6E+02 0.0035 34.6 9.0 159 511-712 231-439 (492)
312 TIGR01228 hutU urocanate hydra 36.8 1.5E+02 0.0033 35.0 8.8 88 444-535 206-317 (545)
313 PF13580 SIS_2: SIS domain; PD 36.8 88 0.0019 29.7 6.0 37 515-551 91-132 (138)
314 PRK06425 histidinol-phosphate 36.7 1.7E+02 0.0036 31.4 8.7 93 524-632 56-160 (332)
315 PLN02512 acetylglutamate kinas 36.7 2.5E+02 0.0053 30.7 10.1 106 527-633 81-225 (309)
316 COG0626 MetC Cystathionine bet 36.6 3.6E+02 0.0077 31.0 11.6 98 522-627 74-179 (396)
317 cd01748 GATase1_IGP_Synthase T 36.6 1E+02 0.0022 30.9 6.6 70 566-638 12-82 (198)
318 PRK04056 Maf-like protein; Rev 36.3 1.6E+02 0.0035 29.9 8.1 94 530-633 2-102 (180)
319 PRK04663 murD UDP-N-acetylmura 36.3 2.1E+02 0.0045 32.3 9.7 90 527-632 8-97 (438)
320 PRK06939 2-amino-3-ketobutyrat 36.2 1.3E+02 0.0028 32.4 7.8 96 527-637 105-213 (397)
321 cd00138 PLDc Phospholipase D. 36.2 1.5E+02 0.0032 28.3 7.5 51 535-585 52-107 (176)
322 PRK13111 trpA tryptophan synth 36.2 5E+02 0.011 27.8 12.1 105 527-633 92-206 (258)
323 PF00670 AdoHcyase_NAD: S-aden 36.2 2E+02 0.0044 29.1 8.6 68 520-599 17-84 (162)
324 TIGR02355 moeB molybdopterin s 36.1 2.8E+02 0.0061 29.1 10.1 108 516-634 15-146 (240)
325 COG0373 HemA Glutamyl-tRNA red 36.1 1.6E+02 0.0034 34.0 8.7 72 525-603 177-248 (414)
326 PRK08064 cystathionine beta-ly 35.9 3.5E+02 0.0075 30.2 11.3 97 527-632 71-173 (390)
327 cd04185 GT_2_like_b Subfamily 35.9 1.2E+02 0.0026 29.2 6.9 45 528-572 2-47 (202)
328 PRK04425 Maf-like protein; Rev 35.9 1.5E+02 0.0033 30.6 7.8 93 530-633 7-106 (196)
329 PRK14362 Maf-like protein; Pro 35.8 2.3E+02 0.005 29.5 9.2 92 530-632 14-113 (207)
330 PRK09082 methionine aminotrans 35.8 3.8E+02 0.0081 29.4 11.4 99 527-632 93-201 (386)
331 PRK05664 threonine-phosphate d 35.7 3.8E+02 0.0083 28.7 11.3 102 526-637 65-166 (330)
332 PRK14361 Maf-like protein; Pro 35.6 1.5E+02 0.0033 30.3 7.8 90 532-632 3-98 (187)
333 TIGR03301 PhnW-AepZ 2-aminoeth 35.5 5.5E+02 0.012 27.0 12.7 97 529-633 54-161 (355)
334 PRK13789 phosphoribosylamine-- 35.2 61 0.0013 36.8 5.4 76 527-608 5-83 (426)
335 COG0855 Ppk Polyphosphate kina 35.2 94 0.002 37.7 6.9 48 536-583 384-433 (696)
336 PRK09148 aminotransferase; Val 35.0 2.4E+02 0.0051 31.3 9.8 102 523-632 89-203 (405)
337 COG1648 CysG Siroheme synthase 35.0 1.7E+02 0.0036 30.5 8.1 96 525-636 11-106 (210)
338 PRK03244 argD acetylornithine 34.9 4.3E+02 0.0094 28.9 11.8 101 527-632 105-222 (398)
339 cd04249 AAK_NAGK-NC AAK_NAGK-N 34.6 5.5E+02 0.012 26.8 12.4 106 526-634 32-176 (252)
340 TIGR02429 pcaI_scoA_fam 3-oxoa 34.6 2.9E+02 0.0062 29.1 9.8 96 519-633 12-122 (222)
341 PF02595 Gly_kinase: Glycerate 34.6 26 0.00055 39.6 2.3 54 586-641 277-330 (377)
342 cd00956 Transaldolase_FSA Tran 34.4 2.3E+02 0.005 29.3 9.0 98 535-638 60-166 (211)
343 PLN02735 carbamoyl-phosphate s 34.4 2.4E+02 0.0053 36.2 10.9 95 526-635 973-1076(1102)
344 PRK15473 cbiF cobalt-precorrin 34.2 2.6E+02 0.0057 29.4 9.6 54 539-593 70-126 (257)
345 PRK12342 hypothetical protein; 34.2 1.8E+02 0.004 31.2 8.4 91 528-640 55-149 (254)
346 PRK07682 hypothetical protein; 34.2 4.5E+02 0.0098 28.5 11.7 100 526-632 82-192 (378)
347 PRK00207 sulfur transfer compl 34.2 79 0.0017 30.2 5.2 73 554-638 4-83 (128)
348 PRK07523 gluconate 5-dehydroge 34.2 2.3E+02 0.0051 28.5 8.9 108 525-636 9-146 (255)
349 cd04250 AAK_NAGK-C AAK_NAGK-C: 34.1 5.5E+02 0.012 27.3 12.0 104 527-633 48-197 (279)
350 PRK02948 cysteine desulfurase; 33.9 6.4E+02 0.014 27.3 15.7 117 509-632 46-173 (381)
351 PRK00141 murD UDP-N-acetylmura 33.9 2.1E+02 0.0047 32.7 9.5 93 525-635 14-106 (473)
352 PRK08776 cystathionine gamma-s 33.9 5.2E+02 0.011 29.2 12.3 98 527-632 77-180 (405)
353 PRK09257 aromatic amino acid a 33.8 4.5E+02 0.0099 28.8 11.7 98 529-632 98-210 (396)
354 PF01053 Cys_Met_Meta_PP: Cys/ 33.7 4.3E+02 0.0093 29.9 11.7 103 522-632 66-176 (386)
355 PRK06136 uroporphyrin-III C-me 33.6 1.8E+02 0.0039 30.0 8.1 53 540-593 71-126 (249)
356 cd03820 GT1_amsD_like This fam 33.6 4.2E+02 0.0091 26.4 10.5 97 525-633 177-282 (348)
357 PRK08762 molybdopterin biosynt 33.5 2.6E+02 0.0057 31.1 9.9 109 515-634 125-257 (376)
358 cd06502 TA_like Low-specificit 33.4 4.2E+02 0.009 27.8 11.0 102 525-632 47-164 (338)
359 PRK08068 transaminase; Reviewe 33.4 3.9E+02 0.0084 29.2 11.0 107 523-637 91-209 (389)
360 PRK06015 keto-hydroxyglutarate 33.3 1.6E+02 0.0035 30.5 7.6 77 556-632 9-102 (201)
361 PRK07688 thiamine/molybdopteri 33.2 4.7E+02 0.01 29.1 11.6 110 514-634 13-148 (339)
362 TIGR00172 maf MAF protein. Thi 33.2 1.8E+02 0.0039 29.6 7.8 91 531-632 6-103 (183)
363 PF00590 TP_methylase: Tetrapy 33.1 1.4E+02 0.0031 29.4 7.1 62 530-593 56-124 (210)
364 PLN02166 dTDP-glucose 4,6-dehy 33.0 1.9E+02 0.0042 32.9 8.9 107 526-636 120-235 (436)
365 PRK00421 murC UDP-N-acetylmura 33.0 2.1E+02 0.0045 32.5 9.2 90 525-633 6-96 (461)
366 PRK08462 biotin carboxylase; V 32.9 81 0.0018 35.5 5.9 80 527-608 5-91 (445)
367 PRK07340 ornithine cyclodeamin 32.9 3.2E+02 0.0069 29.6 10.2 98 515-617 112-219 (304)
368 PRK00414 gmhA phosphoheptose i 32.7 5.4E+02 0.012 26.0 13.2 34 566-599 128-161 (192)
369 PRK06091 membrane protein FdrA 32.6 2.9E+02 0.0062 33.1 10.3 136 490-631 75-221 (555)
370 cd04252 AAK_NAGK-fArgBP AAK_NA 32.5 3.2E+02 0.0069 28.7 9.8 106 527-635 30-172 (248)
371 PRK06460 hypothetical protein; 32.4 5.6E+02 0.012 28.4 12.2 57 571-632 104-165 (376)
372 cd05006 SIS_GmhA Phosphoheptos 32.4 4.9E+02 0.011 25.4 11.7 38 564-601 116-153 (177)
373 TIGR01963 PHB_DH 3-hydroxybuty 32.3 2.9E+02 0.0062 27.5 9.1 104 527-634 2-135 (255)
374 PRK08618 ornithine cyclodeamin 32.3 2.9E+02 0.0063 30.1 9.8 96 518-617 117-223 (325)
375 PRK13355 bifunctional HTH-doma 32.3 3.8E+02 0.0082 30.9 11.2 103 523-632 206-319 (517)
376 cd00640 Trp-synth-beta_II Tryp 32.3 3.7E+02 0.0081 27.5 10.1 57 525-585 49-105 (244)
377 TIGR01814 kynureninase kynuren 32.3 4.7E+02 0.01 28.9 11.6 103 525-632 86-206 (406)
378 PRK09191 two-component respons 32.3 3.8E+02 0.0082 27.0 10.1 93 536-635 119-218 (261)
379 cd04187 DPM1_like_bac Bacteria 32.2 3.5E+02 0.0075 25.6 9.3 55 528-582 2-60 (181)
380 TIGR01318 gltD_gamma_fam gluta 32.2 3E+02 0.0065 31.5 10.3 139 451-601 71-234 (467)
381 COG0589 UspA Universal stress 32.2 2.3E+02 0.005 25.5 7.8 39 593-634 113-151 (154)
382 PRK08063 enoyl-(acyl carrier p 32.1 2.2E+02 0.0048 28.3 8.3 97 526-625 4-126 (250)
383 PRK11908 NAD-dependent epimera 32.1 1.7E+02 0.0036 31.4 7.8 104 528-636 3-119 (347)
384 TIGR00762 DegV EDD domain prot 32.0 59 0.0013 34.5 4.4 58 520-578 72-137 (275)
385 PRK00247 putative inner membra 32.0 1E+02 0.0022 35.6 6.4 99 195-358 330-428 (429)
386 cd03808 GT1_cap1E_like This fa 31.9 4.5E+02 0.0097 26.3 10.4 96 527-633 189-293 (359)
387 PRK00078 Maf-like protein; Rev 31.9 2.3E+02 0.0049 29.1 8.3 92 532-632 5-104 (192)
388 PRK07269 cystathionine gamma-s 31.8 4.7E+02 0.01 29.0 11.4 97 527-632 71-171 (364)
389 PRK05647 purN phosphoribosylgl 31.8 1.9E+02 0.004 29.7 7.8 75 528-605 5-93 (200)
390 PLN02591 tryptophan synthase 31.7 5.3E+02 0.012 27.6 11.4 101 528-634 82-196 (250)
391 TIGR03812 tyr_de_CO2_Arch tyro 31.7 6.5E+02 0.014 26.9 12.2 99 525-632 76-188 (373)
392 TIGR01822 2am3keto_CoA 2-amino 31.6 2.1E+02 0.0046 31.0 8.6 16 617-632 190-205 (393)
393 TIGR01381 E1_like_apg7 E1-like 31.4 2.2E+02 0.0047 34.8 9.2 107 518-634 331-480 (664)
394 PRK10537 voltage-gated potassi 31.4 5.1E+02 0.011 29.5 11.7 94 526-638 240-340 (393)
395 PRK05557 fabG 3-ketoacyl-(acyl 31.3 3.2E+02 0.007 26.8 9.2 75 526-602 5-92 (248)
396 PRK08306 dipicolinate synthase 31.3 1.6E+02 0.0034 31.9 7.5 68 525-601 151-218 (296)
397 PF00072 Response_reg: Respons 31.2 1.5E+02 0.0032 25.5 6.1 77 554-638 1-82 (112)
398 cd08239 THR_DH_like L-threonin 31.2 2E+02 0.0043 30.5 8.1 53 523-581 161-213 (339)
399 PRK00884 Maf-like protein; Rev 31.2 1.9E+02 0.0041 29.8 7.7 90 532-632 6-102 (194)
400 PRK04694 Maf-like protein; Rev 31.2 2.2E+02 0.0047 29.2 8.1 94 530-632 2-104 (190)
401 PF00185 OTCace: Aspartate/orn 31.1 2E+02 0.0043 28.3 7.6 73 525-599 1-79 (158)
402 PF04321 RmlD_sub_bind: RmlD s 31.1 63 0.0014 34.3 4.4 97 528-642 2-108 (286)
403 PRK13011 formyltetrahydrofolat 31.0 1.4E+02 0.0031 32.4 7.1 50 528-583 93-144 (286)
404 PLN00203 glutamyl-tRNA reducta 30.8 2.7E+02 0.0058 32.9 9.7 71 526-600 266-336 (519)
405 TIGR03542 DAPAT_plant LL-diami 30.8 2.2E+02 0.0047 31.5 8.6 102 523-632 93-211 (402)
406 PRK13936 phosphoheptose isomer 30.8 5.8E+02 0.013 25.8 13.9 23 514-536 31-53 (197)
407 PRK04690 murD UDP-N-acetylmura 30.8 2.9E+02 0.0062 31.7 9.8 91 526-632 8-98 (468)
408 TIGR01737 FGAM_synth_I phospho 30.7 1.5E+02 0.0032 30.8 6.9 67 566-637 15-88 (227)
409 PRK14367 Maf-like protein; Pro 30.7 2.2E+02 0.0047 29.6 8.0 93 531-632 5-109 (202)
410 cd03821 GT1_Bme6_like This fam 30.7 3.4E+02 0.0074 27.4 9.5 98 526-633 203-311 (375)
411 TIGR01279 DPOR_bchN light-inde 30.6 5.9E+02 0.013 28.8 12.1 60 566-634 168-228 (407)
412 TIGR01465 cobM_cbiF precorrin- 30.5 1.6E+02 0.0034 30.0 7.0 53 539-592 61-116 (229)
413 PRK09105 putative aminotransfe 30.3 4.4E+02 0.0096 28.9 10.9 56 523-584 93-148 (370)
414 PRK07178 pyruvate carboxylase 30.2 1E+02 0.0023 35.2 6.2 79 527-607 3-87 (472)
415 PRK05787 cobalt-precorrin-6Y C 30.2 2.8E+02 0.006 27.7 8.6 72 528-602 48-126 (210)
416 TIGR03693 ocin_ThiF_like putat 30.2 3.5E+02 0.0076 32.9 10.5 99 525-631 128-235 (637)
417 PRK04308 murD UDP-N-acetylmura 30.1 3.2E+02 0.007 30.7 10.0 89 526-631 5-95 (445)
418 KOG1430|consensus 30.0 3.2E+02 0.0069 31.0 9.8 111 526-639 4-129 (361)
419 TIGR03215 ac_ald_DH_ac acetald 30.0 3.7E+02 0.008 29.4 10.0 94 528-637 3-98 (285)
420 TIGR03705 poly_P_kin polyphosp 29.9 1.2E+02 0.0026 36.9 6.9 51 533-583 368-420 (672)
421 PRK14058 acetylglutamate/acety 29.8 4.7E+02 0.01 27.8 10.6 108 524-632 26-187 (268)
422 PRK06855 aminotransferase; Val 29.8 3E+02 0.0064 31.0 9.6 103 523-632 94-209 (433)
423 TIGR00441 gmhA phosphoheptose 29.8 1.3E+02 0.0028 29.1 6.0 31 519-549 73-106 (154)
424 PRK12743 oxidoreductase; Provi 29.8 2E+02 0.0043 29.2 7.6 74 526-601 2-88 (256)
425 PRK14851 hypothetical protein; 29.7 3.4E+02 0.0073 33.2 10.5 112 515-634 33-167 (679)
426 PF02550 AcetylCoA_hydro: Acet 29.6 2.5E+02 0.0053 28.5 8.2 109 516-625 12-156 (198)
427 TIGR00204 dxs 1-deoxy-D-xylulo 29.6 3E+02 0.0066 33.0 10.1 66 570-640 515-589 (617)
428 PRK15062 hydrogenase isoenzyme 29.5 1.4E+02 0.0031 33.8 6.9 48 584-634 172-219 (364)
429 cd00555 Maf Nucleotide binding 29.5 3.2E+02 0.007 27.7 8.9 91 532-632 3-100 (180)
430 cd00401 AdoHcyase S-adenosyl-L 29.5 1.7E+02 0.0037 33.5 7.7 64 523-598 199-262 (413)
431 PRK05784 phosphoribosylamine-- 29.4 64 0.0014 37.5 4.4 77 528-605 2-81 (486)
432 PRK11543 gutQ D-arabinose 5-ph 29.4 6.8E+02 0.015 26.7 11.9 35 566-600 106-140 (321)
433 PRK03903 transaldolase; Provis 29.3 6.5E+02 0.014 27.6 11.6 92 506-601 24-122 (274)
434 PRK08202 purine nucleoside pho 29.3 1.8E+02 0.0038 31.3 7.4 75 530-636 156-233 (272)
435 PRK12809 putative oxidoreducta 29.3 2.6E+02 0.0055 33.4 9.4 76 525-602 309-404 (639)
436 PRK06718 precorrin-2 dehydroge 29.1 2.9E+02 0.0062 28.3 8.6 93 525-634 9-101 (202)
437 PRK06358 threonine-phosphate d 29.1 4.8E+02 0.01 28.3 10.8 101 523-632 69-179 (354)
438 TIGR00746 arcC carbamate kinas 29.0 3E+02 0.0064 30.5 9.2 30 514-543 30-60 (310)
439 PLN02427 UDP-apiose/xylose syn 29.0 2E+02 0.0043 31.4 7.9 103 527-635 15-136 (386)
440 PRK02141 Maf-like protein; Rev 29.0 2.4E+02 0.0053 29.4 8.1 94 530-632 11-112 (207)
441 PRK12655 fructose-6-phosphate 28.9 5.9E+02 0.013 26.8 10.9 98 534-638 61-168 (220)
442 PRK09135 pteridine reductase; 28.9 1.5E+02 0.0032 29.3 6.4 98 525-624 5-128 (249)
443 TIGR01426 MGT glycosyltransfer 28.9 1.3E+02 0.0029 32.7 6.5 32 600-637 92-123 (392)
444 cd02522 GT_2_like_a GT_2_like_ 28.8 2.8E+02 0.0061 26.8 8.2 39 528-566 4-43 (221)
445 PRK15029 arginine decarboxylas 28.8 1.9E+02 0.0042 35.7 8.4 83 553-638 2-96 (755)
446 PRK14571 D-alanyl-alanine synt 28.7 1.2E+02 0.0027 32.1 6.1 42 564-605 20-65 (299)
447 PRK09590 celB cellobiose phosp 28.5 2.3E+02 0.0049 26.5 7.0 56 570-634 23-82 (104)
448 PRK00148 Maf-like protein; Rev 28.4 3.6E+02 0.0078 27.8 9.1 91 531-632 4-101 (194)
449 PRK00414 gmhA phosphoheptose i 28.4 2.5E+02 0.0055 28.4 8.0 38 592-636 110-147 (192)
450 COG1064 AdhP Zn-dependent alco 28.4 1.2E+02 0.0027 33.9 6.2 82 482-582 135-216 (339)
451 PRK06719 precorrin-2 dehydroge 28.2 2.4E+02 0.0052 27.7 7.6 90 525-634 12-101 (157)
452 PLN02607 1-aminocyclopropane-1 28.1 3E+02 0.0065 31.4 9.4 104 523-632 118-238 (447)
453 PRK05749 3-deoxy-D-manno-octul 28.1 3.5E+02 0.0077 29.8 9.7 82 549-640 260-357 (425)
454 PRK06756 flavodoxin; Provision 28.0 1.8E+02 0.0039 27.6 6.5 68 567-635 21-91 (148)
455 PLN02695 GDP-D-mannose-3',5'-e 28.0 2.6E+02 0.0056 30.8 8.6 106 522-635 17-136 (370)
456 cd04196 GT_2_like_d Subfamily 27.9 5.4E+02 0.012 24.5 9.9 56 528-583 3-60 (214)
457 TIGR01139 cysK cysteine syntha 27.7 86 0.0019 33.4 4.7 58 523-584 54-111 (298)
458 PRK02478 Maf-like protein; Rev 27.7 3.6E+02 0.0078 27.8 9.0 92 530-632 5-109 (199)
459 PRK09276 LL-diaminopimelate am 27.6 6.3E+02 0.014 27.4 11.4 99 527-632 95-204 (385)
460 PRK07589 ornithine cyclodeamin 27.5 4.7E+02 0.01 29.3 10.5 100 516-618 117-228 (346)
461 TIGR01699 XAPA xanthosine phos 27.4 2E+02 0.0044 30.7 7.3 78 529-638 133-213 (248)
462 TIGR01182 eda Entner-Doudoroff 27.4 2.3E+02 0.005 29.5 7.6 77 556-632 13-106 (204)
463 TIGR01703 hybrid_clust hydroxy 27.3 7E+02 0.015 29.8 12.2 110 439-555 121-244 (522)
464 KOG3349|consensus 27.2 1.1E+02 0.0023 31.2 4.9 53 521-577 76-128 (170)
465 PRK07777 aminotransferase; Val 27.1 6.8E+02 0.015 27.3 11.6 99 527-632 87-197 (387)
466 PRK00451 glycine dehydrogenase 27.0 9.2E+02 0.02 26.9 13.6 98 527-632 131-238 (447)
467 COG1154 Dxs Deoxyxylulose-5-ph 27.0 2.5E+02 0.0054 34.0 8.6 73 564-641 515-596 (627)
468 cd04241 AAK_FomA-like AAK_FomA 26.9 4.9E+02 0.011 27.0 10.1 105 526-633 38-167 (252)
469 PRK11104 hemG protoporphyrinog 26.9 1.3E+02 0.0029 29.9 5.7 65 567-634 20-85 (177)
470 PRK10637 cysG siroheme synthas 26.9 2.8E+02 0.006 31.9 8.9 95 525-635 11-105 (457)
471 TIGR01214 rmlD dTDP-4-dehydror 26.9 1.7E+02 0.0036 30.0 6.6 27 611-637 76-102 (287)
472 PRK07505 hypothetical protein; 26.8 7.1E+02 0.015 27.5 11.8 101 527-632 107-214 (402)
473 PRK11071 esterase YqiA; Provis 26.8 4.5E+02 0.0097 26.2 9.3 83 528-638 4-94 (190)
474 PF00899 ThiF: ThiF family; I 26.7 5.3E+02 0.011 24.0 9.4 99 527-634 3-124 (135)
475 PRK12452 cardiolipin synthetas 26.7 3.8E+02 0.0082 31.4 10.0 96 506-619 343-445 (509)
476 KOG1549|consensus 26.6 5E+02 0.011 30.3 10.6 118 508-632 87-216 (428)
477 TIGR03589 PseB UDP-N-acetylglu 26.6 3.7E+02 0.0081 28.8 9.3 109 525-636 3-125 (324)
478 PRK03359 putative electron tra 26.5 3.5E+02 0.0077 29.0 9.0 88 528-637 58-149 (256)
479 COG0794 GutQ Predicted sugar p 26.5 7.5E+02 0.016 26.0 11.0 33 567-599 104-136 (202)
480 TIGR01181 dTDP_gluc_dehyt dTDP 26.4 2.6E+02 0.0057 28.7 7.9 107 529-635 2-125 (317)
481 cd01065 NAD_bind_Shikimate_DH 26.4 2.9E+02 0.0063 25.8 7.6 72 525-601 18-89 (155)
482 PRK12381 bifunctional succinyl 26.4 9.1E+02 0.02 26.8 12.6 103 526-632 97-222 (406)
483 PRK13525 glutamine amidotransf 26.3 1.4E+02 0.003 30.1 5.7 76 551-640 3-85 (189)
484 PRK05937 8-amino-7-oxononanoat 26.3 8.4E+02 0.018 26.6 12.1 34 597-632 145-178 (370)
485 PRK12828 short chain dehydroge 26.3 3.5E+02 0.0075 26.5 8.4 74 525-601 6-90 (239)
486 PF00070 Pyr_redox: Pyridine n 26.3 3.7E+02 0.0081 22.7 7.6 53 529-581 2-59 (80)
487 PRK13399 fructose-1,6-bisphosp 26.2 2.2E+02 0.0047 32.1 7.6 93 536-631 29-140 (347)
488 PRK14368 Maf-like protein; Pro 26.0 3.6E+02 0.0079 27.8 8.7 92 530-632 7-105 (193)
489 cd01485 E1-1_like Ubiquitin ac 25.9 7.1E+02 0.015 25.3 11.1 109 515-634 9-145 (198)
490 PRK15481 transcriptional regul 25.9 6.5E+02 0.014 28.0 11.4 51 527-583 143-193 (431)
491 PRK08558 adenine phosphoribosy 25.8 5.4E+02 0.012 27.2 10.1 113 514-634 98-235 (238)
492 PRK09496 trkA potassium transp 25.7 2.2E+02 0.0048 31.7 7.6 95 528-638 2-103 (453)
493 PRK08666 5'-methylthioadenosin 25.7 2.2E+02 0.0047 30.2 7.2 74 530-635 127-204 (261)
494 cd01979 Pchlide_reductase_N Pc 25.6 1.8E+02 0.0039 32.6 6.9 72 552-634 156-230 (396)
495 PRK06895 putative anthranilate 25.6 2.9E+02 0.0062 27.6 7.8 77 553-637 3-82 (190)
496 cd01996 Alpha_ANH_like_III Thi 25.6 5.6E+02 0.012 24.2 9.4 105 527-636 3-111 (154)
497 PRK11175 universal stress prot 25.5 7E+02 0.015 26.0 11.0 103 528-633 155-298 (305)
498 PRK07904 short chain dehydroge 25.5 4.6E+02 0.0099 26.9 9.4 78 523-601 5-95 (253)
499 cd04251 AAK_NAGK-UC AAK_NAGK-U 25.5 5.6E+02 0.012 27.0 10.3 104 527-633 26-184 (257)
500 TIGR02463 MPGP_rel mannosyl-3- 25.5 70 0.0015 32.0 3.4 43 528-572 9-53 (221)
No 1
>KOG1467|consensus
Probab=100.00 E-value=1.7e-106 Score=870.18 Aligned_cols=526 Identities=41% Similarity=0.608 Sum_probs=406.4
Q ss_pred ccCccccccchhhccCCCCc--hhhhcHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCcccCCCccccCCCC
Q psy17541 170 QTTPASLSQVTTAIMSEKNN--SAELSRDLVKAQREAKKAAKLAAKQKAKVKGDVTAPPDAVTQPESKQSEPSKAKSKSE 247 (717)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~kk~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (717)
-+++.|...+..++..+-.+ ++++|+|++++||++||++|+++++..-- .++-.+|+... +.+++..-....++.+
T Consensus 7 tt~e~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~-~~~~~~p~~~t-~s~~~~~~~~~~s~~~ 84 (556)
T KOG1467|consen 7 TTDELSPIDKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQG-EDKNAEPKDLT-ASAKQARVAVKASLPK 84 (556)
T ss_pred cccccCccchhhhccccccCccccccchHHHHHHHHHhhcCccccccccCC-CccccCccccc-ccccccccchhhcccC
Confidence 34555555555555533333 78999999999999999987666443211 11112222211 2222222111222222
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCCccccCCCccCcccc-CcccCChhhhHHHHHHHHHHHHHHHHHHhhccccC----
Q psy17541 248 PSKEANVQNKPAQGSQDTPKPGGPPATLSNVDNKENVKSE-GDEVKSKAQLKAERRAKQEQQRQAKAAALLEKTKT---- 322 (717)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~kska~~kAERRA~QEaqRAaKa~~k~~~~~~---- 322 (717)
.-.+...-++.... ++..++- .++.+ .+.+-+-..++||||+.||++||+|++++++.+..
T Consensus 85 ~~~e~t~a~~a~~~-------a~~s~~~-------~p~~~~~~ka~~~~~t~a~~~a~~Ea~~a~K~a~kg~~~~~a~~~ 150 (556)
T KOG1467|consen 85 GGAELTVANKAAAA-------AGSSATQ-------SPKKEKPPKAGLAVPTRAERKAIQEAKRAAKTAEKGEGARKAQVI 150 (556)
T ss_pred Ccceecccccchhh-------hcccccc-------CCcccCCcccccccccHHHHhhHHHHHHHHHHhhhcccccccccc
Confidence 22222222211110 0000110 11111 11122333459999999999999999999997532
Q ss_pred -CcccccccCccCCC--CCCCcc---CchhhhccCCCCCCCCCCCCCCCCCCCCCCCcc-ccccccccccCccCCCC---
Q psy17541 323 -SNEKSMTKSKTEDS--KPASEK---SSKTEVLKSKDPNVPSTKKYSGVDGVKATPGTT-LVHKVKLFNHLYRDNLS--- 392 (717)
Q Consensus 323 -~~~~~~~~~~~~~~--~~~~~~---~~~~~v~k~~~~~~p~~~~~~~~~~a~~~~~~~-~~~~v~lFsHL~~~~~~--- 392 (717)
++.+++..+++.|. +.+.|. ++. +. ++..++.+++..-........|.. ...+|.||+||+||++.
T Consensus 151 ~~~kA~~s~a~~~P~~~k~~~p~~t~~~~-~~---~~~~~~~pq~q~kt~~~~~~~rk~V~~~~v~lf~hL~q~~~~tt~ 226 (556)
T KOG1467|consen 151 ERAKANASTAPAIPAVKKNALPVTTSVDQ-AL---KRRAVQNPQNQAKTLASASASRKAVASQKVSLFTHLPQYDRATTQ 226 (556)
T ss_pred cccccCcccccCCCccccccccccccccc-hH---HhhcccchhhhhhhhcccCccccccccceehhhhhhhHhhccccc
Confidence 11122222222221 111111 122 22 233444444311000000011111 12389999999999997
Q ss_pred CCCCCChhHHHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHH
Q psy17541 393 VTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNA 472 (717)
Q Consensus 393 ~~~~~~IHPAVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNA 472 (717)
+.....|||+|++||++|+.|.|.|+|+|||+||++|++||+||++|..++|+|+|...|+++++||.+|||++++||||
T Consensus 227 f~~~~~IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNA 306 (556)
T KOG1467|consen 227 FIFLDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNA 306 (556)
T ss_pred ccccccccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHH
Confidence 23344499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCee
Q psy17541 473 VKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKF 552 (717)
Q Consensus 473 IR~Lk~~I~~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~F 552 (717)
||||+++|+.++.+.++.++|+.|++.|++||+|+|..|.+.|++++.++|.|||+|||||+|++|..+|++||+.|++|
T Consensus 307 iRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~f 386 (556)
T KOG1467|consen 307 IRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKF 386 (556)
T ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 553 RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 553 rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+|+|+||||++||+.++++|..+||+|+|+++++++|+|.+|++||||||+||+||+||+|+||++|||+|++|||||+|
T Consensus 387 rVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlV 466 (556)
T KOG1467|consen 387 RVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLV 466 (556)
T ss_pred EEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccccCCcccccccCCccccccccc-----cccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhH
Q psy17541 633 ACETHKFCERVQTDALVFNELGDPNELISDKS-----AAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPV 707 (717)
Q Consensus 633 ~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~-----~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpv 707 (717)
|||+|||++|+|+|++++|||+||++|....+ .|.+|....++.++|++||+||||||++||||+|++|||||||
T Consensus 467 CCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPv 546 (556)
T KOG1467|consen 467 CCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPV 546 (556)
T ss_pred EechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhccccccccchhheeeccCcHHHHHHHHhhccccCCccchH
Confidence 99999999999999999999999998876644 4789999999999999999999999999999999999999999
Q ss_pred HhhcCCCC
Q psy17541 708 VLRVKPTE 715 (717)
Q Consensus 708 VLR~k~~~ 715 (717)
|||+|...
T Consensus 547 ilr~~~~~ 554 (556)
T KOG1467|consen 547 ILREKKLT 554 (556)
T ss_pred HHhhhhcc
Confidence 99999764
No 2
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=2.4e-70 Score=577.16 Aligned_cols=302 Identities=28% Similarity=0.401 Sum_probs=284.2
Q ss_pred ChhHHHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q psy17541 398 EVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFK 477 (717)
Q Consensus 398 ~IHPAVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk 477 (717)
.|||.+.+++.+|++++|+||+++|++++.+|..++.++.+++. .+|++.|+.++++|.++||++++|+|++|+++
T Consensus 2 ~~~~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~~~~~~----~~l~~~l~~~~~~L~~arPt~v~l~nair~v~ 77 (310)
T PRK08535 2 EVMPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKSDAESP----EEFKAEMRAAANILISTRPTAVSLPNAVRYVM 77 (310)
T ss_pred CCchhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 58999999999999999999999999999999999999988754 46888999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEc
Q psy17541 478 SHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIV 557 (717)
Q Consensus 478 ~~I~~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVv 557 (717)
+... ..+++++|+.|++.+++|+ +++..+++.|++++.++|+||++|||||+|++|+++|+.|++.|++|+|||+
T Consensus 78 ~~~~----~~~~~~~k~~l~e~~~~~~-~e~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~ 152 (310)
T PRK08535 78 RYYS----GETVEEARESVIERAEEFI-ESSENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIAT 152 (310)
T ss_pred Hhhc----cCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 8742 3578999999999999999 5688899999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 558 DGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 558 ESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
||||++||+.|+++|.+.||+||||+|++++|+|++||+||||||+|++||+++||+|||++|++||+|+||||||||+|
T Consensus 153 EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 153 ETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred cCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhHHhhcC
Q psy17541 638 KFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRVK 712 (717)
Q Consensus 638 KFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpvVLR~k 712 (717)
||+++++.|..+.+|++||.+++..+. ....++++++||+||+|||+|||+||||.|++||++++.++|+.
T Consensus 233 K~~~~~~~~~~~~ie~~~~~ev~~~~~----~~~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ps~v~~~~~~~ 303 (310)
T PRK08535 233 KFSPKTLLGELVEIEERDPTEVLPEEI----LAKLPGVKVRNPAFDVTPPEYIDAIITEIGAIPPEMAYTIIKEY 303 (310)
T ss_pred eecCCCCCCCcceecccCHHHhccccc----ccCCCCceeeccCcccCCHHHCCEEEeCCCcCChHHHHHHHHHH
Confidence 999999999999999999999986521 12456899999999999999999999999999999999999864
No 3
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=1.2e-68 Score=562.23 Aligned_cols=297 Identities=27% Similarity=0.381 Sum_probs=277.7
Q ss_pred HHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHhc
Q psy17541 403 IYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQ 482 (717)
Q Consensus 403 VlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~~ 482 (717)
+..+...+++++++||.+++++++.+|..++....+.+ ..+|.+.|+.++++|.++||++++|+|++|++++.|+.
T Consensus 2 ~~~~~~~ik~~~vrGa~~ia~~aa~~l~~~~~~~~~~~----~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~ 77 (301)
T TIGR00511 2 VEETAEKIRSMEIRGAGRIARAAAAALMEQAAKAESAS----PEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSG 77 (301)
T ss_pred HHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhcccCC----HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhcc
Confidence 34577889999999999999999999999998876643 46788999999999999999999999999999999853
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCc
Q psy17541 483 LPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPW 562 (717)
Q Consensus 483 l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~ 562 (717)
.+++++|+.|++.+++|+ +++..+++.|++++.++|+||++|||||+|++|+++|+.|++.|++|+|||+||||+
T Consensus 78 ----~~~~~~k~~l~~~~~~~~-~e~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~ 152 (301)
T TIGR00511 78 ----EDVETLRETVIERADAFI-NQSDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPR 152 (301)
T ss_pred ----CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCc
Confidence 568899999999999999 678999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 563 YEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 563 ~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
+||+.|+++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+||+++|++||+|+||||||||+|||++.
T Consensus 153 ~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~~~ 232 (301)
T TIGR00511 153 KQGHITAKELRDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETYKFHPK 232 (301)
T ss_pred chHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccceecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhHHhhcC
Q psy17541 643 VQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRVK 712 (717)
Q Consensus 643 v~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpvVLR~k 712 (717)
++.|..+.+|.+||+|++..++. ...++++++||+||||||+|||+||||.|++||++++++||+.
T Consensus 233 ~~~~~~~~ie~~~~~ev~~~~~~----~~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~p~~i~~~l~~~ 298 (301)
T TIGR00511 233 TITGELVEIEERDPTEVLDEEDL----KQLGAVKVRNPAFDVTPAEYIDAIITEVGQIPPEMAYTIIKEL 298 (301)
T ss_pred CCCCCcccccccCHHHhccccCc----cCCCCccccCcceecCCHHHCCEEEeCCCcCCcHHHHHHHHHH
Confidence 99999999999999999875432 2346899999999999999999999999999999999999864
No 4
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-68 Score=558.01 Aligned_cols=299 Identities=29% Similarity=0.448 Sum_probs=283.8
Q ss_pred ChhHHHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q psy17541 398 EVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFK 477 (717)
Q Consensus 398 ~IHPAVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk 477 (717)
.+||.|..+...++++.|.||.++|++++++|..++.+++|+.. ++|++.|+...+.|...||+++||+|++|+++
T Consensus 1 ~~~~~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~~~~~~----~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~ 76 (301)
T COG1184 1 MIMPEVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQAPTV----EELIDAIRELSETLVKARPTAVSLGNLIRFVL 76 (301)
T ss_pred CchHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhccccccH----HHHHHHHHHHHHHHHhcCCcceeHHHHHHHHH
Confidence 37999999999999999999999999999999999999999884 67899999999999999999999999999998
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEc
Q psy17541 478 SHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIV 557 (717)
Q Consensus 478 ~~I~~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVv 557 (717)
+. ....+.++.++.+.+.+++|+ ++++.|.+.|++.++++|+||++|||||+|++|+.+|..|++.|++|+|||+
T Consensus 77 ~~----~~~~~~~~~~~~~~~~~~~~i-~~~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~Vt 151 (301)
T COG1184 77 RD----SSGGDKENRRQSLIKAAQEFI-DRVEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVT 151 (301)
T ss_pred hc----ccccchhhHHHHHHHhHHHHH-HHHHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEE
Confidence 82 234568889999999999999 6899999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 558 DGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 558 ESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
||||.+||+.|++.|.++||++++|+|++++++|.+||+||||||+|++||+++||+||+++|++||++++|||||||+|
T Consensus 152 ESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesy 231 (301)
T COG1184 152 ESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESY 231 (301)
T ss_pred cCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhHHhhcC
Q psy17541 638 KFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRVK 712 (717)
Q Consensus 638 KFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpvVLR~k 712 (717)
||+++++.|..+.+|++|+.++....+ ..+++++||+||+|||+|||+||||+|++||++++.|+++.
T Consensus 232 Kf~p~~~~~~~~~~~~~~~~e~~~~~~-------~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~~~~~i~~e~ 299 (301)
T COG1184 232 KFVPKTLLDTLVEIELRDPLEVAREEP-------LGNLKVRNPAFDVTPPEYIDAIITELGIIPPSSIYRILREL 299 (301)
T ss_pred cccccccCCCcceeeccChhhccccCc-------ccCccccccccCCCcHHHhheeeecCCCCCchhHHHHHHHh
Confidence 999999999999999999999875321 22689999999999999999999999999999999999974
No 5
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=8.3e-67 Score=538.12 Aligned_cols=281 Identities=36% Similarity=0.553 Sum_probs=246.9
Q ss_pred cccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHhcCCCCCCHHHHH
Q psy17541 414 VVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQAR 493 (717)
Q Consensus 414 ~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~~l~~~~s~ee~K 493 (717)
+|+||+++|++++.+|+++|.++.+++. .+|++.|+.++++|.++||++++|+|+++++++.+.......+.++++
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~~~~~~----~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~~~~~~~~~~ 76 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDSKATTV----QELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLDESEDFEEAK 76 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHCHCSSH----HHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhhcccchHHHH
Confidence 5899999999999999999999998875 568999999999999999999999999999999887666667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHH
Q psy17541 494 LRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLV 573 (717)
Q Consensus 494 e~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~ 573 (717)
+.|++.+++|++ ++..+.+.|++++.++|+||++|||||||++|+++|..|++.|++|+|||+||||++||+.||++|.
T Consensus 77 ~~l~~~i~~~~~-e~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~ 155 (282)
T PF01008_consen 77 QSLLEAIDEFLD-EIEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELA 155 (282)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHH
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhh
Confidence 999999999995 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEcchHHHHHhhh-ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCcccccccCCcccccc
Q psy17541 574 KHQVDCSYVLLSAVSYIMRE-VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNE 652 (717)
Q Consensus 574 ~~GI~vTyI~DSAVsyiM~~-VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~rv~~Ds~v~NE 652 (717)
+.||+|+||+|++++|+|++ ||+||||||+|++||+|+|++||+++|++||+|+|||||+||+|||+++++.|....||
T Consensus 156 ~~gi~v~~i~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~~e 235 (282)
T PF01008_consen 156 EAGIPVTLIPDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDSFNE 235 (282)
T ss_dssp HTT-EEEEE-GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGSSS-
T ss_pred hcceeEEEEechHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchhhhh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCC
Q psy17541 653 LGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPC 702 (717)
Q Consensus 653 l~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpP 702 (717)
+++|.++...++.. ...++++++||+||+|||+|||+||||.|+++|
T Consensus 236 ~~~~~~v~~~~~~~---~~~~~v~~~~p~~D~tP~~~It~~iTe~G~~~P 282 (282)
T PF01008_consen 236 LRDPQEVLPFDGSS---IVPENVDVINPLFDYTPPDLITLIITELGILPP 282 (282)
T ss_dssp B--THHHHEETTEE---ESTTTEEEE-BSEEEEEGGG-SEEEETTEEE-C
T ss_pred ccccceeeccCCcc---cccceeeccCccEeecCHHHCCEEEcCCCCCCc
Confidence 99999998764321 124589999999999999999999999999998
No 6
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=1e-65 Score=540.67 Aligned_cols=289 Identities=24% Similarity=0.323 Sum_probs=267.0
Q ss_pred HHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHhc
Q psy17541 403 IYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQ 482 (717)
Q Consensus 403 VlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~~ 482 (717)
+..+...|++++|+||++++++++.+|..++..+.+.+ .++|.+.|+.++++|.++||++++|+|+++++++.+..
T Consensus 4 ~~~~~~~I~~m~vrGa~~ia~aa~~~l~~~~~~~~~~~----~~e~~~~l~~~~~~L~~~RPt~v~l~na~~~~~~~i~~ 79 (303)
T TIGR00524 4 YEDVADAIKSMVVRGAPAIGVAAAYGLALAARKIETDN----VEEFKEDLEKAADFLLSTRPTAVNLFWALERVLNSAEN 79 (303)
T ss_pred HHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHhc
Confidence 56788999999999999999999999999998876654 35788889999999999999999999999999998863
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCc--------hHHHHHHHHHHHcCCeeEE
Q psy17541 483 LPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCS--------SLVEKILLTAHEKGTKFRV 554 (717)
Q Consensus 483 l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~S--------StV~~vL~~A~e~Gk~FrV 554 (717)
..+++++|+.|++.+++|+++.+ .+++.|+++|.++|+||++|||||+| ++|+.+|+.|+++|++|+|
T Consensus 80 ---~~~~~~~k~~l~~~~~~~~~e~~-~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~~V 155 (303)
T TIGR00524 80 ---GESVEEAKESLLREAIEIIEEDL-ETNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRIRV 155 (303)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHcCCceEE
Confidence 35789999999999999997665 58999999999999999999999999 9999999999999999999
Q ss_pred EEcCCCCchhH-HHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 555 IIVDGSPWYEG-KEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 555 IVvESRP~~EG-r~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
||+||||++|| +.|+++|.+.||+|+||+|++++|+|+ +||+||+|||+|++||+++||+|||++|++||+|+||||
T Consensus 156 ~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~ 235 (303)
T TIGR00524 156 IACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFF 235 (303)
T ss_pred EECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEE
Confidence 99999999999 999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCC
Q psy17541 632 AACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPC 702 (717)
Q Consensus 632 V~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpP 702 (717)
||||+|||+++.+.+..+.+|.+||.|+....+. ...+++++++||+||||||+|||+||||.|+++|
T Consensus 236 V~a~s~K~~~~~~~g~~i~~e~~~~~ev~~~~~~---~~~~~~~~v~np~fD~TP~~lIt~iiTe~Gv~~p 303 (303)
T TIGR00524 236 VAAPLSTFDTKTSCGEDIVIEERDPEEVAQVGGV---RIAPLGVKVYNPAFDITPHDLIDAIITEKGIITP 303 (303)
T ss_pred EecccccccCCCCCccccccccCCHHHhccccCc---ccCCCCceeecccccCCCHHHCCEEEcCCCccCc
Confidence 9999999999999887888899999998765321 1124689999999999999999999999999987
No 7
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=1e-63 Score=533.10 Aligned_cols=295 Identities=21% Similarity=0.276 Sum_probs=267.8
Q ss_pred HHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHh
Q psy17541 402 AIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLT 481 (717)
Q Consensus 402 AVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~ 481 (717)
.+..+...|+++.|+|++++|+++..+|...+.++...+ ..+|...|+.++++|.++||++++|+|+++++++.+.
T Consensus 32 ~~~~v~~aI~~m~vrGApaig~aaa~~lal~~~~~~~~~----~~~~~~~l~~~~~~L~~~RPtavnL~~ai~~~~~~i~ 107 (344)
T PRK05720 32 TAEEVADAIRDMVVRGAPAIGIAAAYGMALAAREDASDD----GEEFLKKLEEAAAYLAASRPTAVNLFWALDRMREVLA 107 (344)
T ss_pred CHHHHHHHHHhCeecCCcHHHHHHHHHHHHHHhhccCCC----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 356788899999999999999999999998888764443 3568888999999999999999999999999999886
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCch--------HHHHHHHHHHHcCCeeE
Q psy17541 482 QLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSS--------LVEKILLTAHEKGTKFR 553 (717)
Q Consensus 482 ~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SS--------tV~~vL~~A~e~Gk~Fr 553 (717)
. .+++++++.|++.+++|++|.+ .+++.|+++|.++|++|++|||||+|+ |++++|+.|+++|++|+
T Consensus 108 ~----~~~~~~~~~l~~~a~~~~~e~~-~~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~ 182 (344)
T PRK05720 108 P----LPGAERKAALEEEAIEIHEEDV-EINRAIGEHGLTLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIH 182 (344)
T ss_pred c----CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCEEEEecCCCcceecchhHHHHHHHHHHHcCCceE
Confidence 5 2578999999999999996654 589999999999999999999999996 56889999999999999
Q ss_pred EEEcCCCCchhHH-HHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcE
Q psy17541 554 VIIVDGSPWYEGK-EMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPV 630 (717)
Q Consensus 554 VIVvESRP~~EGr-~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPV 630 (717)
|||+||||++||. .++++|.+.||+||||+|++++|+|+ +||+||+|||+|++||+++||+|||++|++||+|+|||
T Consensus 183 V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPf 262 (344)
T PRK05720 183 VYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPF 262 (344)
T ss_pred EEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCE
Confidence 9999999999997 77999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred EecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhHH
Q psy17541 631 LAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVV 708 (717)
Q Consensus 631 yV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpvV 708 (717)
|||||+|||++..+.|..+.+|++||+|++..++. +..++++.++||+||||||+|||+||||.|+++|+.+-.|
T Consensus 263 yV~a~~~kfd~~~~~g~~i~iE~r~~~ev~~~~~~---~~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~p~~~~~~ 337 (344)
T PRK05720 263 YVAAPSSTIDLTLADGKEIPIEERDPEEVTEVGGV---RIAPEGVKVYNPAFDVTPAELITGIITEKGIVAPPDTANL 337 (344)
T ss_pred EEeccccccCcCCCCCcccccccCCHHHhcccCCc---ccCCCCceeecccccCCCHHHCCEEEcCCCccCccHHHHH
Confidence 99999999999999888889999999999876432 2245689999999999999999999999999999865543
No 8
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=2.7e-63 Score=527.13 Aligned_cols=288 Identities=21% Similarity=0.237 Sum_probs=262.8
Q ss_pred HHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHh
Q psy17541 402 AIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLT 481 (717)
Q Consensus 402 AVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~ 481 (717)
.+..+...|+++.|+|+.++++++..+|.....++ . ...+|...|+.++++|.++||++++|+||++++++.+.
T Consensus 29 ~~~~~~~aI~~m~vRGApaig~~aa~~~~l~~~~~-~-----~~~~~~~~l~~~~~~L~~~RPtavnL~~A~~~~~~~i~ 102 (331)
T TIGR00512 29 TVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREA-D-----EREEFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALE 102 (331)
T ss_pred CHHHHHHHHHhCcccCchHHHHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHHh
Confidence 35678889999999999999999988887665554 1 23578899999999999999999999999999999987
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC----eEEEecCch--------HHHHHHHHHHHcC
Q psy17541 482 QLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDD----VILTYGCSS--------LVEKILLTAHEKG 549 (717)
Q Consensus 482 ~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGd----vILTyg~SS--------tV~~vL~~A~e~G 549 (717)
.+ .+++++|+.|++.+++|+++ +..+++.|+++|.++|+||+ +|||||+|+ +|+.+|+.|++.|
T Consensus 103 ~~---~~~~~~k~~l~e~a~~~~~e-~~~~~~~I~~~g~~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~g 178 (331)
T TIGR00512 103 AA---KTVADIKEALLAEAERILEE-DLEDNRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEKG 178 (331)
T ss_pred cc---CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHcC
Confidence 63 57899999999999999954 56799999999999999999 999998764 8899999999999
Q ss_pred CeeEEEEcCCCCchhHH-HHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhC
Q psy17541 550 TKFRVIIVDGSPWYEGK-EMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAF 626 (717)
Q Consensus 550 k~FrVIVvESRP~~EGr-~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~ 626 (717)
++|+|||+||||++||. .++++|.+.||+|+||+|++++|+|+ +||+||+|||+|++||+++||+|||++|++||+|
T Consensus 179 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~ 258 (331)
T TIGR00512 179 RLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHH 258 (331)
T ss_pred CceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHh
Confidence 99999999999999996 77999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCcEEecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCC
Q psy17541 627 NVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPC 702 (717)
Q Consensus 627 ~VPVyV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpP 702 (717)
+||||||||+|||++....+..+.+|++||+|+....+ .+..++++.++||+||||||+|||+||||.|++.|
T Consensus 259 ~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~~~~g---~~~~~~~~~v~Np~FD~TP~~lIt~iITe~Gv~~p 331 (331)
T TIGR00512 259 GVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVGG---VRIAPPGIDVWNPAFDVTPAELITGIITEKGVITP 331 (331)
T ss_pred CCCEEEeccccccccCCCCccccccccCCHHHhcccCC---cccCCCCceeecccccCCCHHHCCEEEccCCccCC
Confidence 99999999999999998888888999999999987543 23356789999999999999999999999999976
No 9
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=2.8e-61 Score=500.74 Aligned_cols=271 Identities=22% Similarity=0.288 Sum_probs=244.1
Q ss_pred hHHHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHH
Q psy17541 400 HPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSH 479 (717)
Q Consensus 400 HPAVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~ 479 (717)
.|.+..+...++++.|+|+.+++++++.+|......+. . .+|+..|....++|.++||++++|.|+++++
T Consensus 3 ~~~~~~~~~~i~~m~vrGAp~i~~~aa~~l~~~a~~~~---~----~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~--- 72 (275)
T PRK08335 3 PPEVREILEEMKAERIRGASWLAKKGAEAYLLLAEELD---G----EELENALKELREEIPEVNPTMASLYNLARFI--- 72 (275)
T ss_pred chHHHHHHHHHhhceecCHHHHHHHHHHHHHHHHHhcC---h----HHHHHHHHHHHHHHHHcCCcHHhHHHHHHHh---
Confidence 46778889999999999999999999999875554431 1 3577889999999999999999999999997
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCC
Q psy17541 480 LTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDG 559 (717)
Q Consensus 480 I~~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvES 559 (717)
+.++.++.|.+.+++|+ +++..++++|++++.++|.+|++|||||+|++|+++|+.|+++|++|+|||+||
T Consensus 73 --------~~~~~~~~~~~~a~~~~-~~~~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~Es 143 (275)
T PRK08335 73 --------PITNNPELVKSRAEEFL-RLMEEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTES 143 (275)
T ss_pred --------chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 13567788999999999 567889999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCcc
Q psy17541 560 SPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKF 639 (717)
Q Consensus 560 RP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKF 639 (717)
||++||+.|+++|.+.||+|+||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||
T Consensus 144 rP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~ 223 (275)
T PRK08335 144 APDYEGLALANELEFLGIEFEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETFKF 223 (275)
T ss_pred CCchhHHHHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCC
Q psy17541 640 CERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTS 704 (717)
Q Consensus 640 s~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsS 704 (717)
++.+..++ +..|.+++ ..+++.++||+||+|||+|||+||||.|++.|..
T Consensus 224 ~~~~~~~~-i~ieer~~--------------~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~~ 273 (275)
T PRK08335 224 HPELKSEE-VELVERPY--------------ARQGHRVRNVLFDVTPWKYVRGIITELGILVPPR 273 (275)
T ss_pred cccCCCCC-ccccccCC--------------CCCCceecCcCccCCCHHHCCEEEccCCccCCCC
Confidence 99877663 33444432 2467899999999999999999999999997753
No 10
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.2e-60 Score=511.42 Aligned_cols=293 Identities=21% Similarity=0.272 Sum_probs=260.9
Q ss_pred HHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHhc
Q psy17541 403 IYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQ 482 (717)
Q Consensus 403 VlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~~ 482 (717)
+..+...|+++.|+|+.++++++..+|...+...... ...+|.+.|+..+++|.++||++++|.||++++++.+..
T Consensus 46 ~~~v~~aI~~M~vRGApaigiaAa~glal~~~~~~~~----~~~~~~~~l~~~~~~L~~aRPTaVnL~~a~~~~~~~~~~ 121 (363)
T PRK05772 46 VEEVALAIRNMQVRGAPAIGITAGYGMVLALIENNVK----TLDDAIRELTRAKTILDSARPTAVNLVWATSRMLNKAKN 121 (363)
T ss_pred HHHHHHHHHhCcccCCcHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHhcCCcHHhHHHHHHHHHHHHHh
Confidence 5667889999999999999999999988777764322 235688899999999999999999999999999998764
Q ss_pred CC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCch---------HHHHHHHHHHHcCC
Q psy17541 483 LP---NDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSS---------LVEKILLTAHEKGT 550 (717)
Q Consensus 483 l~---~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SS---------tV~~vL~~A~e~Gk 550 (717)
.. ...+++++++.+.+.++.|+++++. ++++|++++.++|.||++|||||+|+ +++.+|+.|++.|+
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~-~~~~I~~~g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk 200 (363)
T PRK05772 122 TVESGNAKSVNELIELLKVEAKKIFEEEYD-AEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGM 200 (363)
T ss_pred hhccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCC
Confidence 31 1246899999999999999976654 89999999999999999999999885 57899999999999
Q ss_pred eeEEEEcCCCCchhHH-HHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCC
Q psy17541 551 KFRVIIVDGSPWYEGK-EMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFN 627 (717)
Q Consensus 551 ~FrVIVvESRP~~EGr-~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~ 627 (717)
+|+|||+||||++||. .++++|.+.|||||||+|++++|+|+ +||+||+|||+|++||+++||+|||++|++||+||
T Consensus 201 ~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~ 280 (363)
T PRK05772 201 SVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELG 280 (363)
T ss_pred eEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhC
Confidence 9999999999999995 77999999999999999999999996 49999999999999999999999999999999999
Q ss_pred CcEEecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCC
Q psy17541 628 VPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTS 704 (717)
Q Consensus 628 VPVyV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsS 704 (717)
||||||||+|||+++++.|+ +.+|.++|+|+....+ .+..++++.++||+||||||+|||+||||.|++.|..
T Consensus 281 vPfyV~ap~~k~d~~~~~~~-i~ieer~p~ev~~~~~---~~~~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~~ 353 (363)
T PRK05772 281 IPFYALAPTSTFDLKSDVND-VKIEERDPNEVRTIRG---VPITPEDVNVYNPVFDVTPPKYITGIITEKGIIYPPF 353 (363)
T ss_pred CCEEEEccccccCccccccc-cccccCCHHHhcccCC---ceecCCCceeeccCccCCCHHHCCEEEccCCccCCch
Confidence 99999999999999987755 4567789999987543 2445778999999999999999999999999998863
No 11
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=3.1e-60 Score=505.17 Aligned_cols=291 Identities=21% Similarity=0.180 Sum_probs=258.5
Q ss_pred HHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHh
Q psy17541 402 AIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLT 481 (717)
Q Consensus 402 AVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~ 481 (717)
.+..+...|+++.|+|+.++++++..+|......+...+ ..+|...|+..+++|.++||++++|+|++++++..+.
T Consensus 32 ~~~~v~~aI~~m~vRGApaig~aaa~g~~l~~~~~~~~~----~~~~~~~l~~~~~~L~~aRPTavnL~~a~~r~~~~~~ 107 (339)
T PRK06036 32 TLESLCEAIKSLRVRGAPALGAAGGYGIALAARLSKAKD----VDELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAAL 107 (339)
T ss_pred CHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhcccCC----HHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHhh
Confidence 356778899999999999999999888866555543332 3578899999999999999999999999988887665
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCch--------HHHHHHHHHHHcCCeeE
Q psy17541 482 QLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSS--------LVEKILLTAHEKGTKFR 553 (717)
Q Consensus 482 ~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SS--------tV~~vL~~A~e~Gk~Fr 553 (717)
. ..+++++++.+++.+++|++ +...+++.|+++|.++|++|++|||||+|+ +++.+|+.|+++|++|+
T Consensus 108 ~---~~~~~~~~~~~~e~a~~~~~-e~~~~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~ 183 (339)
T PRK06036 108 D---AEDVEEIRDIALREAERIAE-EDVARNKLIGKHGAKLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIK 183 (339)
T ss_pred c---cCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCEEEEecCCccccccccchHHHHHHHHHHcCCceE
Confidence 4 25689999999999999995 566799999999999999999999999995 67899999999999999
Q ss_pred EEEcCCCCchhHH-HHHHHHHhCCCcEEEEcchHHHHHhhh--ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcE
Q psy17541 554 VIIVDGSPWYEGK-EMLRRLVKHQVDCSYVLLSAVSYIMRE--VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPV 630 (717)
Q Consensus 554 VIVvESRP~~EGr-~lA~~L~~~GI~vTyI~DSAVsyiM~~--VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPV 630 (717)
|||+||||++||. .++++|.+.|||||||+|++++|+|++ ||+||+|||+|++|| ++||+|||++|++||+|||||
T Consensus 184 V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPf 262 (339)
T PRK06036 184 VIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPF 262 (339)
T ss_pred EEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhccCCCCEEEECccchhhcC-eehhhhHHHHHHHHHHhCCCE
Confidence 9999999999995 578999999999999999999999987 999999999999997 999999999999999999999
Q ss_pred EecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCCh
Q psy17541 631 LAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSV 705 (717)
Q Consensus 631 yV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSV 705 (717)
||||++++|+.....| .+.+|.++|+|+....+. ...++++.++||+||||||+|||+||||.|++.|+.+
T Consensus 263 yV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~~~~~---~~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~P~~~ 333 (339)
T PRK06036 263 YVAAPLSTFDFEGWEG-SVKIEERDPDELRYCGKT---QIAPKDVPVYNPAFDATPMENVTAIITEKGVFYPPFL 333 (339)
T ss_pred EEEeecCccCCCcCCC-CcccccCCHHHhccccCc---ccCCCCceeeCcccccCCHHHCCEEEccCCcccCCcc
Confidence 9999999999987777 567899999999875431 1245789999999999999999999999999988643
No 12
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=6e-59 Score=496.70 Aligned_cols=294 Identities=16% Similarity=0.217 Sum_probs=263.7
Q ss_pred HHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHh
Q psy17541 402 AIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLT 481 (717)
Q Consensus 402 AVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~ 481 (717)
.+..+...|+++.|+|+.++++++..+|...+..+...+ ..+|.+.|+..+.+|.++||+++||.||++++++.+.
T Consensus 43 ~~~~v~~aI~~M~vRGApaIgvaAa~glal~~~~~~~~~----~~~~~~~l~~~~~~L~~~RPTavnL~~a~~~~~~~~~ 118 (356)
T PRK08334 43 TVEEVAEAIKTMTVRGAPAIGAAAAFGLALYAETSKAKT----KDEFMDGFYKAYETLKNTRPTAVNLFWALNRIKKLVE 118 (356)
T ss_pred CHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhcccCC----HHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHHHHHHH
Confidence 356788899999999999999999999998887753322 3568888999999999999999999999999998886
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecC--------chHHHHHHHHHHHcCCeeE
Q psy17541 482 QLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGC--------SSLVEKILLTAHEKGTKFR 553 (717)
Q Consensus 482 ~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~--------SStV~~vL~~A~e~Gk~Fr 553 (717)
.... .+++++++.+++.++.|+++. ..++++|++++.++|.||+ |||||+ |.||+.+|+.|+++|+.|+
T Consensus 119 ~~~~-~~~~~~~~~l~~~a~~i~~~d-~~~~~~Ig~~g~~li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~ 195 (356)
T PRK08334 119 EHLE-DPLDEIKRLIVEEAQKIADED-VEANLRMGHYGAEVLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKL 195 (356)
T ss_pred hhcc-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCC-EEEecCcchhhhcccchHHHHHHHHHHcCCeEE
Confidence 4322 468899999999999999654 5589999999999999999 999995 6789999999999999999
Q ss_pred EEEcCCCCchhHHHH-HHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcE
Q psy17541 554 VIIVDGSPWYEGKEM-LRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPV 630 (717)
Q Consensus 554 VIVvESRP~~EGr~l-A~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPV 630 (717)
|||+||||++||..| +++|.+.||+||+|+|++++|+|+ +||+||+|||+|++||+++||+|||++|++||+|||||
T Consensus 196 V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPf 275 (356)
T PRK08334 196 LWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPF 275 (356)
T ss_pred EEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCE
Confidence 999999999999755 799999999999999999999997 79999999999999999999999999999999999999
Q ss_pred EecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChh
Q psy17541 631 LAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVP 706 (717)
Q Consensus 631 yV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVp 706 (717)
||||+++||+.....+..+.+|.++|++++.+++ |...+++.++||+||||||+|||+||||.|++.|+..-
T Consensus 276 yV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~~----~~~~~~~~v~NPaFDvTPp~lIt~iITE~Gv~~P~~~~ 347 (356)
T PRK08334 276 FTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCGG----CRIAPDVDVYNPAFDVTPHKYLTGIITDRGVVWPPFER 347 (356)
T ss_pred EEEcccCccCCCCCCCcccccccCChHHheeccC----cccCCCcceecccccCCCHHHCCEEEcCCCccCCchHH
Confidence 9999999999888778788899999999987632 33445899999999999999999999999999887544
No 13
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=6.2e-58 Score=485.26 Aligned_cols=274 Identities=22% Similarity=0.266 Sum_probs=234.1
Q ss_pred HHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHhc
Q psy17541 403 IYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQ 482 (717)
Q Consensus 403 VlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~~ 482 (717)
+..+...|++++|+|+.++++++..+|.-..... ..|..++.+|.++||++++|+||+++|+...
T Consensus 42 ~~~~~~aI~~m~vRGAp~ig~~aa~g~~l~~~~~-------------~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~-- 106 (329)
T PRK06371 42 SDDVAYAIKNMVVRGAPAIGVTAAYGLAMASKNG-------------ENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE-- 106 (329)
T ss_pred HHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHhcCcchhhHHHHHHHHHhhc--
Confidence 5678889999999999999999888774433221 4467788999999999999999999997543
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCch--------HHHHHHHHHHHcCCeeEE
Q psy17541 483 LPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSS--------LVEKILLTAHEKGTKFRV 554 (717)
Q Consensus 483 l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SS--------tV~~vL~~A~e~Gk~FrV 554 (717)
.+.+++ .+++.| +..+++.|+++|.++|++|++|||||+|+ +|+++|+.|++.|++|+|
T Consensus 107 ----~~~~~a--------~~~~~e-~~~~~~~I~~~g~~~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V 173 (329)
T PRK06371 107 ----FDMNAA--------RRYAME-IIGRSKKIGEYGNELIKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFV 173 (329)
T ss_pred ----CcHHHH--------HHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEE
Confidence 233333 344433 34478899999999999999999999874 468999999999999999
Q ss_pred EEcCCCCchhHH-HHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 555 IIVDGSPWYEGK-EMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 555 IVvESRP~~EGr-~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
||+||||++||. .++++|.+.||+|+||+|++++|+|+ +||+||+|||+|++||+++||+|||++|++||+||||||
T Consensus 174 ~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfy 253 (329)
T PRK06371 174 FVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFY 253 (329)
T ss_pred EECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEE
Confidence 999999999996 56999999999999999999999998 499999999999999999999999999999999999999
Q ss_pred ecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhH
Q psy17541 632 AACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPV 707 (717)
Q Consensus 632 V~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpv 707 (717)
||||+++|+.....+..+.+|.++|+|++...+. ...+.++.++||+||+|||+|||+||||.|+++|+.|..
T Consensus 254 V~a~~~t~d~~~~~g~~i~iEer~~~ev~~~~g~---~~~p~~~~v~Np~FDvTP~elIt~iITE~Gv~~p~~i~~ 326 (329)
T PRK06371 254 VAAPGSTFDFSIKSGDEIPIEERDENEVLEINGC---RIGPQESHARNPAFDVTPNEYVTGFITEYGIFKPNELWK 326 (329)
T ss_pred EeccccccCCCCCCcCccccccCCHHHeeccCCe---ecCCCCccccCcCccCCCHHHCCEEEccCCccChHHhhh
Confidence 9999877776655666778999999999875331 123567899999999999999999999999999987653
No 14
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-55 Score=459.47 Aligned_cols=294 Identities=21% Similarity=0.280 Sum_probs=261.0
Q ss_pred HHHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHH
Q psy17541 401 PAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHL 480 (717)
Q Consensus 401 PAVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I 480 (717)
..+..++..|+++.|+|++++.+++...+.--..+..... ...++...|..+...|.++||++++|+|++.+++..+
T Consensus 32 ~~~~dva~AIk~M~VRGAPAIgv~AayG~alaa~~~~~~~---~~~e~~~~le~a~~~l~~tRPTAvNLfwal~rm~~~~ 108 (346)
T COG0182 32 KTYEDVAEAIKDMVVRGAPAIGVAAAYGLALAARESKNDS---KGEEFIEALEKAAETLKSTRPTAVNLFWALDRMLNAA 108 (346)
T ss_pred ccHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Confidence 3467889999999999999999988766654444443222 1357888899999999999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCch--------HHHHHHHHHHHcCCee
Q psy17541 481 TQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSS--------LVEKILLTAHEKGTKF 552 (717)
Q Consensus 481 ~~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SS--------tV~~vL~~A~e~Gk~F 552 (717)
.+.. +.++.++.+.+...+...|+++ ++..|+.++.++|.+|+.|||||+.. |.+.+++.||++|+..
T Consensus 109 ~~~~---~v~~~~~~~~~eA~~i~~ED~e-~n~~iG~~G~~ll~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i 184 (346)
T COG0182 109 KEAI---EVKEPKESILQEAEEIAEEDLE-ANRAIGENGAELLPDGDTVLTHCNAGALATVGYGTALGVIRSAHEEGKDI 184 (346)
T ss_pred hhcc---chhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCCeEEeeecCCceeecCccchHHHHHHHHHCCCee
Confidence 7642 3688888888777777766655 89999999999999999999998753 4699999999999999
Q ss_pred EEEEcCCCCchhH-HHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCc
Q psy17541 553 RVIIVDGSPWYEG-KEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVP 629 (717)
Q Consensus 553 rVIVvESRP~~EG-r~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VP 629 (717)
+||+.|+||++|| |+++|+|.+.|||+|+|+||+++|+|+ .||+|++|||+|+.||++.||||||++|++||+||||
T Consensus 185 ~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~g~Id~viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIP 264 (346)
T COG0182 185 RVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTYQLAVLAKHHGIP 264 (346)
T ss_pred EEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHhCCCcEEEEccceeecCCcchhhhhHHHHHHHHHHcCCC
Confidence 9999999999999 799999999999999999999999998 4999999999999999999999999999999999999
Q ss_pred EEecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCC
Q psy17541 630 VLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTS 704 (717)
Q Consensus 630 VyV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsS 704 (717)
|||+++...|+.....++.+.+|.|||+||....+. ...++++.++||.||+||++|||+||||.|++.|..
T Consensus 265 FyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~g~---riap~~v~~yNPAFDvTP~~lItgIITEkGv~~p~~ 336 (346)
T COG0182 265 FYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVGGV---RIAPEGVEAYNPAFDVTPPELITGIITEKGVFTPPF 336 (346)
T ss_pred eEEEcccCccccccCCCCccceeecCHHHeEeeccE---EeCCCCccccCccccCChHHhcceeeeccceecCch
Confidence 999999999999988888899999999999987652 245778999999999999999999999999999963
No 15
>KOG1466|consensus
Probab=100.00 E-value=7.4e-55 Score=442.91 Aligned_cols=280 Identities=26% Similarity=0.346 Sum_probs=246.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHhcC--CCCCCHHHHHHH
Q psy17541 418 SNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQL--PNDITDTQARLR 495 (717)
Q Consensus 418 SnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~~l--~~~~s~ee~Ke~ 495 (717)
.-+.++|++.+|-++|+..+. ++..+|...|+.+.+.|....++++|+..+...+.+.+... -...+++++|++
T Consensus 26 d~a~~vAAIraL~~vL~~s~a----~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~ 101 (313)
T KOG1466|consen 26 DLAMAVAAIRALLEVLRRSQA----TTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQH 101 (313)
T ss_pred hhhhHHHHHHHHHHHHhhccc----chHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 346678999999999998543 45689999999999999999999999999988777777543 234579999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhC
Q psy17541 496 LKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKH 575 (717)
Q Consensus 496 Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~ 575 (717)
++++.+.|+ +++..++..|+..+.+||.||.+|||||||++|+.+|..|++++++|+|||+||||...|.+|+++|.+.
T Consensus 102 l~erg~~F~-~~~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm~~~L~~~ 180 (313)
T KOG1466|consen 102 LLERGELFI-ERARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLMAKELKKL 180 (313)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEecCCCCCchhHHHHHHHhc
Confidence 999999999 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCcccccccCCcc-cccccC
Q psy17541 576 QVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDAL-VFNELG 654 (717)
Q Consensus 576 GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~rv~~Ds~-v~NEl~ 654 (717)
|||||+|+|+|++|+|.+||+||+|||+|.+|||++|++|||++|++||+.++|||||+|+|||.+.+++++. .+++++
T Consensus 181 ~IPvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~ 260 (313)
T KOG1466|consen 181 GIPVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALP 260 (313)
T ss_pred CCCeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccCcccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876542 222211
Q ss_pred CccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhHHh
Q psy17541 655 DPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVL 709 (717)
Q Consensus 655 dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpvVL 709 (717)
|-+... .....+++...+|..|||||+|||++|||+|+++|+.|.-.|
T Consensus 261 -p~~f~~------~~~~~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSaVsdEL 308 (313)
T KOG1466|consen 261 -PFKFSR------PVPEREDVEREHPTVDYTPPEYLTLLFTDLGVLTPSAVSDEL 308 (313)
T ss_pred -CcccCC------CCCcHHhhhhcCCCcccChHHHHHHHHhhccccChhhhhHHH
Confidence 111111 011224677889999999999999999999999999987544
No 16
>KOG1465|consensus
Probab=100.00 E-value=4.6e-54 Score=444.16 Aligned_cols=307 Identities=25% Similarity=0.358 Sum_probs=284.7
Q ss_pred CChhHHHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q psy17541 397 SEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHF 476 (717)
Q Consensus 397 ~~IHPAVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~L 476 (717)
...|-.+..+...++.+.+.||.++|+++|+.|+++|.+-.|+.. .+|.+.++...+.|..+.|+..+.||.+|++
T Consensus 5 ~~~~~~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~rw~~~----n~Li~~vr~~g~~L~~A~psE~~~gNiirrI 80 (353)
T KOG1465|consen 5 NETEDEISEFIAALKKRLVRGSYAIAIETLNLLRQIISRERWSTA----NDLIESVRDVGKKLHAAQPSELSCGNIIRRI 80 (353)
T ss_pred chhhhHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHHhhhcCCchhhhhHHHHHH
Confidence 446678899999999999999999999999999999999999885 4789999999999999999999999999999
Q ss_pred HHHHhcCCC----------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17541 477 KSHLTQLPN----------------------------------DITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNK 522 (717)
Q Consensus 477 k~~I~~l~~----------------------------------~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~ 522 (717)
++.|++... ..+..++|+.|++.|++.+ .+|+..++.|+.++.++
T Consensus 81 lkliReE~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli-~Eie~~~E~Ia~Qa~eh 159 (353)
T KOG1465|consen 81 LKLIREEVLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELI-TEIEGSRENIAVQAIEH 159 (353)
T ss_pred HHHHHHHHHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHH-HHHhhhhHhHHHHHHHH
Confidence 999886420 0123458899999999999 67999999999999999
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcee
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAH 602 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAd 602 (717)
|+++++|||+|+|++|++||++|.+.|++|+|||.|+-|.++|+.||+.|.++||.+++|+|++|+.+|++|+||+||++
T Consensus 160 ihsnEviLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~ 239 (353)
T KOG1465|consen 160 IHSNEVILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTH 239 (353)
T ss_pred hccCceEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCcEEecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccce
Q psy17541 603 ALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTY 682 (717)
Q Consensus 603 aVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~F 682 (717)
+|++||++....|++++|++||+|.+|||||++.||+++.+++|...++|++.|++++++.. ......++++||+|
T Consensus 240 avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e----~~~~~~~~v~nP~f 315 (353)
T KOG1465|consen 240 AVLANGGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSE----GDPAGRVDVLNPAF 315 (353)
T ss_pred eEecCCCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCccc----cCcccceeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999998732 12345689999999
Q ss_pred eccCCCCccEEEeCCCCcCCCChhHHhhcC
Q psy17541 683 DITPSHLVTAVITELAIVPCTSVPVVLRVK 712 (717)
Q Consensus 683 DvTPPeLIT~IITE~GIlpPsSVpvVLR~k 712 (717)
||+||||||+|||+.|-++|+-|+.++-+.
T Consensus 316 DyvppeLVtLFIsNtgg~~PSyvyRl~~d~ 345 (353)
T KOG1465|consen 316 DYVPPELVTLFISNTGGVAPSYVYRLMEDL 345 (353)
T ss_pred ccCChhheeEEEecCCCCChHHHHHHHHHh
Confidence 999999999999999999999999988654
No 17
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=5.7e-52 Score=426.62 Aligned_cols=249 Identities=18% Similarity=0.235 Sum_probs=206.8
Q ss_pred HHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHhcCCCCCC
Q psy17541 409 QYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDIT 488 (717)
Q Consensus 409 q~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~~l~~~~s 488 (717)
.+.++..+||.++++.+|+.|+.--.+ ...++.|.++||.|..+.|..++++..- +.+
T Consensus 5 ~~~~d~~~Gs~~~~~~~l~~l~~~~~~-----------------~~~~~~l~~~~~~Ma~~~n~~~~~~~~~-----~~~ 62 (253)
T PRK06372 5 DLLSDNASGSADVAFKIISFFSHNDID-----------------ENIIKDLKNYFFGMGLVRNVCDSIISGP-----NLR 62 (253)
T ss_pred HhhcCccccHHHHHHHHHHHHhccchh-----------------hhHHHHHHHhCcchHHHHHHHHHHHccC-----cCC
Confidence 456788999999999988777532111 1256778889999999998888776322 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHH
Q psy17541 489 DTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEM 568 (717)
Q Consensus 489 ~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~l 568 (717)
.++++. .+..+.+.|+++|.++| +||+|||||+|++|+.+|..+ ++.|+|||+||||++||+.|
T Consensus 63 ~~~~~~------------~~~~~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~---~~~~~V~v~ESrP~~eG~~~ 126 (253)
T PRK06372 63 PKNLKL------------GIEKHEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSS---EKIKSVYILESRPMLEGIDM 126 (253)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhc---CCCCEEEEecCCCchHHHHH
Confidence 333332 34457889999999999 779999999999999999765 34589999999999999999
Q ss_pred HHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCcccccccCCcc
Q psy17541 569 LRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDAL 648 (717)
Q Consensus 569 A~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~rv~~Ds~ 648 (717)
|++|.+.||+|+||+|++++++|++||+||+|||+|++||+++||+||+++||+||+|+|||||||++|||+++++.+..
T Consensus 127 a~~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~ 206 (253)
T PRK06372 127 AKLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKIERNFLYSTY 206 (253)
T ss_pred HHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeeccccCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765543
Q ss_pred cccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhH
Q psy17541 649 VFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPV 707 (717)
Q Consensus 649 v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpv 707 (717)
...+.. ....| ..+++++||+||+|||+|||+||||.|+++|++||.
T Consensus 207 ~~~~~~----------~~~~~--~~~l~v~Np~FD~TPpelI~~iITE~Gi~~pssV~~ 253 (253)
T PRK06372 207 PNFKNH----------PCSEW--NIDIPCINRYFDKTPPDLIDYYINENGFVKPSDVNI 253 (253)
T ss_pred cccccc----------ccccC--CCCCceeCcCcCCCCHHHCCEEEcCCCccccccCCC
Confidence 211000 11234 357899999999999999999999999999999984
No 18
>KOG1468|consensus
Probab=100.00 E-value=2.8e-46 Score=382.63 Aligned_cols=292 Identities=18% Similarity=0.242 Sum_probs=251.2
Q ss_pred HHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHhcCCCC
Q psy17541 407 GVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPND 486 (717)
Q Consensus 407 Glq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~~l~~~ 486 (717)
..-++.|+++|++++|+..-..|.--|..-..|. +..+.+.|..-++||.++||++|+|.|+.+.|+..+.+..
T Consensus 37 ~~vIk~MqVRGAPaIAivg~Lslaveiq~~~~~~----~ds~~~~i~~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~-- 110 (354)
T KOG1468|consen 37 WAVIKSMQVRGAPAIAIVGSLSLAVEIQKKGFPG----SDSLKEFIINKLNFLVSSRPTAVNLANAANELKPIAASED-- 110 (354)
T ss_pred HHHHHHHhhcCccHHHHHHHHHHHHHHhhccCCc----hHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhhh--
Confidence 3557899999999999876655554444322232 2347788889999999999999999999999999887653
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----C-C-CeEEEecCc--------hHHHHHHHHHHHcCCee
Q psy17541 487 ITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLA----N-D-DVILTYGCS--------SLVEKILLTAHEKGTKF 552 (717)
Q Consensus 487 ~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~----d-G-dvILTyg~S--------StV~~vL~~A~e~Gk~F 552 (717)
.++...++.+++..++++.+++. -+..|+.++..++. + | -+|||||+. .+.+++++..|..|+.-
T Consensus 111 ~~~~~~~~~~~~~~e~ml~~dl~-~N~~ig~~g~~~Llq~~~~~~kltVlThCNTGSLATagyGTALGVIRsLh~~grLe 189 (354)
T KOG1468|consen 111 KSEKAKREKCISYTEDMLEKDLA-DNRAIGDNGAKELLQAVKDKGKLTVLTHCNTGSLATAGYGTALGVIRSLHSLGRLE 189 (354)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHhcCCCCceEEEEeecCCchhhcccchHHHHHHHHHhcCCcc
Confidence 34466778899999998865544 68899999988763 2 2 389999653 24699999999999999
Q ss_pred EEEEcCCCCchhH-HHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCc
Q psy17541 553 RVIIVDGSPWYEG-KEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVP 629 (717)
Q Consensus 553 rVIVvESRP~~EG-r~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VP 629 (717)
+|||+|+||++|| |++|.+|.-..||.|+|+||+++++|+ .||.||+|||+|..||+..||+|||++|++|||||||
T Consensus 190 hvyctETRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~~~~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgip 269 (354)
T KOG1468|consen 190 HVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMKNHQVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIP 269 (354)
T ss_pred eEEecccccCCcccchhhHHHHhccCcchhhhhHHHHHHHhcCCCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCc
Confidence 9999999999999 899999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred EEecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCCh
Q psy17541 630 VLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSV 705 (717)
Q Consensus 630 VyV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSV 705 (717)
|||+++...++....+++.+.+|.|+|.|+....+-.......+++.||||.||+||++|||+||||.|+++|...
T Consensus 270 FyvaaP~tsid~~l~tG~eIiIEERp~~Em~~v~gg~~v~Iaapgi~vwnPAFDvTPa~LItgIiTe~g~f~~~~~ 345 (354)
T KOG1468|consen 270 FYVAAPFTSIDLSLATGDEIIIEERPPAEMTHVTGGEGVRIAAPGINVWNPAFDVTPAELITGIITEKGVFTPEEL 345 (354)
T ss_pred eEEeccccccccccCCCCeeEEeecCchHheeecCCcceEecCCCCCccCccccCCHHHHHHHHhhhccccChHHh
Confidence 9999999999999899999999999999999876544444567899999999999999999999999999998654
No 19
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=97.69 E-value=0.0003 Score=73.43 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHh-CC-CcEEEEc-----
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK-HQ-VDCSYVL----- 583 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~-~G-I~vTyI~----- 583 (717)
..+.|+..|+.+|.+||+|+. +.|+++..+...... ...+.|+- -+...+..|.+ .+ +.+.++-
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIfl-d~GtT~~~la~~L~~-~~~ltVvT-------nsl~ia~~l~~~~~~~~v~l~GG~~~~ 147 (256)
T PRK10434 77 KKELIAEAAVSLIHDGDSIIL-DAGSTVLQMVPLLSR-FNNITVMT-------NSLHIVNALSELDNEQTILMPGGTFRK 147 (256)
T ss_pred HHHHHHHHHHhhCCCCCEEEE-cCcHHHHHHHHHhcc-CCCeEEEE-------CCHHHHHHHhhCCCCCEEEEECCEEeC
Confidence 468899999999999999985 555665666655532 22355542 12345667765 22 4544321
Q ss_pred --chHHHH----Hhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 584 --LSAVSY----IMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 584 --DSAVsy----iM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
.+.+|. .+. .+|++|+|+++|..+|++...--.+.+--++-....-+|++|++-||...
T Consensus 148 ~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~~~ 214 (256)
T PRK10434 148 KSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRK 214 (256)
T ss_pred CCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccCCc
Confidence 111222 222 59999999999998877764332344555555578889999999999764
No 20
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.62 E-value=0.00066 Score=70.07 Aligned_cols=120 Identities=11% Similarity=0.065 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCe-eEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHH
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTK-FRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSY 589 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~-FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsy 589 (717)
..+.|+..|+++|.+|++| -+|.++|+..++....+..+. +.+.++-+ ...++..|.+.||++..+-+
T Consensus 6 ~K~~IA~~Aa~lI~dg~~I-gLgsGST~~~l~~~L~~~~~~~~~itvVt~-----S~~~a~~l~~~gi~v~~l~~----- 74 (220)
T PRK00702 6 LKKAAAEAAAEYVEDGMIV-GLGTGSTAAYFIDALGERVKEGLIIGGVPT-----SEASTELAKELGIPLFDLNE----- 74 (220)
T ss_pred HHHHHHHHHHHhCCCCCEE-EECCcHHHHHHHHHHHhhhccCCCEEEECC-----cHHHHHHHHhCCCeEEcHHH-----
Confidence 4678999999999999986 567788877777766432210 22333222 23456677778988652211
Q ss_pred HhhhccEEEEceeeEecCCCeecccchHHH--HHHHHhCCCcEEecccCCcccccc
Q psy17541 590 IMREVSKVIIGAHALLSNGAVMSRAGTAQV--SLVARAFNVPVLAACETHKFCERV 643 (717)
Q Consensus 590 iM~~VdkVLLGAdaVlaNG~VvNKiGT~~V--ALaAK~~~VPVyV~cEtyKFs~rv 643 (717)
+.++|..|.|||.|-.+++++---|-+.+ -++|...+ -+|+++...||.++.
T Consensus 75 -~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~l 128 (220)
T PRK00702 75 -VDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVL 128 (220)
T ss_pred -CCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhc
Confidence 34799999999999999887777555544 45555544 489999999998864
No 21
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.54 E-value=0.001 Score=68.67 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=78.0
Q ss_pred HHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCC--eeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHH
Q psy17541 513 NAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGT--KFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYI 590 (717)
Q Consensus 513 e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk--~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyi 590 (717)
+.|+..|.++|++|++|. ++.|+|+..++....+..+ .+.+.|+=+ +..++..|.+.||++..+ .-
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~~~~~L~~~~~~~~l~itvVt~-----S~~~a~~l~~~gi~v~~l------~~ 70 (218)
T TIGR00021 3 RAAAEAAAEYVEDGMVVG-LGTGSTVAYFIEALGERVKQEGLDIVGVPT-----SKQTAELARELGIPLSSL------DE 70 (218)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhhccCCCEEEEeC-----CHHHHHHHHHCCCCEEcH------hH
Confidence 578999999999999874 6777777777666654322 123333222 245677787889987511 12
Q ss_pred hhhccEEEEceeeEecCCCeecccchHHH-H-HHHHhCCCcEEecccCCcccccc
Q psy17541 591 MREVSKVIIGAHALLSNGAVMSRAGTAQV-S-LVARAFNVPVLAACETHKFCERV 643 (717)
Q Consensus 591 M~~VdkVLLGAdaVlaNG~VvNKiGT~~V-A-LaAK~~~VPVyV~cEtyKFs~rv 643 (717)
+.++|..|.|||.|-.+++++---|.+.+ - ++|. ...-+|+++.+.||.++.
T Consensus 71 ~~~iDiafdGaD~id~~~~~ikg~g~a~~~eKiia~-~A~~~i~l~D~sK~~~~l 124 (218)
T TIGR00021 71 VPELDLAIDGADEVDPNLQLIKGGGGALLREKIVAS-ASKRFIVIADESKLVDKL 124 (218)
T ss_pred CCccCEEEECCCeECCCCCEecccHHHHHHHHHHHH-hhCcEEEEEEchhhhccc
Confidence 34799999999999999888533333322 1 3332 334789999999998764
No 22
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.45 E-value=0.0011 Score=67.71 Aligned_cols=118 Identities=13% Similarity=0.066 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcC----CeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHH
Q psy17541 512 GNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKG----TKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAV 587 (717)
Q Consensus 512 ~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~G----k~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAV 587 (717)
.+.|++.|+++|.+|++|. +|.|+|+..++....+.. ..++|+ +-| ..++..|...|+++..+-
T Consensus 2 K~~IA~~A~~~I~~g~~I~-ldsGST~~~l~~~L~~~~~~~~~~itvV-TnS------~~~a~~l~~~~i~vi~lg---- 69 (213)
T cd01398 2 KRAAARAAVDYVEDGMVIG-LGTGSTVAYFIEALGERVREEGLNIVGV-PTS------FQTEELARELGIPLTDLD---- 69 (213)
T ss_pred HHHHHHHHHHhCCCCCEEE-ECchHHHHHHHHHHHHhhhccCCCEEEE-eCc------HHHHHHHHhCCCeEEeCC----
Confidence 3578999999999999765 577777777776664331 244443 222 235566666788765443
Q ss_pred HHHhhhccEEEEceeeEecCCCeecccchHHHHH-HHHhCCCcEEecccCCcccccc
Q psy17541 588 SYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSL-VARAFNVPVLAACETHKFCERV 643 (717)
Q Consensus 588 syiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VAL-aAK~~~VPVyV~cEtyKFs~rv 643 (717)
-.-++|++|+|||.|-.++.++.--|-+.+-- +......-+|+++...||..+.
T Consensus 70 --~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l 124 (213)
T cd01398 70 --EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERL 124 (213)
T ss_pred --CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccC
Confidence 12269999999999998876554444433331 1223455789999999998864
No 23
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=97.33 E-value=0.0014 Score=68.44 Aligned_cols=121 Identities=11% Similarity=0.036 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhC-CCcEEEE-------
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKH-QVDCSYV------- 582 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~-GI~vTyI------- 582 (717)
..+.|+..|+.+|.|||+|+.- .|+|+..+...... +.++|+- - +...|..|.+. ++++.++
T Consensus 79 ~K~~IA~~Aa~~I~~g~~Ifld-~GsT~~~la~~L~~--~~ltVvT-n------sl~ia~~l~~~~~~~v~l~GG~~~~~ 148 (251)
T PRK13509 79 EKVRIAKAASQLCNPGESVVIN-CGSTAFLLGRELCG--KPVQIIT-N------YLPLANYLIDQEHDSVIIMGGQYNKS 148 (251)
T ss_pred HHHHHHHHHHHhCCCCCEEEEC-CcHHHHHHHHHhCC--CCeEEEe-C------CHHHHHHHHhCCCCEEEEECCeEcCC
Confidence 4678999999999999988865 45555655555532 3444442 2 23456666643 3443321
Q ss_pred ----cchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 583 ----LLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 583 ----~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
.... ...|. .+|+.|+||++|-.+|-...-.....+--.+-....-+|++|++.||...
T Consensus 149 ~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~~ 213 (251)
T PRK13509 149 QSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGER 213 (251)
T ss_pred cceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCce
Confidence 1112 23444 48999999999987764444444455444444556788999999999764
No 24
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=97.31 E-value=0.0019 Score=63.13 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhC-CCcEEEEc------
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKH-QVDCSYVL------ 583 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~-GI~vTyI~------ 583 (717)
..++|+..|+++|++|++|+.= .|+++..+...... ..++.|+- - ....+..|.+. ++++.++-
T Consensus 5 ~K~~IA~~A~~~I~~~~~Ifld-~GtT~~~la~~L~~-~~~ltVvT-n------sl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 5 EKRAIARKAASLIEDGDTIFLD-SGTTTLELAKYLPD-KKNLTVVT-N------SLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred HHHHHHHHHHHhCCCCCEEEEE-CchHHHHHHHHhhc-CCceEEEE-C------CHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 4678999999999999997754 55555666666542 22455542 2 23466777765 34333211
Q ss_pred -----chHHHHHhh--hccEEEEceeeEecCCCee-cccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 584 -----LSAVSYIMR--EVSKVIIGAHALLSNGAVM-SRAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 584 -----DSAVsyiM~--~VdkVLLGAdaVlaNG~Vv-NKiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
....-..|. ++|+.|+|+++|..++++. .-..-+.+--+.-...--+|+++++.||...
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~~ 142 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGRN 142 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCCe
Confidence 111112222 6999999999999965554 5555666666666677789999999999763
No 25
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=97.25 E-value=0.0056 Score=64.63 Aligned_cols=123 Identities=10% Similarity=0.104 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHh-CCCcEEEEc------
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK-HQVDCSYVL------ 583 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~-~GI~vTyI~------ 583 (717)
..+.|+..|+.+|.|||+|+.= .|+++..+..... ..+.++||- - +...+..|.. .++++.++-
T Consensus 92 ~K~~IA~~Aa~~I~dgd~Ifld-~GtT~~~la~~L~-~~~~ltVvT-n------sl~ia~~l~~~~~~~v~llGG~~~~~ 162 (269)
T PRK09802 92 MKRSVAKAAVELIQPGHRVILD-SGTTTFEIARLMR-KHTDVIAMT-N------GMNVANALLEAEGVELLMTGGHLRRQ 162 (269)
T ss_pred HHHHHHHHHHhhCCCCCEEEEC-CchHHHHHHHhcC-cCCCeEEEe-C------CHHHHHHHHhCCCCEEEEECCEEecC
Confidence 4578999999999999999855 4555555555552 233466663 1 2345667764 356554321
Q ss_pred -----chHHHHHhh--hccEEEEceeeEecCCCeec-ccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 584 -----LSAVSYIMR--EVSKVIIGAHALLSNGAVMS-RAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 584 -----DSAVsyiM~--~VdkVLLGAdaVlaNG~VvN-KiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
....-..+. .+|+.||||++|-.++++.. -.--+.+--++-...--+|++|++.||...
T Consensus 163 ~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~~~ 229 (269)
T PRK09802 163 SQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRS 229 (269)
T ss_pred CCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccCCc
Confidence 111112223 69999999999988777654 444455555555566777999999999653
No 26
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=97.12 E-value=0.0052 Score=64.31 Aligned_cols=123 Identities=10% Similarity=0.117 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHh-CCCcEEEE-------
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK-HQVDCSYV------- 582 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~-~GI~vTyI------- 582 (717)
..+.|+..|+.+|.+||+|+.-+.|+ +..++.... ..+.+.|+ +- +...+..|.. .++.+.++
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIflD~GtT-~~~la~~L~-~~~~ltVv-TN------sl~ia~~l~~~~~~~villGG~~~~~ 147 (252)
T PRK10906 77 EKERIARKVASQIPNGATLFIDIGTT-PEAVAHALL-NHSNLRIV-TN------NLNVANTLMAKEDFRIILAGGELRSR 147 (252)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCcHH-HHHHHHHhc-CCCCcEEE-EC------cHHHHHHHhhCCCCEEEEECCEEecC
Confidence 45789999999999999998655544 455555553 22345554 22 2345666664 34444322
Q ss_pred cchHHHHH----hh--hccEEEEceeeEecCCCee-cccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 583 LLSAVSYI----MR--EVSKVIIGAHALLSNGAVM-SRAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 583 ~DSAVsyi----M~--~VdkVLLGAdaVlaNG~Vv-NKiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
..+.+|.. +. .+|+.|||+++|-.+|++. +-..-+.+--.+-....-+|++|++.||...
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~~ 214 (252)
T PRK10906 148 DGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRN 214 (252)
T ss_pred CCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCCc
Confidence 11222222 22 5999999999999776654 4445555655555566788999999999653
No 27
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=97.01 E-value=0.012 Score=61.09 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHh-CCCcEEEE-------
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK-HQVDCSYV------- 582 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~-~GI~vTyI------- 582 (717)
..+.|+..|+++|++||+|+.= .|+++..+...... +.++|+- - +...+..|.. .++.+.++
T Consensus 79 ~K~~IA~~Aa~lI~~gd~Ifld-~GtT~~~l~~~L~~--~~ltVvT-N------s~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 79 HKADIAREALAWIEEGMVIALD-ASSTCWYLARQLPD--INIQVFT-N------SHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHhCCCCCEEEEc-CcHHHHHHHHhhCC--CCeEEEe-C------CHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 4678999999999999988754 55555555555532 2455542 1 2345566654 34544221
Q ss_pred ----cchHHHHHhh--hccEEEEceeeEecCCCeec-ccchHHHHHHHHhCCCcEEecccCCcccc
Q psy17541 583 ----LLSAVSYIMR--EVSKVIIGAHALLSNGAVMS-RAGTAQVSLVARAFNVPVLAACETHKFCE 641 (717)
Q Consensus 583 ----~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvN-KiGT~~VALaAK~~~VPVyV~cEtyKFs~ 641 (717)
.....-..+. .+|++|+|+++|..+|++.. -.=.+.+--.+-....-+|+++++.||..
T Consensus 149 ~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~ 214 (240)
T PRK10411 149 YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNR 214 (240)
T ss_pred CCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCC
Confidence 1111111222 69999999999987766664 44445555555566777899999999975
No 28
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.011 Score=61.97 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc------
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL------ 584 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D------ 584 (717)
....|+..|+.+|+|||+|+--+-|.+ ..+..... ....++|+. -+...+..|.... .+++|+.
T Consensus 77 eK~~IA~~Aa~lI~~g~~ifld~GTT~-~~la~~L~-~~~~ltviT-------Nsl~ia~~l~~~~-~~~vi~~GG~~~~ 146 (253)
T COG1349 77 EKRAIAKAAATLIEDGDTIFLDAGTTT-LALARALP-DDNNLTVIT-------NSLNIAAALLEKP-NIEVILLGGTVRK 146 (253)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcHH-HHHHHHhC-cCCCeEEEe-------CCHHHHHHHHhCC-CCeEEEeCcEEEc
Confidence 467899999999999999887655554 44444432 233366653 2445677777654 3333221
Q ss_pred -------hHHHHHhh--hccEEEEceeeEecCCCeeccc-chHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 585 -------SAVSYIMR--EVSKVIIGAHALLSNGAVMSRA-GTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 585 -------SAVsyiM~--~VdkVLLGAdaVlaNG~VvNKi-GT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
...-..+. .+|++|+|+++|..++++...- .-+.+.-.+-....-+|+++.+.||...
T Consensus 147 ~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~~ 214 (253)
T COG1349 147 KSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGRV 214 (253)
T ss_pred CCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCCc
Confidence 11222233 6999999999999888777655 4444555555567778899999999764
No 29
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=96.25 E-value=0.067 Score=55.90 Aligned_cols=122 Identities=7% Similarity=-0.019 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhC-CCcEEEEc------
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKH-QVDCSYVL------ 583 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~-GI~vTyI~------ 583 (717)
..+.|+..|+.+|.+|++|+.=+.|++ ..+..... ....+.|+- - +...+..|... ++.+.++-
T Consensus 78 ~K~~IA~~Aa~lI~~g~tIflD~GtT~-~~la~~L~-~~~~ltvvT-n------sl~i~~~l~~~~~~~villGG~~~~~ 148 (252)
T PRK10681 78 EKRRAAQLAATLVEPNQTLFFDCGTTT-PWIIEAID-NELPFTAVC-Y------SLNTFLALQEKPHCRAILCGGEFHAS 148 (252)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCccH-HHHHHhcC-CCCCeEEEE-C------CHHHHHHHhhCCCCEEEEECcEEecC
Confidence 367899999999999999997665554 44444442 112344442 2 23345666643 44433221
Q ss_pred -chHHH----HHhh--hccEEEEceeeEecCCCee-cccchHHHHHHHHhCCCcEEecccCCcccc
Q psy17541 584 -LSAVS----YIMR--EVSKVIIGAHALLSNGAVM-SRAGTAQVSLVARAFNVPVLAACETHKFCE 641 (717)
Q Consensus 584 -DSAVs----yiM~--~VdkVLLGAdaVlaNG~Vv-NKiGT~~VALaAK~~~VPVyV~cEtyKFs~ 641 (717)
.+.++ ..+. .+|+.|||+++|...+++. .-..-+.+.-+.-....-+|++|.+.||..
T Consensus 149 ~~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~ 214 (252)
T PRK10681 149 NAIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGK 214 (252)
T ss_pred cceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCc
Confidence 01111 1222 6999999999998776654 444545555555556777899999999965
No 30
>PLN02384 ribose-5-phosphate isomerase
Probab=95.02 E-value=0.38 Score=51.46 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCe--eE-EEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHH
Q psy17541 512 GNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTK--FR-VIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVS 588 (717)
Q Consensus 512 ~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~--Fr-VIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVs 588 (717)
.+..+..|.++|++|.+ +=.|..|||..++....+..+. +. +.++-|. ..++..+.+.||++.-+.+
T Consensus 36 K~~aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS-----~~T~~~a~~~GIpl~~l~~---- 105 (264)
T PLN02384 36 KKIAAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS-----KKTHEQAVSLGIPLSDLDS---- 105 (264)
T ss_pred HHHHHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcCc-----HHHHHHHHHcCCcEecccc----
Confidence 34456667889999876 6778899988888766543322 32 4444332 3566777788999776554
Q ss_pred HHhhhccEEEEceeeEecCCCeecccchHHHH--HHHHhCCCcEEecccCCcccccc
Q psy17541 589 YIMREVSKVIIGAHALLSNGAVMSRAGTAQVS--LVARAFNVPVLAACETHKFCERV 643 (717)
Q Consensus 589 yiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VA--LaAK~~~VPVyV~cEtyKFs~rv 643 (717)
..++|..|=|||-|-.|+.++=-=|.+.+- ++|... .-|++++...|+.++.
T Consensus 106 --v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~A-~~~IiI~DesK~V~~L 159 (264)
T PLN02384 106 --HPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGAC-KKFVVIVDESKLVKHI 159 (264)
T ss_pred --CCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHhc-CeEEEEEeCcceeccc
Confidence 567999999999999998777666644322 233332 3678888889998753
No 31
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=93.98 E-value=0.67 Score=48.61 Aligned_cols=119 Identities=12% Similarity=0.077 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCC--eeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHH
Q psy17541 512 GNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGT--KFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSY 589 (717)
Q Consensus 512 ~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk--~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsy 589 (717)
.+..+..|+++|++|.+ +=.|..|||..++....+..+ .++|.++-|. ..+...+.+.|||+.-+.+
T Consensus 8 K~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS-----~~t~~~a~~~Gipl~~l~~----- 76 (228)
T PRK13978 8 KLMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCTS-----NKIAFLAKELGIKICEIND----- 76 (228)
T ss_pred HHHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeCc-----HHHHHHHHHcCCcEechhh-----
Confidence 45567778899999876 778899998888876654322 2455544332 2455667788999766544
Q ss_pred HhhhccEEEEceeeEecCCCeecccchHHHH--HHHHhCCCcEEecccCCcccccc
Q psy17541 590 IMREVSKVIIGAHALLSNGAVMSRAGTAQVS--LVARAFNVPVLAACETHKFCERV 643 (717)
Q Consensus 590 iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VA--LaAK~~~VPVyV~cEtyKFs~rv 643 (717)
..++|..|=|||-|-.|+.++--=|.+.+= ++|.. ..-|+|++...|+.++.
T Consensus 77 -~~~iDiaiDGADevd~~lnlIKGgGgal~rEKiva~~-A~~~iii~D~sK~v~~L 130 (228)
T PRK13978 77 -VDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEM-ASRFVVVVDETKIVQYL 130 (228)
T ss_pred -CCceeEEEecCceecCCccEEecCcHHHHHHHHHHHh-cCcEEEEEeCcceeccc
Confidence 357999999999999998877555543311 23332 23678888889998753
No 32
>KOG0259|consensus
Probab=92.02 E-value=1.1 Score=50.33 Aligned_cols=116 Identities=23% Similarity=0.316 Sum_probs=80.2
Q ss_pred HHHHHHHHHHH----hhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHH-hCCCcEEEE--
Q psy17541 510 MAGNAICMFFH----NKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLV-KHQVDCSYV-- 582 (717)
Q Consensus 510 ~A~e~Ia~~A~----e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~-~~GI~vTyI-- 582 (717)
.|+++|+++.. .+|...||+||-|+|..++-+|...+..|-++ +=-||++-=. ..+. -.||.|.|.
T Consensus 107 ~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNI----LlPrPGfp~Y---~~~a~~~~lEVR~ydl 179 (447)
T KOG0259|consen 107 PARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANI----LLPRPGFPLY---DTRAIYSGLEVRYYDL 179 (447)
T ss_pred HHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCce----ecCCCCCchH---HHhhhhcCceeEeecc
Confidence 36666776643 25778899999999999998888776655542 2357766522 2222 268888774
Q ss_pred --------cchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 583 --------LLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 583 --------~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
-..++-++..+=++.++=-.==-.+|.|+++----.||-+|+.++++|+.
T Consensus 180 LPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 180 LPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred cCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 34677777776444443222223579999999999999999999999874
No 33
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.60 E-value=5.7 Score=41.90 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHH--cCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHH
Q psy17541 512 GNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHE--KGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSY 589 (717)
Q Consensus 512 ~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e--~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsy 589 (717)
.+..+..|++++.+ ..|+=.|..|||..|+....+ .+. +.+..+-|. ..+...+.+.||++..+.+
T Consensus 7 K~~aa~~A~~~v~~-gmviGlGTGST~~~fI~~Lg~~~~~e-~~i~~V~TS-----~~t~~l~~~~GI~v~~l~~----- 74 (227)
T COG0120 7 KKAAAKAALEYVKD-GMVIGLGTGSTAAYFIEALGRRVKGE-LDIGGVPTS-----FQTEELARELGIPVSSLNE----- 74 (227)
T ss_pred HHHHHHHHHHHhcC-CCEEEEcCcHHHHHHHHHHHHhhccC-ccEEEEeCC-----HHHHHHHHHcCCeecCccc-----
Confidence 45566778889988 556678899999999988753 222 455544432 4677888899998877665
Q ss_pred HhhhccEEEEceeeEecCCCeecccchHHHH--HHHHhCCCcEEecccCCcccccc
Q psy17541 590 IMREVSKVIIGAHALLSNGAVMSRAGTAQVS--LVARAFNVPVLAACETHKFCERV 643 (717)
Q Consensus 590 iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VA--LaAK~~~VPVyV~cEtyKFs~rv 643 (717)
...+|..|=|||-|-.++.++--=|.+.+= ++| +...-|+|++...|+.+..
T Consensus 75 -~~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva-~~ak~~IvIvDesKlV~~L 128 (227)
T COG0120 75 -VDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVA-SAAKRFIVIVDESKLVEVL 128 (227)
T ss_pred -cCccceEeecccccCCCCCEEccChHHHHHHHHHH-HhcCeEEEEEeCccchhhc
Confidence 456999999999999998777666655432 222 2356689999999997653
No 34
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.25 E-value=2 Score=38.57 Aligned_cols=95 Identities=17% Similarity=0.276 Sum_probs=65.1
Q ss_pred EEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHH----hhhccEEEEceeeE
Q psy17541 529 ILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYI----MREVSKVIIGAHAL 604 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyi----M~~VdkVLLGAdaV 604 (717)
|+..|++..-..++....+.+ +.|+++|..|.. ++.+.+.|+++.+..-.....+ +.+++.||+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~-----~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPER-----VEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHH-----HHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHH-----HHHHHhcccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 678899998788877776633 788999988754 6788899988666432222222 246787877765
Q ss_pred ecCCCeecccchHHHHHHHHh-CC-CcEEecccCCcc
Q psy17541 605 LSNGAVMSRAGTAQVSLVARA-FN-VPVLAACETHKF 639 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~-~~-VPVyV~cEtyKF 639 (717)
+......+++.|+. +. +++++.+.....
T Consensus 72 -------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 72 -------DDEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp -------SHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred -------CHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 66778999999998 33 677766555443
No 35
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=87.85 E-value=1.1 Score=47.11 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhccCCC-eEEEecCchHHHHHHHHHHH---cCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEE-----
Q psy17541 511 AGNAICMFFHNKLANDD-VILTYGCSSLVEKILLTAHE---KGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSY----- 581 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGd-vILTyg~SStV~~vL~~A~e---~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTy----- 581 (717)
.++.|+..++..|+||+ |.|=+|--+.|-+++.+-.+ +..+ -++-+...|.. |+.-+.-+..-+-+|+.
T Consensus 7 ~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~~~~~~~~sen-g~Lg~g~~p~~-~~~d~~linaG~~~vt~~pg~~ 84 (225)
T COG2057 7 EREMIAKRAARELKDGDYVNLGIGLPTLVANYAPEGMNVLLQSEN-GLLGVGPAPLP-GEEDADLINAGKQPVTALPGAS 84 (225)
T ss_pred hHHHHHHHHHHhccCCCEEEecCCchHHhHhhcccccceEEecCc-eeEEecCCCCC-CCCCcchhhCCCceeEecCCce
Confidence 57788889999999998 45667888888777763210 0011 12333333332 22222223333466666
Q ss_pred EcchHHHHHhh---hccEEEEceeeEecCCCeeccc----------chHHHHHHHHhCCCcEEecccCCcccccccCCcc
Q psy17541 582 VLLSAVSYIMR---EVSKVIIGAHALLSNGAVMSRA----------GTAQVSLVARAFNVPVLAACETHKFCERVQTDAL 648 (717)
Q Consensus 582 I~DSAVsyiM~---~VdkVLLGAdaVlaNG~VvNKi----------GT~~VALaAK~~~VPVyV~cEtyKFs~rv~~Ds~ 648 (717)
+.|++.++.|= ++|.-||||-=|-.+|.+.|-+ |+--++.-|+ .|||.-+..|=.
T Consensus 85 ~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~gak----kvii~m~H~~k~-------- 152 (225)
T COG2057 85 VFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGAK----KVIVVMEHTKKS-------- 152 (225)
T ss_pred EEchHHHHHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCCc----EEEEEeeeeccc--------
Confidence 67888888874 6999999999999999998854 3333332222 266665544321
Q ss_pred cccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCCh
Q psy17541 649 VFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSV 705 (717)
Q Consensus 649 v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSV 705 (717)
+.+ .++... .+=.|....++.||||+|||....-
T Consensus 153 -----g~~-ki~~~c-----------------tlplt~~~~v~~iiTdl~V~~~~~~ 186 (225)
T COG2057 153 -----GVG-KILKEC-----------------TLPLTGNGCVDRVITDLAVFEFDPG 186 (225)
T ss_pred -----CCC-cccCcc-----------------cccccCCCCceEEEeccEEEEecCC
Confidence 111 111110 1345667788899999999876543
No 36
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=87.81 E-value=22 Score=40.76 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCC-CchhH-HHHHHHHHhCCCcEEEEcc------hHHHHH
Q psy17541 519 FHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGS-PWYEG-KEMLRRLVKHQVDCSYVLL------SAVSYI 590 (717)
Q Consensus 519 A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESR-P~~EG-r~lA~~L~~~GI~vTyI~D------SAVsyi 590 (717)
.++++.-.+.+++-+.+..+..+| .++..|. +|||.+.. +...| ..+.+.+...|+.+.++.. ..+...
T Consensus 131 lA~l~gae~alvv~sg~aAi~l~l-~~l~~Gd--eVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~a 207 (454)
T TIGR00474 131 LCELTGAEDALVVNNNAAAVLLAL-NTLAKGK--EVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYEDA 207 (454)
T ss_pred HHHHhCCCcEEEECCHHHHHHHHH-HHhCCcC--EEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHHh
Confidence 334444335565544445554444 5554454 68887653 32223 3445667778999988842 123333
Q ss_pred hhh-ccEEEEceeeEec-CCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 591 MRE-VSKVIIGAHALLS-NGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 591 M~~-VdkVLLGAdaVla-NG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+.. ...|++-..+.+. +| ....+--..++-+||.||+||+|=+
T Consensus 208 I~~~T~lv~~~h~sN~~~~G-~~~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 208 ITENTALLLKVHTSNYRIVG-FTEEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred cCcCCEEEEEEccCcccccC-CCCCCCHHHHHHHHHHcCCeEEEEC
Confidence 433 3333433222221 23 1123446678999999999999943
No 37
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=86.46 E-value=10 Score=42.98 Aligned_cols=144 Identities=16% Similarity=0.119 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---------CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH
Q psy17541 495 RLKEVIATYIHEQVDMAGNAICMFFHNKLAND---------DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG 565 (717)
Q Consensus 495 ~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dG---------dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG 565 (717)
.+....+.|. .+|-..+......+.+.+.+. ..|..+.-+..+.+...-+...-...-+++-+|--++-+
T Consensus 183 ~~~~~~~~Y~-~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~ 261 (388)
T COG0426 183 ELLPDMRKYY-ANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKGKVDLIYDSMYGNTE 261 (388)
T ss_pred HHHHHHHHHH-HHhhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHHccCCcceEEEEEecccCCHH
Confidence 6666777776 567777777777887777652 233333344555555544433323323444455544444
Q ss_pred ---HHHHHHHHhCCCcEEEEcc--hHHHHHhh---hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 566 ---KEMLRRLVKHQVDCSYVLL--SAVSYIMR---EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 566 ---r~lA~~L~~~GI~vTyI~D--SAVsyiM~---~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
+.+++-|.+.|+.|.++-+ +..+.++. +++.++||.-.+ |+++.-.+++..--+.|..+.-...++.++|
T Consensus 262 ~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS~ 339 (388)
T COG0426 262 KMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLALAPKNKLAGVFGSY 339 (388)
T ss_pred HHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhccCcCceEEEEecc
Confidence 3567778889999888764 44788876 689999999887 6789999999999999999877777788888
Q ss_pred cccc
Q psy17541 638 KFCE 641 (717)
Q Consensus 638 KFs~ 641 (717)
=.+.
T Consensus 340 GW~g 343 (388)
T COG0426 340 GWSG 343 (388)
T ss_pred CCCC
Confidence 5543
No 38
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=81.99 E-value=3.3 Score=43.94 Aligned_cols=105 Identities=23% Similarity=0.191 Sum_probs=71.4
Q ss_pred ecCchHH-HHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCc----EEEEcchHHHHHhhhccEEEEceeeEec
Q psy17541 532 YGCSSLV-EKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVD----CSYVLLSAVSYIMREVSKVIIGAHALLS 606 (717)
Q Consensus 532 yg~SStV-~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~----vTyI~DSAVsyiM~~VdkVLLGAdaVla 606 (717)
.|-|..| ..++..+.+.|...+|.++|-++...- ...+...++. +-+....++..+|+.+|.||-=|..+..
T Consensus 3 TGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~ 79 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPP 79 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCCceEEEEccccccccc---chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccc
Confidence 3444433 455666667776567777775554432 2234444433 3333446788899999999988877766
Q ss_pred CC-------CeecccchHHHHHHHHhCCCcEEecccCCcc
Q psy17541 607 NG-------AVMSRAGTAQVSLVARAFNVPVLAACETHKF 639 (717)
Q Consensus 607 NG-------~VvNKiGT~~VALaAK~~~VPVyV~cEtyKF 639 (717)
.| .-+|--||-.|.-+|+.++|+.+|.+.|.-.
T Consensus 80 ~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~v 119 (280)
T PF01073_consen 80 WGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISV 119 (280)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcce
Confidence 66 2357799999999999999999998877653
No 39
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=81.95 E-value=18 Score=31.33 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCeeEEEEcCCCCch-----------hHHHHHHHHH----hCCCcEEEEc--chHHHHHh---h--hcc
Q psy17541 538 VEKILLTAHEKGTKFRVIIVDGSPWY-----------EGKEMLRRLV----KHQVDCSYVL--LSAVSYIM---R--EVS 595 (717)
Q Consensus 538 V~~vL~~A~e~Gk~FrVIVvESRP~~-----------EGr~lA~~L~----~~GI~vTyI~--DSAVsyiM---~--~Vd 595 (717)
+..++..|...+..+.++.+...+.. +++..+..+. ..|+++++.. ......++ . ++|
T Consensus 16 l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d 95 (130)
T cd00293 16 LRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGAD 95 (130)
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCC
Confidence 33344445455777776655433322 3344444444 3688876643 22223333 3 479
Q ss_pred EEEEceeeEecCCCeec-ccchHHHHHHHHhCCCcEEec
Q psy17541 596 KVIIGAHALLSNGAVMS-RAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvN-KiGT~~VALaAK~~~VPVyV~ 633 (717)
.|++|+..- +.+.. ..|+. .--+.+..++||+++
T Consensus 96 lvvig~~~~---~~~~~~~~~~~-~~~ll~~~~~pvliv 130 (130)
T cd00293 96 LIVMGSRGR---SGLRRLLLGSV-AERVLRHAPCPVLVV 130 (130)
T ss_pred EEEEcCCCC---CccceeeeccH-HHHHHhCCCCCEEeC
Confidence 999998653 33322 33443 334446688999874
No 40
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=81.82 E-value=18 Score=39.73 Aligned_cols=136 Identities=11% Similarity=0.127 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCC-------------eeEE
Q psy17541 488 TDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGT-------------KFRV 554 (717)
Q Consensus 488 s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk-------------~FrV 554 (717)
..+++.+.+.+.++.|.. .....+.+.+..++++.-..+++|-|.+..+..+|..+...|. ...|
T Consensus 25 ~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eV 102 (363)
T TIGR01437 25 VSDEVADAQKRGAQNYFE--IKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEV 102 (363)
T ss_pred CCHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceE
Confidence 356666777666666542 2223445555555555444678888888887777776665554 2367
Q ss_pred EEcCCCCchhHH--HHHHHHHhCCCcEEEEc------chHHHHHhh-hccEEEE-c-eeeEecCCCeecccchHHHHHHH
Q psy17541 555 IIVDGSPWYEGK--EMLRRLVKHQVDCSYVL------LSAVSYIMR-EVSKVII-G-AHALLSNGAVMSRAGTAQVSLVA 623 (717)
Q Consensus 555 IVvESRP~~EGr--~lA~~L~~~GI~vTyI~------DSAVsyiM~-~VdkVLL-G-AdaVlaNG~VvNKiGT~~VALaA 623 (717)
++ .+|.+... .....+.-.|....++. ...+...+. +...+++ - -+. ..|.+... -.++-+|
T Consensus 103 i~--~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~--~~g~~~~~---~~i~~~a 175 (363)
T TIGR01437 103 VL--PKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHC--VQKSMLSV---EDAAQVA 175 (363)
T ss_pred EE--ECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCC--CcCCcCCH---HHHHHHH
Confidence 77 34544321 12233444676665542 223444443 3322221 1 111 23444332 4688999
Q ss_pred HhCCCcEEe
Q psy17541 624 RAFNVPVLA 632 (717)
Q Consensus 624 K~~~VPVyV 632 (717)
+.||+||+|
T Consensus 176 ~~~gi~viv 184 (363)
T TIGR01437 176 QEHNLPLIV 184 (363)
T ss_pred HHcCCeEEE
Confidence 999999987
No 41
>PRK04311 selenocysteine synthase; Provisional
Probab=80.91 E-value=53 Score=37.94 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=59.9
Q ss_pred HHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCC-CchhH-HHHHHHHHhCCCcEEEEcch------HHHHH
Q psy17541 519 FHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGS-PWYEG-KEMLRRLVKHQVDCSYVLLS------AVSYI 590 (717)
Q Consensus 519 A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESR-P~~EG-r~lA~~L~~~GI~vTyI~DS------AVsyi 590 (717)
.++++.-.+.++|-+.+..+..+| .++..|. +|||.+.. +..-| ..+-+.+...|+.+.++... .+...
T Consensus 136 lA~l~Gae~a~vv~sgtaAl~l~l-~~l~~Gd--eVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~a 212 (464)
T PRK04311 136 LCALTGAEDALVVNNNAAAVLLAL-NALAAGK--EVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQA 212 (464)
T ss_pred HHHHhCCCeEEEECCHHHHHHHHH-HHhCCCC--EEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHHh
Confidence 334443335666666555555445 5554444 68886542 21122 33445667789988777521 23334
Q ss_pred hhhccEEEEceee-Eec-CCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 591 MREVSKVIIGAHA-LLS-NGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 591 M~~VdkVLLGAda-Vla-NG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+..=+++++-.|. -+. .| ....+--..++-+||.||+||+|=+
T Consensus 213 I~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 213 INENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred cCccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 4332333333222 111 22 1223445668899999999999954
No 42
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=78.82 E-value=21 Score=32.98 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=37.8
Q ss_pred HHhCCCcEEEEcc---hHHHHHhh-----hccEEEEceeeEecCCCeecc-cchHHHHHHHHhCC--CcEEecc
Q psy17541 572 LVKHQVDCSYVLL---SAVSYIMR-----EVSKVIIGAHALLSNGAVMSR-AGTAQVSLVARAFN--VPVLAAC 634 (717)
Q Consensus 572 L~~~GI~vTyI~D---SAVsyiM~-----~VdkVLLGAdaVlaNG~VvNK-iGT~~VALaAK~~~--VPVyV~c 634 (717)
+...|+++..+.. +...-++. ++|.|++|++.- |++... .|+....-+.++.. +||+|+.
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 3456777655442 32333332 589999999875 334322 36555667778888 9999975
No 43
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=78.29 E-value=23 Score=32.65 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=53.9
Q ss_pred CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc------h-HHHHHhh--hccEEEEceeeEecCCCe--ecccchH
Q psy17541 549 GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL------S-AVSYIMR--EVSKVIIGAHALLSNGAV--MSRAGTA 617 (717)
Q Consensus 549 Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D------S-AVsyiM~--~VdkVLLGAdaVlaNG~V--vNKiGT~ 617 (717)
...|++|.+++ +++.|.+.||+|+.+.. . .+..+.. ++|+||-= .+|.- -.....+
T Consensus 23 ~~G~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~-----~~~~~~~~~~~dg~ 89 (112)
T cd00532 23 SDGFPLFATGG--------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINL-----RDPRRDRCTDEDGT 89 (112)
T ss_pred HCCCEEEECcH--------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEc-----CCCCcccccCCChH
Confidence 35689998764 78899999999998732 2 3444544 58888653 23332 1255668
Q ss_pred HHHHHHHhCCCcEEecccCCcc
Q psy17541 618 QVSLVARAFNVPVLAACETHKF 639 (717)
Q Consensus 618 ~VALaAK~~~VPVyV~cEtyKF 639 (717)
.+=-+|-.++||++.-..+..|
T Consensus 90 ~iRR~A~~~~Ip~~T~~~ta~~ 111 (112)
T cd00532 90 ALLRLARLYKIPVTTPNATAMF 111 (112)
T ss_pred HHHHHHHHcCCCEEECHHHHhh
Confidence 8888999999999986655543
No 44
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=78.27 E-value=32 Score=36.84 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=52.8
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcC--C-eeEEEEcCC-CCchhHHHHHHHHHhCCCcEEEEcch--------HHHHHhh
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKG--T-KFRVIIVDG-SPWYEGKEMLRRLVKHQVDCSYVLLS--------AVSYIMR 592 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~G--k-~FrVIVvES-RP~~EGr~lA~~L~~~GI~vTyI~DS--------AVsyiM~ 592 (717)
..++++|-|.+..+..+|......+ . +-.|++.+. .|.+- .....+...|+++.++... .+-..+.
T Consensus 59 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~--~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~ 136 (353)
T TIGR03235 59 TEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVL--EPIRALERNGFTVTYLPVDESGRIDVDELADAIR 136 (353)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHH--HHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC
Confidence 3467777766666555554433211 1 135555442 23221 2223455679999888632 2323332
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.-.++++=.+.-...|.+.. + ..|+-+|+.++++|+|
T Consensus 137 ~~~~lv~~~~~~n~tG~~~~-~--~~I~~l~~~~~~~~iv 173 (353)
T TIGR03235 137 PDTLLVSIMHVNNETGSIQP-I--REIAEVLEAHEAFFHV 173 (353)
T ss_pred CCCEEEEEEcccCCceeccC-H--HHHHHHHHHcCCEEEE
Confidence 21233322222223444433 2 5688889999998887
No 45
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.94 E-value=11 Score=42.67 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=48.4
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEce
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
.|..|+++|.+.+=+.+...+.+.| ++|.++|.++......+...|.+.||.+.+-.... ....+|.||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 4678999988866455555555555 57899998886555667788999998875422222 234577777765
No 46
>PLN02651 cysteine desulfurase
Probab=76.67 E-value=43 Score=36.23 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHH--cCCeeEEEEcCCC-CchhHHHHHHHHHhCCCcEEEEcch--
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHE--KGTKFRVIIVDGS-PWYEGKEMLRRLVKHQVDCSYVLLS-- 585 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e--~Gk~FrVIVvESR-P~~EGr~lA~~L~~~GI~vTyI~DS-- 585 (717)
+++.|++..- ...+.+++|-|.|..+..+|..+.. .+..-+|++.+.. |.+. .....|...|+++.++...
T Consensus 48 ~r~~la~~~g--~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~--~~~~~~~~~g~~v~~v~~~~~ 123 (364)
T PLN02651 48 ARAQVAALIG--ADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVL--DSCRHLQQEGFEVTYLPVKSD 123 (364)
T ss_pred HHHHHHHHhC--CCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHH--HHHHHHHhcCCEEEEEccCCC
Confidence 4455554321 2344678887766655444443322 1222367765432 2221 2234455789998887531
Q ss_pred ------HHHHHhh-hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 586 ------AVSYIMR-EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 586 ------AVsyiM~-~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+-..+. +...|++ .+.-...|.+.. + ..|+-+||.+|++|+|
T Consensus 124 ~~~d~~~l~~~i~~~t~lv~v-~~~~n~tG~~~~-l--~~I~~~~~~~g~~~~v 173 (364)
T PLN02651 124 GLVDLDELAAAIRPDTALVSV-MAVNNEIGVIQP-V--EEIGELCREKKVLFHT 173 (364)
T ss_pred CcCCHHHHHHhcCCCcEEEEE-ECCCCCceeccc-H--HHHHHHHHHcCCEEEE
Confidence 2333333 3334433 222223443332 2 3588899999998877
No 47
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=76.53 E-value=23 Score=32.16 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=59.9
Q ss_pred CCeEEEecCchH--HHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-----hHHHHHhh--hccE
Q psy17541 526 DDVILTYGCSSL--VEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-----SAVSYIMR--EVSK 596 (717)
Q Consensus 526 GdvILTyg~SSt--V~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-----SAVsyiM~--~Vdk 596 (717)
|.++++++-+.- ...+....+. ..|++|.+++ +++.|.+.||+|+.+.. ..+..++. ++|.
T Consensus 1 g~vl~s~~~~~k~~~~~~~~~l~~--~G~~l~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~ 70 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAE--LGFKLVATEG--------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQL 70 (110)
T ss_pred CeEEEEEEcCcHhHHHHHHHHHHH--CCCEEEEchH--------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEE
Confidence 346677765542 2333333333 4688887664 78889999999887643 33444443 6899
Q ss_pred EEEceeeEecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 597 VIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
|+--.+ +.- .....+.+=.+|-.||||++-..+
T Consensus 71 vIn~~~-----~~~-~~~~~~~iRR~Av~~~ipl~T~~~ 103 (110)
T cd01424 71 VINTPS-----GKR-AIRDGFSIRRAALEYKVPYFTTLD 103 (110)
T ss_pred EEECCC-----CCc-cCccHHHHHHHHHHhCCCEEecHH
Confidence 877542 221 123457888999999999995443
No 48
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.45 E-value=18 Score=40.33 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=55.4
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
.+.+|++.|.+..=+.+.+.+.+.| ..|++.|..+...=.....+|.+.|+.+.+ .......+...|.||+++..-
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEEECCCCC
Confidence 4678888898885444445555556 467777765422223345677778876332 222224556788888876432
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+ .++...|+++|+|++-
T Consensus 80 -~~---------~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 80 -LD---------SPPVVQAHKKGIEVIG 97 (450)
T ss_pred -CC---------CHHHHHHHHCCCcEEe
Confidence 21 2355566666666654
No 49
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=75.72 E-value=44 Score=34.98 Aligned_cols=54 Identities=7% Similarity=-0.043 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcee--eEecCCCeecccch
Q psy17541 563 YEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAH--ALLSNGAVMSRAGT 616 (717)
Q Consensus 563 ~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAd--aVlaNG~VvNKiGT 616 (717)
.+-...++.+.+.|+++..|+++.-+.+-+.+|.+|.... .....|.+-++++.
T Consensus 189 ~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~ 244 (278)
T PRK11557 189 RELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQATRSAAISSTHAQ 244 (278)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCCCCcccchHHHHHHHHH
Confidence 3345788899999999999999999999999999997542 22223344455443
No 50
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=75.33 E-value=21 Score=38.13 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=63.0
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-hHHHHHhhhccEEEEce
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-SAVSYIMREVSKVIIGA 601 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-SAVsyiM~~VdkVLLGA 601 (717)
+....+++|.|.+..+.. +..+...| +|++. .|.+.+... .+...|+++.++.| ..+-..+.+...|++ .
T Consensus 62 ~~~~~i~~t~G~~~~i~~-~~~~l~~g---~vl~~--~p~y~~~~~--~~~~~g~~~~~~~d~~~l~~~~~~~~~v~i-~ 132 (330)
T TIGR01140 62 LPAASVLPVNGAQEAIYL-LPRLLAPG---RVLVL--APTYSEYAR--AWRAAGHEVVELPDLDRLPAALEELDVLVL-C 132 (330)
T ss_pred CChhhEEECCCHHHHHHH-HHHHhCCC---eEEEe--CCCcHHHHH--HHHHcCCEEEEeCCHHHHHhhcccCCEEEE-e
Confidence 334568888877776554 44554333 45554 577776433 35678999999874 234444556665655 2
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+---.-|.++..-.=..++-+|+.++++|++
T Consensus 133 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 133 NPNNPTGRLIPPETLLALAARLRARGGWLVV 163 (330)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhHhcCCEEEE
Confidence 2223456666665566677888899997775
No 51
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=75.27 E-value=85 Score=32.21 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=25.8
Q ss_pred hhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 591 MREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 591 M~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
+..=|.+|+ |..+|.--+ ...++-.||.+|+|+++++..
T Consensus 107 ~~~gDvli~----iS~SG~s~~---v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 107 GHAGDVLLA----ISTRGNSRD---IVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred CCCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCEEEEEeCC
Confidence 445566654 334554222 456778899999999998864
No 52
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=74.88 E-value=38 Score=38.85 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=38.0
Q ss_pred hccEEEEcee-eEecCCCeecccchHHHHHHHHhCCCcEEecccCCcccccc
Q psy17541 593 EVSKVIIGAH-ALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERV 643 (717)
Q Consensus 593 ~VdkVLLGAd-aVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~rv 643 (717)
.+|..|.||+ +|..+|++++-.|....-+++ ..-.=+|++...-|+.+.+
T Consensus 181 ~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~ 231 (432)
T TIGR00273 181 SADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTF 231 (432)
T ss_pred cCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCH
Confidence 6899999999 999999999998888755554 3333345667777887764
No 53
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=74.80 E-value=49 Score=35.78 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=53.6
Q ss_pred CCCeEEEecCchHHHHHHHHHHH--cCCeeEEEEcCCCCchhHH-HHHHHHHhCCCcEEEEcch--------HHHHHhhh
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHE--KGTKFRVIIVDGSPWYEGK-EMLRRLVKHQVDCSYVLLS--------AVSYIMRE 593 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e--~Gk~FrVIVvESRP~~EGr-~lA~~L~~~GI~vTyI~DS--------AVsyiM~~ 593 (717)
...+++|.|-+..+..+|..+.. .+. -.|++.+. .+.+. .....+...|+.+.+++.. .+-..+..
T Consensus 59 ~~~i~~t~~~t~a~~~al~~~~~~~~~~-~~vv~~~~--~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~ 135 (379)
T TIGR03402 59 PDEIIFTSGGTESDNTAIKSALAAQPEK-RHIITTAV--EHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITD 135 (379)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhcCCC-CeEEEccc--ccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34578887777766655654432 222 23444332 22232 3344566689999888532 23333322
Q ss_pred ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 594 VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 594 VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
=+++++-.+.-...|.++ .+ ..|+-+|+.+|++|+|
T Consensus 136 ~~~lv~i~~~~n~tG~~~-~~--~~I~~l~~~~g~~viv 171 (379)
T TIGR03402 136 DTALVSVMWANNETGTIF-PI--EEIGEIAKERGALFHT 171 (379)
T ss_pred CcEEEEEEcccCCeeecc-cH--HHHHHHHHHcCCEEEE
Confidence 223333233222334333 33 3588899999998876
No 54
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=74.56 E-value=35 Score=36.57 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=55.3
Q ss_pred CeEEEecCchH-----HHHHHHHHH----HcCCeeEEEEcCCCCchhHHHHHHHHHhC-CCcEEEEcchHHHHHhhhccE
Q psy17541 527 DVILTYGCSSL-----VEKILLTAH----EKGTKFRVIIVDGSPWYEGKEMLRRLVKH-QVDCSYVLLSAVSYIMREVSK 596 (717)
Q Consensus 527 dvILTyg~SSt-----V~~vL~~A~----e~Gk~FrVIVvESRP~~EGr~lA~~L~~~-GI~vTyI~DSAVsyiM~~Vdk 596 (717)
.+|+.++.|+- ....|..|. +....++++++-..|.. -..+.+.+.+. |+.+.++. ..+..+|..+|.
T Consensus 187 ~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl 264 (380)
T PRK00025 187 RVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKR-REQIEEALAEYAGLEVTLLD-GQKREAMAAADA 264 (380)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhh-HHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE
Confidence 46777766642 123333433 23345666665322221 12333445556 78876654 578889999999
Q ss_pred EEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 597 VIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
+|+.+ |+..+ =|-.+|+|++++-..+
T Consensus 265 ~v~~s-------------G~~~l--Ea~a~G~PvI~~~~~~ 290 (380)
T PRK00025 265 ALAAS-------------GTVTL--ELALLKVPMVVGYKVS 290 (380)
T ss_pred EEECc-------------cHHHH--HHHHhCCCEEEEEccC
Confidence 98832 55443 5677899999975443
No 55
>KOG3075|consensus
Probab=74.30 E-value=21 Score=38.46 Aligned_cols=120 Identities=12% Similarity=0.021 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHH---HHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHH
Q psy17541 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKILLTA---HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAV 587 (717)
Q Consensus 511 A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A---~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAV 587 (717)
+.+.-+.++.+....+-.|+=+|..++|...+... +.+|..-+|+.+-+ +...+..+.+.||++.+...
T Consensus 27 ~kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPt-----s~~s~q~~~~~gi~l~~~d~--- 98 (261)
T KOG3075|consen 27 AKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPT-----SFRSAQLALEYGIPLSDLDS--- 98 (261)
T ss_pred HHHHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEeccc-----chhhHHHHHhcCCccccCCC---
Confidence 34444556666555566777888888877766655 44566556664433 34567888899999988775
Q ss_pred HHHhhhccEEEEceeeEecCCCeecccchHHH-HHHHHhCCCcEEecccCCcccc
Q psy17541 588 SYIMREVSKVIIGAHALLSNGAVMSRAGTAQV-SLVARAFNVPVLAACETHKFCE 641 (717)
Q Consensus 588 syiM~~VdkVLLGAdaVlaNG~VvNKiGT~~V-ALaAK~~~VPVyV~cEtyKFs~ 641 (717)
=+.+|+.|=|||-|-+|..++---|-... -..---....|||++...|++.
T Consensus 99 ---hp~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~ 150 (261)
T KOG3075|consen 99 ---HPVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSK 150 (261)
T ss_pred ---CceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccch
Confidence 24799999999999999987755554321 1222223456799999999884
No 56
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=74.21 E-value=40 Score=38.33 Aligned_cols=99 Identities=17% Similarity=0.281 Sum_probs=54.4
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEcch---HHHHHhhhccEEEEce
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVLLS---AVSYIMREVSKVIIGA 601 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~DS---AVsyiM~~VdkVLLGA 601 (717)
..|+|-+-+..+..+|......|. +|++... .+.| ..+.+.|...|+.++++... ++-..+..=+++|+--
T Consensus 81 ~av~~sSGt~Al~~al~~ll~~Gd--~Vi~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e 156 (433)
T PRK08134 81 GAIATASGQAALHLAIATLMGAGS--HIVASSA--LYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGE 156 (433)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEeCC--ccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 456666555665555554444454 5666533 3333 23345577789999888633 4444554333333322
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+..-.+.+.. --.|+-+|+.+|++|+|
T Consensus 157 -~~~np~g~v~D--i~~I~~la~~~gi~liv 184 (433)
T PRK08134 157 -TLGNPGLEVLD--IPTVAAIAHEAGVPLLV 184 (433)
T ss_pred -CCCcccCcccC--HHHHHHHHHHcCCEEEE
Confidence 22211111222 35588999999999988
No 57
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.02 E-value=27 Score=35.82 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=61.1
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
.|..||+.|-+.+-..-+....+.|-.+.|+ +..+. .-+..|.+.| .++++.-.--...+..+++||+..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVv--sp~~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at--- 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVI--AEELE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAAT--- 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEE--cCCCC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECC---
Confidence 4678999999988788777777778765555 43332 2234566666 677766332233345566665432
Q ss_pred ecCCCe-ecccchHHHHHHHHhCCCcEEecccC
Q psy17541 605 LSNGAV-MSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 605 laNG~V-vNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
|.- +| ..++..|+..++||.++-+.
T Consensus 78 ---~d~~ln----~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 78 ---DDEELN----RRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred ---CCHHHH----HHHHHHHHHcCCEEEECCCc
Confidence 221 22 47889999999999988643
No 58
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.32 E-value=28 Score=39.41 Aligned_cols=93 Identities=10% Similarity=-0.043 Sum_probs=58.8
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
|..|+.+|....=..+.+.+...| +.|++.|.++...=..+...|.+.||.+.+-.+. .-.+.+.|.||+... |-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Spg-i~ 88 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTPS-MR 88 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECCC-CC
Confidence 568999988876444444454445 5899999876432223345588889877654332 233467888887642 22
Q ss_pred cCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 606 SNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 606 aNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
. +.++-..|++.++||+=
T Consensus 89 ~---------~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 89 I---------DSPELVKAKEEGAYITS 106 (458)
T ss_pred C---------CchHHHHHHHcCCcEEe
Confidence 2 24567777888888863
No 59
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=72.08 E-value=58 Score=35.02 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=51.0
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch--------HHHHHhhh-cc-EE
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS--------AVSYIMRE-VS-KV 597 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS--------AVsyiM~~-Vd-kV 597 (717)
+++|-|-+..+..++......|. +|+|+.. ..-|..+...+...|+++.++... .+...+.. .+ ++
T Consensus 57 i~~t~~~t~al~~~~~~l~~~~~--~vlv~~~--~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 132 (363)
T TIGR02326 57 VLLQGSGTFAVEAVIGSAVPKDG--KLLVVIN--GAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITH 132 (363)
T ss_pred EEEcCCCHHHHHHHHHhcCCCCC--eEEEEeC--ChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccE
Confidence 44555555555555545443333 3444321 122333344455679988877632 34444432 11 23
Q ss_pred EEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 598 IIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 598 LLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
+.-.+.=...|.+ +.+ ..|+-+|+.+|++|+|=
T Consensus 133 v~~~~~~~~tG~~-~~i--~~I~~l~~~~g~~livD 165 (363)
T TIGR02326 133 IALVHCETTTGIL-NPI--EAVAKLAHRHGKVTIVD 165 (363)
T ss_pred EEEEeecCCcccc-CcH--HHHHHHHHHcCCEEEEE
Confidence 3333333345544 333 57888899999877763
No 60
>PRK07582 cystathionine gamma-lyase; Validated
Probab=71.96 E-value=41 Score=37.03 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=56.7
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHHH-HHHhCCCcEEEEcchHHH-HHhhhccEEEEce
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEMLR-RLVKHQVDCSYVLLSAVS-YIMREVSKVIIGA 601 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA~-~L~~~GI~vTyI~DSAVs-yiM~~VdkVLLGA 601 (717)
..+.|++-+-+..+..+|......| -+|++.+ |.+.+ ..+++ .|...|+++.++...... .++++...|++-
T Consensus 65 ~~~~v~~~sG~~Ai~~~l~all~~G--d~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le- 139 (366)
T PRK07582 65 GAEALVFPSGMAAITAVLRALLRPG--DTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAE- 139 (366)
T ss_pred CCCEEEECCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEE-
Confidence 3466666555555555554444334 3566653 55544 34444 466789999998754322 445566666653
Q ss_pred eeEe-cCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALL-SNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVl-aNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
... ..|.+ .--..|+-+|+.+|+.++|
T Consensus 140 -~p~NPtg~v---~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 140 -TPSNPGLDV---CDLAALAAAAHAAGALLVV 167 (366)
T ss_pred -CCCCCCCCc---cCHHHHHHHHHHcCCEEEE
Confidence 221 11211 2235778888899987766
No 61
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.67 E-value=37 Score=37.70 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=37.3
Q ss_pred hhccCCCeEEEecCchHHHHHHHHHHHc-CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc
Q psy17541 521 NKLANDDVILTYGCSSLVEKILLTAHEK-GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL 583 (717)
Q Consensus 521 e~I~dGdvILTyg~SStV~~vL~~A~e~-Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~ 583 (717)
..|..||+|+..|....+..+....... ...-+++|+-. +.-|+.+++.|.+.|+++++|.
T Consensus 200 ~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 200 TVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred cEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEE
Confidence 3456677777777777665554433221 12235666655 4456777778877777777663
No 62
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=71.66 E-value=9.7 Score=33.97 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEE----cch---H----HHHHhh--hccEEEEceeeEec
Q psy17541 540 KILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYV----LLS---A----VSYIMR--EVSKVIIGAHALLS 606 (717)
Q Consensus 540 ~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI----~DS---A----VsyiM~--~VdkVLLGAdaVla 606 (717)
.+.+...+.| |++|.+++ +++.|.++||+|.-+ ... . +..+|+ ++|+||.=.
T Consensus 4 ~~a~~l~~lG--~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~----- 68 (95)
T PF02142_consen 4 PLAKRLAELG--FEIYATEG--------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP----- 68 (95)
T ss_dssp HHHHHHHHTT--SEEEEEHH--------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE------
T ss_pred HHHHHHHHCC--CEEEEChH--------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC-----
Confidence 4445555556 89998775 899999999994443 333 1 555554 589887532
Q ss_pred CCCeecc-cchHHHHHHHHhCCCcEE
Q psy17541 607 NGAVMSR-AGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 607 NG~VvNK-iGT~~VALaAK~~~VPVy 631 (717)
++.--.. ...+.+--+|-.++||.+
T Consensus 69 ~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 69 YPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred CCCcccccCCcHHHHHHHHHcCCCCc
Confidence 2222222 367899999999999975
No 63
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=71.27 E-value=61 Score=34.53 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=51.0
Q ss_pred CCeEEEecC-chHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc--------hHHHHHhh--hc
Q psy17541 526 DDVILTYGC-SSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL--------SAVSYIMR--EV 594 (717)
Q Consensus 526 GdvILTyg~-SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D--------SAVsyiM~--~V 594 (717)
..+++..+. +..+..++......| -+|++.+ |..-+..+...+...|.++.++.. ..+...+. +.
T Consensus 50 ~~~~~~~~~~t~al~~~~~~~~~~g--~~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~ 125 (356)
T cd06451 50 GLTFLLSGSGTGAMEAALSNLLEPG--DKVLVGV--NGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDI 125 (356)
T ss_pred CCEEEEecCcHHHHHHHHHHhCCCC--CEEEEec--CCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCC
Confidence 344544444 444333333332333 3566654 222233234455667888877742 23333332 45
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
..|++ .+.-...|.+.. --.|+-+|+++++++++=
T Consensus 126 ~~v~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D 160 (356)
T cd06451 126 KAVTL-THNETSTGVLNP---LEGIGALAKKHDALLIVD 160 (356)
T ss_pred CEEEE-eccCCCcccccC---HHHHHHHHHhcCCEEEEe
Confidence 55554 333344555433 334777889999988873
No 64
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=71.14 E-value=32 Score=37.95 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=70.2
Q ss_pred HHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCC---------c-------hhH----HHHHHHHH
Q psy17541 514 AICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSP---------W-------YEG----KEMLRRLV 573 (717)
Q Consensus 514 ~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP---------~-------~EG----r~lA~~L~ 573 (717)
.|+..+.++|.+ ..||..|.+.+=-.++......|.. ++.++|..- . ..| ..++++|.
T Consensus 13 ~~G~~~Q~~L~~-~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 13 GIGEEGQRKIRE-KHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred hcCHHHHHhhcC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 467777888865 6799999987655566666666753 344444322 0 012 23446666
Q ss_pred hC--CCcEEEEcc----hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 574 KH--QVDCSYVLL----SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 574 ~~--GI~vTyI~D----SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+. ++.++.+.. ..+..++.++|.||.+.|..-. -+.+..+|+.+++|++..+
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 54 466555531 3455667889999999875432 2567789999999998653
No 65
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=71.04 E-value=58 Score=32.20 Aligned_cols=122 Identities=19% Similarity=0.151 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhc--cCCCeEEEecCc-h---HHHHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcE
Q psy17541 508 VDMAGNAICMFFHNKL--ANDDVILTYGCS-S---LVEKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDC 579 (717)
Q Consensus 508 I~~A~e~Ia~~A~e~I--~dGdvILTyg~S-S---tV~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~v 579 (717)
++.|...++++...++ ..+..|+.++-+ . --.-+.+++++.|.+..|+++.-.+...+ +...+.+.+.|+++
T Consensus 5 ME~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 5 MENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 3458888999888888 666677766332 2 22334455666788888876654433333 56677788889877
Q ss_pred EEE-cchHHHHHhhhccEEEEceeeEecCCCeecccc-hHHHHHHHHhCCCcEEe
Q psy17541 580 SYV-LLSAVSYIMREVSKVIIGAHALLSNGAVMSRAG-TAQVSLVARAFNVPVLA 632 (717)
Q Consensus 580 TyI-~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiG-T~~VALaAK~~~VPVyV 632 (717)
... .+......+..+|.|| |+|+..|.--.--| ...+.-.+..++.||+.
T Consensus 85 ~~~~~~~~~~~~~~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viA 136 (169)
T PF03853_consen 85 IELDSDEDLSEALEPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIA 136 (169)
T ss_dssp ESSCCGSGGGHHGSCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEE
T ss_pred eeccccchhhcccccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEE
Confidence 654 3445555666888886 67777763322223 33333445556677554
No 66
>PRK05839 hypothetical protein; Provisional
Probab=71.01 E-value=42 Score=36.61 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=57.1
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH-HHHH-------hhhc
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA-VSYI-------MREV 594 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA-Vsyi-------M~~V 594 (717)
+...++++|.|.+..+..++......+.. ..++++ .|.+.+...+ +...|+++..+.... -++. ..++
T Consensus 81 ~~~~~I~it~G~~~al~~~~~~~~~~~~g-d~vlv~-~P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~ 156 (374)
T PRK05839 81 LKENELIPTFGTREVLFNFPQFVLFDKQN-PTIAYP-NPFYQIYEGA--AIASRAKVLLMPLTKENDFTPSLNEKELQEV 156 (374)
T ss_pred CCcceEEEecCcHHHHHHHHHHHhcCCCC-CEEEEC-CCCchhhHHH--HHhcCCEEEEeecccccCCcCCcchhhhccc
Confidence 55667889999887755444433211111 345555 3777765433 345788888886532 1121 1234
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
..|+|- .-=-..|.++++-=-..++-.|+.+|+.+++
T Consensus 157 k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 157 DLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 444331 1111125555444445677778999998875
No 67
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=70.88 E-value=20 Score=33.00 Aligned_cols=87 Identities=14% Similarity=0.244 Sum_probs=54.2
Q ss_pred eEEEecCc--hHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc---------h-HHHHHhh-hc
Q psy17541 528 VILTYGCS--SLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL---------S-AVSYIMR-EV 594 (717)
Q Consensus 528 vILTyg~S--StV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D---------S-AVsyiM~-~V 594 (717)
++++++.. .-+..+....++ ..|++|.+++ +++.|.+.||+|+.+.. . .+-.+.. ++
T Consensus 3 vlisv~~~dk~~~~~~a~~l~~--~G~~i~aT~g--------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 3 ILISIGSYSKPELLPTAQKLSK--LGYKLYATEG--------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEEecCcccchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 44555433 223344444443 4588887664 78899999999988732 2 2333332 69
Q ss_pred cEEEE----ceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 595 SKVII----GAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 595 dkVLL----GAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
|+||- |.+....+| +.+=..|-.++||++-
T Consensus 73 dlVIn~~~~~~~~~~~~~--------~~iRr~Av~~~ip~iT 106 (116)
T cd01423 73 DLVINLPSNRGKRVLDND--------YVMRRAADDFAVPLIT 106 (116)
T ss_pred eEEEECCCCCCCccccCc--------EeeehhhHhhCCcccc
Confidence 99976 554444555 4455678899999973
No 68
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=70.65 E-value=39 Score=37.36 Aligned_cols=103 Identities=14% Similarity=0.282 Sum_probs=55.5
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch----------HHHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS----------AVSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS----------AVsyiM~ 592 (717)
+....+|+|.|.+..+..++......|. +|++. .|.+.+.. ..+...|+++.++... .+-..+.
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~P~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTALCDEGD--NILVP--APGFPHYE--TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHhcCCCC--EEEEc--cCCcccHH--HHHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 4556789999988876665554433343 44443 36666543 3355578888877531 1222222
Q ss_pred -hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..|++. .-=-..|.++++-=-..++-+|+.+++.|++
T Consensus 176 ~~~~~i~~~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 176 DRTKALIMT-NPSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cCceEEEEe-CCCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 33444331 1111224444433345567778888887765
No 69
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=70.64 E-value=35 Score=38.73 Aligned_cols=98 Identities=13% Similarity=0.245 Sum_probs=61.1
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-H-HHHHHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-K-EMLRRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r-~lA~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLG 600 (717)
+.|+|-|-+..+..+|......|. +|++.+ |.+.| . .+...+...|+++.++... ++-..+. ++..|++-
T Consensus 81 ~al~~~sG~~Ai~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~ 156 (431)
T PRK08248 81 GALAVSSGQAAITYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAE 156 (431)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 678888777877777776655555 566654 55655 2 3445577899999998643 3433443 45555552
Q ss_pred eeeE-ecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 601 AHAL-LSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 601 AdaV-laNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
.. -..|.++.- ..|+-+|+.++++|+|=
T Consensus 157 --sp~NPtG~v~di---~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 157 --TIGNPKGDVLDI---EAVAAIAHEHGIPLIVD 185 (431)
T ss_pred --CCCCCCCcccCH---HHHHHHHHHcCCEEEEe
Confidence 22 123544442 46778899999988763
No 70
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=70.51 E-value=57 Score=35.19 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=68.1
Q ss_pred HHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCC---------Cc-----hhH----HHHHHHHHh
Q psy17541 513 NAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGS---------PW-----YEG----KEMLRRLVK 574 (717)
Q Consensus 513 e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESR---------P~-----~EG----r~lA~~L~~ 574 (717)
..++..+.++|.+ ..|+.+|.+.+=-.+...+...|.. ++.++|-. -. .-| ..|+++|.+
T Consensus 18 ~L~G~e~~~kL~~-s~VlVvG~GGVGs~vae~Lar~GVg-~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~ 95 (268)
T PRK15116 18 RLYGEKALQLFAD-AHICVVGIGGVGSWAAEALARTGIG-AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQ 95 (268)
T ss_pred HHhCHHHHHHhcC-CCEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHh
Confidence 3477777888865 6888899887644555555555732 34444422 11 112 145677776
Q ss_pred CC--CcEEEEcc----hHHHHHh-hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccC-Ccccc
Q psy17541 575 HQ--VDCSYVLL----SAVSYIM-REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACET-HKFCE 641 (717)
Q Consensus 575 ~G--I~vTyI~D----SAVsyiM-~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEt-yKFs~ 641 (717)
.. +.++.+.+ ..+..++ .+.|.||...|.+.+ + ..+.-.|+.+++|||.+... -|+++
T Consensus 96 INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~------k---~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 96 INPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRP------K---AALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred HCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHH------H---HHHHHHHHHcCCCEEEECCcccCCCC
Confidence 54 34444322 1233333 368888766664422 2 35677789999999988665 34443
No 71
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=70.49 E-value=29 Score=38.06 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=50.4
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh---
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL----------SAVSYIMR--- 592 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D----------SAVsyiM~--- 592 (717)
..+++|.|.+..+..+|......|. +|++. ++.+-+... .+...|+.+.++.. ..+-..+.
T Consensus 79 ~~~~~~~g~t~a~~~al~~l~~~gd--~Vlv~--~~~h~s~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 152 (387)
T PRK09331 79 DEARVTHGAREGKFAVMHSLCKKGD--YVVLD--GLAHYTSYV--AAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVK 152 (387)
T ss_pred CcEEEeCCHHHHHHHHHHHhcCCCC--EEEEC--CCchHHHHH--HHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhh
Confidence 3567776666665555555544343 45553 344333322 24557888887753 22323332
Q ss_pred -----hccEEEEceeeEecCCCeecccchH----HHHHHHHhCCCcEEe
Q psy17541 593 -----EVSKVIIGAHALLSNGAVMSRAGTA----QVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -----~VdkVLLGAdaVlaNG~VvNKiGT~----~VALaAK~~~VPVyV 632 (717)
++..|++- . +.+..|+. .|+-+|+++|++|+|
T Consensus 153 ~~~~~~~~lV~l~--~------~~~~tG~~~~l~~I~~la~~~g~~liv 193 (387)
T PRK09331 153 EETGKPPALALLT--H------VDGNYGNLADAKKVAKVAHEYGIPFLL 193 (387)
T ss_pred hccCCCCEEEEEE--C------CCCCCcccccHHHHHHHHHHcCCEEEE
Confidence 34455543 1 12333433 578889999998886
No 72
>PRK05973 replicative DNA helicase; Provisional
Probab=70.31 E-value=44 Score=35.34 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=63.6
Q ss_pred ccCCCeEEEecCc-----hHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEE-----EEcc----hHHH
Q psy17541 523 LANDDVILTYGCS-----SLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCS-----YVLL----SAVS 588 (717)
Q Consensus 523 I~dGdvILTyg~S-----StV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vT-----yI~D----SAVs 588 (717)
|..|+.+|..|.+ .....++..+..+|.+.-.|-.|-.| ..+..++...|++.. ++.| -.+.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~----~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE----QDVRDRLRALGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH----HHHHHHHHHcCCChHHhccceEeecCCCCCHH
Confidence 5678899988664 35677788777777654444445443 345666666777521 1111 1122
Q ss_pred HHhh------hccEEEEceeeEecCCCeecccch--HHHHHHHHhCCCcEEecccCCccc
Q psy17541 589 YIMR------EVSKVIIGAHALLSNGAVMSRAGT--AQVSLVARAFNVPVLAACETHKFC 640 (717)
Q Consensus 589 yiM~------~VdkVLLGAdaVlaNG~VvNKiGT--~~VALaAK~~~VPVyV~cEtyKFs 640 (717)
+++. +++.|||=.=..+..+.--...+. ..+-..|+.+|+||+++++.....
T Consensus 137 ~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~ 196 (237)
T PRK05973 137 YIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSF 196 (237)
T ss_pred HHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCcccc
Confidence 3332 356666533222221110011222 336678999999999999877554
No 73
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=70.22 E-value=61 Score=36.37 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=55.2
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEcchH---HHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVLLSA---VSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~DSA---VsyiM~-~VdkVLLG 600 (717)
+.|++-+-+..+..+|......|. +|++.+. .+.+ ..+...+...|+.+.++.... +...+. +...|++-
T Consensus 87 ~al~~~sG~~Ai~~~l~all~~Gd--~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~e 162 (403)
T PRK07810 87 ACFATASGMSAVFTALGALLGAGD--RLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFE 162 (403)
T ss_pred cEEEECChHHHHHHHHHHHhCCCC--EEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 566666666666666655544444 5776654 2333 334455777899999986433 333333 33344331
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.-.-..|.++. --.|+-+|++++++|+|
T Consensus 163 -sp~Nptg~v~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 163 -TPSNPMQSLVD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred -CCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 11112333332 34577889999998876
No 74
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=70.11 E-value=66 Score=28.65 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=37.3
Q ss_pred HHHHhCCCcEEEEcc------hHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 570 RRLVKHQVDCSYVLL------SAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 570 ~~L~~~GI~vTyI~D------SAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
..+.+.|+++..+.. .++..+.. ++|.|++|.+.=..-+ ---.|+... -+.++.++||+|+
T Consensus 63 ~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~--~~~lGs~~~-~v~~~~~~pvlvv 131 (132)
T cd01988 63 RIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLR--DRLFGGVID-QVLESAPCDVAVV 131 (132)
T ss_pred HHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCcc--ceecCchHH-HHHhcCCCCEEEe
Confidence 344567998886653 23333443 4999999998533221 122466444 4457778999985
No 75
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=69.89 E-value=54 Score=34.50 Aligned_cols=103 Identities=12% Similarity=0.090 Sum_probs=51.7
Q ss_pred hhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc---hHHHHHhhh----
Q psy17541 521 NKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL---SAVSYIMRE---- 593 (717)
Q Consensus 521 e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D---SAVsyiM~~---- 593 (717)
+++...+.|++.+.+..+..+|..+...|. +|++ ++|.+.+... .+...|+++.++.. ..+-.++.+
T Consensus 57 ~~~~~~~~iv~~sg~~a~~~~~~~~~~~gd--~Vl~--~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~le~~i~~~~~~ 130 (349)
T cd06454 57 EFHGKEAALVFSSGYAANDGVLSTLAGKGD--LIIS--DSLNHASIID--GIRLSGAKKRIFKHNDMEDLEKLLREARRP 130 (349)
T ss_pred HHhCCCCEEEeccHHHHHHHHHHHhcCCCC--EEEE--ehhhhHHHHH--HHHHcCCceEEecCCCHHHHHHHHHHhhcc
Confidence 334333555555444444444443333333 4444 3455544332 23457888877643 234444443
Q ss_pred -ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 594 -VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 594 -VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
-.++++ ...+....+++..+ -.|+-+|++++++|+|
T Consensus 131 ~~~~~v~-~~~~~~~tG~~~~~--~~i~~~~~~~~~~liv 167 (349)
T cd06454 131 YGKKLIV-TEGVYSMDGDIAPL--PELVDLAKKYGAILFV 167 (349)
T ss_pred CCCeEEE-EeccccCCCCccCH--HHHHHHHHHcCCEEEE
Confidence 123333 22333323344443 4578889999999887
No 76
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=69.66 E-value=77 Score=34.92 Aligned_cols=117 Identities=14% Similarity=0.162 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHH--cCCeeEEEEcCCCCchhHH-HHHHHHHhCCCcEEEEcch
Q psy17541 509 DMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHE--KGTKFRVIIVDGSPWYEGK-EMLRRLVKHQVDCSYVLLS 585 (717)
Q Consensus 509 ~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e--~Gk~FrVIVvESRP~~EGr-~lA~~L~~~GI~vTyI~DS 585 (717)
+.+++.|+++.- ...+.+++|-|.+..+..+|..... .+..-+|++.+ +.+... .....|...|+++.++...
T Consensus 50 ~~~r~~la~~~g--~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~ 125 (402)
T TIGR02006 50 ENARNQVAELIG--ADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPK 125 (402)
T ss_pred HHHHHHHHHHhC--CCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccC
Confidence 334555555321 2344677777766665555443321 12223566653 344443 2344566679999888532
Q ss_pred --------HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 586 --------AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 586 --------AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+...+..-+++++-.+.=...| ++..+ ..|+-+|+.+|++|+|
T Consensus 126 ~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG-~~~~~--~~I~~l~~~~g~~liv 177 (402)
T TIGR02006 126 SNGLIDLEELKAAIRDDTILVSIMHVNNEIG-VIQDI--AAIGEICRERKVFFHV 177 (402)
T ss_pred CCCcCCHHHHHHhcCCCCEEEEEECCCcCce-ecccH--HHHHHHHHHcCCEEEE
Confidence 23233322123322222212223 33332 3588899999998876
No 77
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=69.65 E-value=66 Score=35.78 Aligned_cols=98 Identities=10% Similarity=0.160 Sum_probs=53.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HH-HHHHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KE-MLRRLVKHQVDCSYVLL---SAVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~-lA~~L~~~GI~vTyI~D---SAVsyiM~-~VdkVLLG 600 (717)
++|+|-|-...+..+|......|. +|++ +++.+.+ .. +...+...|+.++++.. ..+...+. +...|++-
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~Gd--~Vi~--~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie 153 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQAGD--HVVS--SRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLE 153 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEE--ccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 466666555665555555544454 5665 3455544 23 33456778999998854 33444443 33344431
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.---..|.+.. -..|+-+|+.++++++|
T Consensus 154 -~p~NptG~v~d---l~~I~~la~~~gi~liv 181 (390)
T PRK08133 154 -TPSNPLTELAD---IAALAEIAHAAGALLVV 181 (390)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHHcCCEEEE
Confidence 11112333332 15677789999998886
No 78
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=69.50 E-value=75 Score=34.62 Aligned_cols=104 Identities=12% Similarity=0.148 Sum_probs=50.5
Q ss_pred CCeEEEecCchHHHHHHHHHHH--cCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc--------hHHHHHhh-hc
Q psy17541 526 DDVILTYGCSSLVEKILLTAHE--KGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL--------SAVSYIMR-EV 594 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e--~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D--------SAVsyiM~-~V 594 (717)
.++++|.|.+..+..++..... .+..-+|++.+.-.......+.......|+.+.++.. ..+-..+. +.
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~ 160 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKT 160 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCC
Confidence 3577776665554444433211 1223367765532111111122223357888877752 12222222 33
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
..|++. +.-...|.+.. -..|+-+|+++|++|+|=
T Consensus 161 ~lv~~~-~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD 195 (403)
T TIGR01979 161 KLVAIT-HVSNVLGTVNP---VEEIAKLAHQVGAKVLVD 195 (403)
T ss_pred eEEEEE-cccccccccCC---HHHHHHHHHHcCCEEEEE
Confidence 344432 22233455444 355777889999988874
No 79
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=69.50 E-value=67 Score=35.05 Aligned_cols=117 Identities=9% Similarity=0.191 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHH----HcCCeeEEEEcCCCCchhHH-H-HHHHHHhCCCcEE
Q psy17541 507 QVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAH----EKGTKFRVIIVDGSPWYEGK-E-MLRRLVKHQVDCS 580 (717)
Q Consensus 507 rI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~----e~Gk~FrVIVvESRP~~EGr-~-lA~~L~~~GI~vT 580 (717)
.+..+++.|+++.-.. ...++|+|-|.+..+..++.... ..|. +|++.+ |.+.+- . +...+...|+.+.
T Consensus 61 ~~~~~r~~la~~~g~~-~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd--~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~ 135 (398)
T TIGR03392 61 RYELARQQVARFLNAP-DAENIVWTRGTTESINLVAQSYARPRLQPGD--EIIVSE--AEHHANLIPWLMVAQQTGAKVV 135 (398)
T ss_pred HHHHHHHHHHHHhCCC-CCCeEEEeCChHHHHHHHHHHhhhccCCCCC--EEEECC--cchhHHHHHHHHHHHHcCcEEE
Confidence 3444556666543210 12457778777766555554331 2232 566644 444442 2 2233456799888
Q ss_pred EEcch--------HHHHHhh-hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 581 YVLLS--------AVSYIMR-EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 581 yI~DS--------AVsyiM~-~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++... .+...+. +...|++ .+.=...|.+.. -..|+-+|+.+|++|+|
T Consensus 136 ~v~~~~~~~~~~~~l~~~i~~~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 136 KLPIGADLLPDIRQLPELLTPRTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVV 192 (398)
T ss_pred EEecCCCCCcCHHHHHHHhccCceEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 87532 2333332 3444443 233333454432 24577789999998876
No 80
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=68.82 E-value=1.2e+02 Score=32.35 Aligned_cols=114 Identities=15% Similarity=-0.008 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEec--CchHHHHHHHHHHH--------------------
Q psy17541 490 TQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYG--CSSLVEKILLTAHE-------------------- 547 (717)
Q Consensus 490 ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg--~SStV~~vL~~A~e-------------------- 547 (717)
.+..+.+.+.....+++-...-....-+.++++|.+-+.|..+| .|..|-..+.....
T Consensus 94 ~~~~~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~ 173 (281)
T COG1737 94 ESILEKLLAANIAALERTLNLLDEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLA 173 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHH
Confidence 33444444444444433333334445556677777777666654 44555444433221
Q ss_pred -cCCe-eEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceee
Q psy17541 548 -KGTK-FRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 548 -~Gk~-FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAda 603 (717)
.+.. +-|.+.=|+--.|-...++...+.|+++..|+++..+-+-+-+|.+|.....
T Consensus 174 ~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~ 231 (281)
T COG1737 174 LLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVA 231 (281)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccCc
Confidence 1112 2222223333344567888899999999999999999999999999987543
No 81
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=68.57 E-value=24 Score=31.66 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=53.2
Q ss_pred eEEEecCchHHHHHHHHHHHc-CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---HHHHHhh------hcc-E
Q psy17541 528 VILTYGCSSLVEKILLTAHEK-GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---AVSYIMR------EVS-K 596 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~-Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---AVsyiM~------~Vd-k 596 (717)
+|.||.....+.++|....++ ...++|||+|..+..+-...++.+.+.+.+++|+... ..+..+. .-+ .
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i 82 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGEYI 82 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SSEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccceeEE
Confidence 567788877788888877665 6779999999888666677888888777888887743 3333332 122 4
Q ss_pred EEEceeeEecCC
Q psy17541 597 VIIGAHALLSNG 608 (717)
Q Consensus 597 VLLGAdaVlaNG 608 (717)
+++-+|.++..+
T Consensus 83 ~~ld~D~~~~~~ 94 (169)
T PF00535_consen 83 LFLDDDDIISPD 94 (169)
T ss_dssp EEEETTEEE-TT
T ss_pred EEeCCCceEcHH
Confidence 556666666655
No 82
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=67.90 E-value=1.2e+02 Score=32.66 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=39.3
Q ss_pred HHHHHHhCCCcEEEEcchHHHH----HhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 568 MLRRLVKHQVDCSYVLLSAVSY----IMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 568 lA~~L~~~GI~vTyI~DSAVsy----iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
++..|...|+++.++.+....+ .+.+-|.||+ |..+|. .--+..++-.|+..|+|+++++...
T Consensus 65 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~----iS~sG~---t~~~~~~~~~ak~~g~~vi~iT~~~ 131 (326)
T PRK10892 65 MAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA----ISNSGE---SSEILALIPVLKRLHVPLICITGRP 131 (326)
T ss_pred HHHHHhcCCceeEEeChHHhhccccccCCCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4456667888888875543332 2334454442 333443 3345667788999999999987653
No 83
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=67.10 E-value=23 Score=36.48 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhccCCCeEE-EecCchHHHHHHHHHHHcCCeeEEEEcCCC-------CchhHHHHHHHHHhCC-CcEEEE
Q psy17541 512 GNAICMFFHNKLANDDVIL-TYGCSSLVEKILLTAHEKGTKFRVIIVDGS-------PWYEGKEMLRRLVKHQ-VDCSYV 582 (717)
Q Consensus 512 ~e~Ia~~A~e~I~dGdvIL-Tyg~SStV~~vL~~A~e~Gk~FrVIVvESR-------P~~EGr~lA~~L~~~G-I~vTyI 582 (717)
++.|+..++..|.||++|- =.|-...|..+|.+ ++.+.++ +|+- |.. |.... .|...| +++++.
T Consensus 3 ~~~Ia~~aA~~i~dg~~v~lGiGiP~~va~~l~~----~~~l~l~-~E~G~~g~~p~p~~-~~~~~-~l~~~g~~~~~~~ 75 (207)
T TIGR02428 3 RDQIAARAAQELKDGDYVNLGIGIPTLVANYLPE----GIEVFLQ-SENGILGMGPAPEP-GEEDP-DLINAGKQPVTLL 75 (207)
T ss_pred HHHHHHHHHHhcCCCCEEEEeecHHHHHHHHHhc----CCeEEEE-EeCceecCccCCCC-CCcCH-HHHhCCCCceeec
Confidence 5789999999999998654 23433444444432 4555444 3322 220 11111 344443 333332
Q ss_pred c------chHHHHHhh--hccEEEEceeeEecCCCee
Q psy17541 583 L------LSAVSYIMR--EVSKVIIGAHALLSNGAVM 611 (717)
Q Consensus 583 ~------DSAVsyiM~--~VdkVLLGAdaVlaNG~Vv 611 (717)
+ .+....+++ .+|..|+||--|-..|.|-
T Consensus 76 ~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN 112 (207)
T TIGR02428 76 PGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLA 112 (207)
T ss_pred cCcEEecChhheeeEcCCceeEEEechHHhCCCCccc
Confidence 2 222222333 5788899998777777654
No 84
>PRK07568 aspartate aminotransferase; Provisional
Probab=66.74 E-value=59 Score=35.34 Aligned_cols=103 Identities=13% Similarity=0.297 Sum_probs=52.8
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-----------hHHHHHh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-----------SAVSYIM 591 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-----------SAVsyiM 591 (717)
+....+++|-|.+..+..++......|. +|+|.+ |.+.+.. ..+...|+.+..+.. ..+...+
T Consensus 86 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~ 159 (397)
T PRK07568 86 VEPDEILITNGGSEAILFAMMAICDPGD--EILVPE--PFYANYN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLI 159 (397)
T ss_pred CCcceEEEcCChHHHHHHHHHHhcCCCC--EEEEec--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhc
Confidence 3444678888887766555544433343 566654 6665432 234557888777752 1122222
Q ss_pred h-hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 R-EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~-~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
. ++..|++- +---..|.++..---..|+-+|+++++.+++
T Consensus 160 ~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 160 TPKTKAILIS-NPGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred CccceEEEEE-CCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 2 23333222 1111223333322234577788999987765
No 85
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=66.69 E-value=1e+02 Score=32.60 Aligned_cols=46 Identities=15% Similarity=0.001 Sum_probs=35.9
Q ss_pred EcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEce
Q psy17541 556 IVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 556 VvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
+.-|+-..+-..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 194 iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 239 (292)
T PRK11337 194 VSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICST 239 (292)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcC
Confidence 3334444444678888899999999999999999988999999743
No 86
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=66.59 E-value=88 Score=33.40 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=53.6
Q ss_pred CCCeEEEecCchHHHHHHHHHHHc--CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc--------hHHHHHhhhc
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEK--GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL--------SAVSYIMREV 594 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~--Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D--------SAVsyiM~~V 594 (717)
+...++|-|-+.....++..+... +..-+|++.+. .+-. ..+.+...|+++..++. ..+-..+.+-
T Consensus 76 ~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~--~h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 151 (371)
T PRK13520 76 DAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPES--AHFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDN 151 (371)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCc--chHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhC
Confidence 445677766666655555555432 12346777663 2222 22233446888888752 2233333322
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+..++..+.-...|.+. . --.|+-+|+.+|+.|+|
T Consensus 152 ~~~vi~~~~~~~tG~~~-~--l~~I~~l~~~~g~~liv 186 (371)
T PRK13520 152 TIGIVGIAGTTELGQVD-P--IPELSKIALENGIFLHV 186 (371)
T ss_pred CEEEEEEcCCcCCcccC-C--HHHHHHHHHHcCCCEEE
Confidence 33334333333445443 3 34577889999999887
No 87
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=66.16 E-value=48 Score=30.68 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=28.2
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
++|+|++|.+. | ...+.| ....-+.++-.+||+|+=
T Consensus 103 ~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 103 DMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIVP 138 (144)
T ss_pred CCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEec
Confidence 69999999985 2 344578 566678888999999973
No 88
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=65.96 E-value=23 Score=32.99 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=53.4
Q ss_pred eEEEecCchHHHHHHHHHHHcCCe-eEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeE
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTK-FRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHAL 604 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~-FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaV 604 (717)
.||++|...- ++.|..+..+... -+|||.-..|..... .. .+++......++..+.. ++|+||+|-+.-
T Consensus 2 kVLviGsGgR-EHAia~~l~~s~~v~~v~~aPGN~G~~~~------~~-~~~~~~~d~~~l~~~a~~~~idlvvvGPE~p 73 (100)
T PF02844_consen 2 KVLVIGSGGR-EHAIAWKLSQSPSVEEVYVAPGNPGTAEL------GK-NVPIDITDPEELADFAKENKIDLVVVGPEAP 73 (100)
T ss_dssp EEEEEESSHH-HHHHHHHHTTCTTEEEEEEEE--TTGGGT------SE-EE-S-TT-HHHHHHHHHHTTESEEEESSHHH
T ss_pred EEEEECCCHH-HHHHHHHHhcCCCCCEEEEeCCCHHHHhh------ce-ecCCCCCCHHHHHHHHHHcCCCEEEECChHH
Confidence 5899988865 7788877766544 489998777654321 00 01111111123444433 699999999999
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
+.+| ++=.-+..|+||+
T Consensus 74 L~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 74 LVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp HHTT----------HHHHHHHTT-CEE
T ss_pred HHHH----------HHHHHHHCCCcEE
Confidence 9999 6767777888875
No 89
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=65.91 E-value=34 Score=36.88 Aligned_cols=95 Identities=18% Similarity=0.087 Sum_probs=53.7
Q ss_pred ccCCCeEEEecCchHHHHHHHHH-HHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEce
Q psy17541 523 LANDDVILTYGCSSLVEKILLTA-HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A-~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
+...++++|.|.+..+..++... ...|. .|++ + .|.+.+...+.. ..|+++..+.+ +..+.. -..
T Consensus 84 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~~~--~~g~~~~~~~~--~~~l~~------~~~ 149 (364)
T PRK07865 84 LDPAAVLPVIGSKELVAWLPTLLGLGPGD--VVVI-P-ELAYPTYEVGAR--LAGATVVRADS--LTELGP------QRP 149 (364)
T ss_pred CCcccEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcccHHHHHH--hcCCEEEecCC--hhhCCc------ccc
Confidence 44567999999998865544433 23343 3444 4 377766544333 36888777753 111111 122
Q ss_pred eeEecCCCeecccchH-------HHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGTA-------QVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT~-------~VALaAK~~~VPVyV 632 (717)
..|+-+ ..-|..|.. .++-+|+++++.+++
T Consensus 150 ~~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 186 (364)
T PRK07865 150 ALIWLN-SPSNPTGRVLGVDHLRKVVAWARERGAVVAS 186 (364)
T ss_pred eEEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 333333 345777733 567778899986664
No 90
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=65.45 E-value=81 Score=36.10 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=59.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-H-HHHHHHHhCCCcEEEEcc----hHHHHHhhhccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-K-EMLRRLVKHQVDCSYVLL----SAVSYIMREVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r-~lA~~L~~~GI~vTyI~D----SAVsyiM~~VdkVLLG 600 (717)
..|+|-|-..++..+|......|- +|++ +.+.+.| . .+...|...||.++++.. ..+...+..-+++|+
T Consensus 78 ~av~~~SG~aAi~~al~all~~GD--~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~- 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSGD--HLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY- 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCCC--EEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-
Confidence 456655555665656655554454 5666 5566766 2 334457889999999854 355556655456655
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+.. .|= ...-+---.|+-+|+.+|++++|
T Consensus 153 ~e~p-gnP-~~~v~Di~~I~~iA~~~gi~liv 182 (432)
T PRK06702 153 AESL-GNP-AMNVLNFKEFSDAAKELEVPFIV 182 (432)
T ss_pred EEcC-CCc-cccccCHHHHHHHHHHcCCEEEE
Confidence 3432 211 11111356788999999999887
No 91
>KOG1467|consensus
Probab=65.02 E-value=12 Score=43.48 Aligned_cols=29 Identities=41% Similarity=0.288 Sum_probs=25.5
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHhhccc
Q psy17541 190 SAELSRDLVKAQREAKKAAKLAAKQKAKV 218 (717)
Q Consensus 190 ~~~~~~~~~~~~r~~kk~~~~~~~~~~k~ 218 (717)
....|+.|.++.+|+++++|+++|..+++
T Consensus 117 ~~~~t~a~~~a~~Ea~~a~K~a~kg~~~~ 145 (556)
T KOG1467|consen 117 LAVPTRAERKAIQEAKRAAKTAEKGEGAR 145 (556)
T ss_pred cccccHHHHhhHHHHHHHHHHhhhccccc
Confidence 55789999999999999999999887654
No 92
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=64.81 E-value=71 Score=36.47 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=52.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEcc----hHHHHHhhhccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVLL----SAVSYIMREVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~D----SAVsyiM~~VdkVLLG 600 (717)
+.|++-+..+.+..+|......|. +|++... .+.| ..+...|...||.++++.+ ..+...+..=+++|+
T Consensus 86 ~~v~fsSG~~Ai~~al~~ll~~Gd--~VI~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~- 160 (437)
T PRK05613 86 HAVAFASGQAAETAAILNLAGAGD--HIVTSPR--LYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFF- 160 (437)
T ss_pred eEEEeCCHHHHHHHHHHHhcCCCC--EEEECCC--ccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEE-
Confidence 344444444544444544443444 5666532 3333 3344567778999998862 234444443344444
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+.+...-+.+.. --.|+-+|+++|++|+|
T Consensus 161 ~e~~~Np~~~v~d--i~~I~~la~~~gi~liv 190 (437)
T PRK05613 161 GETFANPQADVLD--IPAVAEVAHRNQVPLIV 190 (437)
T ss_pred EECCCCCCCcccC--HHHHHHHHHHcCCeEEE
Confidence 2333222113333 45678889999999887
No 93
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=64.61 E-value=23 Score=38.83 Aligned_cols=90 Identities=13% Similarity=0.212 Sum_probs=59.2
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH--------HHHHhhhc
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA--------VSYIMREV 594 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA--------VsyiM~~V 594 (717)
+++|+-|...+++..|...|..| ..|.+.||++++|-... +-...++.
T Consensus 198 ~~~G~ditiia~G~~v~~al~Aa------------------------~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t 253 (327)
T CHL00144 198 VRPGNDITILTYSRMRHHVLQAV------------------------KVLVEKGYDPEIIDLISLKPLDLGTISKSVKKT 253 (327)
T ss_pred EEcCCCEEEEEccHHHHHHHHHH------------------------HHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhh
Confidence 44555555555556655555544 45666677777764433 33344455
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHh----CCCcEEecccCCcccc
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARA----FNVPVLAACETHKFCE 641 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~----~~VPVyV~cEtyKFs~ 641 (717)
..|| ++.++.+..-.|+..++.++.. ...||.-++-...|.+
T Consensus 254 ~~vv-----~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~ 299 (327)
T CHL00144 254 HKVL-----IVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTP 299 (327)
T ss_pred CcEE-----EEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCC
Confidence 5665 4678888888999999999888 4779988876666654
No 94
>PLN02656 tyrosine transaminase
Probab=64.41 E-value=88 Score=34.65 Aligned_cols=97 Identities=22% Similarity=0.384 Sum_probs=52.8
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch----------HHHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS----------AVSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS----------AVsyiM~ 592 (717)
+....+|+|.|.+..+..++......|. +|+|. .|.+.+...+..+ .|+.+.++... .+...+.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGA--NILLP--RPGFPIYELCAAF--RHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCCC--eEEEe--CCCCCcHHHHHHH--cCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 4455788888888776555554444443 45554 4666554443333 68887776531 1222222
Q ss_pred hccEEEEceeeEecCCCeecccchH-------HHHHHHHhCCCcEEe
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTA-------QVSLVARAFNVPVLA 632 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~-------~VALaAK~~~VPVyV 632 (717)
.-++++ ++.|- -|.+|+. .++-+|+.+++++++
T Consensus 168 ~~~~~v-----~l~~P--~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 168 QNTVAL-----VIINP--GNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred cCceEE-----EEECC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 212222 22222 3555544 466778889988775
No 95
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=64.33 E-value=10 Score=38.80 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccC
Q psy17541 296 QLKAERRAKQEQQRQAKAAALLEKTKT 322 (717)
Q Consensus 296 ~~kAERRA~QEaqRAaKa~~k~~~~~~ 322 (717)
.--+||.|.+.+||++|.+++.+...+
T Consensus 101 ~Qlaeakarv~a~r~~q~a~k~e~a~a 127 (208)
T COG3109 101 KQLAEAKARVQAQRAEQQAKKREEAPA 127 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Confidence 345788899999999999999887754
No 96
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=64.18 E-value=68 Score=34.66 Aligned_cols=94 Identities=12% Similarity=0.211 Sum_probs=51.9
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---------HH-HHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---------AV-SYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---------AV-syiM~ 592 (717)
+...++++|.|.+..+..++. +...| .|+|. .|.+.+.. ..+...|+++..++.. .+ ..+-+
T Consensus 70 ~~~~~i~it~Ga~~~l~~~~~-~l~~g---~viv~--~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (356)
T PRK08056 70 VPASWILAGNGETESIFAVVS-GLKPR---RAMIV--TPGFAEYR--RALQQVGCEIRRYSLREADGWQLTDAILEALTP 141 (356)
T ss_pred cChhhEEECCCHHHHHHHHHH-HhCCC---CEEEe--CCCcHHHH--HHHHHcCCeEEEEecccccCCCccHHHHHhccC
Confidence 444467888887776655554 44433 45554 36665432 2345578888777521 11 11223
Q ss_pred hccEEEEceeeEecCCCeecccch-------HHHHHHHHhCCCcEEe
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGT-------AQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT-------~~VALaAK~~~VPVyV 632 (717)
++..|++. ..-|.+|. ..|+-.|+.+++.+++
T Consensus 142 ~~k~v~l~--------~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 142 DLDCLFLC--------TPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCEEEEe--------CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 45555541 33455553 4466678888887765
No 97
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=63.96 E-value=21 Score=34.23 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=45.7
Q ss_pred CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCC
Q psy17541 549 GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNV 628 (717)
Q Consensus 549 Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~V 628 (717)
+...++--.+.+|..-|...|..|...|+++.++. +|.|+++ |.....--...++-.|+.+++
T Consensus 23 ~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i~-------~~~~~~~~~~~~~~~~~~~~~ 85 (196)
T cd00287 23 GGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVIS-------GLSPAPEAVLDALEEARRRGV 85 (196)
T ss_pred CCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEEe-------cccCcHHHHHHHHHHHHHcCC
Confidence 33334444456777888999999999999999888 4555554 433221223445567888999
Q ss_pred cEEecc
Q psy17541 629 PVLAAC 634 (717)
Q Consensus 629 PVyV~c 634 (717)
||++=.
T Consensus 86 ~v~~D~ 91 (196)
T cd00287 86 PVVLDP 91 (196)
T ss_pred eEEEeC
Confidence 987644
No 98
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.95 E-value=36 Score=30.49 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=45.7
Q ss_pred EEEcCCCCchhHHHHHHHHHhCCCcEEEE------cchH--HHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHh
Q psy17541 554 VIIVDGSPWYEGKEMLRRLVKHQVDCSYV------LLSA--VSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA 625 (717)
Q Consensus 554 VIVvESRP~~EGr~lA~~L~~~GI~vTyI------~DSA--VsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~ 625 (717)
|.|+-.++..++. +-..|.+.|...... .... +...+.++|.||+=.|.| +-.-+..+--.|+.
T Consensus 2 vliVGG~~~~~~~-~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v-------sH~~~~~vk~~akk 73 (97)
T PF10087_consen 2 VLIVGGREDRERR-YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV-------SHNAMWKVKKAAKK 73 (97)
T ss_pred EEEEcCCcccHHH-HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc-------ChHHHHHHHHHHHH
Confidence 3444444433332 344555677776666 4444 555667789998766544 44456677788999
Q ss_pred CCCcEEec
Q psy17541 626 FNVPVLAA 633 (717)
Q Consensus 626 ~~VPVyV~ 633 (717)
+++||+.+
T Consensus 74 ~~ip~~~~ 81 (97)
T PF10087_consen 74 YGIPIIYS 81 (97)
T ss_pred cCCcEEEE
Confidence 99999986
No 99
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=63.68 E-value=35 Score=32.28 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=54.0
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIG 600 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLG 600 (717)
.|..||.+|.+.+...++..++..|-. +|+|+ +|-......++..+ .+..+.++....+...+.++|.||-.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~-~i~i~-nRt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAK-EITIV-NRTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINA 82 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSS-EEEEE-ESSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEE-ECCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEe
Confidence 478999999999988888888877654 34443 35555556777777 56778888888888889999988654
No 100
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=63.64 E-value=64 Score=36.20 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=58.1
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLG 600 (717)
+.|+|-+-+..+..+|......|. +|++. .|.+.|- .+...+...|+.++++... ++-..+. +...|++
T Consensus 74 ~~v~~~sG~~Ai~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~l- 148 (418)
T TIGR01326 74 AALAVASGQAAITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFA- 148 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 567777777777777766655554 45554 4666552 3344566789999988642 3333333 4555555
Q ss_pred eeeEe-cCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALL-SNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVl-aNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+.+. ..|.+.. --.|+-+|+.++++++|
T Consensus 149 -e~p~NPtg~v~d---l~~I~~la~~~~i~liv 177 (418)
T TIGR01326 149 -ETIGNPAINVPD---IEAIAEVAHAHGVPLIV 177 (418)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 2221 1233332 24577779999999887
No 101
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=63.62 E-value=1.4e+02 Score=32.73 Aligned_cols=118 Identities=8% Similarity=0.091 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHH--cCCeeEEEEcCCCCchhHHH--HHHHHHhCCCcEEEEc
Q psy17541 508 VDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHE--KGTKFRVIIVDGSPWYEGKE--MLRRLVKHQVDCSYVL 583 (717)
Q Consensus 508 I~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e--~Gk~FrVIVvESRP~~EGr~--lA~~L~~~GI~vTyI~ 583 (717)
++.+++.|+...-- -...++++|-|.+..+..++..... ....-+|+|.+ |.+.+.. +.......|+++.++.
T Consensus 65 ~~~~r~~la~~~g~-~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~ 141 (401)
T PRK10874 65 YEAAREQVAQLLNA-PDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVKLP 141 (401)
T ss_pred HHHHHHHHHHHcCC-CCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEEEe
Confidence 34455566553321 0233466676665554444443311 11223677765 4444422 2223356799988875
Q ss_pred ch--------HHHHHh-hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 584 LS--------AVSYIM-REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 584 DS--------AVsyiM-~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.. .+...+ ++...|++ .+.-...|.+.. ...|+-+|+.+|++|+|
T Consensus 142 ~~~~~~~d~~~l~~~i~~~t~lv~i-~~~~n~tG~~~~---~~~i~~l~~~~g~~~iv 195 (401)
T PRK10874 142 LGADRLPDVDLLPELITPRTRILAL-GQMSNVTGGCPD---LARAITLAHQAGMVVMV 195 (401)
T ss_pred cCCCCcCCHHHHHHhcCcCcEEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 32 222222 23333333 333333454432 24577889999998876
No 102
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=63.51 E-value=60 Score=35.55 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=54.2
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EML-RRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA-~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLG 600 (717)
+.|++-+-+.++..+|......|. +|++.. |.+.|. .+. ..+...|+.+.++... .+...+. +...|++
T Consensus 57 ~a~~~~sG~~Ai~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 131 (369)
T cd00614 57 AALAFSSGMAAISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYV- 131 (369)
T ss_pred CEEEEcCHHHHHHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 566665555666666665544444 344433 555553 333 3455789999988654 3333343 3444544
Q ss_pred eeeEec-CCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLS-NGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVla-NG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+.+.. .|.+. . --.|+-+|+.+|++|+|
T Consensus 132 -e~~~np~g~~~-d--l~~i~~la~~~g~~liv 160 (369)
T cd00614 132 -ESPTNPTLKVV-D--IEAIAELAHEHGALLVV 160 (369)
T ss_pred -ECCCCCCCeec-C--HHHHHHHHHHcCCEEEE
Confidence 23322 23332 2 23677888999999887
No 103
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=63.48 E-value=91 Score=33.68 Aligned_cols=113 Identities=10% Similarity=0.179 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhccC-CCeEEEecCchHHHHHHHHH---HHcCCeeEEEEcCCCCchhHH-HHHHHHH-hCCCcEEEEc
Q psy17541 510 MAGNAICMFFHNKLAN-DDVILTYGCSSLVEKILLTA---HEKGTKFRVIIVDGSPWYEGK-EMLRRLV-KHQVDCSYVL 583 (717)
Q Consensus 510 ~A~e~Ia~~A~e~I~d-GdvILTyg~SStV~~vL~~A---~e~Gk~FrVIVvESRP~~EGr-~lA~~L~-~~GI~vTyI~ 583 (717)
.+++.|+...- ... .++++|.+.+..+..++... ...|. +|+++..- +.|. ..+..+. ..|+++++|.
T Consensus 47 ~~r~~la~~lg--~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~--~vl~~~~~--~~s~~~~~~~~~~~~g~~v~~i~ 120 (371)
T PF00266_consen 47 EAREALAKLLG--APPDEEVVFTSNGTEALNAVASSLLNPLKPGD--EVLVTSNE--HPSNRYPWEEIAKRKGAEVRVIP 120 (371)
T ss_dssp HHHHHHHHHHT--SSTTEEEEEESSHHHHHHHHHHHHHHHGTTTC--EEEEEESS--HHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHhcC--Cccccccccccccchhhhhhhhcccccccccc--cccccccc--ccccccccccccccchhhhcccc
Confidence 34555555432 333 56777877766655555555 23333 56665543 2332 2344444 7899999987
Q ss_pred c--------hHHHHHh-hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 584 L--------SAVSYIM-REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 584 D--------SAVsyiM-~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
. ..+...+ ++.+.|++-+ .-..+|. .+. --.|+-+||+++++++|
T Consensus 121 ~~~~~~~~~~~~~~~l~~~~~lv~~~~-~~~~tG~-~~p--i~~I~~~~~~~~~~~~v 174 (371)
T PF00266_consen 121 ADPGGSLDLEDLEEALNPDTRLVSISH-VENSTGV-RNP--IEEIAKLAHEYGALLVV 174 (371)
T ss_dssp EGTTSSCSHHHHHHHHHTTESEEEEES-BETTTTB-BSS--HHHHHHHHHHTTSEEEE
T ss_pred ccccchhhhhhhhhhhccccceEEeec-ccccccE-Eee--eceehhhhhccCCceeE
Confidence 4 2233333 3556665543 3334554 443 44678888999999988
No 104
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=63.45 E-value=95 Score=34.38 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=51.2
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHHH-HHHhCCCcEEEEcch---HHHHHhhhccEEEEce
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EMLR-RLVKHQVDCSYVLLS---AVSYIMREVSKVIIGA 601 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA~-~L~~~GI~vTyI~DS---AVsyiM~~VdkVLLGA 601 (717)
+.|++-+.+..+..++ .....|. +|++. .|.+.|- .+.. .+...|+.++++... .+-..+..=+++|+-.
T Consensus 64 ~~l~~~sG~~al~~~l-~ll~~Gd--~Vl~~--~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le 138 (378)
T TIGR01329 64 RAFAFSSGMAALDVIT-RLLNNGD--EIIAG--DDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLE 138 (378)
T ss_pred cEEEECCHHHHHHHHH-HHhCCCC--EEEEc--CCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 4555544444444333 3544443 56664 3556553 3333 456689999998743 3333333222333322
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
..--..|.+.. -..|+-+|+++|++|+|=
T Consensus 139 ~psnptg~v~d---l~~I~~la~~~g~~vivD 167 (378)
T TIGR01329 139 SPTNPLQKIVD---IRKISEMAHAQNALVVVD 167 (378)
T ss_pred CCCCCCCeeec---HHHHHHHHHHcCCEEEEE
Confidence 11112333332 345778899999988873
No 105
>PRK14012 cysteine desulfurase; Provisional
Probab=63.32 E-value=1.5e+02 Score=32.73 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=51.3
Q ss_pred CeEEEecCchHHHHHHHHHHH--cCCeeEEEEcCCCCchhH-HHHHHHHHhCCCcEEEEcch--------HHHHHhhhcc
Q psy17541 527 DVILTYGCSSLVEKILLTAHE--KGTKFRVIIVDGSPWYEG-KEMLRRLVKHQVDCSYVLLS--------AVSYIMREVS 595 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e--~Gk~FrVIVvESRP~~EG-r~lA~~L~~~GI~vTyI~DS--------AVsyiM~~Vd 595 (717)
++++|-|-+..+..+|..+.. .+..=+|++. .+.+.. ...++.|...|+.+.++... .+-..+..=+
T Consensus 68 ~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~--~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t 145 (404)
T PRK14012 68 EIVFTSGATESDNLAIKGAAHFYQKKGKHIITS--KTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDT 145 (404)
T ss_pred eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEe--cCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCC
Confidence 467776666554444433321 1222245554 334433 23455566679988887421 2333333223
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++++-.+.-...|.+. .+ -.|+-+|+.++++|+|
T Consensus 146 ~lv~~~~~~n~tG~~~-~~--~~I~~la~~~g~~viv 179 (404)
T PRK14012 146 ILVSIMHVNNEIGVIQ-DI--AAIGEICRERGIIFHV 179 (404)
T ss_pred EEEEEECcCCCccchh-hH--HHHHHHHHHcCCEEEE
Confidence 3333222222234333 22 4577889999999887
No 106
>PRK02947 hypothetical protein; Provisional
Probab=63.20 E-value=2e+02 Score=30.22 Aligned_cols=34 Identities=15% Similarity=-0.030 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCcEEEEcchHH-----------HHHhhhccEEEE
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSAV-----------SYIMREVSKVII 599 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSAV-----------syiM~~VdkVLL 599 (717)
..+++.+.+.|+++..|++..- +.+.+-+|.||.
T Consensus 123 i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 123 IEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred HHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 5789999999999999998763 577777898884
No 107
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=63.18 E-value=1.7e+02 Score=31.26 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=49.5
Q ss_pred hccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc---hHHHHHhhh---cc
Q psy17541 522 KLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL---SAVSYIMRE---VS 595 (717)
Q Consensus 522 ~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D---SAVsyiM~~---Vd 595 (717)
++...+.|++.+-+..+..+|......|. .|++. .|.+.+...+.. -.|.++..+.. ..+-.++.. ..
T Consensus 96 ~~~~~~~i~~~~g~~~~~~~l~~~~~~gd--~V~~~--~~~~~~~~~~~~--~~g~~~~~~~~~d~~~l~~~i~~~~~~~ 169 (385)
T PRK05958 96 WFGAERALLFSSGYAANLAVLTALAGKGD--LIVSD--KLNHASLIDGAR--LSRARVRRYPHNDVDALEALLAKWRAGR 169 (385)
T ss_pred HhCCCcEEEECcHHHHHHHHHHHhCCCCC--EEEEe--CccCHHHHHHHH--hcCCceEEeCCCCHHHHHHHHHhccCCC
Confidence 34344666665544444444433333333 44543 355554433333 36777766642 344445543 23
Q ss_pred EEEEceeeEec-CCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 596 KVIIGAHALLS-NGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 596 kVLLGAdaVla-NG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+++ ...+.. .|.+.. -..|+-+|+.|+++++|
T Consensus 170 ~lvi-~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~ 203 (385)
T PRK05958 170 ALIV-TESVFSMDGDLAP---LAELVALARRHGAWLLV 203 (385)
T ss_pred eEEE-EEecccCCCCcCC---HHHHHHHHHHhCCEEEE
Confidence 3333 222222 222221 35688889999997765
No 108
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=62.88 E-value=37 Score=34.05 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=56.7
Q ss_pred EEEecCchHHHHHHHHH-HHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc---hHHHHHhhhccEEEEceeeE
Q psy17541 529 ILTYGCSSLVEKILLTA-HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL---SAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A-~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D---SAVsyiM~~VdkVLLGAdaV 604 (717)
||++|-+..+-.-+.++ ...+..+++++-+. -...+..|...|+.+..... .++...++.+|.||+--...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-----~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP-----SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS-----HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEecc-----chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 67787765444433333 33344444444333 33567889999997664332 45677778888876533221
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
. -.-.-....++-+|++.||+.||..+.
T Consensus 76 ~----~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 76 H----PSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp C----CCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred h----hhhhhhhhhHHHhhhccccceEEEEEe
Confidence 1 111223456778888889999996554
No 109
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=62.85 E-value=99 Score=27.64 Aligned_cols=93 Identities=15% Similarity=0.122 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCeeEEE-EcCCCC---chhHHH----HHHHHHhCCCcEEEEcchHHHH----Hhh--hccEEEEceee
Q psy17541 538 VEKILLTAHEKGTKFRVI-IVDGSP---WYEGKE----MLRRLVKHQVDCSYVLLSAVSY----IMR--EVSKVIIGAHA 603 (717)
Q Consensus 538 V~~vL~~A~e~Gk~FrVI-VvESRP---~~EGr~----lA~~L~~~GI~vTyI~DSAVsy----iM~--~VdkVLLGAda 603 (717)
|...+..|...+-.+.++ |.+... ..++.. +...+.+.|+++..+....++. +.. ++|.+++|++.
T Consensus 16 l~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~ 95 (124)
T cd01987 16 IRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSR 95 (124)
T ss_pred HHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCC
Confidence 333334444445566544 444332 123332 2344556788877665533322 222 48999999985
Q ss_pred EecCCCeec-ccchHHHHHHHHhCCCcEEec
Q psy17541 604 LLSNGAVMS-RAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 604 VlaNG~VvN-KiGT~~VALaAK~~~VPVyV~ 633 (717)
- |.+-. -.|+..--++-+.-++||+|+
T Consensus 96 ~---~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 96 R---SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred C---chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 3 22222 345444444444458999986
No 110
>PRK05764 aspartate aminotransferase; Provisional
Probab=62.67 E-value=75 Score=34.48 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=52.6
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch----------HHHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS----------AVSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS----------AVsyiM~ 592 (717)
+..+.+++|.|.+..+..++......|. .|++ ++ |.+.+.. ..+...|+++..+... .+...+.
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~-~~-p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMALLDPGD--EVII-PA-PYWVSYP--EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHHhcCCCC--EEEe-cC-CCCcchH--HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 3445688888887776666665544443 3444 33 6555532 2234568888776532 2222222
Q ss_pred -hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..|++- +---..|.++..-=--.++-+|+.|+++++|
T Consensus 163 ~~~~~v~~~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 163 PKTKALILN-SPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred ccceEEEEE-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 23333331 1111123333322223566778899988776
No 111
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=62.43 E-value=11 Score=38.17 Aligned_cols=142 Identities=14% Similarity=0.071 Sum_probs=85.4
Q ss_pred EEcCCCCchhH---HHHHHHHHhCCCcEEEEcchHHHH-HhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcE
Q psy17541 555 IIVDGSPWYEG---KEMLRRLVKHQVDCSYVLLSAVSY-IMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPV 630 (717)
Q Consensus 555 IVvESRP~~EG---r~lA~~L~~~GI~vTyI~DSAVsy-iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPV 630 (717)
|+--||-+.-+ ..+|..|.+.|+.|.+...+++.. -+...|.|+|||..-+ |..-..++...-.-...-...|+
T Consensus 5 IlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~ 82 (175)
T COG4635 5 ILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPS 82 (175)
T ss_pred EEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCc
Confidence 33345544444 367888889999999999999987 5678999999996543 56666677766666666677776
Q ss_pred Eecc--cCCcccccc-cCCcccccccCCcccccccccccccccc----CCCccccccceeccCCCCccEEEeCCCCcCCC
Q psy17541 631 LAAC--ETHKFCERV-QTDALVFNELGDPNELISDKSAAKNWKS----LAHLTPLSLTYDITPSHLVTAVITELAIVPCT 703 (717)
Q Consensus 631 yV~c--EtyKFs~rv-~~Ds~v~NEl~dP~EL~~~~~~l~~~~~----~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPs 703 (717)
-+.| .+|.--.+. .....+--++.. ..|.. .=+-.+..|.|+|..--+|..|+.=.|-.+-+
T Consensus 83 A~f~vnl~a~k~k~~~e~~~yv~kfl~~-----------~~WqP~~~avfgGal~y~ry~w~D~~miklImk~~Gge~dt 151 (175)
T COG4635 83 AFFSVNLTARKEKRTPETNSYVRKFLMK-----------SPWQPVAIAVFGGALRYPRYRWFDRFMIKLIMKMSGGETDT 151 (175)
T ss_pred eEEEeehhhcccccCchHHHHHHHHHhc-----------CCCchHHHHHhcccccCCccchHHHHHHHHhhcccCCCCCC
Confidence 5543 333211111 111111111111 12320 00122445678887777888888888877776
Q ss_pred ChhHHh
Q psy17541 704 SVPVVL 709 (717)
Q Consensus 704 SVpvVL 709 (717)
+=++..
T Consensus 152 ~keiey 157 (175)
T COG4635 152 SKEIEY 157 (175)
T ss_pred CCCccc
Confidence 655543
No 112
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=62.05 E-value=1.1e+02 Score=32.90 Aligned_cols=100 Identities=11% Similarity=0.085 Sum_probs=50.2
Q ss_pred CeEEEecC-chHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch--------HHHHHhhhcc--
Q psy17541 527 DVILTYGC-SSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS--------AVSYIMREVS-- 595 (717)
Q Consensus 527 dvILTyg~-SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS--------AVsyiM~~Vd-- 595 (717)
++|+..|. |..+..++......|. +|+|.+ +..-|..+...+...|+++.+|... ++...+..-+
T Consensus 57 ~~i~~~~~gt~~l~~~~~~l~~~~~--~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~ 132 (368)
T PRK13479 57 TCVPLQGSGTFSVEAAIGSLVPRDG--KVLVPD--NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRI 132 (368)
T ss_pred eEEEEcCCcHHHHHHHHHhccCCCC--eEEEEe--CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCC
Confidence 44545544 4455555555543332 455543 3333433455566789998888643 1222222111
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
+++.-.+.=...|.+.. ...|+-+|+.++++|+|=
T Consensus 133 ~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD 167 (368)
T PRK13479 133 THVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVD 167 (368)
T ss_pred cEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEE
Confidence 12222221122343332 357888889999877764
No 113
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=61.75 E-value=1.7e+02 Score=30.63 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHHHhCCCcEEEEcchHHHH----HhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 569 LRRLVKHQVDCSYVLLSAVSY----IMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 569 A~~L~~~GI~vTyI~DSAVsy----iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
...|...|+++.+..|..... .+.+=|.||+ +.-.|.- --+..++-.|+..|+||++++.
T Consensus 147 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~D~vI~----iS~sG~t---~~~~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 147 QNKFFRFNVPVVYFDDIVMQRMSCMNSSDGDVVVL----ISHTGRT---KSLVELAQLARENGATVIAITS 210 (284)
T ss_pred HHHHHhcCCceEecCCHHHHHHHHHhCCCCCEEEE----EeCCCCC---HHHHHHHHHHHHcCCeEEEECC
Confidence 344556788888777654322 2334455552 3334442 2266788899999999999985
No 114
>PLN02409 serine--glyoxylate aminotransaminase
Probab=61.74 E-value=60 Score=35.94 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=50.1
Q ss_pred CeEEEecCc-hHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch--------HHHHHhh-----
Q psy17541 527 DVILTYGCS-SLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS--------AVSYIMR----- 592 (717)
Q Consensus 527 dvILTyg~S-StV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS--------AVsyiM~----- 592 (717)
++|++-+.+ ..+..++...+..|. +|+|.+ |..-|...+..+...|+++.++... .+-..+.
T Consensus 61 ~~vi~~~~gt~a~~~a~~~~~~~Gd--~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~ 136 (401)
T PLN02409 61 TPFIFPTTGTGAWESALTNTLSPGD--KVVSFR--IGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNH 136 (401)
T ss_pred CEEEEeCCcHHHHHHHHHhcCCCCC--EEEEeC--CCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCC
Confidence 444444433 333334444433343 566666 4444554555566678888877532 2333333
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHH--HHhCCCcEEe
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLV--ARAFNVPVLA 632 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALa--AK~~~VPVyV 632 (717)
++..|++ .+.-...|.++. -..++-+ |+.+|++++|
T Consensus 137 ~~k~v~~-~~~~~~tG~~~~---~~~i~~l~~~~~~g~~~vv 174 (401)
T PLN02409 137 KIKAVCV-VHNETSTGVTND---LAGVRKLLDCAQHPALLLV 174 (401)
T ss_pred CccEEEE-EeecccccccCC---HHHHHHHHhhhccCcEEEE
Confidence 2344444 444444555543 2234455 8888887776
No 115
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=61.66 E-value=67 Score=36.10 Aligned_cols=103 Identities=23% Similarity=0.327 Sum_probs=54.3
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL----------SAVSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D----------SAVsyiM~ 592 (717)
+...++|+|.|.+..+..++......|. +|+|. +|.+.....+..+ .|+.+.++.. .++-.++.
T Consensus 115 ~~~~~v~it~G~~~al~l~~~~l~~~Gd--~Vlv~--~P~y~~y~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 115 LSTDDIYLTAGCAQAIEIIMSVLAQPGA--NILLP--RPGYPLYEARAVF--SGLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCccHHHHHHH--cCCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 4456799999998887666665544443 45554 4766654333333 5776666542 22322222
Q ss_pred -hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+...+++-- -=-..|.++++-=-..|+-+|++++++|++
T Consensus 189 ~~~~~i~i~~-P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 189 ENTVAMVIIN-PNNPCGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred cCceEEEEeC-CCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 222222211 111223333332234466678899988775
No 116
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=61.23 E-value=1.9e+02 Score=30.98 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=49.1
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHHHHH-HhCCCcEEEEcchH--------HHHHhh-hcc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EMLRRL-VKHQVDCSYVLLSA--------VSYIMR-EVS 595 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA~~L-~~~GI~vTyI~DSA--------VsyiM~-~Vd 595 (717)
.+++|.|.+..+..++......| -+|++.+ +.+.+. .....+ ...|+++.++.... +-..+. +..
T Consensus 64 ~v~~~~g~t~al~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~ 139 (376)
T TIGR01977 64 HVVFTNNATTALNIALKGLLKEG--DHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTK 139 (376)
T ss_pred eEEEeCCHHHHHHHHHHhccCCC--CEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCe
Confidence 56777777666555554433333 3566644 333332 112223 33488888775321 222222 223
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.| +-.+.-...|.++. + -.|+-+|+.++++|+|
T Consensus 140 ~v-~~~~~~n~tG~~~~-~--~~i~~l~~~~~~~liv 172 (376)
T TIGR01977 140 LI-VVSHASNVTGTILP-I--EEIGELAQENGIFFIL 172 (376)
T ss_pred EE-EEECCCCCccccCC-H--HHHHHHHHHcCCEEEE
Confidence 33 32222233454443 2 3577788999988876
No 117
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=61.18 E-value=49 Score=35.76 Aligned_cols=94 Identities=15% Similarity=0.031 Sum_probs=56.5
Q ss_pred ccCCCeEEEecCchHHHHHHHHH-HHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHh-hhccEEEEc
Q psy17541 523 LANDDVILTYGCSSLVEKILLTA-HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIM-REVSKVIIG 600 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A-~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM-~~VdkVLLG 600 (717)
+...++++|.|.+..+..++... ...|. .|+ ++ .|.+-+...+ +...|..+..+.| +..+- .+...|
T Consensus 78 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl-~~-~p~y~~~~~~--~~~~g~~~~~v~~--~~~l~~~~~~~v--- 146 (357)
T TIGR03539 78 LDPTAVLPVIGTKELVAWLPTLLGLGPGD--TVV-IP-ELAYPTYEVG--ALLAGATPVAADD--PTELDPVGPDLI--- 146 (357)
T ss_pred CCcCeEEEccChHHHHHHHHHHHcCCCCC--EEE-EC-CCCcHHHHHH--HHhcCCEEeccCC--hhhcCccCccEE---
Confidence 55668999999999877665544 23343 344 44 6777665433 3346888777753 11111 122233
Q ss_pred eeeEecCCCeecccchH-------HHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTA-------QVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~-------~VALaAK~~~VPVyV 632 (717)
+-+ ...|..|.. .++-+|+++++++++
T Consensus 147 ----~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (357)
T TIGR03539 147 ----WLN-SPGNPTGRVLSVDELRAIVAWARERGAVVAS 180 (357)
T ss_pred ----EEe-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 323 366777753 367788999998885
No 118
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=60.89 E-value=42 Score=32.77 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhC-CCcEEEEcc------hHHHHHhh--hccEEEEceeeEecCC
Q psy17541 538 VEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKH-QVDCSYVLL------SAVSYIMR--EVSKVIIGAHALLSNG 608 (717)
Q Consensus 538 V~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~-GI~vTyI~D------SAVsyiM~--~VdkVLLGAdaVlaNG 608 (717)
+..++....+.=..|+++.+++ +++.|.+. ||+|+.+.. ..+..++. ++++||-=.|-. |
T Consensus 19 l~~~a~~l~~ll~Gf~l~AT~g--------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~---~ 87 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELYATGT--------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPL---T 87 (142)
T ss_pred HHHHHHHHHHHhcCCEEEEeCh--------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCC---C
Confidence 3444444444311488888776 78889999 999988741 11333333 688886532211 2
Q ss_pred CeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 609 AVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 609 ~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
.-......+.|=-+|-.|+||++-.-.+-
T Consensus 88 ~~~~~~D~~~IRR~Av~~~IP~~T~l~tA 116 (142)
T PRK05234 88 AQPHDPDVKALLRLADVWNIPVATNRATA 116 (142)
T ss_pred CCcccchHHHHHHHHHHcCCCEEcCHHHH
Confidence 21213345678888999999998754443
No 119
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=60.63 E-value=1e+02 Score=34.34 Aligned_cols=97 Identities=14% Similarity=0.238 Sum_probs=55.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHHHHHHhCCCcEEEEcc--hHHHHHhh--hccEEEEce
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEMLRRLVKHQVDCSYVLL--SAVSYIMR--EVSKVIIGA 601 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA~~L~~~GI~vTyI~D--SAVsyiM~--~VdkVLLGA 601 (717)
+.|+|-|-...+..+|......|. +|++. .|.+.+ ..++..+...|+++.++.. ..+...+. +...|++
T Consensus 70 ~~l~~~sG~~Ai~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i-- 143 (385)
T PRK08574 70 DALAFNSGMAAISTLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI-- 143 (385)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE--
Confidence 566665555555555555554454 45543 456655 3455556678998877532 34444444 3444443
Q ss_pred eeEe-cCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALL-SNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVl-aNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+.+. .+|.++. --.|+-+|+.++++|+|
T Consensus 144 e~p~NPtG~v~d---l~~I~~la~~~gi~liv 172 (385)
T PRK08574 144 ETMTNPTLKVID---VPEVAKAAKELGAILVV 172 (385)
T ss_pred ECCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 3332 2455554 23677889999998886
No 120
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=60.53 E-value=1.2e+02 Score=36.16 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=41.0
Q ss_pred HHHHHHhCCCcEEEEcchHHHH----HhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 568 MLRRLVKHQVDCSYVLLSAVSY----IMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 568 lA~~L~~~GI~vTyI~DSAVsy----iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
+...|...|+++..+.|..... .|.+=|.||+ |.-.|.--. +..++-.|+..|+||++++..
T Consensus 486 ~~~~l~~lg~~~~~~~d~~~~~~~~~~l~~~DvvI~----iS~sG~t~e---~i~~~~~Ak~~Ga~vIaIT~~ 551 (638)
T PRK14101 486 AHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVA----VSKSGRAPE---LLRVLDVAMQAGAKVIAITSS 551 (638)
T ss_pred HHHHHhcCCceEEEcCCHHHHHHHHhcCCCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCeEEEEcCC
Confidence 3445666778777777655433 2445576665 334443222 778889999999999999973
No 121
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.50 E-value=49 Score=38.04 Aligned_cols=91 Identities=23% Similarity=0.214 Sum_probs=56.8
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcee
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAH 602 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAd 602 (717)
+..|..|+++|.+..=+.+++.++..| .+|++.|.+|.. ...|.+.|+.+..... . ...+..+|.||+..
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~~-----~~~l~~~g~~~~~~~~-~-~~~l~~~D~VV~Sp- 78 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPDA-----LRPHAERGVATVSTSD-A-VQQIADYALVVTSP- 78 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHHH-----HHHHHhCCCEEEcCcc-h-HhHhhcCCEEEECC-
Confidence 446788999988865455555555556 578889977531 2346677885532211 1 22346677776543
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 603 ALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 603 aVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
| +-- ..++-..|++.|+||+=
T Consensus 79 -----G-i~~---~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 79 -----G-FRP---TAPVLAAAAAAGVPIWG 99 (488)
T ss_pred -----C-CCC---CCHHHHHHHHCCCcEee
Confidence 3 211 35677888899999984
No 122
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=60.33 E-value=1.5e+02 Score=31.86 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=55.3
Q ss_pred CeEEEecCchHHHHHHHHHHHc-CCeeEEEEcCCCCchhHH-HHHHHHH-hCCCcEEEEcch--------HHHHHhh-hc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEK-GTKFRVIIVDGSPWYEGK-EMLRRLV-KHQVDCSYVLLS--------AVSYIMR-EV 594 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~-Gk~FrVIVvESRP~~EGr-~lA~~L~-~~GI~vTyI~DS--------AVsyiM~-~V 594 (717)
.+++|-|.+..+..++..+... +..-+|++.+ |.+-+. ...+.+. ..|+.+.+|... .+...+. +.
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 140 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERT 140 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc
Confidence 5677777777766666555431 1233566654 444442 2223333 678888888532 1222222 44
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
..|++. +.-...|.+.. + -.|+-+|++++++|+|=
T Consensus 141 ~~v~~~-~~~~~tG~~~~-~--~~i~~~~~~~~~~li~D 175 (373)
T cd06453 141 KLVAVT-HVSNVLGTINP-V--KEIGEIAHEAGVPVLVD 175 (373)
T ss_pred eEEEEe-CcccccCCcCC-H--HHHHHHHHHcCCEEEEE
Confidence 455442 22223454443 2 46888889999998874
No 123
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=59.91 E-value=86 Score=33.72 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=56.4
Q ss_pred ccCC-CeEEEecCchHHHHHHHHHHHcCC-eeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch-H---------HHHH
Q psy17541 523 LAND-DVILTYGCSSLVEKILLTAHEKGT-KFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS-A---------VSYI 590 (717)
Q Consensus 523 I~dG-dvILTyg~SStV~~vL~~A~e~Gk-~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS-A---------Vsyi 590 (717)
+..+ .+|+|.|.+..+..++......|. .-.|++ + +|.+.+...+. ...|+.+..+... . +-..
T Consensus 57 ~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~-~-~p~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 132 (350)
T TIGR03537 57 LDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIF-G-TPGYPVYERGA--LFAGGEPTAVKLKKEDGFLLRLEKVEKS 132 (350)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEE-c-CCCCcchHHHH--HhcCCEEEEcccCcccCCccCHHHHHHh
Confidence 4444 799999999887666655544332 124444 3 58877754433 4478888777542 1 1122
Q ss_pred hhhccEEEEceeeEecCCCeecccc-------hHHHHHHHHhCCCcEEe
Q psy17541 591 MREVSKVIIGAHALLSNGAVMSRAG-------TAQVSLVARAFNVPVLA 632 (717)
Q Consensus 591 M~~VdkVLLGAdaVlaNG~VvNKiG-------T~~VALaAK~~~VPVyV 632 (717)
+.+-.++ |+-+ ..-|..| -..++-+|+.+++.+++
T Consensus 133 ~~~~~~~------i~i~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 133 ILEETKI------VWIN-YPHNPTGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred hhhccEE------EEEe-CCCCCcCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 2221222 2222 2457777 34566778889987775
No 124
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=59.64 E-value=1.1e+02 Score=29.91 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIG 600 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLG 600 (717)
..+++.+.+.|+++..|+++.-+.+.+.+|.+|.-
T Consensus 92 i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~ 126 (179)
T cd05005 92 VNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVI 126 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence 56788899999999999999888888889987753
No 125
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=59.26 E-value=92 Score=34.49 Aligned_cols=50 Identities=12% Similarity=0.202 Sum_probs=34.5
Q ss_pred chHHHHHhhhccEEEEceee----EecCCCeeccc----chHHHHHHHHhCCCcEEec
Q psy17541 584 LSAVSYIMREVSKVIIGAHA----LLSNGAVMSRA----GTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 584 DSAVsyiM~~VdkVLLGAda----VlaNG~VvNKi----GT~~VALaAK~~~VPVyV~ 633 (717)
..++-.+|..-..||++.+. +..||.++|-- +=...+++|...+.-.+++
T Consensus 175 ~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIi 232 (313)
T PRK12454 175 IEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFII 232 (313)
T ss_pred HHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEE
Confidence 35677777777778888775 44677766643 3455578999998875554
No 126
>PRK15482 transcriptional regulator MurR; Provisional
Probab=59.20 E-value=1.3e+02 Score=31.88 Aligned_cols=38 Identities=13% Similarity=-0.151 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEce
Q psy17541 564 EGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 564 EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
+-..+++.+.+.|+++..|+++..+.+-+.+|.+|.-.
T Consensus 197 ~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~ 234 (285)
T PRK15482 197 EIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTV 234 (285)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcC
Confidence 34578888999999999999999999988999998743
No 127
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=59.06 E-value=1.4e+02 Score=33.13 Aligned_cols=97 Identities=14% Similarity=0.216 Sum_probs=53.2
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HH-HHHHHHhCCCcEEEEcchHHH---HHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KE-MLRRLVKHQVDCSYVLLSAVS---YIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~-lA~~L~~~GI~vTyI~DSAVs---yiM~-~VdkVLLG 600 (717)
+++++-+-+..+..+|......|. +|++. ++.+.+ .. +...+...|+.++++....+. ..+. +...|++-
T Consensus 71 ~~~~~~sG~~Ai~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le 146 (380)
T TIGR01325 71 RAVATATGMSAIQAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE 146 (380)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 566665555666666654444554 45553 455544 22 334567789999998654332 2332 33344431
Q ss_pred eeeEe-cCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALL-SNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVl-aNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
... ..|.+.. --.|+-+|+.+|++|+|
T Consensus 147 --~p~np~g~~~d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 147 --TPSNPLGELVD---IAALAELAHAIGALLVV 174 (380)
T ss_pred --CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 111 1233322 25577778999999886
No 128
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=58.79 E-value=2.7e+02 Score=30.22 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=36.9
Q ss_pred eEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcch---------HHHHHhhhccEEEEceeeEecCCCeecccchHHHH
Q psy17541 552 FRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLS---------AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVS 620 (717)
Q Consensus 552 FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DS---------AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VA 620 (717)
-+|++.+ |.+-+. .+.......|+++.++... .+...+..-+++++-.+.-...|.+.. --.|+
T Consensus 105 d~vl~~~--~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~i~ 179 (397)
T TIGR01976 105 DEVIVTR--LDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVD---LAAIT 179 (397)
T ss_pred CEEEEcC--CchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCC---HHHHH
Confidence 3566654 333332 1223345578888877532 122222222233333222233444432 34577
Q ss_pred HHHHhCCCcEEe
Q psy17541 621 LVARAFNVPVLA 632 (717)
Q Consensus 621 LaAK~~~VPVyV 632 (717)
-+|+.+|+.|+|
T Consensus 180 ~~~~~~~~~~iv 191 (397)
T TIGR01976 180 ELVHAAGALVVV 191 (397)
T ss_pred HHHHHcCCEEEE
Confidence 778888887766
No 129
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=58.56 E-value=40 Score=37.58 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=54.7
Q ss_pred hhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH--------HHHHhh
Q psy17541 521 NKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA--------VSYIMR 592 (717)
Q Consensus 521 e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA--------VsyiM~ 592 (717)
..+++|+-|+.+++++.|...|..| ..|.+.||+|++|.... +-...+
T Consensus 223 ~v~r~G~dvtIia~G~~v~~Al~Aa------------------------~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~ 278 (356)
T PLN02683 223 KIEREGKDVTIVAFSKMVGYALKAA------------------------EILAKEGISAEVINLRSIRPLDRDTINASVR 278 (356)
T ss_pred EEEEcCCCEEEEEccHHHHHHHHHH------------------------HHHHhcCCCEEEEECCCCCccCHHHHHHHHh
Confidence 3456777677777777776666544 34455566655554322 333444
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHh----CCCcEEeccc
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA----FNVPVLAACE 635 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~----~~VPVyV~cE 635 (717)
+.+.|| +++++....-.|+...+.++.. ...|+.-++-
T Consensus 279 ~t~~vv-----tvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~ 320 (356)
T PLN02683 279 KTNRLV-----TVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAG 320 (356)
T ss_pred hcCeEE-----EEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEecc
Confidence 566664 5667777777999999999887 3568776654
No 130
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=58.49 E-value=1.4e+02 Score=32.91 Aligned_cols=117 Identities=11% Similarity=0.126 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHH--HcCCeeEEEEcCCCCchhHH-HHHHHH-HhCCCcEEEEcc
Q psy17541 509 DMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAH--EKGTKFRVIIVDGSPWYEGK-EMLRRL-VKHQVDCSYVLL 584 (717)
Q Consensus 509 ~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~--e~Gk~FrVIVvESRP~~EGr-~lA~~L-~~~GI~vTyI~D 584 (717)
..+++.|+++... ....++|+|.|.+..+..++.... .....-+|++.+. .+.+- .....+ ...|+++.++..
T Consensus 70 ~~~r~~la~~~~~-~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~--~~~s~~~~~~~~~~~~g~~v~~v~~ 146 (406)
T PRK09295 70 ENVRKQAALFINA-RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEM--EHHANIVPWQMLCARVGAELRVIPL 146 (406)
T ss_pred HHHHHHHHHHcCc-CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcc--hhhHHHHHHHHHHHHcCcEEEEEec
Confidence 3355556553211 123468888777665444433210 1112235666652 22221 112223 457999888863
Q ss_pred --------hHHHHHhh-hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 585 --------SAVSYIMR-EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 585 --------SAVsyiM~-~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
..+...+. +...|++. +.=...|.++. ...|+-+|+.++++|+|
T Consensus 147 ~~~~~~d~~~l~~~i~~~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~viv 199 (406)
T PRK09295 147 NPDGTLQLETLPALFDERTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKVLV 199 (406)
T ss_pred CCCCCCCHHHHHHhcCCCcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEEEE
Confidence 22333332 34445443 33344555543 24577888999987776
No 131
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=58.46 E-value=29 Score=33.82 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=23.3
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHH
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLR 570 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~ 570 (717)
+|-||-....+..+|.........++|||+|..-...-...++
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~ 44 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR 44 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh
Confidence 3555555566666666655444556777666444333344444
No 132
>PRK06836 aspartate aminotransferase; Provisional
Probab=58.42 E-value=1e+02 Score=33.80 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=55.9
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---------HHHHHh-h
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---------AVSYIM-R 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---------AVsyiM-~ 592 (717)
+....+|+|.|.+..+..++......|. .|++.+ |.+.+.. ..+...|+++.++... .+.-.+ .
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vli~~--p~~~~~~--~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~ 167 (394)
T PRK06836 94 LTADHIVMTCGAAGALNVALKAILNPGD--EVIVFA--PYFVEYR--FYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP 167 (394)
T ss_pred CCcCcEEEeCChHHHHHHHHHHhcCCCC--EEEEcC--CCCccHH--HHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc
Confidence 4455688888887775555554433332 455543 7776643 3345679998887532 122222 2
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHh------CCCcEEe
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA------FNVPVLA 632 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~------~~VPVyV 632 (717)
++..|++- +.--..|.++...--..++-+|+. |++++++
T Consensus 168 ~~~~v~~~-~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~ 212 (394)
T PRK06836 168 KTKAVIIN-SPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLIS 212 (394)
T ss_pred CceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 34444442 233333555544444556666766 6766664
No 133
>PRK05968 hypothetical protein; Provisional
Probab=57.98 E-value=1.5e+02 Score=33.07 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=52.4
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-H-HHHHHHHhCCCcEEEEcch---HHHHHhhhccEEEEce
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-K-EMLRRLVKHQVDCSYVLLS---AVSYIMREVSKVIIGA 601 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r-~lA~~L~~~GI~vTyI~DS---AVsyiM~~VdkVLLGA 601 (717)
..|++-+-+..+..+|......|. +|++.+ |.+.+ . .+...+...|+++.++... .+-..+++...|++-
T Consensus 80 ~av~~~sG~~Ai~~al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie- 154 (389)
T PRK05968 80 DARGFASGMAAISSTVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLE- 154 (389)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEE-
Confidence 455554333444444443334454 455543 45544 2 2334566789999987532 343344555555551
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
. ..|.++...=-..|+-+|+.+|++|+|
T Consensus 155 -~--pt~~~~~~~dl~~i~~la~~~gi~viv 182 (389)
T PRK05968 155 -S--PTSWVFELQDVAALAALAKRHGVVTMI 182 (389)
T ss_pred -C--CCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 1 223333333334567788999998887
No 134
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=57.95 E-value=35 Score=40.57 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=60.8
Q ss_pred ccCCCeEEEecCchHHHHHH-HHHHHcCCeeEEEEcCCCCchhHHHHHHHHHh-----CC----CcEEEEc-c----hHH
Q psy17541 523 LANDDVILTYGCSSLVEKIL-LTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK-----HQ----VDCSYVL-L----SAV 587 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL-~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~-----~G----I~vTyI~-D----SAV 587 (717)
..+|.+||+.|-++-+-..| ..+.+.| ++|+++. |-......++..|.+ .| ..+.++. | ..+
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~-Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGV-RSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEe-CCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 45788999999876665444 4455556 4566553 322223334444432 12 1123221 1 334
Q ss_pred HHHhhhccEEEEceeeEecC------CCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 588 SYIMREVSKVIIGAHALLSN------GAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 588 syiM~~VdkVLLGAdaVlaN------G~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
...+..+|.||..|-....+ -.-+|..|+..+.-+|+..++.-||+.-+.
T Consensus 154 ~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSi 209 (576)
T PLN03209 154 GPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSL 209 (576)
T ss_pred HHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 45567788877654221100 011356788888888888887766655443
No 135
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=57.92 E-value=58 Score=33.74 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=55.1
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHH----------h-hh
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYI----------M-RE 593 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyi----------M-~~ 593 (717)
+..+++|.|-+..+..++..+...| -+|++. +|.+-+. ...+...|+.+.++....-+.. . ++
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~g--~~vl~~--~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNPG--DEVLVP--DPTYPGY--EAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCCC--CEEEEc--CCCchhH--HHHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc
Confidence 4467888777777666666554333 345553 3444443 3344556777777665432211 1 24
Q ss_pred ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 594 VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 594 VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
+..|++-. .-...|.++.----..++-+|+.+|++|+|=
T Consensus 133 ~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD 171 (350)
T cd00609 133 TKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISD 171 (350)
T ss_pred ceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEEEEe
Confidence 55555433 3333454443222234456789999998873
No 136
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=57.55 E-value=99 Score=33.84 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=53.6
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch----------HHHHHh-hhcc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS----------AVSYIM-REVS 595 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS----------AVsyiM-~~Vd 595 (717)
.+++|.|.+..+..++......|....|++. .|.+.+.... ....|+++..+... .+-..+ .++.
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ 167 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcce
Confidence 4778888888877666665555654345443 5777775433 33468777776531 111111 2344
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
.|++- .-=-.-|.+++.-=-..++-+|+.|++.|+
T Consensus 168 ~i~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 168 LLFVC-SPGNPTGAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred EEEEe-CCCCCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence 44431 110111333333223567777888887554
No 137
>PRK09932 glycerate kinase II; Provisional
Probab=57.41 E-value=12 Score=42.15 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=38.8
Q ss_pred HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCccc
Q psy17541 586 AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFC 640 (717)
Q Consensus 586 AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs 640 (717)
.+-..|..+|.||.|=-++-.- ++.. -..+.||-.|+.|+||||++|.+....
T Consensus 277 ~l~~~l~~ADlVITGEG~~D~Q-t~~G-K~p~~Va~~A~~~~~Pvi~i~G~~~~~ 329 (381)
T PRK09932 277 NLEQAVQGAALVITGEGRIDSQ-TAGG-KAPLGVASVAKQFNVPVIGIAGVLGDG 329 (381)
T ss_pred ChHHHhccCCEEEECCCccccc-ccCC-ccHHHHHHHHHHcCCCEEEEecccCCC
Confidence 3456788999999997665332 2333 345678889999999999999987543
No 138
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=57.12 E-value=1.5e+02 Score=32.41 Aligned_cols=110 Identities=12% Similarity=0.149 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhc-cCCCeEEEec-CchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-c
Q psy17541 508 VDMAGNAICMFFHNKL-ANDDVILTYG-CSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-L 584 (717)
Q Consensus 508 I~~A~e~Ia~~A~e~I-~dGdvILTyg-~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-D 584 (717)
++.+++.+++..- . .+..+|+|-| -+..++.++......++...++++ +|+. ...+..+...|+++.++. +
T Consensus 46 ~~~~r~~l~~l~~--~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~--g~~~--~~~~~~a~~~g~~~~~~~~~ 119 (355)
T cd00611 46 VNEAESDLRELLN--IPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT--GAWS--AKAAKEAKRYGGVVVIVAAK 119 (355)
T ss_pred HHHHHHHHHHHhC--CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC--CHHH--HHHHHHHHhcCCCcEEEecc
Confidence 3445555555332 2 2346888888 445555555554433445444443 5654 344555567799988876 2
Q ss_pred hH------HH---HHh-hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 585 SA------VS---YIM-REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 585 SA------Vs---yiM-~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.. .. ..+ ++.+ +|.-+|.-...|.++. .+++.||+.|+|
T Consensus 120 ~~g~~~~~~~~~~~~~~~~~~-lV~~~h~~t~tG~~~~--------~i~~~~g~~~~V 168 (355)
T cd00611 120 EEGKYTKIPDVETWDLAPDAA-YVHYCSNETIHGVEFD--------EVPDTGGVPLVA 168 (355)
T ss_pred cccCCCCCCCHhhcCCCCCCC-EEEEeCCcccccEEcc--------eecccCCCeEEE
Confidence 11 11 112 2344 4455555556665533 344558888887
No 139
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=56.93 E-value=3e+02 Score=30.22 Aligned_cols=133 Identities=14% Similarity=0.057 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcc--CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcC-CCCch
Q psy17541 489 DTQARLRLKEVIATY--IHEQVDMAGNAICMFFHNKLA--NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVD-GSPWY 563 (717)
Q Consensus 489 ~ee~Ke~Lie~Idef--I~ErI~~A~e~Ia~~A~e~I~--dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvE-SRP~~ 563 (717)
...+++...+.++.| -.+ ..+.+-+..+++.. ...+++|-|-+.++..++......|. .|++.. .+|.+
T Consensus 35 ~~~~~~~~~~~~~~~~g~~~----~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd--~Vli~~~d~p~~ 108 (346)
T TIGR03576 35 GFKIDEEDLELLETYVGPAI----FEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGR--KVVHYLPEKPAH 108 (346)
T ss_pred ChhHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCC--EEEECCCCCCCc
Confidence 456777777777777 211 22333333444443 24566666666666655554443343 555542 35655
Q ss_pred hHHHHHHHHHhCCCcEEEEcch-HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 564 EGKEMLRRLVKHQVDCSYVLLS-AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 564 EGr~lA~~L~~~GI~vTyI~DS-AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
....-.-+ -.|.++....|- .+.. .++..+|++ ..-..+|.++.+.=-..++-+|+.+++.|+|
T Consensus 109 ~s~~~~~~--l~ga~~~~~~~l~~l~~-~~~~~lIii--tg~s~~G~v~~~~~L~~i~~la~~~~~~liv 173 (346)
T TIGR03576 109 PSIPRSCK--LAGAEYFESDELSELKK-IDGTSLVVI--TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLV 173 (346)
T ss_pred hhHHHHHH--HcCCEEeccCCHHHHhh-CcCceEEEE--ECCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 43322222 346655333221 1111 123344554 1112345555544444566678889987775
No 140
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=56.92 E-value=71 Score=34.81 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=70.3
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEec
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLS 606 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVla 606 (717)
|..+..--...|..+|.++.+.|.+.=||+.+.-+..+.+.+.....+.||. ++=-|.++.+-+.......-......
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gir--vlGPNc~Gi~~~~~~~~~~~~~~~~~ 144 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTR--LIGPNCPGIITPGECKIGIMPGHIHK 144 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE--EECCCCCcccccccceeeecCCCCCC
Confidence 6666666677789999999999999889999988766567777888787763 44455555554443322221222233
Q ss_pred CC--CeecccchHHHHHH--HHhCCCcEE
Q psy17541 607 NG--AVMSRAGTAQVSLV--ARAFNVPVL 631 (717)
Q Consensus 607 NG--~VvNKiGT~~VALa--AK~~~VPVy 631 (717)
-| ++++..|+...+++ +...++-|-
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s 173 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQS 173 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 45 57899999888876 666777653
No 141
>PRK06234 methionine gamma-lyase; Provisional
Probab=56.90 E-value=1e+02 Score=34.44 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=52.5
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcchH---HHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLSA---VSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DSA---VsyiM~-~VdkVLLG 600 (717)
+.|+|-|-+..+..+|......|. +|++.+ |.+.+. .+...+...|+++.++.... +-..+. +...|++-
T Consensus 81 ~~l~~~sG~~Ai~~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~ie 156 (400)
T PRK06234 81 AAVVAASGMGAISSSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLE 156 (400)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEE
Confidence 456665555666555555554554 455544 655542 23445677899999986432 333332 33344432
Q ss_pred eeeEecCCCeecccchHHHHHHHHhC--CCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAF--NVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~--~VPVyV 632 (717)
.---..|.+.. --.|+-+|+.+ +++|+|
T Consensus 157 -sP~NPtG~v~d---l~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 157 -TPANPTLKVTD---IKAISNIAHENNKECLVFV 186 (400)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHhcCCCCEEEE
Confidence 11112344333 34677788887 776655
No 142
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=56.82 E-value=1.6e+02 Score=26.90 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=52.4
Q ss_pred cCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHH-------HH---h--
Q psy17541 524 ANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVS-------YI---M-- 591 (717)
Q Consensus 524 ~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVs-------yi---M-- 591 (717)
....+++|.|.+..+..++..+... ...|++.+ |.+-|... ..+...|.++.++....-. .+ +
T Consensus 16 ~~~~~~~~~~~t~a~~~~~~~~~~~--~~~v~~~~--~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 90 (170)
T cd01494 16 GNDKAVFVPSGTGANEAALLALLGP--GDEVIVDA--NGHGSRYW-VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAK 90 (170)
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCCC--CCEEEEee--cccceehh-hHHHhcCCEEEEeccCCCCccchhhhhhhhcccc
Confidence 4446777777777766666655432 34566655 33333221 3445668887776532111 11 1
Q ss_pred hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+...|++.. ...+++.+... -.++-+|+.+++++++
T Consensus 91 ~~~~~v~~~~--~~~~~g~~~~~--~~l~~~~~~~~~~li~ 127 (170)
T cd01494 91 PNVALIVITP--NTTSGGVLVPL--KEIRKIAKEYGILLLV 127 (170)
T ss_pred CceEEEEEec--CcCCCCeEcCH--HHHHHHHHHcCCEEEE
Confidence 1233333332 22233333322 5688888999998886
No 143
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=56.32 E-value=2e+02 Score=32.00 Aligned_cols=108 Identities=25% Similarity=0.385 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhh----ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc--
Q psy17541 511 AGNAICMFFHNK----LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-- 584 (717)
Q Consensus 511 A~e~Ia~~A~e~----I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-- 584 (717)
-++.|+++.... +...++|+|.|.+..+..++......|. .|+|.+ |.+.+...+ +...|+.+..+..
T Consensus 79 lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd--~v~v~~--P~y~~~~~~--~~~~g~~~~~~~~~~ 152 (409)
T PLN00143 79 ARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEA--NILLPR--PGFPDVETY--AIFHHLEIRHFDLLP 152 (409)
T ss_pred HHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCC--EEEEcC--CCCcCHHHH--HHHcCCEEEEEeccC
Confidence 455666655432 4455788888888776555554444443 344433 666654332 3346777766642
Q ss_pred --------hHHHHHhh-hccEEEEceeeEecCCCeecccchH-------HHHHHHHhCCCcEEe
Q psy17541 585 --------SAVSYIMR-EVSKVIIGAHALLSNGAVMSRAGTA-------QVSLVARAFNVPVLA 632 (717)
Q Consensus 585 --------SAVsyiM~-~VdkVLLGAdaVlaNG~VvNKiGT~-------~VALaAK~~~VPVyV 632 (717)
.++-..+. +..+|+ +.|- -|.+|+. .++-+|+.|++.+++
T Consensus 153 ~~~~~~d~~~l~~~~~~~~~~~~------~~nP--~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 153 EKGWEVDLDAVEAIADENTIAMV------IINP--GNPCGSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCCCcCCHHHHHHhcccCCEEEE------EECC--CCCCCCccCHHHHHHHHHHHHHcCCeEEE
Confidence 12222222 233332 2222 3666664 466678888987664
No 144
>PLN02187 rooty/superroot1
Probab=56.31 E-value=1.3e+02 Score=34.42 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=55.6
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL----------SAVSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D----------SAVsyiM~ 592 (717)
+...++++|.|.+..+..++......|. .|+|.+ |.+.+... .+...|+.+..+.. ..+-..+.
T Consensus 129 ~~~~~I~it~G~~~al~~~~~~l~~pGd--~Vlv~~--P~y~~y~~--~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPNA--NILLPR--PGFPHYDA--RAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCCHHHHHHHHHHHhcCCCC--EEEEeC--CCCccHHH--HHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 5566789999988887666665544443 455433 66666432 23456887776642 11222222
Q ss_pred -hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+..+|++.-=. -..|.++++-=-..|+-+|+.|++.|++
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 22233332110 1234444444345677778888877764
No 145
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=56.29 E-value=1.4e+02 Score=29.24 Aligned_cols=36 Identities=6% Similarity=-0.035 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEce
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
..+++.+.+.|+++..|+++.-+.+.+.+|.+|.-.
T Consensus 89 i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 89 VTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 577888999999999999999999999999988643
No 146
>PLN02206 UDP-glucuronate decarboxylase
Probab=56.15 E-value=49 Score=37.64 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=61.6
Q ss_pred CCCeEEEecCchHHHHHHHHH-HHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceee
Q psy17541 525 NDDVILTYGCSSLVEKILLTA-HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A-~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAda 603 (717)
.+..||+.|-+.-|-.-|... .++| .+|++++.............+. ...+.++.-.-+..++.++|.||--|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G--~~V~~ld~~~~~~~~~~~~~~~--~~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG--DSVIVVDNFFTGRKENVMHHFS--NPNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc--CEEEEEeCCCccchhhhhhhcc--CCceEEEECCccChhhcCCCEEEEeeee
Confidence 457899999887776655543 3444 5677766432111111111121 2345554322233344578888776642
Q ss_pred EecCCC--------eecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 604 LLSNGA--------VMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 604 VlaNG~--------VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
...... -.|-.||..+.-+|+..+++|+++.-.+
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 211111 1677899999999999999887766554
No 147
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=56.09 E-value=1.1e+02 Score=34.97 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=52.6
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-H-HHHHHHHhCCCcEEEEcc-h---HHHHHhhhccEEEEce
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-K-EMLRRLVKHQVDCSYVLL-S---AVSYIMREVSKVIIGA 601 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r-~lA~~L~~~GI~vTyI~D-S---AVsyiM~~VdkVLLGA 601 (717)
.|++-+-+..+..+|......|. +|++..+ .+.| . .+...|...|+.++++.| . ++-..+..-+++|+ .
T Consensus 87 av~~sSG~aAi~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~-i 161 (436)
T PRK07812 87 ALLLASGQAAETFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFF-A 161 (436)
T ss_pred EEEEccHHHHHHHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEE-E
Confidence 45555445555556655554554 5666554 3444 2 233446678999888852 2 22333332233433 2
Q ss_pred eeEe-cCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 602 HALL-SNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 602 daVl-aNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+.+. ..|.+.. + -.|+-+|+.+|++|+|=+
T Consensus 162 e~~sNp~G~v~D-l--~~I~~la~~~gi~liVD~ 192 (436)
T PRK07812 162 ETISNPQIDVLD-I--PGVAEVAHEAGVPLIVDN 192 (436)
T ss_pred ECCCCCCCeecC-H--HHHHHHHHHcCCEEEEEC
Confidence 2222 2233322 2 458889999999888733
No 148
>PLN02828 formyltetrahydrofolate deformylase
Probab=56.00 E-value=82 Score=34.11 Aligned_cols=72 Identities=11% Similarity=0.196 Sum_probs=42.9
Q ss_pred eEEEecCchHHHHHHHHHHHcCC-eeEEEEcCCCC-chhHHHHHHHHHhCCCcEEEEcc-------hHHHHHhhhccEEE
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGT-KFRVIIVDGSP-WYEGKEMLRRLVKHQVDCSYVLL-------SAVSYIMREVSKVI 598 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk-~FrVIVvESRP-~~EGr~lA~~L~~~GI~vTyI~D-------SAVsyiM~~VdkVL 598 (717)
.||.-|.++....+|. +++.|. ..+|.++=|.+ ...+..+.....+.|||+.+++. ..+...+.++|.|+
T Consensus 74 avlvSg~g~nl~~ll~-~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliV 152 (268)
T PLN02828 74 AVLASKQDHCLIDLLH-RWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLV 152 (268)
T ss_pred EEEEcCCChhHHHHHH-hhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 5777788888666555 455553 35554443333 22233444555678999998764 23444556788877
Q ss_pred Ec
Q psy17541 599 IG 600 (717)
Q Consensus 599 LG 600 (717)
|-
T Consensus 153 LA 154 (268)
T PLN02828 153 LA 154 (268)
T ss_pred Ee
Confidence 65
No 149
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=55.81 E-value=3.2e+02 Score=31.05 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=57.8
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---HHHHHhhhccEEEEce
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---AVSYIMREVSKVIIGA 601 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---AVsyiM~~VdkVLLGA 601 (717)
.|..++++|.+..+..+.....+.|....++++++.+..--..+...+...+.++.++.+. .+..++.+. ++
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~-----~~ 373 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKEL-----KI 373 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhc-----CC
Confidence 5778899988877666666666678777566666654432233334455566676666553 334444332 23
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
|-|+.| ..-..+|+..+||++.++
T Consensus 374 dliiG~---------s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 374 DVLIGN---------SYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred CEEEEC---------chhHHHHHHcCCCEEEec
Confidence 333332 234578899999998664
No 150
>CHL00194 ycf39 Ycf39; Provisional
Probab=55.55 E-value=82 Score=33.44 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=60.9
Q ss_pred eEEEecCchHHHHHHH-HHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc--c-hHHHHHhhhccEEEEceee
Q psy17541 528 VILTYGCSSLVEKILL-TAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL--L-SAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 528 vILTyg~SStV~~vL~-~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~--D-SAVsyiM~~VdkVLLGAda 603 (717)
.||+.|-+..|-..|. .+.++|- +|+++.-++. -+..|...|+.+...- | ..+..++..+|.||--+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~-----~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLR-----KASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChH-----HhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 5888888777655444 4455564 5554432221 1234445577655422 2 4567778889988865433
Q ss_pred EecCCC---eecccchHHHHHHHHhCCCcEEecccC
Q psy17541 604 LLSNGA---VMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 604 VlaNG~---VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
...+.. -+|..|+..+.-+|++.+|.-+|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 222211 236678899999999999876665444
No 151
>PRK09028 cystathionine beta-lyase; Provisional
Probab=55.54 E-value=1.2e+02 Score=34.20 Aligned_cols=94 Identities=16% Similarity=0.275 Sum_probs=56.0
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHH-HHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEML-RRLVKHQVDCSYVLL---SAVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA-~~L~~~GI~vTyI~D---SAVsyiM~-~VdkVLLG 600 (717)
++++|-|-+..+..++....+.|. +|++.+ |.+.| ..++ ..|...|+++.++.. ..+...+. +...|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD--~Vvv~~--~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGD--HLLMVD--SCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEEC--CCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 566666666666666665555564 566654 45555 3344 356778999988742 34554544 34444432
Q ss_pred eeeEecCCCeecccch----HHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGT----AQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT----~~VALaAK~~~VPVyV 632 (717)
.+-|..|. ..|+-+||++|++++|
T Consensus 154 --------spsNPtg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 154 --------SPGSITMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 23344443 4577788999987775
No 152
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=55.48 E-value=60 Score=30.52 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=60.5
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCC--------------CchhHH----HHHHHHHhC--CCcEEEEcch--
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGS--------------PWYEGK----EMLRRLVKH--QVDCSYVLLS-- 585 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESR--------------P~~EGr----~lA~~L~~~--GI~vTyI~DS-- 585 (717)
.||..|.+.+=..++......|.. ++.++|.. +..-|+ .+++.|.+. +++++.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG-KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC-EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 377888877656666666666753 34444422 111242 345555554 4666555432
Q ss_pred --HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 586 --AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 586 --AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
....++.+.|.||.+.|.. --...+.-.|+.+++||+.+.-.
T Consensus 80 ~~~~~~~~~~~diVi~~~d~~---------~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAIDNI---------AVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred hhhHHHHhcCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEcCC
Confidence 2235567899988887652 23567888899999999987653
No 153
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=55.13 E-value=1.3e+02 Score=33.06 Aligned_cols=100 Identities=17% Similarity=0.286 Sum_probs=55.6
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH---------HHHHhh----
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA---------VSYIMR---- 592 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA---------VsyiM~---- 592 (717)
.++|+|-|.+..+..++......|. .|++. .|.+.|... .+...|+.+.++.... +...+.
T Consensus 92 ~~i~it~G~~~al~~~~~~~~~~gd--~vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 165 (391)
T PRK07309 92 NEILVTIGATEALSASLTAILEPGD--KVLLP--APAYPGYEP--IVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGD 165 (391)
T ss_pred CcEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHH--HHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCC
Confidence 4688888888876666665544343 45543 377777533 3334788887775321 111221
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..|+|- .---..|.+++..--..++-+|+.|+++|++
T Consensus 166 ~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 166 KLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred CeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 23344431 0001225454444445677788999988886
No 154
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=55.11 E-value=56 Score=33.66 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=69.7
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCC---------CCc-----hhH----HHHHHHHHhCC
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDG---------SPW-----YEG----KEMLRRLVKHQ 576 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvES---------RP~-----~EG----r~lA~~L~~~G 576 (717)
++..+.++|. +..|+..|.+.+=-.++......|.. +++++|. |-. .-| ..++++|.+..
T Consensus 11 ~g~~~q~~L~-~~~VlivG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 11 IGEEGQEKLK-NARVLVVGAGGLGSPAAEYLAAAGVG-KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred cCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 5555666775 47899999988777777777666753 3333331 111 124 24566777654
Q ss_pred --CcEEEEcc----hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 577 --VDCSYVLL----SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 577 --I~vTyI~D----SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
++++.+.. ..+..++..+|.||...|..- .-..+.-.|+.+++|++.+.
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 55555542 234557788999988877552 23567888999999998763
No 155
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=54.90 E-value=2.3e+02 Score=29.83 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=53.9
Q ss_pred CCeEEEecCchHHHHHHHHHHHc------------CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc--------h
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEK------------GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL--------S 585 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~------------Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D--------S 585 (717)
...|.|.|-+....-+|..+... +....|++.+ +.+-....+ +...|+.+.++.. .
T Consensus 58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~h~~~~~~--~~~~g~~~~~v~~~~~~~~d~~ 133 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD--QAHVSVEKA--AAYLDVKVRLVPVDEDGRMDPE 133 (345)
T ss_pred CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC--cchhHHHHH--HHHHhcCeEEeeeCCCCCcCHH
Confidence 46888888887765555544321 1233444433 333332222 2223777777752 2
Q ss_pred HHHHHhhh------ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 586 AVSYIMRE------VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 586 AVsyiM~~------VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+-..+.+ -.++++....-...|.+.. -..|+-+|+.++++++|
T Consensus 134 ~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~v 183 (345)
T cd06450 134 ALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLHV 183 (345)
T ss_pred HHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEEE
Confidence 23334433 3345554444444565422 35688889999999887
No 156
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=54.19 E-value=79 Score=34.44 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=68.7
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCch--------------hHH----HHHHHHHhCC
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWY--------------EGK----EMLRRLVKHQ 576 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~--------------EGr----~lA~~L~~~G 576 (717)
++..+..+|.+ ..||..|.+.+=..++......|.. +|.++|..+.. -|+ .++.+|.+.+
T Consensus 9 ~G~eaq~kL~~-s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN 86 (286)
T cd01491 9 LGHEAMKKLQK-SNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN 86 (286)
T ss_pred cCHHHHHHHhc-CcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC
Confidence 44455556643 7889999998877777777777865 55666644421 132 3455666654
Q ss_pred --CcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 577 --VDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 577 --I~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
++++.+...-....+.+.|.||+..+.+-. -..+.-+|+.++|||+.+.
T Consensus 87 p~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~---------~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 87 PYVPVTVSTGPLTTDELLKFQVVVLTDASLED---------QLKINEFCHSPGIKFISAD 137 (286)
T ss_pred CCCEEEEEeccCCHHHHhcCCEEEEecCCHHH---------HHHHHHHHHHcCCEEEEEe
Confidence 666666544333566789988877553311 1345568899999998843
No 157
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=53.91 E-value=1.8e+02 Score=32.19 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=31.4
Q ss_pred hHHHHHhhhccEEEEcee----eEecCCCeeccc----chHHHHHHHHhCCCcEEecc
Q psy17541 585 SAVSYIMREVSKVIIGAH----ALLSNGAVMSRA----GTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 585 SAVsyiM~~VdkVLLGAd----aVlaNG~VvNKi----GT~~VALaAK~~~VPVyV~c 634 (717)
.++..+|..--.+|+..+ .+..||.+.+-- +=...+++|.+.+.-.++.+
T Consensus 172 ~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~Liil 229 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVIL 229 (308)
T ss_pred HHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEE
Confidence 556666666566666666 445556554432 24677888999888766653
No 158
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=53.46 E-value=1.2e+02 Score=34.19 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=53.3
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHH-HHHHhCCCcEEEEcch---HHHHHh-hhccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEML-RRLVKHQVDCSYVLLS---AVSYIM-REVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA-~~L~~~GI~vTyI~DS---AVsyiM-~~VdkVLLG 600 (717)
.+|+|.|-+..+..+|......|. +|++. .|.+.| ..+. ..+...|+.++++... .+...+ ++...|++.
T Consensus 70 ~ivvt~gg~~Ai~~~l~all~~Gd--~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~le 145 (388)
T PRK08861 70 GAVVTNCGTSALNLWVSALLGPDD--LIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLE 145 (388)
T ss_pred eEEEECCHHHHHHHHHHHHcCCCC--EEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 456666655665555554444443 45543 577766 3443 3344578998887532 233333 245555554
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.---..|.++.. ..|+-+|++++++|+|
T Consensus 146 -sP~NPtG~v~dl---~~I~~la~~~gi~vIv 173 (388)
T PRK08861 146 -TPSNPLVRVVDI---AELCQKAKAVGALVAV 173 (388)
T ss_pred -CCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 111223444442 3577788999987765
No 159
>PRK06108 aspartate aminotransferase; Provisional
Probab=53.33 E-value=1.4e+02 Score=32.25 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=52.1
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch-----------HHHHHh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS-----------AVSYIM 591 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS-----------AVsyiM 591 (717)
+....+++|.|.+..+..++......|. +|++. +|.+.+.. ..+...|+++.+++.. .+-..+
T Consensus 82 ~~~~~i~~t~g~~~al~~~~~~l~~~gd--~vl~~--~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 155 (382)
T PRK06108 82 TPPERIAVTSSGVQALMLAAQALVGPGD--EVVAV--TPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI 155 (382)
T ss_pred cCcceEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence 4445678888887776555554444443 45553 45555432 2345578888777542 222222
Q ss_pred h-hccEEEEceeeEecCCCeecccch-------HHHHHHHHhCCCcEEe
Q psy17541 592 R-EVSKVIIGAHALLSNGAVMSRAGT-------AQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~-~VdkVLLGAdaVlaNG~VvNKiGT-------~~VALaAK~~~VPVyV 632 (717)
. ++..|++ + ..-|..|+ ..++-+|+++++.+++
T Consensus 156 ~~~~~~i~l-------~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 156 TPRTRALFI-------N-SPNNPTGWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CccceEEEE-------E-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 2 2333333 1 13455664 3466778889987664
No 160
>PRK06348 aspartate aminotransferase; Provisional
Probab=53.23 E-value=1.2e+02 Score=33.20 Aligned_cols=103 Identities=14% Similarity=0.224 Sum_probs=54.8
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc---c-------hHHHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL---L-------SAVSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~---D-------SAVsyiM~ 592 (717)
+...++++|.|.+..+..++......|. +|+|. .|.+.+...+.. ..|..+..+. + ..+-..+.
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQSILDPGD--EVIIH--EPYFTPYKDQIE--MVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHHHH--HcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4556788999988876666665544444 55553 477776543333 3466665553 1 12222232
Q ss_pred -hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..|+|- .-=-..|.+++.-==..++-+|+.+++.+++
T Consensus 161 ~~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 161 SKTKAIILN-SPNNPTGAVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred cCccEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 34444442 1111224444333235566778888876653
No 161
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=53.14 E-value=73 Score=34.67 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=69.5
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEec
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLS 606 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVla 606 (717)
|..+..-....|..+|.++.+.|.+.=|++.+.-+....+.+.+...++|+ .++=-|.++.+-+...+...-+..+..
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi--rilGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT--RLIGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCceEEcccccceeeccccCCC
Confidence 777777778888999999999999988888888766655677777777776 334445555544433222222222333
Q ss_pred CC--CeecccchHHHHHH--HHhCCCcEE
Q psy17541 607 NG--AVMSRAGTAQVSLV--ARAFNVPVL 631 (717)
Q Consensus 607 NG--~VvNKiGT~~VALa--AK~~~VPVy 631 (717)
.| ++++..|+...+++ +...++-|.
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S 171 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQS 171 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 46 47999998887776 666777664
No 162
>PLN02778 3,5-epimerase/4-reductase
Probab=53.10 E-value=59 Score=34.54 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=22.0
Q ss_pred ecccchHHHHHHHHhCCCcEEecccC
Q psy17541 611 MSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 611 vNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
.|-.||..++-+|+.+++++++..-+
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~~v~~sS~ 111 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLVLTNYATG 111 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 67889999999999999998776543
No 163
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=52.76 E-value=2.2e+02 Score=29.93 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=68.4
Q ss_pred HHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCC-eeEEE---EcCC----CC-----chhHH----HHHHHHHhCC
Q psy17541 514 AICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGT-KFRVI---IVDG----SP-----WYEGK----EMLRRLVKHQ 576 (717)
Q Consensus 514 ~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk-~FrVI---VvES----RP-----~~EGr----~lA~~L~~~G 576 (717)
.++..+.++|.+ ..||..|.+.+=-.++......|. +|.++ ++|- |- ..-|+ .++++|.+..
T Consensus 21 ~~g~~~Q~~L~~-~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln 99 (245)
T PRK05690 21 GFDFDGQEKLKA-ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN 99 (245)
T ss_pred hcCHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC
Confidence 466667777865 788889988776666666666674 45554 2221 11 11132 3456666543
Q ss_pred --CcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 577 --VDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 577 --I~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
+.+..+. ...+..+++++|.||...|..- --+.+.-+|+.+++|++..
T Consensus 100 p~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~---------~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 100 PHIAIETINARLDDDELAALIAGHDLVLDCTDNVA---------TRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHH---------HHHHHHHHHHHhCCEEEEe
Confidence 5555443 2234556788999998887442 2356778899999999874
No 164
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=52.69 E-value=60 Score=33.38 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=51.5
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH-----HHHHhhhccEEEEceeeEecCCCeecccch-HHHHHHHHhC
Q psy17541 553 RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA-----VSYIMREVSKVIIGAHALLSNGAVMSRAGT-AQVSLVARAF 626 (717)
Q Consensus 553 rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA-----VsyiM~~VdkVLLGAdaVlaNG~VvNKiGT-~~VALaAK~~ 626 (717)
+|+|+|..+.+.+. +...|.+.|+.+.++.... ...++...|.|||+--- |+ ..+.+. ..+..-+...
T Consensus 2 ~ilv~d~~~~~~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp----~~-~~~~~~~~~~i~~~~~~ 75 (214)
T PRK07765 2 RILVVDNYDSFVFN-LVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGP----GT-PERAGASIDMVRACAAA 75 (214)
T ss_pred eEEEEECCCcHHHH-HHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCC----CC-hhhcchHHHHHHHHHhC
Confidence 68899998877775 7788999999999987543 22224567887774211 22 122332 2334444557
Q ss_pred CCcEEecccCCccc
Q psy17541 627 NVPVLAACETHKFC 640 (717)
Q Consensus 627 ~VPVyV~cEtyKFs 640 (717)
++||+=+|=-+-+-
T Consensus 76 ~~PiLGIC~G~Qll 89 (214)
T PRK07765 76 GTPLLGVCLGHQAI 89 (214)
T ss_pred CCCEEEEccCHHHH
Confidence 89999877555443
No 165
>PRK13938 phosphoheptose isomerase; Provisional
Probab=52.42 E-value=2.6e+02 Score=28.66 Aligned_cols=34 Identities=6% Similarity=-0.137 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVII 599 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLL 599 (717)
...++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 130 i~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 130 LRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 4677778888999888888777777777777764
No 166
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=52.27 E-value=1.1e+02 Score=31.01 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=68.2
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCC--------------chhH----HHHHHHHHhC-
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSP--------------WYEG----KEMLRRLVKH- 575 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP--------------~~EG----r~lA~~L~~~- 575 (717)
++..+.++|. +..||..|.+.+=..++..+...|.. ++.++|... ..-| ..++++|.+.
T Consensus 11 ~g~~~q~kl~-~~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 11 IGEEGQQRLL-NSHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred cCHHHHHHhc-CCCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 4555666774 47899999998767777777666742 444444321 1112 2345666654
Q ss_pred -CCcEEEEcc----hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 576 -QVDCSYVLL----SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 576 -GI~vTyI~D----SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
.++++.+.. ..+..++.++|.||...|.+- --..+.-.|+.+++|++.+.
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 355554432 234556788999888766532 12457788999999998755
No 167
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.11 E-value=89 Score=34.89 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhh-ccEEEEceee
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMRE-VSKVIIGAHA 603 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~-VdkVLLGAda 603 (717)
.|.+|+..|.+..=..+.+.+++.| .+|++.|.++... ...+..|.+.|+.+..-.+.. .+..+ .|.|+.++-
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~~~~-~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~g- 77 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFSE-NPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNPG- 77 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCCccc-hhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECCC-
Confidence 3668888888874344444444455 5788888765332 234567888898775433222 22333 676666552
Q ss_pred EecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 604 LLSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 604 VlaNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
|-. +.++...|++.|+||+
T Consensus 78 i~~---------~~~~~~~a~~~~i~v~ 96 (447)
T PRK02472 78 IPY---------TNPMVEKALEKGIPII 96 (447)
T ss_pred CCC---------CCHHHHHHHHCCCcEE
Confidence 222 2345566666666665
No 168
>PRK06225 aspartate aminotransferase; Provisional
Probab=52.06 E-value=1.2e+02 Score=32.98 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=53.8
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-h----------HHHHHh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-S----------AVSYIM 591 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-S----------AVsyiM 591 (717)
+....+++|.|.+..+..++......|. +|++.+ |.+... ...+...|..+.++.. . .+...+
T Consensus 81 ~~~~~v~~~~g~t~al~~~~~~~~~~gd--~vl~~~--p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 154 (380)
T PRK06225 81 LDDDEALITAGATESLYLVMRAFLSPGD--NAVTPD--PGYLII--DNFASRFGAEVIEVPIYSEECNYKLTPELVKENM 154 (380)
T ss_pred CCCCcEEEeCCHHHHHHHHHHHhcCCCC--EEEEcC--CCCcch--HHHHHHhCceEEeeccccccCCccCCHHHHHhhc
Confidence 3455789999988876666665544443 455544 555432 2334557888777752 1 111112
Q ss_pred h-hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 R-EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~-~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
. ++..|++- +--...|.++++-=-..++-+|+++|+++++
T Consensus 155 ~~~~~~v~l~-~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~ 195 (380)
T PRK06225 155 DENTRLIYLI-DPLNPLGSSYTEEEIKEFAEIARDNDAFLLH 195 (380)
T ss_pred CCCceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCcEEEE
Confidence 2 22222221 1111223333322233466778999998886
No 169
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=51.95 E-value=1.1e+02 Score=26.74 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=43.7
Q ss_pred CeeEEEEcCCCCchhHHHHHHHHHhCCCcEE-EEcc------hHHHHHh-hhccEEEEceeeEecCCCeecccchHHHHH
Q psy17541 550 TKFRVIIVDGSPWYEGKEMLRRLVKHQVDCS-YVLL------SAVSYIM-REVSKVIIGAHALLSNGAVMSRAGTAQVSL 621 (717)
Q Consensus 550 k~FrVIVvESRP~~EGr~lA~~L~~~GI~vT-yI~D------SAVsyiM-~~VdkVLLGAdaVlaNG~VvNKiGT~~VAL 621 (717)
..|+++.+++ +++.|.+.||+|. .+.- +.+..+. .++|+||.=.+. .|....+ -.+.+=-
T Consensus 12 lG~~i~AT~g--------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~~~~-d~~~iRr 79 (90)
T smart00851 12 LGFELVATGG--------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQPHE-DGKALRR 79 (90)
T ss_pred CCCEEEEccH--------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Ccceecc-CcHHHHH
Confidence 3588888765 6788999999985 4321 1222332 269999873321 1332222 3467778
Q ss_pred HHHhCCCcEE
Q psy17541 622 VARAFNVPVL 631 (717)
Q Consensus 622 aAK~~~VPVy 631 (717)
+|-.++||++
T Consensus 80 ~A~~~~Ip~~ 89 (90)
T smart00851 80 AAENIDIPGA 89 (90)
T ss_pred HHHHcCCCee
Confidence 8889999975
No 170
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=51.88 E-value=1.7e+02 Score=32.44 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhccC-CCeEEEecCchHHHHHHHHH----HHcCCeeEEEEcCCCCchhHH-HHHHHH-HhCCCcEEEE
Q psy17541 510 MAGNAICMFFHNKLAN-DDVILTYGCSSLVEKILLTA----HEKGTKFRVIIVDGSPWYEGK-EMLRRL-VKHQVDCSYV 582 (717)
Q Consensus 510 ~A~e~Ia~~A~e~I~d-GdvILTyg~SStV~~vL~~A----~e~Gk~FrVIVvESRP~~EGr-~lA~~L-~~~GI~vTyI 582 (717)
.+++.|+++.. ..+ .++|+|.|.+..+..++... +..| -+|++.+ |.+.+- .....+ ...|+.+.++
T Consensus 80 ~~r~~la~~~~--~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~g--d~vl~~~--~~~~s~~~~~~~~a~~~g~~v~~v 153 (424)
T PLN02855 80 LARKKVAAFIN--ASTSREIVFTRNATEAINLVAYTWGLANLKPG--DEVILSV--AEHHSNIVPWQLVAQKTGAVLKFV 153 (424)
T ss_pred HHHHHHHHHcC--CCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCc--CEEEECC--CccHHHHHHHHHHHHHcCCEEEEE
Confidence 34555554321 122 46888877766655554421 1223 3566654 333332 222223 4578888887
Q ss_pred cch--------HHHHHhh-hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 583 LLS--------AVSYIMR-EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 583 ~DS--------AVsyiM~-~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
... .+...+. +...|++- +.-...|.++.- ..|+-+|+.+|++|+|
T Consensus 154 ~~~~~~~~~~~~l~~~i~~~t~lv~i~-~~~n~tG~~~~~---~~I~~l~~~~g~~viv 208 (424)
T PLN02855 154 GLTPDEVLDVEQLKELLSEKTKLVATH-HVSNVLGSILPV---EDIVHWAHAVGAKVLV 208 (424)
T ss_pred ecCCCCCcCHHHHHHHhccCceEEEEe-CccccccccCCH---HHHHHHHHHcCCEEEE
Confidence 531 1222232 34444433 222334544432 3577788999987776
No 171
>PRK07683 aminotransferase A; Validated
Probab=51.80 E-value=1.3e+02 Score=33.04 Aligned_cols=100 Identities=21% Similarity=0.318 Sum_probs=52.6
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH---------HHHHhhhccEE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA---------VSYIMREVSKV 597 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA---------VsyiM~~VdkV 597 (717)
++++|.|.+..+..++......|. +|++ ..|.+.+...+ +...|+++.++.... +...+..-+++
T Consensus 91 ~I~~t~G~~~al~~~~~~l~~~gd--~Vl~--~~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTILEPGT--EVIL--PAPIYPGYEPI--IRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRC 164 (387)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCC--EEEE--cCCCccchHHH--HHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceE
Confidence 789999988876666555444453 3444 35666664333 234688888886432 22222221222
Q ss_pred EEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 598 IIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 598 LLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++=..---..|.+++..=-..++-+|+.+++++++
T Consensus 165 i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 165 VVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 21011111223333332235577888889987664
No 172
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=51.77 E-value=60 Score=38.46 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=57.9
Q ss_pred eeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc----c-hHHHHHhh--hccEEEEceeeEec-CC----------Ceec
Q psy17541 551 KFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL----L-SAVSYIMR--EVSKVIIGAHALLS-NG----------AVMS 612 (717)
Q Consensus 551 ~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~----D-SAVsyiM~--~VdkVLLGAdaVla-NG----------~VvN 612 (717)
..+|+|+-+. ++=|+.+++.|.+.|+++++.. | .++..++. +.|.||=-|--... +. .-+|
T Consensus 380 ~mkiLVtGa~-G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N 458 (668)
T PLN02260 380 SLKFLIYGRT-GWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRAN 458 (668)
T ss_pred CceEEEECCC-chHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHH
Confidence 3466666543 5668888888888888875432 2 23444554 57888766632210 11 1378
Q ss_pred ccchHHHHHHHHhCCCcEEecccCCcc
Q psy17541 613 RAGTAQVSLVARAFNVPVLAACETHKF 639 (717)
Q Consensus 613 KiGT~~VALaAK~~~VPVyV~cEtyKF 639 (717)
..||..++-+|+.++++++++.-.+=|
T Consensus 459 ~~gt~~l~~a~~~~g~~~v~~Ss~~v~ 485 (668)
T PLN02260 459 VVGTLTLADVCRENGLLMMNFATGCIF 485 (668)
T ss_pred hHHHHHHHHHHHHcCCeEEEEccccee
Confidence 899999999999999998887554444
No 173
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=51.58 E-value=1.8e+02 Score=25.97 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=57.0
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEE-EcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeE
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVI-IVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHAL 604 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVI-VvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaV 604 (717)
.|...|.++.-...+..+......++|. |+|..|.. ........|++ .+.| +--++. ++|.|++..-.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~----~~~~~~~~~~~--~~~~--~~~ll~~~~~D~V~I~tp~- 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPER----AEAFAEKYGIP--VYTD--LEELLADEDVDAVIIATPP- 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHH----HHHHHHHTTSE--EESS--HHHHHHHTTESEEEEESSG-
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHH----HHHHHHHhccc--chhH--HHHHHHhhcCCEEEEecCC-
Confidence 4778888887667777776666777766 77766532 11224567888 4444 333443 79999886533
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
---+.+++.|-.+|++|++
T Consensus 73 ---------~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 73 ---------SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp ---------GGHHHHHHHHHHTTSEEEE
T ss_pred ---------cchHHHHHHHHHcCCEEEE
Confidence 1246788888889997776
No 174
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=51.48 E-value=74 Score=33.20 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHcCCeeEEEEcCCCCchhH---HHHHHHHHhCCCcEE-EEcchHHHHHhhhccEEEEceeeEecCCCee
Q psy17541 536 SLVEKILLTAHEKGTKFRVIIVDGSPWYEG---KEMLRRLVKHQVDCS-YVLLSAVSYIMREVSKVIIGAHALLSNGAVM 611 (717)
Q Consensus 536 StV~~vL~~A~e~Gk~FrVIVvESRP~~EG---r~lA~~L~~~GI~vT-yI~DSAVsyiM~~VdkVLLGAdaVlaNG~Vv 611 (717)
.....+|..+.+......|+|=+ .|...+ ..+...+.. ...+. +..+..+..+|..+|.|+.- |
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~Vvti------n---- 207 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDAVVTI------N---- 207 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCEEEEE------C----
Confidence 45677788777665566665544 674333 233344433 33444 45577889999999999642 3
Q ss_pred cccchHHHHHHHHhCCCcEEecccCC
Q psy17541 612 SRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 612 NKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
+.+++-|-.+|+||+++..++
T Consensus 208 -----StvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 208 -----STVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred -----CHHHHHHHHcCCceEEecCcc
Confidence 357888999999999998765
No 175
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=51.47 E-value=3.7e+02 Score=29.63 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-hHH
Q psy17541 509 DMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-SAV 587 (717)
Q Consensus 509 ~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-SAV 587 (717)
..+.+.+.+ ....+. |..|+.++.+.....+..-+.+-|....++++...+..+=..+-+.|.+....+..-.| ..+
T Consensus 256 ~~~~~~l~~-~~~~l~-g~~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~~~~~~~~~ 333 (398)
T PF00148_consen 256 ERAEDALAD-YRERLG-GKRVAIYGDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEESDPEVIIDPDPEEI 333 (398)
T ss_dssp HHHHHHHHH-HHHHHT-T-EEEEESSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTTCSEEEESCBHHHH
T ss_pred HHHHHHHHh-hHHhhc-CceEEEEcCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCCCcEEEeCCCHHHH
Confidence 334444444 334444 78888898887767666666667877766666655433222333444433222222222 245
Q ss_pred HHHhhh--ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 588 SYIMRE--VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 588 syiM~~--VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
..++.+ .|.+| |+..-..+|+..++|++.++-
T Consensus 334 ~~~l~~~~pdl~i----------------g~~~~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 334 EELLEELKPDLLI----------------GSSHERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp HHHHHHHT-SEEE----------------ESHHHHHHHHHTT--EEE-SS
T ss_pred HHHHHhcCCCEEE----------------echhhHHHHHHhCCCeEEEeC
Confidence 555554 66553 334456778888888887654
No 176
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=51.33 E-value=35 Score=34.37 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=49.8
Q ss_pred eeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCee----cccchHHHHHHHHhC
Q psy17541 551 KFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVM----SRAGTAQVSLVARAF 626 (717)
Q Consensus 551 ~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~Vv----NKiGT~~VALaAK~~ 626 (717)
++-|.|+..-+......+.+.|...|+++.++...... -+.++|.|+|+-- .+.++ ...+-...-.-+...
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~-~l~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~~~ 76 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPG-DLPDCDALIIPGG----ESTTIGRLMKREGILDEIKEKIEE 76 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChH-HhccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHHHC
Confidence 45677777766665667788899999988777755432 3456777766642 11111 112222222223347
Q ss_pred CCcEEecccCCcc
Q psy17541 627 NVPVLAACETHKF 639 (717)
Q Consensus 627 ~VPVyV~cEtyKF 639 (717)
++||+-+|--+-+
T Consensus 77 ~~pilGIC~G~Ql 89 (200)
T PRK13527 77 GLPILGTCAGLIL 89 (200)
T ss_pred CCeEEEECHHHHH
Confidence 8999987755543
No 177
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.96 E-value=88 Score=35.11 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=53.4
Q ss_pred EEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH---HHHHhhhccEEEEceeeEe
Q psy17541 529 ILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA---VSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA---VsyiM~~VdkVLLGAdaVl 605 (717)
|+.+|....=..+.+.+++.| ..|.+.|.++...=..+...|.+.||.+..-.+.. +.....+.|.|+++.. |-
T Consensus 3 v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~g-i~ 79 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPG-IP 79 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCC-CC
Confidence 566665543233444455556 58999998876543445566888898886543332 2235567888887543 22
Q ss_pred cCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 606 SNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 606 aNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
. ..++-..|++.++||+
T Consensus 80 ~---------~~~~~~~a~~~~i~v~ 96 (459)
T PRK02705 80 W---------DHPTLVELRERGIEVI 96 (459)
T ss_pred C---------CCHHHHHHHHcCCcEE
Confidence 2 2345555566666655
No 178
>PRK15005 universal stress protein F; Provisional
Probab=50.71 E-value=43 Score=30.76 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=24.0
Q ss_pred hccEEEEceeeEecCCCeec-ccchHHHHHHHHhCCCcEEec
Q psy17541 593 EVSKVIIGAHALLSNGAVMS-RAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvN-KiGT~~VALaAK~~~VPVyV~ 633 (717)
++|+|++|++. +| +.. -+|+- ..-+.++..+||+|+
T Consensus 107 ~~DLIV~Gs~~---~~-~~~~llGS~-a~~vl~~a~cpVlvV 143 (144)
T PRK15005 107 PADMIIIASHR---PD-ITTYLLGSN-AAAVVRHAECSVLVV 143 (144)
T ss_pred CCCEEEEeCCC---CC-chheeecch-HHHHHHhCCCCEEEe
Confidence 68999999873 23 332 24663 445567778999986
No 179
>PRK08175 aminotransferase; Validated
Probab=50.49 E-value=43 Score=36.71 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=54.4
Q ss_pred ccCC-CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch-H------HHHHhh--
Q psy17541 523 LAND-DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS-A------VSYIMR-- 592 (717)
Q Consensus 523 I~dG-dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS-A------VsyiM~-- 592 (717)
+... .+|+|.|.+..+..++....+.|. +|+|. +|.+.+...... ..|+++.++... . +-..+.
T Consensus 88 ~~~~~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 161 (395)
T PRK08175 88 IDPESEAIVTIGSKEGLAHLMLATLDHGD--TVLVP--NPSYPIHIYGAV--IAGAQVRSVPLVEGVDFFNELERAIRES 161 (395)
T ss_pred CCCCCcEEEccCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHHH--HcCCeEEEEecccCCCcHHHHHHHHhhc
Confidence 3344 588898887776555554444453 34443 677666433332 468888777532 1 222222
Q ss_pred --hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 --EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 --~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..|++. .-=-..|.+++.-=-..++-+|+++++.+++
T Consensus 162 ~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 162 YPKPKMMILG-FPSNPTAQCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred cCCceEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 23344332 0001224443333335777889999997765
No 180
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=49.86 E-value=1.6e+02 Score=31.22 Aligned_cols=91 Identities=20% Similarity=0.330 Sum_probs=50.9
Q ss_pred CeEEEecCch---HHHHHHHHHHHcCC--eeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-hHHHHHhhhccEEEEc
Q psy17541 527 DVILTYGCSS---LVEKILLTAHEKGT--KFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-SAVSYIMREVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SS---tV~~vL~~A~e~Gk--~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-SAVsyiM~~VdkVLLG 600 (717)
.+++|+|-|. ....+|....+... .+.|++-.+.|..+- + +.+.+..-++.+... .-+..+|..+|.||..
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~--l-~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNLDE--L-KKFAKEYPNIILFIDVENMAELMNEADLAIGA 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCHHH--H-HHHHHhCCCEEEEeCHHHHHHHHHHCCEEEEC
Confidence 4678887553 23444544433333 455555455565432 2 222222224555444 4689999999999763
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
.| ....=+-..|+|++++.-
T Consensus 249 -------------~G--~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 249 -------------AG--STSWERCCLGLPSLAICL 268 (279)
T ss_pred -------------Cc--hHHHHHHHcCCCEEEEEe
Confidence 23 124445567999998754
No 181
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=49.80 E-value=55 Score=34.69 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=51.4
Q ss_pred EEEecCchHHHHHHHHHHH-cCCe-eE--EEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 529 ILTYGCSSLVEKILLTAHE-KGTK-FR--VIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A~e-~Gk~-Fr--VIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
-+++-|+......+..+.+ .|.+ ++ ||+.-+-|.+|-+.-.+.|. . +|||+|
T Consensus 126 ~~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr-------------------~-----~Gad~V 181 (245)
T PRK09136 126 DFTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLE-------------------R-----DGCDLV 181 (245)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHH-------------------H-----cCCCEE
Confidence 3455677766666666543 3434 33 88888889887654444442 1 477777
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
--. |.+.|.+|++.++||.+++--
T Consensus 182 gMs--------~~pEa~~A~~~gi~~~~i~~V 205 (245)
T PRK09136 182 GMT--------GMPEAALARELGLPYACLALV 205 (245)
T ss_pred cCc--------HHHHHHHHHHcCCCEEEEEEE
Confidence 543 588999999999999987653
No 182
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=49.78 E-value=63 Score=35.81 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=68.7
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHH-hCCCcEEEEcchHHHHHhhhccEEEEcee--
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLV-KHQVDCSYVLLSAVSYIMREVSKVIIGAH-- 602 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~-~~GI~vTyI~DSAVsyiM~~VdkVLLGAd-- 602 (717)
-|..+.+=-...|...+.+|.+.|.+.-|+++|.-|...|..+.+.+. +.|+ .+|=-|..+.+-+.. .++|..
T Consensus 89 ~D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~--rliGPNc~Gii~p~~--~~~gi~p~ 164 (317)
T PTZ00187 89 ADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKT--RLIGPNCPGIIKPGE--CKIGIMPG 164 (317)
T ss_pred CCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCC--EEECCCCceEEcchh--hccccCCc
Confidence 366677767778899999999999999999999999988877764444 2444 566666666655543 223321
Q ss_pred eEecCC--CeecccchHHHHHH--HHhCCCcEE
Q psy17541 603 ALLSNG--AVMSRAGTAQVSLV--ARAFNVPVL 631 (717)
Q Consensus 603 aVlaNG--~VvNKiGT~~VALa--AK~~~VPVy 631 (717)
-++.-| +++++.||+...++ +...++-+-
T Consensus 165 ~~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S 197 (317)
T PTZ00187 165 HIHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQS 197 (317)
T ss_pred CCCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEE
Confidence 123345 68999997766655 455555544
No 183
>PRK05443 polyphosphate kinase; Provisional
Probab=49.71 E-value=45 Score=40.57 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=40.4
Q ss_pred cCchHHHHHHHHHHHcCCeeEEEEcCCCCchh--HHHHHHHHHhCCCcEEEEcc
Q psy17541 533 GCSSLVEKILLTAHEKGTKFRVIIVDGSPWYE--GKEMLRRLVKHQVDCSYVLL 584 (717)
Q Consensus 533 g~SStV~~vL~~A~e~Gk~FrVIVvESRP~~E--Gr~lA~~L~~~GI~vTyI~D 584 (717)
+..+-|...|..|+++|+.++|+|---.+..+ ....++.|.++|+.|.|-..
T Consensus 377 ~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~~ 430 (691)
T PRK05443 377 SKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGVV 430 (691)
T ss_pred cCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEccC
Confidence 55577788999999999999988765554444 25788999999999988544
No 184
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=49.70 E-value=3.4e+02 Score=30.75 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcC-CeeEEEEc-CCCCchhHHHHHHHHHhCCCc
Q psy17541 501 ATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKG-TKFRVIIV-DGSPWYEGKEMLRRLVKHQVD 578 (717)
Q Consensus 501 defI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~G-k~FrVIVv-ESRP~~EGr~lA~~L~~~GI~ 578 (717)
+++|.++...+.+.|.. ....+ .|..+++++.+..+..++..+.+.| ...-+..+ -..|..++....+++.+.|++
T Consensus 270 e~~i~~e~~~~~~~l~~-~~~~l-~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (426)
T cd01972 270 EAVIEREHERVAPEIEE-LRKAL-KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVD 347 (426)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHh-CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcc
Confidence 33444333334444444 23334 5888888887777777777777778 65543333 344445543344556666764
Q ss_pred E--E---EEcch----HHHHHhhh--ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 579 C--S---YVLLS----AVSYIMRE--VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 579 v--T---yI~DS----AVsyiM~~--VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
. . ++.|. .+..++.+ .|.+|.+. +- .. ...|+..|+|++-+
T Consensus 348 ~~~~~~~~~~~~~~~~e~~~~l~~~~pDl~i~~~-------~~------~~-~~~~~~~gip~~~~ 399 (426)
T cd01972 348 PEIDITKYTVSNGQYYQFYNLLKRVKPDFIIFRH-------GG------LF-PDATVYLGIPVVPL 399 (426)
T ss_pred cccccceeeecCCCHHHHHHHHHHhCCCEEEEcC-------CC------cc-HHHHHhcCCCEEec
Confidence 2 2 44555 34555553 56554432 11 11 12347799999876
No 185
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=49.59 E-value=38 Score=30.61 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=54.0
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
.|..||+.|.+.+...-+....+.|-++.||-.+. ...+ ..|. +... .....|..+++||+-.+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~~~----~~i~--~~~~-~~~~~l~~~~lV~~at~d- 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EFSE----GLIQ--LIRR-EFEEDLDGADLVFAATDD- 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HHHH----TSCE--EEES-S-GGGCTTESEEEE-SS--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hhhh----hHHH--HHhh-hHHHHHhhheEEEecCCC-
Confidence 46789999999988888888877787666665554 1111 2222 2322 222346667777654322
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
..-.-.++..|+++++||.++-
T Consensus 71 --------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 71 --------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp --------HHHHHHHHHHHHHTTSEEEETT
T ss_pred --------HHHHHHHHHHHhhCCEEEEECC
Confidence 2333678889999999999964
No 186
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=49.45 E-value=1.1e+02 Score=34.16 Aligned_cols=90 Identities=13% Similarity=0.271 Sum_probs=55.2
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch--------HHHHHhhhc
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS--------AVSYIMREV 594 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS--------AVsyiM~~V 594 (717)
+++|.-|+.+++++++..++..+ +.|.+.||++++|... .+-..+++.
T Consensus 230 l~~G~di~Iia~Gs~~~~aleAa------------------------~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~ 285 (355)
T PTZ00182 230 VREGKDVTIVGYGSQVHVALKAA------------------------EELAKEGISCEVIDLRSLRPWDRETIVKSVKKT 285 (355)
T ss_pred ecCCCCEEEEEeCHHHHHHHHHH------------------------HHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcC
Confidence 56676666677777665555443 2333344444443221 233445566
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhC----CCcEEecccCCcccc
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAF----NVPVLAACETHKFCE 641 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~----~VPVyV~cEtyKFs~ 641 (717)
..|| +++++....-.|+...+.++... .+|+.-+|-...|.+
T Consensus 286 ~~Iv-----vvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p 331 (355)
T PTZ00182 286 GRCV-----IVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFP 331 (355)
T ss_pred CEEE-----EEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCC
Confidence 6665 45677777778998888888875 678887766555543
No 187
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=49.40 E-value=18 Score=40.81 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=38.9
Q ss_pred HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCccc
Q psy17541 586 AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFC 640 (717)
Q Consensus 586 AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs 640 (717)
.+-..++.+|.||.|=-++-.- ++..| ....||-.|+.|+||||++|.+....
T Consensus 276 ~l~~~l~~ADlVITGEG~~D~Q-tl~GK-~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 276 DLEQKIKDADLVITGEGRLDRQ-SLMGK-APVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred CHHHHhcCCCEEEECCCccccc-ccCCc-hHHHHHHHHHHhCCeEEEEecccCCC
Confidence 3455678999999997665321 23333 56778889999999999999987544
No 188
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=49.31 E-value=72 Score=36.99 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHHHHHhCCCcEEEEcchH--------HHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHh----CCCcEEecc
Q psy17541 567 EMLRRLVKHQVDCSYVLLSA--------VSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA----FNVPVLAAC 634 (717)
Q Consensus 567 ~lA~~L~~~GI~vTyI~DSA--------VsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~----~~VPVyV~c 634 (717)
+.++.|.+.||++++|-... +-...++...|| ++.+|.+..-+|+...+.++.+ ...||.-++
T Consensus 357 ~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~ 431 (464)
T PRK11892 357 KAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVT 431 (464)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEec
Confidence 33456666777777765433 333344566663 5678888888999999999887 367888776
Q ss_pred cCCccc
Q psy17541 635 ETHKFC 640 (717)
Q Consensus 635 EtyKFs 640 (717)
-..-|.
T Consensus 432 ~~d~~~ 437 (464)
T PRK11892 432 GKDVPM 437 (464)
T ss_pred cCCccC
Confidence 655444
No 189
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=49.19 E-value=1.3e+02 Score=34.08 Aligned_cols=97 Identities=13% Similarity=0.265 Sum_probs=52.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-H-HHHHHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-K-EMLRRLVKHQVDCSYVLL---SAVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r-~lA~~L~~~GI~vTyI~D---SAVsyiM~-~VdkVLLG 600 (717)
+.|++-+-+..+..+|......|. +|++.+ |.+.| . .+...|...|+++.++.. ..+...+. +...|++
T Consensus 75 ~~l~~ssG~~Ai~~al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~l- 149 (425)
T PRK06084 75 GALAVASGMAAITYAIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFC- 149 (425)
T ss_pred ceeEehhHHHHHHHHHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEE-
Confidence 345444444455555554444454 455543 45554 2 233334456888887752 33444443 4555655
Q ss_pred eeeE-ecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHAL-LSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaV-laNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+.+ -..|.++. -..|+-+|+.++++|+|
T Consensus 150 -esp~NPtG~v~d---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 150 -ESIGNPAGNIID---IQALADAAHRHGVPLIV 178 (425)
T ss_pred -eCCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 222 23454444 26677889999998876
No 190
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=49.10 E-value=1.6e+02 Score=32.35 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=53.9
Q ss_pred CeEEEecCchHHHHHHHHHHHc-CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch----------HH-HHHhhhc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEK-GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS----------AV-SYIMREV 594 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~-Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS----------AV-syiM~~V 594 (717)
.+|+|.|.+..+..++...... |..-.|+|. .|.+.+...+ +...|+++..|+.. ++ ..+.+++
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~--~P~y~~~~~~--~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~ 167 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCP--NPFYQIYEGA--ALLAGAEPYFLNCDPANNFAPDFDAVPAEVWART 167 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEc--CCCccchHHH--HHhcCCEEEEeccCccccCccCHHHHHHHHhhcc
Confidence 5788899888876666655444 223345553 6777765443 33468888777532 12 1112234
Q ss_pred cEEEEceeeEecCCCeecccc-------hHHHHHHHHhCCCcEEe
Q psy17541 595 SKVIIGAHALLSNGAVMSRAG-------TAQVSLVARAFNVPVLA 632 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiG-------T~~VALaAK~~~VPVyV 632 (717)
..+++ + .--|.+| -..++-+|+.|++.|++
T Consensus 168 k~i~l-------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 168 QLLFV-------C-SPGNPTGAVLPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred EEEEE-------c-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEe
Confidence 44443 2 2346666 45567778888886653
No 191
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=48.68 E-value=82 Score=28.64 Aligned_cols=58 Identities=10% Similarity=0.029 Sum_probs=38.4
Q ss_pred HHHHHhCCCcEEEEcch--HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 569 LRRLVKHQVDCSYVLLS--AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 569 A~~L~~~GI~vTyI~DS--AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
-+.+.+.|+++.+...+ .+.....++|.||+|.+.-+.- ..+--.+..+|+||.++-.
T Consensus 24 ~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~---------~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 24 NKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYML---------PDLKKETDKKGIPVEVING 83 (95)
T ss_pred HHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHH---------HHHHHHhhhcCCCEEEeCh
Confidence 34566788887766544 3545678899999997654321 2244456678999998643
No 192
>PRK05957 aspartate aminotransferase; Provisional
Probab=48.66 E-value=1.8e+02 Score=31.97 Aligned_cols=93 Identities=14% Similarity=0.277 Sum_probs=53.0
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch--------HHHHHhh-hccE
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS--------AVSYIMR-EVSK 596 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS--------AVsyiM~-~Vdk 596 (717)
.++++|.|.+..+..++......|. +|++ +.|.+.+...+ +...|+.+.++... .+-..+. +...
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv--~~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~kl 163 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAITDPGD--EIIL--NTPYYFNHEMA--ITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRA 163 (389)
T ss_pred CeEEEeCChHHHHHHHHHHhcCCCC--EEEE--eCCCCcCHHHH--HHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceE
Confidence 3578888877766555554444443 4555 34777665332 34579888887532 1222222 3333
Q ss_pred EEEceeeEecCCCeecccch-------HHHHHHHHhCCCcEEe
Q psy17541 597 VIIGAHALLSNGAVMSRAGT-------AQVSLVARAFNVPVLA 632 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT-------~~VALaAK~~~VPVyV 632 (717)
|++- | .-|..|+ ..++-+|+.+|+.+++
T Consensus 164 v~~~------~--p~NPtG~~~~~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 164 IVTI------S--PNNPTGVVYPEALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred EEEe------C--CCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 3321 2 3566664 3477789999988775
No 193
>PRK07503 methionine gamma-lyase; Provisional
Probab=48.66 E-value=2.1e+02 Score=32.08 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=52.8
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcch---HHHHHhh-hccEEEEce
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIGA 601 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLGA 601 (717)
.|++-+-+..+..+|......|. +|++. .|.+.+. .+...+...|+.+.++... .+...+. +...|++ .
T Consensus 83 ~i~~~sG~~Al~~~l~~ll~~Gd--~Viv~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~l-e 157 (403)
T PRK07503 83 AVALASGMGAITATLWTLLRPGD--EVIVD--QTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYF-E 157 (403)
T ss_pred EEEEcCHHHHHHHHHHHHcCCCC--EEEEc--cCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEE-e
Confidence 45555444555555544444444 45553 3555442 2334566789999888642 3333332 3445544 2
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.-.-..|.+.. -..|+-+|+.+|++|+|
T Consensus 158 ~p~NPtG~~~d---i~~I~~la~~~gi~lIv 185 (403)
T PRK07503 158 TPANPNMRLVD---IAAVAEIAHGAGAKVVV 185 (403)
T ss_pred CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 22223354443 25677888999998887
No 194
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=48.60 E-value=3.7e+02 Score=28.79 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=41.4
Q ss_pred cCCCeEEEecCc-----hHHHHHHHHHHHcCCeeEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcch-HHHHHhh---
Q psy17541 524 ANDDVILTYGCS-----SLVEKILLTAHEKGTKFRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLS-AVSYIMR--- 592 (717)
Q Consensus 524 ~dGdvILTyg~S-----StV~~vL~~A~e~Gk~FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DS-AVsyiM~--- 592 (717)
..+.+|+..|.+ +++..+...+...+...+|.+++..|+.-|. .+...-...|+++..+.+. .+...+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 345677777543 4555555555443122466777777766553 2333333468888766543 3444443
Q ss_pred hccEEEE
Q psy17541 593 EVSKVII 599 (717)
Q Consensus 593 ~VdkVLL 599 (717)
+.|.||+
T Consensus 272 ~~d~vli 278 (282)
T TIGR03499 272 DKDLILI 278 (282)
T ss_pred CCCEEEE
Confidence 3566665
No 195
>PRK08361 aspartate aminotransferase; Provisional
Probab=48.60 E-value=1.6e+02 Score=32.11 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=53.0
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-h------HHHHHhh---
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-S------AVSYIMR--- 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-S------AVsyiM~--- 592 (717)
+...++++|.|.+..+..++......|. +|+|.+ |.+.+.. ..+...|+++..++. . .+..+..
T Consensus 91 ~~~~~i~~t~G~~~al~~~~~~l~~~g~--~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 164 (391)
T PRK08361 91 VDVDNVIVTAGAYEATYLAFESLLEEGD--EVIIPD--PAFVCYV--EDAKIAEAKPIRIPLREENEFQPDPDELLELIT 164 (391)
T ss_pred CCcccEEEeCChHHHHHHHHHHhcCCCC--EEEEcC--CCCcccH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 4455788888877766555554433343 566554 6555532 334446877766642 1 1222222
Q ss_pred -hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..|++- .---..|.++..-=-..|+-+|+++++.++|
T Consensus 165 ~~~~~v~i~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 165 KRTRMIVIN-YPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred cccEEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 33344332 1111234444432224566778888886554
No 196
>PRK07324 transaminase; Validated
Probab=48.57 E-value=1.1e+02 Score=33.59 Aligned_cols=103 Identities=22% Similarity=0.280 Sum_probs=58.7
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch----------HHHHHh-
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS----------AVSYIM- 591 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS----------AVsyiM- 591 (717)
+....+|+|.|.+..+..++......|. +|++. .|.+.+.. ..+...|..+.++... ++...+
T Consensus 78 ~~~~~vi~t~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 151 (373)
T PRK07324 78 VKPENILQTNGATGANFLVLYALVEPGD--HVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENGWLPDLDELRRLVR 151 (373)
T ss_pred CChhhEEEcCChHHHHHHHHHHhCCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhCC
Confidence 3445688898888876666655544444 45553 46665532 2334578887777531 222223
Q ss_pred hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+++..|++. .-=-..|.++++.--..++-+|++|++.+++
T Consensus 152 ~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 152 PNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 234444333 2222346666655556778888999986664
No 197
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=48.43 E-value=2.1e+02 Score=31.95 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=51.0
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEcchHHHHHhh----hccEEEEce
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVLLSAVSYIMR----EVSKVIIGA 601 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~DSAVsyiM~----~VdkVLLGA 601 (717)
.|+|-+-+..+..+|......|. +|++ +.|.+.+ ..+...+...|+.+.++....+..+.. +...|++-
T Consensus 77 av~~~sG~~Ai~~~l~al~~~Gd--~Vi~--~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le- 151 (391)
T TIGR01328 77 AVATSSGMGAIAATLLTILKAGD--HLIS--DECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFE- 151 (391)
T ss_pred EEEECCHHHHHHHHHHHHhCCCC--EEEE--ecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEE-
Confidence 45554444555544444444444 4555 3355554 233445667899998887543333332 33333321
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.-.-..|.++. --.|+-+|+++|++|+|
T Consensus 152 ~p~Np~G~v~d---l~~I~~la~~~gi~liv 179 (391)
T TIGR01328 152 TPANPTMKLID---MERVCRDAHSQGVKVIV 179 (391)
T ss_pred CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 11112344433 23477778999999887
No 198
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=48.23 E-value=1.8e+02 Score=32.69 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=51.7
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EML-RRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA-~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLG 600 (717)
+.|++-+-...+..+|......|. +|++. .|.+.|- .+. ..+...|+++.++... .+...+. +...|++-
T Consensus 81 ~~i~~ssG~~Ai~~~l~all~~GD--~Vi~~--~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie 156 (398)
T PRK08249 81 AATAFSTGMAAISNTLYTFLKPGD--RVVSI--KDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLE 156 (398)
T ss_pred eEEEeCChHHHHHHHHHHhcCCCC--EEEEc--CCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEE
Confidence 344444444555555544444454 45553 3566653 233 3466789998876532 3333333 34455542
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
. ---..|.++. -..|+-+|+.++++|+|
T Consensus 157 ~-p~NPtg~v~d---l~~I~~la~~~gi~liv 184 (398)
T PRK08249 157 T-PTNPTLKIVD---IERLAAAAKKVGALVVV 184 (398)
T ss_pred C-CCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 1 1112333333 23578889999998876
No 199
>PRK08912 hypothetical protein; Provisional
Probab=48.21 E-value=2.1e+02 Score=31.15 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=51.0
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---------HHHHHh-hhccE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---------AVSYIM-REVSK 596 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---------AVsyiM-~~Vdk 596 (717)
++|+|.|.+..+..++......|. +|+|.+ |.+.+... .+...|+.+.++... .+-..+ +++..
T Consensus 89 ~i~~t~G~~~al~~~~~~~~~~gd--~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (387)
T PRK08912 89 EVMVTSGATEALAAALLALVEPGD--EVVLFQ--PLYDAYLP--LIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKA 162 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCCC--EEEEeC--CCchhhHH--HHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceE
Confidence 789999988886655554443343 455543 76665432 345578877665431 121222 23334
Q ss_pred EEEceeeEecCCCeecccchH-------HHHHHHHhCCCcEEe
Q psy17541 597 VIIGAHALLSNGAVMSRAGTA-------QVSLVARAFNVPVLA 632 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT~-------~VALaAK~~~VPVyV 632 (717)
|++ + ..-|.+|+. .++-+|+.|++.+++
T Consensus 163 v~l-------~-~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 163 VLL-------N-NPLNPAGKVFPREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred EEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCeEEEE
Confidence 433 2 234566653 366678888876553
No 200
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.08 E-value=91 Score=35.04 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=52.6
Q ss_pred cCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHh--CCCcEEEEcchHHHHHhhhccEEEEce
Q psy17541 524 ANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK--HQVDCSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 524 ~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~--~GI~vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
....+||.+|....=..+.+.+++.| ++|++.|.++... +...|.+ .||.+.+-... . ..+.++|.|+++.
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~---~~~~l~~~~~g~~~~~~~~~-~-~~~~~~d~vV~sp 76 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQG--IPFAVMDSREQPP---GLDTLAREFPDVELRCGGFD-C-ELLVQASEIIISP 76 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCC--CeEEEEeCCCCch---hHHHHHhhcCCcEEEeCCCC-h-HHhcCCCEEEECC
Confidence 34457888877654334444444455 5899999876432 3345766 47776653211 1 2245788887766
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
+|-.+ .+.-..|++.++||+
T Consensus 77 -~i~~~---------~p~~~~a~~~~i~i~ 96 (448)
T PRK03803 77 -GLALD---------TPALRAAAAMGIEVI 96 (448)
T ss_pred -CCCCC---------CHHHHHHHHCCCcEE
Confidence 44332 345555666666665
No 201
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=48.02 E-value=52 Score=34.08 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCeeEEEEcC--CCCchh--HHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEec-CCCeecc
Q psy17541 539 EKILLTAHEKGTKFRVIIVD--GSPWYE--GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLS-NGAVMSR 613 (717)
Q Consensus 539 ~~vL~~A~e~Gk~FrVIVvE--SRP~~E--Gr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVla-NG~VvNK 613 (717)
..+|..+ |..|.|++.| ..+... -+.++.+|+...- -+++...+ -|.+|||||.|+. ||-++.|
T Consensus 15 ~elL~~~---gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA-------~~va~~~~-~~~~VigaDtvv~ldgrilgK 83 (193)
T COG0424 15 RELLEQL---GIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKA-------RAVAARLP-PDALVIGADTVVVLDGRILGK 83 (193)
T ss_pred HHHHHHC---CCCeEEecCCCCCCcccCCCHHHHHHHHHHHHH-------HHHHHhCC-CCCEEEecCeEEEECCEEecC
Confidence 4455544 7899999764 333222 4778888876431 12222222 5899999999887 9999999
Q ss_pred cchHHHHH
Q psy17541 614 AGTAQVSL 621 (717)
Q Consensus 614 iGT~~VAL 621 (717)
-.+..-|.
T Consensus 84 P~~~~eA~ 91 (193)
T COG0424 84 PKDEEEAR 91 (193)
T ss_pred CCCHHHHH
Confidence 99987763
No 202
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=47.96 E-value=1.3e+02 Score=33.49 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=68.3
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCC---------CC-----chhH----HHHHHHHHhC-
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDG---------SP-----WYEG----KEMLRRLVKH- 575 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvES---------RP-----~~EG----r~lA~~L~~~- 575 (717)
|+..+.+++.+ ..||..|.+.+=-.++......|.. ++.++|. |- ..-| ..++++|.+.
T Consensus 18 ~g~~~q~~L~~-~~VlivG~GGlGs~~a~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 18 IGQQGQQSLFD-AKVAVIGAGGLGSPALLYLAGAGVG-HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred cCHHHHHHHhC-CeEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 56666777754 7899999987655666666666743 3333332 21 1123 2456677765
Q ss_pred -CCcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 576 -QVDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 576 -GI~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
.+.++.+. ...+..++.++|.||.+.|.+ .--+.+.-+|+.+++||+..+
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~---------~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNF---------DTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEE
Confidence 35555442 223445678899999988754 223568889999999988653
No 203
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=47.90 E-value=53 Score=27.44 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCee-EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhh
Q psy17541 540 KILLTAHEKGTKF-RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMR 592 (717)
Q Consensus 540 ~vL~~A~e~Gk~F-rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~ 592 (717)
+.+.+|.+.+.++ +||+.+..-...-..+...+.+.||++.++.+.-+..+-.
T Consensus 6 ~~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~ 59 (76)
T PF08032_consen 6 HAVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLSD 59 (76)
T ss_dssp HHHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCTT
T ss_pred HHHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHcC
Confidence 4456666666544 7888888333334578888999999999999887766653
No 204
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=47.88 E-value=2e+02 Score=25.82 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCcEEEEcchHHHHH----hhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 567 EMLRRLVKHQVDCSYVLLSAVSYI----MREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 567 ~lA~~L~~~GI~vTyI~DSAVsyi----M~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
.++..|...|.++..+.+...... +..-|.+|+- ...|.- .-+..++-.|+.+++++++++...
T Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i----S~~g~~---~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 30 YLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAI----SFSGET---KETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEE----eCCCCC---HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 345556666777777766554332 2344555542 234442 224556778999999999988754
No 205
>PRK05939 hypothetical protein; Provisional
Probab=47.85 E-value=2e+02 Score=32.33 Aligned_cols=94 Identities=12% Similarity=0.182 Sum_probs=53.5
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHHHHHHhCCCcEEEEcch---HHHHHhh-hccEEEEce
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEMLRRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIGA 601 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLGA 601 (717)
..|++-+-..++..+|......|. +|++.+ +.+-+ ..+...|...|+.+.++... ++-..+. +...|++
T Consensus 64 ~~v~~ssG~~Ai~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~v-- 137 (397)
T PRK05939 64 GTVCFATGMAAIAAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFV-- 137 (397)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEE--
Confidence 345444444555555555554554 566644 44443 34445677889999988643 3444443 3334433
Q ss_pred eeEecCCCeecccch----HHHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGT----AQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT----~~VALaAK~~~VPVyV 632 (717)
+ .+.|..|. ..|+-+|+++|++|+|
T Consensus 138 -----e-sp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 138 -----E-TIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred -----E-CCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 1 23444443 3477788999998887
No 206
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=47.77 E-value=34 Score=32.05 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=60.0
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeE-EEEcCCCC-chhHHHHHHHHH--hCCCcEEEEcchHHHHHhhhccEEEEceee
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFR-VIIVDGSP-WYEGKEMLRRLV--KHQVDCSYVLLSAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~Fr-VIVvESRP-~~EGr~lA~~L~--~~GI~vTyI~DSAVsyiM~~VdkVLLGAda 603 (717)
.|+.+|++.-+-+.|..+......|+ |-+++.++ ...|+.....+. ..|++++ ..+..++.++|.||-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~~~~~DVvID---- 73 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEELLEEADVVID---- 73 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHHTTH-SEEEE----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHhcccCCEEEE----
Confidence 58899997666777777666667777 44777777 455654433222 3455554 455666667775542
Q ss_pred EecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 604 LLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 604 VlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
.-+.-+++..+-.|.++++|+++.+--|
T Consensus 74 ------fT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 74 ------FTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp ------ES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred ------cCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 2366777888888888899999977655
No 207
>PRK07681 aspartate aminotransferase; Provisional
Probab=47.72 E-value=1.4e+02 Score=32.75 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=56.0
Q ss_pred ccC-CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH-------HHHHh---
Q psy17541 523 LAN-DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA-------VSYIM--- 591 (717)
Q Consensus 523 I~d-GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA-------VsyiM--- 591 (717)
+.. .++|+|.|.+..+..++......| -+|+|. .|.+.+...+ +...|+.+..++... +..+.
T Consensus 90 ~~~~~~I~it~G~~~al~~~~~~~~~~G--d~Vlv~--~P~y~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 163 (399)
T PRK07681 90 LNADKEVLLLMGSQDGLVHLPMVYANPG--DIILVP--DPGYTAYETG--IQMAGATSYYMPLKKENDFLPDLELIPEEI 163 (399)
T ss_pred CCCCCeEEECCCcHHHHHHHHHHhCCCC--CEEEEC--CCCccchHHH--HHhcCCEEEEEecCCCCCCcCCHHHHHHhc
Confidence 443 568888888887655554443334 345554 3777664333 345788887776321 11121
Q ss_pred -hhccEEEEc-eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 -REVSKVIIG-AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 -~~VdkVLLG-AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.++..|++- .+- ..|.++++---..|+-+|+.|++.|++
T Consensus 164 ~~~~k~v~l~~P~N--PTG~~~s~~~~~~i~~~a~~~~~~iI~ 204 (399)
T PRK07681 164 ADKAKMMILNFPGN--PVPAMAHEDFFKEVIAFAKKHNIIVVH 204 (399)
T ss_pred cccceEEEEeCCCC--CcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 234444432 111 225555544456777788999986653
No 208
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=47.57 E-value=1.4e+02 Score=32.80 Aligned_cols=103 Identities=19% Similarity=0.335 Sum_probs=51.3
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL----------SAVSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D----------SAVsyiM~ 592 (717)
+....+++|.|.+..+..++......|. +|++. .|.+... ...+...|+.+.++.. ..+-..+.
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~v~i~--~P~y~~~--~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~ 166 (401)
T TIGR01264 93 IEADDVVLCSGCSHAIEMCIAALANAGQ--NILVP--RPGFPLY--ETLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166 (401)
T ss_pred CCHHHEEECcChHHHHHHHHHHhCCCCC--EEEEe--CCCChhH--HHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc
Confidence 3344577888887776555554433343 45554 3666543 2334567888776642 11222222
Q ss_pred -hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+...|++. .-=-..|.+++.-=-..++-+|+++++.|++
T Consensus 167 ~~~~~v~~~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 167 EKTAALIVN-NPSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred cCceEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 33344331 1111123333322233466777888887664
No 209
>PRK07550 hypothetical protein; Provisional
Probab=47.17 E-value=1.8e+02 Score=31.76 Aligned_cols=102 Identities=18% Similarity=0.290 Sum_probs=53.7
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---H----HHHH---hh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---A----VSYI---MR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---A----Vsyi---M~ 592 (717)
+...++++|.|-+..+..++......|. +|+| ++ |.+-+... .+...|+++..+... . +..+ +.
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv-~~-p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVTLAGAGD--EVIL-PL-PWYFNHKM--WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHHhcCCCC--EEEE-cC-CCCcchHH--HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 4456788888877765544444333343 3444 43 76655432 334678887776631 1 2222 22
Q ss_pred -hccEEEEc-eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -EVSKVIIG-AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -~VdkVLLG-AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+...|++- .+ -..|.+++.-=-..|+-+|++++++|++
T Consensus 162 ~~~~~v~~~~P~--NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 162 PRTRAIALVTPN--NPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred ccCcEEEEeCCC--CCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 23343321 11 1225444433345677788999987764
No 210
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=46.59 E-value=34 Score=37.00 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=28.6
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
..|.-||-.++-.| .-|++|-+|||||+.++.-..++..
T Consensus 124 ~~v~iNG~~~gE~~--lNa~~Ag~~gVPV~lVsGDd~~~~e 162 (270)
T cd08769 124 YNIWINGKEMNETL--INAAYAGEFGVPVVLVAGDSELEKE 162 (270)
T ss_pred EEEEECCEEcCHHH--HHHHHHhhcCCCEEEEecCHHHHHH
Confidence 44555666665555 4679999999999999887777654
No 211
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=46.55 E-value=23 Score=39.93 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=38.9
Q ss_pred HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCccc
Q psy17541 586 AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFC 640 (717)
Q Consensus 586 AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs 640 (717)
-+-..++++|.||.|=-++-. =++..|+ ..-||-+||.|+|||+++|.+..-.
T Consensus 277 ~le~~v~daDLVITGEGr~D~-Qs~~GK~-pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 277 NLEDAVKDADLVITGEGRIDS-QSLHGKT-PIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred CHHHhhccCCEEEeCCCcccc-cccCCcc-chHHHHhhhhhCCCEEEEecccccC
Confidence 356678899999999766543 2444443 3458899999999999999976433
No 212
>PRK07050 cystathionine beta-lyase; Provisional
Probab=46.47 E-value=2.9e+02 Score=30.93 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=50.7
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHH-HHHHhCCCcEEEEcc---hHHHHHhhhccEEEEce
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EML-RRLVKHQVDCSYVLL---SAVSYIMREVSKVIIGA 601 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA-~~L~~~GI~vTyI~D---SAVsyiM~~VdkVLLGA 601 (717)
.+++|-|-+..+..+|......|. +|++.+ |.+.+- .++ ..+...|+.++++.. ..+...+..-+++|+=
T Consensus 82 ~~l~~~sgt~Ai~~~l~al~~~GD--~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~l- 156 (394)
T PRK07050 82 HALLQPSGLAAISLVYFGLVKAGD--DVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWL- 156 (394)
T ss_pred eEEEeccHHHHHHHHHHHHhCCCC--EEEEec--CCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEE-
Confidence 455555555555555544443343 566543 555552 333 345667888888743 3455555432333321
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+. .+.-.....=-..|+-+|+.++++|+|
T Consensus 157 e~--p~Np~~~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 157 EA--PGSVTMEVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred EC--CCCCCccHhhHHHHHHHHHHcCCEEEE
Confidence 10 111122222334567788999988776
No 213
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=46.41 E-value=83 Score=35.86 Aligned_cols=114 Identities=11% Similarity=0.176 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHH---HHHc-CCeeEEEEcCCCCchhH-HHHHHHHHhCCCcEEEEc
Q psy17541 509 DMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLT---AHEK-GTKFRVIIVDGSPWYEG-KEMLRRLVKHQVDCSYVL 583 (717)
Q Consensus 509 ~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~---A~e~-Gk~FrVIVvESRP~~EG-r~lA~~L~~~GI~vTyI~ 583 (717)
+.|++.|+... -..+.++|.|-|-.....-+|.- +... .+.-++|+.... ... ...++.|...|.+|||++
T Consensus 47 e~AR~~iA~ll--ga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl~ 122 (386)
T COG1104 47 EEAREQIAKLL--GADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYLP 122 (386)
T ss_pred HHHHHHHHHHh--CCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEeC
Confidence 34566666432 13456899999988765555553 3221 233466654332 223 467888877899999998
Q ss_pred chHHHHH-----hh--hccEEEEceeeEecCCCeecccchHH----HHHHHHhCCCcEEe
Q psy17541 584 LSAVSYI-----MR--EVSKVIIGAHALLSNGAVMSRAGTAQ----VSLVARAFNVPVLA 632 (717)
Q Consensus 584 DSAVsyi-----M~--~VdkVLLGAdaVlaNG~VvNKiGT~~----VALaAK~~~VPVyV 632 (717)
-..=|.+ .. +=|-+|+. | ..+=|-+||.| |+-+++.++++|.|
T Consensus 123 V~~~G~v~~e~L~~al~~~T~LVS---i---m~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 123 VDSNGLVDLEQLEEALRPDTILVS---I---MHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred CCCCCeEcHHHHHHhcCCCceEEE---E---EecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 6543222 11 12333332 1 23557788864 88999999999987
No 214
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.37 E-value=4.9e+02 Score=29.58 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=54.3
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHh--CCCcEEEEcchHHHHHhhhccEEEEcee
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK--HQVDCSYVLLSAVSYIMREVSKVIIGAH 602 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~--~GI~vTyI~DSAVsyiM~~VdkVLLGAd 602 (717)
.|..+..+|.+..+..+-....+.|....++++...+..--..+...|.. .+..+.++.+.-..-+...+..- ++|
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~--~pD 379 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTE--PVD 379 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhc--CCC
Confidence 57888888888777766666666788776566544322212223333444 23344444443333333211110 222
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 603 ALLSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 603 aVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
-+ +|+..-..+|+..|+|++.++-
T Consensus 380 li---------iG~s~~~~~a~~~gip~v~~~~ 403 (435)
T cd01974 380 LL---------IGNTYGKYIARDTDIPLVRFGF 403 (435)
T ss_pred EE---------EECccHHHHHHHhCCCEEEeeC
Confidence 22 2334456889999999987663
No 215
>PLN02242 methionine gamma-lyase
Probab=46.26 E-value=1.8e+02 Score=32.97 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=51.2
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHH-HHHHh-CCCcEEEEcch---HHHHHhhh-ccEEEE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EML-RRLVK-HQVDCSYVLLS---AVSYIMRE-VSKVII 599 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA-~~L~~-~GI~vTyI~DS---AVsyiM~~-VdkVLL 599 (717)
..++|-|-+..+..+|......|. +|++.+ |.+.|. .++ ..+.. .|+.++++... ++-..+.. -.++|+
T Consensus 93 ~~l~~~sG~~Ai~~al~al~~~GD--~Vl~~~--~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~ 168 (418)
T PLN02242 93 AAYCTASGMSAISSVLLQLCSSGG--HVVASN--TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLY 168 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEcC--CcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEE
Confidence 455555555565555555554454 455443 666553 333 23333 79888877532 34444433 133333
Q ss_pred ceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 600 GAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 600 GAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
--.---..|.++. -..|+-+|++++++|+|
T Consensus 169 lesp~NPtG~v~d---l~~I~~la~~~gi~liv 198 (418)
T PLN02242 169 FESISNPTLTVAD---IPELARIAHEKGVTVVV 198 (418)
T ss_pred EecCCCCCCcccC---HHHHHHHHHHhCCEEEE
Confidence 1111112343332 13567788999998876
No 216
>PRK05967 cystathionine beta-lyase; Provisional
Probab=46.23 E-value=2e+02 Score=32.57 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=58.1
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHH-HHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EML-RRLVKHQVDCSYVLL---SAVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA-~~L~~~GI~vTyI~D---SAVsyiM~-~VdkVLLG 600 (717)
+.|+|.+-+..+..++......|. +|++. .|.+.|- .++ ..|...||.++++.. .++...+. +...|++-
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~le 156 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTE 156 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 467777755666666666555555 56665 5666663 344 456778999999864 33555554 34444433
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.-. | -+....=-..|+-+|+++|++|+|
T Consensus 157 sPs---N-P~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 157 APG---S-NTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred CCC---C-CCCcHHHHHHHHHHHHHhCCEEEE
Confidence 211 1 122333335677888999987776
No 217
>PRK14852 hypothetical protein; Provisional
Probab=46.20 E-value=2e+02 Score=36.69 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCe-eEEE---EcC---
Q psy17541 486 DITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTK-FRVI---IVD--- 558 (717)
Q Consensus 486 ~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~-FrVI---VvE--- 558 (717)
+++.+.++ .+.-+.|..++...-...|+..+.++|.+ ..|++.|.+.+=-.++......|.. |+++ ++|
T Consensus 296 ~~~~~~~~---~~~~~~~~~~ry~Rqi~lig~e~Q~kL~~-srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SN 371 (989)
T PRK14852 296 GVPLDMLK---LETRDAYTDIAFSRNLGLVDYAGQRRLLR-SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVN 371 (989)
T ss_pred CCchHHHh---HHHHHHHHHHHhhchHhhcCHHHHHHHhc-CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccc
Confidence 44555554 34456666554332223456666777754 7899999997655555555556753 3333 112
Q ss_pred -CCCch-----hH----HHHHHHHHhC--CCcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHH
Q psy17541 559 -GSPWY-----EG----KEMLRRLVKH--QVDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLV 622 (717)
Q Consensus 559 -SRP~~-----EG----r~lA~~L~~~--GI~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALa 622 (717)
.|-.+ -| ..+++.|.+. .++++.+. ...+..++..+|.||-+.|.+..+ +--+... .
T Consensus 372 LNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~------~rr~l~~-~ 444 (989)
T PRK14852 372 LNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALD------IRRRLFN-R 444 (989)
T ss_pred cccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHH------HHHHHHH-H
Confidence 22111 13 2356667754 46666653 345667788999999877754211 2223333 3
Q ss_pred HHhCCCcEEeccc
Q psy17541 623 ARAFNVPVLAACE 635 (717)
Q Consensus 623 AK~~~VPVyV~cE 635 (717)
|..+|||||.++.
T Consensus 445 c~~~~IP~I~ag~ 457 (989)
T PRK14852 445 ALELGIPVITAGP 457 (989)
T ss_pred HHHcCCCEEEeec
Confidence 6889999997543
No 218
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=46.19 E-value=1.4e+02 Score=33.29 Aligned_cols=91 Identities=13% Similarity=0.174 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHcCCeeEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcchHHHHH---hh-hccEEEEceeeEecCC
Q psy17541 535 SSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLSAVSYI---MR-EVSKVIIGAHALLSNG 608 (717)
Q Consensus 535 SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DSAVsyi---M~-~VdkVLLGAdaVlaNG 608 (717)
+..+..+|......|. +|++ +.|.+.|- .+...+...|+.+.++....+..+ +. +...|++-- -.-..|
T Consensus 86 ~~Ai~~~l~all~~Gd--~Vl~--~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~-p~NPtg 160 (388)
T PRK07811 86 MAATDCLLRAVLRPGD--HIVI--PNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVET-PTNPLL 160 (388)
T ss_pred HHHHHHHHHHHhCCCC--EEEE--cCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEEC-CCCCcc
Confidence 3444444443433443 4555 44666652 333344556888887653322222 22 333443320 000112
Q ss_pred CeecccchHHHHHHHHhCCCcEEec
Q psy17541 609 AVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 609 ~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
.+ .--..|+-+|+.++++|+|=
T Consensus 161 ~~---~dl~~I~~la~~~gi~lIvD 182 (388)
T PRK07811 161 SI---TDIAALAELAHDAGAKVVVD 182 (388)
T ss_pred ee---cCHHHHHHHHHHcCCEEEEE
Confidence 22 23346777889999988773
No 219
>PRK10342 glycerate kinase I; Provisional
Probab=46.11 E-value=25 Score=39.83 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=38.2
Q ss_pred HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCccc
Q psy17541 586 AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFC 640 (717)
Q Consensus 586 AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs 640 (717)
.+-..|+.+|.||.|==++-. --..--.-..||-.|+.|+||||++|.+....
T Consensus 277 ~l~~~l~~ADLVITGEG~~D~--QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 277 NLEEHIHDCTLVITGEGRIDS--QSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred CHHHHhccCCEEEECCCcCcc--cccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 345667899999999655532 22233345678889999999999999987544
No 220
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=46.03 E-value=1.9e+02 Score=30.36 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=48.5
Q ss_pred CeEEEecCchHHH---HHHHHHHHc--CCeeEE-EEcCCCCchhHHHHHHHHHhCCCc-EEEEcchHHHHHhhhccEEEE
Q psy17541 527 DVILTYGCSSLVE---KILLTAHEK--GTKFRV-IIVDGSPWYEGKEMLRRLVKHQVD-CSYVLLSAVSYIMREVSKVII 599 (717)
Q Consensus 527 dvILTyg~SStV~---~vL~~A~e~--Gk~FrV-IVvESRP~~EGr~lA~~L~~~GI~-vTyI~DSAVsyiM~~VdkVLL 599 (717)
.+|+.+|.+.-.. .+|..|... ....++ +++...+. ..+-..+.+.|+. .......-+..+|..+|.+++
T Consensus 180 ~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~---~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~ 256 (348)
T TIGR01133 180 PTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKNDL---EKVKNVYQELGIEAIVTFIDENMAAAYAAADLVIS 256 (348)
T ss_pred eEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcchH---HHHHHHHhhCCceEEecCcccCHHHHHHhCCEEEE
Confidence 4687887654322 223334321 122333 33332222 2344445556763 222223267889999998875
Q ss_pred ceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 600 GAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 600 GAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
- .| ....+=|-..|+|++++.
T Consensus 257 ~-------------~g-~~~l~Ea~~~g~Pvv~~~ 277 (348)
T TIGR01133 257 R-------------AG-ASTVAELAAAGVPAILIP 277 (348)
T ss_pred C-------------CC-hhHHHHHHHcCCCEEEee
Confidence 1 13 234557778899999863
No 221
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=45.36 E-value=35 Score=36.89 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=28.4
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 603 ALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 603 aVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
.|.-||-.++-.|- -|++|.+|||||+.++.-..++..
T Consensus 125 ~v~iNG~~~gE~~l--na~~Ag~~gVPV~lvsGD~~~~~e 162 (263)
T cd08770 125 YVKINGEIASEFLI--NAYTAAYLGVPVVFVSGDAGLCAE 162 (263)
T ss_pred EEEECCEEcCHHHH--HHHHHhhcCCCEEEEecCHHHHHH
Confidence 34456666655554 579999999999999888777763
No 222
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=45.20 E-value=68 Score=34.99 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=62.3
Q ss_pred EEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhc--cEEEEceeeEec
Q psy17541 529 ILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREV--SKVIIGAHALLS 606 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~V--dkVLLGAdaVla 606 (717)
||..|...-+-.-|..+.. ..+.|+.++.+... +.-...+..++.+. |.||=-|--.--
T Consensus 3 iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~D-----------------itd~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 3 ILITGANGQLGTELRRALP--GEFEVIATDRAELD-----------------ITDPDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred EEEEcCCChHHHHHHHHhC--CCceEEeccCcccc-----------------ccChHHHHHHHHhhCCCEEEECcccccc
Confidence 7888888777777777753 56788888766511 11112233333322 333333221111
Q ss_pred C--------CCeecccchHHHHHHHHhCCCcEEecccCCcccccc
Q psy17541 607 N--------GAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERV 643 (717)
Q Consensus 607 N--------G~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~rv 643 (717)
| -..+|-.|+..+|.+|++.|.+++-+.--|=|+-.-
T Consensus 64 D~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~ 108 (281)
T COG1091 64 DKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEK 108 (281)
T ss_pred ccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCC
Confidence 2 235899999999999999999999999999888653
No 223
>PRK07877 hypothetical protein; Provisional
Probab=44.94 E-value=1.8e+02 Score=35.69 Aligned_cols=122 Identities=20% Similarity=0.179 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHH-HHHHHHcCC--eeEEE---EcC----CC----CchhHH--
Q psy17541 503 YIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKI-LLTAHEKGT--KFRVI---IVD----GS----PWYEGK-- 566 (717)
Q Consensus 503 fI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~v-L~~A~e~Gk--~FrVI---VvE----SR----P~~EGr-- 566 (717)
|..+|...-...|+..+.++|.+ ..|++.|.+ |-.. +......|. ++.++ ++| -| ...-|+
T Consensus 85 ~~~~r~~Rn~~~ig~~~Q~~L~~-~~V~IvG~G--lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~K 161 (722)
T PRK07877 85 FRAVRLDRNRNKITAEEQERLGR-LRIGVVGLS--VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNK 161 (722)
T ss_pred hhHHHhhchhhhCCHHHHHHHhc-CCEEEEEec--HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHH
Confidence 44444443344577777888865 678888875 3332 333334563 45544 222 12 122242
Q ss_pred --HHHHHHHhC--CCcEEEEcc----hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 567 --EMLRRLVKH--QVDCSYVLL----SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 567 --~lA~~L~~~--GI~vTyI~D----SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
.+++.|.+. .|+|+.+.. ..+..++..+|.||=+.|.+- .=+.+--.|..++||++..+..
T Consensus 162 v~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~---------~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 162 AVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLD---------VKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEcCC
Confidence 345566654 477776664 356777889999999998652 2356778899999999998853
No 224
>PRK08114 cystathionine beta-lyase; Provisional
Probab=44.89 E-value=1.2e+02 Score=34.26 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=54.0
Q ss_pred hccCCCeEEEecCc-hHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHH-HHHHhCCCcEEEEcc---hHHHHHhhhccE
Q psy17541 522 KLANDDVILTYGCS-SLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEML-RRLVKHQVDCSYVLL---SAVSYIMREVSK 596 (717)
Q Consensus 522 ~I~dGdvILTyg~S-StV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA-~~L~~~GI~vTyI~D---SAVsyiM~~Vdk 596 (717)
.|..|.-.+.++.+ .++..+|...+..|. +|++.+. .+..-..+. ..|.+.||+|+++.. ..+...+..-++
T Consensus 73 ~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD--~Vv~~~~-~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~Tr 149 (395)
T PRK08114 73 ELEGGAGCALYPCGAAAVANAILAFVEQGD--HVLMTGT-AYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTK 149 (395)
T ss_pred HHhCCCeEEEEhHHHHHHHHHHHHHcCCCC--EEEEeCC-CcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCce
Confidence 35566544444334 444555555555555 4555432 232224444 457778999999863 345555543334
Q ss_pred EEEceeeEecCCCeecccch----HHHHHHHHhCC--CcEEe
Q psy17541 597 VIIGAHALLSNGAVMSRAGT----AQVSLVARAFN--VPVLA 632 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT----~~VALaAK~~~--VPVyV 632 (717)
+|.- + .+.|..|. ..|+-+||.++ ++++|
T Consensus 150 lV~~-E------tpsNp~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 150 VVFL-E------SPGSITMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred EEEE-E------CCCCCCCEeecHHHHHHHHHHhCCCCEEEE
Confidence 4321 1 23344332 45778888874 87776
No 225
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=44.85 E-value=1.7e+02 Score=34.25 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=49.0
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH----------------HHHHHHHhCCCcEEEEc---
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK----------------EMLRRLVKHQVDCSYVL--- 583 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr----------------~lA~~L~~~GI~vTyI~--- 583 (717)
+..|+.|+++|-+..=+.+...+.+.|. +|+|+|.+|...|. .-...+.+.|+++.+-.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH--AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 5678999999998765555566666664 68889977654331 12334567888765522
Q ss_pred -chHHHHHhhhccEEEEcee
Q psy17541 584 -LSAVSYIMREVSKVIIGAH 602 (717)
Q Consensus 584 -DSAVsyiM~~VdkVLLGAd 602 (717)
|-.+..+....|.||++.-
T Consensus 212 ~~~~~~~~~~~~D~Vi~AtG 231 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAIG 231 (564)
T ss_pred CcCCHHHHHhhCCEEEEeeC
Confidence 2123334446788887553
No 226
>PRK07671 cystathionine beta-lyase; Provisional
Probab=44.50 E-value=2.4e+02 Score=31.29 Aligned_cols=90 Identities=16% Similarity=0.292 Sum_probs=48.1
Q ss_pred EecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcchHHHHH---hh-hccEEEEceeeE
Q psy17541 531 TYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLSAVSYI---MR-EVSKVIIGAHAL 604 (717)
Q Consensus 531 Tyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DSAVsyi---M~-~VdkVLLGAdaV 604 (717)
.++.+.....++..+...|. +|+|.+ |.+.|. .++..+...|+.+.++...-+..+ +. +...|++-
T Consensus 70 ~~~sG~aai~~~~~~l~~Gd--~Viv~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le---- 141 (377)
T PRK07671 70 AFGSGMAAITAVMMLFSSGD--HVILTD--DVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVE---- 141 (377)
T ss_pred EeCCHHHHHHHHHHHhCCCC--EEEECC--CccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEE----
Confidence 34444333333334444454 566644 666652 345566778999988864333333 32 34444441
Q ss_pred ecCCCeecccc----hHHHHHHHHhCCCcEEe
Q psy17541 605 LSNGAVMSRAG----TAQVSLVARAFNVPVLA 632 (717)
Q Consensus 605 laNG~VvNKiG----T~~VALaAK~~~VPVyV 632 (717)
...|..| -..|+-+|+.++++++|
T Consensus 142 ----~P~NPtg~~~dl~~I~~la~~~g~~lvv 169 (377)
T PRK07671 142 ----TPTNPLLKITDIKKISTIAKEKGLLTIV 169 (377)
T ss_pred ----CCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 1123333 33577788999988776
No 227
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.40 E-value=53 Score=33.75 Aligned_cols=101 Identities=18% Similarity=0.058 Sum_probs=62.0
Q ss_pred EEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEE--Ecc-hHHHHHhhhc-cEEEEceeeE
Q psy17541 529 ILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSY--VLL-SAVSYIMREV-SKVIIGAHAL 604 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTy--I~D-SAVsyiM~~V-dkVLLGAdaV 604 (717)
||+.|.+.-|-.-|.....+. ..+|++++..+....... .++.... +.| ..+...+..+ |.||.-|-..
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 888888877766666554332 456776665443322111 2222221 123 5566667777 7777666555
Q ss_pred ecCCC---------eecccchHHHHHHHHhCCCcEEecccC
Q psy17541 605 LSNGA---------VMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 605 laNG~---------VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
...+. ..|-.||..+.-+|+..+++-+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 44333 589999999999999988877776554
No 228
>PRK08960 hypothetical protein; Provisional
Probab=44.40 E-value=1.6e+02 Score=32.20 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=51.2
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-h------HHHHHhh---
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-S------AVSYIMR--- 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-S------AVsyiM~--- 592 (717)
+...++++|.|.+..+..++......|. +|+|. .|.+.+...... ..|..+..+.. . .+..+..
T Consensus 90 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (387)
T PRK08960 90 VDPERILVTPGGSGALLLASSLLVDPGK--HWLLA--DPGYPCNRHFLR--LVEGAAQLVPVGPDSRYQLTPALVERHWN 163 (387)
T ss_pred CChhhEEEccCcHHHHHHHHHHhcCCCC--EEEEc--CCCCcchHHHHH--hcCCeEEEEecCcccCCCCCHHHHHHHhC
Confidence 4566788998888876665544443343 45553 477666433333 34666655542 1 1222222
Q ss_pred -hccEEEEceeeEecCCCeecccchH-------HHHHHHHhCCCcEEe
Q psy17541 593 -EVSKVIIGAHALLSNGAVMSRAGTA-------QVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -~VdkVLLGAdaVlaNG~VvNKiGT~-------~VALaAK~~~VPVyV 632 (717)
+...|++ .| .-|..|+. .++-+|+.+++.+++
T Consensus 164 ~~~~~i~i------~~--p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 164 ADTVGALV------AS--PANPTGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred ccceEEEE------EC--CCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 2223322 22 23566653 566678889886654
No 229
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=44.37 E-value=1.2e+02 Score=33.18 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=61.1
Q ss_pred HHHHHHhhcc--CCCeEEEecCchHHHHHHHHHHHcCCee-EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHh
Q psy17541 515 ICMFFHNKLA--NDDVILTYGCSSLVEKILLTAHEKGTKF-RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIM 591 (717)
Q Consensus 515 Ia~~A~e~I~--dGdvILTyg~SStV~~vL~~A~e~Gk~F-rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM 591 (717)
++-.+.+++. +-.+|..+|.+.....-++.... -..+ +|+|.+ |-...-..++.++.+.|+++....+. .-++
T Consensus 115 ~salaa~~La~~~~~~lgiiG~G~qA~~~l~al~~-~~~~~~v~V~~-r~~~~~~~~~~~~~~~g~~v~~~~~~--~eav 190 (325)
T TIGR02371 115 AGGVAAKYLARKDSSVLGIIGAGRQAWTQLEALSR-VFDLEEVSVYC-RTPSTREKFALRASDYEVPVRAATDP--REAV 190 (325)
T ss_pred HHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEC-CCHHHHHHHHHHHHhhCCcEEEeCCH--HHHh
Confidence 3344455553 44688899988765544432222 2333 455554 43333456778888889887776543 3556
Q ss_pred hhccEEEEce---ee-----EecCCCeecccchH
Q psy17541 592 REVSKVIIGA---HA-----LLSNGAVMSRAGTA 617 (717)
Q Consensus 592 ~~VdkVLLGA---da-----VlaNG~VvNKiGT~ 617 (717)
.++|.|+.-. +- .+..|..++-+|++
T Consensus 191 ~~aDiVitaT~s~~P~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 191 EGCDILVTTTPSRKPVVKADWVSEGTHINAIGAD 224 (325)
T ss_pred ccCCEEEEecCCCCcEecHHHcCCCCEEEecCCC
Confidence 8999998755 22 34678889999975
No 230
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=44.24 E-value=1.5e+02 Score=34.64 Aligned_cols=123 Identities=14% Similarity=0.114 Sum_probs=69.9
Q ss_pred HHHHhhccCCCeEEEecC--chH----HHHHHHHHHH---cC--CeeEEEEcCC-C------CchhH----------HHH
Q psy17541 517 MFFHNKLANDDVILTYGC--SSL----VEKILLTAHE---KG--TKFRVIIVDG-S------PWYEG----------KEM 568 (717)
Q Consensus 517 ~~A~e~I~dGdvILTyg~--SSt----V~~vL~~A~e---~G--k~FrVIVvES-R------P~~EG----------r~l 568 (717)
+.|+.+|+|||+|..-|+ ... +..+..++.+ .| +.++++..-+ . +...| -..
T Consensus 6 eEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp~ 85 (485)
T TIGR03458 6 DEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDPT 85 (485)
T ss_pred HHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCHH
Confidence 446678999999998876 222 2222233322 12 3455554211 1 11112 123
Q ss_pred HHHHHhCC-CcEEEEcchHHHHHhh-----hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 569 LRRLVKHQ-VDCSYVLLSAVSYIMR-----EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 569 A~~L~~~G-I~vTyI~DSAVsyiM~-----~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
.+++.+.| +.+.-+..+.+...+. ++|.+|+=+...-.+|.+.=-........+|+.. ..|||-++ +..++
T Consensus 86 ~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~aA-k~VIvEVN--~~mP~ 162 (485)
T TIGR03458 86 LRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLELA-DKVIVEVN--TWQPL 162 (485)
T ss_pred HHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHhC-CEEEEEEC--CCCCh
Confidence 56676777 4555556677877774 5899999999999999886555444444444443 44555443 33444
No 231
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=44.17 E-value=2.6e+02 Score=31.23 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=52.4
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHHHHHH-hCCCcEEEEcc---hHHHHHh-hhccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEMLRRLV-KHQVDCSYVLL---SAVSYIM-REVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA~~L~-~~GI~vTyI~D---SAVsyiM-~~VdkVLLG 600 (717)
++|+|.|-+..+..+|......|. +|++.+ |.+.| ..+...+. ..|+.+.++.. .++...+ ++...|+|-
T Consensus 69 ~~i~~~sg~~Ai~~~l~~l~~~GD--~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~ 144 (386)
T PRK08045 69 GAVLTNTGMSAIHLVTTVFLKPGD--LLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_pred eEEEECCHHHHHHHHHHHHcCCCC--EEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEE
Confidence 466666666666555554444443 555543 66766 44444444 35578887642 2233333 244555552
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.---..|.++. -..|+-+|+.++++|+|
T Consensus 145 -sP~NPtG~v~d---i~~I~~ia~~~g~~viv 172 (386)
T PRK08045 145 -SPSNPLLRVVD---IAKICHLAREAGAVSVV 172 (386)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11112344443 24677788999987765
No 232
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=44.17 E-value=5.6e+02 Score=29.58 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCC-CCchhHHHHHHHHHh-CCCcEEEEcchHHHH
Q psy17541 512 GNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDG-SPWYEGKEMLRRLVK-HQVDCSYVLLSAVSY 589 (717)
Q Consensus 512 ~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvES-RP~~EGr~lA~~L~~-~GI~vTyI~DSAVsy 589 (717)
.+.|.+....++ .|..+..+|-+..+..+-.-..+.|..+.++++-+ .+..+....++.|.+ .+..+.++.+.-..-
T Consensus 292 ~~~~~~~~~~~l-~Gkrv~i~g~~~~~~~l~~fl~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e 370 (454)
T cd01973 292 IDALADLAHMFF-ANKKVAIFGHPDLVIGLAEFCLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWE 370 (454)
T ss_pred HHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHHHHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHH
Confidence 344444333334 58888888888776666665556788876655544 555555556666632 344445555544443
Q ss_pred HhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec-ccCC
Q psy17541 590 IMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA-CETH 637 (717)
Q Consensus 590 iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~-cEty 637 (717)
+...+..--.++|-|+.| ..---+|+..+||++.+ .+.|
T Consensus 371 ~~~~i~~~~~~~dliig~---------s~~~~~A~~~gip~~~~g~Pv~ 410 (454)
T cd01973 371 LEKRIKNKGLELDLILGH---------SKGRYIAIDNNIPMVRVGFPTF 410 (454)
T ss_pred HHHHHHhcCCCCCEEEEC---------CccHHHHHHcCCCEEEecCCee
Confidence 332111100123444332 22346788899999876 4555
No 233
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=43.94 E-value=2.2e+02 Score=31.93 Aligned_cols=91 Identities=20% Similarity=0.074 Sum_probs=50.4
Q ss_pred CCeEEEecCch---------HHHHHHHHHHHcCCeeEEEEcC-CCCchhHHHHHHHHHhCCCc----------------E
Q psy17541 526 DDVILTYGCSS---------LVEKILLTAHEKGTKFRVIIVD-GSPWYEGKEMLRRLVKHQVD----------------C 579 (717)
Q Consensus 526 GdvILTyg~SS---------tV~~vL~~A~e~Gk~FrVIVvE-SRP~~EGr~lA~~L~~~GI~----------------v 579 (717)
..+|+.++-|+ .+..++....+. ..+.+++.= ..+.. ..+...+.+.|++ +
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~~~~~~~~~--~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 281 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLAAIVPSLSL--EKLQAILEDLGWQLEGSSEDQTSLFQKGTL 281 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEEEeCCCCCH--HHHHHHHHhcCceecCCccccchhhccCce
Confidence 35788887776 333333333222 355555432 22322 2344455555654 3
Q ss_pred EEEc-chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 580 SYVL-LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 580 TyI~-DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
.++. ...+..+|..+|.||. +.||.. +=+-.+++|++++=
T Consensus 282 ~v~~~~~~~~~~l~~ADlvI~-------------rSGt~T--~E~a~lg~P~Ilip 322 (396)
T TIGR03492 282 EVLLGRGAFAEILHWADLGIA-------------MAGTAT--EQAVGLGKPVIQLP 322 (396)
T ss_pred EEEechHhHHHHHHhCCEEEE-------------CcCHHH--HHHHHhCCCEEEEe
Confidence 3332 2346778888887643 467655 55777899999875
No 234
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=43.81 E-value=2.2e+02 Score=24.71 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=25.7
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
++|+|++|++.. |.+-...-+...--++++..+||+|+
T Consensus 102 ~~dliv~G~~~~---~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 102 NADLIVMGSRGR---SGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TCSEEEEESSST---TSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred cceeEEEeccCC---CCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 699999999883 22333333444555666778999985
No 235
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=43.77 E-value=67 Score=35.30 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=71.0
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEce--eeE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGA--HAL 604 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGA--daV 604 (717)
|.-+.|=...-+...+.+|.+.|.+.-|+++|.=|...=..+.+++.+.| +.+|=-+.-+.+.+... -||- .-|
T Consensus 67 ~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~--kiGimp~~i 142 (293)
T COG0074 67 NASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGEC--KIGIMPGNI 142 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcc--eeeechhhh
Confidence 44455555555678889999999999999999999999999999999988 66666777777777653 3333 555
Q ss_pred ecCC--CeecccchH--HHHHHHHhCCCcEE
Q psy17541 605 LSNG--AVMSRAGTA--QVSLVARAFNVPVL 631 (717)
Q Consensus 605 laNG--~VvNKiGT~--~VALaAK~~~VPVy 631 (717)
+.-| ++++|.||+ .++--=.+.+.=++
T Consensus 143 ~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS 173 (293)
T COG0074 143 YKPGNIGIVSRSGTLTYEAVSQLTEAGLGQS 173 (293)
T ss_pred ccCCceEEEecCcchHHHHHHHHHhcCCceE
Confidence 6556 468888865 44443344444333
No 236
>KOG0781|consensus
Probab=43.66 E-value=76 Score=37.41 Aligned_cols=68 Identities=25% Similarity=0.269 Sum_probs=41.8
Q ss_pred cCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-----HHHHHHHHh------------CCCcEEEEcchHHHHHhh-hc
Q psy17541 533 GCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-----KEMLRRLVK------------HQVDCSYVLLSAVSYIMR-EV 594 (717)
Q Consensus 533 g~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-----r~lA~~L~~------------~GI~vTyI~DSAVsyiM~-~V 594 (717)
|.|.....+-.-. ...+|+|+|+-+-+...| |-.+++|.. .|=+.+.|.-.|+.|.-. ..
T Consensus 390 GKSTNLAKIayWL--lqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gf 467 (587)
T KOG0781|consen 390 GKSTNLAKIAYWL--LQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGF 467 (587)
T ss_pred cccchHHHHHHHH--HhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCC
Confidence 6777655543333 346799999999999999 345777763 233444444445555443 36
Q ss_pred cEEEEcee
Q psy17541 595 SKVIIGAH 602 (717)
Q Consensus 595 dkVLLGAd 602 (717)
|.||+-..
T Consensus 468 DVvLiDTA 475 (587)
T KOG0781|consen 468 DVVLIDTA 475 (587)
T ss_pred CEEEEecc
Confidence 77766543
No 237
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.43 E-value=5.1e+02 Score=29.32 Aligned_cols=99 Identities=13% Similarity=0.223 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHHHHHHh------CCC-----cEEEEcchHHHHH-h------h---h
Q psy17541 536 SLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEMLRRLVK------HQV-----DCSYVLLSAVSYI-M------R---E 593 (717)
Q Consensus 536 StV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA~~L~~------~GI-----~vTyI~DSAVsyi-M------~---~ 593 (717)
+++...+.+|.. +.+.|+++|+.=.++- ..|..+|.+ .-+ .+-+++|+..|.= + . .
T Consensus 208 aVafDAi~~Aka--r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~ 285 (340)
T COG0552 208 AVAFDAIQAAKA--RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG 285 (340)
T ss_pred HHHHHHHHHHHH--cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC
Confidence 466777777754 5577888887765554 356666664 112 2555556544321 1 1 1
Q ss_pred ccEEEE-ceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCcccccccC
Q psy17541 594 VSKVII-GAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQT 645 (717)
Q Consensus 594 VdkVLL-GAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~rv~~ 645 (717)
+|-++| =.| | -+|-|+ +--+++.+++||+.++---+.++..++
T Consensus 286 l~GiIlTKlD-----g--tAKGG~--il~I~~~l~~PI~fiGvGE~~~DL~~F 329 (340)
T COG0552 286 LDGIILTKLD-----G--TAKGGI--ILSIAYELGIPIKFIGVGEGYDDLRPF 329 (340)
T ss_pred CceEEEEecc-----c--CCCcce--eeeHHHHhCCCEEEEeCCCChhhcccc
Confidence 232222 111 1 122232 335688999999988755555554433
No 238
>PRK08328 hypothetical protein; Provisional
Probab=43.28 E-value=2.3e+02 Score=29.48 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=65.7
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcC---------CCC-----chhHH-----HHHHHHHhC
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVD---------GSP-----WYEGK-----EMLRRLVKH 575 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvE---------SRP-----~~EGr-----~lA~~L~~~ 575 (717)
++..+.++|.+ ..||..|.+.+=-.++......|.. +++++| .|- ..-|+ ..+++|.+.
T Consensus 17 ~g~~~q~~L~~-~~VlIiG~GGlGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~ 94 (231)
T PRK08328 17 FGVEGQEKLKK-AKVAVVGVGGLGSPVAYYLAAAGVG-RILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF 94 (231)
T ss_pred cCHHHHHHHhC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh
Confidence 66667777754 7899999988766666666666754 333334 111 11232 123445553
Q ss_pred --CCcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 576 --QVDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 576 --GI~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
.|.+..+. ...+..+++.+|.||...|..- .-+.+.-+|+.+++|++...
T Consensus 95 np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~---------~r~~l~~~~~~~~ip~i~g~ 150 (231)
T PRK08328 95 NSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFE---------TRYLLDDYAHKKGIPLVHGA 150 (231)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEe
Confidence 45555433 2234456778898888776632 22456667999999998643
No 239
>PRK10116 universal stress protein UspC; Provisional
Probab=43.12 E-value=2.2e+02 Score=26.06 Aligned_cols=36 Identities=31% Similarity=0.276 Sum_probs=26.8
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
.+|+|++|.+.--. +.+.|+ ...-+.++.++||+|+
T Consensus 102 ~~DLiV~g~~~~~~----~~~~~s-~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 102 HFDLVICGNHNHSF----FSRASC-SAKRVIASSEVDVLLV 137 (142)
T ss_pred CCCEEEEcCCcchH----HHHHHH-HHHHHHhcCCCCEEEE
Confidence 69999999986522 444553 3456788899999997
No 240
>PRK15456 universal stress protein UspG; Provisional
Probab=43.11 E-value=79 Score=29.28 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=24.9
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
++|+|++|.+.- ..+.. -+|+-.-. +.++.++||+|+
T Consensus 105 ~~DLIVmG~~g~-~~~~~--llGS~a~~-v~~~a~~pVLvV 141 (142)
T PRK15456 105 GADVVVIGSRNP-SISTH--LLGSNASS-VIRHANLPVLVV 141 (142)
T ss_pred CCCEEEEcCCCC-Cccce--ecCccHHH-HHHcCCCCEEEe
Confidence 689999999862 22222 25765444 466778999986
No 241
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=43.10 E-value=2.3e+02 Score=29.12 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=63.6
Q ss_pred HHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCC---------Cc----hhH----HHHHHHHHhC-
Q psy17541 514 AICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGS---------PW----YEG----KEMLRRLVKH- 575 (717)
Q Consensus 514 ~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESR---------P~----~EG----r~lA~~L~~~- 575 (717)
.++..+.++|.+ ..|+..|.+.+=-.++......|.. +++++|-. -. .-| ..++++|.+.
T Consensus 17 ~~g~~~q~~L~~-~~V~ViG~GglGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln 94 (212)
T PRK08644 17 RHTPKLLEKLKK-AKVGIAGAGGLGSNIAVALARSGVG-NLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN 94 (212)
T ss_pred hcCHHHHHHHhC-CCEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC
Confidence 366677777755 5788888887655555555555654 34433322 11 113 2456666654
Q ss_pred -CCcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhC-CCcEEeccc
Q psy17541 576 -QVDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAF-NVPVLAACE 635 (717)
Q Consensus 576 -GI~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~-~VPVyV~cE 635 (717)
.+.++.+. +..+..++..+|.||-..|.+.. .+.+.-.|..+ ++|++..+.
T Consensus 95 p~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~---------r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 95 PFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAET---------KAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred CCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHH---------HHHHHHHHHHhCCCCEEEeeh
Confidence 45655443 33344567788988777554421 23344445555 999998743
No 242
>PRK08363 alanine aminotransferase; Validated
Probab=42.99 E-value=1.4e+02 Score=32.62 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=49.5
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEE-c-ch-H----HHHH---h-
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYV-L-LS-A----VSYI---M- 591 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI-~-DS-A----Vsyi---M- 591 (717)
+...++++|.|.+..+..++......|. +|++. .|.+.+... .+...|..+..+ . +. . +..+ +
T Consensus 91 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~Vl~~--~p~y~~~~~--~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 164 (398)
T PRK08363 91 ITPDDVRVTAAVTEALQLIFGALLDPGD--EILIP--GPSYPPYTG--LVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT 164 (398)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHH--HHHHcCCEEEEeccccccCCcCCHHHHHhhCC
Confidence 3445688888888776665554433343 45554 366665432 223356554444 2 11 0 1111 1
Q ss_pred hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++...|++- +-=-..|.+++.-=-..++-+|+.+++.+++
T Consensus 165 ~~~~~v~l~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~ 204 (398)
T PRK08363 165 EKTKAIAVI-NPNNPTGALYEKKTLKEILDIAGEHDLPVIS 204 (398)
T ss_pred cceEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 123334331 1111233333322234466667888877664
No 243
>PRK05942 aspartate aminotransferase; Provisional
Probab=42.95 E-value=2e+02 Score=31.61 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=52.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch-H------HHHHh----hhcc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS-A------VSYIM----REVS 595 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS-A------VsyiM----~~Vd 595 (717)
.+|+|.|.+..+..++......|. +|+|. .|.+.+...+ +...|+.+..+... . +..+. +++.
T Consensus 99 ~i~vt~G~~~al~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 172 (394)
T PRK05942 99 EALPLLGSKEGLTHLALAYVNPGD--VVLVP--SPAYPAHFRG--PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK 172 (394)
T ss_pred eEEEccChHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHH--HHHcCCEEEEeecCCccCCccCHHHHHHhccccce
Confidence 467788888876666655544453 45543 4777764332 23478887776421 1 11111 2344
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.|+|. .-=-..|.++++-=-..++-+|+.+++.|++
T Consensus 173 ~i~l~-~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 173 ILYFN-YPSNPTTATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred EEEEc-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 44443 1111234444443334566678899986554
No 244
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=42.72 E-value=2.9e+02 Score=30.95 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=47.9
Q ss_pred EEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHH-HH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEcee
Q psy17541 529 ILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKE-ML-RRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIGAH 602 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~-lA-~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLGAd 602 (717)
+++.+-+..+..+|......|. +|++. +|.+.|.. +. ..+...|++++++... .+...+. +...|++ ..
T Consensus 84 ~~~~sG~~Ai~~~l~~~l~~Gd--~Vl~~--~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~l-es 158 (398)
T PRK07504 84 RATASGMAAVTAAILCQVKAGD--HVVAA--RALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFL-ES 158 (398)
T ss_pred eEecCHHHHHHHHHHHHhCCCC--EEEEc--CCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEE-EC
Confidence 3343334444444443344443 45554 35666642 22 2345678888887532 2333332 3333433 22
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 603 ALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 603 aVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
-.-..|.++. -..|+-+|+++|++|+|
T Consensus 159 p~NptG~v~d---l~~I~~la~~~gi~lvv 185 (398)
T PRK07504 159 PTNPTLEVID---IAAVAKIANQAGAKLVV 185 (398)
T ss_pred CCCCCcEecC---HHHHHHHHHHcCCEEEE
Confidence 2222344443 35677788889988776
No 245
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=42.51 E-value=1.6e+02 Score=32.51 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=60.4
Q ss_pred CCCeEEEecCc----hHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---HHHHHhh--hcc
Q psy17541 525 NDDVILTYGCS----SLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---AVSYIMR--EVS 595 (717)
Q Consensus 525 dGdvILTyg~S----StV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---AVsyiM~--~Vd 595 (717)
.|..|-.|+-| ..+..++....+.+..++|+|+=+- ..|..++..+...++.+.|.+.- .+..+++ +-|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 46789999888 3455666666666777788766554 33566776665667888888743 3445554 357
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
.|++.-.-+.. .+...|+..++|++++.
T Consensus 127 ~v~~~~~~~~~-----------~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 127 LVIIMETELWP-----------NLIAELKRRGIPLVLAN 154 (425)
T ss_pred EEEEEecchhH-----------HHHHHHHHCCCCEEEEe
Confidence 66542111111 12345788999999864
No 246
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=42.35 E-value=2e+02 Score=31.28 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=49.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHH-------HHHh----hhcc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAV-------SYIM----REVS 595 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAV-------syiM----~~Vd 595 (717)
.+|+|.|.+..+..++......|. .|+| + .|.+.+.... +...|+.+..++...- ..+. .++.
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPGD--FALL-L-DPGYPSHAGG--VYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQAR 167 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHH--HHhcCCEEEEEECCCccCCCCCHHHHHHhhcccce
Confidence 477788888876655554444443 3444 3 3777765332 3346888777654211 1111 2233
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
.++|-- -=-..|.+++.-=-..++-+|+.|++.++
T Consensus 168 ~i~l~~-p~NPTG~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 168 LMVLSY-PHNPTTAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred EEEEeC-CCCCCCccCCHHHHHHHHHHHHHcCeEEE
Confidence 332211 00111444433333466777888887655
No 247
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=42.14 E-value=2.4e+02 Score=29.99 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=53.1
Q ss_pred CeEEEecCchH---HHHHHHHHHHc-CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-hHHHHHhhhccEEEEce
Q psy17541 527 DVILTYGCSSL---VEKILLTAHEK-GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-SAVSYIMREVSKVIIGA 601 (717)
Q Consensus 527 dvILTyg~SSt---V~~vL~~A~e~-Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-SAVsyiM~~VdkVLLGA 601 (717)
-+|+.+|.+.- ...+|..|... .....+++.=++... ..+...+. .|+.+.++-- ..+..+|..+|.+++.+
T Consensus 184 ~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~--~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~ 260 (357)
T PRK00726 184 PTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL--EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRA 260 (357)
T ss_pred eEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH--HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECC
Confidence 46888887642 23344344332 222233333222222 34455565 8887544432 46888999999998632
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
| ....+-|-.+|+||+++..-
T Consensus 261 ------g--------~~~~~Ea~~~g~Pvv~~~~~ 281 (357)
T PRK00726 261 ------G--------ASTVAELAAAGLPAILVPLP 281 (357)
T ss_pred ------C--------HHHHHHHHHhCCCEEEecCC
Confidence 2 13455677889999998653
No 248
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.06 E-value=1e+02 Score=31.07 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=46.1
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeeccc-chHHHHHHHHhCCCcEE
Q psy17541 553 RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRA-GTAQVSLVARAFNVPVL 631 (717)
Q Consensus 553 rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKi-GT~~VALaAK~~~VPVy 631 (717)
+|.|+|--=.+- ..+++.|.+.|+++.++.+. .-+.++|.|+++--.... .....+ +......-+...++|++
T Consensus 2 ~~~v~~~~~~~~-~~~~~~l~~~G~~~~~~~~~---~~~~~~d~iii~G~~~~~--~~~~~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 2 MIVIIDYGVGNL-RSVSKALERAGAEVVITSDP---EEILDADGIVLPGVGAFG--AAMENLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred eEEEEECCCccH-HHHHHHHHHCCCeEEEECCH---HHHccCCEEEECCCCCHH--HHHHHHHHHHHHHHHHHHcCCCEE
Confidence 455555432222 56888999999998888643 234578888776411110 011111 11222233445689999
Q ss_pred ecccCCcccc
Q psy17541 632 AACETHKFCE 641 (717)
Q Consensus 632 V~cEtyKFs~ 641 (717)
-+|--+-+--
T Consensus 76 gIC~G~q~l~ 85 (200)
T PRK13143 76 GICLGMQLLF 85 (200)
T ss_pred EECHHHHHHh
Confidence 9887665443
No 249
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=41.80 E-value=59 Score=32.31 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHH
Q psy17541 500 IATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKE 567 (717)
Q Consensus 500 IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~ 567 (717)
...|- +++....+.+.+...++-..|..|..||.|.--..+|.. ..-+.++-.+|+|..|.-+|+-
T Consensus 43 y~~f~-~~~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~-~g~~~~~I~~vvD~np~K~G~~ 108 (160)
T PF08484_consen 43 YENFA-KRVEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNY-FGLDNDLIDYVVDDNPLKQGKY 108 (160)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHH-HT--TTTS--EEES-GGGTTEE
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHH-hCCCcceeEEEEeCChhhcCcc
Confidence 34444 456666677777777777899999999998763444444 3334455677888889999973
No 250
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=41.66 E-value=2.1e+02 Score=25.71 Aligned_cols=45 Identities=16% Similarity=0.020 Sum_probs=35.4
Q ss_pred CCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceee
Q psy17541 559 GSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 559 SRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAda 603 (717)
++...+-...++.+.+.|+++..|+++.-+.+-+.+|.+|.-...
T Consensus 63 sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~ 107 (131)
T PF01380_consen 63 SGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPTG 107 (131)
T ss_dssp SSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEESS
T ss_pred cccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecCC
Confidence 333444567888999999999999999888888889988865543
No 251
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=41.59 E-value=2e+02 Score=32.13 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=63.5
Q ss_pred CCCeEEEecCch---HHHHHHHHHHHcCC-eeEEEEcCCCCchhHHHHHHHHHhCC-CcEEEEcchHHHHHhhhccEEEE
Q psy17541 525 NDDVILTYGCSS---LVEKILLTAHEKGT-KFRVIIVDGSPWYEGKEMLRRLVKHQ-VDCSYVLLSAVSYIMREVSKVII 599 (717)
Q Consensus 525 dGdvILTyg~SS---tV~~vL~~A~e~Gk-~FrVIVvESRP~~EGr~lA~~L~~~G-I~vTyI~DSAVsyiM~~VdkVLL 599 (717)
+-.+||+.|-|. .+..++..+..... ++.|+..-++-..+ .+...+.+.| +.+....|+ |..+|..+|.|
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~--~~~~~~~~~~~~~v~~f~~d-m~~~~~~ADLv-- 256 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLE--ELKSAYNELGVVRVLPFIDD-MAALLAAADLV-- 256 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHH--HHHHHHhhcCcEEEeeHHhh-HHHHHHhccEE--
Confidence 557999999884 44555666554433 57777665554433 3455666677 444444454 77778888876
Q ss_pred ceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCc
Q psy17541 600 GAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHK 638 (717)
Q Consensus 600 GAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyK 638 (717)
+.|.|...|+-++ ..++|.+++=.-+.
T Consensus 257 -----------IsRaGa~Ti~E~~-a~g~P~IliP~p~~ 283 (357)
T COG0707 257 -----------ISRAGALTIAELL-ALGVPAILVPYPPG 283 (357)
T ss_pred -----------EeCCcccHHHHHH-HhCCCEEEeCCCCC
Confidence 5678888887655 45999998765554
No 252
>PRK12414 putative aminotransferase; Provisional
Probab=41.49 E-value=1.6e+02 Score=32.26 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=49.5
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---------HHHHHhh-hccE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---------AVSYIMR-EVSK 596 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---------AVsyiM~-~Vdk 596 (717)
++|+|.|.+..+..++......|. +|++. .|.+.+.... +...|..+..+... .+-..+. ++..
T Consensus 92 ~i~it~g~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 165 (384)
T PRK12414 92 EVTVIASASEGLYAAISALVHPGD--EVIYF--EPSFDSYAPI--VRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRM 165 (384)
T ss_pred cEEEECChHHHHHHHHHHhcCCCC--EEEEe--CCCccchHHH--HHHcCCEEEEEecCccccccCHHHHHhhcCcccEE
Confidence 588888877775555554444443 45553 4666553332 23357766665432 1111221 2233
Q ss_pred EEEceeeEecCCCeecccch-------HHHHHHHHhCCCcEEe
Q psy17541 597 VIIGAHALLSNGAVMSRAGT-------AQVSLVARAFNVPVLA 632 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT-------~~VALaAK~~~VPVyV 632 (717)
|+| + ..-|.+|+ ..++-+|++|++++++
T Consensus 166 v~i-------~-~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 166 IIV-------N-TPHNPSATVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred EEE-------c-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 332 2 23466665 4466678889987775
No 253
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=41.40 E-value=38 Score=37.04 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=47.9
Q ss_pred ccCC-CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEE
Q psy17541 523 LAND-DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVII 599 (717)
Q Consensus 523 I~dG-dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLL 599 (717)
|..+ .+||..|.+..-..++..|.+. .++|++++..|...|..++... +.+-+....++..+.. .+|.|+.
T Consensus 8 ~~~~~~~ilIiG~g~~~~~~~~a~~~~--G~~v~~~~~~~~~~~~~~ad~~----~~~~~~d~~~l~~~~~~~~id~vi~ 81 (395)
T PRK09288 8 LSPSATRVMLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHRS----HVIDMLDGDALRAVIEREKPDYIVP 81 (395)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCchHHhhhhe----EECCCCCHHHHHHHHHHhCCCEEEE
Confidence 4334 4899999987767777777654 4688999999987776544321 1111111234555555 6888888
Q ss_pred ceeeE
Q psy17541 600 GAHAL 604 (717)
Q Consensus 600 GAdaV 604 (717)
+.+.+
T Consensus 82 ~~e~~ 86 (395)
T PRK09288 82 EIEAI 86 (395)
T ss_pred eeCcC
Confidence 87654
No 254
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=41.31 E-value=2.1e+02 Score=32.26 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=67.7
Q ss_pred HHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCC---------CCch-----hHH----HHHHHHHhC
Q psy17541 514 AICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDG---------SPWY-----EGK----EMLRRLVKH 575 (717)
Q Consensus 514 ~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvES---------RP~~-----EGr----~lA~~L~~~ 575 (717)
.++..+..++.+ ..||..|.+.+=-.++......|.. ++.++|. |-.+ -|+ .+++.|.+.
T Consensus 31 ~~g~~~q~~L~~-~~VlviG~GGlGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~ 108 (392)
T PRK07878 31 DVGVDGQKRLKN-ARVLVIGAGGLGSPTLLYLAAAGVG-TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI 108 (392)
T ss_pred hcCHHHHHHHhc-CCEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh
Confidence 466666777765 6899999987766666666666754 4444442 2211 231 345566665
Q ss_pred C--CcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 576 Q--VDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 576 G--I~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
. +.++.+. ...+..++..+|.||.+.|.+. --+.+.-+|+.+++|++..
T Consensus 109 np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~---------~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 109 NPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFA---------TRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred CCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 4 5554443 2234556788999988776542 3456778899999997653
No 255
>PRK08636 aspartate aminotransferase; Provisional
Probab=41.15 E-value=2.5e+02 Score=30.97 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=57.4
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc---h-----------HHHHHhh
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL---S-----------AVSYIMR 592 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D---S-----------AVsyiM~ 592 (717)
.+|+|.|....+..++......|. .|+| + .|.+.+...+.. ..|+++..++. . .+..+++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPGD--VAIV-P-DPAYPIHSQAFI--LAGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHHHH--hcCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 589999998886666654443343 4444 4 388877654433 37887776642 2 1222222
Q ss_pred ----hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 ----EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 ----~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..+++-- -=-..|.+++.-==..|+-+|++|++.+++
T Consensus 171 ~~~~~~~~i~~~~-P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 171 ESSPKPKYVVVNF-PHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred hccCCceEEEEeC-CCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 344444421 012346666655556778889999988774
No 256
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=41.02 E-value=4.4e+02 Score=28.57 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=51.8
Q ss_pred CCCeEEEecCchHHHHHHHHHHH----cCCeeEEEEcCC-CCchhHHHHHHHHHhCCCcEEEEcch--------HHHHHh
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHE----KGTKFRVIIVDG-SPWYEGKEMLRRLVKHQVDCSYVLLS--------AVSYIM 591 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e----~Gk~FrVIVvES-RP~~EGr~lA~~L~~~GI~vTyI~DS--------AVsyiM 591 (717)
..++++|.|.+..+..++..+.. .+..-+|++.+. .|.+.. ....+...|+++.+|+.. .+...+
T Consensus 60 ~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~--~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i 137 (382)
T TIGR03403 60 LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRA--TCAFLESLGVEVTYLPINEQGTITAEQVREAI 137 (382)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHH--HHHHHHHCCCEEEEEecCCCCCCCHHHHHHhc
Confidence 34577777766555544443321 121225666553 243332 334556689998888532 222223
Q ss_pred h-hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 R-EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~-~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
. +...|++ .+.=...|.++. + ..|+-+|+.+|++++|
T Consensus 138 ~~~t~lv~~-~~~~n~tG~~~~-~--~~I~~la~~~g~~~iv 175 (382)
T TIGR03403 138 TEKTALVSV-MWANNETGMIFP-I--KEIGEICKERGVLFHT 175 (382)
T ss_pred ccCCeEEEE-EcccCCCccccC-H--HHHHHHHHHcCCEEEE
Confidence 2 2333333 222223344333 2 3577788899988876
No 257
>PRK13937 phosphoheptose isomerase; Provisional
Probab=40.98 E-value=3.9e+02 Score=26.80 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVII 599 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLL 599 (717)
...++.+.+.|+++..|+...-+.+.+.+|.+|.
T Consensus 123 ~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~ 156 (188)
T PRK13937 123 LAALEKARELGMKTIGLTGRDGGKMKELCDHLLI 156 (188)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 4567777778888888877666666666777664
No 258
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=40.78 E-value=1.6e+02 Score=27.60 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=26.4
Q ss_pred eEEEecCchHHHHHHHHHHHc-CCeeEEEEcCCCCchhHHHHHHHHHh
Q psy17541 528 VILTYGCSSLVEKILLTAHEK-GTKFRVIIVDGSPWYEGKEMLRRLVK 574 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~-Gk~FrVIVvESRP~~EGr~lA~~L~~ 574 (717)
+|.||.....+...|....++ ...|+|+|+|.....+....++.+..
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~ 50 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED 50 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh
Confidence 355666666666666665543 24477777765544444444554443
No 259
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=40.75 E-value=92 Score=36.11 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=59.3
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
|..|+++|...+=+.+.+..++.| ..|+|.|.||.-++.... .|...||.+..-.... .....+|.|++.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~S----- 76 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVKS----- 76 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEEC-----
Confidence 778888877644344555555545 789999999998765444 6667787766654332 334456666443
Q ss_pred cCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 606 SNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 606 aNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
=++ -.+.++.-.|+..|+||+
T Consensus 77 --PGi---~~~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 77 --PGI---PPTHPLVEAAKAAGIEII 97 (448)
T ss_pred --CCC---CCCCHHHHHHHHcCCcEE
Confidence 233 245567788889999976
No 260
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=40.53 E-value=2.3e+02 Score=31.30 Aligned_cols=94 Identities=21% Similarity=0.416 Sum_probs=49.8
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc----------hHHHHHh-hh
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL----------SAVSYIM-RE 593 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D----------SAVsyiM-~~ 593 (717)
..++|+|-|.+..+..++......|. +|++. +|.+.+... .+...|+.+.++.. ..+-..+ ++
T Consensus 96 ~~~ii~t~G~t~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 169 (403)
T TIGR01265 96 ADDVVLTSGCSQAIEICIEALANPGA--NILVP--RPGFPLYDT--RAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEK 169 (403)
T ss_pred HHHEEEecChHHHHHHHHHHhCCCCC--EEEEe--CCCchhHHH--HHHHcCCEEEEecCCcccCCccCHHHHHHHhCcC
Confidence 44677787776665555554433443 34443 366655332 23456877776642 1222222 13
Q ss_pred ccEEEEceeeEecCCCeecccchH-------HHHHHHHhCCCcEEe
Q psy17541 594 VSKVIIGAHALLSNGAVMSRAGTA-------QVSLVARAFNVPVLA 632 (717)
Q Consensus 594 VdkVLLGAdaVlaNG~VvNKiGT~-------~VALaAK~~~VPVyV 632 (717)
...|++ .|. -|..|+. .|+-+|+.+|++|++
T Consensus 170 ~~~v~i------~~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 170 TVAIVV------INP--SNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred ccEEEE------ecC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 344433 221 3556654 466678889988876
No 261
>PRK07179 hypothetical protein; Provisional
Probab=40.45 E-value=3.2e+02 Score=30.14 Aligned_cols=107 Identities=11% Similarity=0.055 Sum_probs=53.8
Q ss_pred hhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc--c-hHHHHHhhh--cc
Q psy17541 521 NKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL--L-SAVSYIMRE--VS 595 (717)
Q Consensus 521 e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~--D-SAVsyiM~~--Vd 595 (717)
+++.-..+|+|.|-+.++..+|......| -.|++ +. +..-. +...+...|+++..+. | ..+...+.+ ..
T Consensus 110 ~~~g~~~~~~~~sG~~An~~~l~~l~~~g--~~v~~-~~-~~h~s--~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~ 183 (407)
T PRK07179 110 AFTGFESCLLCQSGWAANVGLLQTIADPN--TPVYI-DF-FAHMS--LWEGVRAAGAQAHPFRHNDVDHLRRQIERHGPG 183 (407)
T ss_pred HHhCCCcEEEECCHHHHHHHHHHHhCCCC--CEEEE-EC-CcCHH--HHHHHHHCCCeEEEecCCCHHHHHHHHHhcCCe
Confidence 33433456776666666655555544333 34555 32 22221 2223344677766552 2 345555543 22
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCc
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHK 638 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyK 638 (717)
.|+ .+.+....+.+..+ ..|+-+|+.+++.|+| =|.|-
T Consensus 184 lV~--v~~v~n~tG~i~pl--~~I~~l~~~~~~~liv-Dea~~ 221 (407)
T PRK07179 184 IIV--VDSVYSTTGTIAPL--ADIVDIAEEFGCVLVV-DESHS 221 (407)
T ss_pred EEE--ECCCCCCCCccccH--HHHHHHHHHcCCEEEE-ECccc
Confidence 333 34455433444443 4677788999986654 34443
No 262
>PRK06207 aspartate aminotransferase; Provisional
Probab=40.44 E-value=3.1e+02 Score=30.37 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=50.5
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-------------hHHHHHh-
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-------------SAVSYIM- 591 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-------------SAVsyiM- 591 (717)
.++++|.|.+..+..++......|. +|+| + .|.+.+.. ..+...|..+..+.. ..+...+
T Consensus 103 ~~I~it~Ga~~al~~~~~~l~~~Gd--~Vlv-~-~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~ 176 (405)
T PRK06207 103 DELIITPGTQGALFLAVAATVARGD--KVAI-V-QPDYFANR--KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK 176 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCCC--EEEE-e-CCCchhHH--HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh
Confidence 5789999888877666555544443 4444 3 37776633 333445766655432 1222222
Q ss_pred hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+++..|++--= =-..|.+++.-==..|+-+|+.|++.|++
T Consensus 177 ~~~k~v~l~~P-~NPTG~~~s~e~l~~l~~~a~~~~~~iI~ 216 (405)
T PRK06207 177 AGVRVFLFSNP-NNPAGVVYSAEEIAQIAALARRYGATVIV 216 (405)
T ss_pred hcCeEEEECCC-CCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 23444433211 01123333322223466778888987664
No 263
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=40.39 E-value=3.7e+02 Score=26.37 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=37.8
Q ss_pred eEEEecCchHHHHHHHHHHHcC---CeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc
Q psy17541 528 VILTYGCSSLVEKILLTAHEKG---TKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL 583 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~G---k~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~ 583 (717)
+|.||.....+..+|....++. ..|+|||+|.....+-..+++.+......+.++.
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~ 63 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLID 63 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEe
Confidence 4666776677777777776554 4688888887766655666677766555566664
No 264
>PRK13566 anthranilate synthase; Provisional
Probab=40.38 E-value=1.2e+02 Score=37.29 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=51.4
Q ss_pred cCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHh--hhccEEEE-ceeeEecCCCeecccchHHHHHHHH
Q psy17541 548 KGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIM--REVSKVII-GAHALLSNGAVMSRAGTAQVSLVAR 624 (717)
Q Consensus 548 ~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM--~~VdkVLL-GAdaVlaNG~VvNKiGT~~VALaAK 624 (717)
.|...+|.|+|-...+- ..+++.|.+.|++|+++....-...+ .++|.||| |-- |. .+..+...+--.|.
T Consensus 523 ~~~g~~IlvID~~dsf~-~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGp-----gs-p~d~~~~~lI~~a~ 595 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFV-HTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGP-----GR-PSDFDCKATIDAAL 595 (720)
T ss_pred CCCCCEEEEEECCCchH-HHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCC-----CC-hhhCCcHHHHHHHH
Confidence 45666888888775443 36888999999999998865322222 25677766 221 11 12234444444555
Q ss_pred hCCCcEEecccCC
Q psy17541 625 AFNVPVLAACETH 637 (717)
Q Consensus 625 ~~~VPVyV~cEty 637 (717)
..++||+=+|=-+
T Consensus 596 ~~~iPILGIClG~ 608 (720)
T PRK13566 596 ARNLPIFGVCLGL 608 (720)
T ss_pred HCCCcEEEEehhH
Confidence 6799999776443
No 265
>PRK06767 methionine gamma-lyase; Provisional
Probab=40.36 E-value=2.5e+02 Score=31.08 Aligned_cols=98 Identities=12% Similarity=0.151 Sum_probs=48.8
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHHHH-HHhCCCcEEEEcch---HHHHHh-hhccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EMLRR-LVKHQVDCSYVLLS---AVSYIM-REVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA~~-L~~~GI~vTyI~DS---AVsyiM-~~VdkVLLG 600 (717)
+.|++-+-+..+..+|......|. +|++. +|.+.+. .+... +...|+++.++... .+-..+ ++..+|++-
T Consensus 78 ~al~~~sG~~Ai~~~l~al~~~Gd--~Vv~~--~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~le 153 (386)
T PRK06767 78 EALAFGSGMAAISATLIGFLKAGD--HIICS--NGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVE 153 (386)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEc--CCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEe
Confidence 445554444444444444443443 45553 3555442 33333 34568888876422 233333 234445442
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.---..|.++. -..|+-+|++++++|+|
T Consensus 154 -sp~NptG~v~d---l~~I~~la~~~g~~viv 181 (386)
T PRK06767 154 -TPINPTMKLID---LKQVIRVAKRNGLLVIV 181 (386)
T ss_pred -CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 11112344443 25677788999988776
No 266
>PRK07049 methionine gamma-lyase; Validated
Probab=40.28 E-value=2.2e+02 Score=32.28 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=34.0
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HH-HHHHHhCCCcEEEEcc
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EM-LRRLVKHQVDCSYVLL 584 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~l-A~~L~~~GI~vTyI~D 584 (717)
.++|+|-|-+..+..+|......|. +|++. .|.+.|. .+ ...|...|+++..+.|
T Consensus 99 ~~~iv~~sG~~Ai~~~l~al~~~Gd--~Vv~~--~p~Y~~~~~~~~~~l~~~Gi~~v~~~~ 155 (427)
T PRK07049 99 ESAALFSSGMSAIATTLLAFVRPGD--VILHS--QPLYGGTETLLAKTFRNFGVGAVGFAD 155 (427)
T ss_pred CcEEEEccHHHHHHHHHHHHhCCCC--EEEEc--CCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence 3677777767776666666655565 45543 4777774 33 3456778998555543
No 267
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=40.20 E-value=2.3e+02 Score=27.86 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=59.4
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCC--CchhHHHHHHHHHhCCCcEEEEc-c----hHHHHHhh-------h
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGS--PWYEGKEMLRRLVKHQVDCSYVL-L----SAVSYIMR-------E 593 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESR--P~~EGr~lA~~L~~~GI~vTyI~-D----SAVsyiM~-------~ 593 (717)
.|+|=|.+.+-..+.+...+.+ .-+|+++-.+ +..+...+..+|.+.|..+.|+. | .++..++. .
T Consensus 3 ylitGG~gglg~~la~~La~~~-~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERG-ARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEECCccHHHHHHHHHHHHcC-CCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 3444456666555666666666 4466666555 44556789999999999999986 3 23444443 4
Q ss_pred ccEEEEceeeEecCCCeeccc-------------chHHHHHHHHhCCCcEEecccCC
Q psy17541 594 VSKVIIGAHALLSNGAVMSRA-------------GTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 594 VdkVLLGAdaVlaNG~VvNKi-------------GT~~VALaAK~~~VPVyV~cEty 637 (717)
++-||-+|-. +.++.+.+.. |+..+.-+...+.+.|+|++.+.
T Consensus 82 i~gVih~ag~-~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSi 137 (181)
T PF08659_consen 82 IDGVIHAAGV-LADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSI 137 (181)
T ss_dssp EEEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEH
T ss_pred cceeeeeeee-ecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECCh
Confidence 6778777754 5577666632 44444444444677777765543
No 268
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=40.11 E-value=3.3e+02 Score=28.77 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=52.9
Q ss_pred CeE-EEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc--------------hHHHHHh
Q psy17541 527 DVI-LTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL--------------SAVSYIM 591 (717)
Q Consensus 527 dvI-LTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D--------------SAVsyiM 591 (717)
.++ +|-|.+..+..+|..+...|. +|++. ||.+.+..-+ +...|+.+.++.. ..+...+
T Consensus 76 ~~~~~~~Gst~a~~~~l~al~~~gd--~Vlv~--~~~h~s~~~~--~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l 149 (294)
T cd00615 76 HTFFLVNGTSSSNKAVILAVCGPGD--KILID--RNCHKSVING--LVLSGAVPVYLKPERNPYYGIAGGIPPETFKKAL 149 (294)
T ss_pred CEEEEcCcHHHHHHHHHHHcCCCCC--EEEEe--CCchHHHHHH--HHHCCCEEEEecCccCcccCcCCCCCHHHHHHHH
Confidence 344 466655555555555443333 45553 5555554333 3346777666631 1233334
Q ss_pred h---hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 592 R---EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 592 ~---~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
. ++..|++-.. ...|.++. -..|+-+|+.++++++|=
T Consensus 150 ~~~~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~livD 189 (294)
T cd00615 150 IEHPDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLVD 189 (294)
T ss_pred HhCCCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEEE
Confidence 2 3556666532 23565554 356888999999998883
No 269
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=40.10 E-value=3.3e+02 Score=30.35 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=54.4
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHHH-HHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEMLR-RLVKHQVDCSYVLL---SAVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA~-~L~~~GI~vTyI~D---SAVsyiM~-~VdkVLLG 600 (717)
++++|-|-+..+..+|......|. +|++. .|.+.+ ..++. .+...|+++.++.. ..+...+. +...|++-
T Consensus 67 ~~~~~~sG~~Ai~~al~all~~GD--~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~le 142 (377)
T TIGR01324 67 GCYLYPSGLAAVTNSILAFVKAGD--HVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLE 142 (377)
T ss_pred cEEEECcHHHHHHHHHHHhcCCCC--EEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 566666666666666655544454 46665 455554 34443 45678999888742 34544454 33333321
Q ss_pred eeeEecCCCeecccchH----HHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTA----QVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~----~VALaAK~~~VPVyV 632 (717)
++.|..|.. .|+-+|+.+|++++|
T Consensus 143 --------sp~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 143 --------APSSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 234444533 467788999988876
No 270
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=40.00 E-value=2e+02 Score=31.66 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=53.7
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch--------HHHHHhhhc
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS--------AVSYIMREV 594 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS--------AVsyiM~~V 594 (717)
+++|.-|+.+++++++..++..+ +.|.+.||++++|... .+...+++.
T Consensus 198 l~~G~di~iva~G~~~~~a~eAa------------------------~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~ 253 (327)
T PRK09212 198 LREGSDVTIVTFSIQVKLALEAA------------------------ELLEKEGISVEVIDLRTLRPLDTETIIESVKKT 253 (327)
T ss_pred EEeCCCEEEEEccHHHHHHHHHH------------------------HHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhC
Confidence 45566566666666655544433 3455555555554322 344555677
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhC----CCcEEecccCCcc
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAF----NVPVLAACETHKF 639 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~----~VPVyV~cEtyKF 639 (717)
..|| +++++.+..-.|.....+++... ..|+.-++-..-|
T Consensus 254 ~~vv-----~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~ 297 (327)
T PRK09212 254 NRLV-----VVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVP 297 (327)
T ss_pred CeEE-----EEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCcc
Confidence 7775 66788888888988888888874 3466655544433
No 271
>PRK10481 hypothetical protein; Provisional
Probab=39.91 E-value=1.7e+02 Score=31.05 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch----HHHHHhhhcc-EEEEceeeEecCCCeeccc
Q psy17541 540 KILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS----AVSYIMREVS-KVIIGAHALLSNGAVMSRA 614 (717)
Q Consensus 540 ~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS----AVsyiM~~Vd-kVLLGAdaVlaNG~VvNKi 614 (717)
.-+..|...|.+|-|++..- .++....++....|+++.+...+ ....+..-+. ..--|||+|+-++.=++.
T Consensus 120 ~~lv~Al~~g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~- 195 (224)
T PRK10481 120 PPLVAAIVGGHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ- 195 (224)
T ss_pred HHHHHHhcCCCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH-
Confidence 44556666789999998442 23456667777789998877622 1111111111 112467777766655554
Q ss_pred chHHHHHHHHhCCCcEEe
Q psy17541 615 GTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 615 GT~~VALaAK~~~VPVyV 632 (717)
-..+.+.+..|+||+-
T Consensus 196 --~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 196 --RHRDLLQKALDVPVLL 211 (224)
T ss_pred --HHHHHHHHHHCcCEEc
Confidence 4478999999999984
No 272
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.82 E-value=1.6e+02 Score=33.74 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=51.5
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
+..|+.+|....=..+.+.++..| ++|++.|+++..+. ...|.+.|+.+.+....-....+...|.||+... |-
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~---~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~-I~ 80 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPN---LAALRAELPDAEFVGGPFDPALLDGVDLVALSPG-LS 80 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchh---HHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCC-CC
Confidence 556888876654344455555556 58999999875433 2347777655444432211233457788877543 22
Q ss_pred cCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 606 SNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 606 aNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
.+- .=++++-..|++.++||+
T Consensus 81 ~~~-----~~~~~~~~~a~~~~i~v~ 101 (498)
T PRK02006 81 PLE-----AALAPLVAAARERGIPVW 101 (498)
T ss_pred Ccc-----cccCHHHHHHHHCCCcEE
Confidence 110 001244445566666666
No 273
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=39.77 E-value=3.3e+02 Score=30.31 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=53.1
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHHHHH-HhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEMLRRL-VKHQVDCSYVLL---SAVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA~~L-~~~GI~vTyI~D---SAVsyiM~-~VdkVLLG 600 (717)
++++|-|.+..+..++......|. +|++ ..|.+.| ..+...+ ...|+.+.++.. ..+...+. +...|++-
T Consensus 68 ~v~~~~gg~~Ai~~~l~all~~GD--~Vl~--~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~ 143 (382)
T TIGR02080 68 GAVVTNTGMSAIHLVTTALLGPDD--LLVA--PHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIE 143 (382)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCCC--EEEE--cCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 466666666666555555544443 4444 4467766 4454454 344688887642 23333342 34444442
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.---..|.++. -..|+-+|+.++++|+|
T Consensus 144 -~p~NPtG~~~d---l~~I~~la~~~g~~vvv 171 (382)
T TIGR02080 144 -TPSNPLLRVVD---IAKICHLAKAVGAVVVV 171 (382)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11123355544 24677778999987665
No 274
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=39.67 E-value=80 Score=36.40 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=41.4
Q ss_pred CCeEEEecCch--HHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHH-HhCCC--cEEEEcchHHHHHhh-hccEEE
Q psy17541 526 DDVILTYGCSS--LVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRL-VKHQV--DCSYVLLSAVSYIMR-EVSKVI 598 (717)
Q Consensus 526 GdvILTyg~SS--tV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L-~~~GI--~vTyI~DSAVsyiM~-~VdkVL 598 (717)
+.+||..|.++ +|..+|..+...+...+||.+|-.|.-- .+++.+ ...|. .|++|...+=-.-.+ +||.+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~--~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV--VTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH--HHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH--HHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 46899997765 5666777666678899999999888532 333343 44443 567766433222222 455553
No 275
>PLN02214 cinnamoyl-CoA reductase
Probab=39.59 E-value=1.7e+02 Score=31.57 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=58.5
Q ss_pred CCCeEEEecCchHHHHHHH-HHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-c----hHHHHHhhhccEEE
Q psy17541 525 NDDVILTYGCSSLVEKILL-TAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-L----SAVSYIMREVSKVI 598 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~-~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-D----SAVsyiM~~VdkVL 598 (717)
.+.+||+.|.+..|-..|. .+.++|. +|+++.-++..........|...+-.++++. | ..+..+|..+|.||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 4567888888776655444 4445564 4554432222111111223322111344432 2 45667788889888
Q ss_pred EceeeEecCC---CeecccchHHHHHHHHhCCCcEEec
Q psy17541 599 IGAHALLSNG---AVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 599 LGAdaVlaNG---~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
--|-.+..+- .-.|-.||..+.-+|+.+++.-+|.
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~ 124 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVI 124 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 7774332211 1136779999998999889864443
No 276
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=39.56 E-value=4e+02 Score=30.17 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCC--CCchhHHHHHHHHHhCCCc
Q psy17541 501 ATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDG--SPWYEGKEMLRRLVKHQVD 578 (717)
Q Consensus 501 defI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvES--RP~~EGr~lA~~L~~~GI~ 578 (717)
+.|++++.......+-.|. ++. | .+..+|+...+..+..-+.+-|...-.+++-. +++.+ .....|...|+.
T Consensus 259 e~~~~~e~~~~~~~ld~~~--~l~-g-kv~v~g~~~~~~~la~~L~elGmevv~~~t~~~~~~~~~--~~~~~l~~~~~~ 332 (416)
T cd01980 259 RKVANEEKAAAKGAIRAFS--PIK-G-RVLVSGYEGNELLVARLLIESGAEVPYVSTSIPKTSLSA--PDYEWLSALGVE 332 (416)
T ss_pred HHHHHHHHHHHHHHHhhHH--hhC-c-eEEEECCCchhHHHHHHHHHcCCEEEEEecCCCChhhhH--HHHHHHHhcCCc
Confidence 3455555555555554442 455 6 67778888777776666777787655555432 33332 333445555654
Q ss_pred EEEEcchH-HHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 579 CSYVLLSA-VSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 579 vTyI~DSA-VsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
+.+-.|-. .-..+. ++|.+| .| +-....|++.+||++-+.-
T Consensus 333 v~~~~~~~~~~~~~~~~~pDl~I-------g~---------s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 333 VRYRKSLEDDIAAVEEYRPDLAI-------GT---------TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cccCCCHHHHHHHHhhcCCCEEE-------eC---------ChhhHHHHHhCCCEEEecC
Confidence 43322211 122222 345443 33 2245689999999987654
No 277
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=39.40 E-value=2.5e+02 Score=28.60 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=65.2
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCc--------------hhHH----HHHHHHHhCC
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPW--------------YEGK----EMLRRLVKHQ 576 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~--------------~EGr----~lA~~L~~~G 576 (717)
++..+.++|.+ ..||..|.+.+-..++......|.. ++.++|.... .-|+ .++++|.+..
T Consensus 11 ~G~e~Q~~L~~-s~VlIiG~gglG~evak~La~~GVg-~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN 88 (197)
T cd01492 11 WGLEAQKRLRS-ARILLIGLKGLGAEIAKNLVLSGIG-SLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN 88 (197)
T ss_pred hCHHHHHHHHh-CcEEEEcCCHHHHHHHHHHHHcCCC-EEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC
Confidence 55666777765 6788889988777777777777854 3444442221 1132 3466677655
Q ss_pred --CcEEEEcc---hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 577 --VDCSYVLL---SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 577 --I~vTyI~D---SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+.+..+.. ...-.++.++|.||...+.+ ---..+.-.|+.+++|++.+.
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~---------~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 89 PRVKVSVDTDDISEKPEEFFSQFDVVVATELSR---------AELVKINELCRKLGVKFYATG 142 (197)
T ss_pred CCCEEEEEecCccccHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEE
Confidence 33333221 11334567888888765432 122456678899999996653
No 278
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=39.34 E-value=3.5e+02 Score=30.14 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=51.9
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcch---HHHHHhh-hccEEEEce
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIGA 601 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLGA 601 (717)
.|++-+-+..+..+| .+...|. +|++ +.|.+.|. .+...+...||+++++... .+...+. +...|++-.
T Consensus 68 al~~~SG~~Al~~~l-~~l~pGd--~Vi~--~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~les 142 (380)
T PRK06176 68 GFAFASGLAGIHAVF-SLFQSGD--HVLL--GDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLET 142 (380)
T ss_pred EEEECCHHHHHHHHH-HHcCCCC--EEEE--cCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEEC
Confidence 444443344554333 4544453 4555 34666553 3344567789998877532 3444443 455555511
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
-.-..|.+.. --.|+-+|++++++|+|
T Consensus 143 -P~Nptg~~~d---i~~I~~la~~~gi~viv 169 (380)
T PRK06176 143 -PSNPLLKITD---LAQCASVAKDHGLLTIV 169 (380)
T ss_pred -CCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 1111233332 34688889999998887
No 279
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=39.32 E-value=70 Score=31.25 Aligned_cols=99 Identities=18% Similarity=0.094 Sum_probs=62.9
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcee
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAH 602 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAd 602 (717)
+..|+.|...||=.- ++... . .+..+|+|+|=.|...|.. ..++ .+....++++++|.||+=+.
T Consensus 8 ~~~~~~V~~VG~f~P---~~~~l-~-~~~~~v~v~d~~~~~~~~~------~~~~-----~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQP---LVEKL-K-ERGAEVRVFDLNPDNIGEE------PGDV-----PDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTTSEEEEES--HC---CHHHH-C-CCCSEEEEEESSGGG--SS------CT-E-----EGGGHHHHGGG-SEEEEECH
T ss_pred hcCCCEEEEEcCcHH---HHHHH-h-cCCCCEEEEECCCCCCCCC------CCcC-----CHHHHHHHHccCCEEEEEee
Confidence 668899999997321 22222 1 3667999999999765430 0111 88899999999999998776
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCcEEecccCCcccccccC
Q psy17541 603 ALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQT 645 (717)
Q Consensus 603 aVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~rv~~ 645 (717)
+|. || |..--|.....+.++++..+|--+.+....
T Consensus 72 Tlv-N~-------Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~ 106 (147)
T PF04016_consen 72 TLV-NG-------TIDDILELARNAREVILYGPSAPLHPEALF 106 (147)
T ss_dssp HCC-TT-------THHHHHHHTTTSSEEEEESCCGGS-GGGGC
T ss_pred eee-cC-------CHHHHHHhCccCCeEEEEecCchhhHHHHH
Confidence 654 44 333222222248999999999988886543
No 280
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=39.32 E-value=85 Score=33.09 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=49.1
Q ss_pred CeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEE-cchHHHHHhhhccEEEEceeeEecCCCeeccc-chHHHHHHHHhCC
Q psy17541 550 TKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYV-LLSAVSYIMREVSKVIIGAHALLSNGAVMSRA-GTAQVSLVARAFN 627 (717)
Q Consensus 550 k~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI-~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKi-GT~~VALaAK~~~ 627 (717)
...+++|+-..|..- .+ ..||....- ..-.+-..+.+.|.||+|...++.+..-.... --+.+..+|+.+|
T Consensus 27 ~~~~~~v~s~~p~~~----~~---~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~ 99 (298)
T TIGR03609 27 PGVEPTVLSNDPAET----AK---LYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFG 99 (298)
T ss_pred CCCeEEEecCChHHH----Hh---hcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcC
Confidence 345566665555432 22 236654322 22355566779999999998888865422111 1124667889999
Q ss_pred CcEEecccCC
Q psy17541 628 VPVLAACETH 637 (717)
Q Consensus 628 VPVyV~cEty 637 (717)
+|+++++-++
T Consensus 100 k~~~~~g~gi 109 (298)
T TIGR03609 100 KPVILWGQGI 109 (298)
T ss_pred CCEEEEeccc
Confidence 9999987654
No 281
>PRK00942 acetylglutamate kinase; Provisional
Probab=39.27 E-value=1.7e+02 Score=31.09 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=62.4
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeE--EEEcCCC--Cchh----H---HHHHHHHHhCCCcEEEEc------------
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFR--VIIVDGS--PWYE----G---KEMLRRLVKHQVDCSYVL------------ 583 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~Fr--VIVvESR--P~~E----G---r~lA~~L~~~GI~vTyI~------------ 583 (717)
.+||+||.++.+...+...-. ...+. +.+++.. +..+ | ..+...|.+.|++..-+.
T Consensus 57 ~vVlVhGgg~~~~~~~~~~g~-~~~~~~g~~~t~~~~l~~~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~ 135 (283)
T PRK00942 57 NPVVVHGGGPQIDELLKKLGI-ESEFVNGLRVTDAETMEVVEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKL 135 (283)
T ss_pred CEEEEeCChHHHHHHHHHCCC-CcEeeCCEecCCHHHHHHHHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEEC
Confidence 589999999987776654311 11111 2222211 1110 2 246677888888755444
Q ss_pred ----------------chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 584 ----------------LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 584 ----------------DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
-..+..+|..-..+++-.=++..+|.+.+--+=...+.+|...+..-+++
T Consensus 136 ~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~ 201 (283)
T PRK00942 136 EEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLIL 201 (283)
T ss_pred CCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEE
Confidence 13344445554556666545556788877767777778999999885544
No 282
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=39.23 E-value=75 Score=34.58 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeEe
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALL 605 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaVl 605 (717)
.||.+|.+..-..++..|.+. .++|++++..|..-|..++. .-+-..+....++..+.. ++|.|+.+.+.+.
T Consensus 1 kililG~g~~~~~l~~aa~~~--G~~v~~~d~~~~~~~~~~ad----~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v~ 74 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAH----RSYVINMLDGDALRAVIEREKPDYIVPEIEAIA 74 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCchhhhCc----eEEEcCCCCHHHHHHHHHHhCCCEEEeccCccC
Confidence 488999888777777777765 46899999998876654332 111111111234444554 5888888876654
No 283
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=39.21 E-value=4.7e+02 Score=30.29 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCC
Q psy17541 498 EVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQV 577 (717)
Q Consensus 498 e~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI 577 (717)
+..+.||.++...+.+.|..+ ..++ .|..|..++.+..+..+..-+.+.|....++++......+=+. ++.|...
T Consensus 298 ~~~e~~i~~e~~~~~~~l~~~-~~~l-~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~-l~~~~~~-- 372 (475)
T PRK14478 298 ERTEALIAEEEAKAWAALEPY-RPRL-EGKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKER-IKELMGP-- 372 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHh-CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHH-HHHHcCC--
Confidence 344455544444444555443 3344 5677777877766566666566678777666666543322222 3333222
Q ss_pred cEEEEcchH---HHHHhhh--ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 578 DCSYVLLSA---VSYIMRE--VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 578 ~vTyI~DSA---VsyiM~~--VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
.+.++.|.. +..++.+ +|++|-| ..-.-+|+..+||++..
T Consensus 373 ~~~v~~d~~~~e~~~~i~~~~pDliig~----------------s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 373 DAHMIDDANPRELYKMLKEAKADIMLSG----------------GRSQFIALKAGMPWLDI 417 (475)
T ss_pred CcEEEeCCCHHHHHHHHhhcCCCEEEec----------------CchhhhhhhcCCCEEEc
Confidence 344555532 3333433 4544433 11236788899999844
No 284
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=39.21 E-value=4.9e+02 Score=29.59 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhcc---CCCeEEEecCchHHHHHHHHH---HHcCCeeEEEEcCCCCchhHH-HHHHHHHh-CCCcE
Q psy17541 508 VDMAGNAICMFFHNKLA---NDDVILTYGCSSLVEKILLTA---HEKGTKFRVIIVDGSPWYEGK-EMLRRLVK-HQVDC 579 (717)
Q Consensus 508 I~~A~e~Ia~~A~e~I~---dGdvILTyg~SStV~~vL~~A---~e~Gk~FrVIVvESRP~~EGr-~lA~~L~~-~GI~v 579 (717)
++.+++.++. +|. ..++|+|-|-+..+..++... +..| -+|++.+-. +..- .--.+|.+ .|+.+
T Consensus 68 ~e~aRe~va~----~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~g--deIv~s~~E--H~sn~~pw~~~~~~~Ga~v 139 (405)
T COG0520 68 YEAAREAVAR----FLNADSSDEIVFTRGTTEALNLVARGLGRSLKPG--DEIVVSDLE--HHSNIVPWQELAKRTGAKV 139 (405)
T ss_pred HHHHHHHHHH----HhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCC--CEEEEccCc--chhhHHHHHHHHHhcCcEE
Confidence 3445666554 443 356888888887755555443 3344 577776643 2221 22234444 59999
Q ss_pred EEEcch--------HHHHHhhh-ccEEEEceeeEecCCCeecccch----HHHHHHHHhCCCcEEe
Q psy17541 580 SYVLLS--------AVSYIMRE-VSKVIIGAHALLSNGAVMSRAGT----AQVSLVARAFNVPVLA 632 (717)
Q Consensus 580 TyI~DS--------AVsyiM~~-VdkVLLGAdaVlaNG~VvNKiGT----~~VALaAK~~~VPVyV 632 (717)
++|+.. .+-.++.+ ...|.+. .+.|..|+ -.|+-+||.+|+.|+|
T Consensus 140 ~~i~~~~~g~~~~~~~~~~i~~~Tklvais--------~vSn~tG~~~pv~~I~~la~~~ga~v~V 197 (405)
T COG0520 140 RVIPLDDDGLLDLDALEKLITPKTKLVALS--------HVSNVTGTVNPVKEIAELAHEHGALVLV 197 (405)
T ss_pred EEEecCCCCCcCHHHHHHhcCCCceEEEEE--------CccccccccchHHHHHHHHHHcCCEEEE
Confidence 999832 12222333 3444333 35555555 3588999999988888
No 285
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=39.15 E-value=39 Score=35.81 Aligned_cols=40 Identities=23% Similarity=0.063 Sum_probs=31.1
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHH
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEM 568 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~l 568 (717)
+||..|.+.-+ .+++.+++.|..++|+++|..|...|...
T Consensus 3 ~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~ 42 (326)
T PRK12767 3 NILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYF 42 (326)
T ss_pred eEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHh
Confidence 67888877665 77777777776799999999998877643
No 286
>PLN00175 aminotransferase family protein; Provisional
Probab=38.97 E-value=3.3e+02 Score=30.43 Aligned_cols=99 Identities=18% Similarity=0.350 Sum_probs=51.3
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---------HHHHHh-hhccE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---------AVSYIM-REVSK 596 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---------AVsyiM-~~Vdk 596 (717)
.+++|.|.+..+..++......|. .|+|.+ |.+.+... .+...|+.+.++... .+-..+ +++..
T Consensus 117 ~I~vt~G~~~al~~~~~~l~~~gd--~Vlv~~--P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~ 190 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGLINPGD--EVILFA--PFYDSYEA--TLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRA 190 (413)
T ss_pred CEEEeCCHHHHHHHHHHHhCCCCC--EEEEeC--CCchhHHH--HHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceE
Confidence 577888887776555554433443 566654 77766433 344578888777532 121111 23333
Q ss_pred EEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 597 VIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
|++. .-=-..|.++++-=-..++-+|+.|++.|++
T Consensus 191 i~i~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 191 ILIN-TPHNPTGKMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred EEec-CCCCCCCcCCCHHHHHHHHHHHHHcCcEEEE
Confidence 4332 1111223333322223477788888875553
No 287
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=38.96 E-value=2.8e+02 Score=31.95 Aligned_cols=109 Identities=20% Similarity=0.120 Sum_probs=65.1
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCc--------------hhHH----HHHHHHHhCC
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPW--------------YEGK----EMLRRLVKHQ 576 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~--------------~EGr----~lA~~L~~~G 576 (717)
++..+...|.+ ..||..|.+.+-..++......|.. ++.++|.... .-|+ .+++.|.+.+
T Consensus 10 wG~~gQ~~L~~-s~VlliG~gglGsEilKNLvL~GIg-~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLN 87 (425)
T cd01493 10 WGEHGQAALES-AHVCLLNATATGTEILKNLVLPGIG-SFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELN 87 (425)
T ss_pred hHHHHHHHHhh-CeEEEEcCcHHHHHHHHHHHHcCCC-eEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHC
Confidence 66677777754 6788889998888888888888864 3333332221 1132 3455566654
Q ss_pred --CcEEEEcchH------HHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 577 --VDCSYVLLSA------VSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 577 --I~vTyI~DSA------VsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+.+.++..+- ...+....|.||..-+. .-=-..+.-.|+.++|||+++.
T Consensus 88 p~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~---------~~~~~~L~~~c~~~~iPlI~~~ 144 (425)
T cd01493 88 PDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLP---------ESTLLRLADVLWSANIPLLYVR 144 (425)
T ss_pred CCCEEEEEecccchhhhhHHHHhcCCCEEEECCCC---------HHHHHHHHHHHHHcCCCEEEEe
Confidence 5556665322 23455677877643221 1111335667889999998754
No 288
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=38.93 E-value=49 Score=30.76 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCcEEEEcchH--HHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSA--VSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSA--VsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
+.++..|.+.|+.+..+.... +..+.. ++..|+|..| +.--.-..-..-.+-.+.+++||+++.+..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 467788888899988887544 555543 6889998887 111111122233355666899999999965
No 289
>PRK13936 phosphoheptose isomerase; Provisional
Probab=38.62 E-value=4.3e+02 Score=26.73 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=26.8
Q ss_pred HhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 590 IMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 590 iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
.+..=|.+|+ |...|. .-=+..++-.|+..|+|++.++..
T Consensus 108 ~~~~~Dv~i~----iS~sG~---t~~~~~~~~~ak~~g~~iI~IT~~ 147 (197)
T PRK13936 108 LGQPGDVLLA----ISTSGN---SANVIQAIQAAHEREMHVVALTGR 147 (197)
T ss_pred hCCCCCEEEE----EeCCCC---cHHHHHHHHHHHHCCCeEEEEECC
Confidence 3445666664 444553 222566788999999999998863
No 290
>PRK06290 aspartate aminotransferase; Provisional
Probab=38.62 E-value=2.2e+02 Score=31.82 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=53.9
Q ss_pred ccCC-CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH-------HHHHh---
Q psy17541 523 LAND-DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA-------VSYIM--- 591 (717)
Q Consensus 523 I~dG-dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA-------VsyiM--- 591 (717)
+... ++|+|.|....+..++......|. .|+| ++ |.+.+...+ +...|+++..+.... +-.+.
T Consensus 103 ~~~~~~I~it~Gs~~al~~~~~~~~~~gd--~Vlv-~~-P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~ 176 (410)
T PRK06290 103 IDPVTEVIHSIGSKPALAMLPSCFINPGD--VTLM-TV-PGYPVTGTH--TKYYGGEVYNLPLLEENNFLPDLDSIPKDI 176 (410)
T ss_pred CCCcceEEEccCHHHHHHHHHHHhCCCCC--EEEE-eC-CCCccHHHH--HHHcCCEEEEEecCCCcCCcCCHHHHHHhh
Confidence 4444 688998888876555544433343 3444 33 777664332 334688777765321 11111
Q ss_pred -hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 592 -REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 592 -~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
.++..|+|- .-=-..|.++++-=-..|+-+|+.|++.|+ +=|.|
T Consensus 177 ~~~~k~i~l~-nP~NPTG~v~s~e~l~~l~~la~~~~~~iI-~DEaY 221 (410)
T PRK06290 177 KEKAKLLYLN-YPNNPTGAVATKEFYEEVVDFAKENNIIVV-QDAAY 221 (410)
T ss_pred cccceEEEEE-CCCCCCCcCCCHHHHHHHHHHHHHcCeEEE-Eecch
Confidence 134444432 001122444433333566677888988443 33444
No 291
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=38.57 E-value=2.6e+02 Score=28.13 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=53.9
Q ss_pred eEEEecCch------HHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHHHHHHhCCCc--EEEEc-chHHHHHhhhccEE
Q psy17541 528 VILTYGCSS------LVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EMLRRLVKHQVD--CSYVL-LSAVSYIMREVSKV 597 (717)
Q Consensus 528 vILTyg~SS------tV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA~~L~~~GI~--vTyI~-DSAVsyiM~~VdkV 597 (717)
+|+..|+-. .+..++....+.+..++++++-..+..+-. .+.. ...|+. +.++. ..-+..+|..+|.+
T Consensus 195 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~--~~~~~~~~v~~~g~~~~~~~~~~~adi~ 272 (365)
T cd03807 195 LIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLAL--KELGLEDKVILLGERSDVPALLNALDVF 272 (365)
T ss_pred EEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHH--HhcCCCceEEEccccccHHHHHHhCCEE
Confidence 556666532 234444444445667888887655443322 2222 245553 33332 34577889999999
Q ss_pred EEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 598 IIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 598 LLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
|+.... . |.....+=|-.+|+||++.
T Consensus 273 v~ps~~---e-------~~~~~~~Ea~a~g~PvI~~ 298 (365)
T cd03807 273 VLSSLS---E-------GFPNVLLEAMACGLPVVAT 298 (365)
T ss_pred EeCCcc---c-------cCCcHHHHHHhcCCCEEEc
Confidence 887543 2 2233456777889999883
No 292
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=38.50 E-value=1.6e+02 Score=31.05 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=63.8
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
.|-.||+.|-+.+..+=+....+.|-.++||-.+-.|..+ .|.+.| .++++.-.--...+..+++||...|
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~------~l~~~~-~i~~~~r~~~~~dl~g~~LViaATd-- 94 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL------DLKKYG-NLKLIKGNYDKEFIKDKHLIVIATD-- 94 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH------HHHhCC-CEEEEeCCCChHHhCCCcEEEECCC--
Confidence 4678999999998877777777788889999777655543 244444 2455543322333456777776654
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
++.=-..|+..|++.+++|.++..
T Consensus 95 -------D~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 95 -------DEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred -------CHHHHHHHHHHHHHcCCeEEEcCC
Confidence 222235788899999999998765
No 293
>PLN02509 cystathionine beta-lyase
Probab=38.47 E-value=2.9e+02 Score=32.10 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=49.0
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHH-HHHHhCCCcEEEEcchHHHHH---hh-hccEEEEce
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EML-RRLVKHQVDCSYVLLSAVSYI---MR-EVSKVIIGA 601 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA-~~L~~~GI~vTyI~DSAVsyi---M~-~VdkVLLGA 601 (717)
.|++-|-..++ .++..+...|. +|++ +.|.+.|- .++ ..+...|+.+.++....+..+ +. +...|++ .
T Consensus 151 ai~~~SG~aAi-~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~l-e 224 (464)
T PLN02509 151 AFCFTSGMAAL-SAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL-E 224 (464)
T ss_pred EEEeCcHHHHH-HHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEE-E
Confidence 34433333333 44444544554 4555 45677663 333 446678999888754333222 22 2222322 1
Q ss_pred eeEecCCCeecccchH----HHHHHHHhCCCcEEe
Q psy17541 602 HALLSNGAVMSRAGTA----QVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVlaNG~VvNKiGT~----~VALaAK~~~VPVyV 632 (717)
.+.|..|.. .|+-+|+++|++|+|
T Consensus 225 -------sPsNPtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 225 -------SPTNPRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 244555543 366778999999887
No 294
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=38.35 E-value=3.8e+02 Score=28.16 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=44.8
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---HHHHHhhhc----cEEEE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---AVSYIMREV----SKVII 599 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---AVsyiM~~V----dkVLL 599 (717)
+.|++.+-+..+..+|..+...|. .|++ + .|.+.....+ +...|+++.++... .+-..+... .++++
T Consensus 78 ~~i~~~~G~~~~~~~l~~~~~~gd--~v~~-~-~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 78 AALLFSSGYLANVGVISALVGKGD--LILS-D-ALNHASLIDG--CRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred CEEEECchHHHHHHHHHHhCCCCC--EEEE-E-ccccHHHHHH--HHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEE
Confidence 344443334444545544433332 3443 3 3555443333 33467777776532 233334321 23333
Q ss_pred ceeeEecCCCeecccc----hHHHHHHHHhCCCcEEe
Q psy17541 600 GAHALLSNGAVMSRAG----TAQVSLVARAFNVPVLA 632 (717)
Q Consensus 600 GAdaVlaNG~VvNKiG----T~~VALaAK~~~VPVyV 632 (717)
-+.+.|..| -..|+-+|+.++++|++
T Consensus 152 -------~~~~~~~~G~~~~~~~i~~l~~~~~~~li~ 181 (360)
T TIGR00858 152 -------TDGVFSMDGDIAPLPQLVALAERYGAWLMV 181 (360)
T ss_pred -------EeCCccCCCCCcCHHHHHHHHHHcCcEEEE
Confidence 123344444 24577788999987775
No 295
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=38.27 E-value=4e+02 Score=29.26 Aligned_cols=100 Identities=14% Similarity=0.239 Sum_probs=52.0
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcchH---HHHHhh-hccEEEEce
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLSA---VSYIMR-EVSKVIIGA 601 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DSA---VsyiM~-~VdkVLLGA 601 (717)
.|++-|-+..+.. +..+...|. +|++. .|.+.|. .+...+...|+.+.++...- +-..+. +...|++-
T Consensus 70 ~~~~~sG~~ai~~-~~~ll~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le- 143 (366)
T PRK08247 70 GFACSSGMAAIQL-VMSLFRSGD--ELIVS--SDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIE- 143 (366)
T ss_pred EEEEcCHHHHHHH-HHHHhCCCC--EEEEe--cCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEE-
Confidence 4555554555443 334444453 55554 3666653 23345667899998886432 333332 34444441
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 602 HALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 602 daVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
..|.-.....--..|+-+|+.++++++| =++|
T Consensus 144 ---~P~NP~~~~~dl~~I~~la~~~g~~lIv-D~t~ 175 (366)
T PRK08247 144 ---TPTNPLMQETDIAAIAKIAKKHGLLLIV-DNTF 175 (366)
T ss_pred ---CCCCCCCcHHHHHHHHHHHHHcCCEEEE-ECCC
Confidence 1221122222334577888999987765 3444
No 296
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=38.25 E-value=1.6e+02 Score=30.64 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=44.0
Q ss_pred eEEEecCchHHHHHHHHHHHcCC-eeE-EEEcCCCCchhHHHHHHHHHhCCCcEEEEc----------chHHHHHhh--h
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGT-KFR-VIIVDGSPWYEGKEMLRRLVKHQVDCSYVL----------LSAVSYIMR--E 593 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk-~Fr-VIVvESRP~~EGr~lA~~L~~~GI~vTyI~----------DSAVsyiM~--~ 593 (717)
.||.-|..+..+. |..+.+.|. +.+ ++|+-++|...+...|+ ++||++..+. +..+-..|. +
T Consensus 3 ~vl~Sg~Gsn~~a-l~~~~~~~~l~~~i~~visn~~~~~~~~~A~---~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (207)
T PLN02331 3 AVFVSGGGSNFRA-IHDACLDGRVNGDVVVVVTNKPGCGGAEYAR---ENGIPVLVYPKTKGEPDGLSPDELVDALRGAG 78 (207)
T ss_pred EEEEeCCChhHHH-HHHHHHcCCCCeEEEEEEEeCCCChHHHHHH---HhCCCEEEeccccCCCcccchHHHHHHHHhcC
Confidence 4667777777555 455555553 444 44666778887765444 4599997654 234444454 5
Q ss_pred ccEEEE-ceeeE
Q psy17541 594 VSKVII-GAHAL 604 (717)
Q Consensus 594 VdkVLL-GAdaV 604 (717)
+|.+|+ |-..|
T Consensus 79 ~Dliv~agy~~i 90 (207)
T PLN02331 79 VDFVLLAGYLKL 90 (207)
T ss_pred CCEEEEeCcchh
Confidence 888887 43343
No 297
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=38.25 E-value=1.6e+02 Score=31.06 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=64.6
Q ss_pred HHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCC---------CCc-----hhH----HHHHHHHHhCC--
Q psy17541 517 MFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDG---------SPW-----YEG----KEMLRRLVKHQ-- 576 (717)
Q Consensus 517 ~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvES---------RP~-----~EG----r~lA~~L~~~G-- 576 (717)
..+.+.|.+ ..||..|.+.+=-.++......|.. +++++|- |-. .-| ..++++|.+.+
T Consensus 3 ~e~~~~L~~-~~VlVvG~GGvGs~va~~Lar~GVg-~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 3 EEGLEKLRN-AHVAVVGLGGVGSWAAEALARSGVG-KLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred HHHHHHHhC-CCEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 344555644 6899999987655555555555653 4444442 211 113 24677777755
Q ss_pred CcEEEEc-----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 577 VDCSYVL-----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 577 I~vTyI~-----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
+.++.+. ++.-..+..+.|.||...|.+-. -..+.-.|+.+++||+.+....
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~---------k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRA---------KVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHH---------HHHHHHHHHHhCCCEEEEeCCc
Confidence 4444443 23333333468888877665432 2456677899999999875544
No 298
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=38.15 E-value=32 Score=36.35 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=23.0
Q ss_pred HhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 590 IMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 590 iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
+-.++|.++++.|..+. +. ...+...+.++++|||...+.+
T Consensus 181 l~~~~da~~~~~~~~~~-----~~--~~~i~~~~~~~~iPv~~~~~~~ 221 (294)
T PF04392_consen 181 LAEKVDALYLLPDNLVD-----SN--FEAILQLANEAKIPVFGSSDFY 221 (294)
T ss_dssp HCTT-SEEEE-S-HHHH-----HT--HHHHHHHCCCTT--EEESSHHH
T ss_pred hhccCCEEEEECCcchH-----hH--HHHHHHHHHhcCCCEEECCHHH
Confidence 34578888887665433 22 2227778889999999866533
No 299
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=38.10 E-value=6.8e+02 Score=29.55 Aligned_cols=84 Identities=10% Similarity=0.175 Sum_probs=52.2
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc--
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIG-- 600 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLG-- 600 (717)
.-.|.+|+++|++.+=..+...++..| .+|+|+|..|...- .+ ...|+.+. . +..+++.+|.|++-
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~--~A---~~~G~~~~--~---leell~~ADIVI~atG 318 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICAL--QA---AMEGYQVV--T---LEDVVETADIFVTATG 318 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHH--HH---HhcCceec--c---HHHHHhcCCEEEECCC
Confidence 346899999999987666666776444 47999988876421 11 22465432 1 33456788888763
Q ss_pred eeeEe--------cCCCeecccchHH
Q psy17541 601 AHALL--------SNGAVMSRAGTAQ 618 (717)
Q Consensus 601 AdaVl--------aNG~VvNKiGT~~ 618 (717)
...++ .+|+++--+|-..
T Consensus 319 t~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 319 NKDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred cccccCHHHHhccCCCcEEEEcCCCc
Confidence 22232 3666666666654
No 300
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=38.01 E-value=2.9e+02 Score=29.83 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=44.4
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc---chHHHHHhhh----ccEEEEc
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL---LSAVSYIMRE----VSKVIIG 600 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~---DSAVsyiM~~----VdkVLLG 600 (717)
+++|-| +.....++..+...|. .|+ ++ .|.+.+......+ .|+++..+. ...+-..+.. -.++|+
T Consensus 97 i~~~sG-~~a~~~a~~~~~~~gd--~vi-~~-~~~~~~~~~~~~~--~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~- 168 (385)
T TIGR01825 97 LVFQSG-FNTNQGVLSALLRKGD--IVL-SD-ELNHASIIDGLRL--TKATKKIYKHADMDDLDRVLRENPSYGKKLIV- 168 (385)
T ss_pred EEECcH-HHHHHHHHHHhCCCCC--EEE-EE-ccccHHHHHHHHh--cCCceEEeCCCCHHHHHHHHHhhccCCCeEEE-
Confidence 444444 5555555554444443 344 44 3666654333333 566655443 1223333332 133333
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
...+....+.+.. -..|+-+|+.|+++|++
T Consensus 169 ~~~v~~~tG~~~~--~~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 169 TDGVFSMDGDVAP--LPEIVELAERYGAVTYV 198 (385)
T ss_pred EecCCcCCCCccC--HHHHHHHHHHhCCEEEE
Confidence 1122222222222 25577788999987775
No 301
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=37.95 E-value=1.2e+02 Score=31.97 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=47.7
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEE-EcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEec
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVI-IVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLS 606 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVI-VvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVla 606 (717)
.|..+|++..+-..+..+......++|. ++|..|...... ...|+.+ . ..+..++.++|.|+.-+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----~~~~i~~--~--~dl~~ll~~~DvVid~t----- 68 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----GALGVAI--T--DDLEAVLADADVLIDFT----- 68 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----CCCCccc--c--CCHHHhccCCCEEEECC-----
Confidence 5788887333333333443333456655 566665433221 2234432 1 23444455667665322
Q ss_pred CCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 607 NGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 607 NG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
..-+.+.++..|-.+|+||++.
T Consensus 69 -----~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 69 -----TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -----CHHHHHHHHHHHHHcCCCEEEE
Confidence 4455688888888999999865
No 302
>PRK06141 ornithine cyclodeaminase; Validated
Probab=37.83 E-value=2.5e+02 Score=30.49 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHHhhc--cCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhcc
Q psy17541 518 FFHNKL--ANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVS 595 (717)
Q Consensus 518 ~A~e~I--~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~Vd 595 (717)
.+.+++ .+..+|+.+|.+..-...+........-.+|+|.. |-......++.++.+.|+++.... .+.-.+.++|
T Consensus 115 la~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~-Rs~~~a~~~a~~~~~~g~~~~~~~--~~~~av~~aD 191 (314)
T PRK06141 115 LAASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWG-RDPAKAEALAAELRAQGFDAEVVT--DLEAAVRQAD 191 (314)
T ss_pred HHHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc-CCHHHHHHHHHHHHhcCCceEEeC--CHHHHHhcCC
Confidence 344444 25578999998876555554333222223566654 444445678888877787766542 3344567899
Q ss_pred EEEEceee--------EecCCCeecccchH
Q psy17541 596 KVIIGAHA--------LLSNGAVMSRAGTA 617 (717)
Q Consensus 596 kVLLGAda--------VlaNG~VvNKiGT~ 617 (717)
.|+....+ .+..|.+++-+|++
T Consensus 192 IVi~aT~s~~pvl~~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 192 IISCATLSTEPLVRGEWLKPGTHLDLVGNF 221 (314)
T ss_pred EEEEeeCCCCCEecHHHcCCCCEEEeeCCC
Confidence 88663321 23457777777765
No 303
>PRK05414 urocanate hydratase; Provisional
Probab=37.76 E-value=1.4e+02 Score=35.30 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHhcC-C-------------------CCCCHHHHHHHHHHHHHH
Q psy17541 444 YSRGFEERLGPAMSYLNKCRPHSVS-MLNAVKHFKSHLTQL-P-------------------NDITDTQARLRLKEVIAT 502 (717)
Q Consensus 444 lsr~L~~~Lk~ai~~L~~aRPtsVS-mgNAIR~Lk~~I~~l-~-------------------~~~s~ee~Ke~Lie~Ide 502 (717)
...+|.+.|..+-+....-+|.|++ +||+..-+-+.+.+- . .+.+++|..+...+.-+.
T Consensus 215 ~~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr~~dp~~ 294 (556)
T PRK05414 215 KADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELRAEDPEE 294 (556)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3456777777777777888999988 689988777766542 1 256889999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHh---hccCCCeEEEecCc
Q psy17541 503 YIHEQVDMAGNAICMFFHN---KLANDDVILTYGCS 535 (717)
Q Consensus 503 fI~ErI~~A~e~Ia~~A~e---~I~dGdvILTyg~S 535 (717)
|.+ .+.+.|+.|... +-..|..+.=||++
T Consensus 295 ~~~----~~~~Sm~rhv~Am~~~~~~G~~~fDYGN~ 326 (556)
T PRK05414 295 FVK----AAKASMARHVEAMLAFQARGAYVFDYGNN 326 (556)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 873 356777776643 44578888888764
No 304
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=37.57 E-value=1.7e+02 Score=29.84 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=40.6
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEE-EcCCCCchhHHHHHHHHHhCCCcEEEEc----------chHHHHHhh--hc
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVI-IVDGSPWYEGKEMLRRLVKHQVDCSYVL----------LSAVSYIMR--EV 594 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVI-VvESRP~~EGr~lA~~L~~~GI~vTyI~----------DSAVsyiM~--~V 594 (717)
.||.-|.++....+|....+.+..+.|. |+-.||...+. ....+.||++.++. +..+...+. .+
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~---~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL---ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHH---HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 4666677887666666555444445544 33455655543 44566799988755 223444444 47
Q ss_pred cEEEE
Q psy17541 595 SKVII 599 (717)
Q Consensus 595 dkVLL 599 (717)
|.+|+
T Consensus 81 D~iv~ 85 (190)
T TIGR00639 81 DLVVL 85 (190)
T ss_pred CEEEE
Confidence 77765
No 305
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=37.49 E-value=1.4e+02 Score=30.49 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEc-chHHHHHhhh
Q psy17541 538 VEKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVL-LSAVSYIMRE 593 (717)
Q Consensus 538 V~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~-DSAVsyiM~~ 593 (717)
+...+.....+|++ -|+++.+-|.+-| ..+++.|.+.|+++.+|+ .+++.+++..
T Consensus 66 ~~~~i~~~~~~g~~-V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~ 123 (236)
T TIGR01469 66 INRLLVELAREGKK-VVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAY 123 (236)
T ss_pred HHHHHHHHHHCCCe-EEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHH
Confidence 34444444445654 3345778887765 678888888899999998 6777766653
No 306
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=37.32 E-value=2.7e+02 Score=28.42 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=56.8
Q ss_pred CCCeEEEecCch------HHHHHHHHHHHcCCeeEEEEcCCCCchhHHHH---HHHHHhCCC--cEEEE----cchHHHH
Q psy17541 525 NDDVILTYGCSS------LVEKILLTAHEKGTKFRVIIVDGSPWYEGKEM---LRRLVKHQV--DCSYV----LLSAVSY 589 (717)
Q Consensus 525 dGdvILTyg~SS------tV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~l---A~~L~~~GI--~vTyI----~DSAVsy 589 (717)
+.-+|+..|+-. .+..++....+.+..++++++-..+...-... .+.+.+.|+ .++++ ....+..
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~ 263 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPE 263 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHH
Confidence 445677776432 23444444445566788777765432211110 012444454 35543 3567899
Q ss_pred HhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 590 IMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 590 iM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
+|..+|.+++-.. ..+ -|...+.+-|-.+|+||++.
T Consensus 264 ~~~~ad~~v~ps~--~e~------~~~~~~~~Ea~a~G~PvI~~ 299 (366)
T cd03822 264 LFSAADVVVLPYR--SAD------QTQSGVLAYAIGFGKPVIST 299 (366)
T ss_pred HHhhcCEEEeccc--ccc------cccchHHHHHHHcCCCEEec
Confidence 9999999887532 111 23333455678899999874
No 307
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=37.18 E-value=4.2e+02 Score=28.59 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=48.2
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch----------HHHHHhh---
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS----------AVSYIMR--- 592 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS----------AVsyiM~--- 592 (717)
..+++|.|.+..+..+|......|. +|++. +|.+-+.. ..+...|+++.++... .+...+.
T Consensus 60 ~~i~~~~g~t~al~~~l~~~~~~gd--~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 133 (361)
T cd06452 60 DEARVTPGAREGKFAVMHSLCEKGD--WVVVD--GLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK 133 (361)
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCCC--EEEEc--CCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHh
Confidence 3567776666555555544433332 34443 23322221 2356678888777521 1222232
Q ss_pred -----hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -----EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -----~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..|++. +.-...|.+ .. -..++-+|+.++++|+|
T Consensus 134 ~~~~~~~~lv~l~-~p~n~tG~~-~~--~~~i~~~~~~~~~~viv 174 (361)
T cd06452 134 DEFGKPPALALLT-HVDGNYGNL-HD--AKKIAKVCHEYGVPLLL 174 (361)
T ss_pred hccCCCceEEEEE-CCCCCCeee-cc--HHHHHHHHHHcCCeEEE
Confidence 45566663 111112322 22 23566778889988876
No 308
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=37.00 E-value=5.2e+02 Score=28.00 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=47.1
Q ss_pred CeEEEecCchHHHHHHHHHHHc-CCeeEEEEcCCCCchhHHHHHHHHH--hCCCcEEEEcch--------HHHHHh-hhc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEK-GTKFRVIIVDGSPWYEGKEMLRRLV--KHQVDCSYVLLS--------AVSYIM-REV 594 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~-Gk~FrVIVvESRP~~EGr~lA~~L~--~~GI~vTyI~DS--------AVsyiM-~~V 594 (717)
.+++|.+-+..++..+..+... ++.-.|++. .|.+.+...+..+. ..|+.+.++... .+-..+ +++
T Consensus 83 ~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~--~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t 160 (398)
T cd00613 83 NASLQDEATAAAEAAGLAAIRAYHKRNKVLVP--DSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV 160 (398)
T ss_pred ceeccCchHHHHHHHHHHHHhcccCCCEEEEc--CccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe
Confidence 4556654444444444444322 123345553 34444433333332 234666665421 233233 234
Q ss_pred cEEEEceeeEecCCCeecccch-HHHHHHHHhCCCcEEe
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGT-AQVSLVARAFNVPVLA 632 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT-~~VALaAK~~~VPVyV 632 (717)
..|++-. .-..|.+ ..- ..|+-+|+++++.++|
T Consensus 161 ~~viv~~--~~~~G~~---~~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 161 AALMVQY--PNTLGVF---EDLIKEIADIAHSAGALVYV 194 (398)
T ss_pred EEEEEEC--CCCCcee---cchHHHHHHHHHhcCCEEEE
Confidence 3444432 2334544 243 5677788999988887
No 309
>PRK12320 hypothetical protein; Provisional
Probab=36.96 E-value=88 Score=38.21 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=60.2
Q ss_pred eEEEecCchHHHHHHH-HHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEE--EcchHHHHHhhhccEEEEceeeE
Q psy17541 528 VILTYGCSSLVEKILL-TAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSY--VLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 528 vILTyg~SStV~~vL~-~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTy--I~DSAVsyiM~~VdkVLLGAdaV 604 (717)
.||+.|-+..|-.-|. .+.+.| .+|++++..+.. +...++.... +.|..+..++.++|.||-=|...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G--~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG--HTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 5888887766655444 444455 477777754431 1112332211 22344555567788888766433
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
..+..-.|..||..++-+|+.+++.|+.+...
T Consensus 72 ~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 72 TSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred ccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 22223468899999999999999998877654
No 310
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=36.91 E-value=4.4e+02 Score=29.92 Aligned_cols=96 Identities=13% Similarity=0.199 Sum_probs=52.9
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH--HHHHHHHhCCCcEEEEcch---HHHHHhh-hccEEEEce
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK--EMLRRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIGA 601 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr--~lA~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLGA 601 (717)
.|++-+-+..+..+|......|. +|++.+ +.+.|. .+...+...|+.+.++... .+-..+. +...|++
T Consensus 81 al~~~SG~~Ai~~al~all~pGd--~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~v-- 154 (427)
T PRK05994 81 ALAVASGHAAQFLVFHTLLQPGD--EFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFI-- 154 (427)
T ss_pred EEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEE--
Confidence 45554444555555555544453 455543 555553 2334467789999888633 3334443 3444444
Q ss_pred eeEe-cCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 602 HALL-SNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 602 daVl-aNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+.+. ..|.++. -..|+-+|++++++|+|
T Consensus 155 esp~NptG~v~d---l~~I~~la~~~gi~liv 183 (427)
T PRK05994 155 ESIANPGGTVTD---IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 2222 2243332 24677889999998887
No 311
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=36.85 E-value=1.6e+02 Score=34.63 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhc------cCCCeEEE--ecCchHHHHHHHHH-HHcCCe------------------------eEEEEc
Q psy17541 511 AGNAICMFFHNKL------ANDDVILT--YGCSSLVEKILLTA-HEKGTK------------------------FRVIIV 557 (717)
Q Consensus 511 A~e~Ia~~A~e~I------~dGdvILT--yg~SStV~~vL~~A-~e~Gk~------------------------FrVIVv 557 (717)
....|+++++++| .||.++=| =|-|.+|..+|... .+.|.. |.|...
T Consensus 231 ~e~~IA~~vA~lI~~s~~~~DG~tlQ~GiGgip~AV~~~L~~~mkdlGIht~f~~g~iTd~~vdL~e~G~vt~~~dV~~F 310 (492)
T TIGR01584 231 KELLIAKMANDVIVNSGYFKDGFSFQTGTGGAALAVTRFLKEKMIDHNIKASFGLGGITKQMVDLHEEGLIDKLFDVQSF 310 (492)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEccCCHHHHHHHHHHHHHHHhCCCcccccCccccHHHHHHHHCCCcccceeEEEe
Confidence 3467888888887 89999887 36677888888777 433322 111111
Q ss_pred CCCCchhHHHHHHHHHh----CCCcEEEEcchHH-HHHhhhccEEEEceeeEecC----------CCeecccchHHH-HH
Q psy17541 558 DGSPWYEGKEMLRRLVK----HQVDCSYVLLSAV-SYIMREVSKVIIGAHALLSN----------GAVMSRAGTAQV-SL 621 (717)
Q Consensus 558 ESRP~~EGr~lA~~L~~----~GI~vTyI~DSAV-syiM~~VdkVLLGAdaVlaN----------G~VvNKiGT~~V-AL 621 (717)
+ -|- .+.|.+ .-+++.|+.+-.. +.+...-|.+|++|=-|--+ |.+++-+|-..= +.
T Consensus 311 ~-----lGs--~~~i~~Np~~~~~~a~~y~nP~~~~~i~~~~dvsInsAlEVDl~gqVnv~t~s~G~~~sg~GGq~Dfa~ 383 (492)
T TIGR01584 311 D-----LGA--AESIALNPNHQEIDASWYANPANKGAMVNKLDVVILSALEIDTKFNVNVMTGSDGVIRGASGGHQDTAA 383 (492)
T ss_pred e-----cch--HHHHhcCCCeEEeccccccCCCchHHHhhCCCeEEEeeEEEecCCeeeEeecCCCeEEecCchHHHHHh
Confidence 1 010 012211 1245566666444 44555667888888666444 444444444433 23
Q ss_pred HHHhCCCcEEecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCc-
Q psy17541 622 VARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIV- 700 (717)
Q Consensus 622 aAK~~~VPVyV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIl- 700 (717)
-|+. . ++++++. ..+. | .++ +.+ .-=.||-+-|+.||||.|+-
T Consensus 384 GA~~---S-II~~ps~--~Gri------------s-~IV------------~~v-----~~VtTpr~~Vd~VVTEyGIAv 427 (492)
T TIGR01584 384 GAKL---S-IIVAPLV--RGRI------------P-TVV------------EKV-----TTVITPGESIDVLVTEIGIAI 427 (492)
T ss_pred hhcc---e-EEEEEcC--CCCc------------C-eEe------------CCC-----CCEECChhhCCEEEccCEEec
Confidence 3333 2 4455542 1110 0 011 112 12478999999999999998
Q ss_pred CCCChhHHhhcC
Q psy17541 701 PCTSVPVVLRVK 712 (717)
Q Consensus 701 pPsSVpvVLR~k 712 (717)
-|..-.+.=|.+
T Consensus 428 nlrg~~l~eR~~ 439 (492)
T TIGR01584 428 NPKRKDLIEKLS 439 (492)
T ss_pred CCCCCCHHHHHh
Confidence 655444444433
No 312
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=36.80 E-value=1.5e+02 Score=34.95 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHhcC-C-------------------CCCCHHHHHHHHHHHHHH
Q psy17541 444 YSRGFEERLGPAMSYLNKCRPHSVS-MLNAVKHFKSHLTQL-P-------------------NDITDTQARLRLKEVIAT 502 (717)
Q Consensus 444 lsr~L~~~Lk~ai~~L~~aRPtsVS-mgNAIR~Lk~~I~~l-~-------------------~~~s~ee~Ke~Lie~Ide 502 (717)
...+|.+.|..+-+....-+|.|++ +||+..-+-..+++- . .+.++++..+.+.+.-+.
T Consensus 206 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~~ 285 (545)
T TIGR01228 206 QTDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPEA 285 (545)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3456777777777777888999988 689988777766542 1 256889999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHh---hccCCCeEEEecCc
Q psy17541 503 YIHEQVDMAGNAICMFFHN---KLANDDVILTYGCS 535 (717)
Q Consensus 503 fI~ErI~~A~e~Ia~~A~e---~I~dGdvILTyg~S 535 (717)
|. ++ +.+.|+.|... +-..|..+.=||++
T Consensus 286 ~~-~~---~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~ 317 (545)
T TIGR01228 286 YV-KA---AKQSMAKHVRAMLAFQKQGSVTFDYGNN 317 (545)
T ss_pred HH-HH---HHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 87 33 66777776644 44578888888764
No 313
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=36.76 E-value=88 Score=29.71 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=24.1
Q ss_pred HHHHHHhh--ccCCCeEEEecC---chHHHHHHHHHHHcCCe
Q psy17541 515 ICMFFHNK--LANDDVILTYGC---SSLVEKILLTAHEKGTK 551 (717)
Q Consensus 515 Ia~~A~e~--I~dGdvILTyg~---SStV~~vL~~A~e~Gk~ 551 (717)
.++..... ++.||+++.++. |..|..++..|++.|..
T Consensus 91 ~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 91 FARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMK 132 (138)
T ss_dssp HHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Confidence 33444444 889999999855 56789999999887753
No 314
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=36.72 E-value=1.7e+02 Score=31.42 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=53.4
Q ss_pred cCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHH---HHHhh--hccEEE
Q psy17541 524 ANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAV---SYIMR--EVSKVI 598 (717)
Q Consensus 524 ~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAV---syiM~--~VdkVL 598 (717)
....+|+|.|.+..+..++. +...| .|+++ .|.+.+...+ +...|+++..++.... -..+. ++..|+
T Consensus 56 ~~~~I~it~Gs~~~l~~~~~-~~~~~---~vv~~--~P~y~~y~~~--~~~~G~~v~~vp~~~~~~~~~~l~~~~~k~v~ 127 (332)
T PRK06425 56 LKIKVLIGPGLTHFIYRLLS-YINVG---NIIIV--EPNFNEYKGY--AFTHGIRISALPFNLINNNPEILNNYNFDLIF 127 (332)
T ss_pred CcceEEECCCHHHHHHHHHH-HhCCC---cEEEe--CCChHHHHHH--HHHcCCeEEEEeCCcccCcHHHHhhcCCCEEE
Confidence 34457788888877666554 44322 56666 4888765433 3446888888764221 11121 334443
Q ss_pred EceeeEecCCCeecccch-------HHHHHHHHhCCCcEEe
Q psy17541 599 IGAHALLSNGAVMSRAGT-------AQVSLVARAFNVPVLA 632 (717)
Q Consensus 599 LGAdaVlaNG~VvNKiGT-------~~VALaAK~~~VPVyV 632 (717)
+ + .--|.+|+ ..++-.|+.+++.+++
T Consensus 128 l-------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 160 (332)
T PRK06425 128 I-------V-SPDNPLGNLISRDSLLTISEICRKKGALLFI 160 (332)
T ss_pred E-------e-CCCCCcCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 3 3 34455555 5566678888887664
No 315
>PLN02512 acetylglutamate kinase
Probab=36.68 E-value=2.5e+02 Score=30.70 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=62.7
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeE--EEEcCCC--Cch----hH---HHHHHHHHhCCCcEEEEcc-----------
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFR--VIIVDGS--PWY----EG---KEMLRRLVKHQVDCSYVLL----------- 584 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~Fr--VIVvESR--P~~----EG---r~lA~~L~~~GI~vTyI~D----------- 584 (717)
..||+||.++.+...+...-- ...|. +.+++.. +.. -| ..++..|.++|++..-+.-
T Consensus 81 ~iVlVHGgG~~i~~~~~~~gi-~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~ 159 (309)
T PLN02512 81 RPVLVHGGGPEINSWLKKVGI-EPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGGTAVGLSGKDGRLLRARPS 159 (309)
T ss_pred CEEEEECCcHHHHHHHHHcCC-CCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCCCeEEeehhhCCEEEEEEc
Confidence 589999999987776654411 11111 1122211 100 13 3578889999998777741
Q ss_pred -----------------hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 585 -----------------SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 585 -----------------SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
..+..++..-..+|+...++-.+|.++|--+=...+++|...+.--+++
T Consensus 160 ~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~ 225 (309)
T PLN02512 160 PNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLIL 225 (309)
T ss_pred CcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEE
Confidence 2233444444556666677777888888544455558899998754443
No 316
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=36.62 E-value=3.6e+02 Score=30.96 Aligned_cols=98 Identities=18% Similarity=0.332 Sum_probs=62.7
Q ss_pred hccCCCeEEEecCc-hHHHHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEcchH----HHHHhh-h
Q psy17541 522 KLANDDVILTYGCS-SLVEKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVLLSA----VSYIMR-E 593 (717)
Q Consensus 522 ~I~dGdvILTyg~S-StV~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~DSA----VsyiM~-~ 593 (717)
.+..|+--+.++.. .+|..++....+.|- +|++.++ .+.| +.+.+.|.+.||.|+|+.+.. ...+++ +
T Consensus 74 ~LEg~~~~~afsSGmaAI~~~~l~ll~~GD--~vl~~~~--~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~ 149 (396)
T COG0626 74 ELEGGEDAFAFSSGMAAISTALLALLKAGD--HVLLPDD--LYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPN 149 (396)
T ss_pred HhhCCCcEEEecCcHHHHHHHHHHhcCCCC--EEEecCC--ccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccC
Confidence 34566544444444 344444555555553 6666666 5666 566777788999999887533 344553 7
Q ss_pred ccEEEEceeeEecCCCeecccchHHHHHHHHhCC
Q psy17541 594 VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFN 627 (717)
Q Consensus 594 VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~ 627 (717)
...|+|=. . +| =++.-+=-..|+-+||.+|
T Consensus 150 tk~v~lEt--P-sN-P~l~v~DI~~i~~~A~~~g 179 (396)
T COG0626 150 TKLVFLET--P-SN-PLLEVPDIPAIARLAKAYG 179 (396)
T ss_pred ceEEEEeC--C-CC-cccccccHHHHHHHHHhcC
Confidence 88888864 1 23 3555556678999999999
No 317
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=36.61 E-value=1e+02 Score=30.87 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCC-CeecccchHHHHHHHHhCCCcEEecccCCc
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNG-AVMSRAGTAQVSLVARAFNVPVLAACETHK 638 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG-~VvNKiGT~~VALaAK~~~VPVyV~cEtyK 638 (717)
..+++.|.+.|++++++.... -+.+.|.|+|+--.....- ......|....-.-+...++|++-+|--+-
T Consensus 12 ~~~~~~l~~~g~~v~v~~~~~---~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q 82 (198)
T cd01748 12 RSVANALERLGAEVIITSDPE---EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQ 82 (198)
T ss_pred HHHHHHHHHCCCeEEEEcChH---HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH
Confidence 457888999999999988533 2457888877541110000 001122444444444556999998775443
No 318
>PRK04056 Maf-like protein; Reviewed
Probab=36.33 E-value=1.6e+02 Score=29.91 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=56.0
Q ss_pred EEecCchHHHHHHHHHHHcCCeeEEEEc---CCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 530 LTYGCSSLVEKILLTAHEKGTKFRVIIV---DGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 530 LTyg~SStV~~vL~~A~e~Gk~FrVIVv---ESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
|..+.+|--+.-|+.. .|..|.|+.. |+.+..+ -..++.+|+...- -++..-++. +.++||||.|.
T Consensus 2 iILAS~SprR~elL~~--~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka-------~~v~~~~~~-~~~vI~aDTvV 71 (180)
T PRK04056 2 IILASSSSTRANLLKE--AGIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKL-------EQFLKKYGN-ECNLLVADSVV 71 (180)
T ss_pred EEEeCCCHHHHHHHHH--CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHhCCC-CCEEEEeCEEE
Confidence 4455555445544443 3889998844 4433332 3567777765332 112222211 36999999977
Q ss_pred -cCCCeecccchHHHH--HHHHhCCCcEEec
Q psy17541 606 -SNGAVMSRAGTAQVS--LVARAFNVPVLAA 633 (717)
Q Consensus 606 -aNG~VvNKiGT~~VA--LaAK~~~VPVyV~ 633 (717)
-||.++.|-.+..-| |+-...|.+..|.
T Consensus 72 ~~~g~ilgKP~~~~eA~~~L~~lsg~~h~V~ 102 (180)
T PRK04056 72 SCGNKILRKAKDKEEAREMLKLQSGNEISVL 102 (180)
T ss_pred EECCEEecCCCCHHHHHHHHHHHCCCcEEEE
Confidence 599999999988766 5555566655543
No 319
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.32 E-value=2.1e+02 Score=32.31 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=55.8
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEec
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLS 606 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVla 606 (717)
..|+.+|....=...+......+..+.|.+.|.++... +...|.+ ||.+.+-... ... +.++|.|+++.. |-.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~---~~~~l~~-g~~~~~g~~~-~~~-~~~~d~vV~Spg-I~~ 80 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPP---GQEQLPE-DVELHSGGWN-LEW-LLEADLVVTNPG-IAL 80 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCch---hHHHhhc-CCEEEeCCCC-hHH-hccCCEEEECCC-CCC
Confidence 46788877765556666665554448999999887532 3345644 8876654211 222 367888766542 211
Q ss_pred CCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 607 NGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 607 NG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+.+....|++.|+||+-
T Consensus 81 ---------~~p~~~~a~~~gi~i~~ 97 (438)
T PRK04663 81 ---------ATPEIQQVLAAGIPVVG 97 (438)
T ss_pred ---------CCHHHHHHHHCCCcEEE
Confidence 24677778888888873
No 320
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=36.22 E-value=1.3e+02 Score=32.42 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=45.6
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc--c-hHHHHHhhh------ccEE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL--L-SAVSYIMRE------VSKV 597 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~--D-SAVsyiM~~------VdkV 597 (717)
.+++|.| +.....++......|. .|++.+ |.+.+......+ .|.++..+. | ..+-..+.. -.++
T Consensus 105 ~i~~tsG-~~a~~~~~~~l~~~gd--~vi~~~--~~~~~~~~~~~~--~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 177 (397)
T PRK06939 105 AILYSSC-FDANGGLFETLLGKED--AIISDA--LNHASIIDGVRL--CKAKRYRYANNDMADLEAQLKEAKEAGARHKL 177 (397)
T ss_pred EEEEcCh-HHHHHHHHHHhCCCCC--EEEEEh--hhhHHHHHHHHh--cCCceEEeCCCCHHHHHHHHHhhhccCCCCeE
Confidence 3455555 5555555554443332 344433 555554333333 455554443 1 222222321 1122
Q ss_pred EEceeeEecCCCeecccch----HHHHHHHHhCCCcEEecccCC
Q psy17541 598 IIGAHALLSNGAVMSRAGT----AQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 598 LLGAdaVlaNG~VvNKiGT----~~VALaAK~~~VPVyV~cEty 637 (717)
|+ -|.+.|..|+ -.|+-+|++|++++++ =+.|
T Consensus 178 v~-------~~~v~~~~G~~~~~~~l~~la~~~~~~li~-De~~ 213 (397)
T PRK06939 178 IA-------TDGVFSMDGDIAPLPEICDLADKYDALVMV-DDSH 213 (397)
T ss_pred EE-------EecCcCCCCCcCCHHHHHHHHHHhCCEEEE-ECcc
Confidence 22 2334555443 3567778999998764 4444
No 321
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=36.20 E-value=1.5e+02 Score=28.31 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHcCCeeEEEEcCCCCch--hHHHHHHHHHhC---CCcEEEEcch
Q psy17541 535 SSLVEKILLTAHEKGTKFRVIIVDGSPWY--EGKEMLRRLVKH---QVDCSYVLLS 585 (717)
Q Consensus 535 SStV~~vL~~A~e~Gk~FrVIVvESRP~~--EGr~lA~~L~~~---GI~vTyI~DS 585 (717)
+..+...|..|.++|.+++|++....-.. ........|... ||.+.++...
T Consensus 52 ~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~ 107 (176)
T cd00138 52 GPVILDALLAAARRGVKVRILVDEWSNTDLKISSAYLDSLRALLDIGVRVFLIRTD 107 (176)
T ss_pred chHHHHHHHHHHHCCCEEEEEEcccccCCchHHHHHHHHHHHhhcCceEEEEEcCC
Confidence 56788889999999999999887765443 334566777776 7888776543
No 322
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.19 E-value=5e+02 Score=27.83 Aligned_cols=105 Identities=22% Similarity=0.202 Sum_probs=62.3
Q ss_pred CeEEEecC---chHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEE-EcchH----HHHHhhh-ccEE
Q psy17541 527 DVILTYGC---SSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSY-VLLSA----VSYIMRE-VSKV 597 (717)
Q Consensus 527 dvILTyg~---SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTy-I~DSA----VsyiM~~-VdkV 597 (717)
-++|||-+ ..-+++|+..+.+.|.. -|+|.|= |..|...+...+.++|++... ++-+. +..+... -++|
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvd-GviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVD-GLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCc-EEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 36777753 33568899999888754 5666665 556888999999999998666 54444 2223222 2333
Q ss_pred EE-ceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 598 II-GAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 598 LL-GAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
-+ +--.+.....-...-....+..+.+..++||+|=
T Consensus 170 Y~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vG 206 (258)
T PRK13111 170 YYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVG 206 (258)
T ss_pred EEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEE
Confidence 22 2211111111122233446667777779999983
No 323
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=36.17 E-value=2e+02 Score=29.08 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=39.9
Q ss_pred HhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q psy17541 520 HNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVII 599 (717)
Q Consensus 520 ~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLL 599 (717)
.+.+-.|.++++.||..+=..+-..++..| -+|+|+|..|.. .+.. ...|..+.- +..++..+|.+|.
T Consensus 17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~----alqA-~~dGf~v~~-----~~~a~~~adi~vt 84 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIR----ALQA-AMDGFEVMT-----LEEALRDADIFVT 84 (162)
T ss_dssp H-S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHH----HHHH-HHTT-EEE------HHHHTTT-SEEEE
T ss_pred CceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHH----HHHh-hhcCcEecC-----HHHHHhhCCEEEE
Confidence 445668999999999988666666665444 689999999953 2222 237888763 4456778887764
No 324
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=36.10 E-value=2.8e+02 Score=29.14 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=66.1
Q ss_pred HHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCC---------CCch-----hH----HHHHHHHHhC--
Q psy17541 516 CMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDG---------SPWY-----EG----KEMLRRLVKH-- 575 (717)
Q Consensus 516 a~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvES---------RP~~-----EG----r~lA~~L~~~-- 575 (717)
+..+.++|.+ ..||..|.+.+=-.++..+...|.. +++++|. |-.+ -| ..++++|.+.
T Consensus 15 g~~~q~~L~~-~~VlvvG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp 92 (240)
T TIGR02355 15 DFDGQEALKA-SRVLIVGLGGLGCAASQYLAAAGVG-NLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINP 92 (240)
T ss_pred CHHHHHHHhC-CcEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCC
Confidence 3345556654 7899999886645555555555743 3444432 2111 13 2345667664
Q ss_pred CCcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 576 QVDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 576 GI~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
.+.++.+. ...+..++.++|.||...|.... .+.+.-+|+.+++||+...
T Consensus 93 ~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~---------r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 93 HIAINPINAKLDDAELAALIAEHDIVVDCTDNVEV---------RNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred CcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 45555553 12355677889999888877532 4667888999999999743
No 325
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=36.07 E-value=1.6e+02 Score=34.02 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=56.3
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceee
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAda 603 (717)
.+..||.+|.+-....+..+.+..|. ..+.+=.|-..-...+|+.|. ..+++.+-+..++.++|.||.+..+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV--KKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEecCC
Confidence 35689999999988888888876553 445555777777777888775 7788888999999999999887533
No 326
>PRK08064 cystathionine beta-lyase; Provisional
Probab=35.95 E-value=3.5e+02 Score=30.17 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=51.7
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEcchH---HHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVLLSA---VSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~DSA---VsyiM~-~VdkVLLG 600 (717)
..|++-+-+.++..+|. ++..|. +|++. .|.+.| ..+...+...|+.+.++.... +...+. +...|++
T Consensus 71 ~~v~~~sG~~ai~~~l~-~l~~Gd--~Vlv~--~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l- 144 (390)
T PRK08064 71 KGFAFASGMAAISTAFL-LLSKGD--HVLIS--EDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYV- 144 (390)
T ss_pred CeEEECCHHHHHHHHHH-HhCCCC--EEEEc--cCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEE-
Confidence 34444333345555553 555555 46664 466655 233455677899999987533 333332 3444444
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
..---..|.+.. -..|+-+|+.++++|+|
T Consensus 145 ~~p~NptG~~~d---l~~I~~la~~~g~~vvv 173 (390)
T PRK08064 145 ETPSNPLLKVTD---IRGVVKLAKAIGCLTFV 173 (390)
T ss_pred ECCCCCCcEecc---HHHHHHHHHHcCCEEEE
Confidence 111112333322 23567788999988776
No 327
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=35.95 E-value=1.2e+02 Score=29.23 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=28.4
Q ss_pred eEEEecCchHHHHHHHHHHHc-CCeeEEEEcCCCCchhHHHHHHHH
Q psy17541 528 VILTYGCSSLVEKILLTAHEK-GTKFRVIIVDGSPWYEGKEMLRRL 572 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~-Gk~FrVIVvESRP~~EGr~lA~~L 572 (717)
+|.||.....+..+|....++ ...++|||+|.....+-...++.+
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~ 47 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSL 47 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHh
Confidence 577777777777777776654 235678877766554444444444
No 328
>PRK04425 Maf-like protein; Reviewed
Probab=35.87 E-value=1.5e+02 Score=30.58 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=56.1
Q ss_pred EEecCchHHHHHHHHHHHcCCeeEEEEc---CCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 530 LTYGCSSLVEKILLTAHEKGTKFRVIIV---DGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 530 LTyg~SStV~~vL~~A~e~Gk~FrVIVv---ESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
+..+.+|--+.-|+.. .|-.|.|+.. |+-...+ -..++.+|+..... ++..- .-+.++||||.|.
T Consensus 7 iILAS~SprR~elL~~--~g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~-------~v~~~--~~~~lvI~aDTvV 75 (196)
T PRK04425 7 LVLGTSSVFRREQMER--LGIAFQAASPDFDETPMLGESAPQTALRLAEGKAR-------SLTGR--FPEALIVGADQVA 75 (196)
T ss_pred EEEeCCCHHHHHHHHH--CCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHhh--CCCCEEEEeCeEE
Confidence 3455555444444433 3888998844 3332222 35777777654321 12111 2367999999976
Q ss_pred -cCCCeecccchHHHH--HHHHhCCCcEEec
Q psy17541 606 -SNGAVMSRAGTAQVS--LVARAFNVPVLAA 633 (717)
Q Consensus 606 -aNG~VvNKiGT~~VA--LaAK~~~VPVyV~ 633 (717)
-||.++.|-.+..-| |+-+..|....|+
T Consensus 76 ~~~g~ilgKP~~~eeA~~~L~~lsg~~h~v~ 106 (196)
T PRK04425 76 WCDGRQWGKPMNLANAQKMLMHLSGREIEFY 106 (196)
T ss_pred EECCEEecCCCCHHHHHHHHHHhCCCcEEEE
Confidence 599999999988766 5666666655443
No 329
>PRK14362 Maf-like protein; Provisional
Probab=35.77 E-value=2.3e+02 Score=29.52 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=54.2
Q ss_pred EEecCchHHHHHHHHHHHcCCeeEEE---EcC-CC-CchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 530 LTYGCSSLVEKILLTAHEKGTKFRVI---IVD-GS-PWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 530 LTyg~SStV~~vL~~A~e~Gk~FrVI---VvE-SR-P~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
|..+.+|--+.-|+.. .|..|.|+ +.| +- +...-..++.+|+...-. ++..- .-+.++||||.|
T Consensus 14 iILAS~SprR~eLL~~--~g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~KA~-------~v~~~--~~~~~VI~ADTv 82 (207)
T PRK14362 14 VVLASGSPRRREFLEQ--MGLPFEVILPGAAEPSPIEGEQPEAYARRAAEAKAR-------AVAAD--HAGRLVIAADTV 82 (207)
T ss_pred EEEeCCCHHHHHHHHH--CCCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHh--CCCCEEEEeCeE
Confidence 3344554444444433 38899988 445 32 222235677777653211 11111 135799999997
Q ss_pred e-cCCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 605 L-SNGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 605 l-aNG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
. -||.++.|-.+..-| |+-+-.|....|
T Consensus 83 V~~~g~ilgKP~~~eeA~~~L~~lsG~~H~V 113 (207)
T PRK14362 83 VALDGMILGKPADRADALSMLRRLAGRTHEV 113 (207)
T ss_pred EEeCCEEcCCCCCHHHHHHHHHHhCCCceEE
Confidence 6 599999999998766 555555655444
No 330
>PRK09082 methionine aminotransferase; Validated
Probab=35.76 E-value=3.8e+02 Score=29.35 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=50.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---------HHHHHhh-hccE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---------AVSYIMR-EVSK 596 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---------AVsyiM~-~Vdk 596 (717)
.+++|-|.+..+..++......|. .|++. .|.+-+...+. ...|..+..+... .+...+. ++..
T Consensus 93 ~i~~t~G~~~al~~~~~~~~~~gd--~Vli~--~p~y~~~~~~~--~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 166 (386)
T PRK09082 93 EITVTAGATEALFAAILALVRPGD--EVIVF--DPSYDSYAPAI--ELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRL 166 (386)
T ss_pred cEEEeCCHHHHHHHHHHHHcCCCC--EEEEe--CCCchhhHHHH--HHcCCEEEEEecCcccccCCHHHHHHhcCccceE
Confidence 577778877776665554433343 34443 46666543333 3368777666642 2222222 3334
Q ss_pred EEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 597 VIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
|++ ..-=-.-|.+++..=-..++-+|+++++.+++
T Consensus 167 v~l-~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 167 IIL-NTPHNPSGTVWSAADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred EEE-eCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEE
Confidence 433 11111233333333335567788899986664
No 331
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=35.65 E-value=3.8e+02 Score=28.69 Aligned_cols=102 Identities=11% Similarity=0.046 Sum_probs=58.2
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
..+++|.|.+..+..++ .+ ..|. +|+| ++ |.+.+... .+...|+++..++...+...+.+.+.|++--=. -
T Consensus 65 ~~I~it~Gs~~al~~~~-~~-~~gd--~v~v-~~-P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~-N 135 (330)
T PRK05664 65 PQLLPVAGSQAAIQALP-RL-RAPG--RVGV-LS-PCYAEHAH--AWRRAGHQVRELDEAEVEAALDSLDVLVVVNPN-N 135 (330)
T ss_pred CCEEECcCHHHHHHHHH-Hc-cCCC--EEEE-cC-CChHHHHH--HHHHcCCeEEEechhhHhhhhcCCCEEEEeCCc-C
Confidence 36888888887755443 22 2343 4444 33 77776533 334579999998876776666665554433111 2
Q ss_pred cCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 606 SNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 606 aNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
..|.+++.-==..++-.|+.+++ ++|+=|.|
T Consensus 136 PTG~~~s~~~l~~l~~~~~~~~~-~iI~DE~y 166 (330)
T PRK05664 136 PTGRRFDPARLLAWHARLAARGG-WLVVDEAF 166 (330)
T ss_pred CCCCccCHHHHHHHHHHHHhcCC-EEEEECCc
Confidence 23555544443445556677887 44445555
No 332
>PRK14361 Maf-like protein; Provisional
Probab=35.57 E-value=1.5e+02 Score=30.30 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=53.2
Q ss_pred ecCchHHHHHHHHHHHcCCeeEEEE---cCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe-cC
Q psy17541 532 YGCSSLVEKILLTAHEKGTKFRVII---VDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL-SN 607 (717)
Q Consensus 532 yg~SStV~~vL~~A~e~Gk~FrVIV---vESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl-aN 607 (717)
.+.+|--+.-|+.. .|..|.|+. .|+.+...-..++.+|+...-. ++..- .-+.++||||.|. -|
T Consensus 3 LAS~SprR~elL~~--~g~~f~v~~~~~dE~~~~~~p~~~v~~lA~~Ka~-------~v~~~--~~~~~vI~aDTvV~~~ 71 (187)
T PRK14361 3 LASGSPRRRELLEN--LGVPFQVVVSGEAEDSTETDPARLAAELALLKAR-------AVARL--HPDAVVIAADTVVALG 71 (187)
T ss_pred EccCCHHHHHHHHH--CCCCcEEECCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHh--CCCCEEEEeCeEEEEC
Confidence 44444434444333 388898874 4444332235667777654321 11111 2367999999977 59
Q ss_pred CCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 608 GAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 608 G~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
|.++.|-.+..-| |+-...|.+..|
T Consensus 72 g~ilgKP~~~eeA~~~L~~lsG~~h~V 98 (187)
T PRK14361 72 GVLLAKPADEAENEAFLRVLSGRTHQV 98 (187)
T ss_pred CEEecCCCCHHHHHHHHHHhCCCceEE
Confidence 9999999998766 555555554443
No 333
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=35.47 E-value=5.5e+02 Score=26.99 Aligned_cols=97 Identities=11% Similarity=0.175 Sum_probs=45.2
Q ss_pred EEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc--------hHHHHHhhh---ccEE
Q psy17541 529 ILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL--------SAVSYIMRE---VSKV 597 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D--------SAVsyiM~~---VdkV 597 (717)
++|-|-|..+..++......|. +|+|++ .+.+ |..+.......|+++..+.. ..+-..+.+ +..|
T Consensus 54 ~~~~~gt~~l~~~~~~~~~~~~--~vi~~~-~~~~-~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v 129 (355)
T TIGR03301 54 LLQGSGTFAVEATIGSLVPRDG--KLLVLI-NGAY-GERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITHV 129 (355)
T ss_pred EEeCCcHHHHHHHHHhccCCCC--eEEEEC-CCch-hhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceEE
Confidence 3455555555555555433322 344433 2222 22233344557888887752 123333321 2222
Q ss_pred EEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 598 IIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 598 LLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
++ .+.=..+|.+.. -..|+-+|+.|+++++|=
T Consensus 130 ~~-~~~~~~~G~~~~---~~~i~~l~~~~~~~livD 161 (355)
T TIGR03301 130 AT-VHHETTTGILNP---LEAIAKVARSHGAVLIVD 161 (355)
T ss_pred EE-EecCCcccchhH---HHHHHHHHHHcCCEEEEE
Confidence 21 111112343332 245777788888887763
No 334
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=35.24 E-value=61 Score=36.78 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=44.3
Q ss_pred CeEEEecCchHHHHHHHHH-HHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhh--ccEEEEceee
Q psy17541 527 DVILTYGCSSLVEKILLTA-HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMRE--VSKVIIGAHA 603 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A-~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~--VdkVLLGAda 603 (717)
..||.+|.+.- +..|..+ ++.+..-.||+ -|.+.|....... ..+++.+.-..++..+.++ +|.|+.|.+.
T Consensus 5 ~kvLviG~g~r-ehal~~~~~~~~~~~~~~~---~pgn~g~~~~~~~--~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~ 78 (426)
T PRK13789 5 LKVLLIGSGGR-ESAIAFALRKSNLLSELKV---FPGNGGFPDDELL--PADSFSILDKSSVQSFLKSNPFDLIVVGPED 78 (426)
T ss_pred cEEEEECCCHH-HHHHHHHHHhCCCCCEEEE---ECCchHHhccccc--cccCcCcCCHHHHHHHHHHcCCCEEEECCch
Confidence 58999999876 4555544 44555557787 5655554211101 1123333344455555554 9999999887
Q ss_pred EecCC
Q psy17541 604 LLSNG 608 (717)
Q Consensus 604 VlaNG 608 (717)
.+..|
T Consensus 79 ~l~~g 83 (426)
T PRK13789 79 PLVAG 83 (426)
T ss_pred HHHHH
Confidence 66544
No 335
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=35.22 E-value=94 Score=37.67 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHcCCeeEEEEc-CCCCchhH-HHHHHHHHhCCCcEEEEc
Q psy17541 536 SLVEKILLTAHEKGTKFRVIIV-DGSPWYEG-KEMLRRLVKHQVDCSYVL 583 (717)
Q Consensus 536 StV~~vL~~A~e~Gk~FrVIVv-ESRP~~EG-r~lA~~L~~~GI~vTyI~ 583 (717)
|-+.+.|.+|+++||+..|.|= -.|=..|- ..-|+.|.++|+.|.|-.
T Consensus 384 SpIV~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvhVvyG~ 433 (696)
T COG0855 384 SPIVRALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVHVVYGV 433 (696)
T ss_pred CHHHHHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcEEEecc
Confidence 4445667777789999887652 23333332 467999999999998854
No 336
>PRK09148 aminotransferase; Validated
Probab=35.04 E-value=2.4e+02 Score=31.30 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=57.5
Q ss_pred ccCC-CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch-------HHHHHh---
Q psy17541 523 LAND-DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS-------AVSYIM--- 591 (717)
Q Consensus 523 I~dG-dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS-------AVsyiM--- 591 (717)
+... .+++|.|.+..+..++......|. .|++ + .|.+.+...+. ...|+.+..+... .+-..+
T Consensus 89 ~~~~~~I~it~G~~~al~~~~~~l~~~gd--~Vl~-~-~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~~l~~~~~~~ 162 (405)
T PRK09148 89 LNPDTQVVATLGSKEGFANMAQAITAPGD--VILC-P-NPSYPIHAFGF--IMAGGVIRSVPAEPDEEFFPALERAVRHS 162 (405)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHhcCCCC--EEEE-c-CCCCcccHHHH--HhcCCEEEEEeCCCCCCCccCHHHHHhhc
Confidence 4444 689999999886665555444453 3444 3 47777754333 3468888777531 122222
Q ss_pred -hhccEEEEce-eeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 -REVSKVIIGA-HALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 -~~VdkVLLGA-daVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+...|++-- + -..|.+++.-=-..++-+|+.|++.|++
T Consensus 163 ~~~~~~v~l~~P~--NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 203 (405)
T PRK09148 163 IPKPIALIVNYPS--NPTAYVADLDFYKDVVAFAKKHDIIILS 203 (405)
T ss_pred cccceEEEEeCCC--CCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 2334444321 1 1336666654445677778999885553
No 337
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=35.03 E-value=1.7e+02 Score=30.51 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=59.6
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
.|..||..|.+++-..=++.....|-.+.||-.+.-|.+. ......+| ..+-+.--......+++||+-.|--
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~-----~~~~~~~i--~~~~~~~~~~~~~~~~lviaAt~d~ 83 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELK-----ALIEEGKI--KWIEREFDAEDLDDAFLVIAATDDE 83 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHH-----HHHHhcCc--chhhcccChhhhcCceEEEEeCCCH
Confidence 5778999999998777666677788988888877733332 22222332 1222211122222367776654322
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
---..++-+|+.+++||.|+-..
T Consensus 84 ---------~ln~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 84 ---------ELNERIAKAARERRILVNVVDDP 106 (210)
T ss_pred ---------HHHHHHHHHHHHhCCceeccCCc
Confidence 22356899999999999997543
No 338
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=34.91 E-value=4.3e+02 Score=28.89 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=56.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHH-HHHHHh----------CCCcEEEEc--c-hHHHHHh-
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEM-LRRLVK----------HQVDCSYVL--L-SAVSYIM- 591 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~l-A~~L~~----------~GI~vTyI~--D-SAVsyiM- 591 (717)
.+++|.|-+..++.+|+.+...|+. +|++.|. .+.|... +..+.. .+.++..++ | .++-.++
T Consensus 105 ~v~~~~sgsea~~~al~~~~~~g~~-~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 181 (398)
T PRK03244 105 RVFFCNSGAEANEAAFKLARLTGRT-KIVAAEG--GFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD 181 (398)
T ss_pred EEEEeCchHHHHHHHHHHHHHHCCC-eEEEECC--CcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc
Confidence 5788888888888888877666653 5666653 3444321 111111 122344443 2 3344444
Q ss_pred hhccEEEEceeeEec-CCCeecccc-hHHHHHHHHhCCCcEEe
Q psy17541 592 REVSKVIIGAHALLS-NGAVMSRAG-TAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~~VdkVLLGAdaVla-NG~VvNKiG-T~~VALaAK~~~VPVyV 632 (717)
.++-.|++ +.+.. .|.++...+ =..+.-+|++|++.+++
T Consensus 182 ~~~~avii--ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 222 (398)
T PRK03244 182 DDTAAVFL--EPIQGEAGVVPPPAGYLAAAREITDRHGALLVL 222 (398)
T ss_pred CCeEEEEE--ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34555555 44433 344444555 44677889999998875
No 339
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=34.64 E-value=5.5e+02 Score=26.78 Aligned_cols=106 Identities=13% Similarity=0.224 Sum_probs=64.8
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeE----EEEcCCC--Cchh----H---HHHHHHHHhCCCcEEEEc---------
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFR----VIIVDGS--PWYE----G---KEMLRRLVKHQVDCSYVL--------- 583 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~Fr----VIVvESR--P~~E----G---r~lA~~L~~~GI~vTyI~--------- 583 (717)
..+||+||-++.+...+..+ |...+ ..+++.. .... | +.++..|.+.|++..-+.
T Consensus 32 ~~iVlVhGgg~~~~~~~~~~---g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l~~~Gv~a~~l~~~~~~~~~~ 108 (252)
T cd04249 32 RQLVIVHGGGCVVDELLKKL---NFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQAIKAGLKPVGLSLADGGMTAV 108 (252)
T ss_pred CCEEEECCCCHHHHHHHHHc---CCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHHHhCCCCceeeeccCCCEEEE
Confidence 36899999999877766544 22111 1122211 1100 1 345666667888644442
Q ss_pred -----------------chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 584 -----------------LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 584 -----------------DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
...+-.+|..-..+++.-.++..+|.++|--|=...+++|...+..++++.
T Consensus 109 ~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~~i~lt 176 (252)
T cd04249 109 TQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNADLVLLS 176 (252)
T ss_pred EEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCCEEEEe
Confidence 223334445545677776778889999998888888899999998855443
No 340
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=34.62 E-value=2.9e+02 Score=29.13 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=53.4
Q ss_pred HHhhccCCCeEEEecCc--hHHHHHHHHHHHcC-CeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhcc
Q psy17541 519 FHNKLANDDVILTYGCS--SLVEKILLTAHEKG-TKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVS 595 (717)
Q Consensus 519 A~e~I~dGdvILTyg~S--StV~~vL~~A~e~G-k~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~Vd 595 (717)
|..+|+||++|.+-|+. ..=..++....++| +.+++|-........| +..|...|. |.
T Consensus 12 Av~~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g---~~~L~~~G~----------------Vk 72 (222)
T TIGR02429 12 AVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIG---LAALLKAGQ----------------VR 72 (222)
T ss_pred HHhhCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCcc---HHHHHhCCC----------------Ee
Confidence 44589999999988864 33344444444455 5688886443222122 233444442 22
Q ss_pred EEEEce---------eeEecCCCe---ecccchHHHHHHHHhCCCcEEec
Q psy17541 596 KVIIGA---------HALLSNGAV---MSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 596 kVLLGA---------daVlaNG~V---vNKiGT~~VALaAK~~~VPVyV~ 633 (717)
+++.|- ...+.+|-+ .-.-||..-.+-|-..|+|++..
T Consensus 73 r~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 73 KLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred EEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 222220 001112222 23678899999999999998764
No 341
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=34.62 E-value=26 Score=39.63 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=32.6
Q ss_pred HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCcccc
Q psy17541 586 AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCE 641 (717)
Q Consensus 586 AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~ 641 (717)
.+--.|..+|.||.|==.+ ..-++.. -....||-+|+.|+|||+++|.......
T Consensus 277 ~l~~~l~~aDlVITGEG~~-D~Qtl~G-K~p~~Va~~A~~~~vPviav~G~~~~~~ 330 (377)
T PF02595_consen 277 GLEERLEDADLVITGEGRL-DAQTLAG-KVPGGVARLAKKHGVPVIAVAGSVDLDA 330 (377)
T ss_dssp THHHHCCC-SEEEE--CEC-STTTTTT-CHHHHHHCCHCCTT--EEEEECEC-TT-
T ss_pred CHHHHhcCCCEEEECcccc-ccccCCC-cHHHHHHHHHHHcCCcEEEEeCCCCCCh
Confidence 4556678899999997554 2222332 3356678889999999999999865443
No 342
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=34.43 E-value=2.3e+02 Score=29.32 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHH---cCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCee
Q psy17541 535 SSLVEKILLTAHE---KGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVM 611 (717)
Q Consensus 535 SStV~~vL~~A~e---~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~Vv 611 (717)
+...+.++..|+. .+.++-|=|.=+. +|...++.|.+.||+|...+.-++..++-- .-.||+-|...=+-+
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~A---a~AGA~yvsP~vgR~ 133 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEGIKTNVTAIFSAAQALLA---AKAGATYVSPFVGRI 133 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcCCceeeEEecCHHHHHHH---HHcCCCEEEEecChH
Confidence 3344566666554 2222222233333 899999999999999887665444444321 112454444322222
Q ss_pred cccc---hH---HHHHHHHhCCCcEEecccCCc
Q psy17541 612 SRAG---TA---QVSLVARAFNVPVLAACETHK 638 (717)
Q Consensus 612 NKiG---T~---~VALaAK~~~VPVyV~cEtyK 638 (717)
...| -. .+.-+.+.++.|.=|++.+++
T Consensus 134 ~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 134 DDLGGDGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 2222 22 333455567888777777765
No 343
>PLN02735 carbamoyl-phosphate synthase
Probab=34.36 E-value=2.4e+02 Score=36.21 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=57.7
Q ss_pred CCeEEEecCc--hHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc------chHHHHHhh-hccE
Q psy17541 526 DDVILTYGCS--SLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL------LSAVSYIMR-EVSK 596 (717)
Q Consensus 526 GdvILTyg~S--StV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~------DSAVsyiM~-~Vdk 596 (717)
|.++++.+.. .-+..+....++ ..|++|.+++ +++.|.++||+|+.|. .+.+-.+.. ++|+
T Consensus 973 g~vliSv~d~~K~~~~~~a~~L~~--lG~~i~aT~G--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~ 1042 (1102)
T PLN02735 973 GTVFISLNDLTKPHLVPIARGFLE--LGFRIVSTSG--------TAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQL 1042 (1102)
T ss_pred CeEEEEEecCCchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeEE
Confidence 4455555442 223333333332 4567776553 7888999999988763 233444443 6899
Q ss_pred EEEceeeEecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 597 VIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
||-- .+|.-.-..-.|.+=.+|-.++||++--..
T Consensus 1043 vin~-----~~~~~~~~~d~~~iRr~a~~~~ip~~t~~~ 1076 (1102)
T PLN02735 1043 MVIT-----SSGDALDQKDGRQLRRMALAYKVPIITTVA 1076 (1102)
T ss_pred EEEC-----CCCccccccccHHHHHHHHHcCCCEEecHH
Confidence 9743 234332133468889999999999985433
No 344
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=34.22 E-value=2.6e+02 Score=29.39 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEc-chHHHHHhhh
Q psy17541 539 EKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVL-LSAVSYIMRE 593 (717)
Q Consensus 539 ~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~-DSAVsyiM~~ 593 (717)
...|..+.++|++ -|+++.+-|.+-| ..+++.|.+.||++++|+ .+++.++..+
T Consensus 70 ~~~i~~~~~~g~~-Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~ 126 (257)
T PRK15473 70 IDLMEAGVKAGKT-VVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAE 126 (257)
T ss_pred HHHHHHHHHCCCe-EEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHH
Confidence 3344444455665 3445578887776 588888888899999998 6666666553
No 345
>PRK12342 hypothetical protein; Provisional
Probab=34.19 E-value=1.8e+02 Score=31.19 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=59.6
Q ss_pred eEEEecCchHHHH-HHHHHHHcCCeeEEEEcCCCCchhH---HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceee
Q psy17541 528 VILTYGCSSLVEK-ILLTAHEKGTKFRVIIVDGSPWYEG---KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 528 vILTyg~SStV~~-vL~~A~e~Gk~FrVIVvESRP~~EG---r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAda 603 (717)
++||+|-.+.... ++++|...|-.--|.|.| | -+.| ..+++.|.. ++-.+ ..|.||.|-.+
T Consensus 55 tvls~Gp~~a~~~~l~r~alamGaD~avli~d-~-~~~g~D~~ata~~La~-----------~i~~~--~~DLVl~G~~s 119 (254)
T PRK12342 55 AALTVGGSLLQNSKVRKDVLSRGPHSLYLVQD-A-QLEHALPLDTAKALAA-----------AIEKI--GFDLLLFGEGS 119 (254)
T ss_pred EEEEeCCChHhHHHHHHHHHHcCCCEEEEEec-C-ccCCCCHHHHHHHHHH-----------HHHHh--CCCEEEEcCCc
Confidence 5788898776555 567788888774444543 3 2333 455666653 22221 48999999888
Q ss_pred EecCCCeecccchHHHHHHHHhCCCcEEecccCCccc
Q psy17541 604 LLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFC 640 (717)
Q Consensus 604 VlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs 640 (717)
+-.+.+ ..=+++|...|+|++-.+...++.
T Consensus 120 ~D~~tg-------qvg~~lA~~Lg~P~vt~v~~~~~~ 149 (254)
T PRK12342 120 GDLYAQ-------QVGLLLGELLQLPVINAVSKIQRQ 149 (254)
T ss_pred ccCCCC-------CHHHHHHHHhCCCcEeeEEEEEEe
Confidence 765543 223589999999998777665554
No 346
>PRK07682 hypothetical protein; Validated
Probab=34.19 E-value=4.5e+02 Score=28.47 Aligned_cols=100 Identities=16% Similarity=0.263 Sum_probs=48.7
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh-hc
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL----------SAVSYIMR-EV 594 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D----------SAVsyiM~-~V 594 (717)
.++++|.|.+..+..++......|. +|++. +|.+.+... .+...|..+..+.. .++-..+. ++
T Consensus 82 ~~i~~t~G~~~al~~~~~~l~~~gd--~vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 155 (378)
T PRK07682 82 DEIIVTVGASQALDVAMRAIINPGD--EVLIV--EPSFVSYAP--LVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKT 155 (378)
T ss_pred CcEEEeCChHHHHHHHHHHhCCCCC--EEEEe--CCCchhhHH--HHHHcCCEEEEeecCCccCCCCCHHHHHhhcCccc
Confidence 3688888887776655554443343 44443 466654332 23335666555542 11222222 23
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
..|++- .---.-|.++++---..++-+|+.|++.+++
T Consensus 156 ~~v~~~-~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 192 (378)
T PRK07682 156 KAILLC-SPNNPTGAVLNKSELEEIAVIVEKHDLIVLS 192 (378)
T ss_pred EEEEEE-CCCCCcCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 333321 1111223333333233566778888876654
No 347
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=34.18 E-value=79 Score=30.20 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=43.7
Q ss_pred EEEcCCCCc-----hhHHHHHHHHHhCCCcE-EEE-cchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhC
Q psy17541 554 VIIVDGSPW-----YEGKEMLRRLVKHQVDC-SYV-LLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAF 626 (717)
Q Consensus 554 VIVvESRP~-----~EGr~lA~~L~~~GI~v-TyI-~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~ 626 (717)
+||+-+.|+ .+|..+|..+.+.|.++ ++. .+.+|....+.. ...+. .+-=+.....++..|
T Consensus 4 ~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q----------~p~~~--~~n~~~~~~~L~~~~ 71 (128)
T PRK00207 4 AIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANALT----------VPASD--EFDLVRAWQQLAAEH 71 (128)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCC----------CCchh--hhhHHHHHHHHHHhc
Confidence 456667777 45678888888888873 332 244444443321 11111 111134555778889
Q ss_pred CCcEEecccCCc
Q psy17541 627 NVPVLAACETHK 638 (717)
Q Consensus 627 ~VPVyV~cEtyK 638 (717)
+||+|||..+-+
T Consensus 72 ~v~l~vC~~~a~ 83 (128)
T PRK00207 72 GVALNVCVAAAL 83 (128)
T ss_pred CCEEEEeHHHHH
Confidence 999999987754
No 348
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=34.17 E-value=2.3e+02 Score=28.51 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=57.4
Q ss_pred CCCeEEEecCchHHHHHHH-HHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-c----hHHHHHhhh-----
Q psy17541 525 NDDVILTYGCSSLVEKILL-TAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-L----SAVSYIMRE----- 593 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~-~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-D----SAVsyiM~~----- 593 (717)
.|.+||+.|-++-+-..|. ...+.| ++|++++.++ .+...+...|...|.++.++. | ..+..++.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~-~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDP-AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCH-HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4567888887765554444 444455 5777775443 344556667776676655442 2 334444443
Q ss_pred --ccEEEEceeeEecCCCe-------------ecccchHHHHHHHHhC----CCcEEecccC
Q psy17541 594 --VSKVIIGAHALLSNGAV-------------MSRAGTAQVSLVARAF----NVPVLAACET 636 (717)
Q Consensus 594 --VdkVLLGAdaVlaNG~V-------------vNKiGT~~VALaAK~~----~VPVyV~cEt 636 (717)
+|.||..|-.. ..+.+ +|-.|++.+.-.+..+ +...+|...+
T Consensus 86 ~~~d~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss 146 (255)
T PRK07523 86 GPIDILVNNAGMQ-FRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS 146 (255)
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 56666554221 11111 4556676666655432 4445555433
No 349
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=34.09 E-value=5.5e+02 Score=27.32 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=60.2
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeE----EEEcCCC--Cchh----H---HHHHHHHHhCCCcEEEEc----------
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFR----VIIVDGS--PWYE----G---KEMLRRLVKHQVDCSYVL---------- 583 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~Fr----VIVvESR--P~~E----G---r~lA~~L~~~GI~vTyI~---------- 583 (717)
..||+||.++.+...+... |...+ +.+++.. +... | ..++..|.+.|++..-+.
T Consensus 48 ~~ViVhG~g~~~~~~l~~~---g~~~~~~~g~r~t~~~~~~~~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~ 124 (279)
T cd04250 48 NPVVVHGGGPEINEMLKKL---GIESEFVNGLRVTDEETMEIVEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAK 124 (279)
T ss_pred CEEEEcCCcHHHHHHHHHC---CCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEE
Confidence 5899999999877766654 22211 1112111 1100 2 246788888887654444
Q ss_pred -----------------------chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 584 -----------------------LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 584 -----------------------DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
-..+..++..-...++..=++-.+|.+++--+=...+++|...+.--+++
T Consensus 125 ~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ 197 (279)
T cd04250 125 KKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLIL 197 (279)
T ss_pred ECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEE
Confidence 13344444443456666444555777776556667778999998765543
No 350
>PRK02948 cysteine desulfurase; Provisional
Probab=33.94 E-value=6.4e+02 Score=27.29 Aligned_cols=117 Identities=9% Similarity=0.082 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHc--CCeeEEEEcCCCCchhH-HHHHHHHHhCCCcEEEEcch
Q psy17541 509 DMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEK--GTKFRVIIVDGSPWYEG-KEMLRRLVKHQVDCSYVLLS 585 (717)
Q Consensus 509 ~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~--Gk~FrVIVvESRP~~EG-r~lA~~L~~~GI~vTyI~DS 585 (717)
+.+++.|++..- .....+++|-|-+..+..++..+... +..-.|++.+ +.+.+ ....+.+...|+++..+...
T Consensus 46 ~~~r~~la~~~g--~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~ 121 (381)
T PRK02948 46 QVCRKTFAEMIG--GEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTP--MEHASIHSYFQSLESQGYTVTEIPVD 121 (381)
T ss_pred HHHHHHHHHHhC--CCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECC--cccHHHHHHHHHHHhCCCEEEEEeeC
Confidence 334555554321 13445667766555544444433321 1222444432 22222 23334566689988888632
Q ss_pred --------HHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 586 --------AVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 586 --------AVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+...+..-.++++=.+.-...|.+.. + ..|+-+|+.++++|+|
T Consensus 122 ~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~-~--~~I~~l~~~~~~~viv 173 (381)
T PRK02948 122 KSGLIRLVDLERAITPDTVLASIQHANSEIGTIQP-I--AEIGALLKKYNVLFHS 173 (381)
T ss_pred CCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehh-H--HHHHHHHHHcCCEEEE
Confidence 122222221222222222223344433 2 2477788889988776
No 351
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.91 E-value=2.1e+02 Score=32.71 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=57.0
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
++..|+.+|.+.+=..+.+.+++.|. .|++.|.++.. ..+.|.+.||.+..-... .. .+...|.||++.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~----~~~~l~~~gi~~~~~~~~-~~-~~~~~d~vV~Sp--- 82 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC--DVVVADDNETA----RHKLIEVTGVADISTAEA-SD-QLDSFSLVVTSP--- 82 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC--EEEEECCChHH----HHHHHHhcCcEEEeCCCc-hh-HhcCCCEEEeCC---
Confidence 45679999988776666666666665 88999965432 223345568877543111 11 235677776643
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
| |- =+.+.-..|+..++||+==.+
T Consensus 83 ---g-i~---~~~p~~~~a~~~gi~v~~~~e 106 (473)
T PRK00141 83 ---G-WR---PDSPLLVDAQSQGLEVIGDVE 106 (473)
T ss_pred ---C-CC---CCCHHHHHHHHCCCceeeHHH
Confidence 2 11 134667778888888884333
No 352
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=33.88 E-value=5.2e+02 Score=29.16 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=49.5
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EML-RRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA-~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLG 600 (717)
+.|+|-+-+..+..++......|. +|++ +.|.+.|- .+. ..+...|+.+..+... .+-..+. +...|+|-
T Consensus 77 ~~v~~~sG~~Ai~~~l~all~pGD--~Vvv--~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~ 152 (405)
T PRK08776 77 GGVITATGMGAINLVLNALLQPGD--TLVV--PHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIE 152 (405)
T ss_pred ceEEEcCHHHHHHHHHHHHhCCCC--EEEE--ccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 345555545555444444444444 4444 35767662 233 3345678888887532 3333332 33344332
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.---..|.+.. -..|+-+|+.++++|+|
T Consensus 153 -~P~NPtG~v~d---l~~I~~la~~~gi~vIv 180 (405)
T PRK08776 153 -TPSNPLLRITD---LRFVIEAAHKVGALTVV 180 (405)
T ss_pred -CCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 11122333322 24567778999988776
No 353
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=33.82 E-value=4.5e+02 Score=28.82 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=54.8
Q ss_pred EEEecCchHHHHHHHHH--HHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc----h------HHHHHhh---h
Q psy17541 529 ILTYGCSSLVEKILLTA--HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL----S------AVSYIMR---E 593 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A--~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D----S------AVsyiM~---~ 593 (717)
|+|.|.+..+..++... ...|. . +++++ |.+.+...+- ...|+.+..++. . ++-..+. .
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pGd--~-Vlv~~-P~y~~~~~~~--~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~ 171 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPDA--K-VWVSD-PTWPNHRAIF--EAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA 171 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCCC--e-EEECC-CCcccHHHHH--HHcCCcEEEEeccccccCccCHHHHHHHHHhCCC
Confidence 88999998766655332 23443 3 44444 7777764333 347887776642 1 2222221 1
Q ss_pred ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 594 VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 594 VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+++++=..-=-..|.++++-=--.++-+|+.|++.++.
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 234444332223445555555567788888999987764
No 354
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=33.74 E-value=4.3e+02 Score=29.89 Aligned_cols=103 Identities=17% Similarity=0.321 Sum_probs=57.2
Q ss_pred hccCCCeEEEecCc-hHHHHHHHHHHHcCCeeEEEEcCCCCchhH-HHHHH-HHHhCCCcEEEEcchH---HHHHhh-hc
Q psy17541 522 KLANDDVILTYGCS-SLVEKILLTAHEKGTKFRVIIVDGSPWYEG-KEMLR-RLVKHQVDCSYVLLSA---VSYIMR-EV 594 (717)
Q Consensus 522 ~I~dGdvILTyg~S-StV~~vL~~A~e~Gk~FrVIVvESRP~~EG-r~lA~-~L~~~GI~vTyI~DSA---VsyiM~-~V 594 (717)
.|..|+-.+.++.+ .++...|......|.. |++.. ..+.| +.+.+ .|...||.++++.... +...+. ++
T Consensus 66 ~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~--iv~~~--~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t 141 (386)
T PF01053_consen 66 ALEGGEDALLFSSGMAAISAALLALLKPGDH--IVASD--DLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNT 141 (386)
T ss_dssp HHHT-SEEEEESSHHHHHHHHHHHHS-TTBE--EEEES--SSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTE
T ss_pred HhhcccceeeccchHHHHHHHHHhhcccCCc--eEecC--CccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccc
Confidence 34566666666554 3444555555555654 55433 34444 55555 5888999999997643 444444 45
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhCC-CcEEe
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAFN-VPVLA 632 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~-VPVyV 632 (717)
..|++=. . .| -.+--.=-..++-+||.+| ++|+|
T Consensus 142 ~~v~~Es--p-sN-P~l~v~Dl~~i~~~a~~~g~~~~vV 176 (386)
T PF01053_consen 142 KLVFLES--P-SN-PTLEVPDLEAIAKLAKEHGDILVVV 176 (386)
T ss_dssp EEEEEES--S-BT-TTTB---HHHHHHHHHHTTT-EEEE
T ss_pred eEEEEEc--C-CC-cccccccHHHHHHHHHHhCCceEEe
Confidence 6665532 2 12 1222233456788999999 88887
No 355
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=33.63 E-value=1.8e+02 Score=29.97 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEc-chHHHHHhhh
Q psy17541 540 KILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVL-LSAVSYIMRE 593 (717)
Q Consensus 540 ~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~-DSAVsyiM~~ 593 (717)
..+.....+|++ -|+++-+-|.+-| ..+++.|.+.|+++.+|+ .+++.+++..
T Consensus 71 ~~i~~~~~~g~~-V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~ 126 (249)
T PRK06136 71 RLLVDYARKGKV-VVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAY 126 (249)
T ss_pred HHHHHHHHCCCe-EEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHH
Confidence 334333345664 3345678887764 577788888899999888 6676666653
No 356
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=33.63 E-value=4.2e+02 Score=26.37 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=57.1
Q ss_pred CCCeEEEecCch------HHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCc--EEEEc-chHHHHHhhhcc
Q psy17541 525 NDDVILTYGCSS------LVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVD--CSYVL-LSAVSYIMREVS 595 (717)
Q Consensus 525 dGdvILTyg~SS------tV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~--vTyI~-DSAVsyiM~~Vd 595 (717)
+..+|+..|.-. .+..++....+....++++++-..+..+ .+...+.+.|++ +.+.. ...+..+|..+|
T Consensus 177 ~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~--~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 254 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPERE--ALEALIKELGLEDRVILLGFTKNIEEYYAKAS 254 (348)
T ss_pred CCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHH--HHHHHHHHcCCCCeEEEcCCcchHHHHHHhCC
Confidence 345677776532 2344444444445677777776554432 233344556654 33333 267888999999
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
.+++.... .| .-...+=|-.+|+||++-
T Consensus 255 ~~i~ps~~---e~-------~~~~~~Ea~a~G~Pvi~~ 282 (348)
T cd03820 255 IFVLTSRF---EG-------FPMVLLEAMAFGLPVISF 282 (348)
T ss_pred EEEeCccc---cc-------cCHHHHHHHHcCCCEEEe
Confidence 98876432 22 223467778899999873
No 357
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=33.54 E-value=2.6e+02 Score=31.06 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=66.9
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCC---------Cch-----hH----HHHHHHHHhC-
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGS---------PWY-----EG----KEMLRRLVKH- 575 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESR---------P~~-----EG----r~lA~~L~~~- 575 (717)
++..+...+.+ ..||.+|.+.+=..++..+...|.. +++++|-. -.+ -| ..++++|.+.
T Consensus 125 ~g~~~q~~l~~-~~VlvvG~GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 125 VGEEGQRRLLE-ARVLLIGAGGLGSPAALYLAAAGVG-TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred cCHHHHHHHhc-CcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 55556667744 5788889987655666666666753 34444422 111 12 2456666654
Q ss_pred -CCcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 576 -QVDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 576 -GI~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
++.++.+. ...+..++.++|.||...|.+-. -+.+.-+|+.+++||+.+.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~---------r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPT---------RYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 35554443 23455677899999988876532 2457788999999998763
No 358
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=33.43 E-value=4.2e+02 Score=27.81 Aligned_cols=102 Identities=14% Similarity=0.046 Sum_probs=49.0
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHH-HHHhCCCcEEEEcc-------hHHHHHhh----
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLR-RLVKHQVDCSYVLL-------SAVSYIMR---- 592 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~-~L~~~GI~vTyI~D-------SAVsyiM~---- 592 (717)
+.++|+|.|-+..+..+|......| -.|++.+ |.+.....+. ...-.|+++..+.. ..+...+.
T Consensus 47 ~~~~~~~~~gt~a~~~~~~~l~~~g--d~v~~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~ 122 (338)
T cd06502 47 KEAALFVPSGTAANQLALAAHTQPG--GSVICHE--TAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDD 122 (338)
T ss_pred CCeEEEecCchHHHHHHHHHhcCCC--CeEEEec--CcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhccCC
Confidence 4567777776665444444433333 3566543 3333211111 11116887777743 23333333
Q ss_pred ----hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 ----EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 ----~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+...|++- .....|+++..---..++-+|+.++++|+|
T Consensus 123 ~~~~~~~~v~l~--~p~n~g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 123 IHFPPPSLVSLE--NTTEGGTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred CcCCcceEEEEE--eecCCccccCHHHHHHHHHHHHHcCCeEee
Confidence 22233322 122235555333334466778888888876
No 359
>PRK08068 transaminase; Reviewed
Probab=33.35 E-value=3.9e+02 Score=29.24 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=55.4
Q ss_pred ccCC-CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH-------HHHHh---
Q psy17541 523 LAND-DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA-------VSYIM--- 591 (717)
Q Consensus 523 I~dG-dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA-------VsyiM--- 591 (717)
+..+ ++++|.|.+..+..++......|. .|+| + .|.+.+...+ +...|+.+..++... +..+.
T Consensus 91 ~~~~~~i~it~G~~~~l~~~~~~~~~~gd--~vlv-~-~P~y~~~~~~--~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~ 164 (389)
T PRK08068 91 LDPETEVAILFGGKAGLVELPQCLMNPGD--TILV-P-DPGYPDYLSG--VALARAQFETMPLIAENNFLPDYTKIPEEV 164 (389)
T ss_pred CCCCccEEEcCCcHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHH--HHhcCCEEEEeecccccCCCCCHHHHHHhc
Confidence 4444 688899988876655444333343 3444 3 3777655433 345788877776421 11222
Q ss_pred -hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 592 -REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 592 -~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
.++..|++- .-=-..|.++++-=-..++-+|+.+++.+++ =|.|
T Consensus 165 ~~~~~~v~l~-~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~-Deay 209 (389)
T PRK08068 165 AEKAKLMYLN-YPNNPTGAVATKAFFEETVAFAKKHNIGVVH-DFAY 209 (389)
T ss_pred cccceEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE-ehhh
Confidence 234444442 1002334444433334666678888885553 3444
No 360
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.29 E-value=1.6e+02 Score=30.53 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=52.6
Q ss_pred EcCCCCchhHHHHHHHHHhCCCcEEEEcc---hHHHHH---hhhccEEEEceeeEecC-----------CCeecccchHH
Q psy17541 556 IVDGSPWYEGKEMLRRLVKHQVDCSYVLL---SAVSYI---MREVSKVIIGAHALLSN-----------GAVMSRAGTAQ 618 (717)
Q Consensus 556 VvESRP~~EGr~lA~~L~~~GI~vTyI~D---SAVsyi---M~~VdkVLLGAdaVlaN-----------G~VvNKiGT~~ 618 (717)
|+-..+..+...+++.|.+.||++.-|+. .++-.+ -.+.+-++|||-.|+.- ..+++..-.-.
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~ 88 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQE 88 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHH
Confidence 45556677788999999999987655553 333322 23566799999887642 24566666677
Q ss_pred HHHHHHhCCCcEEe
Q psy17541 619 VSLVARAFNVPVLA 632 (717)
Q Consensus 619 VALaAK~~~VPVyV 632 (717)
+.-.|+++++|++-
T Consensus 89 vi~~a~~~~i~~iP 102 (201)
T PRK06015 89 LLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHcCCCEeC
Confidence 77778888888774
No 361
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=33.24 E-value=4.7e+02 Score=29.05 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=67.8
Q ss_pred HHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCC---------c-h------hH----HHHHHHHH
Q psy17541 514 AICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSP---------W-Y------EG----KEMLRRLV 573 (717)
Q Consensus 514 ~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP---------~-~------EG----r~lA~~L~ 573 (717)
.|+..+.++|.+ ..||..|.+.+=-.++......|.. ++.++|..- . + .| ..+++.|.
T Consensus 13 ~~G~~~Q~~L~~-~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~ 90 (339)
T PRK07688 13 PIGEEGQQKLRE-KHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLE 90 (339)
T ss_pred hcCHHHHHHhcC-CcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHH
Confidence 366677777755 6788899886644555555555753 555555431 0 0 02 12345565
Q ss_pred hC--CCcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 574 KH--QVDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 574 ~~--GI~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+. .|.++.+. ...+..++.++|.||.+.|..- --+.+.-+|..+++|++.++
T Consensus 91 ~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~---------~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 91 EINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFE---------TRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHH---------HHHHHHHHHHHhCCCEEEEe
Confidence 44 35555443 2345566888999999877442 24578888999999998644
No 362
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=33.17 E-value=1.8e+02 Score=29.65 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=52.6
Q ss_pred EecCchHHHHHHHHHHHcCCeeEEEEc---CCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEec
Q psy17541 531 TYGCSSLVEKILLTAHEKGTKFRVIIV---DGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLS 606 (717)
Q Consensus 531 Tyg~SStV~~vL~~A~e~Gk~FrVIVv---ESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVla 606 (717)
..+.+|--+.-|+.. .|..|.|+-. |.-+..+ -..++.+|+...-. ++... .-+.++||||.|..
T Consensus 6 ILAS~SprR~elL~~--~g~~f~v~~~~idE~~~~~~~p~~~~~~lA~~Ka~-------~v~~~--~~~~~vI~aDTvV~ 74 (183)
T TIGR00172 6 ILASQSPRRKELLEE--LGISFEQIVSEFDEKSLKTTSPRELVYRLAKEKAQ-------AVAEL--LADALIIGADTVVI 74 (183)
T ss_pred EEeCCCHHHHHHHHH--CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHh--CCCCEEEEeCeEEE
Confidence 344444444444433 3888998843 4332222 25666666653211 11111 13569999999766
Q ss_pred -CCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 607 -NGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 607 -NG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
||.++.|-.+..-| |+-...|....|
T Consensus 75 ~~g~ilgKP~~~~eA~~~L~~lsG~~h~V 103 (183)
T TIGR00172 75 LDGEIYGKPKDKEEAAEFLRKLSGQEHEV 103 (183)
T ss_pred ECCEEecCCCCHHHHHHHHHHhCCCCcEE
Confidence 99999999998766 555555554433
No 363
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=33.15 E-value=1.4e+02 Score=29.40 Aligned_cols=62 Identities=18% Similarity=0.373 Sum_probs=41.3
Q ss_pred EEecCchHHHHHH--HHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHh--CCCcEEEEc-chHHHHHhhh
Q psy17541 530 LTYGCSSLVEKIL--LTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVK--HQVDCSYVL-LSAVSYIMRE 593 (717)
Q Consensus 530 LTyg~SStV~~vL--~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~--~GI~vTyI~-DSAVsyiM~~ 593 (717)
+...+... ...+ ......|++ -|+++-+-|.+-| ..+++.|.+ .||++.+|+ .+++.+++.+
T Consensus 56 ~~~~~~~~-~~~i~~~~~~~~g~~-V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~ 124 (210)
T PF00590_consen 56 LEESYDEI-AEIIEAIEAAKEGKD-VVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAAR 124 (210)
T ss_dssp EHHHHHHH-HHHHHHHHHHHTTSE-EEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHH
T ss_pred hhhhhhHH-HHHHHHHHHHhccCC-EEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHH
Confidence 33334444 3444 344456666 4455588898876 688889999 999999999 6777777664
No 364
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=33.05 E-value=1.9e+02 Score=32.87 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=60.1
Q ss_pred CCeEEEecCchHHHHHHHH-HHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 526 DDVILTYGCSSLVEKILLT-AHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~-A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
...||+.|-+..|-.-|.. ..+.| .+|++++.........+ ..+.. ...+.++....+...+.++|.||--|-..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G--~~V~~ldr~~~~~~~~~-~~~~~-~~~~~~~~~Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG--DEVIVIDNFFTGRKENL-VHLFG-NPRFELIRHDVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCccHhHh-hhhcc-CCceEEEECccccccccCCCEEEECceec
Confidence 3579999888776655554 44444 57777764321111111 11211 12344444333333455788887766322
Q ss_pred ecCCC--------eecccchHHHHHHHHhCCCcEEecccC
Q psy17541 605 LSNGA--------VMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 605 laNG~--------VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
..... -.|-.||..+.-+|+.+++.|+++.-+
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~ 235 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTS 235 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcH
Confidence 11111 167889999999999999987766544
No 365
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=33.05 E-value=2.1e+02 Score=32.46 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=53.7
Q ss_pred CCCeEEEecCchHHHH-HHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceee
Q psy17541 525 NDDVILTYGCSSLVEK-ILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 525 dGdvILTyg~SStV~~-vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAda 603 (717)
.+..|+.+|.+..=.. +.+.+++.| .+|++.|.++.. ....|.+.||.+.+ . .... .+..+|.|+++...
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G--~~V~~~D~~~~~----~~~~l~~~gi~~~~-~-~~~~-~~~~~d~vv~spgi 76 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLG--YKVSGSDLKESA----VTQRLLELGAIIFI-G-HDAE-NIKDADVVVYSSAI 76 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCC--CeEEEECCCCCh----HHHHHHHCCCEEeC-C-CCHH-HCCCCCEEEECCCC
Confidence 4567888877654344 233344334 679999998764 23458888988765 2 2222 33568888776422
Q ss_pred EecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 604 LLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 604 VlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
= . +.+.-..|+.+++||+--
T Consensus 77 ~-~---------~~~~~~~a~~~~i~i~~~ 96 (461)
T PRK00421 77 P-D---------DNPELVAARELGIPVVRR 96 (461)
T ss_pred C-C---------CCHHHHHHHHCCCcEEeH
Confidence 1 1 234556677778887743
No 366
>PRK08462 biotin carboxylase; Validated
Probab=32.92 E-value=81 Score=35.45 Aligned_cols=80 Identities=16% Similarity=0.076 Sum_probs=46.9
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCch--hHHHHHHHHHhCCCc---EEEEcchHHHHHhh--hccEEEE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWY--EGKEMLRRLVKHQVD---CSYVLLSAVSYIMR--EVSKVII 599 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~--EGr~lA~~L~~~GI~---vTyI~DSAVsyiM~--~VdkVLL 599 (717)
..||..+.+.....+++.|.+.|. +|+++.+.+.. .+..+|-+....|-. -.|+-..++-.+.. ++|.|+-
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G~--~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMGK--EAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 479999999998999999988774 57777665544 333333221111111 13332234444433 5888888
Q ss_pred ceeeEecCC
Q psy17541 600 GAHALLSNG 608 (717)
Q Consensus 600 GAdaVlaNG 608 (717)
|.+.+..|+
T Consensus 83 g~g~lse~~ 91 (445)
T PRK08462 83 GYGFLSENQ 91 (445)
T ss_pred CCCccccCH
Confidence 876444443
No 367
>PRK07340 ornithine cyclodeaminase; Validated
Probab=32.92 E-value=3.2e+02 Score=29.63 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=56.4
Q ss_pred HHHHHHhhcc--CCCeEEEecCchHHHHHHHHHHH-cCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHh
Q psy17541 515 ICMFFHNKLA--NDDVILTYGCSSLVEKILLTAHE-KGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIM 591 (717)
Q Consensus 515 Ia~~A~e~I~--dGdvILTyg~SStV~~vL~~A~e-~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM 591 (717)
++..+.+++. +..+|+.+|.+..-...+..... .+. -+|+|.+ |-...-..++.++...|+++. + ..+..++
T Consensus 112 ~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~-~~v~v~~-r~~~~a~~~a~~~~~~~~~~~-~--~~~~~av 186 (304)
T PRK07340 112 VSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPV-RRVWVRG-RTAASAAAFCAHARALGPTAE-P--LDGEAIP 186 (304)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-CEEEEEc-CCHHHHHHHHHHHHhcCCeeE-E--CCHHHHh
Confidence 3344455553 55789999998765555544432 222 2455554 333334678888887777766 2 2234445
Q ss_pred hhccEEEEce---ee----EecCCCeecccchH
Q psy17541 592 REVSKVIIGA---HA----LLSNGAVMSRAGTA 617 (717)
Q Consensus 592 ~~VdkVLLGA---da----VlaNG~VvNKiGT~ 617 (717)
.++|.|+... +- .+.-|..+|-+|++
T Consensus 187 ~~aDiVitaT~s~~Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 EAVDLVVTATTSRTPVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred hcCCEEEEccCCCCceeCccCCCCCEEEecCCC
Confidence 7888887521 11 24566667777754
No 368
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=32.71 E-value=5.4e+02 Score=26.05 Aligned_cols=34 Identities=3% Similarity=-0.168 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVII 599 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLL 599 (717)
...++.+.+.|+++..|+-..-+.+-+.+|.+|.
T Consensus 128 i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~ 161 (192)
T PRK00414 128 IKAIEAARAKGMKVITLTGKDGGKMAGLADIEIR 161 (192)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 4677778888888888886665666666787774
No 369
>PRK06091 membrane protein FdrA; Validated
Probab=32.55 E-value=2.9e+02 Score=33.13 Aligned_cols=136 Identities=9% Similarity=0.080 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCc
Q psy17541 490 TQARLRLKEVIATYIHEQVDMAGN-------AICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPW 562 (717)
Q Consensus 490 ee~Ke~Lie~IdefI~ErI~~A~e-------~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~ 562 (717)
+++.+.+...+++|+...-..... +-...+.+.+.+.|..+..--...|...+..|.+.|+. -|++.+.-|.
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G~~-viI~S~gfg~ 153 (555)
T PRK06091 75 AGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNLN-VMMFSDNVTL 153 (555)
T ss_pred hHHHHHHHHHHHHHhhccccccCCcCCCcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcCCe-EEEEcCCCCH
Confidence 556677778888877532100001 11224455566668888877888889999999998843 3444454432
Q ss_pred hhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCC--CeecccchHHHHHH--HHhCCCcEE
Q psy17541 563 YEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNG--AVMSRAGTAQVSLV--ARAFNVPVL 631 (717)
Q Consensus 563 ~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG--~VvNKiGT~~VALa--AK~~~VPVy 631 (717)
..-+.+.....+.|+.+ +-++...+. +..+..-|. .++.-| ++++..||...+++ +...|+-|-
T Consensus 154 ~~E~~L~e~Ar~~Glrv-mGPNCG~~~-i~gl~lsF~---~~~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S 221 (555)
T PRK06091 154 EDEIRLKTRAREKGLLV-MGPDCGTAM-IAGTPLAFA---NVMPEGNIGVIGASGTGIQELCSQIALAGEGIT 221 (555)
T ss_pred HHHHHHHHHHHHcCCEE-ECCCChhhh-hcCCccccc---CCCCCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 22234444455566532 334442222 333333332 123456 47999998877765 666676664
No 370
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=32.52 E-value=3.2e+02 Score=28.71 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=69.0
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEE----EEcCCC--Cchh------HHHHHHHHHhCCCcEEEEc-----------
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRV----IIVDGS--PWYE------GKEMLRRLVKHQVDCSYVL----------- 583 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrV----IVvESR--P~~E------Gr~lA~~L~~~GI~vTyI~----------- 583 (717)
..||+||-++.+...+... |...+. .|++.. +..+ -..+...|.++|++..-++
T Consensus 30 ~~VlVHGgg~~i~~~~~~~---gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv~~l~~~g~~a~~l~~~~~~a~~~~~ 106 (248)
T cd04252 30 YPIVVHGAGPQLNEELEAA---GVEPEYVDGLRVTDPETLAVARKVFLEENLKLVEALERNGARARPITSGVFEAEYLDK 106 (248)
T ss_pred cEEEEeCCCHHHHHHHHHc---CCCcEeeCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCceEEEEECcC
Confidence 5799999999988777654 322221 122211 1111 1346677778887644332
Q ss_pred -------------chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCc-EEeccc
Q psy17541 584 -------------LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVP-VLAACE 635 (717)
Q Consensus 584 -------------DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VP-VyV~cE 635 (717)
-..+-.++..-..+++..+++..+|.++|--|=..++.+|++.+.- ++.++.
T Consensus 107 ~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd 172 (248)
T cd04252 107 DKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE 172 (248)
T ss_pred ccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence 1234445555567888888988999999999999999999999864 555554
No 371
>PRK06460 hypothetical protein; Provisional
Probab=32.41 E-value=5.6e+02 Score=28.40 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=29.8
Q ss_pred HHHhCCCcEEEEcch---HHHHHh-hhccEEEEceeeE-ecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 571 RLVKHQVDCSYVLLS---AVSYIM-REVSKVIIGAHAL-LSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 571 ~L~~~GI~vTyI~DS---AVsyiM-~~VdkVLLGAdaV-laNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.+...|+.+.++... .+..+. ++...|+| +.. -..|.++.. -.|+-+|+.++++|+|
T Consensus 104 ~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l--~sp~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 104 YLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFV--ENITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred HHHhhCcEEEEECCCCHHHHHHhcCCCceEEEE--ECCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 345567777666422 122222 23455655 222 224555543 2467778888887765
No 372
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=32.36 E-value=4.9e+02 Score=25.45 Aligned_cols=38 Identities=5% Similarity=-0.133 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEce
Q psy17541 564 EGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 564 EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
+=..+++.+.+.|+++..|++..-+.+-+.+|.+|.-.
T Consensus 116 ~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 116 NVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 34577888888999999999887777777788877543
No 373
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=32.33 E-value=2.9e+02 Score=27.50 Aligned_cols=104 Identities=10% Similarity=0.068 Sum_probs=53.5
Q ss_pred CeEEEecCchHHHHHHHHH-HHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-c----hHHHHHh-------hh
Q psy17541 527 DVILTYGCSSLVEKILLTA-HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-L----SAVSYIM-------RE 593 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A-~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-D----SAVsyiM-------~~ 593 (717)
.+||+.|.++-|-..|... .++|- +|+++..++. ....+...|...+.++.++. | .++..++ ..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEA-GAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHH-HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3677888776655544433 33443 7887766542 23445555655554444332 1 2232222 34
Q ss_pred ccEEEEceeeEecCCCe-------------ecccchHHHHHHH----HhCCCcEEecc
Q psy17541 594 VSKVIIGAHALLSNGAV-------------MSRAGTAQVSLVA----RAFNVPVLAAC 634 (717)
Q Consensus 594 VdkVLLGAdaVlaNG~V-------------vNKiGT~~VALaA----K~~~VPVyV~c 634 (717)
+|.||..|-.. ..+.. .|-.|+..+.-.+ +..++..+|..
T Consensus 79 ~d~vi~~a~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ 135 (255)
T TIGR01963 79 LDILVNNAGIQ-HVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINI 135 (255)
T ss_pred CCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 67777776432 11111 3666776666554 44555544443
No 374
>PRK08618 ornithine cyclodeaminase; Validated
Probab=32.33 E-value=2.9e+02 Score=30.14 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=56.0
Q ss_pred HHHhhcc--CCCeEEEecCchHHHHHHHHHHHcCCee-EEEEcCCCCchhHHHHHHHHHh-CCCcEEEEcchHHHHHhhh
Q psy17541 518 FFHNKLA--NDDVILTYGCSSLVEKILLTAHEKGTKF-RVIIVDGSPWYEGKEMLRRLVK-HQVDCSYVLLSAVSYIMRE 593 (717)
Q Consensus 518 ~A~e~I~--dGdvILTyg~SStV~~vL~~A~e~Gk~F-rVIVvESRP~~EGr~lA~~L~~-~GI~vTyI~DSAVsyiM~~ 593 (717)
.+.+++. +..+|+.+|.+..-...+...... ..+ +|.|.+ |-......++.+|.+ .|+++..+.+ ...++.+
T Consensus 117 la~~~la~~~~~~v~iiGaG~~a~~~~~al~~~-~~~~~v~v~~-r~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 192 (325)
T PRK08618 117 VATKYLAREDAKTLCLIGTGGQAKGQLEAVLAV-RDIERVRVYS-RTFEKAYAFAQEIQSKFNTEIYVVNS--ADEAIEE 192 (325)
T ss_pred HHHHHhcCCCCcEEEEECCcHHHHHHHHHHHhc-CCccEEEEEC-CCHHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhc
Confidence 3344442 567899999998766555443222 233 455554 433345677777764 4777665544 3445578
Q ss_pred ccEEEEce---e----eEecCCCeecccchH
Q psy17541 594 VSKVIIGA---H----ALLSNGAVMSRAGTA 617 (717)
Q Consensus 594 VdkVLLGA---d----aVlaNG~VvNKiGT~ 617 (717)
+|.|+... + ..+..|..++-+|++
T Consensus 193 aDiVi~aT~s~~p~i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 193 ADIIVTVTNAKTPVFSEKLKKGVHINAVGSF 223 (325)
T ss_pred CCEEEEccCCCCcchHHhcCCCcEEEecCCC
Confidence 99888743 1 233556666666664
No 375
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=32.32 E-value=3.8e+02 Score=30.95 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=52.2
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-ch---------HHHHHh-
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-LS---------AVSYIM- 591 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-DS---------AVsyiM- 591 (717)
+...++|+|.|.+..+..++......|. +|+|. .|.+.+...+.. ..|..+..+. |. .+-..+
T Consensus 206 ~~~~~I~it~G~~eal~~~~~~l~~~Gd--~Vli~--~P~y~~y~~~~~--~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 279 (517)
T PRK13355 206 VDVDDIYTGNGVSELINLSMSALLDDGD--EVLIP--SPDYPLWTACVN--LAGGTAVHYRCDEQSEWYPDIDDIRSKIT 279 (517)
T ss_pred CChhHEEEeCcHHHHHHHHHHHhCCCCC--EEEEc--CCCCcCHHHHHH--HCCCEEEEeecCcccCCCCCHHHHHHhcC
Confidence 3445788888888876666554443343 45553 477766544333 3576655543 21 122222
Q ss_pred hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 592 REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 592 ~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++...|+|- .-=-.-|.++.+-==..++-+|+.|++.|++
T Consensus 280 ~~~k~i~i~-nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~ 319 (517)
T PRK13355 280 SRTKAIVII-NPNNPTGALYPREVLQQIVDIAREHQLIIFS 319 (517)
T ss_pred cCceEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 233333332 1101124444433335566778888886554
No 376
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=32.31 E-value=3.7e+02 Score=27.46 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=38.8
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS 585 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS 585 (717)
.+.+|++.+.+.....+-..|...|.++.|++.+..| ....+.|...|..|..+...
T Consensus 49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~----~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGAS----PEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHCCCEEEEECCC
Confidence 3578888888777777667777778888888776654 23345566667777666543
No 377
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=32.25 E-value=4.7e+02 Score=28.86 Aligned_cols=103 Identities=11% Similarity=0.095 Sum_probs=50.5
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHH--HHHHHhCCCcE----EEEc-ch-------HHHHH
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEM--LRRLVKHQVDC----SYVL-LS-------AVSYI 590 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~l--A~~L~~~GI~v----TyI~-DS-------AVsyi 590 (717)
..++|+|-|.+..+..++......+..-.+||++ ...+-.... ...+...|+.+ .++. +. .+-.+
T Consensus 86 ~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~-~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~ 164 (406)
T TIGR01814 86 EDEVVVMNTLTINLHLLLASFYKPTPKRYKILLE-AKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDT 164 (406)
T ss_pred CCcEEEeCCchHHHHHHHHHhcCCcCCccEEEec-CCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHH
Confidence 4468888887776555555443333211234332 223333222 22445678876 3443 21 33333
Q ss_pred hh----hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 591 MR----EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 591 M~----~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+. +...|+ ...+....+++.. -..|+-+|+.+|++|+|
T Consensus 165 ~~~~~~~t~lv~--~~~v~~~tG~~~~--~~~i~~~~~~~g~~~~v 206 (406)
T TIGR01814 165 IEKNGDDIAVIL--LSGVQYYTGQLFD--MAAITRAAHAKGALVGF 206 (406)
T ss_pred HHhcCCCeEEEE--EeccccccceecC--HHHHHHHHHHcCCEEEE
Confidence 32 222222 2223333233333 34477889999998887
No 378
>PRK09191 two-component response regulator; Provisional
Probab=32.25 E-value=3.8e+02 Score=26.95 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHH---cCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch---HHHHHhh-hccEEEEceeeEecCC
Q psy17541 536 SLVEKILLTAHE---KGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS---AVSYIMR-EVSKVIIGAHALLSNG 608 (717)
Q Consensus 536 StV~~vL~~A~e---~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS---AVsyiM~-~VdkVLLGAdaVlaNG 608 (717)
++|..-+.+|.+ .....+|+++|..|.... .+...|...|+.+..+.++ ++..+.. ..|.||+..+ +.+|
T Consensus 119 ~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~~-~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~~ 195 (261)
T PRK09191 119 AEAEALLDDARAEIARQVATRVLIIEDEPIIAM-DLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LADG 195 (261)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEcCcHHHHH-HHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCCC
Confidence 456666666653 234457888887665432 3556677788887733332 3333332 4889988764 2221
Q ss_pred CeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 609 AVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 609 ~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
.-|.-.+..+....++|+++++.
T Consensus 196 ----~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 196 ----SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred ----CCHHHHHHHHHHhCCCCEEEEeC
Confidence 11333344444444899999876
No 379
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=32.23 E-value=3.5e+02 Score=25.57 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=30.6
Q ss_pred eEEEecCchHHHHHHHHHHH----cCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEE
Q psy17541 528 VILTYGCSSLVEKILLTAHE----KGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYV 582 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e----~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI 582 (717)
+|.||..+..+..+|..... ....|+|+|+|.....+....++.+....-++.++
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i 60 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVI 60 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEE
Confidence 46677766665555443322 13457777777666555555666655443344444
No 380
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=32.20 E-value=3e+02 Score=31.50 Aligned_cols=139 Identities=11% Similarity=0.061 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHH---HHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy17541 451 RLGPAMSYLNKCRPHSVSMLNAVK---HFKSHLTQL--PNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLAN 525 (717)
Q Consensus 451 ~Lk~ai~~L~~aRPtsVSmgNAIR---~Lk~~I~~l--~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~d 525 (717)
.+..++..|...-|+...+|...- .....-+.- +..... ..+++|+.+... . ..+.......=..
T Consensus 71 ~~~~a~~~~~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i--------~~l~r~~~~~~~-~-~~~~~~~~~~~~~ 140 (467)
T TIGR01318 71 RIDEAAELSHQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTI--------GNLERYITDTAL-A-MGWRPDLSHVVPT 140 (467)
T ss_pred CHHHHHHHHHHhCCchHhhcccCCCCCChHHhCcCCCCCCCccH--------HHHHHHHHHHHH-H-hCCCCCCCCcCCC
Confidence 456677778888898888886652 333322221 111222 233444422100 0 0000000000125
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH----------------HHHHHHHhCCCcEEEE----cch
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK----------------EMLRRLVKHQVDCSYV----LLS 585 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr----------------~lA~~L~~~GI~vTyI----~DS 585 (717)
|..|+.+|.+..=+.+...+...| +.|+|.|..|...|. .....|.+.||++.+= .+-
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 218 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI 218 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence 788999999876555555555555 567778877643221 2345567789875431 121
Q ss_pred HHHHHhhhccEEEEce
Q psy17541 586 AVSYIMREVSKVIIGA 601 (717)
Q Consensus 586 AVsyiM~~VdkVLLGA 601 (717)
.+..+....|.||++.
T Consensus 219 ~~~~~~~~~D~vilAt 234 (467)
T TIGR01318 219 SLDDLLEDYDAVFLGV 234 (467)
T ss_pred CHHHHHhcCCEEEEEe
Confidence 2333344689998854
No 381
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=32.15 E-value=2.3e+02 Score=25.47 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=25.8
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
++|.+++|+..-..... --.|+ .---+.++..+||+|+=
T Consensus 113 ~adliV~G~~g~~~l~~--~llGs-vs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 113 DADLIVVGSRGRSGLSR--LLLGS-VAEKVLRHAPCPVLVVR 151 (154)
T ss_pred CCCEEEECCCCCccccc--eeeeh-hHHHHHhcCCCCEEEEc
Confidence 59999999974333222 23553 34466778899999874
No 382
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.12 E-value=2.2e+02 Score=28.34 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=53.3
Q ss_pred CCeEEEecCchHHHHHH-HHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEE-cc----hHHHHHhhh------
Q psy17541 526 DDVILTYGCSSLVEKIL-LTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYV-LL----SAVSYIMRE------ 593 (717)
Q Consensus 526 GdvILTyg~SStV~~vL-~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI-~D----SAVsyiM~~------ 593 (717)
|.+||+.|-++-+-..| +...+.| .+|+++..|.......++..+...|-.+.++ .| ..+..++.+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG--YDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45777777766554443 4444444 4666666666555667777787766555543 23 234444443
Q ss_pred -ccEEEEceeeEecCCCe-------------ecccchHHHHHHHHh
Q psy17541 594 -VSKVIIGAHALLSNGAV-------------MSRAGTAQVSLVARA 625 (717)
Q Consensus 594 -VdkVLLGAdaVlaNG~V-------------vNKiGT~~VALaAK~ 625 (717)
+|.||..|-. ...+.+ +|..|+..++-.+..
T Consensus 82 ~id~vi~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 126 (250)
T PRK08063 82 RLDVFVNNAAS-GVLRPAMELEESHWDWTMNINAKALLFCAQEAAK 126 (250)
T ss_pred CCCEEEECCCC-CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5666655421 111111 566777777766554
No 383
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=32.06 E-value=1.7e+02 Score=31.37 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=57.9
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHH-hCCCcEEEEc---c-hHHHHHhhhccEEEE-ce
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLV-KHQVDCSYVL---L-SAVSYIMREVSKVII-GA 601 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~-~~GI~vTyI~---D-SAVsyiM~~VdkVLL-GA 601 (717)
.||+.|-+..|-..|..+......++|+.++-++. . ...|. ..+++....- | ..+..++..+|.||= +|
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~----~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa 77 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD----R-LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVA 77 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH----H-HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECcc
Confidence 58888887776666665543222367887763321 1 12232 2344433321 1 234556778888773 22
Q ss_pred eeEe----cCCC---eecccchHHHHHHHHhCCCcEEecccC
Q psy17541 602 HALL----SNGA---VMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 602 daVl----aNG~---VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
-... .+-. -+|..||..+.-+|+.++..|+.+.-.
T Consensus 78 ~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~ 119 (347)
T PRK11908 78 IATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred cCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 1111 1111 125679999999999998887776554
No 384
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=31.99 E-value=59 Score=34.46 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=35.7
Q ss_pred HhhccCCCeEEEecCc----hHHHHHHHHHHHcCCeeEEEEcCCCCchhHH----HHHHHHHhCCCc
Q psy17541 520 HNKLANDDVILTYGCS----SLVEKILLTAHEKGTKFRVIIVDGSPWYEGK----EMLRRLVKHQVD 578 (717)
Q Consensus 520 ~e~I~dGdvILTyg~S----StV~~vL~~A~e~Gk~FrVIVvESRP~~EGr----~lA~~L~~~GI~ 578 (717)
.+++.+|+.|+.+.-| ++...+...| +.-..++|+|+||+=..-|. ..|.+|.+.|..
T Consensus 72 ~~l~~~~~~vi~i~iSs~lSgty~~a~~aa-~~~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~s 137 (275)
T TIGR00762 72 EKLLEEGDEVLSIHLSSGLSGTYQSARQAA-EMVDEAKVTVIDSKSASMGLGLLVLEAAKLAEEGKS 137 (275)
T ss_pred HHHHhCCCeEEEEEcCCchhHHHHHHHHHH-hhCCCCCEEEECChHHHHHHHHHHHHHHHHHHcCCC
Confidence 3345567766666444 4544443333 33234689999999876663 557778888875
No 385
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=31.98 E-value=1e+02 Score=35.65 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCcccCCCccccCCCCCcccccccCCCCCCCCCCCCCCCCCCc
Q psy17541 195 RDLVKAQREAKKAAKLAAKQKAKVKGDVTAPPDAVTQPESKQSEPSKAKSKSEPSKEANVQNKPAQGSQDTPKPGGPPAT 274 (717)
Q Consensus 195 ~~~~~~~r~~kk~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 274 (717)
++++++.+++||++|+.||..+..
T Consensus 330 ~~~~~~~~~~~~~~k~~~k~~~~~-------------------------------------------------------- 353 (429)
T PRK00247 330 AEIKKTRTAEKNEAKARKKEIAQK-------------------------------------------------------- 353 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------------
Q ss_pred cccCCCccCccccCcccCChhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccccCccCCCCCCCccCchhhhccCCCC
Q psy17541 275 LSNVDNKENVKSEGDEVKSKAQLKAERRAKQEQQRQAKAAALLEKTKTSNEKSMTKSKTEDSKPASEKSSKTEVLKSKDP 354 (717)
Q Consensus 275 ~~~~~~~~~~~~~~~~~kska~~kAERRA~QEaqRAaKa~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~k~~~~ 354 (717)
.-++++.-.+.+.+.++++-|..-++|+++.+++....-++........+.+.... .|...+-...+..+.
T Consensus 354 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~e~s~~~-~pq~~~~~a~~~~~~ 424 (429)
T PRK00247 354 --------RRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKGS-PPQVEATTTAEPNRE 424 (429)
T ss_pred --------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcccccccCCCCccccccccCCC-CCCCccccccCCCCC
Q ss_pred CCCC
Q psy17541 355 NVPS 358 (717)
Q Consensus 355 ~~p~ 358 (717)
.+|.
T Consensus 425 ~~~~ 428 (429)
T PRK00247 425 PSQE 428 (429)
T ss_pred CCCC
No 386
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=31.94 E-value=4.5e+02 Score=26.30 Aligned_cols=96 Identities=18% Similarity=0.191 Sum_probs=56.2
Q ss_pred CeEEEecCc------hHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCC--CcEEEEc-chHHHHHhhhccEE
Q psy17541 527 DVILTYGCS------SLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQ--VDCSYVL-LSAVSYIMREVSKV 597 (717)
Q Consensus 527 dvILTyg~S------StV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~G--I~vTyI~-DSAVsyiM~~VdkV 597 (717)
-+|+..|.- ..+..++....+.+..++++++-+.+..+-.... .+...+ -.+.++- ...+..+|..+|.+
T Consensus 189 ~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~adi~ 267 (359)
T cd03808 189 PVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL-EIEKLGLEGRVEFLGFRDDVPELLAAADVF 267 (359)
T ss_pred cEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH-HHHhcCCcceEEEeeccccHHHHHHhccEE
Confidence 466666642 2344445555444667888887766654432211 233333 2344443 45678889999998
Q ss_pred EEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 598 IIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 598 LLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
++.... -|.-...+=|-.+|+||++.
T Consensus 268 i~ps~~----------e~~~~~~~Ea~~~G~Pvi~s 293 (359)
T cd03808 268 VLPSYR----------EGLPRVLLEAMAMGRPVIAT 293 (359)
T ss_pred EecCcc----------cCcchHHHHHHHcCCCEEEe
Confidence 876432 12334566788899999984
No 387
>PRK00078 Maf-like protein; Reviewed
Probab=31.89 E-value=2.3e+02 Score=29.13 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=53.7
Q ss_pred ecCchHHHHHHHHHHHcCCeeEEEE---cCCCCc--hhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe-
Q psy17541 532 YGCSSLVEKILLTAHEKGTKFRVII---VDGSPW--YEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL- 605 (717)
Q Consensus 532 yg~SStV~~vL~~A~e~Gk~FrVIV---vESRP~--~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl- 605 (717)
.+.+|--+.-|+.. .|..|.|+. -|+.+. ..-..++.+|+...-. ++..-+..-+.++||||.|.
T Consensus 5 LAS~SprR~elL~~--~g~~f~v~~~~idE~~~~~~~~p~~~~~~lA~~KA~-------~v~~~~~~~~~lvI~aDTvV~ 75 (192)
T PRK00078 5 LASASERRQELLKR--ILEDFQVIVSDFDESSVPFKGNIESYVMNLAEGKAR-------SVSKKLDQESSIVIGCDTIVA 75 (192)
T ss_pred EeCCCHHHHHHHHh--CCCCeEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhcCCCCCEEEEeCeEEE
Confidence 44444434444333 388999884 344322 2235677777653211 12111112246999999977
Q ss_pred cCCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 606 SNGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 606 aNG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
-||-++.|-.+..-| |+-+..|....|
T Consensus 76 ~~g~ilgKP~~~eeA~~~L~~lsG~~h~V 104 (192)
T PRK00078 76 FNGKVLGKPKDEEDAFEMLKALSGNEHEV 104 (192)
T ss_pred ECCEEeCCCCCHHHHHHHHHHHCCCcEEE
Confidence 599999999988766 555556655444
No 388
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=31.81 E-value=4.7e+02 Score=29.03 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=50.6
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHHHH-HHhCCCcEEEEcc-hHHHHHhh-hccEEEEcee
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EMLRR-LVKHQVDCSYVLL-SAVSYIMR-EVSKVIIGAH 602 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA~~-L~~~GI~vTyI~D-SAVsyiM~-~VdkVLLGAd 602 (717)
.+|+|-|-..++..+| .+...|. +|++. ++.+.|. .+... +...|+.+++..| ..+...+. +...|++..
T Consensus 71 ~~v~~~sG~aAi~~~l-~~l~~GD--~VI~~--~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~TklV~les- 144 (364)
T PRK07269 71 YALATSSGMSAIVLAF-SVFPVGS--KVVAV--RDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIET- 144 (364)
T ss_pred eEEEeCCHHHHHHHHH-HHhCCCC--EEEEe--cCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHhcCcCceEEEEEC-
Confidence 4555555556655555 4555554 46654 5666664 22222 3334677777664 23444442 344443321
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 603 ALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 603 aVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
-.-..|.++ --..|+-+|+.+|++|+|
T Consensus 145 P~NPtg~~~---di~~I~~la~~~gi~vvv 171 (364)
T PRK07269 145 PTNPLMVEF---DIEKVAKLAHAKGAKVIV 171 (364)
T ss_pred CCCCCCeee---CHHHHHHHHHHcCCEEEE
Confidence 111123222 345677788999999887
No 389
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=31.76 E-value=1.9e+02 Score=29.74 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=42.3
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEE-cCCCCchhHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh--hc
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVII-VDGSPWYEGKEMLRRLVKHQVDCSYVLL----------SAVSYIMR--EV 594 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIV-vESRP~~EGr~lA~~L~~~GI~vTyI~D----------SAVsyiM~--~V 594 (717)
.||.-|.++....++....+.+....|.+ +--+|...+ .....+.|||+..+.. ..+...+. ++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~---~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG---LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchH---HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 46777778876666655544444455443 333344443 3445678999987652 23334443 58
Q ss_pred cEEEE-ceeeEe
Q psy17541 595 SKVII-GAHALL 605 (717)
Q Consensus 595 dkVLL-GAdaVl 605 (717)
|.+|+ |-..|+
T Consensus 82 D~iv~~~~~~ii 93 (200)
T PRK05647 82 DLVVLAGFMRIL 93 (200)
T ss_pred CEEEhHHhhhhC
Confidence 87766 434444
No 390
>PLN02591 tryptophan synthase
Probab=31.68 E-value=5.3e+02 Score=27.60 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=62.4
Q ss_pred eEEEecC---chHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-chH----HHHHhhhc-cEEE
Q psy17541 528 VILTYGC---SSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-LSA----VSYIMREV-SKVI 598 (717)
Q Consensus 528 vILTyg~---SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-DSA----VsyiM~~V-dkVL 598 (717)
++|||-+ ..-+++|+..+.+.|.. -|+|.|= |..|...+...+.++||+...+. .+. +..+.... .+|
T Consensus 82 ilm~Y~N~i~~~G~~~F~~~~~~aGv~-GviipDL-P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI- 158 (250)
T PLN02591 82 VLFTYYNPILKRGIDKFMATIKEAGVH-GLVVPDL-PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV- 158 (250)
T ss_pred EEEecccHHHHhHHHHHHHHHHHcCCC-EEEeCCC-CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE-
Confidence 5777744 33568899999888754 6777776 66888899999999999865544 333 34444433 232
Q ss_pred EceeeEecCCCeecccc-----hHHHHHHHHhCCCcEEecc
Q psy17541 599 IGAHALLSNGAVMSRAG-----TAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 599 LGAdaVlaNG~VvNKiG-----T~~VALaAK~~~VPVyV~c 634 (717)
-.|...|-.-.+.+ ...+..+-++.++||+|=.
T Consensus 159 ---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGF 196 (250)
T PLN02591 159 ---YLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGF 196 (250)
T ss_pred ---EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeC
Confidence 12222332222222 2336666777799999843
No 391
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=31.67 E-value=6.5e+02 Score=26.92 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=48.9
Q ss_pred CCCeEEEecCchHHHHHHHHHHH---c-CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch-----HHHHH---hh
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHE---K-GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS-----AVSYI---MR 592 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e---~-Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS-----AVsyi---M~ 592 (717)
+..+|+|.|.+.....++..+.. . +..-+|++.+ |.+-+ +...+...|+++.++... .+..+ +.
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~--~~h~~--~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~ 151 (373)
T TIGR03812 76 DAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPE--SAHFS--FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLID 151 (373)
T ss_pred CCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECC--cchHH--HHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHh
Confidence 44567777755544443333221 1 1224677655 33333 223345579888887632 12222 22
Q ss_pred hcc--EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 EVS--KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 ~Vd--kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+-+ .|++.. -...|.+. . --.|+-+|+.++++|+|
T Consensus 152 ~~~~~vv~~~~--~~~tG~~~-~--~~~i~~l~~~~~~~liv 188 (373)
T TIGR03812 152 DNTIGIVGIAG--TTELGQID-D--IEELSKIALENGIYLHV 188 (373)
T ss_pred hCcEEEEEECC--CCCCCccC-C--HHHHHHHHHHcCCeEEE
Confidence 212 222221 12344432 2 24577888999998887
No 392
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=31.64 E-value=2.1e+02 Score=30.98 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=12.2
Q ss_pred HHHHHHHHhCCCcEEe
Q psy17541 617 AQVSLVARAFNVPVLA 632 (717)
Q Consensus 617 ~~VALaAK~~~VPVyV 632 (717)
-.|+-+|++|++++++
T Consensus 190 ~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 190 DEICDLADKYDALVMV 205 (393)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4577788999987665
No 393
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=31.41 E-value=2.2e+02 Score=34.81 Aligned_cols=107 Identities=8% Similarity=0.116 Sum_probs=66.6
Q ss_pred HHHhhccCCCeEEEecCchHHHHHHHHHHHcCCe-eEEE----EcCCCCchh-----------HH----HHHHHHHhC--
Q psy17541 518 FFHNKLANDDVILTYGCSSLVEKILLTAHEKGTK-FRVI----IVDGSPWYE-----------GK----EMLRRLVKH-- 575 (717)
Q Consensus 518 ~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~-FrVI----VvESRP~~E-----------Gr----~lA~~L~~~-- 575 (717)
...++|. +..||..|.+.+=-.+++.....|.. +.++ |-.|.|..| |+ ..+++|.+.
T Consensus 331 l~~ekL~-~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP 409 (664)
T TIGR01381 331 LQLERYS-QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFP 409 (664)
T ss_pred hhHHHHh-cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCC
Confidence 3335554 47899999887644455555555754 3333 222444322 42 356667764
Q ss_pred CCcEEEEc-----------c----------hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 576 QVDCSYVL-----------L----------SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 576 GI~vTyI~-----------D----------SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+|+++-+. . ..+-.++.+.|.||.+.|..-+ =+.+..+|..+++|++-++
T Consensus 410 ~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~es---------R~L~n~~c~~~~kplI~aA 480 (664)
T TIGR01381 410 SIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREA---------RWLPTVLCSRHKKIAISAA 480 (664)
T ss_pred CcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHH---------HHHHHHHHHHhCCCEEEEE
Confidence 44444322 1 1356678899999999886543 3788899999999999765
No 394
>PRK10537 voltage-gated potassium channel; Provisional
Probab=31.39 E-value=5.1e+02 Score=29.52 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=57.0
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhh-----hccEEEEc
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMR-----EVSKVIIG 600 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~-----~VdkVLLG 600 (717)
.+.|+..|++..-..+.....+.|..+ +|+|... .......|+++.+- |..=...+. +++.|++-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~v--vVId~d~-------~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAV--TVIVPLG-------LEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCE--EEEECch-------hhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEc
Confidence 578999999998888877776666554 4444321 13344567776444 444333333 56666654
Q ss_pred eeeEecCCCeecccchHHHHHHHHhCC--CcEEecccCCc
Q psy17541 601 AHALLSNGAVMSRAGTAQVSLVARAFN--VPVLAACETHK 638 (717)
Q Consensus 601 AdaVlaNG~VvNKiGT~~VALaAK~~~--VPVyV~cEtyK 638 (717)
.+ +..-...+++.||+.+ +++++.+...+
T Consensus 310 t~---------dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~ 340 (393)
T PRK10537 310 RD---------NDADNAFVVLAAKEMSSDVKTVAAVNDSK 340 (393)
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCcEEEEECCHH
Confidence 32 2344567899999986 45666555443
No 395
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=31.32 E-value=3.2e+02 Score=26.79 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=42.2
Q ss_pred CCeEEEecCchHHHH-HHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-c----hHHHHHh-------h
Q psy17541 526 DDVILTYGCSSLVEK-ILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-L----SAVSYIM-------R 592 (717)
Q Consensus 526 GdvILTyg~SStV~~-vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-D----SAVsyiM-------~ 592 (717)
+.+||..|-|+-+-. +...+.+.| .+|+++-.++...-..+...+...|..+.++. | .++..++ .
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG--ANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 457777777765544 444455555 46766666655434455666666665655543 2 2222222 3
Q ss_pred hccEEEEcee
Q psy17541 593 EVSKVIIGAH 602 (717)
Q Consensus 593 ~VdkVLLGAd 602 (717)
.+|.||..|-
T Consensus 83 ~id~vi~~ag 92 (248)
T PRK05557 83 GVDILVNNAG 92 (248)
T ss_pred CCCEEEECCC
Confidence 5788887764
No 396
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=31.26 E-value=1.6e+02 Score=31.90 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=48.0
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEce
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
.|..|+.+|++.+-..++..++..| .+|+|.+.+|.. + ..+...|.. .+....+..++.++|.||..+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~--~---~~~~~~G~~--~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAH--L---ARITEMGLS--PFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHH--H---HHHHHcCCe--eecHHHHHHHhCCCCEEEECC
Confidence 5789999999998788888887666 488888888643 1 223345654 344456677788899988753
No 397
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=31.22 E-value=1.5e+02 Score=25.45 Aligned_cols=77 Identities=12% Similarity=0.232 Sum_probs=44.0
Q ss_pred EEEcCCCCchhHHHHHHHHHhCCC-cEEEEcchHHH-HHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHh-CCC
Q psy17541 554 VIIVDGSPWYEGKEMLRRLVKHQV-DCSYVLLSAVS-YIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA-FNV 628 (717)
Q Consensus 554 VIVvESRP~~EGr~lA~~L~~~GI-~vTyI~DSAVs-yiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~-~~V 628 (717)
|+|+|..|.... .+.+.|...|+ .|+.+.+..-+ ..+. ..|.+|++.+ .-..-|-..+..+.+. +++
T Consensus 1 Ilivd~~~~~~~-~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~-------~~~~~~~~~~~~i~~~~~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIRE-LLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLE-------LPDGDGLELLEQIRQINPSI 72 (112)
T ss_dssp EEEEESSHHHHH-HHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESS-------SSSSBHHHHHHHHHHHTTTS
T ss_pred cEEEECCHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEee-------eccccccccccccccccccc
Confidence 455566554432 34455667888 77766654322 2222 4777777632 2333455555555554 489
Q ss_pred cEEecccCCc
Q psy17541 629 PVLAACETHK 638 (717)
Q Consensus 629 PVyV~cEtyK 638 (717)
|+++++....
T Consensus 73 ~ii~~t~~~~ 82 (112)
T PF00072_consen 73 PIIVVTDEDD 82 (112)
T ss_dssp EEEEEESSTS
T ss_pred cEEEecCCCC
Confidence 9999986554
No 398
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=31.19 E-value=2e+02 Score=30.46 Aligned_cols=53 Identities=26% Similarity=0.275 Sum_probs=33.8
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEE
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSY 581 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTy 581 (717)
+..|++||++|.+.+-..++..|+..|.+ +|+++++.+.. +.++ .+.|.+..+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~-~vi~~~~~~~~--~~~~---~~~ga~~~i 213 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAE-DVIGVDPSPER--LELA---KALGADFVI 213 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHH--HHHH---HHhCCCEEE
Confidence 56799999999876555556666666643 48888876542 2333 445764433
No 399
>PRK00884 Maf-like protein; Reviewed
Probab=31.17 E-value=1.9e+02 Score=29.81 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=52.6
Q ss_pred ecCchHHHHHHHHHHHcCCeeEEEEc---CCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe-c
Q psy17541 532 YGCSSLVEKILLTAHEKGTKFRVIIV---DGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL-S 606 (717)
Q Consensus 532 yg~SStV~~vL~~A~e~Gk~FrVIVv---ESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl-a 606 (717)
.+.+|--+.-|+.. .|..|.|+.. |+-+..+ -..++.+|+...-. ++..- .-+.++||||.|. -
T Consensus 6 LAS~SprR~elL~~--~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~~--~~~~~VI~aDTvV~~ 74 (194)
T PRK00884 6 LASTSPYRRALLEK--LQLPFECAAPEVDETPRPGESPRQLVLRLAQEKAQ-------SLASR--YPDHLIIGSDQVCVL 74 (194)
T ss_pred EeCCCHHHHHHHHH--CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHhh--CCCCEEEEeCeEEEE
Confidence 44444334444333 3888998843 4332222 24566666553211 11111 1366999999976 5
Q ss_pred CCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 607 NGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 607 NG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
||.++.|-.+..-| |+-+..|....|
T Consensus 75 ~g~ilgKP~~~eeA~~~L~~lsG~~h~V 102 (194)
T PRK00884 75 DGEITGKPLTEENARAQLRKASGNIVTF 102 (194)
T ss_pred CCEEecCCCCHHHHHHHHHHHCCCceEE
Confidence 99999999998766 566666654443
No 400
>PRK04694 Maf-like protein; Reviewed
Probab=31.16 E-value=2.2e+02 Score=29.23 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=55.0
Q ss_pred EEecCchHHHHHHHHHHHcCCeeEEEE---cCCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceee
Q psy17541 530 LTYGCSSLVEKILLTAHEKGTKFRVII---VDGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHA 603 (717)
Q Consensus 530 LTyg~SStV~~vL~~A~e~Gk~FrVIV---vESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAda 603 (717)
|..+.+|--+.-|+.. .|..|.|+. .|+....+ -..++.+|+...-. ++...+. .-+.++||||.
T Consensus 2 lILAS~SprR~elL~~--~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~lvI~aDT 72 (190)
T PRK04694 2 LYLASRSPRRRELLQR--LDVPFQTLQLDVPEVRAADESPDHYVQRVALEKAH-------AGLALVQAADADAIVLGSDT 72 (190)
T ss_pred EEEcCCCHHHHHHHHH--CCCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHHhhccCCCCEEEEeCe
Confidence 4455555545444433 388899885 44433322 25666666653221 1111111 23679999999
Q ss_pred Eec-CCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 604 LLS-NGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 604 Vla-NG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
|.. ||.++.|-.+..-| |+-...|....|
T Consensus 73 vv~~~g~ilgKP~~~~eA~~~L~~lsG~~h~V 104 (190)
T PRK04694 73 EVVLGERVFGKPVDVDDAIAMLRALSGRTHQV 104 (190)
T ss_pred EEEECCEEecCCCCHHHHHHHHHHhCCCceEE
Confidence 774 99999999998766 555555554433
No 401
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=31.13 E-value=2e+02 Score=28.28 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=47.0
Q ss_pred CCCeEEEec--CchHHHHHHHHHHHcCCeeEEEEcCC--CCchh-HHHHH-HHHHhCCCcEEEEcchHHHHHhhhccEEE
Q psy17541 525 NDDVILTYG--CSSLVEKILLTAHEKGTKFRVIIVDG--SPWYE-GKEML-RRLVKHQVDCSYVLLSAVSYIMREVSKVI 598 (717)
Q Consensus 525 dGdvILTyg--~SStV~~vL~~A~e~Gk~FrVIVvES--RP~~E-Gr~lA-~~L~~~GI~vTyI~DSAVsyiM~~VdkVL 598 (717)
+|-+|.-.| +++++..++.-+..-|..|.++..+. -|... -...+ ....+.|..+++. ..+...++.+|.|.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--~~~~e~l~~aDvvy 78 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT--DDIEEALKGADVVY 78 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE--SSHHHHHTT-SEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE--eCHHHhcCCCCEEE
Confidence 355677777 58888888888877788877777666 33322 22223 3344568878877 56666777777765
Q ss_pred E
Q psy17541 599 I 599 (717)
Q Consensus 599 L 599 (717)
.
T Consensus 79 ~ 79 (158)
T PF00185_consen 79 T 79 (158)
T ss_dssp E
T ss_pred E
Confidence 4
No 402
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=31.05 E-value=63 Score=34.26 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=59.7
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeE-
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHAL- 604 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaV- 604 (717)
.||..|.|+.|-..|..+... ..+.|+.+ +|+.+.- ....++..++. +.|.||-=|-..
T Consensus 2 riLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~~dl----------------~d~~~~~~~~~~~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKE-RGYEVIAT-SRSDLDL----------------TDPEAVAKLLEAFKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTCS-T----------------TSHHHHHHHHHHH--SEEEE------
T ss_pred EEEEECCCCHHHHHHHHHHhh-CCCEEEEe-CchhcCC----------------CCHHHHHHHHHHhCCCeEeccceeec
Confidence 689999999988888887754 55788877 5552221 01123333333 245444433110
Q ss_pred -------ecCCCeecccchHHHHHHHHhCCCcEEecccCCccccc
Q psy17541 605 -------LSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCER 642 (717)
Q Consensus 605 -------laNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKFs~r 642 (717)
-..-..+|-.|+..+|-+|..++++++-++-.+=|+..
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~ 108 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGD 108 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SS
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCC
Confidence 00123578899999999999999999999988888765
No 403
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.04 E-value=1.4e+02 Score=32.37 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=30.3
Q ss_pred eEEEecCchHHHHHHHHHHHcCC-eeEEEEcC-CCCchhHHHHHHHHHhCCCcEEEEc
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGT-KFRVIIVD-GSPWYEGKEMLRRLVKHQVDCSYVL 583 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk-~FrVIVvE-SRP~~EGr~lA~~L~~~GI~vTyI~ 583 (717)
.||..|.++.. ..|..+.+.|. .++|.++= .+|...+. ..+.|||+.++.
T Consensus 93 ~vl~Sg~g~nl-~al~~~~~~~~~~~~i~~visn~~~~~~l-----A~~~gIp~~~~~ 144 (286)
T PRK13011 93 LIMVSKFDHCL-NDLLYRWRIGELPMDIVGVVSNHPDLEPL-----AAWHGIPFHHFP 144 (286)
T ss_pred EEEEcCCcccH-HHHHHHHHcCCCCcEEEEEEECCccHHHH-----HHHhCCCEEEeC
Confidence 56666766664 45555556654 45655443 37754332 456799999873
No 404
>PLN00203 glutamyl-tRNA reductase
Probab=30.85 E-value=2.7e+02 Score=32.95 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=46.5
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIG 600 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLG 600 (717)
+..|+.+|.+..-..++..+...|. -+|+|++ |.......++..+. |+.+.+++...+...+.++|.||..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~n-Rs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVN-RSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEe-CCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEc
Confidence 5789999999887777777766552 2466654 33322344444442 5666666666667778899998875
No 405
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=30.83 E-value=2.2e+02 Score=31.45 Aligned_cols=102 Identities=13% Similarity=0.192 Sum_probs=56.5
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCC-----------cEEEEcchHH-HHH
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQV-----------DCSYVLLSAV-SYI 590 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI-----------~vTyI~DSAV-syi 590 (717)
+...++|+|.|.+..+.. |......|. .|+| ..|.+.+...+. ...|+ .+.+++...- .+.
T Consensus 93 ~~~d~I~it~Ga~~al~~-l~~l~~~gd--~Vlv--~~P~y~~~~~~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 165 (402)
T TIGR03542 93 IDPEEIFISDGAKCDVFR-LQSLFGSDN--TVAV--QDPVYPAYVDSN--VMAGRAGVLDDDGRYSKITYLPCTKENNFI 165 (402)
T ss_pred CCHHHEEECCCcHHHHHH-HHHhcCCCC--EEEE--eCCCCcchHHHH--HHcCCccccccccccceEEEeecchhhCCC
Confidence 555678899998887665 444544443 3444 456676653333 33566 7777764321 111
Q ss_pred h-----hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 591 M-----REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 591 M-----~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+ .+++.|+|- .-=-.-|.++++-==..++-.|+.|++.+++
T Consensus 166 ~~~~~~~~~~~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 211 (402)
T TIGR03542 166 PDLPEEPKIDIIYLC-SPNNPTGTVLTKEQLKELVDYANEHGSLILF 211 (402)
T ss_pred CCccccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 1 234455542 1111225555544456778888889986654
No 406
>PRK13936 phosphoheptose isomerase; Provisional
Probab=30.79 E-value=5.8e+02 Score=25.83 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=17.3
Q ss_pred HHHHHHHhhccCCCeEEEecCch
Q psy17541 514 AICMFFHNKLANDDVILTYGCSS 536 (717)
Q Consensus 514 ~Ia~~A~e~I~dGdvILTyg~SS 536 (717)
..++.+.+.|.++..|..||.+.
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~ 53 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGG 53 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcH
Confidence 45556667788999999998764
No 407
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.76 E-value=2.9e+02 Score=31.70 Aligned_cols=91 Identities=11% Similarity=-0.009 Sum_probs=51.2
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
|..|+++|.+..=..+.+.+++.| .+|+|.|.++...-.. ..+|.+ ++...+...+ . -.+.++|.||+...
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g--~~v~~~d~~~~~~~~~-~~~l~~-~~~~~~~~~~-~-~~~~~~d~vV~Spg--- 78 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHL--PAQALTLFCNAVEARE-VGALAD-AALLVETEAS-A-QRLAAFDVVVKSPG--- 78 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcC--CEEEEEcCCCcccchH-HHHHhh-cCEEEeCCCC-h-HHccCCCEEEECCC---
Confidence 567888887643334444444334 5689999887644222 234655 4433333222 1 23467888766542
Q ss_pred cCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 606 SNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 606 aNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
|-- +.++-..|+..|+||+=
T Consensus 79 ----I~~---~~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 79 ----ISP---YRPEALAAAARGTPFIG 98 (468)
T ss_pred ----CCC---CCHHHHHHHHcCCcEEE
Confidence 211 24566777888888884
No 408
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=30.73 E-value=1.5e+02 Score=30.76 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCC-----eecccchHHHHH--HHHhCCCcEEecccCC
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGA-----VMSRAGTAQVSL--VARAFNVPVLAACETH 637 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~-----VvNKiGT~~VAL--aAK~~~VPVyV~cEty 637 (717)
+.+++.|.+.|+.+.++..... .+.++|.|+|.--. ..|. .+... ...+.+ -+...++||+-+|--+
T Consensus 15 ~~~~~al~~~G~~~~~i~~~~~--~l~~~d~lilpGG~--~~~d~~~~~~~~~~-~~~~~~l~~~~~~g~pvlgIC~G~ 88 (227)
T TIGR01737 15 RDTVYALRLLGVDAEIVWYEDG--SLPDYDGVVLPGGF--SYGDYLRAGAIAAA-SPIMQEVREFAEKGVPVLGICNGF 88 (227)
T ss_pred HHHHHHHHHCCCeEEEEecCCC--CCCCCCEEEECCCC--cccccccccchhcc-hHHHHHHHHHHHcCCEEEEECHHH
Confidence 5678889899999888875432 25678887665411 1111 01111 112222 3445789999777544
No 409
>PRK14367 Maf-like protein; Provisional
Probab=30.68 E-value=2.2e+02 Score=29.55 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=54.8
Q ss_pred EecCchHHHHHHHHHHHcCCeeEEEE---cCCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHh-----hhccEEEEce
Q psy17541 531 TYGCSSLVEKILLTAHEKGTKFRVII---VDGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIM-----REVSKVIIGA 601 (717)
Q Consensus 531 Tyg~SStV~~vL~~A~e~Gk~FrVIV---vESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM-----~~VdkVLLGA 601 (717)
..+.+|--+.-|+.. .|..|.|+. .|+-+..+ -..++.+|+...-. ++...+ ..-+.++|||
T Consensus 5 ILAS~SprR~eLL~~--~Gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~~~~~vI~a 75 (202)
T PRK14367 5 YLGSNSPRRMEILTQ--LGYRVVKLPAGIDETVKAGETPARYVQRMAEEKNR-------TALTLFCETNGTMPDFPLITA 75 (202)
T ss_pred EEeCCCHHHHHHHHH--CCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhhccccccCCCCEEEEe
Confidence 344554445544443 488998873 34433222 34566666553321 122211 1136699999
Q ss_pred eeEe-cCCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 602 HALL-SNGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 602 daVl-aNG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
|.|. -||.++.|-.+..-| |+....|.+..|
T Consensus 76 DTvV~~dg~IlgKP~~~eeA~~~L~~lsG~~h~V 109 (202)
T PRK14367 76 DTCVVSDGIILGKPRSQAEAIEFLNRLSGKQHTV 109 (202)
T ss_pred CcEEEECCEEecCCCCHHHHHHHHHHhCCCCeEE
Confidence 9976 699999999998766 566666665444
No 410
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=30.65 E-value=3.4e+02 Score=27.42 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=56.0
Q ss_pred CCeEEEecCch------HHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCc--EEE---EcchHHHHHhhhc
Q psy17541 526 DDVILTYGCSS------LVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVD--CSY---VLLSAVSYIMREV 594 (717)
Q Consensus 526 GdvILTyg~SS------tV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~--vTy---I~DSAVsyiM~~V 594 (717)
.-+|+..|+-. .+..++......+..++++++-..+......+.....+.|++ +.+ +.+..+..+|..+
T Consensus 203 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 282 (375)
T cd03821 203 KRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADA 282 (375)
T ss_pred CcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhC
Confidence 34677777532 234444444444567777777654443333332222555553 333 3345678888899
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
|.+++-... + | .| ...+=|-.+|+||++-
T Consensus 283 dv~v~ps~~--e-~-----~~--~~~~Eama~G~PvI~~ 311 (375)
T cd03821 283 DLFVLPSHS--E-N-----FG--IVVAEALACGTPVVTT 311 (375)
T ss_pred CEEEecccc--C-C-----CC--cHHHHHHhcCCCEEEc
Confidence 998876443 1 1 12 3456688899999883
No 411
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=30.56 E-value=5.9e+02 Score=28.77 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCcEE-EEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 566 KEMLRRLVKHQVDCS-YVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 566 r~lA~~L~~~GI~vT-yI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+++-+.|.+.||++. .++|..+..+ +.+ -|+-.+. ++.+.+.+..-.+-+.||+|++.+.
T Consensus 168 ~elk~lL~~~Gi~v~~~lpd~~~~e~-~~~----~~~~~~~----~~~~~~~~~A~~Le~~~GiP~~~~~ 228 (407)
T TIGR01279 168 DQLRLELKQLGIPVVGFLPASHFTEL-PVI----GPGTVVA----PLQPYLSDTATTLRRERGAKVLSAP 228 (407)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCcchh-hhc----CCCeEEE----EechHHHHHHHHHHHHhCCccccCC
Confidence 678888889999998 7888654431 111 1222221 4556666666677788999988764
No 412
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=30.48 E-value=1.6e+02 Score=29.95 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEc-chHHHHHhh
Q psy17541 539 EKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVL-LSAVSYIMR 592 (717)
Q Consensus 539 ~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~-DSAVsyiM~ 592 (717)
...|..+..+|++ -|+++-+-|.+-| ..+++.|.+.|+++++|+ .+++.+++.
T Consensus 61 ~~~i~~~~~~g~~-V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a 116 (229)
T TIGR01465 61 VDIMSDAHREGKL-VVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAA 116 (229)
T ss_pred HHHHHHHHHCCCe-EEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHH
Confidence 4445444455654 4455578886654 678888999999999999 677766665
No 413
>PRK09105 putative aminotransferase; Provisional
Probab=30.31 E-value=4.4e+02 Score=28.89 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=35.4
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL 584 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D 584 (717)
+....+|+|.|.+..+..++......|. +|++.+ |.+.+... .+...|+++..++.
T Consensus 93 v~~e~I~it~Gs~~ai~~~~~~l~~~gd--~Vli~~--P~y~~~~~--~~~~~g~~~~~v~~ 148 (370)
T PRK09105 93 LPADHVMAYAGSSEPLNYAVLAFTSPTA--GLVTAD--PTYEAGWR--AADAQGAPVAKVPL 148 (370)
T ss_pred cChhhEEEcCChHHHHHHHHHHHcCCCC--EEEEeC--CChHHHHH--HHHHcCCeEEEecC
Confidence 4455788888888877766665544443 455543 77776533 23456888877754
No 414
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=30.24 E-value=1e+02 Score=35.23 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=44.6
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCch--hHHHHHHHHHhCC--CcEEEEcchHHHHHhh--hccEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWY--EGKEMLRRLVKHQ--VDCSYVLLSAVSYIMR--EVSKVIIG 600 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~--EGr~lA~~L~~~G--I~vTyI~DSAVsyiM~--~VdkVLLG 600 (717)
..||..|++.....+++.+.+.|. +++++.+.|.. .+..++.+....| ..-.|+....+-.+.+ ++|.|+-|
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi--~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg 80 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGI--RSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPG 80 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCC--eEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeC
Confidence 379999999999999999988775 45555555433 3333332211111 0012333334444443 58888877
Q ss_pred eeeEecC
Q psy17541 601 AHALLSN 607 (717)
Q Consensus 601 AdaVlaN 607 (717)
..-+..|
T Consensus 81 ~g~lse~ 87 (472)
T PRK07178 81 YGFLSEN 87 (472)
T ss_pred CCCcccC
Confidence 5434444
No 415
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=30.22 E-value=2.8e+02 Score=27.71 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=42.8
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHHHHHHhCCCcEEEEc-chHHHHHhhh-----ccEEEEc
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EMLRRLVKHQVDCSYVL-LSAVSYIMRE-----VSKVIIG 600 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA~~L~~~GI~vTyI~-DSAVsyiM~~-----VdkVLLG 600 (717)
.++...+... ...+. ...+|++ -|+++.+-|.+-|. ....++...+|++.+|+ .+++.+++.+ .+.++++
T Consensus 48 ~~~~~~~~~~-~~~i~-~~~~g~~-V~~l~~GDP~~~~~~~~~~~~~~~~~~veviPGiSs~~aaaa~~g~~l~~~~~is 124 (210)
T PRK05787 48 FVLTAGLRDL-LEWLE-LAAKGKN-VVVLSTGDPLFSGLGKLLKVRRAVAEDVEVIPGISSVQYAAARLGIDMNDVVFTT 124 (210)
T ss_pred EEecCCHHHH-HHHHH-HhhCCCc-EEEEecCCccccccHHHHHHHhccCCCeEEEcCHHHHHHHHHHhCCCHHHcEEEe
Confidence 4444444333 33443 3445666 46677999988873 23333444469999999 6777777654 3555555
Q ss_pred ee
Q psy17541 601 AH 602 (717)
Q Consensus 601 Ad 602 (717)
.|
T Consensus 125 ~~ 126 (210)
T PRK05787 125 SH 126 (210)
T ss_pred ec
Confidence 44
No 416
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=30.17 E-value=3.5e+02 Score=32.93 Aligned_cols=99 Identities=10% Similarity=0.130 Sum_probs=70.2
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcC-CeeEEEEcCCCCchhHH-----HHHHHHHhCCCcEEEEc---chHHHHHhhhcc
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKG-TKFRVIIVDGSPWYEGK-----EMLRRLVKHQVDCSYVL---LSAVSYIMREVS 595 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~G-k~FrVIVvESRP~~EGr-----~lA~~L~~~GI~vTyI~---DSAVsyiM~~Vd 595 (717)
....|+.+|-......++....+.| ..|+.++.|.-+.+-+| ++|+. ...+|++..|. +..+--++...|
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 5578999999998888888888888 56999999988776653 33333 23578888887 456677778899
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
.||.-+|-- +.-....+--.|...|.|++
T Consensus 207 iVi~vsDdy-------~~~~Lr~lN~acvkegk~~I 235 (637)
T TIGR03693 207 WVLYVSDNG-------DIDDLHALHAFCKEEGKGFI 235 (637)
T ss_pred EEEEECCCC-------ChHHHHHHHHHHHHcCCCeE
Confidence 998876522 22245666677777784443
No 417
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.15 E-value=3.2e+02 Score=30.71 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=53.4
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHh--CCCcEEEEcchHHHHHhhhccEEEEceee
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK--HQVDCSYVLLSAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~--~GI~vTyI~DSAVsyiM~~VdkVLLGAda 603 (717)
|.+|+.+|.+..=..+.+.+.+.| +.|.+.|..+..+. ..+|.+ .||.+.+-.... ......|.||++...
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g--~~v~~~d~~~~~~~---~~~l~~~~~gi~~~~g~~~~--~~~~~~d~vv~spgi 77 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG--AEVAAYDAELKPER---VAQIGKMFDGLVFYTGRLKD--ALDNGFDILALSPGI 77 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCchh---HHHHhhccCCcEEEeCCCCH--HHHhCCCEEEECCCC
Confidence 568899988865444444455555 57888888776532 234554 477665433222 234578888776522
Q ss_pred EecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 604 LLSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 604 VlaNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
= . +.+.-..|+++++||+
T Consensus 78 ~-~---------~~p~~~~a~~~~i~v~ 95 (445)
T PRK04308 78 S-E---------RQPDIEAFKQNGGRVL 95 (445)
T ss_pred C-C---------CCHHHHHHHHcCCcEE
Confidence 1 1 2456666777777776
No 418
>KOG1430|consensus
Probab=30.01 E-value=3.2e+02 Score=30.99 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=67.0
Q ss_pred CCeEEEec-CchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHH-hCCCcEEEEc-----chHHHHHhhhccEEE
Q psy17541 526 DDVILTYG-CSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLV-KHQVDCSYVL-----LSAVSYIMREVSKVI 598 (717)
Q Consensus 526 GdvILTyg-~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~-~~GI~vTyI~-----DSAVsyiM~~VdkVL 598 (717)
+.++|+.| .+-+.++++....+.+...+|+++|-.|...- +-.++. .+.-.++++. ...+......+ .|+
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~--~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSN--LPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccc--cchhhhcccCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 45566665 55566777777777777899999999986321 001111 0344455552 23344445556 333
Q ss_pred EceeeEecCC--------CeecccchHHHHHHHHhCCCcEEecccCCcc
Q psy17541 599 IGAHALLSNG--------AVMSRAGTAQVSLVARAFNVPVLAACETHKF 639 (717)
Q Consensus 599 LGAdaVlaNG--------~VvNKiGT~~VALaAK~~~VPVyV~cEtyKF 639 (717)
.=|.....+= .-+|--||..+--+|+..||+.+|-..+.-.
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~V 129 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYV 129 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceE
Confidence 3222222211 2357889999999999999999997666543
No 419
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=29.96 E-value=3.7e+02 Score=29.37 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=58.4
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEE-EcCCCCchhHHHHHHHHHhCCCcEEEEc-chHHHHHhhhccEEEEceeeEe
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVI-IVDGSPWYEGKEMLRRLVKHQVDCSYVL-LSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVI-VvESRP~~EGr~lA~~L~~~GI~vTyI~-DSAVsyiM~~VdkVLLGAdaVl 605 (717)
.|...|.+..-...+....+ ...|++. |++-.|...|...++ +.|+++++-. +..+ -.+++|.||+..-.=
T Consensus 3 rVAIIG~G~IG~~h~~~ll~-~~~~elvaV~d~d~es~~la~A~---~~Gi~~~~~~~e~ll--~~~dIDaV~iaTp~~- 75 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLR-SEHLEMVAMVGIDPESDGLARAR---ELGVKTSAEGVDGLL--ANPDIDIVFDATSAK- 75 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHh-CCCcEEEEEEeCCcccHHHHHHH---HCCCCEEECCHHHHh--cCCCCCEEEECCCcH-
Confidence 45667765433333344433 4556655 677777776755554 4688876522 2112 135799998865211
Q ss_pred cCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 606 SNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 606 aNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
-...+++.|..+|+.|+...+.+
T Consensus 76 ---------~H~e~a~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 76 ---------AHARHARLLAELGKIVIDLTPAA 98 (285)
T ss_pred ---------HHHHHHHHHHHcCCEEEECCccc
Confidence 23678899999999999888877
No 420
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=29.92 E-value=1.2e+02 Score=36.94 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=36.1
Q ss_pred cCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH--HHHHHHHHhCCCcEEEEc
Q psy17541 533 GCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG--KEMLRRLVKHQVDCSYVL 583 (717)
Q Consensus 533 g~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG--r~lA~~L~~~GI~vTyI~ 583 (717)
+..+-|...|..|+++|+.++|+|-=-.=..|+ ...+++|.++|+.|.|-.
T Consensus 368 ~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viyg~ 420 (672)
T TIGR03705 368 SKDSPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVYGV 420 (672)
T ss_pred cCCcHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEEcC
Confidence 433455688888989999999887521112233 467889999999999844
No 421
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=29.82 E-value=4.7e+02 Score=27.76 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=60.1
Q ss_pred cCC-CeEEEecCchHHHHHHHHHHHcCCeeE-------EEEcCC--CCchh------HHHHHHHHHhCCCcEEEEcc---
Q psy17541 524 AND-DVILTYGCSSLVEKILLTAHEKGTKFR-------VIIVDG--SPWYE------GKEMLRRLVKHQVDCSYVLL--- 584 (717)
Q Consensus 524 ~dG-dvILTyg~SStV~~vL~~A~e~Gk~Fr-------VIVvES--RP~~E------Gr~lA~~L~~~GI~vTyI~D--- 584 (717)
..| ..||+||.++.+...+...- -...|. ..|++- .+..+ ...++..|.+.|++..-+.-
T Consensus 26 ~~g~~~VlVHGgg~~i~~~~~~~g-i~~~~~~~~~g~~~rvt~~~~l~~~~~a~~~ln~~lv~~L~~~Gv~a~~l~~~~~ 104 (268)
T PRK14058 26 ADGERVVLVHGGSDEVNELLERLG-IEPRFVTSPSGVTSRYTDRETLEVFIMAMALINKQLVERLQSLGVNAVGLSGLDG 104 (268)
T ss_pred HCCCCEEEEeCCHHHHHHHHHHcC-CCceEEeCCCCCceEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcccC
Confidence 344 58999999998877665441 111220 112221 11111 13456678888876444332
Q ss_pred -----------------------------------hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCc
Q psy17541 585 -----------------------------------SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVP 629 (717)
Q Consensus 585 -----------------------------------SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VP 629 (717)
..+..++..-..+++...++..+|.++|--+=...+++|...+.-
T Consensus 105 ~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~ 184 (268)
T PRK14058 105 GLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAE 184 (268)
T ss_pred CEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCC
Confidence 233444444445666666655667777666666677788887776
Q ss_pred EEe
Q psy17541 630 VLA 632 (717)
Q Consensus 630 VyV 632 (717)
-++
T Consensus 185 ~li 187 (268)
T PRK14058 185 ALV 187 (268)
T ss_pred EEE
Confidence 333
No 422
>PRK06855 aminotransferase; Validated
Probab=29.82 E-value=3e+02 Score=30.98 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=54.7
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-c---------hHHHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-L---------SAVSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-D---------SAVsyiM~ 592 (717)
+....+++|.|.+..+..++. +...|. .|+| + .|.+.+...+.. ...|+.+..+. | .++...+.
T Consensus 94 ~~~~~I~it~G~~~al~~~~~-l~~~Gd--~Vlv-~-~P~Y~~~~~~~~-~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~ 167 (433)
T PRK06855 94 ITPDDIIFFNGLGDAIAKIYG-LLRREA--RVIG-P-SPAYSTHSSAEA-AHAGYPPVTYRLDPENNWYPDLDDLENKVK 167 (433)
T ss_pred CCHhHEEEcCcHHHHHHHHHH-hcCCCC--eEEE-e-CCCCchHHHHHH-HhcCCeEEEEecccccCCCCCHHHHHHHHh
Confidence 444568889888887766653 433342 3444 3 477777543322 23466544442 1 22222232
Q ss_pred ---hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 ---EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 ---~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++.++++-- -=-.-|.++++-=-..|+-+|+.|++.++.
T Consensus 168 ~~~~~~~i~l~~-P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 209 (433)
T PRK06855 168 YNPSIAGILLIN-PDNPTGAVYPKEILREIVDIAREYDLFIIC 209 (433)
T ss_pred cCCCceEEEEEC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 222333221 112236666666567788888999987774
No 423
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=29.80 E-value=1.3e+02 Score=29.10 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=20.1
Q ss_pred HHhhccCCCeEEEecCch---HHHHHHHHHHHcC
Q psy17541 519 FHNKLANDDVILTYGCSS---LVEKILLTAHEKG 549 (717)
Q Consensus 519 A~e~I~dGdvILTyg~SS---tV~~vL~~A~e~G 549 (717)
....+..||+++.+++|. .+..++..|++.|
T Consensus 73 ~~~~~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g 106 (154)
T TIGR00441 73 VEALGQKGDVLLGISTSGNSKNVLKAIEAAKDKG 106 (154)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 344568899999987774 4555555555443
No 424
>PRK12743 oxidoreductase; Provisional
Probab=29.76 E-value=2e+02 Score=29.15 Aligned_cols=74 Identities=16% Similarity=0.092 Sum_probs=46.5
Q ss_pred CCeEEEecCchHHHHHHH-HHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-c----hHHHHHhh-------
Q psy17541 526 DDVILTYGCSSLVEKILL-TAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-L----SAVSYIMR------- 592 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~-~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-D----SAVsyiM~------- 592 (717)
+.+||+.|-|+-|-..|. ...+.| .+|+++..|+......+...|...|..+.++. | .++..++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG--FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457788887776655444 444444 57888877777667777788887776665542 2 23333333
Q ss_pred hccEEEEce
Q psy17541 593 EVSKVIIGA 601 (717)
Q Consensus 593 ~VdkVLLGA 601 (717)
.+|.||..|
T Consensus 80 ~id~li~~a 88 (256)
T PRK12743 80 RIDVLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 467777765
No 425
>PRK14851 hypothetical protein; Provisional
Probab=29.68 E-value=3.4e+02 Score=33.23 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=63.7
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCC-eeEEE---EcC----CCCch-----hHH----HHHHHHHhC--
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGT-KFRVI---IVD----GSPWY-----EGK----EMLRRLVKH-- 575 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk-~FrVI---VvE----SRP~~-----EGr----~lA~~L~~~-- 575 (717)
|+..+.++|.+ ..|++.|.+.+=-.++......|. +|+++ ++| .|-.+ -|+ .+++.|.+.
T Consensus 33 ~g~e~Q~kL~~-~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP 111 (679)
T PRK14851 33 FTPGEQERLAE-AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINP 111 (679)
T ss_pred cCHHHHHHHhc-CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCC
Confidence 55556677754 899999998653344444444464 34444 222 23221 132 345566654
Q ss_pred CCcEEEEc----chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 576 QVDCSYVL----LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 576 GI~vTyI~----DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+++++.+. ...+..++..+|.||-+.|... +- +- ..+.-.|+.++||||.+.
T Consensus 112 ~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~----~~--~r-~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 112 FLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQ----FE--IR-RTLFNMAREKGIPVITAG 167 (679)
T ss_pred CCeEEEEecCCChHHHHHHHhCCCEEEECCCCCc----HH--HH-HHHHHHHHHCCCCEEEee
Confidence 46666553 2346667888999887766421 00 00 234456888999999765
No 426
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=29.64 E-value=2.5e+02 Score=28.47 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=61.8
Q ss_pred HHHHHhhccCCCeEEEec--Cch---HHHHHHH-HHHHc-----CCeeEEEEcC---CC-----------------Cchh
Q psy17541 516 CMFFHNKLANDDVILTYG--CSS---LVEKILL-TAHEK-----GTKFRVIIVD---GS-----------------PWYE 564 (717)
Q Consensus 516 a~~A~e~I~dGdvILTyg--~SS---tV~~vL~-~A~e~-----Gk~FrVIVvE---SR-----------------P~~E 564 (717)
++.|+.+|++||.|.+-+ ..+ .+...|. ++.+. ...+.++... .. +++-
T Consensus 12 a~eA~~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~~~~~~~~~~~~~s~f~ 91 (198)
T PF02550_consen 12 AEEAASLIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPYLAPESAFHFRHNSFFV 91 (198)
T ss_dssp HHHHHTTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCCHSGCCTCCEEEEESS-
T ss_pred HHHHHHhCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccccchhhhhhcccCcccC
Confidence 456788999999999887 333 3444444 33332 1235555544 12 2333
Q ss_pred HHHHHHHHHhCC-CcEEEEcchHHHHHhhh----ccEEEEceeeEecCCCeecccchHHHHHHHHh
Q psy17541 565 GKEMLRRLVKHQ-VDCSYVLLSAVSYIMRE----VSKVIIGAHALLSNGAVMSRAGTAQVSLVARA 625 (717)
Q Consensus 565 Gr~lA~~L~~~G-I~vTyI~DSAVsyiM~~----VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~ 625 (717)
|. ..+.+...| ++..-+..+.+...+.+ +|.+|+-+..+-.+|++.--+|..-.-.++..
T Consensus 92 ~~-~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De~Gy~slG~s~~~~~~~ie~ 156 (198)
T PF02550_consen 92 GP-NERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDEHGYFSLGTSVDYTKAAIEQ 156 (198)
T ss_dssp -H-HHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-TTSEEECTTBHBTHHHHHHH
T ss_pred CH-HHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCCCCCEeecHHHHhHHHHHhc
Confidence 33 356666666 45555668889877653 89999999999999988776664433333443
No 427
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=29.59 E-value=3e+02 Score=33.00 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=40.2
Q ss_pred HHHHhCCCcEEEEcchH--------HHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHh-CCCcEEecccCCccc
Q psy17541 570 RRLVKHQVDCSYVLLSA--------VSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA-FNVPVLAACETHKFC 640 (717)
Q Consensus 570 ~~L~~~GI~vTyI~DSA--------VsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~-~~VPVyV~cEtyKFs 640 (717)
..|.+.||.+++|.... +-...++...|| ++.+|....-.|+..++.++.. ..+||.-++-...|.
T Consensus 515 ~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~k~~~vv-----tvEE~~~~GGlGs~v~~~l~~~~~~~~v~~ig~~d~~~ 589 (617)
T TIGR00204 515 ESLNEKGIEATVVDARFVKPLDEELILEIAASHEKLV-----TVEENAIMGGAGSAVLEFLMDQNKLVPVKRLGIPDFFI 589 (617)
T ss_pred HHHHhcCCCEEEEecCcCCcCCHHHHHHHHhhcCeEE-----EEECCCCccChHHHHHHHHHhcCCCCCeEEEeCCCcCc
Confidence 44555555555554322 333334455553 5577777788899999999888 467877666544443
No 428
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=29.55 E-value=1.4e+02 Score=33.84 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=40.1
Q ss_pred chHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 584 LSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 584 DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
-.++.++|..=+. .-|+++.=|.|..-+|+-.-.-++.+|++|++|..
T Consensus 172 PPa~~~ll~~~~~---~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaG 219 (364)
T PRK15062 172 PPAMRALLEDPEL---RIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAG 219 (364)
T ss_pred HHHHHHHHcCCCC---CccEEEecCEeEEEeccchhHHHHHHcCCCeEEec
Confidence 4678888865432 56788888999999999999999999999999854
No 429
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=29.52 E-value=3.2e+02 Score=27.65 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=53.3
Q ss_pred ecCchHHHHHHHHHHHcCCeeEEE---EcCCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe-c
Q psy17541 532 YGCSSLVEKILLTAHEKGTKFRVI---IVDGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL-S 606 (717)
Q Consensus 532 yg~SStV~~vL~~A~e~Gk~FrVI---VvESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl-a 606 (717)
.+.+|--+.-|+.. .|-.|.++ +.|+.+..+ -..++.+|+...- .++....+ -+.++||||.|+ -
T Consensus 3 LaS~SprR~elL~~--~g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~Ka-------~~v~~~~~-~~~liI~aDtvv~~ 72 (180)
T cd00555 3 LASASPRRRELLEQ--LGIPFEVVPSDIDETPIKGESPEDYVLRLAEAKA-------EAVAARLP-PDALVIGADTVVVL 72 (180)
T ss_pred ECCCCHHHHHHHHh--CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHhCC-CCCEEEEecEEEEE
Confidence 44444444444333 37889988 445544433 3566777665321 01111111 157999999976 5
Q ss_pred CCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 607 NGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 607 NG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
||.++.|-.+..-| |+-...|.+.-|
T Consensus 73 ~g~il~KP~~~~eA~~~L~~lsg~~h~v 100 (180)
T cd00555 73 DGRILGKPKDREEAREMLKRLSGRTHEV 100 (180)
T ss_pred CCEEEcCCCCHHHHHHHHHHHcCCCcEE
Confidence 99999999998766 455555554443
No 430
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=29.49 E-value=1.7e+02 Score=33.51 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=42.1
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEE
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVI 598 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVL 598 (717)
+-.|++|+++|++..=..+...|+..|- +|+|+|..|... ..| ...|..+.. . ...+..+|.||
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~--~~A---~~~G~~~~~-~----~e~v~~aDVVI 262 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICA--LQA---AMEGYEVMT-M----EEAVKEGDIFV 262 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhH--HHH---HhcCCEEcc-H----HHHHcCCCEEE
Confidence 4579999999999986777777766665 799999877642 223 345774432 1 12345666665
No 431
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=29.43 E-value=64 Score=37.49 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=40.2
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEceeeE
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHAL 604 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA~~L~~~GI~vTyI~DSAVsyiM~--~VdkVLLGAdaV 604 (717)
.||.+|.+.-...+...+.+..+.++||++.+.+ +-|. .++......-+.+.+.....+..+.+ ++|.||+|.+.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6899999887333333444443467999997633 3343 12221111001111122233444443 589999998764
Q ss_pred e
Q psy17541 605 L 605 (717)
Q Consensus 605 l 605 (717)
+
T Consensus 81 l 81 (486)
T PRK05784 81 L 81 (486)
T ss_pred H
Confidence 4
No 432
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=29.43 E-value=6.8e+02 Score=26.70 Aligned_cols=35 Identities=11% Similarity=-0.022 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q psy17541 566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIG 600 (717)
Q Consensus 566 r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLG 600 (717)
..+++.+.+.|+++..|+.+.-+.+-+.+|.+|.-
T Consensus 106 ~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 106 DLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred HHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 57899999999999999998888888889999853
No 433
>PRK03903 transaldolase; Provisional
Probab=29.34 E-value=6.5e+02 Score=27.56 Aligned_cols=92 Identities=8% Similarity=0.083 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEec--CchHHHHHHHHHHH----c-CCeeEEEEcCCCCchhHHHHHHHHHhCCCc
Q psy17541 506 EQVDMAGNAICMFFHNKLANDDVILTYG--CSSLVEKILLTAHE----K-GTKFRVIIVDGSPWYEGKEMLRRLVKHQVD 578 (717)
Q Consensus 506 ErI~~A~e~Ia~~A~e~I~dGdvILTyg--~SStV~~vL~~A~e----~-Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~ 578 (717)
+.|..|.+.+.-.... -.+|.+=+=.. .+.....++.+|++ - +.++-|=|.=+ .+|...++.|...||+
T Consensus 24 ~Di~~a~d~l~p~~~~-g~~G~VS~EV~P~la~d~~~~i~ea~~L~~~~~~~nv~IKIPaT---~~Gl~Ai~~L~~~GI~ 99 (274)
T PRK03903 24 KDIKKAADKLLPLYEK-PDDGFISIEIDPFLEDDAAGSIEEGKRLYKTIGRPNVMIKVPAT---KAGYEAMSALMKKGIS 99 (274)
T ss_pred HHHHHHHHHhHHHhcC-CCCCeEEEEEccccccCHHHHHHHHHHHHHhcCCCCEEEEeCCC---HHHHHHHHHHHHCCCc
Confidence 4444455544443333 34443321111 23333455555533 1 22333334333 3899999999999999
Q ss_pred EEEEcchHHHHHhhhccEEEEce
Q psy17541 579 CSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 579 vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
|...+.-++...+.-+....-|+
T Consensus 100 vn~TliFS~~Qa~~~a~A~~~Ga 122 (274)
T PRK03903 100 VNATLIFSPEQAKECAEALNEGL 122 (274)
T ss_pred EEEeeecCHHHHHHHHHHHHcCc
Confidence 88887766666554333333444
No 434
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=29.33 E-value=1.8e+02 Score=31.26 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=46.3
Q ss_pred EEecCchHHHHHHHHHHH-cCCee--EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEec
Q psy17541 530 LTYGCSSLVEKILLTAHE-KGTKF--RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLS 606 (717)
Q Consensus 530 LTyg~SStV~~vL~~A~e-~Gk~F--rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVla 606 (717)
+++-|+.-+...+..+.+ .|.++ =+|+.=+-|.++-..=.+.+ +. +|||+|=-
T Consensus 156 ~~~~~d~~L~~~l~~~a~~~~~~~~~G~y~~~~Gp~feT~aE~~~~-------------------~~-----~Gad~VgM 211 (272)
T PRK08202 156 MSDAYDPELRALAKKVAKELGIPLQEGVYVGVSGPSYETPAEIRML-------------------RT-----LGADAVGM 211 (272)
T ss_pred CCcccCHHHHHHHHHHHHHcCCceeeEEEEEeeCCCcCCHHHHHHH-------------------HH-----cCCcEEec
Confidence 345566665666655543 34433 36666777888754211222 11 26776654
Q ss_pred CCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 607 NGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 607 NG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
. +.++|.+|+++++||.+++--
T Consensus 212 e--------~~~ea~lA~~~gi~~~~i~~V 233 (272)
T PRK08202 212 S--------TVPEVIVARHCGLKVLGISCI 233 (272)
T ss_pred C--------hHHHHHHHHHCCCcEEEEEEE
Confidence 4 478999999999999998643
No 435
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=29.27 E-value=2.6e+02 Score=33.45 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=49.1
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH----------------HHHHHHHhCCCcEEEEc----c
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK----------------EMLRRLVKHQVDCSYVL----L 584 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr----------------~lA~~L~~~GI~vTyI~----D 584 (717)
.|..|+++|.+..=+.+...+...|. +|.|.|..+...|. .....|.+.||++.+-. |
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~--~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 386 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV--QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD 386 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC--cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence 58899999998765555555555564 67888877754331 13455677898765432 2
Q ss_pred hHHHHHhhhccEEEEcee
Q psy17541 585 SAVSYIMREVSKVIIGAH 602 (717)
Q Consensus 585 SAVsyiM~~VdkVLLGAd 602 (717)
-.+..+....|.||++.=
T Consensus 387 ~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 387 ITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred CCHHHHHhcCCEEEEeCC
Confidence 234445567899998553
No 436
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=29.07 E-value=2.9e+02 Score=28.27 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=51.0
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
.|..||+.|.+.+-...+....+.|..+. |+. |.... . +..|...| .++++...-....+..+|.||...+.=
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~--VIs--~~~~~-~-l~~l~~~~-~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIV--VIS--PELTE-N-LVKLVEEG-KIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEE--EEc--CCCCH-H-HHHHHhCC-CEEEEecCCChhhcCCceEEEEcCCCH
Confidence 56789999999987777777777775444 443 32211 1 23344433 244544322233455666665543222
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
-+| ..|+..|+ .+++|.++-
T Consensus 82 -----elN----~~i~~~a~-~~~lvn~~d 101 (202)
T PRK06718 82 -----RVN----EQVKEDLP-ENALFNVIT 101 (202)
T ss_pred -----HHH----HHHHHHHH-hCCcEEECC
Confidence 222 34566664 468876653
No 437
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=29.06 E-value=4.8e+02 Score=28.28 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=53.2
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchH----------HHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSA----------VSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSA----------VsyiM~ 592 (717)
+...++|+|.|.+..+..++. +... . +|+| ..|.+.+.. ..+...|+.+..+.... ...+..
T Consensus 69 ~~~~~i~it~Ga~~~l~~~~~-~~~~--~-~v~i--~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (354)
T PRK06358 69 LDLENVILGNGATELIFNIVK-VTKP--K-KVLI--LAPTFAEYE--RALKAFDAEIEYAELTEETNFAANEIVLEEIKE 140 (354)
T ss_pred CChhhEEECCCHHHHHHHHHH-HhCC--C-cEEE--ecCChHHHH--HHHHHcCCeeEEEeCccccCCCccHHHHHhhcc
Confidence 555678888888777655544 4422 2 4554 345555432 33455788877775321 122223
Q ss_pred hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 ~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..|++- .-=-.-|.++++-=-..++-.|+.+++.+++
T Consensus 141 ~~~~v~~~-~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 141 EIDLVFLC-NPNNPTGQLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred CCCEEEEe-CCCCCCCCccCHHHHHHHHHHHHhcCCEEEE
Confidence 34544441 1112234444433344566778889987665
No 438
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=29.04 E-value=3e+02 Score=30.46 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=20.4
Q ss_pred HHHHHHHhhccCC-CeEEEecCchHHHHHHH
Q psy17541 514 AICMFFHNKLAND-DVILTYGCSSLVEKILL 543 (717)
Q Consensus 514 ~Ia~~A~e~I~dG-dvILTyg~SStV~~vL~ 543 (717)
.++...++++..| .+|||||.+-.|-..+.
T Consensus 30 ~~a~~ia~l~~~g~~vviv~gngpqvG~~~l 60 (310)
T TIGR00746 30 QTAPQIAKLIKRGYELVITHGNGPQVGNLLL 60 (310)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHh
Confidence 4444555566554 79999999887765544
No 439
>PLN02427 UDP-apiose/xylose synthase
Probab=28.98 E-value=2e+02 Score=31.39 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=58.9
Q ss_pred CeEEEecCchHHHHHHHHH-HHcCCeeEEEEcCCCCchhHHHHHHHHHhCC-----CcEEEEc-----chHHHHHhhhcc
Q psy17541 527 DVILTYGCSSLVEKILLTA-HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQ-----VDCSYVL-----LSAVSYIMREVS 595 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A-~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~G-----I~vTyI~-----DSAVsyiM~~Vd 595 (717)
.+||+.|-+..|-.-|... .+.| ..+|++++-++.. ...|...+ -.++++. ...+..++..+|
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~-----~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDK-----IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchh-----hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 4688888887776655544 3332 2577777643321 12222211 1244432 235666788899
Q ss_pred EEEEceeeEecCC--------CeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 596 KVIIGAHALLSNG--------AVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 596 kVLLGAdaVlaNG--------~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
.||=-|-.+.... ...|-.||..+.-+|+..+..|+.+.-
T Consensus 89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS 136 (386)
T PLN02427 89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFST 136 (386)
T ss_pred EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 8886553221111 125778999988889888876665543
No 440
>PRK02141 Maf-like protein; Reviewed
Probab=28.95 E-value=2.4e+02 Score=29.36 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=54.7
Q ss_pred EEecCchHHHHHHHHHHHcCCeeEEEEc---CCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHhh-hccEEEEceeeE
Q psy17541 530 LTYGCSSLVEKILLTAHEKGTKFRVIIV---DGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIMR-EVSKVIIGAHAL 604 (717)
Q Consensus 530 LTyg~SStV~~vL~~A~e~Gk~FrVIVv---ESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM~-~VdkVLLGAdaV 604 (717)
|..+.+|--+.-|+.. .|..|.|+.. |+....+ -..++.+|....-. ++..-+. .-+.++||||.|
T Consensus 11 iILAS~SprR~elL~~--~G~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~-------~v~~~l~~~~~~iVI~aDTv 81 (207)
T PRK02141 11 LILASSSRYRRELLER--LRLPFDVVSPDIDETPLAGETPAATALRLAAAKAR-------AVAATIDAPPGALVIGSDQV 81 (207)
T ss_pred EEEeCCCHHHHHHHHH--CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhhccCCCCEEEEeCeE
Confidence 3444444434444333 3889988843 4433222 35666666653321 1222111 236799999997
Q ss_pred e-cCCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 605 L-SNGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 605 l-aNG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
+ -||.++.|-.+..=| |+-.-.|...-|
T Consensus 82 V~~~g~ilgKP~~~~eA~~mL~~lsG~~H~V 112 (207)
T PRK02141 82 ATFDGLQIGKPGTHERALAQLQAMRGRTVEF 112 (207)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhCCCceEE
Confidence 6 599999999998766 555555554433
No 441
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=28.95 E-value=5.9e+02 Score=26.83 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=57.9
Q ss_pred CchHHHHHHHHHHH---cCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHH----hhhccEEEEceeeEec
Q psy17541 534 CSSLVEKILLTAHE---KGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYI----MREVSKVIIGAHALLS 606 (717)
Q Consensus 534 ~SStV~~vL~~A~e---~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyi----M~~VdkVLLGAdaVla 606 (717)
.+...+.++.+|++ .+.++-|=|.=+. +|...++.|.+.||+|.....-++... ...++.|=....++-.
T Consensus 61 ~~~d~e~mi~eA~~l~~~~~nv~IKIP~T~---~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~ 137 (220)
T PRK12655 61 MSRDAQGMVEEAKRLRNAIPGIVVKIPVTA---EGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDA 137 (220)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhH
Confidence 34455777777765 2444444354443 899999999999999887776555444 2345555555555544
Q ss_pred CCCeecccchHHHHH---HHHhCCCcEEecccCCc
Q psy17541 607 NGAVMSRAGTAQVSL---VARAFNVPVLAACETHK 638 (717)
Q Consensus 607 NG~VvNKiGT~~VAL---aAK~~~VPVyV~cEtyK 638 (717)
+|. -|-..+.- +-+.|+.+.=|++-++|
T Consensus 138 ~g~----dg~~~i~~~~~~~~~~~~~tkILaAS~r 168 (220)
T PRK12655 138 QGG----DGIRMVQELQTLLEMHAPESMVLAASFK 168 (220)
T ss_pred cCC----CHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 432 23222222 22235667777777776
No 442
>PRK09135 pteridine reductase; Provisional
Probab=28.94 E-value=1.5e+02 Score=29.33 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=55.0
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCC-CcEEEE-----cchHHHHHhh------
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQ-VDCSYV-----LLSAVSYIMR------ 592 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~G-I~vTyI-----~DSAVsyiM~------ 592 (717)
.+.+||+.|.++-|-..|.....+ +..+|+++..+.......+...|...+ -.+.++ ...++..++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHA-AGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 456888888887766655544322 346888887665444445555565432 122222 2234544444
Q ss_pred -hccEEEEceeeEecCCC-----e--------ecccchHHHHHHHH
Q psy17541 593 -EVSKVIIGAHALLSNGA-----V--------MSRAGTAQVSLVAR 624 (717)
Q Consensus 593 -~VdkVLLGAdaVlaNG~-----V--------vNKiGT~~VALaAK 624 (717)
.+|.||-.|-... .+. . +|-.|+..+.-++.
T Consensus 84 ~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~ 128 (249)
T PRK09135 84 GRLDALVNNASSFY-PTPLGSITEAQWDDLFASNLKAPFFLSQAAA 128 (249)
T ss_pred CCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhchhHHHHHHHHH
Confidence 3688777764321 111 0 57788888877664
No 443
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=28.88 E-value=1.3e+02 Score=32.70 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=23.5
Q ss_pred ceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 600 GAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 600 GAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
+.|.|+.|. .++..+++|..+|||++.++..+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 667777765 23456788999999999887654
No 444
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.85 E-value=2.8e+02 Score=26.84 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=23.1
Q ss_pred eEEEecCchHHHHHHHHHHHc-CCeeEEEEcCCCCchhHH
Q psy17541 528 VILTYGCSSLVEKILLTAHEK-GTKFRVIIVDGSPWYEGK 566 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~-Gk~FrVIVvESRP~~EGr 566 (717)
+|.+|.....+...|....++ ...++|||+|..+..+..
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~ 43 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTV 43 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHH
Confidence 355566666666666655443 256788888766654433
No 445
>PRK15029 arginine decarboxylase; Provisional
Probab=28.76 E-value=1.9e+02 Score=35.69 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=53.8
Q ss_pred EEEEcCCCCch-------hHHHHHHHHHhCCCcEEEEcch--HHHHHhh--hccEEEEceeeEecCCCeecccchHHHHH
Q psy17541 553 RVIIVDGSPWY-------EGKEMLRRLVKHQVDCSYVLLS--AVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSL 621 (717)
Q Consensus 553 rVIVvESRP~~-------EGr~lA~~L~~~GI~vTyI~DS--AVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VAL 621 (717)
+|+++|.-+.. -...+...|...|+.|..+.+. ++..+.. ..|.||| |..+.++.-+. .|...+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 57788877742 2357888999999999988854 4444433 4899999 55667665332 12222222
Q ss_pred HH-HhCCCcEEecccCCc
Q psy17541 622 VA-RAFNVPVLAACETHK 638 (717)
Q Consensus 622 aA-K~~~VPVyV~cEtyK 638 (717)
+- ...++|||+++..-.
T Consensus 79 IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHhhCCCCCEEEEEcCCc
Confidence 22 235899999987664
No 446
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=28.72 E-value=1.2e+02 Score=32.08 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCCcEEEEcchH-HHHH---hhhccEEEEceeeEe
Q psy17541 564 EGKEMLRRLVKHQVDCSYVLLSA-VSYI---MREVSKVIIGAHALL 605 (717)
Q Consensus 564 EGr~lA~~L~~~GI~vTyI~DSA-Vsyi---M~~VdkVLLGAdaVl 605 (717)
.|+.+++.|.+.|+++.+|.... .... +.+.|.||.-+|..+
T Consensus 20 s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ 65 (299)
T PRK14571 20 SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTF 65 (299)
T ss_pred HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCC
Confidence 45566677777777766664321 1111 245788888777654
No 447
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=28.54 E-value=2.3e+02 Score=26.46 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=35.0
Q ss_pred HHHHhCCCcEEE--EcchHHHHHh--hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 570 RRLVKHQVDCSY--VLLSAVSYIM--REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 570 ~~L~~~GI~vTy--I~DSAVsyiM--~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
+.+.+.|+++.+ ...+.+...+ ..+|.||+|.+.-+.= ..+--.+..+++||.++-
T Consensus 23 ~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~---------~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 23 EYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYF---------KQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred HHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHH---------HHHHHHhhhcCCCEEEeC
Confidence 345668888776 4444455444 3689999997754321 123345556899999853
No 448
>PRK00148 Maf-like protein; Reviewed
Probab=28.43 E-value=3.6e+02 Score=27.76 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=53.2
Q ss_pred EecCchHHHHHHHHHHHcCCeeEEEE---cCCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEec
Q psy17541 531 TYGCSSLVEKILLTAHEKGTKFRVII---VDGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLS 606 (717)
Q Consensus 531 Tyg~SStV~~vL~~A~e~Gk~FrVIV---vESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVla 606 (717)
..+.+|--+.-|+.. .|..|.|+. -|+.+..+ -..++.+|+...-. ++.. ..-+.++||||.|..
T Consensus 4 ILAS~SprR~elL~~--~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~--~~~~~~vI~aDTvV~ 72 (194)
T PRK00148 4 VLASASPARLKLLRL--AGIPPLVVVSHVDEDAIAASSPSELVQALARAKAE-------AVAE--NAPDAVVLGCDSMLL 72 (194)
T ss_pred EEeCCCHHHHHHHHH--CCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHH--hCCCCEEEEeCcEEE
Confidence 344444445545443 388898873 34433322 24566666543210 1111 113679999999765
Q ss_pred -CCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 607 -NGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 607 -NG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
||-++.|-.+..=| |+-...|....|
T Consensus 73 ~~g~Il~KP~~~eeA~~~L~~lsG~~h~v 101 (194)
T PRK00148 73 IDGRLLGKPHTPEEAIERWQQMSGRTGEL 101 (194)
T ss_pred ECCEEecCCCCHHHHHHHHHHhCCCCcEE
Confidence 99999999998766 555555654444
No 449
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=28.42 E-value=2.5e+02 Score=28.40 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=25.6
Q ss_pred hhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 592 REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 592 ~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
..-|.+|+ |..+|. .--+..++-.|+.+|+|+++++..
T Consensus 110 ~~~Dv~I~----iS~SG~---t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 110 REGDVLLG----ISTSGN---SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34456553 444553 334566788899999999998865
No 450
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=28.40 E-value=1.2e+02 Score=33.91 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=57.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCC
Q psy17541 482 QLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSP 561 (717)
Q Consensus 482 ~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP 561 (717)
.++.+++..++--.+|..|-.|- +.+. ..+..|+.|+++|.+.+-...+..|+..| .+|++++..+
T Consensus 135 ~iP~~~d~~~aApllCaGiT~y~------alk~------~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~ 200 (339)
T COG1064 135 KIPEGLDLAEAAPLLCAGITTYR------ALKK------ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSE 200 (339)
T ss_pred ECCCCCChhhhhhhhcCeeeEee------ehhh------cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCCh
Confidence 45666777777777777666552 1111 24778999999999988888889998888 8999999876
Q ss_pred chhHHHHHHHHHhCCCcEEEE
Q psy17541 562 WYEGKEMLRRLVKHQVDCSYV 582 (717)
Q Consensus 562 ~~EGr~lA~~L~~~GI~vTyI 582 (717)
.- +++|++| |-+..+.
T Consensus 201 ~K--~e~a~~l---GAd~~i~ 216 (339)
T COG1064 201 EK--LELAKKL---GADHVIN 216 (339)
T ss_pred HH--HHHHHHh---CCcEEEE
Confidence 53 2455555 4444444
No 451
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.25 E-value=2.4e+02 Score=27.71 Aligned_cols=90 Identities=9% Similarity=0.085 Sum_probs=50.2
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
.|..||..|.+.+-.+.+....+.|..+.|| + |... .+|.+.+ .+++....=-..-+..+|.||...+-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI---s-p~~~-----~~l~~l~-~i~~~~~~~~~~dl~~a~lViaaT~d- 80 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV---S-PEIC-----KEMKELP-YITWKQKTFSNDDIKDAHLIYAATNQ- 80 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE---c-CccC-----HHHHhcc-CcEEEecccChhcCCCceEEEECCCC-
Confidence 5789999999998887777777777766666 2 4322 2222222 12222211111123455666553322
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
.-+| ..++..|+. +++|.++.
T Consensus 81 ----~e~N----~~i~~~a~~-~~~vn~~d 101 (157)
T PRK06719 81 ----HAVN----MMVKQAAHD-FQWVNVVS 101 (157)
T ss_pred ----HHHH----HHHHHHHHH-CCcEEECC
Confidence 2233 667888887 46888664
No 452
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=28.11 E-value=3e+02 Score=31.39 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=51.6
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch----------HHHHHhh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS----------AVSYIMR 592 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS----------AVsyiM~ 592 (717)
+....+|+|-|.+..+..++......|. .|+ ++ .|.+.|....-.+ ..|+.+..+... ++-..+.
T Consensus 118 v~p~~Ivit~G~t~al~~l~~~l~~pGD--~Vl-v~-~P~Y~~f~~~~~~-~~g~~vv~v~~~~~~~f~~~~~~le~a~~ 192 (447)
T PLN02607 118 FDPDRIVLTAGATAANELLTFILADPGD--ALL-VP-TPYYPGFDRDLRW-RTGVKIVPIHCDSSNNFQVTPQALEAAYQ 192 (447)
T ss_pred cCHHHeEEcCChHHHHHHHHHHhCCCCC--EEE-Ec-CCCCcchHHHHHh-cCCcEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence 3344578888888876665544434443 233 33 5777765322211 357766665421 2222222
Q ss_pred -------hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 593 -------EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 593 -------~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
++..|+|. .-=-.-|.++.+-=-..+.-.|+.+++.+++
T Consensus 193 ~a~~~~~~vk~lll~-nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 193 EAEAANIRVRGVLIT-NPSNPLGATVQRSVLEDILDFVVRKNIHLVS 238 (447)
T ss_pred HHHHhCCCeeEEEEe-CCCCCcCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 34445441 1111223333333234556677888887764
No 453
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=28.06 E-value=3.5e+02 Score=29.79 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=49.4
Q ss_pred CCeeEEEEcCCCCchhHHHHHHHHHhCCCcEE--------------EEcc--hHHHHHhhhccEEEEceeeEecCCCeec
Q psy17541 549 GTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCS--------------YVLL--SAVSYIMREVSKVIIGAHALLSNGAVMS 612 (717)
Q Consensus 549 Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vT--------------yI~D--SAVsyiM~~VdkVLLGAdaVlaNG~VvN 612 (717)
...++++++-..|.. ...+...+.+.|+... ++.| ..+..++..+|.+|+|..- .+.|+
T Consensus 260 ~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~-~e~~g--- 334 (425)
T PRK05749 260 FPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL-VKRGG--- 334 (425)
T ss_pred CCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc-CCCCC---
Confidence 456777777444432 1345566677788532 2222 4678888999998886532 22222
Q ss_pred ccchHHHHHHHHhCCCcEEecccCCccc
Q psy17541 613 RAGTAQVSLVARAFNVPVLAACETHKFC 640 (717)
Q Consensus 613 KiGT~~VALaAK~~~VPVyV~cEtyKFs 640 (717)
. ..+=|-.+|+||++.-..+.|.
T Consensus 335 ---~--~~lEAma~G~PVI~g~~~~~~~ 357 (425)
T PRK05749 335 ---H--NPLEPAAFGVPVISGPHTFNFK 357 (425)
T ss_pred ---C--CHHHHHHhCCCEEECCCccCHH
Confidence 1 2477888999999854444443
No 454
>PRK06756 flavodoxin; Provisional
Probab=28.01 E-value=1.8e+02 Score=27.59 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCcEEEEcchH--HHHHhhhccEEEEceeeEecCCCeecccchHHHHHH-HHhCCCcEEeccc
Q psy17541 567 EMLRRLVKHQVDCSYVLLSA--VSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLV-ARAFNVPVLAACE 635 (717)
Q Consensus 567 ~lA~~L~~~GI~vTyI~DSA--VsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALa-AK~~~VPVyV~cE 635 (717)
.++..|.+.|+++.++.... ...-+.+.|.|++|+ ..+.+|.+-..+-.+.-.+. ..-.++||.+.+-
T Consensus 21 ~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gs-pt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 21 HIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGA-YTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEe-CCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 34455666777776654322 134567899999999 34444544322222211111 1225788887643
No 455
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=27.96 E-value=2.6e+02 Score=30.75 Aligned_cols=106 Identities=13% Similarity=0.001 Sum_probs=57.9
Q ss_pred hccCCCeEEEecCchHHHHHHHHH-HHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc----hHHHHHhhhccE
Q psy17541 522 KLANDDVILTYGCSSLVEKILLTA-HEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL----SAVSYIMREVSK 596 (717)
Q Consensus 522 ~I~dGdvILTyg~SStV~~vL~~A-~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D----SAVsyiM~~Vdk 596 (717)
+...+..||+.|-+..|-.-|... .+.| ++|++++-++.. . + ... ..++.. +..| ..+..++.++|.
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G--~~V~~v~r~~~~--~-~-~~~-~~~~~~-~~~Dl~d~~~~~~~~~~~D~ 88 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEG--HYIIASDWKKNE--H-M-SED-MFCHEF-HLVDLRVMENCLKVTKGVDH 88 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCC--CEEEEEEecccc--c-c-ccc-cccceE-EECCCCCHHHHHHHHhCCCE
Confidence 455778899999877765555444 3445 567766643210 0 0 000 011221 2223 234455678898
Q ss_pred EEEceeeEe------cCC---CeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 597 VIIGAHALL------SNG---AVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 597 VLLGAdaVl------aNG---~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
||--|-.+- .+- .-.|-.||..+.-+|+.+++.-+|.+.
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~S 136 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYAS 136 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 876653221 111 013567999999999999985555443
No 456
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=27.85 E-value=5.4e+02 Score=24.52 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=35.9
Q ss_pred eEEEecCchHHHHHHHHHHHcC-CeeEEEEcCCCCchhHHHHHHHHHhC-CCcEEEEc
Q psy17541 528 VILTYGCSSLVEKILLTAHEKG-TKFRVIIVDGSPWYEGKEMLRRLVKH-QVDCSYVL 583 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~G-k~FrVIVvESRP~~EGr~lA~~L~~~-GI~vTyI~ 583 (717)
+|-||.....+...|.....+. ..|+|||+|.....+=..+++.+... +..+.++.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~ 60 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIR 60 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEe
Confidence 5677777777888888776543 46899988755544445566666554 34445443
No 457
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=27.69 E-value=86 Score=33.39 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=39.2
Q ss_pred ccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL 584 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D 584 (717)
+..|++|.+.+.+..-..+=..|+..|.++.|++.++-|.. ....+...|-++.++..
T Consensus 54 ~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~----k~~~~~~~GA~v~~~~~ 111 (298)
T TIGR01139 54 LKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIE----RRKLLKAYGAELVLTPG 111 (298)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHH----HHHHHHHcCCEEEEECC
Confidence 45667777777776655555566667888888887776532 25556677877777754
No 458
>PRK02478 Maf-like protein; Reviewed
Probab=27.66 E-value=3.6e+02 Score=27.85 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=54.5
Q ss_pred EEecCchHHHHHHHHHHHcCCeeEEEEc---CCCC-------chhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q psy17541 530 LTYGCSSLVEKILLTAHEKGTKFRVIIV---DGSP-------WYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVII 599 (717)
Q Consensus 530 LTyg~SStV~~vL~~A~e~Gk~FrVIVv---ESRP-------~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLL 599 (717)
|..+.+|--+.-|+.. .|..|.|+.. |+-. ......++.+|+..... ++..- .-+.++|
T Consensus 5 iILAS~SprR~elL~~--~g~~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~-------~v~~~--~~~~ivI 73 (199)
T PRK02478 5 LILASKSPFRRALLEN--AGLEFSAAAADIDERAVEAPLEESGATPEDVALVLAEAKAI-------DVSER--FPGALVI 73 (199)
T ss_pred EEEeCCCHHHHHHHHH--CCCCeEEecCCCCCCccccccccCCCCHHHHHHHHHHHHHH-------HHHHH--CCCCEEE
Confidence 3455555444444333 3888998843 5421 12246677777653311 11111 1367999
Q ss_pred ceeeEe-cCCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 600 GAHALL-SNGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 600 GAdaVl-aNG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
|||.|. -||.++.|-.+..-| |+-...|....|
T Consensus 74 ~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~V 109 (199)
T PRK02478 74 GCDQTMSLGDEVFHKPKDMEEARRHLQKLSGKTHQL 109 (199)
T ss_pred EeCeEEEECCEEecCCCCHHHHHHHHHHhcCCCcEE
Confidence 999976 699999999998766 555555654443
No 459
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=27.55 E-value=6.3e+02 Score=27.42 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=49.8
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcch-H------HHHH----hhhcc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLS-A------VSYI----MREVS 595 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DS-A------Vsyi----M~~Vd 595 (717)
.+|+|.|.+..+..++......|. +|+|.+ |.+.+...+ ....|+.+..++.. . +..+ ..++.
T Consensus 95 ~ii~t~G~~~~i~~~~~~~~~~gd--~Vl~~~--P~y~~~~~~--~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~ 168 (385)
T PRK09276 95 EVISLIGSKEGIAHIPLAFVNPGD--VVLVPD--PGYPVYKIG--TIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAK 168 (385)
T ss_pred cEEEccCcHHHHHHHHHHhCCCCC--EEEEcC--CCCcChHHH--HHHcCCEEEEEecCCCCCCcCCHHHHHHhccccce
Confidence 367778877776555554444443 566533 666654433 33468777766521 1 1111 12333
Q ss_pred EEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 596 KVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 596 kVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
.|++- .-=-.-|.++..-=-..++-+|+.|++.+++
T Consensus 169 ~v~l~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (385)
T PRK09276 169 LMFIN-YPNNPTGAVADLEFFEEVVDFAKKYDIIVCH 204 (385)
T ss_pred EEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 34332 1101124444332234567778889986664
No 460
>PRK07589 ornithine cyclodeaminase; Validated
Probab=27.52 E-value=4.7e+02 Score=29.30 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=60.1
Q ss_pred HHHHHhhcc--CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhh
Q psy17541 516 CMFFHNKLA--NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMRE 593 (717)
Q Consensus 516 a~~A~e~I~--dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~ 593 (717)
+..+.+++. |-.+++.+|.+.....-++.+..-..--+|+|.. |-...-..++.++.+.|+++....+ +-.+..+
T Consensus 117 sala~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~-r~~~~a~~~~~~~~~~~~~v~~~~~--~~~av~~ 193 (346)
T PRK07589 117 SALAAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYD-IDPAATAKLARNLAGPGLRIVACRS--VAEAVEG 193 (346)
T ss_pred HHHHHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEe-CCHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhc
Confidence 334455553 4468999999865444433322222222455553 3222335788888888888887543 5666788
Q ss_pred ccEEEEce---e-------eEecCCCeecccchHH
Q psy17541 594 VSKVIIGA---H-------ALLSNGAVMSRAGTAQ 618 (717)
Q Consensus 594 VdkVLLGA---d-------aVlaNG~VvNKiGT~~ 618 (717)
+|.|+.-. + ..+..|..++-+|++.
T Consensus 194 ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 194 ADIITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred CCEEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 99888743 1 1345677888888755
No 461
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=27.43 E-value=2e+02 Score=30.71 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=48.9
Q ss_pred EEEecCchHHHHHHHHHHH-cCCee--EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 529 ILTYGCSSLVEKILLTAHE-KGTKF--RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A~e-~Gk~F--rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
-++..|+.-....+..+.+ .|..+ =||+.=.-|.||-..=.+.+.. +|||+|-
T Consensus 133 ~~~~~yd~~Lr~~~~~~a~~~~~~~~~Gvy~~~~GP~FeT~AE~r~~~~------------------------~Gad~Vg 188 (248)
T TIGR01699 133 SLANAYDAEYRALLQKVAKEEGFPLTEGVFVSYPGPNFETAAEIRMMQI------------------------IGGDVVG 188 (248)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCceeeEEEEEeeCCCcCCHHHHHHHHH------------------------cCCcEEc
Confidence 3444577666666666544 34433 2777767788875421222221 2666664
Q ss_pred cCCCeecccchHHHHHHHHhCCCcEEecccCCc
Q psy17541 606 SNGAVMSRAGTAQVSLVARAFNVPVLAACETHK 638 (717)
Q Consensus 606 aNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyK 638 (717)
-. +.+.|.+|+++++||.+++--.-
T Consensus 189 Ms--------~vpEa~~A~~~g~~~~~i~~Vtn 213 (248)
T TIGR01699 189 MS--------VVPEVISARHCDLKVVAVSAITN 213 (248)
T ss_pred cc--------hhHHHHHHHHCCCcEEEEEEEee
Confidence 43 47899999999999998875443
No 462
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=27.42 E-value=2.3e+02 Score=29.49 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=48.3
Q ss_pred EcCCCCchhHHHHHHHHHhCCCcEEEEcc---hH---HHHHhhhccEEEEceeeEecC-----------CCeecccchHH
Q psy17541 556 IVDGSPWYEGKEMLRRLVKHQVDCSYVLL---SA---VSYIMREVSKVIIGAHALLSN-----------GAVMSRAGTAQ 618 (717)
Q Consensus 556 VvESRP~~EGr~lA~~L~~~GI~vTyI~D---SA---VsyiM~~VdkVLLGAdaVlaN-----------G~VvNKiGT~~ 618 (717)
|+-..+..+...+++.|.+.||++--|+. .+ +..+-++..-+++||-.|+.- -.+++..-.-.
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~ 92 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPE 92 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 33444566778889999999987665553 33 223333455688888776531 12455555666
Q ss_pred HHHHHHhCCCcEEe
Q psy17541 619 VSLVARAFNVPVLA 632 (717)
Q Consensus 619 VALaAK~~~VPVyV 632 (717)
++-.|+++++|++-
T Consensus 93 v~~~~~~~~i~~iP 106 (204)
T TIGR01182 93 LAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHcCCcEEC
Confidence 77777777777764
No 463
>TIGR01703 hybrid_clust hydroxylamine reductase. This model represents a family of proteins containing an unusual 4Fe-2S-2O hydrid cluster. Earlier reports had proposed a 6Fe-6S prismane cluster. This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N-terminus of the protein. Members have been described as monomeric. The function is unknown, but is almost certain to involve oxidoreductase enzymatic activity. Members are found in E. coli and other bacteria, in Archaea, and in several parasitic eukaryotes: Giardia intestinalis, Trichomonas vaginalis, and Entamoeba histolytica.
Probab=27.26 E-value=7e+02 Score=29.80 Aligned_cols=110 Identities=15% Similarity=0.034 Sum_probs=65.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17541 439 PSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLP-NDITDTQARLRLKEVIATYIHEQVDMAGNAICM 517 (717)
Q Consensus 439 p~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~~l~-~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~ 517 (717)
+....+-.-|.--|+-.+.|..++|-++..=..+-+++...+.... +..|.+++...+.+....-. ....+..
T Consensus 121 ~dvasLqDLLIygLKGiAaYa~hAr~LGi~d~eVd~fI~eALfsTiTNvfD~e~Ll~~vLe~G~~n~------~~m~ll~ 194 (522)
T TIGR01703 121 DDVNSLRDLLLYGIKGIAAYLYHARELGYDDEEIYAFLEEALASTLTNVFDADELIDLALEVGKMNL------EAMKLLD 194 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 3444444455567888888888888665543445556665554322 22566666655555444221 1223344
Q ss_pred HHHhhc-------------cCCCeEEEecCchHHHHHHHHHHHcCCeeEEE
Q psy17541 518 FFHNKL-------------ANDDVILTYGCSSLVEKILLTAHEKGTKFRVI 555 (717)
Q Consensus 518 ~A~e~I-------------~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVI 555 (717)
.+.+-. .+|+.||+||+.-.....|..+.+ ++-+.||
T Consensus 195 ~~~~~~fG~P~pt~v~~g~~~~~~IlV~GHd~~~~~~ll~~~~-~~GInvy 244 (522)
T TIGR01703 195 KANTETYGLPEPTEVNIGTTEGKAILVSGHDLKDLEELLEQTE-GTGINVY 244 (522)
T ss_pred HHHhccCCCCceeeecccccCCCceEEECCChHHHHHHHHHHh-cCCeeEE
Confidence 443322 367899999999877777766643 6778888
No 464
>KOG3349|consensus
Probab=27.19 E-value=1.1e+02 Score=31.19 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=41.6
Q ss_pred hhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCC
Q psy17541 521 NKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQV 577 (717)
Q Consensus 521 e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI 577 (717)
+.|++-|.|+-|+-+.+++.+|+ .|+.+-|+|-|+-=.+.-.++|..|.+.|.
T Consensus 76 e~I~~AdlVIsHAGaGS~letL~----l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 76 EDIRSADLVISHAGAGSCLETLR----LGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHHhhccEEEecCCcchHHHHHH----cCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 34556677778877766565554 679999999999888888899999999985
No 465
>PRK07777 aminotransferase; Validated
Probab=27.11 E-value=6.8e+02 Score=27.27 Aligned_cols=99 Identities=19% Similarity=0.335 Sum_probs=49.8
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcc-----------hHHHHHhh-hc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL-----------SAVSYIMR-EV 594 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~D-----------SAVsyiM~-~V 594 (717)
.+|+|.|.+..+..++......|. +|++. +|.+.+... .+...|..+..+.. ..+-..+. ++
T Consensus 87 ~i~~t~G~~~al~~~~~~~~~~gd--~vli~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGLVEPGD--EVLLI--EPYYDSYAA--VIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRT 160 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCCC--EEEEe--CCCchhhHH--HHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCccc
Confidence 588999988877665554433332 45553 377766533 33345766555432 11222222 23
Q ss_pred cEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 595 SKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 595 dkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
..|+|- .---.-|.+++.---..++-+|+.+++.+++
T Consensus 161 ~~v~l~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 197 (387)
T PRK07777 161 RALIVN-SPHNPTGTVLTAAELAAIAELAVEHDLLVIT 197 (387)
T ss_pred EEEEEc-CCCCCCCccCCHHHHHHHHHHHHhcCcEEEE
Confidence 333321 1111123333333334566778888987765
No 466
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=27.05 E-value=9.2e+02 Score=26.95 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=53.5
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHH-HHHHHH-HhCCCcEEEEcch-------HHHHHh-hhccE
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGK-EMLRRL-VKHQVDCSYVLLS-------AVSYIM-REVSK 596 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr-~lA~~L-~~~GI~vTyI~DS-------AVsyiM-~~Vdk 596 (717)
.+++|-|.+..+..++. |......-+|++.+ |.+... ..++.+ ...|+++.++... .+-..+ +++..
T Consensus 131 ~v~~~~g~t~~~~~~~~-a~~~~~g~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~ 207 (447)
T PRK00451 131 NASMYDGATALAEAALM-AVRITKRKKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAA 207 (447)
T ss_pred eEEecCcHHHHHHHHHH-HHHhcCCCEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEE
Confidence 46677766665554444 43212233677754 444432 233333 3468998888643 132333 24444
Q ss_pred EEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 597 VIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
|++.. . ...|.+ .. --.|+-+|++++++|+|
T Consensus 208 v~l~~-p-n~tG~v-~~--l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 208 VVVQY-P-NFFGVI-ED--LEEIAEIAHAGGALFIV 238 (447)
T ss_pred EEEEC-C-CCCCee-CC--HHHHHHHHHHCCCEEEE
Confidence 55543 2 334433 33 34578899999999988
No 467
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=27.02 E-value=2.5e+02 Score=34.00 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhCCCcEEEE-------cchH-HHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhC-CCcEEecc
Q psy17541 564 EGKEMLRRLVKHQVDCSYV-------LLSA-VSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAF-NVPVLAAC 634 (717)
Q Consensus 564 EGr~lA~~L~~~GI~vTyI-------~DSA-VsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~-~VPVyV~c 634 (717)
.+...|+.|.+.||.||+| +|-+ +--+.++-+.|| .+++|.+..-.|+..+-.++.+. .+||+.++
T Consensus 515 ~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~v-----tlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lg 589 (627)
T COG1154 515 EALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVV-----TLEENVVDGGFGSAVLEFLAAHGILVPVLNLG 589 (627)
T ss_pred HHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeEE-----EEecCcccccHHHHHHHHHHhcCCCCceEEec
Confidence 3445667888899999887 3555 444445566664 56888889999999887776663 59999877
Q ss_pred cCCcccc
Q psy17541 635 ETHKFCE 641 (717)
Q Consensus 635 EtyKFs~ 641 (717)
--..|-+
T Consensus 590 lpd~fi~ 596 (627)
T COG1154 590 LPDEFID 596 (627)
T ss_pred CChHhhc
Confidence 6655544
No 468
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=26.94 E-value=4.9e+02 Score=26.98 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=60.0
Q ss_pred CCeEEEecCchHHHHHHHHHHHcCCe--eEEEEcCCCCch---hH---HHHHHHHHhCCCcEEEEc--------------
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKGTK--FRVIIVDGSPWY---EG---KEMLRRLVKHQVDCSYVL-------------- 583 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~Gk~--FrVIVvESRP~~---EG---r~lA~~L~~~GI~vTyI~-------------- 583 (717)
..+||+||-.+.+...+... |.. +++.=.++-+.. -+ ..++..|.+.|+++.-++
T Consensus 38 ~~vvlVhGgg~~~~~~~~~~---g~~~g~~~~~~~~l~~~~~~~~~ln~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~ 114 (252)
T cd04241 38 EKLVLVHGGGSFGHPKAKEY---GLPDGDGSFSAEGVAETHEAMLELNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVS 114 (252)
T ss_pred CCEEEEECCCcccCHHHHHh---CCCcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHCCCCeEEEChHHeEEecCCeeee
Confidence 36999999777655444322 221 111100000000 12 245677888899876332
Q ss_pred --chHHHHHhhhccEEEEceeeEec-CCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 584 --LSAVSYIMREVSKVIIGAHALLS-NGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 584 --DSAVsyiM~~VdkVLLGAdaVla-NG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
-..+..+|..--.+++.-|.++. +|.+.|--+=...+++|...+.--++.
T Consensus 115 ~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ 167 (252)
T cd04241 115 FDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIF 167 (252)
T ss_pred ecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEE
Confidence 33445555554566775576554 466777777888889999998765543
No 469
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=26.93 E-value=1.3e+02 Score=29.89 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCcEEEEcchHHH-HHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 567 EMLRRLVKHQVDCSYVLLSAVS-YIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 567 ~lA~~L~~~GI~vTyI~DSAVs-yiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
.+++.|.. |+.|.++....+. .-+.+.|.||||+-. . .|.+...+..+.--....-.++||.+.|
T Consensus 20 ~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi-~-~G~~~~~~~~fl~~~~~~l~~K~v~~F~ 85 (177)
T PRK11104 20 YIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASI-R-YGHFHSALYKFVKKHATQLNQMPSAFFS 85 (177)
T ss_pred HHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECcc-c-cCCcCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34555555 7777776654332 235678999999944 3 3555544545444444445688988776
No 470
>PRK10637 cysG siroheme synthase; Provisional
Probab=26.92 E-value=2.8e+02 Score=31.88 Aligned_cols=95 Identities=15% Similarity=0.027 Sum_probs=64.2
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeE
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHAL 604 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaV 604 (717)
.|-.||+.|-+.+..+=+....+.|-+++||-.+-.|. ++.|...| .++++.-.-....+..+++||...|-=
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~------~~~l~~~~-~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQ------FTAWADAG-MLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHH------HHHHHhCC-CEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 57889999999987776666666788888875443222 23454444 467776555555667788877765433
Q ss_pred ecCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 605 LSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 605 laNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
--| ..|+-.|+..+++|.|+-.
T Consensus 84 ~~n---------~~i~~~a~~~~~lvN~~d~ 105 (457)
T PRK10637 84 AVN---------QRVSEAAEARRIFCNVVDA 105 (457)
T ss_pred HHh---------HHHHHHHHHcCcEEEECCC
Confidence 222 5688899999999988753
No 471
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=26.89 E-value=1.7e+02 Score=30.03 Aligned_cols=27 Identities=4% Similarity=0.041 Sum_probs=20.7
Q ss_pred ecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 611 MSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 611 vNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
.|..|+..++-+|+..++.|+.++-.+
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~~ 102 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTDY 102 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeeee
Confidence 456789999988988888887766543
No 472
>PRK07505 hypothetical protein; Provisional
Probab=26.79 E-value=7.1e+02 Score=27.46 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=53.2
Q ss_pred CeEEEecCchHHHHHHHHHHH---cCCeeEEEEcCCCCchhHHH-HHHHHHhCCCcEEEEcc---hHHHHHhhhccEEEE
Q psy17541 527 DVILTYGCSSLVEKILLTAHE---KGTKFRVIIVDGSPWYEGKE-MLRRLVKHQVDCSYVLL---SAVSYIMREVSKVII 599 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e---~Gk~FrVIVvESRP~~EGr~-lA~~L~~~GI~vTyI~D---SAVsyiM~~VdkVLL 599 (717)
+.+++.+.+..++.+|..+.. .+.+..||+.+. .+.|-. ....+...+.++..++. .++...+..-+.+++
T Consensus 107 ~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~--~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~~~~~~v 184 (402)
T PRK07505 107 SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDK--NAHASLNILKGICADETEVETIDHNDLDALEDICKTNKTVAY 184 (402)
T ss_pred CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEch--hhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhcCCCEEE
Confidence 666666666777777755432 222334655553 222321 11223334556666642 234444432223333
Q ss_pred ceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 600 GAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 600 GAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
=.+.+...|+++. -..+.-+|++|++.+++
T Consensus 185 l~~p~~~~G~~~~---~~~i~~l~~~~~~~li~ 214 (402)
T PRK07505 185 VADGVYSMGGIAP---VKELLRLQEKYGLFLYI 214 (402)
T ss_pred EEecccccCCcCC---HHHHHHHHHHcCCEEEE
Confidence 3466777787776 35667788899876554
No 473
>PRK11071 esterase YqiA; Provisional
Probab=26.75 E-value=4.5e+02 Score=26.19 Aligned_cols=83 Identities=14% Similarity=0.226 Sum_probs=47.4
Q ss_pred eEEEecCchHHHH----HHHHHH-HcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhh---ccEEEE
Q psy17541 528 VILTYGCSSLVEK----ILLTAH-EKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMRE---VSKVII 599 (717)
Q Consensus 528 vILTyg~SStV~~----vL~~A~-e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~---VdkVLL 599 (717)
+|+.||+.+.... .+.... +.+..|+|++.|-+.. |..++..|. .++.. -+.+++
T Consensus 4 illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~--~~~~~~~l~---------------~l~~~~~~~~~~lv 66 (190)
T PRK11071 4 LLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY--PADAAELLE---------------SLVLEHGGDPLGLV 66 (190)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC--HHHHHHHHH---------------HHHHHcCCCCeEEE
Confidence 7899997543221 233332 3456899999998755 333333221 12221 134444
Q ss_pred ceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCc
Q psy17541 600 GAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHK 638 (717)
Q Consensus 600 GAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyK 638 (717)
| +..|.+....+|..++++++++++...
T Consensus 67 G-----------~S~Gg~~a~~~a~~~~~~~vl~~~~~~ 94 (190)
T PRK11071 67 G-----------SSLGGYYATWLSQCFMLPAVVVNPAVR 94 (190)
T ss_pred E-----------ECHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4 335666666777777777877777654
No 474
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=26.70 E-value=5.3e+02 Score=24.04 Aligned_cols=99 Identities=17% Similarity=0.317 Sum_probs=61.0
Q ss_pred CeEEEecCchHHHHHHHHHHHcCC-eeEEE---EcC----CC-Cchh----H----HHHHHHHHhC--CCcEEEEcchH-
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGT-KFRVI---IVD----GS-PWYE----G----KEMLRRLVKH--QVDCSYVLLSA- 586 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk-~FrVI---VvE----SR-P~~E----G----r~lA~~L~~~--GI~vTyI~DSA- 586 (717)
..|+..|.+++=-.++......|. +|.++ ++| .| +++. | ..+.+.|.+. +++++.+....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 478999998776666666666675 34444 222 33 2221 4 2456667665 67777765433
Q ss_pred ---HHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 587 ---VSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 587 ---VsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
...++..+|.||...|.+- -...+.-.|+.+++|++.+.
T Consensus 83 ~~~~~~~~~~~d~vi~~~d~~~---------~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 83 EENIEELLKDYDIVIDCVDSLA---------ARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHTSSEEEEESSSHH---------HHHHHHHHHHHTT-EEEEEE
T ss_pred cccccccccCCCEEEEecCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 5566678998877655432 23467778999999998764
No 475
>PRK12452 cardiolipin synthetase; Reviewed
Probab=26.70 E-value=3.8e+02 Score=31.43 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCeEEE--ecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhH-----HHHHHHHHhCCCc
Q psy17541 506 EQVDMAGNAICMFFHNKLANDDVILT--YGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG-----KEMLRRLVKHQVD 578 (717)
Q Consensus 506 ErI~~A~e~Ia~~A~e~I~dGdvILT--yg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EG-----r~lA~~L~~~GI~ 578 (717)
+.+..+.-.....|.+.| .|.| +.....+...|..|+.+|..+++++.+ +|..-+ +.....|.+.||+
T Consensus 343 ~~i~~~~l~~I~~A~~~I----~I~tpYf~pd~~l~~aL~~Aa~rGV~Vrii~p~-~~D~~~~~~a~~~~~~~L~~aGv~ 417 (509)
T PRK12452 343 KSIRNTLLAVMGSAKKSI----WIATPYFIPDQETLTLLRLSAISGIDVRILYPG-KSDSIISDQASQSYFTPLLKAGAS 417 (509)
T ss_pred HHHHHHHHHHHHHhhhEE----EEECCccCCCHHHHHHHHHHHHcCCEEEEEcCC-CCChHHHHHHHHHHHHHHHHcCCE
Q ss_pred EEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHH
Q psy17541 579 CSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQV 619 (717)
Q Consensus 579 vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~V 619 (717)
+...... ++=+-.++-||. +.-+||+.+
T Consensus 418 I~~y~~~------------~lHaK~~ivD~~-~a~vGS~Nl 445 (509)
T PRK12452 418 IYSYKDG------------FMHAKIVLVDDK-IATIGTANM 445 (509)
T ss_pred EEEecCC------------CeeeeEEEECCC-EEEEeCccc
No 476
>KOG1549|consensus
Probab=26.64 E-value=5e+02 Score=30.27 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhhcc--CCCeEEEecCchHHHHHHHHHHH-cC--CeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEE
Q psy17541 508 VDMAGNAICMFFHNKLA--NDDVILTYGCSSLVEKILLTAHE-KG--TKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYV 582 (717)
Q Consensus 508 I~~A~e~Ia~~A~e~I~--dGdvILTyg~SStV~~vL~~A~e-~G--k~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI 582 (717)
++.|++.|++ +|. +.|+|+|-|--....-+|+.-.. .+ .+-+||.+...-..- ..-++.|.+.|+.++|+
T Consensus 87 ~E~aR~~VAk----lInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v-~~s~~~l~~~g~~Vt~l 161 (428)
T KOG1549|consen 87 VEAAREQVAK----LINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCV-LDSCRALQEEGLEVTYL 161 (428)
T ss_pred HHHHHHHHHH----HhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcch-hHHHHHHHhcCeEEEEe
Confidence 4456666554 553 34688887776655555554322 12 222666666543333 24577899999999999
Q ss_pred cchHHHHHhh-------hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 583 LLSAVSYIMR-------EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 583 ~DSAVsyiM~-------~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+..--+++.- +-+-.+++.+.|..-=++++.+ --|..+|+..+|.|+|
T Consensus 162 pv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv--~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 162 PVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPV--KEIVKICREEGVQVHV 216 (428)
T ss_pred ccCccccccHHHHHHhcCCCceEEEEEecccCccccccH--HHHHHHhCcCCcEEEe
Confidence 9763332221 3466677777766554455444 3478899999996665
No 477
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=26.60 E-value=3.7e+02 Score=28.77 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCCeEEEecCchHHHHHHHH-HHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc-c----hHHHHHhhhccEEE
Q psy17541 525 NDDVILTYGCSSLVEKILLT-AHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL-L----SAVSYIMREVSKVI 598 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~-A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~-D----SAVsyiM~~VdkVL 598 (717)
.|.+||+.|-+..|-..|.. ..+.|...+|++++.++... ..+...+.. -.++++. | ..+..++.++|.||
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~-~~~~~~~~~--~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQ-WEMQQKFPA--PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH-HHHHHHhCC--CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 36788888888766555544 33445335777776443221 222333321 2333332 2 34666777888888
Q ss_pred EceeeEecC---CC-----eecccchHHHHHHHHhCCCcEEecccC
Q psy17541 599 IGAHALLSN---GA-----VMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 599 LGAdaVlaN---G~-----VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
--|-..... .. -+|-.|+..+.-+|+.+++.-+|...+
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 655321000 00 145579999999999998865554433
No 478
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=26.55 E-value=3.5e+02 Score=29.05 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=57.4
Q ss_pred eEEEecCchHH-HHHHHHHHHcCCeeEEEEcCCCCchhH---HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceee
Q psy17541 528 VILTYGCSSLV-EKILLTAHEKGTKFRVIIVDGSPWYEG---KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHA 603 (717)
Q Consensus 528 vILTyg~SStV-~~vL~~A~e~Gk~FrVIVvESRP~~EG---r~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAda 603 (717)
++||+|-.++- ...|+.|...|-.--|.|.| + .+.| ..+++.|.. ++-.+ ..|.||.|-.+
T Consensus 58 tvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d-~-~~~g~D~~~tA~~La~-----------ai~~~--~~DLVl~G~~s 122 (256)
T PRK03359 58 TALSVGGKALTNAKGRKDVLSRGPDELIVVID-D-QFEQALPQQTASALAA-----------AAQKA--GFDLILCGDGS 122 (256)
T ss_pred EEEEECCcchhhHHHHHHHHHcCCCEEEEEec-C-cccCcCHHHHHHHHHH-----------HHHHh--CCCEEEEcCcc
Confidence 68888877643 36799998888764444443 3 2333 456666653 23322 48999999888
Q ss_pred EecCCCeecccchHHHHHHHHhCCCcEEecccCC
Q psy17541 604 LLSNGAVMSRAGTAQVSLVARAFNVPVLAACETH 637 (717)
Q Consensus 604 VlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEty 637 (717)
+-.+.+.+ =+++|...|+|++-.+...
T Consensus 123 ~D~~tgqv-------g~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 123 SDLYAQQV-------GLLVGEILNIPAINGVSKI 149 (256)
T ss_pred ccCCCCcH-------HHHHHHHhCCCceeeEEEE
Confidence 76554322 3589999999988665543
No 479
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=26.51 E-value=7.5e+02 Score=26.01 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q psy17541 567 EMLRRLVKHQVDCSYVLLSAVSYIMREVSKVII 599 (717)
Q Consensus 567 ~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLL 599 (717)
.++..+.+.|+++.-|+-+.=+.+-+..|.||.
T Consensus 104 ~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ 136 (202)
T COG0794 104 NLAPKAKRLGAKLIAITSNPDSSLAKAADVVLV 136 (202)
T ss_pred HHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEE
Confidence 567888889999888886666666666777765
No 480
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=26.41 E-value=2.6e+02 Score=28.67 Aligned_cols=107 Identities=16% Similarity=0.096 Sum_probs=55.0
Q ss_pred EEEecCchHHHHHHH-HHHHcCCeeEEEEcCCCCchhHHHHHHHHHh-CCCcEEEE---cchHHHHHhhh--ccEEEEce
Q psy17541 529 ILTYGCSSLVEKILL-TAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK-HQVDCSYV---LLSAVSYIMRE--VSKVIIGA 601 (717)
Q Consensus 529 ILTyg~SStV~~vL~-~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~-~GI~vTyI---~DSAVsyiM~~--VdkVLLGA 601 (717)
||..|-++.|-..|. ...+.|..++|++++..........+..+.. .++.+... ....+..++.. +|.||-.|
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a 81 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFA 81 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEcc
Confidence 566666655544444 3444455578887764221111111222221 23433221 22355666765 88888776
Q ss_pred eeEecCC--------CeecccchHHHHHHHHhC--CCcEEeccc
Q psy17541 602 HALLSNG--------AVMSRAGTAQVSLVARAF--NVPVLAACE 635 (717)
Q Consensus 602 daVlaNG--------~VvNKiGT~~VALaAK~~--~VPVyV~cE 635 (717)
-.+..+- --+|-.|+..++-+|+.+ ++.++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss 125 (317)
T TIGR01181 82 AESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIST 125 (317)
T ss_pred cccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeec
Confidence 4332111 124667888888788775 456555543
No 481
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=26.41 E-value=2.9e+02 Score=25.80 Aligned_cols=72 Identities=17% Similarity=0.283 Sum_probs=40.0
Q ss_pred CCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEce
Q psy17541 525 NDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGA 601 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGA 601 (717)
++..|+..|.+..-..+.......| -.+|++.+.++. ....++..+...++.+.+... ..++.++|.||+..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLE-KAKALAERFGELGIAIAYLDL---EELLAEADLIINTT 89 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHH-HHHHHHHHHhhcccceeecch---hhccccCCEEEeCc
Confidence 4578888898765444444444444 346777765543 234556665544333333222 22356788887654
No 482
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=26.36 E-value=9.1e+02 Score=26.84 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCeEEEecCchHHHHHHHHHHHcC------CeeEEEEcCCCCchhHHHH-HHHHHhC--------CC--cEEEEcc---h
Q psy17541 526 DDVILTYGCSSLVEKILLTAHEKG------TKFRVIIVDGSPWYEGKEM-LRRLVKH--------QV--DCSYVLL---S 585 (717)
Q Consensus 526 GdvILTyg~SStV~~vL~~A~e~G------k~FrVIVvESRP~~EGr~l-A~~L~~~--------GI--~vTyI~D---S 585 (717)
+.++++-|-|.+++..|+.|.... .+-+|+..+. .+.|..+ +..+... ++ .+..++. .
T Consensus 97 ~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~--~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (406)
T PRK12381 97 DRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKN--AFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLN 174 (406)
T ss_pred CeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECC--CcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHH
Confidence 467778888888999988875421 2345665553 3555432 2222221 01 1233332 2
Q ss_pred HHHHHhh-hccEEEEceeeEecCCCeec--ccchHHHHHHHHhCCCcEEe
Q psy17541 586 AVSYIMR-EVSKVIIGAHALLSNGAVMS--RAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 586 AVsyiM~-~VdkVLLGAdaVlaNG~VvN--KiGT~~VALaAK~~~VPVyV 632 (717)
++..++. ++-.||+ +-|..+|+++. +-==..+.-+|++|++.+++
T Consensus 175 ~l~~~l~~~~aavii--EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~ 222 (406)
T PRK12381 175 SASALIDDQTCAVIV--EPIQGEGGVIPADKAFLQGLRELCDRHNALLIF 222 (406)
T ss_pred HHHHhccCCeeEEEE--eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3444443 4556666 67888888764 23334466789999998864
No 483
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=26.28 E-value=1.4e+02 Score=30.07 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=44.6
Q ss_pred eeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecc-------cchHHHHHHH
Q psy17541 551 KFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSR-------AGTAQVSLVA 623 (717)
Q Consensus 551 ~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNK-------iGT~~VALaA 623 (717)
++.|++..+.+. .+.+.|...|+.+.++.+. --+.++|.||++- +-.+. .+-..+..-+
T Consensus 3 ~~~i~~~~g~~~----~~~~~l~~~g~~~~~~~~~---~~l~~~dgiii~G-------G~~~~~~~~~~~~~~~~~i~~~ 68 (189)
T PRK13525 3 KIGVLALQGAVR----EHLAALEALGAEAVEVRRP---EDLDEIDGLILPG-------GESTTMGKLLRDFGLLEPLREF 68 (189)
T ss_pred EEEEEEcccCHH----HHHHHHHHCCCEEEEeCCh---hHhccCCEEEECC-------CChHHHHHHHHhccHHHHHHHH
Confidence 355666554433 3457788899999999873 2355677776653 32111 1111222234
Q ss_pred HhCCCcEEecccCCccc
Q psy17541 624 RAFNVPVLAACETHKFC 640 (717)
Q Consensus 624 K~~~VPVyV~cEtyKFs 640 (717)
...++||+-+|--+-+-
T Consensus 69 ~~~g~PilGIC~G~QlL 85 (189)
T PRK13525 69 IASGLPVFGTCAGMILL 85 (189)
T ss_pred HHCCCeEEEECHHHHHH
Confidence 45689999888666443
No 484
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=26.26 E-value=8.4e+02 Score=26.58 Aligned_cols=34 Identities=9% Similarity=0.225 Sum_probs=19.0
Q ss_pred EEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541 597 VIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632 (717)
Q Consensus 597 VLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV 632 (717)
+++-.+.+...++.+.. -..|+-+|+++++.++|
T Consensus 145 ~~v~v~~v~s~~G~i~p--l~eI~~l~~~~~~~liv 178 (370)
T PRK05937 145 IFIFVCSVYSFKGTLAP--LEQIIALSKKYHAHLIV 178 (370)
T ss_pred EEEEEecCCCCCCCccC--HHHHHHHHHHcCCEEEE
Confidence 33333444443333333 23577788889987765
No 485
>PRK12828 short chain dehydrogenase; Provisional
Probab=26.26 E-value=3.5e+02 Score=26.47 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=40.1
Q ss_pred CCCeEEEecCchHHHHHH-HHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc---chHHHHHhh-------h
Q psy17541 525 NDDVILTYGCSSLVEKIL-LTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL---LSAVSYIMR-------E 593 (717)
Q Consensus 525 dGdvILTyg~SStV~~vL-~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~---DSAVsyiM~-------~ 593 (717)
.|.+||..|-++.|-..| +...+.| .+|++++.++... ...+..|...++...... ...+..++. .
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G--~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG--ARVALIGRGAAPL-SQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC--CeEEEEeCChHhH-HHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 367888898877665444 4444455 4688887665322 234455655555433321 233333343 4
Q ss_pred ccEEEEce
Q psy17541 594 VSKVIIGA 601 (717)
Q Consensus 594 VdkVLLGA 601 (717)
+|.||-.|
T Consensus 83 ~d~vi~~a 90 (239)
T PRK12828 83 LDALVNIA 90 (239)
T ss_pred cCEEEECC
Confidence 67666654
No 486
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.25 E-value=3.7e+02 Score=22.67 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=33.1
Q ss_pred EEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCch----h-HHHHHHHHHhCCCcEEE
Q psy17541 529 ILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWY----E-GKEMLRRLVKHQVDCSY 581 (717)
Q Consensus 529 ILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~----E-Gr~lA~~L~~~GI~vTy 581 (717)
|+.+|-+-+-..+-..+.+.|..+.++....+++. + ...+.+.|.+.||++.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 67777776655666666667776666655555551 1 23566778888876543
No 487
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=26.18 E-value=2.2e+02 Score=32.12 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHcCCeeEEEEcCCCCchhH----HHHHHHHHh-C-CCcEEEEcchH--HHHHhhhccEEEEceeeEecC
Q psy17541 536 SLVEKILLTAHEKGTKFRVIIVDGSPWYEG----KEMLRRLVK-H-QVDCSYVLLSA--VSYIMREVSKVIIGAHALLSN 607 (717)
Q Consensus 536 StV~~vL~~A~e~Gk~FrVIVvESRP~~EG----r~lA~~L~~-~-GI~vTyI~DSA--VsyiM~~VdkVLLGAdaVlaN 607 (717)
.++..+|..|-+.+..+-+-+.++.=.+-| ..+++.+.+ . +|||.+-+|-+ .-.++.-++ .|-.+|+-|
T Consensus 29 e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~---~GFtSVMiD 105 (347)
T PRK13399 29 EQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIR---SGFTSVMMD 105 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHh---cCCCEEEEe
Confidence 456666666655555543334333223334 245555554 3 49999999977 455555555 588999999
Q ss_pred CCee-----------cccchHHHHHHHHhCCCcEE
Q psy17541 608 GAVM-----------SRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 608 G~Vv-----------NKiGT~~VALaAK~~~VPVy 631 (717)
|+-+ |-.=|-.++-.||.+||+|=
T Consensus 106 gS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 106 GSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 9988 78889999999999999876
No 488
>PRK14368 Maf-like protein; Provisional
Probab=26.04 E-value=3.6e+02 Score=27.75 Aligned_cols=92 Identities=18% Similarity=0.307 Sum_probs=53.4
Q ss_pred EEecCchHHHHHHHHHHHcCCeeEEEEc---CCCCchh-HHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 530 LTYGCSSLVEKILLTAHEKGTKFRVIIV---DGSPWYE-GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 530 LTyg~SStV~~vL~~A~e~Gk~FrVIVv---ESRP~~E-Gr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
|..+.+|--+.-|+.. .|..|.|+.. |+.+..+ -..++.+|+...-. ++..- .-+.++||||.|.
T Consensus 7 lILAS~SprR~eLL~~--~g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~-------~v~~~--~~~~~vI~aDTvV 75 (193)
T PRK14368 7 IVLASASPRRSELLAS--AGIEFDVVPADIPEEPLPGEEPVDHVLRLAREKAR-------AAAAL--AEGRFFIGADTIV 75 (193)
T ss_pred EEEeCCCHHHHHHHHH--CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHh--CCCCEEEEeCcEE
Confidence 3444544444444433 3889998844 4433322 34666666543211 11111 2367999999976
Q ss_pred -cCCCeecccchHHHH--HHHHhCCCcEEe
Q psy17541 606 -SNGAVMSRAGTAQVS--LVARAFNVPVLA 632 (717)
Q Consensus 606 -aNG~VvNKiGT~~VA--LaAK~~~VPVyV 632 (717)
-||.++.|-.+..=| |+-...|....|
T Consensus 76 ~~~g~ilgKP~~~~eA~~~L~~lsG~~h~v 105 (193)
T PRK14368 76 VCDGEIMGKPKDEADAVRMLKKLSGVPHEV 105 (193)
T ss_pred EECCEEecCCCCHHHHHHHHHHhCCCCcEE
Confidence 599999999998766 555555554433
No 489
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=25.91 E-value=7.1e+02 Score=25.27 Aligned_cols=109 Identities=23% Similarity=0.213 Sum_probs=66.0
Q ss_pred HHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCC---------C-------chhHH----HHHHHHHh
Q psy17541 515 ICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGS---------P-------WYEGK----EMLRRLVK 574 (717)
Q Consensus 515 Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESR---------P-------~~EGr----~lA~~L~~ 574 (717)
++..+.++|.+ ..||..|.+.+-..++......|.. ++.++|.. - ..-|+ .+++.|.+
T Consensus 9 ~G~~~q~~L~~-s~VlviG~gglGsevak~L~~~GVg-~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~ 86 (198)
T cd01485 9 WGDEAQNKLRS-AKVLIIGAGALGAEIAKNLVLAGID-SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQE 86 (198)
T ss_pred cCHHHHHHHhh-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHH
Confidence 45556667765 7889999998767777777767754 34444322 1 11142 34556666
Q ss_pred CC--CcEEEEcc------hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 575 HQ--VDCSYVLL------SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 575 ~G--I~vTyI~D------SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
.+ +.++.+.. .-...+....|.|+...|. ..--..+.-.|+.+++||+.+.
T Consensus 87 lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~---------~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 87 LNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN---------YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC---------HHHHHHHHHHHHHcCCCEEEEE
Confidence 54 55555432 2244556788887755442 2223556678999999999864
No 490
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=25.87 E-value=6.5e+02 Score=28.00 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=30.4
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHhCCCcEEEEc
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVL 583 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~~GI~vTyI~ 583 (717)
++|+|.|....+..++....+.|. .|+| ++ |.+.+... .+...|+++..|+
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pgd--~Vlv-~~-P~y~~~~~--~~~~~g~~~~~v~ 193 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPGD--SVAV-ED-PCFLSSIN--MLRYAGFSASPVS 193 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCCC--EEEE-eC-CCcHHHHH--HHHHcCCeEEeec
Confidence 688888888876655555444443 3444 33 77766532 3334677776664
No 491
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=25.79 E-value=5.4e+02 Score=27.22 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=58.5
Q ss_pred HHHHHHHhhccCC--CeEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCc-----------hhHH----HHHHHHHhCC
Q psy17541 514 AICMFFHNKLAND--DVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPW-----------YEGK----EMLRRLVKHQ 576 (717)
Q Consensus 514 ~Ia~~A~e~I~dG--dvILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~-----------~EGr----~lA~~L~~~G 576 (717)
.++...+..+.+. |+|+|......+..... |..-|..|-++==+.++. ..|+ .+-+.....|
T Consensus 98 ~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~l-A~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G 176 (238)
T PRK08558 98 LIAPVVAERFMGLRVDVVLTAATDGIPLAVAI-ASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKG 176 (238)
T ss_pred HHHHHHHHHccCCCCCEEEEECcccHHHHHHH-HHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCc
Confidence 3444444444443 79999988887666544 333455544321011110 0111 0111222456
Q ss_pred CcEEEEcc--------hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecc
Q psy17541 577 VDCSYVLL--------SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634 (717)
Q Consensus 577 I~vTyI~D--------SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~c 634 (717)
=.|-+|-| .++..++++.+.-++|+-+++..|.. | .-.+...+++||+.+.
T Consensus 177 ~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~----~---~~~l~~~~~vpv~sl~ 235 (238)
T PRK08558 177 DRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEV----G---IDRAREETDAPVDALY 235 (238)
T ss_pred CEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch----H---HHHHhHhcCCCEEEEE
Confidence 66666655 34455566777788888777776532 1 2223344788887654
No 492
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=25.67 E-value=2.2e+02 Score=31.70 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=54.8
Q ss_pred eEEEecCchHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHHHh-CCCcEEEEcc---hHHHHH-hhhccEEEEcee
Q psy17541 528 VILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVK-HQVDCSYVLL---SAVSYI-MREVSKVIIGAH 602 (717)
Q Consensus 528 vILTyg~SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L~~-~GI~vTyI~D---SAVsyi-M~~VdkVLLGAd 602 (717)
.|+..|++..-..+...+.+.| +.|+++|..|.. +..+.+ .|+++.+.-. ..+-.+ +.++|.||+..+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~~-----~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEER-----LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCC--CcEEEEECCHHH-----HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 4778899887777777666555 466777765542 445544 5776665421 122222 456787777654
Q ss_pred eEecCCCeecccchHHHHHHHHhC-CCc-EEecccCCc
Q psy17541 603 ALLSNGAVMSRAGTAQVSLVARAF-NVP-VLAACETHK 638 (717)
Q Consensus 603 aVlaNG~VvNKiGT~~VALaAK~~-~VP-VyV~cEtyK 638 (717)
.- .-...+++.|+.+ +.+ +++.+.+..
T Consensus 75 ~~---------~~n~~~~~~~r~~~~~~~ii~~~~~~~ 103 (453)
T PRK09496 75 SD---------ETNMVACQIAKSLFGAPTTIARVRNPE 103 (453)
T ss_pred Ch---------HHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 31 2245577888886 444 444444433
No 493
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=25.66 E-value=2.2e+02 Score=30.23 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=44.3
Q ss_pred EEecCchHHHHHHHHHHH-cCCee---EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEe
Q psy17541 530 LTYGCSSLVEKILLTAHE-KGTKF---RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALL 605 (717)
Q Consensus 530 LTyg~SStV~~vL~~A~e-~Gk~F---rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVl 605 (717)
+++-|+.-+...+..+.+ .|.++ -||+.-+-|.|+-..-.+.+.. +|||+|-
T Consensus 127 ~~~~~d~~L~~~~~~~a~~~g~~~~~ggvy~~~~Gp~fet~ae~~~~~~------------------------~gad~V~ 182 (261)
T PRK08666 127 FTDPYCPELRKALITAARELGLTYHPGGTYVCTEGPRFETAAEIRMFRI------------------------LGGDLVG 182 (261)
T ss_pred CCcccCHHHHHHHHHHHHHCCCceEeccEEEEeeCCCcCCHHHHHHHHH------------------------cCCCEEc
Confidence 345566555555555543 34433 3466667788775421122211 2555553
Q ss_pred cCCCeecccchHHHHHHHHhCCCcEEeccc
Q psy17541 606 SNGAVMSRAGTAQVSLVARAFNVPVLAACE 635 (717)
Q Consensus 606 aNG~VvNKiGT~~VALaAK~~~VPVyV~cE 635 (717)
- -+..++.+|+++|+||.+++-
T Consensus 183 M--------e~~~e~~~A~~~gi~~~~i~~ 204 (261)
T PRK08666 183 M--------TQVPEAVLARELEMCYATVAI 204 (261)
T ss_pred c--------chHHHHHHHHHCCCcEEEEEE
Confidence 3 458899999999999998754
No 494
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.64 E-value=1.8e+02 Score=32.59 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=43.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHhCCCcEE-EEcchHHHHHhh--hccEEEEceeeEecCCCeecccchHHHHHHHHhCCC
Q psy17541 552 FRVIIVDGSPWYEGKEMLRRLVKHQVDCS-YVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNV 628 (717)
Q Consensus 552 FrVIVvESRP~~EGr~lA~~L~~~GI~vT-yI~DSAVsyiM~--~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~V 628 (717)
.+|.++-.-+...-.++.+.|.+.||++. .++|..+..+.. +...+ + ++...+.+..-.+.+.|++
T Consensus 156 ~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d~~~~~~~~~~~a~~~-~----------~~~~~~~~~A~~Le~r~gi 224 (396)
T cd01979 156 RSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPPRRYTDLPVIGPGTYV-L----------GIQPFLSRTATTLMRRRKC 224 (396)
T ss_pred CceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCCCChHHhhccCcceEE-E----------EeChhHHHHHHHHHHhcCC
Confidence 34444333333333678888999999997 777765554432 21111 1 2233345666788899999
Q ss_pred cEEecc
Q psy17541 629 PVLAAC 634 (717)
Q Consensus 629 PVyV~c 634 (717)
|++.+-
T Consensus 225 P~~~~~ 230 (396)
T cd01979 225 KLLSAP 230 (396)
T ss_pred CcccCC
Confidence 998754
No 495
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=25.61 E-value=2.9e+02 Score=27.59 Aligned_cols=77 Identities=12% Similarity=0.197 Sum_probs=43.6
Q ss_pred EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHH-HHHhhhccEEE-EceeeEecCCCeecccchHHHHHHHH-hCCCc
Q psy17541 553 RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAV-SYIMREVSKVI-IGAHALLSNGAVMSRAGTAQVSLVAR-AFNVP 629 (717)
Q Consensus 553 rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAV-syiM~~VdkVL-LGAdaVlaNG~VvNKiGT~~VALaAK-~~~VP 629 (717)
+|+|+|--+.+. ..+++.|.+.|+++.++..... ..-+...|.|| +|--.. ....+-. ..++.. ..++|
T Consensus 3 ~iliid~~dsf~-~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~------~~~~~~~-~~~i~~~~~~~P 74 (190)
T PRK06895 3 KLLIINNHDSFT-FNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDV------PRAYPQL-FAMLERYHQHKS 74 (190)
T ss_pred EEEEEeCCCchH-HHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCC------hHHhhHH-HHHHHHhcCCCC
Confidence 678888776654 4489999999999998873211 11234567666 332211 0112221 233322 34899
Q ss_pred EEecccCC
Q psy17541 630 VLAACETH 637 (717)
Q Consensus 630 VyV~cEty 637 (717)
|+=+|=-+
T Consensus 75 iLGIClG~ 82 (190)
T PRK06895 75 ILGVCLGH 82 (190)
T ss_pred EEEEcHHH
Confidence 99776433
No 496
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=25.55 E-value=5.6e+02 Score=24.15 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=50.6
Q ss_pred CeEEEecC---chHHHHHHHHHHHcCCeeEEEEcCC-CCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcee
Q psy17541 527 DVILTYGC---SSLVEKILLTAHEKGTKFRVIIVDG-SPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAH 602 (717)
Q Consensus 527 dvILTyg~---SStV~~vL~~A~e~Gk~FrVIVvES-RP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAd 602 (717)
|+++-+|- |+++..++... .+.++.++.++. -...+....++.+.+.|+++..+....-...-.....+. +..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~--~~~~v~~v~~~~g~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l~-~~~ 79 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEK--YGLNPLAVTVDNGFNSEEAVKNIKNLIKKGLDLDHLVINPEEMKDLQLARFK-AKV 79 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHH--hCCceEEEEeCCCCCCHHHHHHHHHHHHhCCCeEEEecCHHHHHHHHHHHHh-ccc
Confidence 55666643 34444444333 122444333443 223445667788776688876654332211111001110 110
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCcEEecccC
Q psy17541 603 ALLSNGAVMSRAGTAQVSLVARAFNVPVLAACET 636 (717)
Q Consensus 603 aVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEt 636 (717)
-.--...++.-...+.-.|+.+|+++++.++.
T Consensus 80 --~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~ 111 (154)
T cd01996 80 --GDPCWPCDTAIFTSLYKVALKFGIPLIITGEN 111 (154)
T ss_pred --CCCChhhhHHHHHHHHHHHHHhCcCEEEeCcC
Confidence 00011233444456667899999999987764
No 497
>PRK11175 universal stress protein UspE; Provisional
Probab=25.53 E-value=7e+02 Score=25.98 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred eEEEecCc-----------hHHHHHHHHHHHc-CCeeEEE-EcCCCCch--------------------hHHHHHHHHHh
Q psy17541 528 VILTYGCS-----------SLVEKILLTAHEK-GTKFRVI-IVDGSPWY--------------------EGKEMLRRLVK 574 (717)
Q Consensus 528 vILTyg~S-----------StV~~vL~~A~e~-Gk~FrVI-VvESRP~~--------------------EGr~lA~~L~~ 574 (717)
+++.+..| .++...+..|... +-.++|+ |.+..|.. .-..+...+..
T Consensus 155 Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (305)
T PRK11175 155 ILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQK 234 (305)
T ss_pred EEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCc---EEEEcchHHHHHhh-----hccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEec
Q psy17541 575 HQVD---CSYVLLSAVSYIMR-----EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAA 633 (717)
Q Consensus 575 ~GI~---vTyI~DSAVsyiM~-----~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~ 633 (717)
.|++ +.+.......-++. ++|.|++|++.- +++-...=.....-++++..+||+|+
T Consensus 235 ~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~---~~~~~~llGS~a~~v~~~~~~pVLvv 298 (305)
T PRK11175 235 FGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGR---TGLSAAFLGNTAEHVIDHLNCDLLAI 298 (305)
T ss_pred hCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCcc---CCCcceeecchHHHHHhcCCCCEEEE
No 498
>PRK07904 short chain dehydrogenase; Provisional
Probab=25.49 E-value=4.6e+02 Score=26.88 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=45.7
Q ss_pred ccCCCeEEEecCchHHHHHHHHHH-HcCCeeEEEEcCCCCchhHHHHHHHHHhCC-CcEEEEc-c----hH----HHHHh
Q psy17541 523 LANDDVILTYGCSSLVEKILLTAH-EKGTKFRVIIVDGSPWYEGKEMLRRLVKHQ-VDCSYVL-L----SA----VSYIM 591 (717)
Q Consensus 523 I~dGdvILTyg~SStV~~vL~~A~-e~Gk~FrVIVvESRP~~EGr~lA~~L~~~G-I~vTyI~-D----SA----VsyiM 591 (717)
+.++.+||+.|-|+-+-..|.... +.| .++|+++..++...-..++..|...| .++.++. | .+ +..++
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 456778888888877766665543 332 36888886555432345566676654 3555542 2 22 23333
Q ss_pred h--hccEEEEce
Q psy17541 592 R--EVSKVIIGA 601 (717)
Q Consensus 592 ~--~VdkVLLGA 601 (717)
. ++|.+|.++
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 2 588888766
No 499
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=25.49 E-value=5.6e+02 Score=27.03 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=62.5
Q ss_pred CeEEEecCchHHHHHHHHHHHcCCeeEE---------EEcCCCC--chh---H---HHHHHHHHhCCCcEEEEcc-----
Q psy17541 527 DVILTYGCSSLVEKILLTAHEKGTKFRV---------IIVDGSP--WYE---G---KEMLRRLVKHQVDCSYVLL----- 584 (717)
Q Consensus 527 dvILTyg~SStV~~vL~~A~e~Gk~FrV---------IVvESRP--~~E---G---r~lA~~L~~~GI~vTyI~D----- 584 (717)
..||+||-++.+...+... |...+. .|++.+- ..+ | ..+...|.+.|++..-++-
T Consensus 26 ~~VlVHGgg~~i~~~~~~~---gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~~ln~~iv~~L~~~Gi~a~~l~~~~~~~ 102 (257)
T cd04251 26 RLIVVHGGGNYVNEYLKRL---GVEPKFVTSPSGIRSRYTDKETLEVFVMVMGLINKKIVARLHSLGVKAVGLTGLDGRL 102 (257)
T ss_pred CEEEECCCHHHHHHHHHHc---CCCcEEEeCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecccccCCE
Confidence 5899999999877655433 322211 1222221 111 2 3566788888887543322
Q ss_pred ---------------------------------hHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEE
Q psy17541 585 ---------------------------------SAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVL 631 (717)
Q Consensus 585 ---------------------------------SAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVy 631 (717)
..+..++..-..++++.=..-.+|.++|--+=...+.+|...+..-+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~l 182 (257)
T cd04251 103 LEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERL 182 (257)
T ss_pred EEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEE
Confidence 33444555555677754334467888888777888889999887544
Q ss_pred ec
Q psy17541 632 AA 633 (717)
Q Consensus 632 V~ 633 (717)
++
T Consensus 183 i~ 184 (257)
T cd04251 183 IL 184 (257)
T ss_pred EE
Confidence 43
No 500
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=25.48 E-value=70 Score=31.97 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=26.1
Q ss_pred eEEEecC--chHHHHHHHHHHHcCCeeEEEEcCCCCchhHHHHHHHH
Q psy17541 528 VILTYGC--SSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRL 572 (717)
Q Consensus 528 vILTyg~--SStV~~vL~~A~e~Gk~FrVIVvESRP~~EGr~lA~~L 572 (717)
|+|+-.. ++....+|..+.+.| +.|+++=+||...-+.+++.|
T Consensus 9 TLL~~~~~~~~~~~~~l~~l~~~g--i~~~i~TgR~~~~~~~~~~~l 53 (221)
T TIGR02463 9 TLLDSHSYDWQPAAPWLTRLQEAG--IPVILCTSKTAAEVEYLQKAL 53 (221)
T ss_pred CCcCCCCCCcHHHHHHHHHHHHCC--CeEEEEcCCCHHHHHHHHHHc
Confidence 4555322 333467777776544 678888888887655555444
Done!