RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17541
(717 letters)
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 274
Score = 154 bits (391), Expect = 5e-43
Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 28/259 (10%)
Query: 448 FEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQ 507
E+ + + K P S+ N + I T R LK A +
Sbjct: 43 LEDAIMELREEVVKVNPSMASLYNLARF-----------IPVTNRRDILKSR-ALEFLRR 90
Query: 508 VDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKE 567
++ A + + + DVI+T+ SS V +I+ TA E+ +F+VI+ + SP YEG
Sbjct: 91 MEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLH 150
Query: 568 MLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFN 627
+ R L ++ + + + RE S I+GA + +G V+++AGT ++L
Sbjct: 151 LARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENA 210
Query: 628 VPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPS 687
+P A ET+KF +++ ++ E +LI +N + +D+TP
Sbjct: 211 IPFYVAAETYKFHPTLKSGDVMLME----RDLIRGNVRIRN-----------VLFDVTPW 255
Query: 688 HLVTAVITELAIV-PCTSV 705
V +ITEL IV P +
Sbjct: 256 KYVRGIITELGIVIPPRDI 274
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
[TaxId: 5664]}
Length = 374
Score = 156 bits (395), Expect = 2e-42
Identities = 65/337 (19%), Positives = 125/337 (37%), Gaps = 28/337 (8%)
Query: 391 LSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEE 450
V ++ AI + VRG+ A V+ I E + R +
Sbjct: 34 DDVLTVEDIWSAIKEM-------RVRGAPAIAVSAALGIAVATQRKAANGELKSGREVQT 86
Query: 451 RLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDM 510
L + ++ RP +V++ N ++ K+ + +L + E+ V
Sbjct: 87 FLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAF 146
Query: 511 AGNAICMFFHNKLAN---------------DDVILTYGCSSLVEKILLTAHEKGTKFRVI 555
+ + LA + L ++ G RV
Sbjct: 147 NEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVY 206
Query: 556 IVDGSPWYEG-KEMLRRLVKHQVDCSYVLLSAVSYIM--REVSKVIIGAHALLSNGAVMS 612
+ PW +G + + V+ + C+ + A S +M R++ V++GA + NG +
Sbjct: 207 ACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDTAN 266
Query: 613 RAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISD-KSAAKNWKS 671
+ GT +++ A+ V + A T + + V E +P E+ ++ + +
Sbjct: 267 KIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQRVVAD 326
Query: 672 LAHLTPLSLTYDITPSHLVT-AVITELAIV-PCTSVP 706
HL+ + +DITPS L+T +ITE + P S P
Sbjct: 327 GPHLSIWNPVFDITPSELITGGIITEKGVQAPAASAP 363
>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
isomerase Ypr118W {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 402
Score = 143 bits (360), Expect = 1e-37
Identities = 53/350 (15%), Positives = 115/350 (32%), Gaps = 55/350 (15%)
Query: 401 PAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLN 460
PAI + + V+ + D T + L + +L
Sbjct: 54 PAI---AIVGSLSVL-------TEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLL 103
Query: 461 KCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLR-----LKEVIATYIHEQVDMAGNAI 515
RP +V++ N++ K+ L + + + E +A + + A I
Sbjct: 104 SSRPTAVNLSNSLVEIKNILKSSSDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLI 163
Query: 516 CMFFHNKLANDDVILTYG----------------CSSLVEKILLTAHEKGTKFRVIIVDG 559
+ + ++ +LT SL + L + V ++
Sbjct: 164 DVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKCPRMGHVFPLET 223
Query: 560 SPWYEG-KEMLRRLVKHQVDCSYVLLSAVSYIMRE----VSKVIIGAHALLSNGAVMSRA 614
P+ +G + LV ++ + + S+++Y +R + +GA ++ NG ++
Sbjct: 224 RPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKI 283
Query: 615 GTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNEL--------------- 659
GT Q++++ + F + +T + E +P E
Sbjct: 284 GTLQLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSL 343
Query: 660 ----ISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSV 705
+ K + + + +DITP L+ +ITE + S
Sbjct: 344 ILNESGEPITGKVGIAPLEINVWNPAFDITPHELIDGIITEEGVFTKNSS 393
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Length = 340
Score = 127 bits (321), Expect = 6e-33
Identities = 45/268 (16%), Positives = 106/268 (39%), Gaps = 18/268 (6%)
Query: 445 SRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYI 504
+ + + L + RP +V++ A+ + + + + A +
Sbjct: 68 TGSLTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENADRENLFEILEN----EALKM 123
Query: 505 HEQVDMAGNAICMFFHNKLANDDVILTYGCSSLV--------EKILLTAHEKGTKFRVII 556
+ AI + + ILT+ + + ++ A E G + RV
Sbjct: 124 AYEDIEVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFA 183
Query: 557 VDGSPWYEGKEML-RRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSR 613
+ P+ +G + L+K ++ + + ++M+ + V++GA + NG ++
Sbjct: 184 DETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANK 243
Query: 614 AGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLA 673
GT ++++A+ N+P A +++ + E P E+ N +
Sbjct: 244 IGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVT---HCGGNRIAPE 300
Query: 674 HLTPLSLTYDITPSHLVTAVITELAIVP 701
+ L+ +D+T + L+TA+ITE ++
Sbjct: 301 GVKVLNPAFDVTENTLITAIITEKGVIR 328
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 340
Score = 120 bits (302), Expect = 2e-30
Identities = 75/334 (22%), Positives = 133/334 (39%), Gaps = 34/334 (10%)
Query: 391 LSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEE 450
+ E+ AI +L VRG+ A A I + E ++
Sbjct: 26 IECRNVEELADAIKKL-------AVRGAPALEAAGAYGIALAAREREFADVDELKEHLKK 78
Query: 451 RLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDM 510
+L RP +V++ ++ + + + + LR A + E+
Sbjct: 79 A----ADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALRE----AEKLAEEDVE 130
Query: 511 AGNAICMFFHNKLANDDVILTYGCSSLVEKI--------LLTAHEKGTKFRVIIVDGSPW 562
+ + L + DV+LTY + + + + +A E+G + RVI + P
Sbjct: 131 RNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPL 190
Query: 563 YEG-KEMLRRLVKHQVDCSYVLLSAVSYIMR--EVSKVIIGAHALLSNGAVMSRAGTAQV 619
+G + L++ +D + + S V +M+ V KVI+GA ++ + V ++ GT V
Sbjct: 191 NQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTV 249
Query: 620 SLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLS 679
S+VA+ N+P A F +V E ELI ++ P
Sbjct: 250 SVVAKHHNIPFYVAAPKATFDWERTAKDVVIEE-RPREELIFCGKRQIAPLNVKVYNPA- 307
Query: 680 LTYDITPSHLVTAVITELAIV--PC-TSVPVVLR 710
+D TP VTA+ITE ++ P +VP VL+
Sbjct: 308 --FDPTPLENVTALITEYGVIYPPYEVNVPKVLK 339
>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus),
(a1-4) [TaxId: 10090]}
Length = 78
Score = 28.8 bits (64), Expect = 0.46
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 530 LTY-GCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQV 577
L Y +E I G +F ++ YE + L+ QV
Sbjct: 6 LYYFNGRGRMESIRWLLAAAGVEFEEEFLETREQYEKMQKDGHLLFGQV 54
>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 85
Score = 28.5 bits (63), Expect = 0.55
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 526 DDVILTY-GCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLL 584
D+++L Y E I L G ++ + + + K +L
Sbjct: 3 DNIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPIL 62
Query: 585 SAVSYIMREVSKVII 599
I+ + S+ I+
Sbjct: 63 QIGDLILAQ-SQAIV 76
>d2pb9a1 c.74.1.2 (A:268-451) Phosphomethylpyrimidine kinase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 184
Score = 27.5 bits (61), Expect = 4.7
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 531 TYGCSSLVEKILLTAHEKGTKFRVII 556
+G S + + +LT ++R I
Sbjct: 68 EFGASDHLARAVLTYMRFYPEYRSAI 93
>d2phpa1 c.74.1.2 (A:241-420) Uncharacterized protein MJ0236
{Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 26.8 bits (59), Expect = 6.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 531 TYGCSSLVEKILLTAHEKGTKFRVII 556
+G S + KI+L+A + + R +
Sbjct: 68 EFGASEHIAKIILSASKFNPEIRACM 93
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 66
Score = 25.0 bits (55), Expect = 7.2
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 317 LEKTKTSNEKSMTKSKTEDSKPASEKSSKTEVLKSKDPNVPSTKKYSGVD 366
++K + K T D+ P ++ E+ K K + Y D
Sbjct: 9 VDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLK-------QMYGKAD 51
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.4 bits (58), Expect = 8.3
Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 2/116 (1%)
Query: 224 APPDAVTQPESKQSEPSKAKSKSEPSKEANVQNKPAQGSQDTPKPGGPPATLSNVDNKEN 283
PP PE S P + E ++ + + Q+ +
Sbjct: 22 KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 81
Query: 284 VKSEGDEVKSKA--QLKAERRAKQEQQRQAKAAALLEKTKTSNEKSMTKSKTEDSK 337
E + K + A++ ++ R+A AA+LE+ + ++ + K ++ K
Sbjct: 82 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde
dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Length = 183
Score = 26.5 bits (57), Expect = 9.1
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 548 KGTKFRVIIVDGSPWYEGKEMLRRLVKH 575
G + R+ ++ G+ Y G E++R L H
Sbjct: 2 SGEEVRIAVL-GASGYTGAEIVRLLANH 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.124 0.346
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,291,766
Number of extensions: 98793
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 17
Length of query: 717
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 625
Effective length of database: 1,144,436
Effective search space: 715272500
Effective search space used: 715272500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.0 bits)