BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17544
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 310 bits (795), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67 QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
QFD LPPILNALEV+GR RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 74 QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 133
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 134 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 193
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
APYA TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 194 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 253
Query: 247 GVISLKDKSSKVNFLFNS 264
GVI+LKD +SKV ++
Sbjct: 254 GVINLKDATSKVALVYGQ 271
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 310 bits (794), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 157/196 (80%), Positives = 167/196 (85%)
Query: 67 QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
QFD LPPILNALEV+GR RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 28 QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 87
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 88 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 147
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
APYA TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 148 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207
Query: 247 GVISLKDKSSKVNFLF 262
GVI+LKD +SKV ++
Sbjct: 208 GVINLKDATSKVALVY 223
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 310 bits (794), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67 QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
QFD LPPILNALEV+GR RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 28 QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 87
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 88 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 147
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
APYA TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 148 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207
Query: 247 GVISLKDKSSKVNFLFNS 264
GVI+LKD +SKV ++
Sbjct: 208 GVINLKDATSKVALVYGQ 225
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 310 bits (794), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67 QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
QFD LPPILNALEV+GR RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 28 QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 87
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 88 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 147
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
APYA TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 148 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207
Query: 247 GVISLKDKSSKVNFLFNS 264
GVI+LKD +SKV ++
Sbjct: 208 GVINLKDATSKVALVYGQ 225
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 310 bits (793), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67 QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
QFD LPPILNALEV+GR RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 16 QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 75
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 76 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 135
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
APYA TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 136 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 195
Query: 247 GVISLKDKSSKVNFLFNS 264
GVI+LKD +SKV ++
Sbjct: 196 GVINLKDATSKVALVYGQ 213
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 310 bits (793), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 157/198 (79%), Positives = 167/198 (84%)
Query: 67 QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
QFD LPPILNALEV+GR RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PI+
Sbjct: 26 QFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIR 85
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVDLL
Sbjct: 86 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 145
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
APYA TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 146 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 205
Query: 247 GVISLKDKSSKVNFLFNS 264
GVI+LKD +SKV ++
Sbjct: 206 GVINLKDATSKVALVYGQ 223
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/198 (78%), Positives = 166/198 (83%)
Query: 67 QFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
QFD LPPILNALEV+GR RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DSG PIK
Sbjct: 24 QFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIK 83
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
IPVG ETLGRI+NVIGEPIDERGPI T + A IHA+APEF+EMSVEQEILVTGIKVVDLL
Sbjct: 84 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLL 143
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
APYA TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES
Sbjct: 144 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 203
Query: 247 GVISLKDKSSKVNFLFNS 264
GVI+LKD +SKV ++
Sbjct: 204 GVINLKDATSKVALVYGQ 221
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 248 bits (632), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71 DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
+LP ILNALE++ +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 62 ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 121
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
ETLGRIINVIGEPIDERGPI + IHAD P F E S EIL TGIKVVDLLAPYA
Sbjct: 122 RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 181
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 182 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 241
Query: 251 LKDKSSKVNFLF 262
L+ + SKV +F
Sbjct: 242 LEGE-SKVALVF 252
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 247 bits (630), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71 DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
+LP ILNALE++ +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 35 ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 94
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
ETLGRIINVIGEPIDERGPI + IHAD P F E S EIL TGIKVVDLLAPYA
Sbjct: 95 RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 154
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 155 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 214
Query: 251 LKDKSSKVNFLF 262
L+ + SKV +F
Sbjct: 215 LEGE-SKVALVF 225
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71 DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
+LP ILNALE++ +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 35 ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 94
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
ETLGRIINVIGEPIDERGPI + IHAD P F E S EIL TGIKVVDLLAPYA
Sbjct: 95 RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 154
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 155 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 214
Query: 251 LKDKSSKVNFLF 262
L+ + SKV +F
Sbjct: 215 LEGE-SKVALVF 225
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71 DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
+LP ILNALE++ +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 29 ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 88
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
ETLGRIINVIGEPIDERGPI + IHAD P F E S EIL TGIKVVDLLAPYA
Sbjct: 89 RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 148
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 149 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 208
Query: 251 LKDKSSKVNFLF 262
L+ + SKV +F
Sbjct: 209 LEGE-SKVALVF 219
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71 DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
+LP ILNALE++ +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 24 ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 83
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
ETLGRIINVIGEPIDERGPI + IHAD P F E S EIL TGIKVVDLLAPYA
Sbjct: 84 RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 143
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 144 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 203
Query: 251 LKDKSSKVNFLF 262
L+ + SKV +F
Sbjct: 204 LEGE-SKVALVF 214
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 246 bits (629), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 71 DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130
+LP ILNALE++ +LVLEVAQHLGENTVRTIAMDGTEGLVRG+ V D+G PI +PVG
Sbjct: 24 ELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVG 83
Query: 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYA 190
ETLGRIINVIGEPIDERGPI + IHAD P F E S EIL TGIKVVDLLAPYA
Sbjct: 84 RETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYA 143
Query: 191 XXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
TV I ELINN+AKAHGG+SVF GVGERTREGNDLY EM E+GVI+
Sbjct: 144 RGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVIN 203
Query: 251 LKDKSSKVNFLF 262
L+ + SKV +F
Sbjct: 204 LEGE-SKVALVF 214
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 128/186 (68%), Gaps = 2/186 (1%)
Query: 67 QFDH-DLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP 124
QF+ LP I NA+ +E + L +E A HLG+N VR +AM T+GLVRG D+G P
Sbjct: 17 QFESGQLPDIYNAITIERPQGGTLTVEAAVHLGDNVVRCVAMASTDGLVRGLEAVDTGAP 76
Query: 125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVD 184
I +PVG TLGR+ NV+GEPIDE+G ++ ++ IH APEF E+S EIL TGIKV+D
Sbjct: 77 ISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPIHRPAPEFEELSTADEILETGIKVID 136
Query: 185 LLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 244
LLAPYA TVLI ELINNVA+ HGG SVFAGVGERTREGNDLYHEM
Sbjct: 137 LLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERTREGNDLYHEMK 196
Query: 245 ESGVIS 250
+SGVIS
Sbjct: 197 DSGVIS 202
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 193 bits (491), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/187 (57%), Positives = 128/187 (68%), Gaps = 8/187 (4%)
Query: 72 LPPILNALEVEGRSPR-------LVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP 124
LP I NAL+++ ++ L LEVA HLG++TVRTIAM T+GL+RG V D+G P
Sbjct: 23 LPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP 82
Query: 125 IKIPVGAETLGRIINVIGEPIDERGPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVV 183
I +PVG TLGR+ NV+GEPID G I D + IH AP+F E++ E EIL TGIKVV
Sbjct: 83 ISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVV 142
Query: 184 DLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 243
DLLAPY TVLI ELI+N+A+ HGG SVFAGVGERTREGNDLYHEM
Sbjct: 143 DLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEM 202
Query: 244 IESGVIS 250
+SGVIS
Sbjct: 203 KDSGVIS 209
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/198 (52%), Positives = 129/198 (65%), Gaps = 4/198 (2%)
Query: 67 QFDHD-LPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI 125
+F D +P + +ALEV+ + RLVLEV Q LG VRTIAM ++GL RG V D +PI
Sbjct: 16 EFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPI 75
Query: 126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDL 185
++PVG TLGRI+NV+GEP+D +G I ++ AIH AP + E+S QE+L TGIKV+DL
Sbjct: 76 EVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDL 135
Query: 186 LAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE 245
+ P+A TV +MELI N+A H GYSVFAGVGERTREGND YHEM +
Sbjct: 136 MCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTD 195
Query: 246 SGVISLKDKSSKVNFLFN 263
S VI DK S V N
Sbjct: 196 SNVI---DKVSLVYGQMN 210
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 170 bits (430), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 126/197 (63%), Gaps = 6/197 (3%)
Query: 72 LPPILNALEVEGRSP-----RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126
+P I NAL V+GR + EV Q LG N VR +AM T+GL RG V D+G P+
Sbjct: 40 MPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLS 99
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
+PVG TLGRI NV+GEP+D P+DT ++ IH AP F ++ + I TGIKVV+LL
Sbjct: 100 VPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLL 159
Query: 187 APYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
APY TVLIMELINN+AKAHGG SVF GVGERTREGNDLY EM ES
Sbjct: 160 APYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219
Query: 247 GVISLKD-KSSKVNFLF 262
GVI+ ++ SKV ++
Sbjct: 220 GVINEQNIAESKVALVY 236
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 92 VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
+A +L ++V + M L G V +G +++PVG LGR++N +G PID +GP+
Sbjct: 62 IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121
Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIME 211
D D +A+ A AP +E + + TG K VD + P T L ++
Sbjct: 122 DHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAID 181
Query: 212 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
I N + G ++ +G++ +++ ++ E G ++
Sbjct: 182 AIIN-QRDSGIKCIYVAIGQKASTISNVVRKLEEHGALA 219
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
I + G++ LV+ G++V +GN + +PVG LGR+++ +G PID +GPID +
Sbjct: 50 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 109
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
AP + E + TG+K VD L P T + ++ I N + + G
Sbjct: 110 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 169
Query: 223 -------YSVFAGVGER 232
Y V+ VG++
Sbjct: 170 SDESKKLYCVYVAVGQK 186
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
I + G++ LV+ G++V +GN + +PVG LGR+++ +G PID +GPID +
Sbjct: 110 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 169
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
AP + E + TG+K VD L P T + ++ I N + + G
Sbjct: 170 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 229
Query: 223 -------YSVFAGVGER 232
Y V+ VG++
Sbjct: 230 SDESKKLYCVYVAVGQK 246
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
I + G++ LV+ G++V +GN + +PVG LGR+++ +G PID +GPID +
Sbjct: 51 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 110
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
AP + E + TG+K VD L P T + ++ I N + + G
Sbjct: 111 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 170
Query: 223 -------YSVFAGVGER 232
Y V+ VG++
Sbjct: 171 SDESKKLYCVYVAVGQK 187
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%)
Query: 89 VLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDER 148
V+ +AQ+L E+ V + + + G V +G +++PVG LGR++N +G+P+D R
Sbjct: 59 VMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGR 118
Query: 149 GPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAP 188
GPI+T + I + AP ++ E L TGIK +D + P
Sbjct: 119 GPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIP 158
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
I + G++ LV+ G++V +GN + +PVG LGR+++ +G PID +GPID +
Sbjct: 75 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
AP + E + TG+K VD L P T + ++ I N + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 223 -------YSVFAGVGER 232
Y V+ VG++
Sbjct: 195 SDESKKLYCVYVAVGQK 211
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
I + G++ LV+ G++V +GN + +PVG LGR+++ +G PID +GPID +
Sbjct: 75 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
AP + E + TG+K VD L P T + ++ I N + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 223 -------YSVFAGVGER 232
Y V+ VG++
Sbjct: 195 SDESKKLYCVYVAVGQK 211
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 104 IAMDGTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHAD 162
I + G++ LV+ G++V +GN + +PVG LGR+++ +G PID +GPID +
Sbjct: 75 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 163 APEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 222
AP + E + TG+K VD L P T + ++ I N + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 223 -------YSVFAGVGER 232
Y V+ VG++
Sbjct: 195 SDESKKLYCVYVAVGQK 211
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 58/100 (58%)
Query: 89 VLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDER 148
V+ +A +L EN V + + G+ G V +G +++PVG +GR++N +G+P+D
Sbjct: 59 VMGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGL 118
Query: 149 GPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAP 188
GP++T ++ I + AP ++ E L TGIK +D L P
Sbjct: 119 GPVETTETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVP 158
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Query: 92 VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
VA +L E+ V I + + + G V I++PVG E LGR++N +GEP+D +GPI
Sbjct: 75 VAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI 134
Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIME 211
+ I AP + L TGIK +D P T + ++
Sbjct: 135 NAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAID 194
Query: 212 LINNVAKAHGGYSVFAGVGER 232
I N K G Y ++ +G++
Sbjct: 195 TIIN-QKGQGVYCIYVAIGQK 214
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
G + L++ G +V +G + +PVG E LGR+++ +G ID +GPI + + AP
Sbjct: 120 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 179
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
+ +E + TGIK VD L P T + ++ I N + + G
Sbjct: 180 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 239
Query: 223 ---YSVFAGVGER 232
Y ++ +G++
Sbjct: 240 KKLYCIYVAIGQK 252
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
G + L++ G +V +G + +PVG E LGR+++ +G ID +GPI + + AP
Sbjct: 54 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 113
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
+ +E + TGIK VD L P T + ++ I N + + G
Sbjct: 114 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 173
Query: 223 ---YSVFAGVGER 232
Y ++ +G++
Sbjct: 174 KKLYCIYVAIGQK 186
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
G + L++ G +V +G + +PVG E LGR+++ +G ID +GPI + + AP
Sbjct: 59 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 118
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
+ +E + TGIK VD L P T + ++ I N + + G
Sbjct: 119 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 178
Query: 223 ---YSVFAGVGER 232
Y ++ +G++
Sbjct: 179 KKLYCIYVAIGQK 191
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
G + L++ G +V +G + +PVG E LGR+++ +G ID +GPI + + AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
+ +E + TGIK VD L P T + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
Y ++ +G++
Sbjct: 197 KKLYCIYVAIGQK 209
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
G + L++ G +V +G + +PVG E LGR+++ +G ID +GPI + + AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
+ +E + TGIK VD L P T + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
Y ++ +G++
Sbjct: 197 KKLYCIYVAIGQK 209
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
G + L++ G +V +G + +PVG E LGR+++ +G ID +GPI + + AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
+ +E + TGIK VD L P T + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
Y ++ +G++
Sbjct: 197 KKLYCIYVAIGQK 209
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
G + L++ G +V +G + +PVG E LGR+++ +G ID +GP+ + + AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
+ +E + TGIK VD L P T + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
Y ++ +G++
Sbjct: 197 KKLYCIYVAIGQK 209
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 108 GTEGLVR-GQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEF 166
G + L++ G +V +G + +PVG E LGR+++ +G ID +GP+ + + AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 167 VEMSVEQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 222
+ +E + TGIK VD L P T + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 223 ---YSVFAGVGER 232
Y ++ +G++
Sbjct: 197 KKLYCIYVAIGQK 209
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 92 VAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPI 151
+A +L N V + M + G V +G +IPV LGR+IN + +PID RG I
Sbjct: 63 IALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI 122
Query: 152 DTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAP 188
+S I + AP + E L TG+ +D + P
Sbjct: 123 TASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIP 159
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 106 MDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPE 165
+GT GL + V +G +K+P + LGRI++ GEP D I D+ I+ A
Sbjct: 57 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 166 FVEMSVEQEILVTGIKVVD 184
++ + TGI +D
Sbjct: 117 PYARLPPKDFIQTGISTID 135
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 106 MDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPE 165
+GT GL + V +G +K+P + LGRI++ GEP D I D+ I+ A
Sbjct: 66 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 166 FVEMSVEQEILVTGIKVVD 184
++ + TGI +D
Sbjct: 126 PYARLPPKDFIQTGISTID 144
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 106 MDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPE 165
+GT GL + V +G +K+P + LGRI++ GEP D I D+ I+ A
Sbjct: 66 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 166 FVEMSVEQEILVTGIKVVD 184
++ + TGI +D
Sbjct: 126 PYARLPPKDFIQTGISTID 144
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 106 MDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPE 165
+GT GL + V +G +K+P + LGRI++ GEP D I D+ I+ A
Sbjct: 57 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 166 FVEMSVEQEILVTGIKVVD 184
++ + TGI +D
Sbjct: 117 PYARLPPKDFIQTGISTID 135
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 106 MDGTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPE 165
+GT GL + V +G +K+P + LGRI++ GEP D I D+ I+ A
Sbjct: 57 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 166 FVEMSVEQEILVTGIKVVD 184
++ + TGI +D
Sbjct: 117 PYARLPPKDFIQTGISTID 135
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDL 185
++ V E LGR N IG+PID PI +K I V ++ + TGI +D+
Sbjct: 81 RLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDV 140
Query: 186 L 186
+
Sbjct: 141 M 141
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 89 VLEVAQHLGENTVRTIAMDGTEGL-VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDE 147
VLEV E+ +GT G+ ++ V G+P+++ V + +GR+ + +G P D
Sbjct: 51 VLEVQ----EDKAXVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRPKDN 106
Query: 148 RGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
I +K I+ + + E + TGI +D L
Sbjct: 107 GPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHL 145
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDL 185
++ V E LGR N IG+PID PI +K I V ++ + TGI +D+
Sbjct: 81 RLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDV 140
Query: 186 L 186
+
Sbjct: 141 M 141
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 89 VLEVAQHLGENTVRTIAMDGTEGL-VRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDE 147
VLEV E+ +GT G+ ++ V G+P+++ V + +GR+ + +G P D
Sbjct: 51 VLEVQ----EDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDN 106
Query: 148 RGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
I +K I+ + + E + TGI +D L
Sbjct: 107 GPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHL 145
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 126 KIPVGAETLGRIINVIGEPIDER--GP-IDTDKSAAIHADAPEFVEMSVEQEILVTGIKV 182
KI VG LGR+I+ IG P++ P + ++S ++A+ P+ + V + + G++
Sbjct: 4 KIRVGDALLGRLIDGIGRPMESNIVAPYLPFERS--LYAEPPDPLLRQVIDQPFILGVRA 61
Query: 183 VDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 242
+D L + L+ + N A V A +GER RE N+
Sbjct: 62 IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG---ASADIIVLALIGERGREVNEFLAL 118
Query: 243 MIES 246
+ +S
Sbjct: 119 LPQS 122
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 35/61 (57%)
Query: 126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDL 185
++P+G LGR+++ G+P+D DT ++ A+ ++ + + +L TG++ ++
Sbjct: 91 QLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINA 150
Query: 186 L 186
L
Sbjct: 151 L 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,103,119
Number of Sequences: 62578
Number of extensions: 213324
Number of successful extensions: 581
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 55
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)