RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17541
(717 letters)
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha);
2.65A {Homo sapiens}
Length = 315
Score = 257 bits (659), Expect = 3e-80
Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 13/299 (4%)
Query: 414 VVRG-SNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNA 472
+ A VA + + + + + E +G L A+ L SV++ +
Sbjct: 14 MKEDPDMASAVAAIRTLLEFL----KRDKGETIQGLRANLTSAIETL-CGVDSSVAVSSG 68
Query: 473 VKHFKSHLTQLPNDITD-TQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILT 531
+ F ++ + +D ++ + + E ++ ++ N I H + + ILT
Sbjct: 69 GELFLRFISLASLEYSDYSKCKKIMIERGEL-FLRRISLSRNKIADLCHTFIKDGATILT 127
Query: 532 YGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIM 591
+ S +V ++L A +F V + + P GK+M + L V + VL +AV YIM
Sbjct: 128 HAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIM 187
Query: 592 REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFN 651
+ VI+GA ++ NG ++++ GT Q+++ A+A N P E+ KF N
Sbjct: 188 EKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP-----LN 242
Query: 652 ELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLR 710
+ P++ K ++ L D T L+T + T+L ++ ++V L
Sbjct: 243 QQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELI 301
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase,
hexamer, rossmann fold; 2.50A {Thermococcus
kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Length = 338
Score = 124 bits (314), Expect = 2e-31
Identities = 82/334 (24%), Positives = 141/334 (42%), Gaps = 42/334 (12%)
Query: 391 LSVTQPSEVHPAIYRLGVQYATGVVRG------SNARCVALLSAIKQMVCDYTTPSEKEY 444
V + E+ I + +RG S A + L ++ S+
Sbjct: 18 AVVKEVLEIAEKIKNM-------EIRGAGKIARSAAYALQL--QAEK--------SKATN 60
Query: 445 SRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYI 504
F + + A L + RP +VS+ NA+++ + D + + A
Sbjct: 61 VDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEF 120
Query: 505 HEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYE 564
+ A I F ++ + DVI+T+ S ++ TA E+G +VI+ + P ++
Sbjct: 121 IHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQ 180
Query: 565 GKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVAR 624
GK + L + + YV+ SA + M+ KV++GA ++ NGAV+++ GTA ++L A+
Sbjct: 181 GKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAK 240
Query: 625 AFNVPVLAACETHKFCERVQTDALVFNELGDPNELIS--------DKSAAKNWKSLAHLT 676
V + A ET+KF LV E+ DP E+I N
Sbjct: 241 EHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWN-------- 292
Query: 677 PLSLTYDITPSHLVTAVITELAIVPCTSVPVVLR 710
P +D+TP V +ITE I+P + +LR
Sbjct: 293 P---AFDVTPPEYVDVIITERGIIPPYAAIDILR 323
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii}
SCOP: c.124.1.5
Length = 276
Score = 118 bits (299), Expect = 5e-30
Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 27/254 (10%)
Query: 448 FEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQ 507
E+ + + K P S+ N + I T R LK A +
Sbjct: 44 LEDAIMELREEVVKVNPSMASLYNLARF-----------IPVTNRRDILKSR-ALEFLRR 91
Query: 508 VDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKE 567
++ A + + + DVI+T+ SS V +I+ TA E+ +F+VI+ + SP YEG
Sbjct: 92 MEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLH 151
Query: 568 MLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFN 627
+ R L ++ + + + RE S I+GA + +G V+++AGT ++L
Sbjct: 152 LARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENA 211
Query: 628 VPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPS 687
+P A ET+KF +++ ++ E +LI +N L +D+TP
Sbjct: 212 IPFYVAAETYKFHPTLKSGDVMLME----RDLIRGNVRIRN--------VL---FDVTPW 256
Query: 688 HLVTAVITELAIVP 701
V +ITEL IV
Sbjct: 257 KYVRGIITELGIVI 270
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural
genomics, translation initiation factor, AIF-2B subunit,
PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Length = 347
Score = 79.6 bits (197), Expect = 3e-16
Identities = 59/343 (17%), Positives = 120/343 (34%), Gaps = 76/343 (22%)
Query: 391 LSVTQPSEVHPAIYRLGVQYATGVVRG------SNARCVALLSAIKQMVCDYTTPSEKEY 444
+ EV AI + +VRG + A L ++
Sbjct: 32 VECKTHEEVAHAIKEM-------IVRGAPAIGVAAAFGYVL--GLRDYKTG--------- 73
Query: 445 SRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYI 504
+ + L + RP +V++ A+ + + + + A +
Sbjct: 74 --SLTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENADRENLFEILENE----ALKM 127
Query: 505 HEQVDMAGN-AICMFFHNKLANDDVILT-----------YGCSSLVEKILLTAHEKGTKF 552
+ D+ N AI + + ILT YG + V + A E G +
Sbjct: 128 AYE-DIEVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGV---IRAAVESGKRI 183
Query: 553 RVIIVDGSPWYEGKEMLRRL-----VKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALL 605
RV + P+ +G RL +K ++ + + ++M+ + V++GA +
Sbjct: 184 RVFADETRPYLQGA----RLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIA 239
Query: 606 SNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELIS---- 661
NG ++ GT ++++A+ N+P A +++ + E P E+
Sbjct: 240 LNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGN 299
Query: 662 ----DKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIV 700
+ N +D+T + L+TA+ITE ++
Sbjct: 300 RIAPEGVKVLNP-----------AFDVTENTLITAIITEKGVI 331
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage
pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB:
2yrf_A*
Length = 374
Score = 78.5 bits (194), Expect = 9e-16
Identities = 74/341 (21%), Positives = 126/341 (36%), Gaps = 69/341 (20%)
Query: 391 LSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVA----LLSAIKQMVCDYTTPSEKEYSR 446
L +T +V AI L VRG+ A + L A K E +
Sbjct: 54 LELTTKEDVFDAIVTL-------KVRGAPAIGITAAFGLALAAKD--------IETDNVT 98
Query: 447 GFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHE 506
F RL YLN RP ++++ A++ + + + + L + E A I
Sbjct: 99 EFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENAI-SVNEAKTNL-VHE--AIQIQV 154
Query: 507 QVDMAGN-AICMFFHNKLANDDVILT-----------YGCSSLVEKILLTAHEKGTKFRV 554
+ D I D I+T YG + A +K +
Sbjct: 155 E-DEETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAP---FYLAKQKDLGLHI 210
Query: 555 IIVDGSPWYEGKEMLRRL-----VKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSN 607
+ P +G RL ++ +D + + S ++ M+ ++S VI+GA + N
Sbjct: 211 YACETRPVLQGS----RLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAKN 266
Query: 608 GAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELIS------ 661
G ++ GT ++++A AF++P A F +V+ A + E DP E+
Sbjct: 267 GDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRT 326
Query: 662 --DKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIV 700
N +DITP L++ +ITE I+
Sbjct: 327 APSNVPVFNP-----------AFDITPHDLISGIITEKGIM 356
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein
structure initiative eukaryotic initiation factor; 2.10A
{Leishmania major} SCOP: c.124.1.5
Length = 383
Score = 76.1 bits (188), Expect = 6e-15
Identities = 69/357 (19%), Positives = 128/357 (35%), Gaps = 81/357 (22%)
Query: 391 LSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVA----LLSAIKQMVCDYTTPSEKEYSR 446
V ++ AI + VRG+ A V+ + A ++ + S +E
Sbjct: 43 DDVLTVEDIWSAIKEM-------RVRGAPAIAVSAALGIAVATQRKAANGELKSGRE--- 92
Query: 447 GFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHE 506
+ L + ++ RP +V++ N ++ K+ + +L + E +A ++
Sbjct: 93 -VQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVE-LAEAVYT 150
Query: 507 QVDMAGN---------AICMFFHNKLANDDVILT-----------YGCSSLVEKILLTA- 545
D+A N I + + ILT YG TA
Sbjct: 151 N-DVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYG----------TAL 199
Query: 546 ------HEKGTKFRVIIVDGS-PW--------YEGKEMLRRLVKHQVDCSYVLLSAVSYI 590
G RV + PW YE V+ + C+ + A S +
Sbjct: 200 GVVRQLFYDGKLERV-YACETRPWNQGARLTVYE-------CVQEDIPCTLICDGAASSL 251
Query: 591 MR--EVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDAL 648
M ++ V++GA + NG ++ GT +++ A+ V + A T + +
Sbjct: 252 MLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNH 311
Query: 649 VFNELGDPNELISDKSAAKNWKSLAHLTPLSLTY----DITPSHLVT-AVITELAIV 700
V E +P E+ ++ + + P + DITPS L+T +ITE +
Sbjct: 312 VEIEEREPTEITTNLVTK---QRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQ 365
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit
delta, structural GEN PSI, protein structure initiative;
1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Length = 351
Score = 72.7 bits (179), Expect = 8e-14
Identities = 78/343 (22%), Positives = 132/343 (38%), Gaps = 75/343 (21%)
Query: 391 LSVTQPSEVHPAIYRLGVQYATGVVRG------SNARCVALLSAIKQMVCDYTTPSEKEY 444
+ E+ AI +L VRG + A +AL A ++ E
Sbjct: 27 IECRNVEELADAIKKL-------AVRGAPALEAAGAYGIAL--AARE--------REFAD 69
Query: 445 SRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYI 504
+E L A +L RP +V++ ++ + + + + LR A +
Sbjct: 70 VDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALRE----AEKL 125
Query: 505 HEQVDMAGN-AICMFFHNKLANDDVILT-----------YGCSSLVEKILLTAHEKGTKF 552
E+ D+ N + + L + DV+LT +G + V + +A E+G +
Sbjct: 126 AEE-DVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGV---VRSAVEQGKEI 181
Query: 553 RVIIVDGSPWYEGKEMLRRL-----VKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALL 605
RVI + P +G RL ++ +D + + S V +M+ V KVI+GA ++
Sbjct: 182 RVIACETRPLNQGS----RLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIV 237
Query: 606 SNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELIS---- 661
+ V ++ GT VS+VA+ N+P A F +V E ELI
Sbjct: 238 RDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWERTAKDVVI-EERPREELIFCGKR 295
Query: 662 ----DKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIV 700
N +D TP VTA+ITE ++
Sbjct: 296 QIAPLNVKVYNP-----------AFDPTPLENVTALITEYGVI 327
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.7 bits (167), Expect = 5e-12
Identities = 92/504 (18%), Positives = 144/504 (28%), Gaps = 177/504 (35%)
Query: 251 EANVQNKPAQGSQDTPKPGGPPATLSNVDNKENVKSEGDEVKSKAQLKAERRAKQEQQRQ 310
+A V N + QD PK LS + + D V +L +KQE+ Q
Sbjct: 27 DAFVDNFDCKDVQDMPKS-----ILSKEEIDHIIM-SKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 311 AKAAALLEKTKTSNEK-SMTKSKTEDSKPASEKSSKTEVLKSKDPNVPSTKKYSGVDGVK 369
+L N K M+ KTE +P+ E + KY+
Sbjct: 81 KFVEEVLRI----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------ 130
Query: 370 ATPGTTLVHKVKLFNHLYRDNLSVTQPSE---VHPAIYRLGVQYATGVVRGSNARCVALL 426
V +++ + L R L +P++ + GV+ GS VAL
Sbjct: 131 -------VSRLQPYLKL-RQALLELRPAKNVLID------------GVL-GSGKTWVAL- 168
Query: 427 SAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLN--KC-RPHSV-SMLNAVKH------- 475
VC S + ++ + +LN C P +V ML + +
Sbjct: 169 -----DVCL---------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 476 -FKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLAN-----DDV- 528
H + + I QA LR + N +V
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRR--------------------LLKSKPYENCLLVLLNVQ 254
Query: 529 ---ILTY---GCSSLVEKILLTAHEKG--------TKFRVIIVDGSPWYEGKEMLRRLVK 574
C KILLT K T + + S E+ L+K
Sbjct: 255 NAKAWNAFNLSC-----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 575 HQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAAC 634
+ +DC L REV + +S++A + +
Sbjct: 310 Y-LDCRPQDLP------REVLTT----NPRR-------------LSIIAESIRDGL---- 341
Query: 635 ETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSL--TYDITPSHLVTA 692
T + V D L +I SL L P +D
Sbjct: 342 ATWDNWKHVNCDKL--------TTIIE--------SSLNVLEPAEYRKMFD--------- 376
Query: 693 VITELAIVPCTSVPVVLRVKPTET 716
L++ P S + PT
Sbjct: 377 ---RLSVFP-PSAHI-----PTIL 391
Score = 57.2 bits (137), Expect = 2e-08
Identities = 90/549 (16%), Positives = 170/549 (30%), Gaps = 138/549 (25%)
Query: 1 MTQDSPVKSDNTLTKSQK----RRNRKKLKTQKGI-----LSCGKAQDNPKSSTSEASTT 51
+ D+ V + +++ Q R+ +L+ K + L GK +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------TWVALDVC 171
Query: 52 RTHSSECPNQFKQEI-------RDTPLTESEDNVNLCYECSNQGPINNKGLLLHAALNDY 104
++ +C FK I ++P T E L Y+ I+ ++
Sbjct: 172 LSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLYQ------IDPNWTSRSDHSSNI 223
Query: 105 QSACQVSEQEVKQFFDSKGIYTYCSKPLSG--NKEIPLYSATGPSSCKAPQF-ISCAEQL 161
+ + E+++ SK Y C L N + A F +SC + L
Sbjct: 224 KLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKA----------WNA--FNLSC-KIL 269
Query: 162 IYTSPSSVQTTPASLSQVTTAIMSEKNNSAEL----SRDL------VKAQ---REAKKAA 208
+ T V LS TT +S ++S L + L + Q RE
Sbjct: 270 LTTRFKQVTD---FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 209 KLAAKQKAKVKGDVTAPPDAVTQPESKQSEPSKAKSKSEPSKEANVQNKPAQGSQ----- 263
A+ D A D K K + E S NV PA+ +
Sbjct: 327 PRRLSIIAESIRDGLATWD-----NWKHVNCDKLTTIIESS--LNVLE-PAEYRKMFDRL 378
Query: 264 -----DTPKPGGPPATLS---NVDNKENVKSEGDEVKSKAQLKAERRAKQEQQRQAKAAA 315
P LS K +V +++ + + E++ K E +
Sbjct: 379 SVFPPSAHIP---TILLSLIWFDVIKSDVMVVVNKLHKYSLV--EKQPK-ESTISIPSIY 432
Query: 316 LLEKTKTSNEKSMTKSKTEDSKPASEKSSKTEVLKSKDPNVPSTKKYS----GVDGVKAT 371
L K K NE ++ +S + + + S D P +Y G
Sbjct: 433 LELKVKLENEYALHRS-------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 372 PGTTLVHKVKLFNHLYRDNLSVTQPSEVHPAIYR-LGVQY-ATGVVRGSNARCVALLSAI 429
++ LF ++ D +R L + ++ + L +
Sbjct: 486 HP----ERMTLFRMVFLD--------------FRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 430 KQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQL----PN 485
K Y ++ +Y E + + +L K + + K+ + L ++ +
Sbjct: 528 KFYK-PYICDNDPKY----ERLVNAILDFLPKIEENLICS----KY--TDLLRIALMAED 576
Query: 486 D-ITDTQAR 493
+ I + +
Sbjct: 577 EAIFEEAHK 585
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage
pathway, translation initiation, oxidoreductase; 1.75A
{Saccharomyces cerevisiae} SCOP: c.124.1.5
Length = 191
Score = 51.1 bits (123), Expect = 2e-07
Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 23/152 (15%)
Query: 572 LVKHQVDCSYVLLSAVSYIMRE----VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFN 627
LV ++ + + S+++Y +R + +GA ++ NG ++ GT Q++++ + F
Sbjct: 26 LVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFG 85
Query: 628 VPVLAACETHKFCERVQTDALVFNELGDPNEL--ISDKSAAKNWKSLAHLTPLSLTY--- 682
+ +T + E +P E ++ SL
Sbjct: 86 IKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKV 145
Query: 683 --------------DITPSHLVTAVITELAIV 700
DITP L+ +ITE +
Sbjct: 146 GIAPLEINVWNPAFDITPHELIDGIITEEGVF 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 9e-06
Identities = 75/523 (14%), Positives = 155/523 (29%), Gaps = 162/523 (30%)
Query: 11 NTLTKSQKRRNRKKLKTQKGILSC-GKAQDNPKSSTSEASTTRTHSSECPNQFKQEIRDT 69
+ L + N L K ++ A+ ++ + +S
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITAR-----IMAKRPFDKKSNS------------- 143
Query: 70 PLTES--EDNVNLCYECSNQGPINN--KGLL-LHAALNDYQS--------ACQVSEQEVK 116
L + E N L QG ++ + L L+ Y + + + ++
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY---QTYHVLVGDLIKFSAETLSELIR 200
Query: 117 QFFDSKGIYTY---CSKPLSGNKEIP--LYSATGPSSCKAP--------QFISCAEQLIY 163
D++ ++T + L P Y + P SC P ++ A+ L +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--PLIGVIQLAHYVVTAKLLGF 258
Query: 164 TSPSSVQTTPASLS----QVTTAIMSEKNNSAELSRDLVKAQREAKKAAKL-----AAKQ 214
T P +++ + + TA+ + +S E + +KA +
Sbjct: 259 T-PGELRSYLKGATGHSQGLVTAVAIAETDSWE---SFFVS---VRKAITVLFFIGVRCY 311
Query: 215 KAKVKGDVTAPPDAVTQP-ESKQSEPS-----KAKSKSEPSKEANVQNKPAQGSQD---- 264
+A + + PP + E+ + PS ++ + N N +
Sbjct: 312 EAY--PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 265 ---TPKP---GGPPATLSNVDNKENVKSEGDEVKSKAQLKAERRAKQEQQRQAKAAALLE 318
K GPP +L ++ L R+AKA + L+
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNL---------------TL-----------RKAKAPSGLD 403
Query: 319 KTKT--SNEKSMTKSK---------TEDSKPASEK-----SSKTEVLKSKDPNVP--STK 360
+++ S K ++ + PAS+ +KD +P T
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT- 462
Query: 361 KYSGVD--GVKATPGTTLVHKVKLFNHLYRDNLSVTQPSEVH-PAIYRLGVQYATGVV-- 415
+ G D + + +V + + P V + AT ++
Sbjct: 463 -FDGSDLRVLSGSISERIVDCI------------IRLP--VKWETTTQFK---ATHILDF 504
Query: 416 -RGSNARCVALLSAIKQ-------MVCDYTTPSEKEYSRGFEE 450
G + L K + + +Y GF++
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY--GFKQ 545
Score = 40.0 bits (93), Expect = 0.004
Identities = 41/270 (15%), Positives = 83/270 (30%), Gaps = 72/270 (26%)
Query: 464 PHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHN-- 521
P + + L F +++ L Q L + + E + GN I H
Sbjct: 54 PTTPAELVG--KFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEGNDI----HALA 105
Query: 522 -KLANDD---------VILTY--GCSSLVEKI-------LLTAHEKGTKFRVIIVDG--- 559
KL ++ +I Y L A +G +++ + G
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQG 164
Query: 560 --SPWYEGKEMLRRLVKHQVDCSYV--LLSAVSYIMREVSKVIIGAHALLSNG----AVM 611
++E E LR L +Q V L+ + + E+ + + A + + G +
Sbjct: 165 NTDDYFE--E-LRDL--YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 612 SRAGTA--QVSLVARAFNVPVLAACETHKFCERVQTDALVFNELG-DPNELISDK----- 663
+ L++ + P++ + + + LG P EL S
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYV-------VTAKLLGFTPGELRSYLKGATG 272
Query: 664 -----------SAAKNWKSLAHLTPLSLTY 682
+ +W+S ++T
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Score = 38.1 bits (88), Expect = 0.013
Identities = 62/432 (14%), Positives = 113/432 (26%), Gaps = 159/432 (36%)
Query: 285 KSEGDEVKSKAQLKAERRAKQEQQR---QAKAAALLEKTKTSNEKSMT----KSKTED-- 335
+++ VK+K +K A+ +R + +AL N + + + T+D
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 336 ---------SKPASEK--SSKTEVLKSKDPNVPSTKKY--SGVD------GVKATPG--- 373
E L +K G++ TP
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 374 -------------TTLVHKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRG--S 418
L H Y + + P R ++ ATG +G +
Sbjct: 231 LLSIPISCPLIGVIQLAH--------Y---VVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 419 NARCVA-----------LLSAIK--------------------QMVCDYTTPSEKEYS-- 445
A +A + AI ++ D +E S
Sbjct: 280 -AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 446 ---RGFE-ERLGPAMSYLNKCRPH----SVSMLNAVKHF------------KSHLTQLPN 485
E++ ++ N P +S++N K+ L +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 486 DITDTQARLRLKE-----------VIATYIH--------EQV--DMAGNAICMFFHNKLA 524
Q+R+ E V + + H + + D+ N + F +
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPF-HSHLLVPASDLINKDLVKNNVS-FNAKDIQ 456
Query: 525 --------------NDDVILTYGCSSLVEKIL-LTAH-EKGTKFRVI-IVDGSPWYEGKE 567
I +V+ I+ L E T+F+ I+D P G
Sbjct: 457 IPVYDTFDGSDLRVLSGSIS----ERIVDCIIRLPVKWETTTQFKATHILDFGP---GGA 509
Query: 568 M-LRRLVKHQVD 578
L L D
Sbjct: 510 SGLGVLTHRNKD 521
Score = 36.2 bits (83), Expect = 0.051
Identities = 38/268 (14%), Positives = 78/268 (29%), Gaps = 94/268 (35%)
Query: 528 VILTYG---CSSLV-EKILLTAHEKGTKFRVIIVDGSPWYEGK-------EMLRR---LV 573
+ L++G LV A + +F I+ + + + E++ + V
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 574 KHQVDCSYVLLSAVSYIMREVSKVIIGA-----------HALLSNGAVMSRAGTAQVSLV 622
V+ S + +V + + HAL + + + +
Sbjct: 69 SSLVEPS----KVGQF--DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 623 ARAFNVPVLAACE-THKFCERVQTDALV-----------------------FNELGD--- 655
+ + + A + ++ AL F EL D
Sbjct: 123 IKNY----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 656 -PNELISD--KSAAKNWKSLAHLTP-----LSLTYDI---------TPS--HLVTA---- 692
+ L+ D K +A+ L T + +I TP +L++
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 693 ---VITELA--IVPCTSVPVVLRVKPTE 715
+ +LA +V +L P E
Sbjct: 239 PLIGVIQLAHYVVTA----KLLGFTPGE 262
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.1 bits (98), Expect = 2e-04
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 34/110 (30%)
Query: 229 VTQPESKQSEPSKAKSKSEPSKEANVQNKPAQGSQDTPKPGGPPATLSNVDNKENVKSEG 288
+ Q + EP + K Q K L +D V +
Sbjct: 74 IAQADRLTQEPESIR------KWREEQRK----------------RLQELDAASKVMEQ- 110
Query: 289 DEVKSKAQLKAERRAKQEQQRQAKAAALLEKTKTSN---EKSMTKSKTED 335
E + KA ++ +E ++ +EK K +N +K+ + D
Sbjct: 111 -EWREKA-----KKDLEEWNQRQSEQ--VEKNKINNRIADKAFYQQPDAD 152
Score = 35.5 bits (81), Expect = 0.029
Identities = 8/83 (9%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 286 SEGDEVKSKAQLKAERRAKQEQQ---RQAKAAALLEKTKTSNEKSM---------TKSKT 333
++ D + + + + R +Q ++ A + + ++ + +K + K
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 334 EDSKPASEKSSKTEVLKSKDPNV 356
+ + ++K + D ++
Sbjct: 135 KINNRIADK----AFYQQPDADI 153
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage
pathway, translation initiation, oxidoreductase; 1.75A
{Saccharomyces cerevisiae} SCOP: c.124.1.5
Length = 211
Score = 30.4 bits (69), Expect = 1.3
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 25/141 (17%)
Query: 401 PAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLN 460
PAI + + V+ + D T + L + +L
Sbjct: 54 PAI---AIVGSLSVL-------TEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLL 103
Query: 461 KCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGN------- 513
RP +V++ N++ K+ L D+ L V + ++ D+A N
Sbjct: 104 SSRPTAVNLSNSLVEIKNILKSSS-DLKAFDGSL-YNYVCE--LIDE-DLANNMKMGDNG 158
Query: 514 --AICMFFHNKLANDDV-ILT 531
+ D+ +LT
Sbjct: 159 AKYLIDVLQKDGFKDEFAVLT 179
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 30.5 bits (68), Expect = 1.5
Identities = 13/68 (19%), Positives = 22/68 (32%)
Query: 201 QREAKKAAKLAAKQKAKVKGDVTAPPDAVTQPESKQSEPSKAKSKSEPSKEANVQNKPAQ 260
Q+ + L Q + + PP + KQ K E K+ + KP +
Sbjct: 43 QQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
Query: 261 GSQDTPKP 268
+ K
Sbjct: 103 RQRMALKL 110
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 30.5 bits (68), Expect = 1.6
Identities = 22/154 (14%), Positives = 45/154 (29%), Gaps = 26/154 (16%)
Query: 517 MFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWY--EGKEMLRRLVK 574
+ + + G L +L +H G RV +V+ P ++++ L
Sbjct: 114 EAALGRFRRGERAVFIGGGPLPLTGILLSHVYGM--RVNVVEIEPDIAELSRKVIEGLGV 171
Query: 575 HQVDCSYVLLSAVSYIMREVSKVIIGAHA-------------LLSNGAVMSRAGTAQVSL 621
V+ + E +++ A A + + ++ R T
Sbjct: 172 DGVN--VITGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTG---- 225
Query: 622 VARAFNVPVLAACETHKF--CERVQTDALVFNEL 653
RA ++ + F V V N
Sbjct: 226 -MRAILYAPVSDDDITGFRRAGVVLPSGKVNNTS 258
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 30.5 bits (68), Expect = 2.1
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 10/63 (15%)
Query: 578 DCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVL-AACET 636
+ L+AV V +G + A V + VP+L A
Sbjct: 61 SDTAAPLAAVDLKWEHSPAVFLGP--------GCVYS-AAPVGRFTAHWRVPLLTAGAPA 111
Query: 637 HKF 639
Sbjct: 112 LGI 114
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 30.2 bits (68), Expect = 2.8
Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 6/186 (3%)
Query: 174 ASLSQVTTAIMSEKNNSAELSRDLVKAQREAKKAAKLAAKQKAKVKGDVTAPPDAVTQPE 233
+ + E+ E DL E ++ AK K K K + ++ + + E
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 234 SKQSEPSKAKSKSEPSKEANVQN-----KPAQGSQDTPKPGGPPATLSNVDNKENVKSEG 288
+ E K K K E + + + ++ +
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112
Query: 289 DEVKSKAQLKAERRAKQEQQRQAKAA-ALLEKTKTSNEKSMTKSKTEDSKPASEKSSKTE 347
+ +K +L++ QE KAA EK K + + KTE +++ E
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172
Query: 348 VLKSKD 353
+ S
Sbjct: 1173 LRGSDY 1178
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 29.2 bits (65), Expect = 4.2
Identities = 12/53 (22%), Positives = 18/53 (33%)
Query: 523 LANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKH 575
++DV L + + E K+ V V GSPW + H
Sbjct: 80 FCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLNHSVTAQALH 132
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 29.2 bits (66), Expect = 5.1
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 554 VIIVDGSPWYEGKEMLRR-LVKHQV---DCSYVLLSAV 587
++ V+ SP+ K+ R LV+ + C+ L+ +
Sbjct: 184 LLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMI 221
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 28.1 bits (62), Expect = 5.2
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 266 PKPGGPPATLSNVDNKENVKSEGDEVKSKAQLKAERRAKQEQQRQAKAAALLEKTKTSNE 325
P G P +++ + + E E++ K + ERR QE + A E + +
Sbjct: 25 PSFDGVPEFNASLPRRRDPSLE--EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 82
Query: 326 KSMTKSKTEDSKPASEKSSKTEVLKSK 352
K++ ++ + + K E K
Sbjct: 83 KAIEENNNFIKMAKEKLAQKMESNKEN 109
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 29.5 bits (65), Expect = 5.4
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 1/98 (1%)
Query: 272 PATLSNVDNKENVKSEGDEVKSKAQLKAERRAKQEQQRQAKAAALLEKTKTSNEKSMTKS 331
PA L+ D K + + + LEK K + EK +
Sbjct: 14 PADLATALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKP-KED 72
Query: 332 KTEDSKPASEKSSKTEVLKSKDPNVPSTKKYSGVDGVK 369
K +KP + K+ E + T GV+
Sbjct: 73 KPAAAKPETPKTVTPEWQTVEKKEQQGTVTIREEKGVR 110
>3d19_A Conserved metalloprotein; structural genomics, unknown function,
PSI-2, protein struct initiative, nysgxrc; 2.30A
{Bacillus cereus} SCOP: a.29.13.1 a.29.13.1
Length = 283
Score = 28.7 bits (64), Expect = 7.1
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 15/58 (25%)
Query: 438 TPSEKEYSR-------GFEERLGPAMSYLNKCRPHSVSMLN--------AVKHFKSHL 480
+ + FE A SY N+ P + N + FK +
Sbjct: 39 RCEDTQLIEEANQFYRLFEHIEQIAHSYTNETDPEQIKRFNAEVQQAATNIWGFKRKI 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 7.2
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 10/32 (31%)
Query: 308 QRQAKAAALLEKTKTSNEKSMTKSKTEDSKPA 339
++QA L+K + S+ K +DS PA
Sbjct: 18 EKQA-----LKKL----QASL-KLYADDSAPA 39
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N*
1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M*
3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Length = 166
Score = 27.8 bits (62), Expect = 8.4
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 301 RRAKQE--QQRQAKAAALLEKTKTSNEKSMTKSKTEDSKPASEKSSKTEVLKSKDPNVPS 358
RRAK ++ + KAA + + + + + + AS+ ++ +
Sbjct: 100 RRAKLYYLRELRGKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEV 159
Query: 359 TKK 361
+
Sbjct: 160 APE 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.124 0.346
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,649,922
Number of extensions: 547992
Number of successful extensions: 1018
Number of sequences better than 10.0: 1
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 38
Length of query: 717
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 617
Effective length of database: 3,909,693
Effective search space: 2412280581
Effective search space used: 2412280581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (27.7 bits)